Query 001763
Match_columns 1017
No_of_seqs 841 out of 4961
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 08:46:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001763.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001763hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1E-113 3E-118 1048.7 82.1 727 118-1016 48-774 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 7.9E-90 1.7E-94 839.6 66.2 702 86-831 47-773 (857)
3 PLN03081 pentatricopeptide (PP 100.0 1.2E-82 2.6E-87 757.4 56.8 526 487-1016 84-611 (697)
4 PLN03081 pentatricopeptide (PP 100.0 1.4E-67 3E-72 628.2 49.8 512 117-730 83-611 (697)
5 PLN03218 maturation of RBCL 1; 100.0 2.3E-66 5E-71 615.8 52.0 532 152-730 366-916 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 1.4E-63 3E-68 592.2 51.6 537 220-832 368-916 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 5.9E-47 1.3E-51 477.1 80.4 845 96-960 28-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.9E-44 6.3E-49 452.7 82.5 826 120-965 21-869 (899)
9 PRK11447 cellulose synthase su 100.0 1.3E-25 2.8E-30 281.3 65.3 663 194-961 31-739 (1157)
10 PRK11447 cellulose synthase su 100.0 3.6E-26 7.9E-31 286.2 54.3 588 290-965 64-703 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 9.3E-25 2E-29 259.3 60.4 629 236-965 58-743 (987)
12 PRK09782 bacteriophage N4 rece 100.0 2.1E-24 4.6E-29 256.2 58.2 666 169-950 57-761 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 5.3E-25 1.1E-29 228.6 31.4 386 560-957 115-514 (966)
14 KOG4626 O-linked N-acetylgluco 99.9 9.6E-25 2.1E-29 226.7 28.1 360 593-964 117-487 (966)
15 KOG2002 TPR-containing nuclear 99.9 2E-18 4.4E-23 190.5 51.2 577 305-964 147-800 (1018)
16 KOG2002 TPR-containing nuclear 99.9 4.1E-18 8.8E-23 188.1 48.6 671 104-860 22-745 (1018)
17 TIGR00990 3a0801s09 mitochondr 99.9 3E-19 6.4E-24 210.4 38.1 250 707-962 307-571 (615)
18 PRK11788 tetratricopeptide rep 99.8 1.5E-19 3.2E-24 202.5 24.0 301 669-976 42-361 (389)
19 PRK15174 Vi polysaccharide exp 99.8 9.3E-18 2E-22 196.4 35.1 352 572-933 16-386 (656)
20 PRK15174 Vi polysaccharide exp 99.8 9.9E-18 2.1E-22 196.2 32.6 327 628-965 44-384 (656)
21 TIGR00990 3a0801s09 mitochondr 99.8 5.1E-17 1.1E-21 191.5 38.4 271 676-962 308-597 (615)
22 PRK10049 pgaA outer membrane p 99.8 1.3E-16 2.9E-21 191.2 38.3 374 560-964 48-458 (765)
23 PRK11788 tetratricopeptide rep 99.8 1.3E-17 2.9E-22 186.7 27.9 282 638-927 47-346 (389)
24 KOG4318 Bicoid mRNA stability 99.8 7.1E-15 1.5E-19 160.6 40.0 530 118-688 22-622 (1088)
25 PRK14574 hmsH outer membrane p 99.8 4.6E-15 1E-19 173.5 41.6 432 436-964 46-515 (822)
26 KOG0495 HAT repeat protein [RN 99.8 2.4E-13 5.3E-18 143.8 49.4 491 436-977 388-893 (913)
27 KOG2076 RNA polymerase III tra 99.8 1.4E-13 3E-18 151.9 48.6 632 205-958 153-891 (895)
28 KOG4318 Bicoid mRNA stability 99.8 2.1E-15 4.4E-20 164.7 32.9 671 142-960 11-734 (1088)
29 PRK10049 pgaA outer membrane p 99.7 4.5E-15 9.8E-20 178.0 36.0 222 711-936 213-464 (765)
30 KOG2076 RNA polymerase III tra 99.7 1.1E-12 2.4E-17 144.9 44.1 650 164-859 147-848 (895)
31 PRK14574 hmsH outer membrane p 99.7 2.3E-13 5E-18 159.4 39.5 450 369-935 45-520 (822)
32 KOG4422 Uncharacterized conser 99.7 4.3E-13 9.3E-18 134.9 34.1 249 279-558 198-466 (625)
33 KOG4422 Uncharacterized conser 99.7 1.2E-12 2.6E-17 131.8 35.3 334 121-471 116-480 (625)
34 KOG0495 HAT repeat protein [RN 99.6 5.9E-11 1.3E-15 126.1 47.6 496 306-893 364-877 (913)
35 KOG2003 TPR repeat-containing 99.6 4.3E-13 9.3E-18 135.4 29.1 481 394-948 206-709 (840)
36 PF13429 TPR_15: Tetratricopep 99.6 1.6E-15 3.4E-20 160.3 9.5 253 703-961 17-276 (280)
37 KOG0547 Translocase of outer m 99.6 9.2E-13 2E-17 135.1 28.4 214 742-961 339-565 (606)
38 KOG1126 DNA-binding cell divis 99.6 8.7E-14 1.9E-18 149.0 18.7 276 677-964 334-622 (638)
39 KOG0985 Vesicle coat protein c 99.6 2.3E-09 5E-14 119.1 51.0 673 227-975 486-1262(1666)
40 KOG2003 TPR repeat-containing 99.5 4.8E-12 1E-16 128.0 26.4 291 702-1003 427-723 (840)
41 KOG1126 DNA-binding cell divis 99.5 1.1E-12 2.4E-17 140.6 20.0 246 709-964 334-588 (638)
42 PRK10747 putative protoheme IX 99.5 7.2E-12 1.6E-16 138.5 26.5 277 675-961 97-389 (398)
43 KOG3616 Selective LIM binding 99.5 1.1E-08 2.3E-13 110.1 48.2 191 465-690 830-1023(1636)
44 KOG1155 Anaphase-promoting com 99.5 1.5E-11 3.2E-16 125.7 25.5 248 703-959 271-533 (559)
45 KOG1173 Anaphase-promoting com 99.5 5E-11 1.1E-15 125.3 29.4 279 660-942 242-532 (611)
46 KOG1173 Anaphase-promoting com 99.5 8.2E-11 1.8E-15 123.7 29.7 485 329-873 22-528 (611)
47 TIGR00540 hemY_coli hemY prote 99.5 1.8E-11 3.9E-16 136.1 26.8 281 672-961 94-398 (409)
48 KOG1155 Anaphase-promoting com 99.4 4.5E-10 9.8E-15 115.1 33.0 275 609-891 245-531 (559)
49 KOG1174 Anaphase-promoting com 99.4 4.5E-10 9.8E-15 113.1 31.7 370 560-936 96-508 (564)
50 PRK10747 putative protoheme IX 99.4 3.8E-11 8.2E-16 132.7 25.8 226 669-928 160-390 (398)
51 PF13429 TPR_15: Tetratricopep 99.4 7.6E-13 1.6E-17 139.8 11.1 255 666-928 12-277 (280)
52 KOG3616 Selective LIM binding 99.4 1.4E-07 3.1E-12 101.7 48.9 644 206-988 546-1212(1636)
53 TIGR00540 hemY_coli hemY prote 99.4 1.7E-10 3.8E-15 128.3 29.1 283 639-928 97-399 (409)
54 KOG0547 Translocase of outer m 99.4 9.3E-11 2E-15 120.7 23.8 217 707-930 339-568 (606)
55 KOG4162 Predicted calmodulin-b 99.4 8.3E-10 1.8E-14 120.5 32.4 399 560-962 322-783 (799)
56 KOG0985 Vesicle coat protein c 99.4 5E-07 1.1E-11 101.2 53.7 621 260-946 609-1326(1666)
57 TIGR02521 type_IV_pilW type IV 99.4 3.6E-11 7.9E-16 124.1 20.9 198 763-962 30-232 (234)
58 PRK11189 lipoprotein NlpI; Pro 99.4 4.2E-11 9.2E-16 126.4 21.2 213 743-964 40-267 (296)
59 KOG4162 Predicted calmodulin-b 99.4 9.7E-09 2.1E-13 112.4 38.4 449 449-934 313-789 (799)
60 PRK12370 invasion protein regu 99.4 7.9E-11 1.7E-15 136.2 23.8 245 709-963 276-536 (553)
61 KOG1915 Cell cycle control pro 99.4 1.8E-08 4E-13 103.5 37.4 421 271-824 87-535 (677)
62 KOG2047 mRNA splicing factor [ 99.3 4.4E-07 9.4E-12 97.3 46.4 511 252-859 76-614 (835)
63 COG2956 Predicted N-acetylgluc 99.3 1.8E-09 4E-14 105.7 25.8 286 659-983 66-368 (389)
64 KOG2047 mRNA splicing factor [ 99.3 7.1E-07 1.5E-11 95.7 45.7 73 748-824 641-718 (835)
65 KOG1129 TPR repeat-containing 99.3 9.6E-11 2.1E-15 114.2 14.9 231 698-965 227-461 (478)
66 KOG1915 Cell cycle control pro 99.3 1.2E-08 2.6E-13 104.8 30.0 431 563-1005 75-539 (677)
67 PF13041 PPR_2: PPR repeat fam 99.2 1.3E-11 2.9E-16 90.1 6.1 50 119-168 1-50 (50)
68 PRK12370 invasion protein regu 99.2 3.9E-10 8.5E-15 130.5 21.4 212 743-962 275-502 (553)
69 KOG3785 Uncharacterized conser 99.2 9.2E-09 2E-13 101.6 27.3 496 438-999 36-546 (557)
70 PRK11189 lipoprotein NlpI; Pro 99.2 1.3E-09 2.8E-14 115.1 23.5 236 705-948 37-286 (296)
71 KOG1840 Kinesin light chain [C 99.2 4.1E-10 8.9E-15 123.1 19.9 232 730-961 200-478 (508)
72 KOG1156 N-terminal acetyltrans 99.2 5.3E-07 1.2E-11 97.1 42.3 603 226-961 12-687 (700)
73 COG3071 HemY Uncharacterized e 99.2 2.3E-09 5E-14 108.7 23.2 278 675-960 97-388 (400)
74 COG3063 PilF Tfp pilus assembl 99.2 5.3E-10 1.1E-14 104.6 16.9 162 798-964 37-204 (250)
75 COG2956 Predicted N-acetylgluc 99.2 5.8E-09 1.2E-13 102.3 23.8 288 501-893 46-344 (389)
76 KOG1127 TPR repeat-containing 99.2 1.8E-07 3.9E-12 105.0 37.4 662 176-944 476-1191(1238)
77 PF13041 PPR_2: PPR repeat fam 99.2 3.8E-11 8.3E-16 87.7 6.1 50 220-269 1-50 (50)
78 TIGR02521 type_IV_pilW type IV 99.2 3.3E-09 7.2E-14 109.4 22.4 195 732-930 34-234 (234)
79 COG3071 HemY Uncharacterized e 99.2 1.4E-08 3E-13 103.1 25.2 275 609-892 102-386 (400)
80 KOG1174 Anaphase-promoting com 99.2 9.4E-08 2E-12 96.8 29.8 261 560-859 231-499 (564)
81 KOG1127 TPR repeat-containing 99.1 1.2E-07 2.7E-12 106.3 32.4 554 358-961 492-1103(1238)
82 KOG0624 dsRNA-activated protei 99.1 1.8E-07 3.9E-12 92.4 29.0 319 560-939 37-381 (504)
83 KOG3785 Uncharacterized conser 99.1 7.5E-07 1.6E-11 88.5 33.1 178 230-417 30-213 (557)
84 KOG1125 TPR repeat-containing 99.0 5.9E-09 1.3E-13 110.6 16.6 217 740-962 296-527 (579)
85 KOG1129 TPR repeat-containing 99.0 6.6E-09 1.4E-13 101.6 14.9 226 662-893 223-455 (478)
86 KOG1156 N-terminal acetyltrans 99.0 9.7E-07 2.1E-11 95.2 31.7 440 435-923 18-506 (700)
87 COG3063 PilF Tfp pilus assembl 99.0 7.6E-08 1.6E-12 90.5 20.4 199 732-934 38-242 (250)
88 KOG1840 Kinesin light chain [C 99.0 2.2E-08 4.7E-13 109.8 18.2 232 627-858 200-477 (508)
89 KOG3617 WD40 and TPR repeat-co 99.0 8.8E-06 1.9E-10 89.7 36.9 268 220-588 724-994 (1416)
90 KOG2376 Signal recognition par 98.9 3.6E-06 7.8E-11 90.0 32.6 432 498-957 20-515 (652)
91 KOG2376 Signal recognition par 98.9 1.6E-06 3.4E-11 92.6 29.9 140 709-855 356-515 (652)
92 KOG0624 dsRNA-activated protei 98.9 4.6E-07 1E-11 89.6 23.8 299 659-964 35-372 (504)
93 KOG3617 WD40 and TPR repeat-co 98.9 1.6E-05 3.5E-10 87.7 37.1 138 99-248 737-884 (1416)
94 cd05804 StaR_like StaR_like; a 98.9 4.1E-07 8.9E-12 100.4 25.8 302 659-963 3-337 (355)
95 PF12569 NARP1: NMDA receptor- 98.9 4.5E-07 9.8E-12 101.0 25.2 285 668-960 10-332 (517)
96 KOG0548 Molecular co-chaperone 98.9 2.8E-07 6.1E-12 97.3 21.8 375 568-963 9-456 (539)
97 PF12569 NARP1: NMDA receptor- 98.8 1.6E-06 3.6E-11 96.6 27.7 431 467-957 12-515 (517)
98 PLN02789 farnesyltranstransfer 98.8 4.8E-07 1E-11 95.2 20.9 200 742-947 50-269 (320)
99 KOG0548 Molecular co-chaperone 98.8 3.3E-06 7.2E-11 89.5 26.1 236 698-946 228-473 (539)
100 TIGR03302 OM_YfiO outer membra 98.8 2.4E-07 5.1E-12 95.3 17.3 180 763-962 32-232 (235)
101 KOG1125 TPR repeat-containing 98.7 1.8E-07 3.9E-12 99.7 15.1 214 640-859 299-526 (579)
102 KOG4340 Uncharacterized conser 98.7 4.9E-07 1.1E-11 87.6 16.6 276 671-957 19-334 (459)
103 cd05804 StaR_like StaR_like; a 98.7 5.7E-06 1.2E-10 91.3 26.7 270 692-964 4-295 (355)
104 PRK10370 formate-dependent nit 98.7 7E-07 1.5E-11 87.5 16.2 148 803-964 23-175 (198)
105 PRK15359 type III secretion sy 98.7 2.1E-07 4.4E-12 86.2 11.8 122 816-944 13-137 (144)
106 KOG4340 Uncharacterized conser 98.7 2.6E-05 5.7E-10 76.0 25.9 280 672-962 122-443 (459)
107 KOG1128 Uncharacterized conser 98.6 1.8E-06 3.8E-11 94.6 18.8 216 659-893 395-613 (777)
108 PRK15359 type III secretion sy 98.6 4.2E-07 9.2E-12 84.1 11.4 108 852-964 14-123 (144)
109 PRK15363 pathogenicity island 98.6 3E-07 6.6E-12 82.8 9.9 98 866-963 34-133 (157)
110 KOG1128 Uncharacterized conser 98.6 3.2E-06 6.9E-11 92.7 18.2 223 759-1004 393-618 (777)
111 PRK15179 Vi polysaccharide bio 98.5 3E-06 6.6E-11 98.3 18.8 133 798-935 88-224 (694)
112 PF04733 Coatomer_E: Coatomer 98.5 1.9E-06 4.2E-11 89.5 15.3 217 731-961 37-264 (290)
113 KOG1070 rRNA processing protei 98.5 6.2E-06 1.3E-10 96.4 20.4 209 751-965 1446-1666(1710)
114 PRK10370 formate-dependent nit 98.5 3.4E-06 7.4E-11 82.6 15.9 153 771-937 23-182 (198)
115 PLN02789 farnesyltranstransfer 98.5 6.4E-06 1.4E-10 86.7 18.7 186 772-962 45-250 (320)
116 PRK04841 transcriptional regul 98.5 7.6E-05 1.6E-09 93.8 30.2 27 564-590 344-370 (903)
117 PF12854 PPR_1: PPR repeat 98.5 2.5E-07 5.5E-12 60.2 4.2 33 252-284 2-34 (34)
118 PRK14720 transcript cleavage f 98.4 1.1E-05 2.4E-10 94.2 20.2 216 691-944 28-268 (906)
119 TIGR03302 OM_YfiO outer membra 98.4 6.6E-06 1.4E-10 84.5 16.1 184 726-930 30-234 (235)
120 COG5010 TadD Flp pilus assembl 98.4 8.8E-06 1.9E-10 78.8 15.0 125 835-961 70-196 (257)
121 PRK04841 transcriptional regul 98.4 0.004 8.6E-08 78.4 43.6 126 734-859 617-759 (903)
122 KOG0553 TPR repeat-containing 98.4 4.1E-06 9E-11 82.6 12.8 96 803-903 88-186 (304)
123 COG5010 TadD Flp pilus assembl 98.4 1.3E-05 2.9E-10 77.6 16.0 153 768-925 70-228 (257)
124 PF12854 PPR_1: PPR repeat 98.4 2.5E-07 5.3E-12 60.3 2.9 32 186-217 2-33 (34)
125 PF04733 Coatomer_E: Coatomer 98.4 4.6E-06 1E-10 86.7 13.8 217 738-963 10-231 (290)
126 COG4783 Putative Zn-dependent 98.3 7.7E-05 1.7E-09 78.8 19.3 145 798-964 308-456 (484)
127 PRK15179 Vi polysaccharide bio 98.3 3.8E-05 8.2E-10 89.4 18.8 144 760-907 82-230 (694)
128 KOG3060 Uncharacterized conser 98.3 0.00024 5.3E-09 68.2 20.7 169 768-940 56-232 (289)
129 PRK14720 transcript cleavage f 98.2 3.1E-05 6.7E-10 90.6 17.8 205 621-859 25-251 (906)
130 TIGR02552 LcrH_SycD type III s 98.2 9E-06 2E-10 75.1 10.9 95 868-962 18-114 (135)
131 KOG1070 rRNA processing protei 98.2 0.00012 2.5E-09 86.2 21.1 195 691-892 1455-1659(1710)
132 COG4783 Putative Zn-dependent 98.2 0.00019 4.2E-09 75.8 20.0 144 738-903 315-463 (484)
133 KOG0550 Molecular chaperone (D 98.2 1.7E-05 3.7E-10 81.1 11.8 165 803-972 176-360 (486)
134 KOG0550 Molecular chaperone (D 98.2 0.00017 3.8E-09 74.1 18.9 305 643-955 66-436 (486)
135 KOG3081 Vesicle coat complex C 98.1 0.00023 5.1E-09 68.9 17.3 162 716-886 95-260 (299)
136 COG3898 Uncharacterized membra 98.1 0.0054 1.2E-07 62.9 27.6 239 708-960 134-390 (531)
137 KOG2053 Mitochondrial inherita 98.1 0.04 8.6E-07 63.1 37.2 160 732-897 439-609 (932)
138 KOG1914 mRNA cleavage and poly 98.1 0.026 5.5E-07 60.8 33.9 179 711-893 310-498 (656)
139 KOG1914 mRNA cleavage and poly 98.1 0.01 2.2E-07 63.7 30.2 148 405-587 347-498 (656)
140 TIGR02552 LcrH_SycD type III s 98.1 4.5E-05 9.8E-10 70.3 11.8 113 818-935 5-121 (135)
141 TIGR00756 PPR pentatricopeptid 98.0 7E-06 1.5E-10 54.7 4.0 35 122-156 1-35 (35)
142 TIGR00756 PPR pentatricopeptid 98.0 1.1E-05 2.3E-10 53.7 4.4 35 223-257 1-35 (35)
143 PF13414 TPR_11: TPR repeat; P 98.0 1.5E-05 3.3E-10 63.1 5.9 65 898-962 2-67 (69)
144 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 8.9E-05 1.9E-09 79.6 13.1 121 835-960 173-295 (395)
145 PF09976 TPR_21: Tetratricopep 97.9 0.00034 7.4E-09 65.1 14.2 123 799-925 15-144 (145)
146 KOG2053 Mitochondrial inherita 97.9 0.094 2E-06 60.3 35.2 155 630-791 440-606 (932)
147 KOG3060 Uncharacterized conser 97.9 0.0017 3.7E-08 62.6 18.5 163 798-964 54-222 (289)
148 PF13431 TPR_17: Tetratricopep 97.9 9.7E-06 2.1E-10 52.7 2.4 33 922-954 2-34 (34)
149 PF13812 PPR_3: Pentatricopept 97.8 2.4E-05 5.2E-10 51.6 4.1 34 121-154 1-34 (34)
150 PF09976 TPR_21: Tetratricopep 97.8 0.00023 5E-09 66.2 12.1 123 834-958 15-143 (145)
151 KOG3081 Vesicle coat complex C 97.8 0.0013 2.8E-08 64.0 16.7 142 803-954 115-262 (299)
152 PF13812 PPR_3: Pentatricopept 97.8 3.2E-05 7E-10 50.9 4.4 34 222-255 1-34 (34)
153 PF12895 Apc3: Anaphase-promot 97.8 2.2E-05 4.9E-10 65.0 4.1 77 881-958 3-83 (84)
154 PF13432 TPR_16: Tetratricopep 97.8 4.1E-05 8.9E-10 59.7 5.3 59 905-963 3-61 (65)
155 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00017 3.7E-09 64.7 10.1 61 902-962 42-105 (119)
156 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00037 8E-09 75.0 14.0 122 769-896 174-297 (395)
157 COG4235 Cytochrome c biogenesi 97.8 0.00016 3.4E-09 72.4 10.3 109 864-972 153-266 (287)
158 PRK15363 pathogenicity island 97.8 0.00031 6.8E-09 63.6 11.0 101 764-866 35-138 (157)
159 cd00189 TPR Tetratricopeptide 97.7 0.00016 3.4E-09 61.8 9.0 93 870-962 3-97 (100)
160 PLN03088 SGT1, suppressor of 97.7 0.00032 7E-09 76.0 12.8 107 803-946 9-117 (356)
161 PRK10866 outer membrane biogen 97.7 0.003 6.6E-08 64.1 18.9 180 763-961 31-240 (243)
162 PRK15331 chaperone protein Sic 97.7 0.00023 5.1E-09 64.7 9.3 90 872-961 42-133 (165)
163 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00033 7.2E-09 62.8 10.5 105 798-936 4-113 (119)
164 PRK02603 photosystem I assembl 97.7 0.00047 1E-08 66.4 11.9 127 798-948 37-166 (172)
165 PLN03088 SGT1, suppressor of 97.7 0.00019 4E-09 77.9 9.9 88 875-962 10-99 (356)
166 PF01535 PPR: PPR repeat; Int 97.6 6E-05 1.3E-09 48.3 3.4 31 122-152 1-31 (31)
167 CHL00033 ycf3 photosystem I as 97.6 0.0003 6.6E-09 67.5 9.4 92 868-959 36-139 (168)
168 PRK02603 photosystem I assembl 97.6 0.00039 8.5E-09 67.0 10.2 49 900-948 73-121 (172)
169 PF01535 PPR: PPR repeat; Int 97.6 8.8E-05 1.9E-09 47.6 3.4 31 223-253 1-31 (31)
170 CHL00033 ycf3 photosystem I as 97.5 0.0018 3.9E-08 62.2 13.8 109 797-933 36-154 (168)
171 KOG1130 Predicted G-alpha GTPa 97.5 0.00078 1.7E-08 69.1 11.0 257 704-961 27-343 (639)
172 PF13432 TPR_16: Tetratricopep 97.5 0.00027 5.8E-09 55.1 6.2 61 873-933 3-65 (65)
173 PRK10153 DNA-binding transcrip 97.5 0.0021 4.6E-08 72.7 15.5 75 898-974 419-493 (517)
174 KOG0553 TPR repeat-containing 97.5 0.00073 1.6E-08 67.2 10.2 95 739-836 91-187 (304)
175 PF14559 TPR_19: Tetratricopep 97.4 0.00016 3.6E-09 56.9 3.8 52 911-962 3-54 (68)
176 PF13371 TPR_9: Tetratricopept 97.4 0.00042 9.1E-09 55.5 6.0 58 907-964 3-60 (73)
177 PF12688 TPR_5: Tetratrico pep 97.4 0.0023 5.1E-08 56.1 10.8 95 798-892 3-100 (120)
178 COG4700 Uncharacterized protei 97.3 0.0086 1.9E-07 54.9 14.2 132 828-962 86-222 (251)
179 cd00189 TPR Tetratricopeptide 97.3 0.0016 3.6E-08 55.2 9.9 58 799-858 3-61 (100)
180 KOG1538 Uncharacterized conser 97.3 0.031 6.6E-07 61.1 20.7 48 841-898 757-805 (1081)
181 PF12895 Apc3: Anaphase-promot 97.3 0.00041 8.8E-09 57.4 5.4 80 809-892 2-83 (84)
182 KOG1538 Uncharacterized conser 97.2 0.015 3.3E-07 63.3 17.2 34 567-618 638-672 (1081)
183 PF07079 DUF1347: Protein of u 97.2 0.42 9E-06 50.8 33.7 200 730-958 299-520 (549)
184 KOG1130 Predicted G-alpha GTPa 97.2 0.0011 2.4E-08 68.0 8.0 219 738-957 26-299 (639)
185 PRK10153 DNA-binding transcrip 97.2 0.0096 2.1E-07 67.5 16.5 58 799-858 423-480 (517)
186 PRK10803 tol-pal system protei 97.2 0.0018 3.8E-08 66.2 9.6 93 870-962 146-246 (263)
187 PF14938 SNAP: Soluble NSF att 97.2 0.021 4.5E-07 60.0 17.6 93 767-859 117-224 (282)
188 COG3898 Uncharacterized membra 97.1 0.2 4.3E-06 52.0 23.0 214 673-893 165-389 (531)
189 PF14938 SNAP: Soluble NSF att 97.1 0.0069 1.5E-07 63.7 13.7 162 771-934 42-231 (282)
190 PF04840 Vps16_C: Vps16, C-ter 97.1 0.35 7.5E-06 51.2 26.0 108 464-588 182-289 (319)
191 COG4700 Uncharacterized protei 97.1 0.0072 1.6E-07 55.3 11.4 106 857-962 79-189 (251)
192 PLN03098 LPA1 LOW PSII ACCUMUL 97.1 0.0015 3.3E-08 69.7 8.2 67 896-962 71-141 (453)
193 PF10037 MRP-S27: Mitochondria 97.1 0.0085 1.8E-07 64.9 13.6 121 150-270 60-186 (429)
194 PF13428 TPR_14: Tetratricopep 97.1 0.00081 1.8E-08 47.2 4.0 42 900-941 2-43 (44)
195 PF13414 TPR_11: TPR repeat; P 97.1 0.0018 4E-08 51.1 6.5 60 798-859 5-66 (69)
196 PF14559 TPR_19: Tetratricopep 97.0 0.00056 1.2E-08 53.8 3.5 41 900-940 26-66 (68)
197 PRK10866 outer membrane biogen 97.0 0.039 8.5E-07 56.1 17.5 60 664-723 34-98 (243)
198 PRK10803 tol-pal system protei 97.0 0.0082 1.8E-07 61.4 11.9 100 803-935 150-253 (263)
199 COG0457 NrfG FOG: TPR repeat [ 96.9 0.37 8E-06 49.2 25.1 216 743-962 37-265 (291)
200 COG4785 NlpI Lipoprotein NlpI, 96.9 0.034 7.4E-07 52.4 14.4 186 772-964 73-268 (297)
201 PF13525 YfiO: Outer membrane 96.9 0.066 1.4E-06 53.0 17.4 169 765-954 6-199 (203)
202 KOG0543 FKBP-type peptidyl-pro 96.9 0.016 3.4E-07 60.6 12.9 61 901-961 259-319 (397)
203 PF05843 Suf: Suppressor of fo 96.8 0.022 4.8E-07 59.6 13.8 134 798-934 3-142 (280)
204 KOG2796 Uncharacterized conser 96.8 0.027 5.8E-07 54.8 12.7 133 798-930 179-317 (366)
205 COG4235 Cytochrome c biogenesi 96.8 0.032 7E-07 56.3 13.7 105 752-859 145-255 (287)
206 PF13371 TPR_9: Tetratricopept 96.7 0.0033 7.1E-08 50.3 5.6 66 875-940 3-70 (73)
207 PF12688 TPR_5: Tetratrico pep 96.7 0.018 4E-07 50.5 10.5 92 700-791 7-102 (120)
208 PF08579 RPM2: Mitochondrial r 96.7 0.019 4.1E-07 48.3 9.8 88 225-335 28-116 (120)
209 PF08579 RPM2: Mitochondrial r 96.7 0.012 2.6E-07 49.4 8.4 80 124-203 28-116 (120)
210 KOG2041 WD40 repeat protein [G 96.6 1.4 3E-05 49.4 25.7 103 659-792 849-951 (1189)
211 COG0457 NrfG FOG: TPR repeat [ 96.6 0.71 1.5E-05 47.0 23.9 229 709-946 38-279 (291)
212 PF04840 Vps16_C: Vps16, C-ter 96.6 1 2.2E-05 47.7 24.2 107 360-482 179-285 (319)
213 PF13281 DUF4071: Domain of un 96.5 0.2 4.4E-06 53.3 18.2 163 766-931 143-337 (374)
214 KOG0543 FKBP-type peptidyl-pro 96.5 0.025 5.4E-07 59.2 11.2 96 869-964 259-357 (397)
215 PF06239 ECSIT: Evolutionarily 96.4 0.018 3.9E-07 55.0 8.9 96 111-206 35-153 (228)
216 PRK11906 transcriptional regul 96.4 0.056 1.2E-06 58.2 13.2 143 812-957 274-431 (458)
217 PF13424 TPR_12: Tetratricopep 96.3 0.0055 1.2E-07 49.8 4.3 60 901-960 7-73 (78)
218 PF10037 MRP-S27: Mitochondria 96.3 0.047 1E-06 59.3 12.3 120 252-371 61-186 (429)
219 PF13525 YfiO: Outer membrane 96.2 0.12 2.5E-06 51.2 14.0 142 798-962 7-170 (203)
220 KOG4555 TPR repeat-containing 96.1 0.046 9.9E-07 47.0 8.9 89 876-964 52-146 (175)
221 PF03704 BTAD: Bacterial trans 96.1 0.075 1.6E-06 49.5 11.7 107 841-961 16-124 (146)
222 PF05843 Suf: Suppressor of fo 96.1 0.057 1.2E-06 56.5 11.9 126 697-824 4-135 (280)
223 PRK11906 transcriptional regul 96.1 0.052 1.1E-06 58.4 11.3 120 847-966 274-405 (458)
224 PF13424 TPR_12: Tetratricopep 95.9 0.017 3.8E-07 46.8 5.4 58 766-823 7-73 (78)
225 PF07079 DUF1347: Protein of u 95.8 3.3 7.2E-05 44.4 36.7 85 815-904 440-530 (549)
226 PF06239 ECSIT: Evolutionarily 95.8 0.08 1.7E-06 50.7 9.9 88 286-373 45-153 (228)
227 PF04184 ST7: ST7 protein; In 95.8 0.31 6.7E-06 52.7 15.2 100 836-935 264-382 (539)
228 KOG2796 Uncharacterized conser 95.8 0.3 6.6E-06 47.8 13.7 127 698-824 181-314 (366)
229 PF14432 DYW_deaminase: DYW fa 95.6 0.0066 1.4E-07 53.0 2.0 26 968-997 1-26 (116)
230 PLN03098 LPA1 LOW PSII ACCUMUL 95.6 0.041 8.9E-07 59.1 8.1 62 763-824 74-140 (453)
231 PF13512 TPR_18: Tetratricopep 95.5 0.17 3.7E-06 45.4 10.5 73 876-948 19-99 (142)
232 KOG1941 Acetylcholine receptor 95.5 0.3 6.4E-06 50.1 13.3 224 705-928 17-275 (518)
233 PF03704 BTAD: Bacterial trans 95.4 0.15 3.1E-06 47.5 10.5 71 798-870 64-139 (146)
234 PF00515 TPR_1: Tetratricopept 95.4 0.025 5.5E-07 36.8 3.9 33 900-932 2-34 (34)
235 COG3118 Thioredoxin domain-con 95.4 0.65 1.4E-05 46.9 15.1 53 803-857 141-194 (304)
236 COG4105 ComL DNA uptake lipopr 95.3 2.7 5.8E-05 41.9 18.9 174 771-963 41-234 (254)
237 PRK15331 chaperone protein Sic 95.3 0.19 4E-06 46.3 10.2 87 704-792 47-133 (165)
238 PF07719 TPR_2: Tetratricopept 95.3 0.041 8.9E-07 35.8 4.5 33 900-932 2-34 (34)
239 KOG2041 WD40 repeat protein [G 95.2 1.9 4.2E-05 48.3 19.1 30 660-689 690-719 (1189)
240 COG3118 Thioredoxin domain-con 95.2 1.5 3.2E-05 44.4 16.9 119 737-859 142-264 (304)
241 KOG2114 Vacuolar assembly/sort 95.2 8.4 0.00018 44.8 26.1 176 95-285 339-518 (933)
242 PF04184 ST7: ST7 protein; In 95.1 0.25 5.4E-06 53.4 11.9 189 808-1014 180-381 (539)
243 KOG4555 TPR repeat-containing 95.0 0.18 4E-06 43.5 8.4 89 771-859 50-143 (175)
244 KOG2114 Vacuolar assembly/sort 94.9 9.8 0.00021 44.3 26.7 116 364-486 340-458 (933)
245 KOG1941 Acetylcholine receptor 94.9 0.71 1.5E-05 47.5 13.8 217 741-957 18-270 (518)
246 KOG2280 Vacuolar assembly/sort 94.7 10 0.00022 43.5 24.0 123 161-284 442-573 (829)
247 COG1729 Uncharacterized protei 94.7 0.27 5.7E-06 49.2 10.1 90 802-893 147-241 (262)
248 COG1729 Uncharacterized protei 94.6 0.2 4.2E-06 50.1 9.1 84 879-962 153-244 (262)
249 PF13512 TPR_18: Tetratricopep 94.6 0.29 6.3E-06 43.9 9.2 72 767-840 13-91 (142)
250 KOG2610 Uncharacterized conser 94.4 0.47 1E-05 48.2 11.1 150 706-858 115-274 (491)
251 KOG1920 IkappaB kinase complex 94.2 6.8 0.00015 47.4 21.4 169 700-893 857-1025(1265)
252 KOG1550 Extracellular protein 94.2 6 0.00013 46.1 21.5 246 706-963 261-539 (552)
253 COG2976 Uncharacterized protei 94.1 1.4 3E-05 41.7 12.7 115 814-933 70-193 (207)
254 COG4105 ComL DNA uptake lipopr 93.9 3.9 8.5E-05 40.8 16.2 70 704-773 44-115 (254)
255 smart00299 CLH Clathrin heavy 93.9 1.8 3.9E-05 39.7 13.7 66 832-910 70-136 (140)
256 PF10300 DUF3808: Protein of u 93.8 1.7 3.7E-05 49.2 15.9 158 700-859 194-375 (468)
257 KOG2280 Vacuolar assembly/sort 93.8 16 0.00034 42.1 27.8 98 775-889 695-792 (829)
258 KOG4234 TPR repeat-containing 93.8 0.12 2.6E-06 48.3 5.2 89 841-961 105-196 (271)
259 KOG1585 Protein required for f 93.6 8 0.00017 38.0 18.1 204 725-955 23-249 (308)
260 COG5107 RNA14 Pre-mRNA 3'-end 93.3 13 0.00029 39.9 24.4 111 609-722 415-530 (660)
261 PF09205 DUF1955: Domain of un 93.3 2.2 4.8E-05 37.3 11.6 138 807-965 13-152 (161)
262 PF12921 ATP13: Mitochondrial 93.3 0.63 1.4E-05 41.4 8.9 53 861-913 46-102 (126)
263 COG4649 Uncharacterized protei 93.3 6.3 0.00014 36.4 15.0 119 806-927 68-195 (221)
264 PF10300 DUF3808: Protein of u 93.3 1.3 2.8E-05 50.1 13.7 94 798-893 231-331 (468)
265 KOG4648 Uncharacterized conser 93.3 0.19 4.2E-06 50.9 6.2 99 801-935 102-201 (536)
266 KOG2610 Uncharacterized conser 93.2 0.54 1.2E-05 47.8 9.1 160 807-970 114-284 (491)
267 KOG1586 Protein required for f 93.2 1.4 3.1E-05 42.6 11.4 163 774-947 24-202 (288)
268 PF08631 SPO22: Meiosis protei 93.1 13 0.00028 39.0 21.4 97 731-829 86-190 (278)
269 PF13281 DUF4071: Domain of un 93.0 6.2 0.00013 42.4 17.3 74 196-269 146-229 (374)
270 KOG3941 Intermediate in Toll s 92.9 0.58 1.3E-05 46.4 8.7 99 108-206 52-173 (406)
271 PF13176 TPR_7: Tetratricopept 92.9 0.16 3.4E-06 33.6 3.5 26 935-960 1-26 (36)
272 smart00299 CLH Clathrin heavy 92.8 5.1 0.00011 36.7 14.9 90 221-314 6-95 (140)
273 PF13181 TPR_8: Tetratricopept 92.7 0.18 3.9E-06 32.7 3.6 32 901-932 3-34 (34)
274 KOG2066 Vacuolar assembly/sort 92.7 24 0.00052 41.0 23.1 47 561-607 392-438 (846)
275 KOG3941 Intermediate in Toll s 92.7 1 2.2E-05 44.8 10.0 104 784-889 54-181 (406)
276 PF02259 FAT: FAT domain; Int 92.5 5.1 0.00011 43.9 17.2 148 797-946 147-305 (352)
277 KOG1258 mRNA processing protei 92.5 22 0.00048 40.1 27.1 181 763-947 296-489 (577)
278 KOG4234 TPR repeat-containing 92.3 1.4 2.9E-05 41.6 9.7 108 799-942 98-211 (271)
279 PF13431 TPR_17: Tetratricopep 92.0 0.18 3.9E-06 32.7 2.8 32 752-784 2-33 (34)
280 PF13428 TPR_14: Tetratricopep 92.0 0.4 8.7E-06 33.4 4.8 32 798-831 3-34 (44)
281 PRK11619 lytic murein transgly 91.9 32 0.0007 40.7 27.7 76 662-740 99-174 (644)
282 PF04053 Coatomer_WDAD: Coatom 91.9 1.1 2.4E-05 49.8 10.7 74 877-961 328-401 (443)
283 KOG1586 Protein required for f 91.8 6.1 0.00013 38.5 13.7 100 836-935 118-231 (288)
284 PF12921 ATP13: Mitochondrial 91.7 0.4 8.7E-06 42.7 5.6 94 764-874 2-95 (126)
285 PF13176 TPR_7: Tetratricopept 91.3 0.32 7E-06 32.1 3.5 29 901-929 1-29 (36)
286 KOG1585 Protein required for f 91.2 8 0.00017 38.0 13.9 88 765-853 151-249 (308)
287 KOG2066 Vacuolar assembly/sort 91.2 35 0.00076 39.7 21.3 74 230-305 364-440 (846)
288 COG5107 RNA14 Pre-mRNA 3'-end 91.1 25 0.00054 37.9 28.7 417 456-893 39-528 (660)
289 PF00515 TPR_1: Tetratricopept 90.9 0.47 1E-05 30.7 4.0 31 798-830 3-33 (34)
290 PF09613 HrpB1_HrpK: Bacterial 90.6 7.5 0.00016 35.9 12.7 95 736-831 17-112 (160)
291 PF09613 HrpB1_HrpK: Bacterial 90.4 5.7 0.00012 36.6 11.7 94 842-939 21-116 (160)
292 KOG4648 Uncharacterized conser 90.0 0.5 1.1E-05 48.1 5.0 84 875-958 105-190 (536)
293 PF09205 DUF1955: Domain of un 89.5 13 0.00029 32.7 12.3 60 735-795 92-151 (161)
294 KOG1258 mRNA processing protei 89.4 42 0.00092 37.9 26.1 144 672-816 265-420 (577)
295 PF00637 Clathrin: Region in C 89.3 0.16 3.5E-06 47.0 1.1 83 162-247 13-95 (143)
296 PF00637 Clathrin: Region in C 89.3 0.47 1E-05 43.9 4.2 87 429-518 12-98 (143)
297 COG0790 FOG: TPR repeat, SEL1 88.9 31 0.00067 36.5 18.4 77 885-964 173-268 (292)
298 PF07719 TPR_2: Tetratricopept 88.6 0.77 1.7E-05 29.6 3.7 31 798-830 3-33 (34)
299 PF07035 Mic1: Colon cancer-as 88.6 17 0.00038 34.0 13.8 130 179-316 17-148 (167)
300 COG4785 NlpI Lipoprotein NlpI, 88.2 26 0.00056 33.9 18.1 82 640-723 79-162 (297)
301 PF04097 Nic96: Nup93/Nic96; 88.0 41 0.00089 39.8 19.9 85 230-316 266-355 (613)
302 PRK12798 chemotaxis protein; R 87.9 44 0.00096 36.2 20.3 168 776-946 124-303 (421)
303 PF04053 Coatomer_WDAD: Coatom 87.6 8.7 0.00019 42.9 13.3 106 326-454 298-403 (443)
304 KOG1920 IkappaB kinase complex 87.6 26 0.00057 42.8 17.4 111 194-313 911-1024(1265)
305 PF10602 RPN7: 26S proteasome 87.6 4.5 9.6E-05 38.8 9.7 60 765-824 37-101 (177)
306 KOG1550 Extracellular protein 87.5 17 0.00037 42.3 16.3 51 913-965 378-429 (552)
307 PF13174 TPR_6: Tetratricopept 86.8 0.56 1.2E-05 30.0 2.2 28 935-962 2-29 (33)
308 PF11207 DUF2989: Protein of u 86.8 2.6 5.7E-05 40.4 7.3 52 901-952 142-197 (203)
309 PF06552 TOM20_plant: Plant sp 86.7 3.5 7.5E-05 38.6 7.9 61 812-877 51-123 (186)
310 KOG0890 Protein kinase of the 86.7 1.3E+02 0.0028 40.4 27.2 63 900-964 1671-1733(2382)
311 PF07721 TPR_4: Tetratricopept 86.5 0.75 1.6E-05 27.6 2.4 24 934-957 2-25 (26)
312 PF06552 TOM20_plant: Plant sp 86.1 3.2 7E-05 38.8 7.4 15 916-930 97-111 (186)
313 PRK09687 putative lyase; Provi 86.1 47 0.001 34.7 23.5 73 560-636 205-277 (280)
314 PF14853 Fis1_TPR_C: Fis1 C-te 86.0 2.1 4.5E-05 31.2 4.9 35 904-938 6-40 (53)
315 TIGR02561 HrpB1_HrpK type III 86.0 13 0.00028 33.7 10.8 55 740-795 21-75 (153)
316 KOG2471 TPR repeat-containing 85.7 38 0.00083 37.0 15.7 54 771-824 247-311 (696)
317 COG2976 Uncharacterized protei 85.3 17 0.00036 34.7 11.5 90 737-826 97-189 (207)
318 TIGR02561 HrpB1_HrpK type III 84.9 5.2 0.00011 36.2 7.8 52 912-963 23-74 (153)
319 PF13170 DUF4003: Protein of u 84.4 25 0.00053 37.0 14.0 63 813-876 160-226 (297)
320 COG3629 DnrI DNA-binding trans 83.6 7.5 0.00016 39.9 9.4 70 798-869 155-229 (280)
321 PRK10941 hypothetical protein; 83.5 6.7 0.00014 40.3 9.2 81 902-1005 184-264 (269)
322 PF13181 TPR_8: Tetratricopept 83.5 1.7 3.7E-05 27.9 3.3 27 798-824 3-29 (34)
323 PF13174 TPR_6: Tetratricopept 83.4 2 4.4E-05 27.2 3.7 31 902-932 3-33 (33)
324 PF13374 TPR_10: Tetratricopep 83.4 1.7 3.6E-05 29.6 3.5 29 934-962 3-31 (42)
325 PF13170 DUF4003: Protein of u 83.2 65 0.0014 33.9 18.4 125 238-364 78-223 (297)
326 PF10602 RPN7: 26S proteasome 82.8 7.6 0.00016 37.2 8.8 95 797-893 37-139 (177)
327 COG3629 DnrI DNA-binding trans 82.0 5.3 0.00012 40.9 7.7 54 907-960 161-214 (280)
328 KOG1464 COP9 signalosome, subu 81.7 60 0.0013 32.5 17.6 221 698-930 69-330 (440)
329 PF02259 FAT: FAT domain; Int 81.7 32 0.00069 37.5 14.7 68 898-965 145-216 (352)
330 PF07035 Mic1: Colon cancer-as 81.2 49 0.0011 31.1 15.1 40 242-281 14-53 (167)
331 KOG1308 Hsp70-interacting prot 80.6 1.2 2.5E-05 46.0 2.4 86 843-930 126-213 (377)
332 smart00028 TPR Tetratricopepti 80.6 2.3 5.1E-05 26.3 3.3 29 902-930 4-32 (34)
333 KOG4642 Chaperone-dependent E3 80.5 4.7 0.0001 39.4 6.2 47 913-959 58-104 (284)
334 PF14561 TPR_20: Tetratricopep 79.9 3.5 7.5E-05 34.2 4.6 44 919-962 8-51 (90)
335 COG4455 ImpE Protein of avirul 79.3 30 0.00066 33.6 11.0 122 800-933 5-139 (273)
336 COG1747 Uncharacterized N-term 79.3 1.1E+02 0.0024 34.0 19.6 155 698-859 70-233 (711)
337 PF13374 TPR_10: Tetratricopep 78.9 4.3 9.2E-05 27.5 4.3 27 798-824 4-30 (42)
338 PF08631 SPO22: Meiosis protei 78.5 91 0.002 32.6 22.8 19 233-251 4-22 (278)
339 COG3947 Response regulator con 78.5 28 0.00061 35.4 11.0 55 907-961 287-341 (361)
340 KOG0276 Vesicle coat complex C 78.4 19 0.00041 40.3 10.7 148 776-957 598-745 (794)
341 KOG2300 Uncharacterized conser 76.7 1E+02 0.0023 33.9 15.2 176 781-957 299-509 (629)
342 PRK09687 putative lyase; Provi 76.2 1E+02 0.0023 32.1 24.0 81 189-272 140-221 (280)
343 PF07721 TPR_4: Tetratricopept 76.0 4.3 9.3E-05 24.3 3.1 22 767-788 4-25 (26)
344 COG4649 Uncharacterized protei 75.8 70 0.0015 30.0 13.6 89 771-860 101-196 (221)
345 PF09986 DUF2225: Uncharacteri 75.3 17 0.00038 36.0 8.9 64 901-964 120-196 (214)
346 COG0790 FOG: TPR repeat, SEL1 75.0 1.2E+02 0.0025 32.0 17.2 20 704-723 51-70 (292)
347 PF04190 DUF410: Protein of un 74.8 58 0.0013 33.6 12.9 82 762-860 88-170 (260)
348 PF10579 Rapsyn_N: Rapsyn N-te 73.7 5.5 0.00012 31.5 3.8 47 843-889 18-65 (80)
349 COG1747 Uncharacterized N-term 73.6 1.6E+02 0.0034 32.9 17.4 94 763-859 65-159 (711)
350 PF04910 Tcf25: Transcriptiona 73.2 44 0.00095 36.4 12.1 117 763-893 39-165 (360)
351 PRK15180 Vi polysaccharide bio 72.3 11 0.00023 40.7 6.8 53 806-859 333-385 (831)
352 KOG4279 Serine/threonine prote 71.9 83 0.0018 36.5 13.6 99 806-932 297-399 (1226)
353 KOG3364 Membrane protein invol 71.7 36 0.00078 30.3 8.6 70 864-933 29-105 (149)
354 KOG4507 Uncharacterized conser 71.4 12 0.00027 41.5 7.1 100 842-944 618-721 (886)
355 KOG3824 Huntingtin interacting 71.0 10 0.00022 38.4 6.0 49 909-957 126-174 (472)
356 KOG0276 Vesicle coat complex C 70.9 40 0.00086 38.0 10.8 100 672-789 647-746 (794)
357 KOG0403 Neoplastic transformat 69.9 1.7E+02 0.0038 31.9 21.8 71 735-807 515-585 (645)
358 KOG0376 Serine-threonine phosp 69.8 9.7 0.00021 41.6 6.0 84 877-960 14-99 (476)
359 PF07720 TPR_3: Tetratricopept 69.4 14 0.0003 24.4 4.4 32 901-932 3-36 (36)
360 KOG4570 Uncharacterized conser 69.2 28 0.00061 35.7 8.5 102 251-353 58-165 (418)
361 PHA02875 ankyrin repeat protei 69.1 84 0.0018 35.2 14.0 82 198-284 72-159 (413)
362 KOG4642 Chaperone-dependent E3 68.4 46 0.00099 33.0 9.4 82 776-859 22-106 (284)
363 TIGR02508 type_III_yscG type I 67.5 59 0.0013 27.2 8.4 59 772-834 47-105 (115)
364 PF10345 Cohesin_load: Cohesin 67.3 2.7E+02 0.0059 33.1 31.6 186 775-960 372-604 (608)
365 KOG4570 Uncharacterized conser 66.4 55 0.0012 33.8 9.9 101 353-454 59-165 (418)
366 PF04097 Nic96: Nup93/Nic96; 66.3 2.8E+02 0.0061 32.9 21.3 49 120-170 111-159 (613)
367 KOG0686 COP9 signalosome, subu 66.0 1.4E+02 0.0031 32.2 13.1 94 765-860 151-258 (466)
368 COG4455 ImpE Protein of avirul 65.7 17 0.00037 35.2 6.0 63 873-935 7-71 (273)
369 KOG0890 Protein kinase of the 65.6 4.9E+02 0.011 35.5 36.7 59 627-689 1671-1729(2382)
370 COG5159 RPN6 26S proteasome re 65.5 1.6E+02 0.0036 30.0 16.3 32 397-428 11-42 (421)
371 TIGR03504 FimV_Cterm FimV C-te 65.2 11 0.00023 26.2 3.5 26 937-962 3-28 (44)
372 PF14561 TPR_20: Tetratricopep 65.1 32 0.00069 28.5 7.0 65 896-960 18-86 (90)
373 KOG3824 Huntingtin interacting 64.8 14 0.0003 37.6 5.5 63 878-940 127-191 (472)
374 PF09670 Cas_Cas02710: CRISPR- 64.5 56 0.0012 35.9 10.8 122 806-928 141-270 (379)
375 PF10579 Rapsyn_N: Rapsyn N-te 64.4 12 0.00026 29.7 3.9 48 808-855 18-67 (80)
376 smart00028 TPR Tetratricopepti 63.6 13 0.00027 22.6 3.7 27 798-824 3-29 (34)
377 PRK10941 hypothetical protein; 63.2 34 0.00073 35.3 8.2 71 872-942 186-258 (269)
378 TIGR02508 type_III_yscG type I 61.8 68 0.0015 26.9 7.8 63 197-262 45-107 (115)
379 TIGR01503 MthylAspMut_E methyl 61.4 48 0.001 36.4 9.1 137 808-985 147-294 (480)
380 cd00923 Cyt_c_Oxidase_Va Cytoc 61.3 43 0.00094 27.8 6.7 48 304-351 23-70 (103)
381 PF11768 DUF3312: Protein of u 61.0 96 0.0021 35.0 11.6 128 768-919 412-543 (545)
382 KOG0551 Hsp90 co-chaperone CNS 61.0 28 0.00061 36.1 6.9 91 869-959 83-179 (390)
383 COG2909 MalT ATP-dependent tra 60.8 3.7E+02 0.0081 32.5 22.6 187 775-965 426-650 (894)
384 PF04910 Tcf25: Transcriptiona 60.7 2.6E+02 0.0055 30.6 18.8 120 659-792 37-167 (360)
385 KOG3364 Membrane protein invol 60.2 45 0.00097 29.8 7.0 70 828-899 29-104 (149)
386 PF11207 DUF2989: Protein of u 60.1 43 0.00094 32.4 7.7 72 711-783 123-197 (203)
387 cd00923 Cyt_c_Oxidase_Va Cytoc 59.9 51 0.0011 27.4 6.9 46 711-756 24-69 (103)
388 KOG2581 26S proteasome regulat 59.4 2.6E+02 0.0057 30.3 14.5 123 809-931 139-279 (493)
389 PF13762 MNE1: Mitochondrial s 59.0 92 0.002 28.5 9.2 88 249-336 29-128 (145)
390 PF08424 NRDE-2: NRDE-2, neces 58.1 2.6E+02 0.0057 29.9 15.4 120 745-866 47-189 (321)
391 smart00386 HAT HAT (Half-A-TPR 57.1 17 0.00037 22.6 3.3 29 913-941 1-29 (33)
392 PRK13800 putative oxidoreducta 56.8 5E+02 0.011 32.7 23.0 32 896-927 849-880 (897)
393 TIGR03504 FimV_Cterm FimV C-te 56.7 24 0.00052 24.5 4.0 25 228-252 5-29 (44)
394 COG4976 Predicted methyltransf 56.3 18 0.00038 35.4 4.4 55 878-932 6-62 (287)
395 PF04190 DUF410: Protein of un 56.2 97 0.0021 32.0 10.3 31 659-689 87-117 (260)
396 PF14863 Alkyl_sulf_dimr: Alky 56.1 37 0.00081 30.9 6.3 69 883-954 57-125 (141)
397 PF02284 COX5A: Cytochrome c o 55.8 67 0.0014 27.1 7.0 58 712-771 28-86 (108)
398 PF07163 Pex26: Pex26 protein; 55.7 51 0.0011 33.5 7.6 85 803-890 90-181 (309)
399 COG4976 Predicted methyltransf 55.3 16 0.00035 35.6 4.0 54 841-897 5-60 (287)
400 PF12862 Apc5: Anaphase-promot 55.1 31 0.00067 28.9 5.4 51 911-961 10-69 (94)
401 PF02284 COX5A: Cytochrome c o 54.7 65 0.0014 27.2 6.7 46 893-938 39-84 (108)
402 PF14853 Fis1_TPR_C: Fis1 C-te 53.9 48 0.001 24.2 5.4 37 799-837 4-40 (53)
403 KOG4507 Uncharacterized conser 52.9 1.1E+02 0.0024 34.5 10.2 112 681-794 592-706 (886)
404 KOG2062 26S proteasome regulat 51.9 4.7E+02 0.01 30.9 26.1 121 669-792 508-634 (929)
405 COG5159 RPN6 26S proteasome re 51.7 2.9E+02 0.0062 28.4 13.7 31 701-731 10-40 (421)
406 KOG0545 Aryl-hydrocarbon recep 51.2 1.5E+02 0.0033 29.6 9.7 51 911-961 242-292 (329)
407 cd02679 MIT_spastin MIT: domai 50.0 18 0.00039 28.9 2.9 65 881-961 3-67 (79)
408 KOG2063 Vacuolar assembly/sort 49.7 3.9E+02 0.0086 32.8 14.9 26 697-722 507-532 (877)
409 PF06957 COPI_C: Coatomer (COP 49.6 45 0.00097 36.7 6.8 108 806-931 214-332 (422)
410 KOG0545 Aryl-hydrocarbon recep 49.3 1.1E+02 0.0023 30.6 8.4 96 767-867 181-297 (329)
411 PRK13342 recombination factor 49.2 4.2E+02 0.009 29.7 14.8 116 711-845 154-279 (413)
412 PRK15180 Vi polysaccharide bio 48.7 1.2E+02 0.0026 33.3 9.4 137 808-948 301-442 (831)
413 PHA02875 ankyrin repeat protei 48.6 4.3E+02 0.0092 29.5 17.2 12 508-519 298-309 (413)
414 KOG4521 Nuclear pore complex, 48.5 3.1E+02 0.0068 34.1 13.5 112 766-885 922-1072(1480)
415 PF09477 Type_III_YscG: Bacter 47.5 1.4E+02 0.0031 25.5 7.6 49 773-824 49-97 (116)
416 PF00244 14-3-3: 14-3-3 protei 47.4 73 0.0016 32.2 7.6 73 915-1001 142-223 (236)
417 KOG1308 Hsp70-interacting prot 47.4 22 0.00049 37.0 3.9 83 806-893 124-208 (377)
418 KOG0686 COP9 signalosome, subu 46.9 4.1E+02 0.0089 29.0 12.7 59 192-250 151-215 (466)
419 PF13929 mRNA_stabil: mRNA sta 46.5 2.2E+02 0.0048 29.5 10.5 111 273-383 144-263 (292)
420 KOG0376 Serine-threonine phosp 46.3 43 0.00094 36.8 6.0 86 704-792 14-100 (476)
421 COG3947 Response regulator con 45.6 90 0.0019 32.0 7.5 60 798-859 281-341 (361)
422 PF08424 NRDE-2: NRDE-2, neces 44.9 4.2E+02 0.0091 28.4 16.6 65 793-859 62-130 (321)
423 PF13762 MNE1: Mitochondrial s 44.7 99 0.0022 28.3 7.1 78 92-169 41-128 (145)
424 PRK13800 putative oxidoreducta 44.4 7.5E+02 0.016 31.1 22.3 92 865-959 787-878 (897)
425 KOG0292 Vesicle coat complex C 44.1 35 0.00077 40.2 5.1 74 876-960 652-725 (1202)
426 PF09477 Type_III_YscG: Bacter 43.3 1.5E+02 0.0034 25.3 7.3 80 236-318 20-99 (116)
427 cd08819 CARD_MDA5_2 Caspase ac 43.0 1.2E+02 0.0027 24.8 6.5 39 776-816 48-86 (88)
428 PRK13342 recombination factor 42.3 5.2E+02 0.011 28.9 14.2 44 391-434 229-275 (413)
429 PF10345 Cohesin_load: Cohesin 42.0 6.7E+02 0.014 29.9 29.9 47 777-824 547-605 (608)
430 COG5187 RPN7 26S proteasome re 41.3 2.6E+02 0.0057 28.7 9.9 64 797-860 116-184 (412)
431 COG2912 Uncharacterized conser 41.1 89 0.0019 31.9 6.9 59 905-963 187-245 (269)
432 KOG2063 Vacuolar assembly/sort 40.8 6.9E+02 0.015 30.8 15.1 57 93-149 310-374 (877)
433 KOG1464 COP9 signalosome, subu 40.2 4.1E+02 0.009 26.9 15.1 187 706-893 39-258 (440)
434 COG2909 MalT ATP-dependent tra 39.6 7.9E+02 0.017 30.0 25.4 51 707-757 471-525 (894)
435 PF10366 Vps39_1: Vacuolar sor 39.5 1.6E+02 0.0034 25.5 7.3 55 94-149 3-67 (108)
436 KOG2034 Vacuolar sorting prote 38.6 8.1E+02 0.018 29.8 21.5 62 564-629 392-453 (911)
437 PF11663 Toxin_YhaV: Toxin wit 37.9 30 0.00064 30.8 2.6 41 798-840 97-137 (140)
438 PF08311 Mad3_BUB1_I: Mad3/BUB 37.6 1.6E+02 0.0035 26.3 7.4 44 644-687 81-124 (126)
439 cd08819 CARD_MDA5_2 Caspase ac 37.4 2E+02 0.0042 23.7 6.8 65 343-409 22-86 (88)
440 PF10366 Vps39_1: Vacuolar sor 36.7 1.6E+02 0.0036 25.4 7.0 28 289-316 40-67 (108)
441 TIGR02710 CRISPR-associated pr 36.6 1.9E+02 0.0041 31.5 8.9 55 802-856 136-196 (380)
442 PF15015 NYD-SP12_N: Spermatog 36.2 2.3E+02 0.005 30.8 9.1 35 955-998 309-343 (569)
443 KOG2659 LisH motif-containing 35.9 4.4E+02 0.0096 26.2 10.4 16 877-892 113-128 (228)
444 PF09986 DUF2225: Uncharacteri 35.9 4.5E+02 0.0098 26.1 11.1 25 833-857 120-144 (214)
445 KOG0687 26S proteasome regulat 35.4 4.4E+02 0.0096 27.8 10.6 94 797-892 105-206 (393)
446 PF15469 Sec5: Exocyst complex 35.3 3.5E+02 0.0075 26.0 10.0 86 836-937 91-177 (182)
447 cd00280 TRFH Telomeric Repeat 34.9 3.7E+02 0.008 25.8 9.2 47 906-953 118-164 (200)
448 PF14689 SPOB_a: Sensor_kinase 34.2 78 0.0017 24.0 4.1 23 801-823 28-50 (62)
449 KOG0037 Ca2+-binding protein, 34.2 4.7E+02 0.01 25.8 13.9 58 176-247 144-201 (221)
450 PRK10564 maltose regulon perip 34.0 65 0.0014 33.3 4.8 39 224-262 259-297 (303)
451 PF11846 DUF3366: Domain of un 33.5 1E+02 0.0022 30.0 6.2 35 896-930 141-175 (193)
452 PF12862 Apc5: Anaphase-promot 33.1 1.3E+02 0.0029 25.0 5.9 25 835-859 45-69 (94)
453 KOG2300 Uncharacterized conser 32.8 7.5E+02 0.016 27.8 17.0 119 705-824 334-473 (629)
454 KOG1497 COP9 signalosome, subu 32.6 6.1E+02 0.013 26.7 12.3 59 835-893 107-170 (399)
455 PRK10564 maltose regulon perip 32.6 63 0.0014 33.4 4.4 40 291-330 260-299 (303)
456 PHA02537 M terminase endonucle 32.6 4E+02 0.0086 26.8 9.8 20 912-931 191-210 (230)
457 PF14689 SPOB_a: Sensor_kinase 32.5 56 0.0012 24.8 3.1 44 814-859 8-51 (62)
458 KOG4077 Cytochrome c oxidase, 32.2 2E+02 0.0044 25.4 6.6 47 609-655 67-113 (149)
459 PF04781 DUF627: Protein of un 32.0 98 0.0021 26.7 4.7 35 920-954 65-99 (111)
460 PF11846 DUF3366: Domain of un 31.4 1.4E+02 0.0029 29.2 6.6 51 843-893 120-170 (193)
461 KOG0991 Replication factor C, 31.1 5.1E+02 0.011 25.9 9.8 143 466-632 137-279 (333)
462 KOG3807 Predicted membrane pro 30.4 4E+02 0.0087 27.9 9.4 116 712-838 234-354 (556)
463 COG4941 Predicted RNA polymera 30.1 6.9E+02 0.015 26.5 11.8 122 812-937 272-403 (415)
464 PF11848 DUF3368: Domain of un 30.0 1.4E+02 0.0031 21.2 4.6 33 299-331 13-45 (48)
465 KOG1524 WD40 repeat-containing 29.9 2.3E+02 0.0049 31.7 8.0 28 901-928 604-631 (737)
466 KOG2062 26S proteasome regulat 29.0 1.1E+03 0.023 28.3 39.1 212 770-1003 507-725 (929)
467 KOG0551 Hsp90 co-chaperone CNS 28.9 5.9E+02 0.013 27.0 10.3 89 801-892 86-178 (390)
468 PF08311 Mad3_BUB1_I: Mad3/BUB 28.7 2.8E+02 0.0061 24.7 7.5 44 543-586 81-124 (126)
469 cd02680 MIT_calpain7_2 MIT: do 28.5 78 0.0017 25.1 3.3 32 780-824 3-34 (75)
470 PF12968 DUF3856: Domain of Un 28.3 4.2E+02 0.009 23.4 9.5 23 937-959 104-126 (144)
471 PRK11619 lytic murein transgly 27.8 1.1E+03 0.024 28.2 36.8 240 708-965 255-508 (644)
472 PF11848 DUF3368: Domain of un 27.4 2E+02 0.0043 20.4 5.0 36 230-265 10-45 (48)
473 PF11663 Toxin_YhaV: Toxin wit 26.5 86 0.0019 28.0 3.5 34 704-739 105-138 (140)
474 PF09670 Cas_Cas02710: CRISPR- 26.3 1.8E+02 0.004 32.0 7.1 53 840-894 140-196 (379)
475 PF11838 ERAP1_C: ERAP1-like C 25.6 8.2E+02 0.018 25.9 14.5 81 745-825 146-230 (324)
476 PF10516 SHNi-TPR: SHNi-TPR; 25.4 1.3E+02 0.0028 20.2 3.4 28 934-961 2-29 (38)
477 KOG0292 Vesicle coat complex C 24.9 7.2E+02 0.016 30.2 11.2 131 771-927 650-781 (1202)
478 PF10475 DUF2450: Protein of u 24.3 5.7E+02 0.012 26.9 10.1 107 802-917 104-215 (291)
479 PF09454 Vps23_core: Vps23 cor 23.8 1.2E+02 0.0026 23.3 3.5 54 216-270 2-55 (65)
480 KOG0508 Ankyrin repeat protein 23.4 8E+02 0.017 27.4 10.5 36 701-736 344-383 (615)
481 PF10373 EST1_DNA_bind: Est1 D 23.1 91 0.002 32.5 4.0 36 918-953 1-36 (278)
482 KOG4279 Serine/threonine prote 22.6 4.6E+02 0.0099 31.0 9.0 145 798-958 203-369 (1226)
483 PF13934 ELYS: Nuclear pore co 22.4 8E+02 0.017 24.6 15.9 107 798-913 78-186 (226)
484 COG5108 RPO41 Mitochondrial DN 22.4 3.6E+02 0.0078 31.3 8.1 59 290-351 67-131 (1117)
485 cd00280 TRFH Telomeric Repeat 22.2 2.5E+02 0.0054 26.8 5.9 24 801-824 116-139 (200)
486 smart00777 Mad3_BUB1_I Mad3/BU 22.2 3.4E+02 0.0074 24.2 6.6 42 814-855 81-123 (125)
487 PHA03100 ankyrin repeat protei 21.6 1.2E+03 0.026 26.4 15.0 20 264-283 180-199 (480)
488 KOG1811 Predicted Zn2+-binding 21.0 9E+02 0.02 27.7 10.6 98 869-969 558-656 (1141)
489 PF11817 Foie-gras_1: Foie gra 21.0 1.8E+02 0.0039 29.7 5.4 75 781-855 162-242 (247)
490 PF10255 Paf67: RNA polymerase 21.0 1.7E+02 0.0037 32.2 5.4 62 730-791 123-191 (404)
491 cd08326 CARD_CASP9 Caspase act 20.8 4.5E+02 0.0097 21.5 6.5 45 770-815 36-80 (84)
492 COG4941 Predicted RNA polymera 20.7 6E+02 0.013 27.0 8.7 86 811-899 311-398 (415)
493 COG3914 Spy Predicted O-linked 20.7 4.5E+02 0.0097 30.2 8.4 97 807-908 78-185 (620)
494 TIGR02996 rpt_mate_G_obs repea 20.2 2.8E+02 0.006 19.2 4.1 37 920-956 3-39 (42)
495 KOG2659 LisH motif-containing 20.2 6.8E+02 0.015 25.0 8.6 20 874-893 71-90 (228)
496 PF11817 Foie-gras_1: Foie gra 20.1 5E+02 0.011 26.5 8.4 59 765-823 179-245 (247)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.3e-113 Score=1048.70 Aligned_cols=727 Identities=33% Similarity=0.595 Sum_probs=698.5
Q ss_pred CCCchhHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhcCCCCcchHHHH
Q 001763 118 DRDILAWNSILSMYSKRGSFENVFKSFGLLCNRGGVPNGFTFAIVLSACSKSMDVSYGRQLHCHVIELGFESSSFCKGAL 197 (1017)
Q Consensus 118 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 197 (1017)
.++..++|++|++|++.|++++|+.+|+.|.+.|+.|+..+|..++++|.+.+.++.|.++|..+.+.|..++..++|+|
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 56777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCchhHHHhhhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHH
Q 001763 198 IDMYAKLNNVSDARRVFDGAVDLDTVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEAR 277 (1017)
Q Consensus 198 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 277 (1017)
|++|+++|+++.|.++|++|.++|+++||+||.+|++.|++++|+++|++|...|
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g------------------------- 182 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG------------------------- 182 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcC-------------------------
Confidence 9999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHhcCCCCccchHHHHHHHhccCCchHHHHHHHHHHhcCCCCChhhHHHHHHHHhcccchhHHHHHHHHHHHhCCCCc
Q 001763 278 ELFAQMQNPNVVAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSN 357 (1017)
Q Consensus 278 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 357 (1017)
+.||..||+.++++|+..++++.+.++|..+.+.|+.+|
T Consensus 183 -----------------------------------------~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~ 221 (857)
T PLN03077 183 -----------------------------------------VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELD 221 (857)
T ss_pred -----------------------------------------CCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcc
Confidence 677777777777777777888888889999999999999
Q ss_pred hhhhHHHHHHHHccCChhHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHhhhhcCCCCChhcHHHHHHhhhcc
Q 001763 358 VYVASSLINMYAKCEKMESAKKVFDSLDERNAVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACL 437 (1017)
Q Consensus 358 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 437 (1017)
..++++||.+|+++|++++|.++|++|+++|.++||+||.+|++.|++++|+++|.+|.+.|+.||..||+.++.+|++.
T Consensus 222 ~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~ 301 (857)
T PLN03077 222 VDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELL 301 (857)
T ss_pred cchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHhhHHHHHHHHHhcCCchhhHHHHHHHHhhccCChhHHHHHHhhcCCCCcccchhhhHHhHhcCCHHHHHHHHHHhh
Q 001763 438 EYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFRRMN 517 (1017)
Q Consensus 438 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 517 (1017)
|+++.|.++|..+.+.|+.||..+||+|+.+|+++|++++|.++|++|..+|.++||+||.+|++.|++++|+++|++|.
T Consensus 302 g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~ 381 (857)
T PLN03077 302 GDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALME 381 (857)
T ss_pred CChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccHHHHHHHhhcccCCCcchhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCCCCCchhHHH
Q 001763 518 LVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNA 597 (1017)
Q Consensus 518 ~~g~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~ 597 (1017)
+.|+.||..||+.++.+|++.|+++.|.++|+.+.+.|+.+ +..++++|+++|+++|++++|.++|++|.+
T Consensus 382 ~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-------- 452 (857)
T PLN03077 382 QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS-YVVVANALIEMYSKCKCIDKALEVFHNIPE-------- 452 (857)
T ss_pred HhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHhCCC--------
Confidence 99999999999999999999999999999999999999998 999999999999999999999999888875
Q ss_pred HHHHHhhCCchHHHHHHHHHHHcCCCCChHHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Q 001763 598 LIAGYAQNNVEDAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKR 677 (1017)
Q Consensus 598 li~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 677 (1017)
T Consensus 453 -------------------------------------------------------------------------------- 452 (857)
T PLN03077 453 -------------------------------------------------------------------------------- 452 (857)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHhhCCCCCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHH
Q 001763 678 NTDARLLFTEFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFH 757 (1017)
Q Consensus 678 ~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 757 (1017)
++.++||+||.+|++.|+.++|+.+|++|.. +++||.+||.+++.+|++.|+++.++++|..+.+
T Consensus 453 --------------~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~ 517 (857)
T PLN03077 453 --------------KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR 517 (857)
T ss_pred --------------CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH
Confidence 4555666666667777777888888888875 5899999999999999999999999999999999
Q ss_pred hCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHH
Q 001763 758 TGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGV 837 (1017)
Q Consensus 758 ~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 837 (1017)
.|+.+|..++++|+++|+++|++++|.++|+.+ .++.+ +||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.+
T Consensus 518 ~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~-s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~l 595 (857)
T PLN03077 518 TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVV-SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISL 595 (857)
T ss_pred hCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChh-hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHH
Confidence 999999999999999999999999999999999 88888 9999999999999999999999999999999999999999
Q ss_pred HHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchH
Q 001763 838 LTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIR 917 (1017)
Q Consensus 838 ~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 917 (1017)
+.+|++.|++++|.++|+.|.+++|+.|+.+||+||+++|+|+|+++||++++++|+++||..+|.+|+++|+.+|+.+.
T Consensus 596 l~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~ 675 (857)
T PLN03077 596 LCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVEL 675 (857)
T ss_pred HHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH
Confidence 99999999999999999999977999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCCccCCceeEEEECCEEEEEecCCCCCCChHHHHH
Q 001763 918 GRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVKKFPGCSWIVLGQNTNFFVAGDTSHPNADRICA 997 (1017)
Q Consensus 918 a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~g~s~i~~~~~~~~f~~~d~~~~~~~~~~~ 997 (1017)
|+.+++++++++|+++..|+.|+|+|+..|+|++|.++|+.|+++|++|.||||||+++|++|.|++||++||++++||.
T Consensus 676 ~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~ 755 (857)
T PLN03077 676 GELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINT 755 (857)
T ss_pred HHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccCCCC
Q 001763 998 VLEDLTASMEKESYFPEID 1016 (1017)
Q Consensus 998 ~l~~l~~~~~~~~~~~~~~ 1016 (1017)
+|++|.++|++.||+|+|+
T Consensus 756 ~l~~l~~~~~~~g~~~~~~ 774 (857)
T PLN03077 756 VLEGFYEKMKASGLAGSES 774 (857)
T ss_pred HHHHHHHHHHhCCcCCCcc
Confidence 9999999999999999974
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.9e-90 Score=839.61 Aligned_cols=702 Identities=24% Similarity=0.379 Sum_probs=655.9
Q ss_pred CCCCCcchhHHHHHHHhcCCchhHHHHhcccCC----CCchhHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHH
Q 001763 86 FGSKGLLGNAIVDLYAKCGIANLAEKVFDRLED----RDILAWNSILSMYSKRGSFENVFKSFGLLCNRGGVPNGFTFAI 161 (1017)
Q Consensus 86 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 161 (1017)
..+++..+|.++..|++.|++++|..+|++|+. |+..+|+.++.++.+.+.++.+..++..+.+.|..++...+++
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 356677899999999999999999999999965 7888999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHcCCCchhHHHhhhcCC----CCCcchHHHHHHHHHHcCC
Q 001763 162 VLSACSKSMDVSYGRQLHCHVIELGFESSSFCKGALIDMYAKLNNVSDARRVFDGAV----DLDTVSWTSMIAGYVQAGL 237 (1017)
Q Consensus 162 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~ 237 (1017)
++.+|++.|+++.|.++++.|. +||..+||++|.+|++.|++++|.++|++|. .||.+||+.+|.+|+..++
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~ 202 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccc
Confidence 9999999999999999999996 4899999999999999999999999999874 5999999999999999999
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHhcCCCCccchHHHHHHHhccCCchHHHHHHHHHHhc
Q 001763 238 PEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEARELFAQMQNPNVVAWNVMISGHAKRGYDAEAVNYFKRMRKA 317 (1017)
Q Consensus 238 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 317 (1017)
++.+.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+||.++||++|.+|++.|++++|+++|++|.+.
T Consensus 203 ~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~ 282 (857)
T PLN03077 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL 282 (857)
T ss_pred hhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHhcccchhHHHHHHHHHHHhCCCCchhhhHHHHHHHHccCChhHHHHHHhhcCCCCcchHHHHHH
Q 001763 318 GVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFDSLDERNAVLWNALLG 397 (1017)
Q Consensus 318 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 397 (1017)
|+.||..||+.++.+|++.|+++.|.++|..+.+.|+.||..+|++||.+|+++|++++|.++|++|.++|.++||+||.
T Consensus 283 g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~ 362 (857)
T PLN03077 283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMIS 362 (857)
T ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCChhHHHHHHHhhhhcCCCCChhcHHHHHHhhhcccchHhhHHHHHHHHHhcCCchhhHHHHHHHHhhccCChhH
Q 001763 398 GYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEE 477 (1017)
Q Consensus 398 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 477 (1017)
+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|+.+.+.|+.++..++++|+++|+++|++++
T Consensus 363 ~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~ 442 (857)
T PLN03077 363 GYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDK 442 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCcccchhhhHHhHhcCCHHHHHHHHHHhhccCCCCCcccHHHHHHHhhcccCCCcchhHHHHHhhhCCC
Q 001763 478 ARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLE 557 (1017)
Q Consensus 478 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~ 557 (1017)
|.++|++|.++|.++||+||.+|+++|+.++|+.+|++|.. ++.||..||+.+|.+|++.|+++.++++|..+++.|+.
T Consensus 443 A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~ 521 (857)
T PLN03077 443 ALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIG 521 (857)
T ss_pred HHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999985 69999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHhcCCCCCchhHHHHHHHHhhCCch-HHHHHHHHHHHcCCCCChHHHHHHHHhc
Q 001763 558 TSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNVE-DAVVLYRGMQTEGLSPNDITFTSLLDAC 636 (1017)
Q Consensus 558 ~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~-~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 636 (1017)
+ +..++++|+++|+++|++++|.++|+.+ .+|+++||+||.+|+++|.. +|+++|++|.+.|++||.+||++++.+|
T Consensus 522 ~-~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 599 (857)
T PLN03077 522 F-DGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC 599 (857)
T ss_pred c-cceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Confidence 9 9999999999999999999999999999 89999999999999999998 9999999999999999999999999999
Q ss_pred cCCCccchhhHHHHHHH-HhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCCceeehhhhhhcccCCCchHHHH
Q 001763 637 DGPYKFHLGTQIHCLIV-KKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPNPKSTVLWTAVISGHAQNDSNYEALH 715 (1017)
Q Consensus 637 ~~~~~~~~a~~~~~~~~-~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 715 (1017)
++.|++++|.++++.|. +.|+. |+..+|++++++|++.|++++|.+++++|+
T Consensus 600 ~~~g~v~ea~~~f~~M~~~~gi~-P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-------------------------- 652 (857)
T PLN03077 600 SRSGMVTQGLEYFHSMEEKYSIT-PNLKHYACVVDLLGRAGKLTEAYNFINKMP-------------------------- 652 (857)
T ss_pred hhcChHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhCCCHHHHHHHHHHCC--------------------------
Confidence 99999999999999999 67887 666777777777777777766666666654
Q ss_pred HHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCCh
Q 001763 716 FYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNY 795 (1017)
Q Consensus 716 ~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~ 795 (1017)
++||..+|.+|+.+|...++.+.|+...+.+.+..+. +...|..|.++|++.|+|++|.++++.|++++.
T Consensus 653 ---------~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~-~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~ 722 (857)
T PLN03077 653 ---------ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPN-SVGYYILLCNLYADAGKWDEVARVRKTMRENGL 722 (857)
T ss_pred ---------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-CcchHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Confidence 4899999999999999999999999999999888776 788899999999999999999999999987544
Q ss_pred h----HHHH-------HHHHHHHhCCCHHHHH----HHHHHHHHCCCCCCh
Q 001763 796 V----ISWN-------SMIVGFAKNGYAEDAL----KVFHEMKETQAMPDD 831 (1017)
Q Consensus 796 ~----~~~~-------~l~~~~~~~g~~~~A~----~~~~~m~~~g~~p~~ 831 (1017)
. .+|. .++.+-..|.+.++.. ++..+|.+.|+.||.
T Consensus 723 ~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~ 773 (857)
T PLN03077 723 TVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSE 773 (857)
T ss_pred CCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCc
Confidence 3 3553 2233334455554443 466677888888875
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-82 Score=757.44 Aligned_cols=526 Identities=32% Similarity=0.586 Sum_probs=516.6
Q ss_pred CCCcccchhhhHHhHhcCCHHHHHHHHHHhhccC-CCCCcccHHHHHHHhhcccCCCcchhHHHHHhhhCCCCCchHHHH
Q 001763 487 NQDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVG-IVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGS 565 (1017)
Q Consensus 487 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 565 (1017)
.++.++|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.+.++|..+.+.|+.+ +..+++
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n 162 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMN 162 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHH
Confidence 3567899999999999999999999999998765 78999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCCCCCchhHHHHHHHHhhCCch-HHHHHHHHHHHcCCCCChHHHHHHHHhccCCCccch
Q 001763 566 SLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNVE-DAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHL 644 (1017)
Q Consensus 566 ~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~-~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 644 (1017)
.|+++|+++|++++|.++|++|++||+++||++|.+|++.|.. +|+++|++|.+.|+.||..||..++.+|...|+.+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 9999999999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCCceeehhhhhhcccCCCchHHHHHHHHHHHCC
Q 001763 645 GTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHN 724 (1017)
Q Consensus 645 a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 724 (1017)
+.+++..+.+.|+. ++..+++.|+++|+++|++++|.++|++|+. +++++||+||.+|++.|+.++|+++|++|.+.|
T Consensus 243 ~~~l~~~~~~~g~~-~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 243 GQQLHCCVLKTGVV-GDTFVSCALIDMYSKCGDIEDARCVFDGMPE-KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHHHhCCC-ccceeHHHHHHHHHHCCCHHHHHHHHHhCCC-CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999997 8999999999999999999999999999998 899999999999999999999999999999999
Q ss_pred CCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCChhHHHHHHHH
Q 001763 725 VLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIV 804 (1017)
Q Consensus 725 ~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 804 (1017)
+.||..||++++++|++.|++++|+++|+.+.+.|+.+|..++++|+++|+++|++++|.++|++|.++|.+ +||+||.
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~-t~n~lI~ 399 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI-SWNALIA 399 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCee-eHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 9999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHH
Q 001763 805 GFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLK 884 (1017)
Q Consensus 805 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~ 884 (1017)
+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+++|+.|+..||++|+++|+++|+++
T Consensus 400 ~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~ 479 (697)
T PLN03081 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479 (697)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHH
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCC
Q 001763 885 EAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGV 964 (1017)
Q Consensus 885 eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 964 (1017)
||.+++++|+..|+..+|++|+.+|+.+|+++.|+.+++++++++|++...|+.|+++|++.|+|++|.++++.|+++|+
T Consensus 480 eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 480 EAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHhcCccCCCC
Q 001763 965 KKFPGCSWIVLGQNTNFFVAGDTSHPNADRICAVLEDLTASMEKESYFPEID 1016 (1017)
Q Consensus 965 ~~~~g~s~i~~~~~~~~f~~~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 1016 (1017)
+|.||+|||++++++|.|++||++||++++||++|++|..+|++.||+|+++
T Consensus 560 ~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 560 SMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred ccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999975
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.4e-67 Score=628.23 Aligned_cols=512 Identities=26% Similarity=0.434 Sum_probs=464.2
Q ss_pred CCCCchhHHHHHHHHHcCCChhhHHHHHHHHHhCC-CCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhcCCCCcchHH
Q 001763 117 EDRDILAWNSILSMYSKRGSFENVFKSFGLLCNRG-GVPNGFTFAIVLSACSKSMDVSYGRQLHCHVIELGFESSSFCKG 195 (1017)
Q Consensus 117 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 195 (1017)
..++.++|+++|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.|.++|..|.+.|+.||..++|
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 35577899999999999999999999999999864 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCchhHHHhhhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHH
Q 001763 196 ALIDMYAKLNNVSDARRVFDGAVDLDTVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDE 275 (1017)
Q Consensus 196 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 275 (1017)
.|+++|+++|++++|+++|++|..||+++||++|.+|++.|++++|+++|++|.+.|
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g----------------------- 219 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDG----------------------- 219 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC-----------------------
Confidence 999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHhcCCCCccchHHHHHHHhccCCchHHHHHHHHHHhcCCCCChhhHHHHHHHHhcccchhHHHHHHHHHHHhCCC
Q 001763 276 ARELFAQMQNPNVVAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLY 355 (1017)
Q Consensus 276 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 355 (1017)
+.||..||..++.+|+..|..+.+.++|..+.+.|+.
T Consensus 220 -------------------------------------------~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~ 256 (697)
T PLN03081 220 -------------------------------------------SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVV 256 (697)
T ss_pred -------------------------------------------CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCC
Confidence 6667777777777777778888888888999999999
Q ss_pred CchhhhHHHHHHHHccCChhHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHhhhhcCCCCChhcHHHHHHhhh
Q 001763 356 SNVYVASSLINMYAKCEKMESAKKVFDSLDERNAVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCA 435 (1017)
Q Consensus 356 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 435 (1017)
+|..++++||++|+++|++++|.++|+.|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|+
T Consensus 257 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~ 336 (697)
T PLN03081 257 GDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS 336 (697)
T ss_pred ccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHhhHHHHHHHHHhcCCchhhHHHHHHHHhhccCChhHHHHHHhhcCCCCcccchhhhHHhHhcCCHHHHHHHHHH
Q 001763 436 CLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFRR 515 (1017)
Q Consensus 436 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 515 (1017)
+.|.++.|.++|+.|.+.|+.+|..++++|+++|+++|++++|.++|++|.++|.++||+||.+|+++|+.++|+++|++
T Consensus 337 ~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~ 416 (697)
T PLN03081 337 RLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFER 416 (697)
T ss_pred hccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCcccHHHHHHHhhcccCCCcchhHHHHHhh-hCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCCCCCchh
Q 001763 516 MNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVK-TSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVS 594 (1017)
Q Consensus 516 m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~ 594 (1017)
|.+.|+.||..||+.++.+|++.|.+++|.++|..+.+ .|+.| +..+|++++++|++.|++++|.++|++|+
T Consensus 417 M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p-~~~~y~~li~~l~r~G~~~eA~~~~~~~~------ 489 (697)
T PLN03081 417 MIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP-RAMHYACMIELLGREGLLDEAYAMIRRAP------ 489 (697)
T ss_pred HHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC-CccchHhHHHHHHhcCCHHHHHHHHHHCC------
Confidence 99999999999999999999999999999999999976 68888 99999999999999999999999999887
Q ss_pred HHHHHHHHhhCCchHHHHHHHHHHHcCCCCChHHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHh
Q 001763 595 MNALIAGYAQNNVEDAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMN 674 (1017)
Q Consensus 595 ~~~li~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 674 (1017)
++||..+|++++.+|...|+++.|..+++.+.+.+ |.+...|..|+++|++
T Consensus 490 ---------------------------~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~--p~~~~~y~~L~~~y~~ 540 (697)
T PLN03081 490 ---------------------------FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG--PEKLNNYVVLLNLYNS 540 (697)
T ss_pred ---------------------------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC--CCCCcchHHHHHHHHh
Confidence 67788888888888888888888888877776444 6677888888888999
Q ss_pred cCChHHHHHHHhhCCC----CCCceeehhhh-------hhcccCCC----chHHHHHHHHHHHCCCCcCHH
Q 001763 675 SKRNTDARLLFTEFPN----PKSTVLWTAVI-------SGHAQNDS----NYEALHFYREMRSHNVLPDQA 730 (1017)
Q Consensus 675 ~g~~~~A~~~~~~~~~----~~~~~~~~~li-------~~~~~~g~----~~~A~~~~~~m~~~~~~pd~~ 730 (1017)
.|++++|.++++.|.. ...-.+|..+. .+-..+.+ +++..++..+|.+.|+.||..
T Consensus 541 ~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 541 SGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred CCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 9999999998888775 12334564332 22111222 344567788889999999854
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.3e-66 Score=615.82 Aligned_cols=532 Identities=15% Similarity=0.224 Sum_probs=478.3
Q ss_pred CCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhcC-CCCcchHHHHHHHHHcCCCchhHHHhhhcCCCCCcchHHHHHH
Q 001763 152 GVPNGFTFAIVLSACSKSMDVSYGRQLHCHVIELGF-ESSSFCKGALIDMYAKLNNVSDARRVFDGAVDLDTVSWTSMIA 230 (1017)
Q Consensus 152 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~ 230 (1017)
..++...|..++..|++.|++++|.++++.|.+.|+ .++..+++.++..|++.|.+++|.++|+.|..||..+||.+|.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 346778899999999999999999999999999996 5677888999999999999999999999999999999999999
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHhcC----CCCccchHHHHHHHhccCCchH
Q 001763 231 GYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEARELFAQMQ----NPNVVAWNVMISGHAKRGYDAE 306 (1017)
Q Consensus 231 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~ 306 (1017)
+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 999999999999999999999999999999999999999999999999999998 4899999999999999999999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHhcccchhHHHHHHHHHHH--hCCCCchhhhHHHHHHHHccCChhHHHHHHhhc
Q 001763 307 AVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIK--QGLYSNVYVASSLINMYAKCEKMESAKKVFDSL 384 (1017)
Q Consensus 307 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 384 (1017)
|.++|++|.+.|+.||..||+.+|.+|++.|+++.|.+++++|.. .|+.||..+|++||.+|+++|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987 678999999999999999999999999999999
Q ss_pred CCC----CcchHHHHHHHHHhCCChhHHHHHHHhhhhcCCCCChhcHHHHHHhhhcccchHhhHHHHHHHHHhcCCchhh
Q 001763 385 DER----NAVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLATNLY 460 (1017)
Q Consensus 385 ~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~ 460 (1017)
.+. +..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.|+.|+..
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 864 5689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCChhHHHHHHhhcC----CCCcccchhhhHHhHhcCCHHHHHHHHHHhhccCCCCCcccHHHHHHHhh
Q 001763 461 VGNALVDMYAKSRALEEARKQFERIQ----NQDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACA 536 (1017)
Q Consensus 461 ~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~ 536 (1017)
+|++||.+|+++|++++|.++|++|. .||.++||.||.+|++.|++++|+++|++|...|+.||..||+.++.+|+
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999995 58999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcchhHHHHHhhhCCCCCchHHHHHHHHHH----HHcCCHHHHHHHHhcCCCCCchhHHHHHHHHhhCCchHHHH
Q 001763 537 NIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMY----VKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNVEDAVV 612 (1017)
Q Consensus 537 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y----~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~A~~ 612 (1017)
+.|+++.|.++|..+.+.|+.| +..+|++|++++ .+++...++...|+.+...+...|+. +|+.
T Consensus 766 k~G~le~A~~l~~~M~k~Gi~p-d~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~-----------~Al~ 833 (1060)
T PLN03218 766 RKDDADVGLDLLSQAKEDGIKP-NLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTS-----------WALM 833 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHH-----------HHHH
Confidence 9999999999999999999999 999999999874 34444444444444333233333332 7999
Q ss_pred HHHHHHHcCCCCChHHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCC
Q 001763 613 LYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPNPK 692 (1017)
Q Consensus 613 l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 692 (1017)
+|++|++.|+.||..||..++.++...+..+.+..+++.+...+. ++
T Consensus 834 lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~---------------------------------~~ 880 (1060)
T PLN03218 834 VYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISAD---------------------------------SQ 880 (1060)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCC---------------------------------Cc
Confidence 999999999999999999999655454444444444333322222 26
Q ss_pred CceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHH
Q 001763 693 STVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQA 730 (1017)
Q Consensus 693 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~ 730 (1017)
+..+|+++|.++.+. .++|+.+|++|...|+.|+..
T Consensus 881 ~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 881 KQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred chhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 677888888887432 367999999999999888864
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.4e-63 Score=592.18 Aligned_cols=537 Identities=18% Similarity=0.231 Sum_probs=408.7
Q ss_pred CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCChhhHHHHHHHHhccCCHHHHHHHHHhcCCCCccchHHHHHHH
Q 001763 220 LDTVSWTSMIAGYVQAGLPEAAFELFEKMIKVGC-VPDQVAFVTVINVCFNLGRLDEARELFAQMQNPNVVAWNVMISGH 298 (1017)
Q Consensus 220 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~ 298 (1017)
++...|..++..+++.|++++|+++|++|.+.|+ .++..+++.++.+|.+.|.+++|..+|+.|..||..+|+.+|.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4566788888888888888888888888888875 467777778888888888888888888888888888888888888
Q ss_pred hccCCchHHHHHHHHHHhcCCCCChhhHHHHHHHHhcccchhHHHHHHHHHHHhCCCCchhhhHHHHHHHHccCChhHHH
Q 001763 299 AKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAK 378 (1017)
Q Consensus 299 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 378 (1017)
++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.+++++|.+.|+.||..+|+.||.+|++
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k-------- 519 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR-------- 519 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--------
Confidence 888888888888888888777776666666666666666666666666666655555555555555555554
Q ss_pred HHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHhhhhcCCCCChhcHHHHHHhhhcccchHhhHHHHHHHHH--hcCC
Q 001763 379 KVFDSLDERNAVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIK--NKLA 456 (1017)
Q Consensus 379 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--~~~~ 456 (1017)
.|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+ .|+.
T Consensus 520 -----------------------~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~ 576 (1060)
T PLN03218 520 -----------------------AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPID 576 (1060)
T ss_pred -----------------------CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCC
Confidence 455555555556666667777777777777777777777777777777765 4667
Q ss_pred chhhHHHHHHHHhhccCChhHHHHHHhhcCC----CCcccchhhhHHhHhcCCHHHHHHHHHHhhccCCCCCcccHHHHH
Q 001763 457 TNLYVGNALVDMYAKSRALEEARKQFERIQN----QDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASIL 532 (1017)
Q Consensus 457 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll 532 (1017)
||..+|+++|.+|+++|++++|.++|+.|.+ ++..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++
T Consensus 577 PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI 656 (1060)
T PLN03218 577 PDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALV 656 (1060)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 7777777777777777777777777777764 345778888888888888888888888888888888888888888
Q ss_pred HHhhcccCCCcchhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCC----CCCchhHHHHHHHHhhCCch
Q 001763 533 SACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMP----QRNVVSMNALIAGYAQNNVE 608 (1017)
Q Consensus 533 ~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~ 608 (1017)
.+|++.|++++|.+++..+.+.|+.+ +..+|++|+++|+++|++++|.++|++|. .||+++||+||.+|++.|..
T Consensus 657 ~a~~k~G~~eeA~~l~~eM~k~G~~p-d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~ 735 (1060)
T PLN03218 657 DVAGHAGDLDKAFEILQDARKQGIKL-GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQL 735 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 88888888888888888888888888 99999999999999999999999999995 58999999999999999998
Q ss_pred -HHHHHHHHHHHcCCCCChHHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhh
Q 001763 609 -DAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTE 687 (1017)
Q Consensus 609 -~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 687 (1017)
+|+++|++|...|+.||..||++++.+|++.|+++.|.+++..+.+.|+. ++..++++++.++.+ ++++|.++.+.
T Consensus 736 eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~-pd~~tynsLIglc~~--~y~ka~~l~~~ 812 (1060)
T PLN03218 736 PKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIK-PNLVMCRCITGLCLR--RFEKACALGEP 812 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHH--HHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999998 889999999887542 34444444332
Q ss_pred CCCCCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchH
Q 001763 688 FPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITG 767 (1017)
Q Consensus 688 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 767 (1017)
+.. |+. +......+..++|+.+|++|++.|+.||..||..++.++...+..+.+..+++.+...+..++..
T Consensus 813 v~~------f~~-g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~-- 883 (1060)
T PLN03218 813 VVS------FDS-GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQS-- 883 (1060)
T ss_pred hhh------hhc-cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchh--
Confidence 221 110 11112223346799999999999999999999999966656666665555555554444444444
Q ss_pred hHHHhHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChH
Q 001763 768 SALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDV 832 (1017)
Q Consensus 768 ~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 832 (1017)
+|++++.++.+. .++|..+|++|.+.|+.|+..
T Consensus 884 ------------------------------~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 884 ------------------------------NLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred ------------------------------hhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 455555554221 246777777777777777653
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.9e-47 Score=477.14 Aligned_cols=845 Identities=12% Similarity=0.010 Sum_probs=712.9
Q ss_pred HHHHHHhcCCchhHHHHhcccC---CCCchhHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHhhcCCCh
Q 001763 96 IVDLYAKCGIANLAEKVFDRLE---DRDILAWNSILSMYSKRGSFENVFKSFGLLCNRGGVPNGFTFAIVLSACSKSMDV 172 (1017)
Q Consensus 96 li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 172 (1017)
....|...|+++.|...|+... ..+...|..+...|.+.|++++|...|+++.+.+.. +......+..++...|++
T Consensus 28 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~g~~ 106 (899)
T TIGR02917 28 AAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYP-KNQVLPLLARAYLLQGKF 106 (899)
T ss_pred HHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-hhhhHHHHHHHHHHCCCH
Confidence 4567788899999999998763 335668888999999999999999999999987653 445566777888899999
Q ss_pred hHHHHHHHHHHHhcCCCCcchHHHHHHHHHcCCCchhHHHhhhcCCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHH
Q 001763 173 SYGRQLHCHVIELGFESSSFCKGALIDMYAKLNNVSDARRVFDGAVD---LDTVSWTSMIAGYVQAGLPEAAFELFEKMI 249 (1017)
Q Consensus 173 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 249 (1017)
+.|...+..............+..+...|.+.|++++|.+.|+.... .+...|..+...+...|++++|.++++++.
T Consensus 107 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 186 (899)
T TIGR02917 107 QQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVL 186 (899)
T ss_pred HHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999887665334445567788888999999999999999987644 456678889999999999999999999998
Q ss_pred HcCCCCChhhHHHHHHHHhccCCHHHHHHHHHhcCC---CCccchHHHHHHHhccCCchHHHHHHHHHHhcCCCCChhhH
Q 001763 250 KVGCVPDQVAFVTVINVCFNLGRLDEARELFAQMQN---PNVVAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTL 326 (1017)
Q Consensus 250 ~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 326 (1017)
... +++...+..+...+...|++++|...|++..+ .+..++..++..+...|++++|...++.+.+.... +....
T Consensus 187 ~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~ 264 (899)
T TIGR02917 187 TAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SPLAH 264 (899)
T ss_pred HhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHH
Confidence 865 56778899999999999999999999998864 45667888999999999999999999999885322 22233
Q ss_pred HHHHHHHhcccchhHHHHHHHHHHHhCCCCchhhhHHHHHHHHccCChhHHHHHHhhcCC---CCcchHHHHHHHHHhCC
Q 001763 327 GSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFDSLDE---RNAVLWNALLGGYSQNC 403 (1017)
Q Consensus 327 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 403 (1017)
......+...|+++.|...+..+.+.+.. +...+..+...+...|++++|...|+.+.+ .+...+..+...+...|
T Consensus 265 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 343 (899)
T TIGR02917 265 YLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLG 343 (899)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCC
Confidence 33333456789999999999999887644 233444556778899999999999998754 35567888889999999
Q ss_pred ChhHHHHHHHhhhhcCCCCChhcHHHHHHhhhcccchHhhHHHHHHHHHhcCCchhhHHHHHHHHhhccCChhHHHHHHh
Q 001763 404 YAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFE 483 (1017)
Q Consensus 404 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 483 (1017)
++++|+..+.++.+.. ..+...+..+...+...|++++|...++.+.+... .+...+..+...+...|++++|...|+
T Consensus 344 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~ 421 (899)
T TIGR02917 344 RVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLE 421 (899)
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 9999999999987653 34566777888889999999999999999887642 356677788888999999999999999
Q ss_pred hcCCC---CcccchhhhHHhHhcCCHHHHHHHHHHhhccCCCCCcccHHHHHHHhhcccCCCcchhHHHHHhhhCCCCCc
Q 001763 484 RIQNQ---DNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSN 560 (1017)
Q Consensus 484 ~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~ 560 (1017)
.+... +...+..++..|.+.|++++|+.+++++... ..++..++..+...+...|+.+++.+.+..+++.. |.+
T Consensus 422 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~ 498 (899)
T TIGR02917 422 TAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PDF 498 (899)
T ss_pred HHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCc
Confidence 87653 2345667888999999999999999999864 34566788888889999999999999999988754 446
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHhcCCC---CCchhHHHHHHHHhhCCch-HHHHHHHHHHHcCCCCChHHHHHHHHhc
Q 001763 561 IYVGSSLIDMYVKCGFIGAAHKVLSCMPQ---RNVVSMNALIAGYAQNNVE-DAVVLYRGMQTEGLSPNDITFTSLLDAC 636 (1017)
Q Consensus 561 ~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~-~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 636 (1017)
...+..++..|...|++++|.+.|+++.. .+..++..+...+.+.|.. +|...|+++...+ +.+...+..+...+
T Consensus 499 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 577 (899)
T TIGR02917 499 FPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYY 577 (899)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHH
Confidence 77888999999999999999999998864 4566888888889888888 9999999998763 34556778888999
Q ss_pred cCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCC--CCCceeehhhhhhcccCCCchHHH
Q 001763 637 DGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYEAL 714 (1017)
Q Consensus 637 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~ 714 (1017)
...|++++|.++++.+.+.. |.+...+..++..|.+.|++++|...|+.+.. |.+...|..++..|.+.|++++|+
T Consensus 578 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 655 (899)
T TIGR02917 578 LGKGQLKKALAILNEAADAA--PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAI 655 (899)
T ss_pred HHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998766 67889999999999999999999999998764 567788999999999999999999
Q ss_pred HHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--
Q 001763 715 HFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE-- 792 (1017)
Q Consensus 715 ~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~-- 792 (1017)
..|+++.+.. +.+..++..+...+...|++++|..+++.+.+..+. +...+..++..|.+.|++++|.+.|+.+..
T Consensus 656 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 733 (899)
T TIGR02917 656 TSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKRA 733 (899)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 9999998753 345778889999999999999999999999988765 778899999999999999999999998875
Q ss_pred CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHH
Q 001763 793 RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCA 871 (1017)
Q Consensus 793 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 871 (1017)
++.. .+..++..+...|++++|++.++++++. .|+. ..+..+...|...|++++|.++|+++.+. .+++...+.
T Consensus 734 ~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~ 808 (899)
T TIGR02917 734 PSSQ-NAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLN 808 (899)
T ss_pred CCch-HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 4444 7888999999999999999999999995 4554 68888999999999999999999999873 244677899
Q ss_pred HHHHhhhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCc
Q 001763 872 CMVDLLGRWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNW 949 (1017)
Q Consensus 872 ~l~~~l~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~ 949 (1017)
.+..++...|+ ++|++.+++. ...| ++..|..++.++...|++++|...++++++++|.++.++..++++|.+.|++
T Consensus 809 ~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 887 (899)
T TIGR02917 809 NLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRK 887 (899)
T ss_pred HHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH
Confidence 99999999999 8899999886 4455 5568888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 001763 950 NEVNTLRREMR 960 (1017)
Q Consensus 950 ~~a~~~~~~m~ 960 (1017)
++|.+++++|.
T Consensus 888 ~~A~~~~~~~~ 898 (899)
T TIGR02917 888 AEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHh
Confidence 99999999886
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.9e-44 Score=452.67 Aligned_cols=826 Identities=10% Similarity=0.034 Sum_probs=696.7
Q ss_pred CchhHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhcCCCCcchHHHHHH
Q 001763 120 DILAWNSILSMYSKRGSFENVFKSFGLLCNRGGVPNGFTFAIVLSACSKSMDVSYGRQLHCHVIELGFESSSFCKGALID 199 (1017)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 199 (1017)
+...+-.....+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+.+.+.. +......+..
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~a~ 98 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQKD-PNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYP-KNQVLPLLAR 98 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-hhhhHHHHHH
Confidence 44455567788889999999999999998753 345667777888899999999999999999998764 4556677888
Q ss_pred HHHcCCCchhHHHhhhcCCC----CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHH
Q 001763 200 MYAKLNNVSDARRVFDGAVD----LDTVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDE 275 (1017)
Q Consensus 200 ~~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 275 (1017)
.|...|++++|..++..... .+...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++
T Consensus 99 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~ 177 (899)
T TIGR02917 99 AYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID-PRSLYAKLGLAQLALAENRFDE 177 (899)
T ss_pred HHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHCCCHHH
Confidence 99999999999999987652 235567888889999999999999999998875 3456788899999999999999
Q ss_pred HHHHHHhcCC---CCccchHHHHHHHhccCCchHHHHHHHHHHhcCCCCChhhHHHHHHHHhcccchhHHHHHHHHHHHh
Q 001763 276 ARELFAQMQN---PNVVAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQ 352 (1017)
Q Consensus 276 A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 352 (1017)
|..+++++.+ ++...+..+...+...|++++|...|++..+.. ..+..++..+...+...|+++.|...++.+.+.
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 256 (899)
T TIGR02917 178 ARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKK 256 (899)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999865 456678888899999999999999999998742 234567778888889999999999999999987
Q ss_pred CCCCchhhhHHHHHHHHccCChhHHHHHHhhcCCCC---cchHHHHHHHHHhCCChhHHHHHHHhhhhcCCCCChhcHHH
Q 001763 353 GLYSNVYVASSLINMYAKCEKMESAKKVFDSLDERN---AVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTS 429 (1017)
Q Consensus 353 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 429 (1017)
... +..........+...|++++|...|+.+.+.+ ...+..+...+...|++++|...|.+..+.. ..+...+..
T Consensus 257 ~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~ 334 (899)
T TIGR02917 257 APN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRL 334 (899)
T ss_pred CCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 654 33344444556678899999999999876532 3445566778889999999999999988742 234455666
Q ss_pred HHHhhhcccchHhhHHHHHHHHHhcCCchhhHHHHHHHHhhccCChhHHHHHHhhcCCC---CcccchhhhHHhHhcCCH
Q 001763 430 ILSSCACLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQNQ---DNVSWNAIIVGYVQEGDV 506 (1017)
Q Consensus 430 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~ 506 (1017)
+...+...|+++.|...+..+.+.. +.+...+..+...|.+.|++++|...|+++.+. +...|..+...+...|++
T Consensus 335 la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 413 (899)
T TIGR02917 335 LASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDP 413 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCh
Confidence 7778889999999999999988765 345677888999999999999999999988652 345677888899999999
Q ss_pred HHHHHHHHHhhccCCCCCcccHHHHHHHhhcccCCCcchhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhc
Q 001763 507 FEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSC 586 (1017)
Q Consensus 507 ~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 586 (1017)
++|++.|+++......+ ......+...+...|+.+++..++..+.+.. |++..++..++..|...|++++|.+.|++
T Consensus 414 ~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 490 (899)
T TIGR02917 414 SEAIADLETAAQLDPEL-GRADLLLILSYLRSGQFDKALAAAKKLEKKQ--PDNASLHNLLGAIYLGKGDLAKAREAFEK 490 (899)
T ss_pred HHHHHHHHHHHhhCCcc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999998754222 2345556678889999999999999887643 33778899999999999999999999998
Q ss_pred CCC---CCchhHHHHHHHHhhCCch-HHHHHHHHHHHcCCCCChHHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCch
Q 001763 587 MPQ---RNVVSMNALIAGYAQNNVE-DAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDD 662 (1017)
Q Consensus 587 ~~~---~~~~~~~~li~~~~~~~~~-~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~ 662 (1017)
+.+ .+...+..+...+...|.. +|.+.|+++...+ +.+..++..+...+...|+.+++...+..+.+.+ |.+.
T Consensus 491 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~ 567 (899)
T TIGR02917 491 ALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN--PQEI 567 (899)
T ss_pred HHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccch
Confidence 754 3455677778888888887 9999999998863 3456788888888899999999999999998876 6788
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhhCCC--CCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHh
Q 001763 663 FLHIALLSMYMNSKRNTDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACA 740 (1017)
Q Consensus 663 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~ 740 (1017)
..+..++..|.+.|++++|..+++.+.. |.+...|..++.+|.+.|++++|+..|+++.+.. +.+...+..+..++.
T Consensus 568 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 646 (899)
T TIGR02917 568 EPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYA 646 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 8999999999999999999999998865 5677899999999999999999999999998753 335667888889999
Q ss_pred ccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHH
Q 001763 741 VLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKV 818 (1017)
Q Consensus 741 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 818 (1017)
..|++++|...++.+.+..+. +...+..++..+...|++++|.++++.+.. ++....|..++..+...|++++|++.
T Consensus 647 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 725 (899)
T TIGR02917 647 VMKNYAKAITSLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQA 725 (899)
T ss_pred HcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999988765 788999999999999999999999999876 33334788899999999999999999
Q ss_pred HHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC-CCC-
Q 001763 819 FHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL-TFE- 896 (1017)
Q Consensus 819 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~- 896 (1017)
|+++.+. .|+..++..++.++.+.|++++|.+.++.+.+. .+.+...+..++.+|.+.|++++|.+.++++ ...
T Consensus 726 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 801 (899)
T TIGR02917 726 YRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP 801 (899)
T ss_pred HHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC
Confidence 9999994 577777888999999999999999999999883 3445678889999999999999999999986 344
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCCc
Q 001763 897 PDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVK 965 (1017)
Q Consensus 897 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 965 (1017)
+++.++..++..+...|+ ++|+..+++++++.|+++..+..++.+|...|++++|.+.++++.+.+..
T Consensus 802 ~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 802 DNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 467789999999999999 88999999999999999999999999999999999999999999987653
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=1.3e-25 Score=281.31 Aligned_cols=663 Identities=11% Similarity=0.037 Sum_probs=429.7
Q ss_pred HHHHHHHHHcCCCchhHHHhhhcCCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhcc
Q 001763 194 KGALIDMYAKLNNVSDARRVFDGAVD---LDTVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNL 270 (1017)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 270 (1017)
.-..+..+-..++.+.|++.+++... .|+..+..++..+.+.|+.++|.+.+++..+.. |+...+..+...+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~--- 105 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTM--- 105 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHH---
Confidence 34455566677777777777765432 345566777777777777777777777777654 3222221100000
Q ss_pred CCHHHHHHHHHhcCCCCccchHHHHHHHhccCCchHHHHHHHHHHhcCCCCChhh-HHHHHHHHhcccchhHHHHHHHHH
Q 001763 271 GRLDEARELFAQMQNPNVVAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRST-LGSVLSGISSLAALDFGLIVHAEA 349 (1017)
Q Consensus 271 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~ 349 (1017)
....|+......+...+.+.|++++|++.|+++.+.+ .|+... ...........++.+.|...++.+
T Consensus 106 -----------~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~l 173 (1157)
T PRK11447 106 -----------LLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRL 173 (1157)
T ss_pred -----------HhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHH
Confidence 0011222222334445666777777777777776531 222111 111111122346677777777777
Q ss_pred HHhCCCCchhhhHHHHHHHHccCChhHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHhhhhcCCCCChh-cHH
Q 001763 350 IKQGLYSNVYVASSLINMYAKCEKMESAKKVFDSLDERNAVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDF-TYT 428 (1017)
Q Consensus 350 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~ 428 (1017)
++..+. +...+..+...+...|+.++|++.|+++...... ....+...+..+...+..++.. .+.
T Consensus 174 l~~~P~-~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~-------------~~~aa~~~~~~l~~~~~~~~~~~~l~ 239 (1157)
T PRK11447 174 NADYPG-NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAG-------------RDAAAQLWYGQIKDMPVSDASVAALQ 239 (1157)
T ss_pred HHhCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCc-------------hHHHHHHHHHHHhccCCChhhHHHHH
Confidence 766543 5566777888888888888888888876543211 0111111222222222222211 122
Q ss_pred HHHHhhhcccchHhhHHHHHHHHHhcCCchhhHHHHHHHHhhccCChhHHHHHHhhcCC--C-CcccchhhhHHhHhcCC
Q 001763 429 SILSSCACLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQN--Q-DNVSWNAIIVGYVQEGD 505 (1017)
Q Consensus 429 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~ 505 (1017)
..+..+........+...+.........|... .......+...|++++|+..|++..+ | +...+..+...|.+.|+
T Consensus 240 ~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~ 318 (1157)
T PRK11447 240 KYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGD 318 (1157)
T ss_pred HHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 22222333333444555554443332233221 12334556778999999999988764 2 45678888889999999
Q ss_pred HHHHHHHHHHhhccCCCCCccc---HHHHHHHhhcccCCCcchhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHH
Q 001763 506 VFEAFNMFRRMNLVGIVPDDVS---SASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHK 582 (1017)
Q Consensus 506 ~~~A~~~~~~m~~~g~~pd~~t---~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~ 582 (1017)
+++|+..|++..+. .|+... +..++... .......+.+.+.+.|++++|..
T Consensus 319 ~~eA~~~l~~Al~~--~p~~~~~~~~~~ll~~~------------------------~~~~~~~~g~~~~~~g~~~eA~~ 372 (1157)
T PRK11447 319 RARAVAQFEKALAL--DPHSSNRDKWESLLKVN------------------------RYWLLIQQGDAALKANNLAQAER 372 (1157)
T ss_pred HHHHHHHHHHHHHh--CCCccchhHHHHHHHhh------------------------hHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999998764 333211 11111000 11112233555666777777777
Q ss_pred HHhcCCCCCchhHHHHHHHHhhCCchHHHHHHHHHHHcCCCCC-hHHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCc
Q 001763 583 VLSCMPQRNVVSMNALIAGYAQNNVEDAVVLYRGMQTEGLSPN-DITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDD 661 (1017)
Q Consensus 583 ~~~~~~~~~~~~~~~li~~~~~~~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~ 661 (1017)
.|+++.. . .|+ ...+..+...+...|++++|.+.+..+++.. |.+
T Consensus 373 ~~~~Al~------------------------------~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~ 418 (1157)
T PRK11447 373 LYQQARQ------------------------------V--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGN 418 (1157)
T ss_pred HHHHHHH------------------------------h--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCC
Confidence 6665542 1 222 2333444445555566666666666666554 566
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHhhCCCC--C---------CceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcC-H
Q 001763 662 DFLHIALLSMYMNSKRNTDARLLFTEFPNP--K---------STVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPD-Q 729 (1017)
Q Consensus 662 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd-~ 729 (1017)
...+..++.+|. .++.++|...++.++.. . ....+..+...+...|++++|++.|++.++. .|+ .
T Consensus 419 ~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~ 495 (1157)
T PRK11447 419 TNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSV 495 (1157)
T ss_pred HHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCH
Confidence 666777777774 45678888888776530 0 0123455677788899999999999999885 454 4
Q ss_pred HhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCCh----h--------H
Q 001763 730 ATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNY----V--------I 797 (1017)
Q Consensus 730 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~----~--------~ 797 (1017)
..+..+...+...|++++|...++.+++..+. ++..+..+...+...|+.++|+..++.+..... . .
T Consensus 496 ~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~ 574 (1157)
T PRK11447 496 WLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSD 574 (1157)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhh
Confidence 56677888999999999999999999987765 677777788888899999999999998865221 1 0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCc-CchhHHHHHH
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPD-DVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQP-RVDHCACMVD 875 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~ 875 (1017)
.+..++..+...|+.++|+++++. .|+ ...+..+...+.+.|++++|+..|+++++ ..| +...+..++.
T Consensus 575 ~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~ 645 (1157)
T PRK11447 575 QVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIE 645 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHH
Confidence 123567788999999999999872 344 35677889999999999999999999988 455 4677889999
Q ss_pred hhhccCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCc------hHHHHHHHHHhcC
Q 001763 876 LLGRWGFLKEAEEFIEQLT-FEPD-SRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPS------PYVQLSNIYAALG 947 (1017)
Q Consensus 876 ~l~~~g~~~eA~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~------~~~~l~~~y~~~g 947 (1017)
+|...|++++|++.+++.. ..|+ ..++..+..++...|+.++|...++++++..|+++. .+..++.+|...|
T Consensus 646 ~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G 725 (1157)
T PRK11447 646 VDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTG 725 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcC
Confidence 9999999999999999864 5554 557777888888999999999999999999876553 5667899999999
Q ss_pred CcHHHHHHHHHHHH
Q 001763 948 NWNEVNTLRREMRE 961 (1017)
Q Consensus 948 ~~~~a~~~~~~m~~ 961 (1017)
++++|++.+++...
T Consensus 726 ~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 726 QPQQALETYKDAMV 739 (1157)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999887753
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=3.6e-26 Score=286.19 Aligned_cols=588 Identities=12% Similarity=0.050 Sum_probs=402.2
Q ss_pred chHHHHHHHhccCCchHHHHHHHHHHhcCCCCChh-----------------hHHHHHHHHhcccchhHHHHHHHHHHHh
Q 001763 290 AWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRS-----------------TLGSVLSGISSLAALDFGLIVHAEAIKQ 352 (1017)
Q Consensus 290 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-----------------t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 352 (1017)
.+..++..+.+.|+.++|.+.++++.+ +.|+.. ......+.+...|++++|.+.++.+.+.
T Consensus 64 ~~~~~~~~~l~~g~~~~A~~~l~~l~~--~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~ 141 (1157)
T PRK11447 64 VIAARFRLLLRQGDSDGAQKLLDRLSQ--LAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNG 141 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccC
Confidence 344444444455555555555555554 333332 2233444567778888888888888765
Q ss_pred CCCCchhhhHHHHHHHHccCChhHHHHHHhhcCCC---CcchHHHHHHHHHhCCChhHHHHHHHhhhhcCCCCChhcHHH
Q 001763 353 GLYSNVYVASSLINMYAKCEKMESAKKVFDSLDER---NAVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTS 429 (1017)
Q Consensus 353 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 429 (1017)
...........+.......|+.++|++.++++.+. +...+..+...+...|+.++|+..|+++.+.. +..
T Consensus 142 ~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~--~~~----- 214 (1157)
T PRK11447 142 APPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSP--AGR----- 214 (1157)
T ss_pred CCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC--Cch-----
Confidence 43322111111112223457888888888877653 45567777788888888888888888876531 110
Q ss_pred HHHhhhcccchHhhHHHHHHHHHhcCCc-hhhHHHHHHHHhhccCChhHHHHHHhhcCCC--Ccc-cchhhhHHhHhcCC
Q 001763 430 ILSSCACLEYLEMGRQLHAVIIKNKLAT-NLYVGNALVDMYAKSRALEEARKQFERIQNQ--DNV-SWNAIIVGYVQEGD 505 (1017)
Q Consensus 430 ll~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~ 505 (1017)
...+...+..+...+..+ ....+...+..+-....++.|...+.+.... |.. ........+...|+
T Consensus 215 ----------~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~ 284 (1157)
T PRK11447 215 ----------DAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQ 284 (1157)
T ss_pred ----------HHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCC
Confidence 011111112221111111 1122233333333334455565555543221 111 11233455667788
Q ss_pred HHHHHHHHHHhhccCCCCCcccHHHHHHHhhcccCCCcchhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHh
Q 001763 506 VFEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLS 585 (1017)
Q Consensus 506 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~ 585 (1017)
+++|+..|++..+. .|+ +..++..|...|.+.|++++|+..|+
T Consensus 285 ~~~A~~~l~~aL~~--~P~-----------------------------------~~~a~~~Lg~~~~~~g~~~eA~~~l~ 327 (1157)
T PRK11447 285 GGKAIPELQQAVRA--NPK-----------------------------------DSEALGALGQAYSQQGDRARAVAQFE 327 (1157)
T ss_pred HHHHHHHHHHHHHh--CCC-----------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888888877763 343 77788888889999999999998888
Q ss_pred cCCCCCc-----hhHHHHHHHHhhCCchHHHHHHHHHHHcCCCCChHHHHHHHHhccCCCccchhhHHHHHHHHhCCCCC
Q 001763 586 CMPQRNV-----VSMNALIAGYAQNNVEDAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFD 660 (1017)
Q Consensus 586 ~~~~~~~-----~~~~~li~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~ 660 (1017)
+..+.++ ..|..++... ...........+...|++++|...+..+++.. |.
T Consensus 328 ~Al~~~p~~~~~~~~~~ll~~~----------------------~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~--P~ 383 (1157)
T PRK11447 328 KALALDPHSSNRDKWESLLKVN----------------------RYWLLIQQGDAALKANNLAQAERLYQQARQVD--NT 383 (1157)
T ss_pred HHHHhCCCccchhHHHHHHHhh----------------------hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CC
Confidence 7653211 1232222110 00001112334567899999999999999986 68
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHhhCCC--CCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCc--------CHH
Q 001763 661 DDFLHIALLSMYMNSKRNTDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLP--------DQA 730 (1017)
Q Consensus 661 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--------d~~ 730 (1017)
+..++..++.+|...|++++|++.|+++.. |.+...+..+...|. .++.++|+.+++++....... ...
T Consensus 384 ~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~ 462 (1157)
T PRK11447 384 DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQND 462 (1157)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhh
Confidence 888999999999999999999999999775 566667777777774 467899999887764321000 012
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHh
Q 001763 731 TFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAK 808 (1017)
Q Consensus 731 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~ 808 (1017)
.+..+...+...|++++|...++++++..+. ++.++..++.+|.+.|++++|+..++++.. ++....+..+...+..
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~ 541 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSG 541 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 3445667788899999999999999998887 778889999999999999999999998865 4444466777777788
Q ss_pred CCCHHHHHHHHHHHHHCCCCCChH---------hHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhc
Q 001763 809 NGYAEDALKVFHEMKETQAMPDDV---------TFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGR 879 (1017)
Q Consensus 809 ~g~~~~A~~~~~~m~~~g~~p~~~---------~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~ 879 (1017)
.|+.++|+..++++......++.. .+..+...+...|+.++|+++++. .+++...+..+.+.|.+
T Consensus 542 ~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~ 615 (1157)
T PRK11447 542 SDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQ 615 (1157)
T ss_pred CCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHH
Confidence 999999999999875533333221 234566778999999999999872 24456677889999999
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHH
Q 001763 880 WGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRR 957 (1017)
Q Consensus 880 ~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 957 (1017)
.|++++|++.+++. ...| +...+..++..+...|+.++|+..++++++..|+++..+..++.+|...|++++|.++++
T Consensus 616 ~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 695 (1157)
T PRK11447 616 RGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFN 695 (1157)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999986 4566 566899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCc
Q 001763 958 EMREKGVK 965 (1017)
Q Consensus 958 ~m~~~~~~ 965 (1017)
++.+...+
T Consensus 696 ~al~~~~~ 703 (1157)
T PRK11447 696 RLIPQAKS 703 (1157)
T ss_pred HHhhhCcc
Confidence 98876543
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=9.3e-25 Score=259.30 Aligned_cols=629 Identities=12% Similarity=0.021 Sum_probs=396.5
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHhcCC--CCccchHHHHHHHhccCCchHHHHHHHH
Q 001763 236 GLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEARELFAQMQN--PNVVAWNVMISGHAKRGYDAEAVNYFKR 313 (1017)
Q Consensus 236 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~ 313 (1017)
|++++|+..|++..+.. +-+...+..+...|.+.|+.++|+..+++..+ |+-..|..++..+ +++++|..+|++
T Consensus 58 Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~ 133 (987)
T PRK09782 58 NDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEE 133 (987)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHH
Confidence 66666666666666654 22244555556666666666666666555543 3222222222111 555555555555
Q ss_pred HHhcCCCCChhhHHHHHHHHhcccchhHHHHHHHHHHHhCCCCchhhhHHHHHH--------HHccCChhHHHHHHhhcC
Q 001763 314 MRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINM--------YAKCEKMESAKKVFDSLD 385 (1017)
Q Consensus 314 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~ 385 (1017)
+.+ ..|+ +..++..+... |.+.+...++++ .+..
T Consensus 134 l~~--~~P~----------------------------------n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~ 175 (987)
T PRK09782 134 LLA--QQKA----------------------------------CDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATF 175 (987)
T ss_pred HHH--hCCC----------------------------------ChhHHHHHHHHhhccchhhhhhHHHHHHHHH--Hhhh
Confidence 554 2332 33333333333 555555555554 2222
Q ss_pred CCC--cc-hHHHHHHHHHhCCChhHHHHHHHhhhhcCCCCChhcHHHHHHhhhcccchHhhHHHHHHHHHhcCCchhhHH
Q 001763 386 ERN--AV-LWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLATNLYVG 462 (1017)
Q Consensus 386 ~~~--~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 462 (1017)
.++ .. ..-.+...|.+.+++++|++++.++.+.+..... -...+-.+
T Consensus 176 ~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~-~~~~L~~a----------------------------- 225 (987)
T PRK09782 176 AASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAA-ERRQWFDV----------------------------- 225 (987)
T ss_pred CCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHH-HHHHHHHH-----------------------------
Confidence 222 22 2333367777777777777777777765422211 12222222
Q ss_pred HHHHHHhhc-cCChhHHHHHHhhcCCCCcccchhhhHHhHhcCCHHHHHHHHHHhhccCCC-CCcccHHHHHHHhhcccC
Q 001763 463 NALVDMYAK-SRALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIV-PDDVSSASILSACANIQG 540 (1017)
Q Consensus 463 ~~li~~~~~-~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd~~t~~~ll~a~~~~~~ 540 (1017)
|.. .++ +.+..+++...+.+...+..+...|.+.|+.++|.++++++...-.. |+..++.-.+.- .+.
T Consensus 226 ------y~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r---~~~ 295 (987)
T PRK09782 226 ------LLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSK---YSA 295 (987)
T ss_pred ------HHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHh---ccC
Confidence 222 122 44444444322334445555666666666666666666665543222 444444433322 222
Q ss_pred CCc-chhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCCCCCchhHHHHHHHHh--h-CCchHHHHHHHH
Q 001763 541 LPQ-GEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYA--Q-NNVEDAVVLYRG 616 (1017)
Q Consensus 541 ~~~-~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~--~-~~~~~A~~l~~~ 616 (1017)
... +..-+.. .+.+.-....-.+++.+.+.+.++.|.++.+.-+ .+.. ..+.... . .+..++.+.++.
T Consensus 296 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~r~~~~~~~~~~~~~~~~~~~ 367 (987)
T PRK09782 296 NPVQALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLATLP-ANEM---LEERYAVSVATRNKAEALRLARL 367 (987)
T ss_pred chhhhccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCC-cchH---HHHHHhhccccCchhHHHHHHHH
Confidence 210 0000000 1111022233445899999999998888755332 2221 2222222 2 233388888888
Q ss_pred HHHcCCCCChHHHHHHHHhccCCCccchhhHHHHHHHHh-CCCCCchHHHHHHHHHHHhcCChHH---HHHH--------
Q 001763 617 MQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKK-GLLFDDDFLHIALLSMYMNSKRNTD---ARLL-------- 684 (1017)
Q Consensus 617 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~---A~~~-------- 684 (1017)
|.+.. .-+......+-.-....|+.++|.+++...... +-...+......++++|.+.+.+.. |..+
T Consensus 368 ~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 446 (987)
T PRK09782 368 LYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAE 446 (987)
T ss_pred HHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccch
Confidence 77651 112233323333344678899999998888763 2111345566688899988877322 2222
Q ss_pred -----------------HhhCCC--CC--CceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccC
Q 001763 685 -----------------FTEFPN--PK--STVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLS 743 (1017)
Q Consensus 685 -----------------~~~~~~--~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~ 743 (1017)
+..... |. +...|..++.++.. +++++|+..|.+.... .|+......+..++...|
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~G 523 (987)
T PRK09782 447 QRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVE 523 (987)
T ss_pred hHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCC
Confidence 111111 44 66778888888877 8999999988888775 577655555556667899
Q ss_pred cHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCChh--HHHHHHHHHHHhCCCHHHHHHHHHH
Q 001763 744 SLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYV--ISWNSMIVGFAKNGYAEDALKVFHE 821 (1017)
Q Consensus 744 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~ 821 (1017)
++++|...++.+.... |+...+..++.++.+.|++++|...+++....+.. ..+..+.......|++++|+..+++
T Consensus 524 r~eeAi~~~rka~~~~--p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~ 601 (987)
T PRK09782 524 DYATALAAWQKISLHD--MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTR 601 (987)
T ss_pred CHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999876543 34455778888999999999999999988764332 2333344445566999999999999
Q ss_pred HHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcC-chhHHHHHHhhhccCCHHHHHHHHHhC-CCCC-C
Q 001763 822 MKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPR-VDHCACMVDLLGRWGFLKEAEEFIEQL-TFEP-D 898 (1017)
Q Consensus 822 m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p-~ 898 (1017)
.++ ..|+...+..+..++.+.|++++|+..|++.++ +.|+ ...+..+..+|...|++++|++.+++. ...| +
T Consensus 602 AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~ 676 (987)
T PRK09782 602 SLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD 676 (987)
T ss_pred HHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 999 578877889999999999999999999999987 5665 567888899999999999999999885 5667 5
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCCc
Q 001763 899 SRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVK 965 (1017)
Q Consensus 899 ~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 965 (1017)
+..|.+++.++...|+++.|+..++++++++|+++.+....+++..+..+++.|.+.+++.-.-.+.
T Consensus 677 ~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 677 PALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 6689999999999999999999999999999999999999999999999999999988766655443
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=2.1e-24 Score=256.25 Aligned_cols=666 Identities=10% Similarity=-0.013 Sum_probs=414.9
Q ss_pred CCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHcCCCchhHHHhhhcCCCCCc--chHHHHHHHHHHcCChhHHHHHHH
Q 001763 169 SMDVSYGRQLHCHVIELGFESSSFCKGALIDMYAKLNNVSDARRVFDGAVDLDT--VSWTSMIAGYVQAGLPEAAFELFE 246 (1017)
Q Consensus 169 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~ 246 (1017)
.|++++|...++.+++..... ..++..|...|.+.|+.++|+..+++..+.|+ .-|..++..+ +++++|..+++
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye 132 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVE 132 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHH
Confidence 377777777777777765333 66777788888888888888888877665333 2233323222 88888888888
Q ss_pred HHHHcCCCCChhhHHHHHHH--------HhccCCHHHHHHHHHhcCCCC--ccchHH-HHHHHhccCCchHHHHHHHHHH
Q 001763 247 KMIKVGCVPDQVAFVTVINV--------CFNLGRLDEARELFAQMQNPN--VVAWNV-MISGHAKRGYDAEAVNYFKRMR 315 (1017)
Q Consensus 247 ~m~~~g~~p~~~t~~~li~~--------~~~~g~~~~A~~~~~~m~~~~--~~~~~~-li~~~~~~g~~~~A~~~~~~m~ 315 (1017)
++.... +-+...+..+... |.+.++..++++ .+...|+ ...... +...|.+.|++++|++++.++.
T Consensus 133 ~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 133 ELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 888765 3334445444444 666655555555 3333333 333333 3677777777777777777777
Q ss_pred hcCCCCChhhHHHHHHHHhcccchhHHHHHHHHHHHhCCCCchhhhHHHHHHHHc-cCChhHHHHHHhhcCCCCcchHHH
Q 001763 316 KAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAK-CEKMESAKKVFDSLDERNAVLWNA 394 (1017)
Q Consensus 316 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~ 394 (1017)
+.+... ......|..+|.. .++ +.+..+++...+.+...+..
T Consensus 210 k~~pl~------------------------------------~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~a 252 (987)
T PRK09782 210 QQNTLS------------------------------------AAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRIT 252 (987)
T ss_pred hcCCCC------------------------------------HHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHH
Confidence 753222 2222333344444 244 55666655433456666777
Q ss_pred HHHHHHhCCChhHHHHHHHhhhhcCCC-CChhcHHHHHHhhhcccchHhhHHHHHHHHHhcCCc-hhhHHHHHHHHhhcc
Q 001763 395 LLGGYSQNCYAHEVVDLFFAMKSSGFH-ADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLAT-NLYVGNALVDMYAKS 472 (1017)
Q Consensus 395 li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~ 472 (1017)
+...|.+.|+.++|..+++++...-.. |+..++..++.-..... ..+..-+.. .+.+ -....-.++..+.+.
T Consensus 253 la~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 326 (987)
T PRK09782 253 YATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANP--VQALANYTV----QFADNRQYVVGATLPVLLKE 326 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCch--hhhccchhh----hhHHHHHHHHHHHHHHHHhc
Confidence 777777777777777777776543222 44544444433222111 001111110 0001 111223346777888
Q ss_pred CChhHHHHHHhhcCCCCcccchhhhH--HhHhcCCHHHHHHHHHHhhccCCCCCcccHHHHHHHhhcccCCCcchhHHHH
Q 001763 473 RALEEARKQFERIQNQDNVSWNAIIV--GYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCF 550 (1017)
Q Consensus 473 g~~~~A~~~f~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~ 550 (1017)
+.++.+.++.+ ....+. . ..+. +....+...++...++.|.+. .|.
T Consensus 327 ~~~~~~~~~~~-~~~~~~-~--~~~r~~~~~~~~~~~~~~~~~~~~y~~--~~~-------------------------- 374 (987)
T PRK09782 327 GQYDAAQKLLA-TLPANE-M--LEERYAVSVATRNKAEALRLARLLYQQ--EPA-------------------------- 374 (987)
T ss_pred cHHHHHHHHhc-CCCcch-H--HHHHHhhccccCchhHHHHHHHHHHhc--CCC--------------------------
Confidence 88887776633 221122 1 1222 122335555666666666553 121
Q ss_pred HhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCCC--CC----chhHHHHHHHHhhCCc---h-HHHHHHHHHHHc
Q 001763 551 SVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQ--RN----VVSMNALIAGYAQNNV---E-DAVVLYRGMQTE 620 (1017)
Q Consensus 551 ~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~---~-~A~~l~~~m~~~ 620 (1017)
+.....-+.-...+.|+.++|..+|...-. ++ ...-+-++..|...+. . +++.+-..+-..
T Consensus 375 ---------~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 445 (987)
T PRK09782 375 ---------NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLA 445 (987)
T ss_pred ---------CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccc
Confidence 333344444445566666666666665543 11 1122344455554433 1 333332211111
Q ss_pred CCCCChHHHHHHHHhccCCCccchhhHHHHHHHH-hCCCCC--chHHHHHHHHHHHhcCChHHHHHHHhhCCCCCCceee
Q 001763 621 GLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVK-KGLLFD--DDFLHIALLSMYMNSKRNTDARLLFTEFPNPKSTVLW 697 (1017)
Q Consensus 621 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 697 (1017)
+- |.-.|....+......... .+..|+ +...+..++.++.. ++.++|...+.+... ..+..|
T Consensus 446 -------~~------~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~-~~Pd~~ 510 (987)
T PRK09782 446 -------EQ------RQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQ-RQPDAW 510 (987)
T ss_pred -------hh------HHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHH-hCCchH
Confidence 11 1112233333333333222 223356 78888888888887 788888887766554 112244
Q ss_pred hhhhhhc--ccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHH
Q 001763 698 TAVISGH--AQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYA 775 (1017)
Q Consensus 698 ~~li~~~--~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~ 775 (1017)
+.+..++ .+.|++++|+..|+++... .|+...+..+..++...|+.++|...+..+++.++. +...+..+...+.
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~ 587 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRY 587 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHH
Confidence 5554444 5889999999999987654 455556667777888899999999999998887654 3344444445555
Q ss_pred hcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHH
Q 001763 776 KCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQ 852 (1017)
Q Consensus 776 ~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~ 852 (1017)
+.|++++|...+++... |+.. .|..++..+.+.|++++|+..+++.++ ..|+. ..+..+..++...|++++|++
T Consensus 588 ~~Gr~~eAl~~~~~AL~l~P~~~-a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 588 IPGQPELALNDLTRSLNIAPSAN-AYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCHH-HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 66999999999998875 5544 889999999999999999999999999 57876 567778888999999999999
Q ss_pred HHHHhhhhcCCCcC-chhHHHHHHhhhccCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCchHHHHHHHHHHhhC
Q 001763 853 IFETMVSCHGIQPR-VDHCACMVDLLGRWGFLKEAEEFIEQL-TFEPDS-RIWTTLLGACGVHRDDIRGRLAAKKLIELE 929 (1017)
Q Consensus 853 ~~~~m~~~~~~~p~-~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~ 929 (1017)
.|++.++ +.|+ ...+..+..+|.+.|++++|++.+++. ...|+. .+............+++.+...+++....+
T Consensus 665 ~l~~AL~---l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 665 MLERAHK---GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred HHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999987 4554 567888999999999999999999886 577765 466667777888888999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCcH
Q 001763 930 PENPSPYVQLSNIYAALGNWN 950 (1017)
Q Consensus 930 p~~~~~~~~l~~~y~~~g~~~ 950 (1017)
|... +....+.++...+++-
T Consensus 742 ~~~~-a~~~~g~~~~~~~~~~ 761 (987)
T PRK09782 742 FDSS-IGLRSGAMSTANNNVG 761 (987)
T ss_pred ccch-hccccchHhhhccccc
Confidence 9777 8888888888777763
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=5.3e-25 Score=228.61 Aligned_cols=386 Identities=12% Similarity=0.081 Sum_probs=336.7
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHhcCCC---CCchhHHHHHHHHhhCCch-HHHHHHHHHHHcCCCCChHHHHHHHHh
Q 001763 560 NIYVGSSLIDMYVKCGFIGAAHKVLSCMPQ---RNVVSMNALIAGYAQNNVE-DAVVLYRGMQTEGLSPNDITFTSLLDA 635 (1017)
Q Consensus 560 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~-~A~~l~~~m~~~g~~p~~~t~~~ll~a 635 (1017)
-...|..+.+.+-..|++++|...++.+.+ ..+..|..+..++...|.. .|.+.|.+.++ +.|+.....+-+.-
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgn 192 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhH
Confidence 677889999999999999999999998875 3456888888889888887 99999998887 57877665544433
Q ss_pred c-cCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCC--CCCceeehhhhhhcccCCCchH
Q 001763 636 C-DGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYE 712 (1017)
Q Consensus 636 ~-~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~ 712 (1017)
+ ...|.+++|...+-++++.. |.-..++..|+-.+-.+|+...|+..|++... |.-..+|-.|+..|...+.+++
T Consensus 193 Llka~Grl~ea~~cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchH
Confidence 3 34688999999988888876 56778899999999999999999999998776 5556789999999999999999
Q ss_pred HHHHHHHHHHCCCCcC-HHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhcc
Q 001763 713 ALHFYREMRSHNVLPD-QATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMA 791 (1017)
Q Consensus 713 A~~~~~~m~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~ 791 (1017)
|+..|.+.... .|+ .+.+..+...|...|.++.|+..+++.++..+. -+..|+.|.+++-..|+..+|.+.+++..
T Consensus 271 Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 271 AVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 99999998874 666 466777888889999999999999999998876 57899999999999999999999999887
Q ss_pred C--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCc-
Q 001763 792 E--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRV- 867 (1017)
Q Consensus 792 ~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~- 867 (1017)
. ++...+.+.+.+.|...|.+++|..+|...++ +.|.- ..++.|...|-++|++++|+..|+..+. |+|+.
T Consensus 348 ~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fA 422 (966)
T KOG4626|consen 348 RLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFA 422 (966)
T ss_pred HhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHH
Confidence 6 55556889999999999999999999999999 78887 6889999999999999999999999987 89984
Q ss_pred hhHHHHHHhhhccCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 001763 868 DHCACMVDLLGRWGFLKEAEEFIEQL-TFEPDSR-IWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAA 945 (1017)
Q Consensus 868 ~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~ 945 (1017)
..|++|...|-..|+.++|...+.+. .++|... ..++|..+++..|+..+|+..|+.+++++|+.+.+|.+|+..+.-
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~ 502 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQI 502 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHH
Confidence 68999999999999999999999886 5888655 788999999999999999999999999999999999999999998
Q ss_pred cCCcHHHHHHHH
Q 001763 946 LGNWNEVNTLRR 957 (1017)
Q Consensus 946 ~g~~~~a~~~~~ 957 (1017)
..+|.+-.+..+
T Consensus 503 vcdw~D~d~~~~ 514 (966)
T KOG4626|consen 503 VCDWTDYDKRMK 514 (966)
T ss_pred HhcccchHHHHH
Confidence 899988544333
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=9.6e-25 Score=226.71 Aligned_cols=360 Identities=13% Similarity=0.167 Sum_probs=324.4
Q ss_pred hhHHHHHHHHhhCCch-HHHHHHHHHHHcCCCCCh-HHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHH
Q 001763 593 VSMNALIAGYAQNNVE-DAVVLYRGMQTEGLSPND-ITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLS 670 (1017)
Q Consensus 593 ~~~~~li~~~~~~~~~-~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~ 670 (1017)
.+|..+...+-..|.. +|+.+++.|++ .+|+- ..|..+..++...|+.+.|.+.+...++.+ |...-+...++.
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgn 192 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhH
Confidence 4677788888888887 99999999998 46654 689999999999999999999999999988 677888889999
Q ss_pred HHHhcCChHHHHHHHhhCCC--CCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcC-HHhHHHHHHHHhccCcHHH
Q 001763 671 MYMNSKRNTDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPD-QATFVSVLRACAVLSSLRD 747 (1017)
Q Consensus 671 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd-~~t~~~ll~~~~~~~~~~~ 747 (1017)
+....|++++|...+.+... |.-.++|+.|+..+-..|+..+|+..|++... +.|+ ...|..|...+...+.+++
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchH
Confidence 99999999999998887654 56679999999999999999999999999987 4676 4678899999999999999
Q ss_pred HHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 001763 748 GGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKET 825 (1017)
Q Consensus 748 a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 825 (1017)
|...+.++....+. ...++..|.-.|..+|.+|-|+..+++..+ |+....|+.|.+++...|+..+|+..|.+.+.
T Consensus 271 Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~- 348 (966)
T KOG4626|consen 271 AVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR- 348 (966)
T ss_pred HHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH-
Confidence 99999999887776 778889999999999999999999999886 67677999999999999999999999999999
Q ss_pred CCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCc-hhHHHHHHhhhccCCHHHHHHHHHhC-CCCCCHH-H
Q 001763 826 QAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRV-DHCACMVDLLGRWGFLKEAEEFIEQL-TFEPDSR-I 901 (1017)
Q Consensus 826 g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~~~-~ 901 (1017)
+.|+. ...+.|.++|...|+.++|..+|....+ +.|+. ...+++..+|-++|++++|+.-+++. .+.|+.. .
T Consensus 349 -l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda 424 (966)
T KOG4626|consen 349 -LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADA 424 (966)
T ss_pred -hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHH
Confidence 67877 6789999999999999999999999987 67774 57899999999999999999999875 7899765 8
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCC
Q 001763 902 WTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGV 964 (1017)
Q Consensus 902 ~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 964 (1017)
+.+++..+...|+++.|+..+.+++..+|-.++++.+|+.+|...|+..+|++-++.......
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999999999999999999999999999987765433
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.89 E-value=2e-18 Score=190.50 Aligned_cols=577 Identities=15% Similarity=0.084 Sum_probs=280.4
Q ss_pred hHHHHHHHHHHhcCCCCChhhHHHHHHHHh--cccchhHHHHHHHHHHHhCC--CCchhhhHHHHHHHHccCChhHHHHH
Q 001763 305 AEAVNYFKRMRKAGVKSSRSTLGSVLSGIS--SLAALDFGLIVHAEAIKQGL--YSNVYVASSLINMYAKCEKMESAKKV 380 (1017)
Q Consensus 305 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~ 380 (1017)
+.|...|....+. .|+. ....+.++|. ..+++..+..+|..++.... .+|+.+. +..++.++|+.+.|...
T Consensus 147 ~~A~a~F~~Vl~~--sp~N-il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~~a 221 (1018)
T KOG2002|consen 147 DDADAQFHFVLKQ--SPDN-ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIG--IGHCFWKLGMSEKALLA 221 (1018)
T ss_pred HHHHHHHHHHHhh--CCcc-hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHhccchhhHHHH
Confidence 5666666655542 2221 1222333332 44566666666666554432 3444332 34567788888888888
Q ss_pred HhhcCCCCcchHHHHHHHH---Hh---CCChhHHHHHHHhhhhcCCCCChhcHHHHHHhhhcccchHhhHHHHHHHHHhc
Q 001763 381 FDSLDERNAVLWNALLGGY---SQ---NCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNK 454 (1017)
Q Consensus 381 ~~~~~~~~~~~~~~li~~~---~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 454 (1017)
|.+..+-|+..-++++... .. ...+..++.++...-.. -.-|++..+.|-..+...|+++.+..+...++...
T Consensus 222 ~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~-n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 222 FERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE-NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh-cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 8877665554433333221 11 12233444444433221 12344455556666666777777777766666554
Q ss_pred CCch--hhHHHHHHHHhhccCChhHHHHHHhhcCC--CCc--ccchhhhHHhHhcCCHHHHHHHHHHhhccCCCCCcccH
Q 001763 455 LATN--LYVGNALVDMYAKSRALEEARKQFERIQN--QDN--VSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSS 528 (1017)
Q Consensus 455 ~~~~--~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~ 528 (1017)
.... ...|--+..+|-..|+++.|...|.+... +|. ..+-.+...|.+.|+.+.+...|+...+. .||
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~---- 374 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPN---- 374 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--Ccc----
Confidence 2111 12244456666677777777777766553 222 23445566677777777777777776653 344
Q ss_pred HHHHHHhhcccCCCcchhHHHHHhhhCCCCCchHHHHHHHHHHHHcC----CHHHHHHHHhcCCCC---CchhHHHHHHH
Q 001763 529 ASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCG----FIGAAHKVLSCMPQR---NVVSMNALIAG 601 (1017)
Q Consensus 529 ~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g----~~~~A~~~~~~~~~~---~~~~~~~li~~ 601 (1017)
+..+...|...|...+ ..+.|..+..+...+ |...|-.+...
T Consensus 375 -------------------------------~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql 423 (1018)
T KOG2002|consen 375 -------------------------------NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQL 423 (1018)
T ss_pred -------------------------------hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4555555555555553 455566665555543 23344444444
Q ss_pred HhhCCchHHHHHHHHHH----HcCCCCChHHHHHHHHhccCCCccchhhHHHHHHHHh---CCCC-----CchHHHHHHH
Q 001763 602 YAQNNVEDAVVLYRGMQ----TEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKK---GLLF-----DDDFLHIALL 669 (1017)
Q Consensus 602 ~~~~~~~~A~~l~~~m~----~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~---~~~p-----~~~~~~~~l~ 669 (1017)
+-+.....++..|.... ..+-.+.....+.+....-..|+++.|...+..+... ...+ .+......++
T Consensus 424 ~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 424 LEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 44443333344443332 2333333344444444444444444444444433322 0000 0011122333
Q ss_pred HHHHhcCChHHHHHHHhhCCCCCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHh-HHHHHHHHhccCcHHHH
Q 001763 670 SMYMNSKRNTDARLLFTEFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQAT-FVSVLRACAVLSSLRDG 748 (1017)
Q Consensus 670 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t-~~~ll~~~~~~~~~~~a 748 (1017)
.++... ++.+.|.+.|...+.. .|.-+. |..++......++..+|
T Consensus 504 rl~E~l--------------------------------~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea 549 (1018)
T KOG2002|consen 504 RLLEEL--------------------------------HDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEA 549 (1018)
T ss_pred HHHHhh--------------------------------hhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHH
Confidence 333444 4444444555444442 333222 33333222233444444
Q ss_pred HHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC----C-ChhHHHHHHHHHHH------------hCCC
Q 001763 749 GEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE----R-NYVISWNSMIVGFA------------KNGY 811 (1017)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~----~-~~~~~~~~l~~~~~------------~~g~ 811 (1017)
...+..+...+-. ++.++.-+++.|.+..+|.-|.+-|..+.. . |.- +.-+|++.|. ..+.
T Consensus 550 ~~~lk~~l~~d~~-np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Y-sliaLGN~~~~~l~~~~rn~ek~kk~ 627 (1018)
T KOG2002|consen 550 SLLLKDALNIDSS-NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAY-SLIALGNVYIQALHNPSRNPEKEKKH 627 (1018)
T ss_pred HHHHHHHHhcccC-CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchh-HHHHhhHHHHHHhcccccChHHHHHH
Confidence 4444444443332 444444455555555555544443333322 1 111 2222222221 1223
Q ss_pred HHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHH
Q 001763 812 AEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFI 890 (1017)
Q Consensus 812 ~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~ 890 (1017)
.++|+++|.+.++ ..|.. ..-++++-.+++.|++++|+.+|.++++. .......|-++..+|..+|++-.|++.+
T Consensus 628 ~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmY 703 (1018)
T KOG2002|consen 628 QEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMY 703 (1018)
T ss_pred HHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHH
Confidence 4555566655555 33433 34455555555666666666666665552 2223444555555555666666666655
Q ss_pred HhCC----CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHH-------------------hcC
Q 001763 891 EQLT----FEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYA-------------------ALG 947 (1017)
Q Consensus 891 ~~~~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~-------------------~~g 947 (1017)
+..- -..++.+...|+.++...|.+.+|..++.+++.+.|.|+...++++-+.. ..+
T Consensus 704 e~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~ 783 (1018)
T KOG2002|consen 704 ENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVK 783 (1018)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 5421 12244455555555555556666666666666666666555555554433 335
Q ss_pred CcHHHHHHHHHHHHcCC
Q 001763 948 NWNEVNTLRREMREKGV 964 (1017)
Q Consensus 948 ~~~~a~~~~~~m~~~~~ 964 (1017)
..+.|.+++..|...+-
T Consensus 784 ~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 784 ELEEARRLFTELSKNGD 800 (1018)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 55666677776665544
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.88 E-value=4.1e-18 Score=188.14 Aligned_cols=671 Identities=14% Similarity=0.102 Sum_probs=401.9
Q ss_pred CCchhHHHHhccc--CCCCchhHHHHHHHHHcCCChhhHHHHHHHHHhCCCC--CChhhHHH-HHHHhhcCCChhHHHHH
Q 001763 104 GIANLAEKVFDRL--EDRDILAWNSILSMYSKRGSFENVFKSFGLLCNRGGV--PNGFTFAI-VLSACSKSMDVSYGRQL 178 (1017)
Q Consensus 104 g~~~~A~~~f~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~t~~~-ll~~~~~~~~~~~a~~~ 178 (1017)
..+.+|-.+..-+ .+.....|..+-..|.+.|..++.+.+++.-....-. .|..+... .+..++. .-...|...
T Consensus 22 ~~LPD~~ev~~IL~~e~a~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laa-y~s~~a~ke 100 (1018)
T KOG2002|consen 22 DQLPDATEVLSILKAEQAPLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAA-YYSQLAMKE 100 (1018)
T ss_pred hcCCChHHHHHHHHHhcCchhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3444555555544 2445668999999999999999998887765511100 01111000 0000000 000111111
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHcCCCchhHHHhhhcCCCCCcchHHHH---HHHHHHcCC--hhHHHHHHHHHHHcCC
Q 001763 179 HCHVIELGFESSSFCKGALIDMYAKLNNVSDARRVFDGAVDLDTVSWTSM---IAGYVQAGL--PEAAFELFEKMIKVGC 253 (1017)
Q Consensus 179 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~--~~~A~~~~~~m~~~g~ 253 (1017)
-..-.+ ...+..|..+|+.....+...+..+ -..|...|. ++.|...|....+..
T Consensus 101 k~~~~k-------------------~e~~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s- 160 (1018)
T KOG2002|consen 101 KKKDEK-------------------DELFDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS- 160 (1018)
T ss_pred Hhcchh-------------------HHHHHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhC-
Confidence 111110 0112334444443222111111111 122333333 478888888887764
Q ss_pred CCChhhHHHHHHHHhccCCHHHHHHHHHhcCC--CCccc--hHHHHHHHhccCCchHHHHHHHHHHhcCCCCChhh-HHH
Q 001763 254 VPDQVAFVTVINVCFNLGRLDEARELFAQMQN--PNVVA--WNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRST-LGS 328 (1017)
Q Consensus 254 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ 328 (1017)
++|.-.+.--.......+++..|+.+|..... |...+ .-.+..++.+.|+.+.|...|....+ +.|+... +..
T Consensus 161 p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralq--Ldp~~v~alv~ 238 (1018)
T KOG2002|consen 161 PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQ--LDPTCVSALVA 238 (1018)
T ss_pred CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHh--cChhhHHHHHH
Confidence 55555544444555677899999999988553 22222 22334566688999999999999888 6664322 221
Q ss_pred HHH---HHhcccchhHHHHHHHHHHHhCCCCchhhhHHHHHHHHccCChhHHHHHHhhcCCCC------cchHHHHHHHH
Q 001763 329 VLS---GISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFDSLDERN------AVLWNALLGGY 399 (1017)
Q Consensus 329 ll~---~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~ 399 (1017)
|-- .......+..|.+++......... |+.+.+.|.+.|.-.|+++.++.+...+.... ..+|.-+..+|
T Consensus 239 L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~-nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~ 317 (1018)
T KOG2002|consen 239 LGEVDLNFNDSDSYKKGVQLLQRAYKENNE-NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSY 317 (1018)
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 111 112233455666666666655433 77788888888888899988888887765432 23577788888
Q ss_pred HhCCChhHHHHHHHhhhhcCCCCChhcH--HHHHHhhhcccchHhhHHHHHHHHHhcCCchhhHHHHHHHHhhccC----
Q 001763 400 SQNCYAHEVVDLFFAMKSSGFHADDFTY--TSILSSCACLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSR---- 473 (1017)
Q Consensus 400 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---- 473 (1017)
...|++++|...|.+..+ ..||.+++ ..+...+...|+++.+...|+.+.+.. +.+..+...|...|...+
T Consensus 318 Ha~Gd~ekA~~yY~~s~k--~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~ 394 (1018)
T KOG2002|consen 318 HAQGDFEKAFKYYMESLK--ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQE 394 (1018)
T ss_pred HhhccHHHHHHHHHHHHc--cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhH
Confidence 888999999888877654 34555433 334455556666666666666665542 223333333344444332
Q ss_pred ChhHHHHHHhhcCCCC---cccchhhhHHhHhcCCHHHHHHHHHHhhccCCCCCcccHHHHHHHhhcccCCCcchhHHHH
Q 001763 474 ALEEARKQFERIQNQD---NVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCF 550 (1017)
Q Consensus 474 ~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~ 550 (1017)
..+.|..+..+..++. ..+|-.+...|.+ +++..++..|..... .
T Consensus 395 ~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d-------------------------------~ 442 (1018)
T KOG2002|consen 395 KRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ-TDPWASLDAYGNALD-------------------------------I 442 (1018)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHh-cChHHHHHHHHHHHH-------------------------------H
Confidence 3444444444444332 2233333333222 222222333333221 1
Q ss_pred HhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCCCCCchhHHHHHHHHhhCCchHHHHHHHHHH-HcCCCCChHHH
Q 001763 551 SVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNVEDAVVLYRGMQ-TEGLSPNDITF 629 (1017)
Q Consensus 551 ~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~A~~l~~~m~-~~g~~p~~~t~ 629 (1017)
+...+-.. .+.+.|.+...+...|++++|...|+..... +...|- +.|-.++ +|.
T Consensus 443 L~~~~~~i-p~E~LNNvaslhf~~g~~~~A~~~f~~A~~~----------------------~~~~~n~de~~~~~-lt~ 498 (1018)
T KOG2002|consen 443 LESKGKQI-PPEVLNNVASLHFRLGNIEKALEHFKSALGK----------------------LLEVANKDEGKSTN-LTL 498 (1018)
T ss_pred HHHcCCCC-CHHHHHhHHHHHHHhcChHHHHHHHHHHhhh----------------------hhhhcCccccccch-hHH
Confidence 11222222 6788888888888899998888888765421 000000 0011111 222
Q ss_pred HH-HHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCC--CCCceeehhhhhhccc
Q 001763 630 TS-LLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPN--PKSTVLWTAVISGHAQ 706 (1017)
Q Consensus 630 ~~-ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~ 706 (1017)
.- +.......++.+.|.+.+..+++.. |.....+..++-+-...+...+|...+..... ..++..|+-++..|..
T Consensus 499 ~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~ 576 (1018)
T KOG2002|consen 499 KYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLK 576 (1018)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHh
Confidence 22 2223344467777777777777765 45555555555555555677777777776654 4566777777777777
Q ss_pred CCCchHHHHHHHHHHHC-CCCcCHHhHHHHHHHHhc------------cCcHHHHHHHHHHHHHhCCCCCcchHhHHHhH
Q 001763 707 NDSNYEALHFYREMRSH-NVLPDQATFVSVLRACAV------------LSSLRDGGEIHSLIFHTGYDLDEITGSALIDM 773 (1017)
Q Consensus 707 ~g~~~~A~~~~~~m~~~-~~~pd~~t~~~ll~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 773 (1017)
...+..|-+-|+...+. ...+|..+..+|.+.|.. .+..++|.++|.++++..|. |....+.++-+
T Consensus 577 k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiV 655 (1018)
T KOG2002|consen 577 KSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIV 655 (1018)
T ss_pred hhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhh
Confidence 77777777766665443 224677777777776542 34678899999999998887 88999999999
Q ss_pred HHhcCCHHHHHHHHHhccCCC--hhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-ChHhHHHHHHHcccCCcHHHH
Q 001763 774 YAKCGDVKRSAQVFDEMAERN--YVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMP-DDVTFLGVLTACSHAGRVSEG 850 (1017)
Q Consensus 774 y~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a 850 (1017)
++.+|++++|..+|.++.+.. ...+|-.++.+|...|++..|+++|+..++.-..- +......|..++...|.+.+|
T Consensus 656 LA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ea 735 (1018)
T KOG2002|consen 656 LAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEA 735 (1018)
T ss_pred hhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHH
Confidence 999999999999999888622 22389999999999999999999999988864433 335678899999999999999
Q ss_pred HHHHHHhhhh
Q 001763 851 RQIFETMVSC 860 (1017)
Q Consensus 851 ~~~~~~m~~~ 860 (1017)
.+........
T Consensus 736 k~~ll~a~~~ 745 (1018)
T KOG2002|consen 736 KEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHh
Confidence 9999888773
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=3e-19 Score=210.35 Aligned_cols=250 Identities=14% Similarity=0.049 Sum_probs=200.7
Q ss_pred CCCchHHHHHHHHHHHCC-CCcC-HHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHH
Q 001763 707 NDSNYEALHFYREMRSHN-VLPD-QATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSA 784 (1017)
Q Consensus 707 ~g~~~~A~~~~~~m~~~~-~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~ 784 (1017)
.+++++|++.|++..+.+ ..|+ ...+..+...+...|++++|...++.+++..+. +...|..++.+|...|++++|+
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHH
Confidence 367888999999888764 2343 345666677778899999999999998887765 5668888999999999999999
Q ss_pred HHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhc
Q 001763 785 QVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCH 861 (1017)
Q Consensus 785 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 861 (1017)
..|+++.. ++....|..++..+...|++++|+..|++.++ ..|+. ..+..+..++.+.|++++|+..|+..++
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~-- 461 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK-- 461 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence 99987765 34344888899999999999999999999998 56765 5677788888999999999999999887
Q ss_pred CCCc-CchhHHHHHHhhhccCCHHHHHHHHHhC-CCCCCH-HH------HHHHHHH-HHhcCCchHHHHHHHHHHhhCCC
Q 001763 862 GIQP-RVDHCACMVDLLGRWGFLKEAEEFIEQL-TFEPDS-RI------WTTLLGA-CGVHRDDIRGRLAAKKLIELEPE 931 (1017)
Q Consensus 862 ~~~p-~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~~-~~------~~~ll~~-~~~~g~~~~a~~~~~~~l~~~p~ 931 (1017)
..| +...+..+..+|...|++++|++.+++. .+.|+. .+ +...+.. +...|++++|+..++++++++|+
T Consensus 462 -~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 462 -NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred -hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 344 4667888899999999999999998874 444431 11 1112222 33469999999999999999999
Q ss_pred CCchHHHHHHHHHhcCCcHHHHHHHHHHHHc
Q 001763 932 NPSPYVQLSNIYAALGNWNEVNTLRREMREK 962 (1017)
Q Consensus 932 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 962 (1017)
+..++..++++|...|++++|.+.+++..+.
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888764
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=1.5e-19 Score=202.52 Aligned_cols=301 Identities=13% Similarity=0.099 Sum_probs=228.4
Q ss_pred HHHHHhcCChHHHHHHHhhCCC--CCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcC---HHhHHHHHHHHhccC
Q 001763 669 LSMYMNSKRNTDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPD---QATFVSVLRACAVLS 743 (1017)
Q Consensus 669 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd---~~t~~~ll~~~~~~~ 743 (1017)
+..+...|++++|...|+++.. |.+..+|..++..+...|++++|+.+++.+...+..++ ..++..+...+...|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 4445666777777777776654 44555667777777777777777777777776432222 234667777788888
Q ss_pred cHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCCh-------hHHHHHHHHHHHhCCCHHHHH
Q 001763 744 SLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNY-------VISWNSMIVGFAKNGYAEDAL 816 (1017)
Q Consensus 744 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~ 816 (1017)
++++|..+++.+.+..+. +..++..++.+|.+.|++++|++.++.+.+.+. ...|..++..+...|++++|+
T Consensus 122 ~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDF-AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCCcc-hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 888888888888766443 667788888888888999999888888765221 113556777888899999999
Q ss_pred HHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcC--chhHHHHHHhhhccCCHHHHHHHHHhC
Q 001763 817 KVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPR--VDHCACMVDLLGRWGFLKEAEEFIEQL 893 (1017)
Q Consensus 817 ~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~l~~~g~~~eA~~~~~~~ 893 (1017)
..|+++++. .|+. ..+..++..+.+.|++++|.++|+++.+ ..|+ ...+..++.+|.+.|++++|.+.++++
T Consensus 201 ~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 201 ALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEE---QDPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999884 4654 5677788889999999999999999886 2343 356778889999999999999999886
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHh---cCCcHHHHHHHHHHHHcCCccCCc
Q 001763 894 -TFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAA---LGNWNEVNTLRREMREKGVKKFPG 969 (1017)
Q Consensus 894 -~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~---~g~~~~a~~~~~~m~~~~~~~~~g 969 (1017)
...|+...+..++..+..+|+++.|...++++++.+|++.... .+...+.. .|+.+++..++++|.+++++..|.
T Consensus 276 ~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~-~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 276 LEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFH-RLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHH-HHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 4577777777788889999999999999999999999877544 44444443 569999999999999999999998
Q ss_pred eeEEEEC
Q 001763 970 CSWIVLG 976 (1017)
Q Consensus 970 ~s~i~~~ 976 (1017)
+....-+
T Consensus 355 ~~c~~cg 361 (389)
T PRK11788 355 YRCRNCG 361 (389)
T ss_pred EECCCCC
Confidence 5544333
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=9.3e-18 Score=196.42 Aligned_cols=352 Identities=10% Similarity=0.042 Sum_probs=275.4
Q ss_pred HHcCCHHHHHHHHhcCCCC------CchhHHHHHHHHhhCCch-HHHHHHHHHHHcCCCCChHHHHHHHHhccCCCccch
Q 001763 572 VKCGFIGAAHKVLSCMPQR------NVVSMNALIAGYAQNNVE-DAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHL 644 (1017)
Q Consensus 572 ~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~-~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 644 (1017)
.+..+|+.-.-.|...+++ +..-...++..+.+.|.. +|+.+++........+.. .+..+..++...|+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHHH
Confidence 3455565555555555431 122233445566677777 999999988886443333 34444455667899999
Q ss_pred hhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCC--CCCceeehhhhhhcccCCCchHHHHHHHHHHH
Q 001763 645 GTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYEALHFYREMRS 722 (1017)
Q Consensus 645 a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 722 (1017)
|.+.++.+++.. |.+..++..++.++.+.|++++|...+++... |.+...|..++..+.+.|++++|+..++++..
T Consensus 95 A~~~l~~~l~~~--P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 95 VLQVVNKLLAVN--VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 999999999887 78899999999999999999999999998766 67778899999999999999999999998876
Q ss_pred CCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHH
Q 001763 723 HNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWN 800 (1017)
Q Consensus 723 ~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~ 800 (1017)
.. |+.......+..+...|++++|...++.+++..+.++......++..+.+.|++++|+..++++.. ++....+.
T Consensus 173 ~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~ 250 (656)
T PRK15174 173 EV--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRR 250 (656)
T ss_pred hC--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 53 333222222334778899999999999988776544555566677889999999999999998875 44445888
Q ss_pred HHHHHHHhCCCHHH----HHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcC-chhHHHHH
Q 001763 801 SMIVGFAKNGYAED----ALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPR-VDHCACMV 874 (1017)
Q Consensus 801 ~l~~~~~~~g~~~~----A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~ 874 (1017)
.+...|...|++++ |+..|+++++ ..|+. ..+..+..++...|++++|+..+++..+ ..|+ ...+..+.
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La 325 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 99999999999986 8999999998 56776 5788899999999999999999999987 4555 45677788
Q ss_pred HhhhccCCHHHHHHHHHhCC-CCCCHHHHHH-HHHHHHhcCCchHHHHHHHHHHhhCCCCC
Q 001763 875 DLLGRWGFLKEAEEFIEQLT-FEPDSRIWTT-LLGACGVHRDDIRGRLAAKKLIELEPENP 933 (1017)
Q Consensus 875 ~~l~~~g~~~eA~~~~~~~~-~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~l~~~p~~~ 933 (1017)
.+|.+.|++++|++.++++. ..|+...+.. ++.++...|+.++|+..++++++.+|++.
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 99999999999999998863 6676554444 45678889999999999999999999765
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.82 E-value=9.9e-18 Score=196.20 Aligned_cols=327 Identities=10% Similarity=-0.024 Sum_probs=276.6
Q ss_pred HHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCC--CCCceeehhhhhhcc
Q 001763 628 TFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPN--PKSTVLWTAVISGHA 705 (1017)
Q Consensus 628 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~ 705 (1017)
...-++..+.+.|+++.|..++..++... |.+......++......|++++|...|+++.. |.+...|..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 34456667788899999999999999887 67888888888888999999999999999876 777888999999999
Q ss_pred cCCCchHHHHHHHHHHHCCCCcC-HHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHH
Q 001763 706 QNDSNYEALHFYREMRSHNVLPD-QATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSA 784 (1017)
Q Consensus 706 ~~g~~~~A~~~~~~m~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~ 784 (1017)
+.|++++|+..|++..+. .|+ ...+..+..++...|++++|...+..+....+. +...+..+. .+.+.|++++|+
T Consensus 122 ~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~~-~l~~~g~~~eA~ 197 (656)
T PRK15174 122 KSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATCL-SFLNKSRLPEDH 197 (656)
T ss_pred HcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHHH-HHHHcCCHHHHH
Confidence 999999999999999885 555 566778888999999999999999988887775 334444443 478899999999
Q ss_pred HHHHhccCCC---hhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHH----HHHHHHH
Q 001763 785 QVFDEMAERN---YVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSE----GRQIFET 856 (1017)
Q Consensus 785 ~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~----a~~~~~~ 856 (1017)
..++.+...+ ....+..++..+...|++++|+..++++++. .|+. ..+..+..++...|++++ |+..|++
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 9999876632 2224455677889999999999999999984 5765 677889999999999986 8999999
Q ss_pred hhhhcCCCcC-chhHHHHHHhhhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCC
Q 001763 857 MVSCHGIQPR-VDHCACMVDLLGRWGFLKEAEEFIEQL-TFEPD-SRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENP 933 (1017)
Q Consensus 857 m~~~~~~~p~-~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~ 933 (1017)
+.+ +.|+ ...+..++.+|.+.|++++|+..+++. ...|+ +.++..++.++...|+++.|+..++++++.+|+++
T Consensus 276 Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~ 352 (656)
T PRK15174 276 ALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTS 352 (656)
T ss_pred HHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccch
Confidence 987 4565 567889999999999999999999886 45665 55788888899999999999999999999999998
Q ss_pred chHHHHHHHHHhcCCcHHHHHHHHHHHHcCCc
Q 001763 934 SPYVQLSNIYAALGNWNEVNTLRREMREKGVK 965 (1017)
Q Consensus 934 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 965 (1017)
..+..++.+|...|++++|.+.+++..+...+
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 88888899999999999999999988776554
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=5.1e-17 Score=191.49 Aligned_cols=271 Identities=12% Similarity=0.094 Sum_probs=200.9
Q ss_pred CChHHHHHHHhhCCC-----CCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcC-HHhHHHHHHHHhccCcHHHHH
Q 001763 676 KRNTDARLLFTEFPN-----PKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPD-QATFVSVLRACAVLSSLRDGG 749 (1017)
Q Consensus 676 g~~~~A~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~ 749 (1017)
+++++|.+.|+.... |.....|+.++..+...|++++|+..|++.++. .|+ ..+|..+...+...|++++|.
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 445555555554432 233445666667777777777777777777764 454 456777777888888888888
Q ss_pred HHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 001763 750 EIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQA 827 (1017)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 827 (1017)
..++.+++..+. +..++..++.+|...|++++|+..|++... |+....|..++..+.+.|++++|+..|++.++ .
T Consensus 386 ~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~ 462 (615)
T TIGR00990 386 EDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--N 462 (615)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--h
Confidence 888888887765 678889999999999999999999998865 44445788889999999999999999999988 4
Q ss_pred CCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCch--h------HHHHHHhhhccCCHHHHHHHHHhC-CCCC
Q 001763 828 MPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVD--H------CACMVDLLGRWGFLKEAEEFIEQL-TFEP 897 (1017)
Q Consensus 828 ~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~--~------~~~l~~~l~~~g~~~eA~~~~~~~-~~~p 897 (1017)
.|+. ..+..+..++...|++++|++.|++.++ +.|+.. + ++.....+...|++++|++++++. ...|
T Consensus 463 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p 539 (615)
T TIGR00990 463 FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP 539 (615)
T ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 5765 6788888889999999999999999877 444321 1 112223344579999999999884 5667
Q ss_pred CHH-HHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHc
Q 001763 898 DSR-IWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREK 962 (1017)
Q Consensus 898 ~~~-~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 962 (1017)
+.. .|..++..+...|++++|+..+++++++.+.....+ ....|.+|.++...+++.
T Consensus 540 ~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~--------~a~~~~~a~~~~~~~~~~ 597 (615)
T TIGR00990 540 ECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV--------QAISYAEATRTQIQVQED 597 (615)
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 554 688888999999999999999999999987644322 223555666666555543
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.80 E-value=1.3e-16 Score=191.16 Aligned_cols=374 Identities=10% Similarity=0.001 Sum_probs=229.2
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHhcCCC---CCchhHHHHHHHHhhCCch-HHHHHHHHHHHcCCCCChHHHHHHHHh
Q 001763 560 NIYVGSSLIDMYVKCGFIGAAHKVLSCMPQ---RNVVSMNALIAGYAQNNVE-DAVVLYRGMQTEGLSPNDITFTSLLDA 635 (1017)
Q Consensus 560 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~-~A~~l~~~m~~~g~~p~~~t~~~ll~a 635 (1017)
....+..+...+.+.|++++|.+++++... .+...+..+...+...|.. +|+..+++..+. .|+...+..+..+
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~ 125 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALAYV 125 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 555677777777888888888877777532 2334455555666666666 777777777664 3333225555556
Q ss_pred ccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCCceeehhhhhhcccCCCchHHHH
Q 001763 636 CDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPNPKSTVLWTAVISGHAQNDSNYEALH 715 (1017)
Q Consensus 636 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 715 (1017)
+...|+.++|...+..+++.. |.+..++..++.++.+.|..++|.+.++.....|+. . ..++
T Consensus 126 l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~---~-------------~~l~ 187 (765)
T PRK10049 126 YKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAE---K-------------RDLE 187 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHH---H-------------HHHH
Confidence 666677777777777777665 566666666777777777777777777665541110 0 0000
Q ss_pred HHHHHHHCCCCcCHHhH-HHHHHHHhccCcH---HHHHHHHHHHHHhC-CCCCcc--hHhH---HHhHHHhcCCHHHHHH
Q 001763 716 FYREMRSHNVLPDQATF-VSVLRACAVLSSL---RDGGEIHSLIFHTG-YDLDEI--TGSA---LIDMYAKCGDVKRSAQ 785 (1017)
Q Consensus 716 ~~~~m~~~~~~pd~~t~-~~ll~~~~~~~~~---~~a~~~~~~~~~~~-~~~~~~--~~~~---l~~~y~~~g~~~~A~~ 785 (1017)
. .|..... ..+.......+.+ ++|...++.+++.- ..|+.. .... .+-++...|++++|+.
T Consensus 188 ~---------~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~ 258 (765)
T PRK10049 188 A---------DAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVIS 258 (765)
T ss_pred H---------HHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 0 0000000 0000001111222 44555555554331 111111 1111 1123345577777777
Q ss_pred HHHhccCCC---hhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-----HhHHHHHHHcccCCcHHHHHHHHHHh
Q 001763 786 VFDEMAERN---YVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-----VTFLGVLTACSHAGRVSEGRQIFETM 857 (1017)
Q Consensus 786 ~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~m 857 (1017)
.|+++.+.+ +...-..+...|...|++++|+..|+++++. .|.. .....+..++...|++++|.++++.+
T Consensus 259 ~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~ 336 (765)
T PRK10049 259 EYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESENYPGALTVTAHT 336 (765)
T ss_pred HHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 777776532 1111122466777778888888888777663 2322 23455566677778888888887777
Q ss_pred hhhcC----------CCcCc---hhHHHHHHhhhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHH
Q 001763 858 VSCHG----------IQPRV---DHCACMVDLLGRWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAA 922 (1017)
Q Consensus 858 ~~~~~----------~~p~~---~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 922 (1017)
.+... -.|+. ..+..++.++...|++++|++.++++ ...| +...|..++..+...|+.+.|+..+
T Consensus 337 ~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l 416 (765)
T PRK10049 337 INNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENEL 416 (765)
T ss_pred hhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 66211 01221 23456677888889999999998886 3445 4558888888888899999999999
Q ss_pred HHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCC
Q 001763 923 KKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGV 964 (1017)
Q Consensus 923 ~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 964 (1017)
+++++++|+++..++.++.++...|+|++|+++.+.+.+...
T Consensus 417 ~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 417 KKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999998888876543
No 23
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.80 E-value=1.3e-17 Score=186.68 Aligned_cols=282 Identities=11% Similarity=0.063 Sum_probs=221.7
Q ss_pred CCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCC------ceeehhhhhhcccCCCch
Q 001763 638 GPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPNPKS------TVLWTAVISGHAQNDSNY 711 (1017)
Q Consensus 638 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~ 711 (1017)
..|++++|...+..+++.+ |.+..++..++..|.+.|++++|...++.+...++ ...|..++..|.+.|+++
T Consensus 47 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred hcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 4456666666666666654 56677788888888888888888888887665221 135677888888889999
Q ss_pred HHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCc----chHhHHHhHHHhcCCHHHHHHHH
Q 001763 712 EALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDE----ITGSALIDMYAKCGDVKRSAQVF 787 (1017)
Q Consensus 712 ~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~y~~~g~~~~A~~~~ 787 (1017)
+|+.+|+++.+.. .++..++..++..+...|++++|.+.++.+.+.++.+.. ..+..++..|.+.|++++|.+.|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999988752 345677888888999999999999999988877655322 24567888899999999999999
Q ss_pred HhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh--HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCC
Q 001763 788 DEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD--VTFLGVLTACSHAGRVSEGRQIFETMVSCHGI 863 (1017)
Q Consensus 788 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 863 (1017)
+++.+ ++....+..++..|.+.|++++|+++|+++.+. .|+. .++..++.+|...|++++|.+.++++.+ .
T Consensus 204 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~---~ 278 (389)
T PRK11788 204 KKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ--DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE---E 278 (389)
T ss_pred HHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---h
Confidence 98875 444447888999999999999999999999984 4543 5678888999999999999999999987 4
Q ss_pred CcCchhHHHHHHhhhccCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHh
Q 001763 864 QPRVDHCACMVDLLGRWGFLKEAEEFIEQL-TFEPDSRIWTTLLGACGV---HRDDIRGRLAAKKLIE 927 (1017)
Q Consensus 864 ~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~l~ 927 (1017)
.|+...+..++.+|.+.|++++|.++++++ ...|+...+..++..+.. +|+.+.+...+++.++
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 677777788899999999999999999875 567998888888866443 4577777777776664
No 24
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.77 E-value=7.1e-15 Score=160.59 Aligned_cols=530 Identities=12% Similarity=0.022 Sum_probs=274.5
Q ss_pred CCCchhHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhcCCCCcchHHHH
Q 001763 118 DRDILAWNSILSMYSKRGSFENVFKSFGLLCNRGGVPNGFTFAIVLSACSKSMDVSYGRQLHCHVIELGFESSSFCKGAL 197 (1017)
Q Consensus 118 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 197 (1017)
.||.+||.++|..||..|+.+.|- +|.-|.-...+.+...|+.++.+....++.+.+. .|...+|+.|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L 89 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL 89 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence 456677777777777777777776 7777776666667777777777776666666555 5666777777
Q ss_pred HHHHHcCCCchh---HHHhhhcCCC---C----Ccch---------------HHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 001763 198 IDMYAKLNNVSD---ARRVFDGAVD---L----DTVS---------------WTSMIAGYVQAGLPEAAFELFEKMIKVG 252 (1017)
Q Consensus 198 i~~~~~~g~~~~---A~~~f~~~~~---~----~~~~---------------~~~li~~~~~~g~~~~A~~~~~~m~~~g 252 (1017)
...|...|++.. .++.++.+.. + ..+- -...|.-..-.|.++.+++++..|....
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa 169 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSA 169 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 777777777644 1111111000 0 0000 0112222233344444444443332111
Q ss_pred -CCCChhhHHHHHHHHhc-cCCHHHHHHHHHhcCC-CCccchHHHHHHHhccCCchHHHHHHHHHHhcCCCCChhhHHHH
Q 001763 253 -CVPDQVAFVTVINVCFN-LGRLDEARELFAQMQN-PNVVAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSV 329 (1017)
Q Consensus 253 -~~p~~~t~~~li~~~~~-~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 329 (1017)
..|..+ +++-+.. ...+++-........+ ++..+|.+++..-..+|+.+.|..++.+|++.|+..+..-|..+
T Consensus 170 ~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpL 245 (1088)
T KOG4318|consen 170 WNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPL 245 (1088)
T ss_pred ccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhh
Confidence 001111 1222211 1223333333333333 78888999999999999999999999999999999999988888
Q ss_pred HHHHhcccchhHHHHHHHHHHHhCCCCchhhhHHHHHHHHccCChhHHHHHHhhcCCCCcchHHHHHHHHHhCCChh---
Q 001763 330 LSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFDSLDERNAVLWNALLGGYSQNCYAH--- 406 (1017)
Q Consensus 330 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~--- 406 (1017)
+-+ .++...+..+++-|...|+.|+..|+.--+-...+.|....+.+..+.-.--....+..+..+...+.+.+
T Consensus 246 l~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl 322 (1088)
T KOG4318|consen 246 LLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNL 322 (1088)
T ss_pred hhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHH
Confidence 877 77788888888999999999999988876666655554322222111100001112222222211111111
Q ss_pred --HHHHHHHhhhhcCCCCChhcHHHHHHhhhcccchHhhHHHHHHHHHhcCCc---hhhHHHHHHHHhhccCChhHHHHH
Q 001763 407 --EVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLAT---NLYVGNALVDMYAKSRALEEARKQ 481 (1017)
Q Consensus 407 --~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~ 481 (1017)
-.+..+.+..-.|+......|....... .+|.-+...++...+..-.... ++..+..+ +++.
T Consensus 323 ~~~v~~s~k~~fLlg~d~~~aiws~c~~l~-hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~------------lrqy 389 (1088)
T KOG4318|consen 323 RKSVIGSTKKLFLLGTDILEAIWSMCEKLR-HQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGAL------------LRQY 389 (1088)
T ss_pred HHHHHHHhhHHHHhccccchHHHHHHHHHH-HcCCCchHHHHHhhhcCCccccCcchHHHHHHH------------HHHH
Confidence 1111222222223332222222222211 1344444444444443211110 11112222 2233
Q ss_pred HhhcCCCCcc-cch--------------hhhHHhHhcCCHHHHHHHHHHhhccC----CC-------CCcccHHHHHHHh
Q 001763 482 FERIQNQDNV-SWN--------------AIIVGYVQEGDVFEAFNMFRRMNLVG----IV-------PDDVSSASILSAC 535 (1017)
Q Consensus 482 f~~~~~~~~~-~~~--------------~li~~~~~~g~~~~A~~~~~~m~~~g----~~-------pd~~t~~~ll~a~ 535 (1017)
|.+...+... .++ ..+.-+..+-+...+++-+..+.... .. |-...-..++-+|
T Consensus 390 Frr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l 469 (1088)
T KOG4318|consen 390 FRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTL 469 (1088)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHH
Confidence 3333222111 111 00000111111111111111111000 00 1111223344444
Q ss_pred hcccCCCcchhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCCCCCch------hHHHHHHHHhhCCch-
Q 001763 536 ANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVV------SMNALIAGYAQNNVE- 608 (1017)
Q Consensus 536 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~------~~~~li~~~~~~~~~- 608 (1017)
.+..+..++....+.....- -...|..||+.......+++|..+.++...+|.. -+..+.....+.+.-
T Consensus 470 ~se~n~lK~l~~~ekye~~l----f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~ 545 (1088)
T KOG4318|consen 470 NSEYNKLKILCDEEKYEDLL----FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILY 545 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHH----hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHH
Confidence 44444333333222221111 2357889999999999999999999998876543 466667777777776
Q ss_pred HHHHHHHHHHHcCCCCC--hHHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHh
Q 001763 609 DAVVLYRGMQTEGLSPN--DITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFT 686 (1017)
Q Consensus 609 ~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 686 (1017)
++..++.+|.+.-..-+ ..++-.++......|+.+.-++.++.+...|+.. . .-++....+.++...|+++++
T Consensus 546 dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-t----gPl~~vhLrkdd~s~a~ea~e 620 (1088)
T KOG4318|consen 546 DLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-T----GPLWMVHLRKDDQSAAQEAPE 620 (1088)
T ss_pred HHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-c----ccceEEEeeccchhhhhhcch
Confidence 89999999987533333 3566667777788888888888888888887651 1 233444555666666665554
Q ss_pred hC
Q 001763 687 EF 688 (1017)
Q Consensus 687 ~~ 688 (1017)
..
T Consensus 621 ~~ 622 (1088)
T KOG4318|consen 621 PE 622 (1088)
T ss_pred HH
Confidence 43
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.77 E-value=4.6e-15 Score=173.45 Aligned_cols=432 Identities=13% Similarity=0.079 Sum_probs=257.5
Q ss_pred cccchHhhHHHHHHHHHhcCCchhhHHHHHHHHhhccCChhHHHHHHhhcCCCCcccchhh---hHHhHhcCCHHHHHHH
Q 001763 436 CLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQNQDNVSWNAI---IVGYVQEGDVFEAFNM 512 (1017)
Q Consensus 436 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~ 512 (1017)
+.|+++.|...+.++.+........++ .++..+...|+.++|+..+++...++...+..+ ...|...|++++|+++
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiel 124 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALAL 124 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344444444444444443322212233 566667777888888888888886655544433 3467777999999999
Q ss_pred HHHhhccCCCCCcccHHHHHHHhhcccCCCcchhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCCCCCc
Q 001763 513 FRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNV 592 (1017)
Q Consensus 513 ~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~ 592 (1017)
|+++.+. .|+ ++.++..++..|...++.++|++.++++...++
T Consensus 125 y~kaL~~--dP~-----------------------------------n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp 167 (822)
T PRK14574 125 WQSSLKK--DPT-----------------------------------NPDLISGMIMTQADAGRGGVVLKQATELAERDP 167 (822)
T ss_pred HHHHHhh--CCC-----------------------------------CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc
Confidence 9998874 444 677777888999999999999999999876444
Q ss_pred hhHHHHHHHHhh--CCch-HHHHHHHHHHHcCCCCChHHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHH
Q 001763 593 VSMNALIAGYAQ--NNVE-DAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALL 669 (1017)
Q Consensus 593 ~~~~~li~~~~~--~~~~-~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~ 669 (1017)
.....+..+|.. .+.. +|++.++++.+.. |.+..++..+.
T Consensus 168 ~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-------------------------------------P~n~e~~~~~~ 210 (822)
T PRK14574 168 TVQNYMTLSYLNRATDRNYDALQASSEAVRLA-------------------------------------PTSEEVLKNHL 210 (822)
T ss_pred chHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-------------------------------------CCCHHHHHHHH
Confidence 333234444444 2222 6777777776642 56666666777
Q ss_pred HHHHhcCChHHHHHHHhhCCCCCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccC---cHH
Q 001763 670 SMYMNSKRNTDARLLFTEFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLS---SLR 746 (1017)
Q Consensus 670 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~---~~~ 746 (1017)
....+.|-...|.++.++-+.--+...+.- =+.+.|.+..+-. ..|.. .... -.+
T Consensus 211 ~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~--------l~~~~~a~~vr~a----~~~~~----------~~~~r~~~~d 268 (822)
T PRK14574 211 EILQRNRIVEPALRLAKENPNLVSAEHYRQ--------LERDAAAEQVRMA----VLPTR----------SETERFDIAD 268 (822)
T ss_pred HHHHHcCCcHHHHHHHHhCccccCHHHHHH--------HHHHHHHHHHhhc----ccccc----------cchhhHHHHH
Confidence 777777777777777666553000000000 0011111111111 00100 0001 122
Q ss_pred HHHHHHHHHHHh---CCCCCcchHh---HHHhHHHhcCCHHHHHHHHHhccCCCh-hHHH--HHHHHHHHhCCCHHHHHH
Q 001763 747 DGGEIHSLIFHT---GYDLDEITGS---ALIDMYAKCGDVKRSAQVFDEMAERNY-VISW--NSMIVGFAKNGYAEDALK 817 (1017)
Q Consensus 747 ~a~~~~~~~~~~---~~~~~~~~~~---~l~~~y~~~g~~~~A~~~~~~~~~~~~-~~~~--~~l~~~~~~~g~~~~A~~ 817 (1017)
.|..-++.++.. .++..+.... -.+-++.+.|++.++++.++.++..+. ++.| ..++.+|...++.++|+.
T Consensus 269 ~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~ 348 (822)
T PRK14574 269 KALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAP 348 (822)
T ss_pred HHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 233333333321 1111111112 233455667778888888887775432 1233 456777777888888888
Q ss_pred HHHHHHHCC----CCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcC----------CCcCc---hhHHHHHHhhhc
Q 001763 818 VFHEMKETQ----AMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHG----------IQPRV---DHCACMVDLLGR 879 (1017)
Q Consensus 818 ~~~~m~~~g----~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~----------~~p~~---~~~~~l~~~l~~ 879 (1017)
+|+++.... ..|+. .....|..+|..++++++|..+.+.+.+.-. -.|++ +.+..++..+.-
T Consensus 349 l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~ 428 (822)
T PRK14574 349 ILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA 428 (822)
T ss_pred HHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 888776632 11222 2345677777788888888888887765211 01222 223445666777
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHH
Q 001763 880 WGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRR 957 (1017)
Q Consensus 880 ~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 957 (1017)
.|++.+|++.++++ ...| |..++..+...++..|...+|+..++.+..++|++....+.++.++...|+|.+|.++.+
T Consensus 429 ~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~ 508 (822)
T PRK14574 429 LNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTD 508 (822)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 88888888888776 2344 556777777778888888888888888888888888888888888888888888877776
Q ss_pred HHHHcCC
Q 001763 958 EMREKGV 964 (1017)
Q Consensus 958 ~m~~~~~ 964 (1017)
.+.+...
T Consensus 509 ~l~~~~P 515 (822)
T PRK14574 509 DVISRSP 515 (822)
T ss_pred HHHhhCC
Confidence 6655433
No 26
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.76 E-value=2.4e-13 Score=143.76 Aligned_cols=491 Identities=11% Similarity=0.061 Sum_probs=335.1
Q ss_pred cccchHhhHHHHHHHHHhcCCchhhHHHHHHHHhhccCChhHHHHHHhhcCC---CCcccchhhhHHhHhcCCHHHHHHH
Q 001763 436 CLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQN---QDNVSWNAIIVGYVQEGDVFEAFNM 512 (1017)
Q Consensus 436 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 512 (1017)
...+.+.|+.++...++.- +.+.. |.-+|++..-++.|.++++...+ .+...|-+-...--.+|+.+....+
T Consensus 388 elE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred hccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 3344444555555554431 11222 33344555666777777766553 3566676666666667777777776
Q ss_pred HHH----hhccCCCCCcccHHHHHHHhhcccCCCcchhHHHHHhhhCCCCCc-hHHHHHHHHHHHHcCCHHHHHHHHhcC
Q 001763 513 FRR----MNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSN-IYVGSSLIDMYVKCGFIGAAHKVLSCM 587 (1017)
Q Consensus 513 ~~~----m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~l~~~y~~~g~~~~A~~~~~~~ 587 (1017)
.++ +...|+..+..-|..=..+|...|..-.++.|...++.-|++..+ -.+++.-.+.+.+.+.++-|+.+|...
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 654 455688888888888888899899888888888888888877533 346777888888999999999888876
Q ss_pred CC---CCchhHHHHHHHHhhCCch-HHHHHHHHHHHcCCCCChHHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchH
Q 001763 588 PQ---RNVVSMNALIAGYAQNNVE-DAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDF 663 (1017)
Q Consensus 588 ~~---~~~~~~~~li~~~~~~~~~-~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 663 (1017)
.+ .+...|...+..--.+|.. +-..+|++.... ++-...-|.......-..|++..|+.++..+.+.. |.+..
T Consensus 543 lqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~--pnsee 619 (913)
T KOG0495|consen 543 LQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN--PNSEE 619 (913)
T ss_pred HhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC--CCcHH
Confidence 64 2334555544443344544 555566666554 22222333333333334455555555555544444 34444
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCCCCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccC
Q 001763 664 LHIALLSMYMNSKRNTDARLLFTEFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLS 743 (1017)
Q Consensus 664 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~ 743 (1017)
.|-+-+.....+.++++|-.+|.+... ..|+...|.--+..-..++
T Consensus 620 --------------------------------iwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld 665 (913)
T KOG0495|consen 620 --------------------------------IWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLD 665 (913)
T ss_pred --------------------------------HHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhh
Confidence 444444444455555555555555544 2455555555555555677
Q ss_pred cHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHH
Q 001763 744 SLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHE 821 (1017)
Q Consensus 744 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 821 (1017)
+.++|.++++..++.-+. -...|-.++..+...++++.|.+.|..-.+ |+..+.|-.+...--+.|+.-+|..++++
T Consensus 666 ~~eeA~rllEe~lk~fp~-f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildr 744 (913)
T KOG0495|consen 666 NVEEALRLLEEALKSFPD-FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDR 744 (913)
T ss_pred hHHHHHHHHHHHHHhCCc-hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHH
Confidence 788888888777776554 456777888888888888888888876554 66666888888888888888888888888
Q ss_pred HHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhCCCCCCHH
Q 001763 822 MKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQLTFEPDSR 900 (1017)
Q Consensus 822 m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~~~~p~~~ 900 (1017)
.+-. +|+. ..|...+.+=.+.|+.++|.....+.+++ .+-+-.-|.--|.+..+.++-..+.+.+++.. .|+.
T Consensus 745 arlk--NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dph 818 (913)
T KOG0495|consen 745 ARLK--NPKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPH 818 (913)
T ss_pred HHhc--CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCch
Confidence 8774 4654 67788888888889999998888888773 34455667777888888888778777777754 4555
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCCccCCceeEEEECC
Q 001763 901 IWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVKKFPGCSWIVLGQ 977 (1017)
Q Consensus 901 ~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~g~s~i~~~~ 977 (1017)
+..+....++....++.|..-|+++++.+|++..++..+-..+...|.-++-.+++++-... ++.-|..|+-++.
T Consensus 819 Vllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avSK 893 (913)
T KOG0495|consen 819 VLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVSK 893 (913)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHhh
Confidence 66667777888889999999999999999999999999999999999999988888766543 3346888887765
No 27
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.76 E-value=1.4e-13 Score=151.93 Aligned_cols=632 Identities=13% Similarity=0.129 Sum_probs=345.7
Q ss_pred CCchhHHHhhhcCCCC---CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHH
Q 001763 205 NNVSDARRVFDGAVDL---DTVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEARELFA 281 (1017)
Q Consensus 205 g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 281 (1017)
|++++|.+++.++++. +...|-+|...|-+.|+.+++...+-...... +-|..-|..+.....+.|+++.|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 8888888888877663 45578888888888888888877665544443 4456778888888888888888888888
Q ss_pred hcCCC---CccchHHHHHHHhccCCchHHHHHHHHHHhcCCCCChhhHHHHHHHHhcccchhHHHHHHHHHHHhCCCCch
Q 001763 282 QMQNP---NVVAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNV 358 (1017)
Q Consensus 282 ~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 358 (1017)
+..+. +...+---...|-+.|+...|...|.++.+.....|..-+..++.
T Consensus 232 rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~--------------------------- 284 (895)
T KOG2076|consen 232 RAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIR--------------------------- 284 (895)
T ss_pred HHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHH---------------------------
Confidence 77752 323333445567777888888888888776422111111111111
Q ss_pred hhhHHHHHHHHccCChhHHHHHHhhcCC--C---CcchHHHHHHHHHhCCChhHHHHHHHhhhhcCCCCC----------
Q 001763 359 YVASSLINMYAKCEKMESAKKVFDSLDE--R---NAVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHAD---------- 423 (1017)
Q Consensus 359 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---------- 423 (1017)
..++.|...++-+.|.+.++.... . +...++.++..|.+...++.+......+......+|
T Consensus 285 ----~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~ 360 (895)
T KOG2076|consen 285 ----RVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERR 360 (895)
T ss_pred ----HHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhc
Confidence 122333334444445444444332 1 223455555555555555555555555443111111
Q ss_pred ------------hhcH----HHHHHhhhcccchHhhHHHHHHHHHhc--CCchhhHHHHHHHHhhccCChhHHHHHHhhc
Q 001763 424 ------------DFTY----TSILSSCACLEYLEMGRQLHAVIIKNK--LATNLYVGNALVDMYAKSRALEEARKQFERI 485 (1017)
Q Consensus 424 ------------~~t~----~~ll~a~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~ 485 (1017)
...| ..+.-+.......+....+.....+.. +.-+...+.-+.++|...|++.+|..+|..+
T Consensus 361 ~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i 440 (895)
T KOG2076|consen 361 REEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPI 440 (895)
T ss_pred cccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 1111 122223344455555555555555555 3445667777888888888888888888887
Q ss_pred CC----CCcccchhhhHHhHhcCCHHHHHHHHHHhhccCCCCCcccHHHHHHHhhcccCCCcchhHHHHHhhhCCCCCch
Q 001763 486 QN----QDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSNI 561 (1017)
Q Consensus 486 ~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~ 561 (1017)
.. .+...|--+...|...|.+++|++.|...+. ..|+ +.
T Consensus 441 ~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~--~~p~-----------------------------------~~ 483 (895)
T KOG2076|consen 441 TNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLI--LAPD-----------------------------------NL 483 (895)
T ss_pred hcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh--cCCC-----------------------------------ch
Confidence 64 3456788888888888888888888888776 3454 77
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCCCCCchhHHHHHHHHhhCCchHHHHHHHHHHHcCCCCChHHHHHHHHhccCCCc
Q 001763 562 YVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNVEDAVVLYRGMQTEGLSPNDITFTSLLDACDGPYK 641 (1017)
Q Consensus 562 ~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 641 (1017)
.+.-.|...|.+.|+.++|.+.+..+..+|...- ...+..|+........+.+...|+
T Consensus 484 D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~----------------------e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 484 DARITLASLYQQLGNHEKALETLEQIINPDGRNA----------------------EACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred hhhhhHHHHHHhcCCHHHHHHHHhcccCCCccch----------------------hhccccHHHHHHHHHHHHHHHhhh
Confidence 7888899999999999999999999876663200 000111111111111122222223
Q ss_pred cchhhHHHHHHHHhCCC---------------------CCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCCceeehhh
Q 001763 642 FHLGTQIHCLIVKKGLL---------------------FDDDFLHIALLSMYMNSKRNTDARLLFTEFPNPKSTVLWTAV 700 (1017)
Q Consensus 642 ~~~a~~~~~~~~~~~~~---------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 700 (1017)
.++-..+...++...+. +........+..+-.+.++.....+-..
T Consensus 542 ~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~-------------- 607 (895)
T KOG2076|consen 542 REEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALS-------------- 607 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhccc--------------
Confidence 22222222222211100 0111111111111111111111110000
Q ss_pred hhhcccCCCchHHHHHHHHHHHCCCCcCH--HhHHHHHHHHhccCcHHHHHHHHHHHHHhCCC-CCc----chHhHHHhH
Q 001763 701 ISGHAQNDSNYEALHFYREMRSHNVLPDQ--ATFVSVLRACAVLSSLRDGGEIHSLIFHTGYD-LDE----ITGSALIDM 773 (1017)
Q Consensus 701 i~~~~~~g~~~~A~~~~~~m~~~~~~pd~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~l~~~ 773 (1017)
+. ..+.--...|+.-|. .-+.-++.+..+.+.+++|..+...+.....- .+. ..-...+.+
T Consensus 608 -----------d~-~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~ 675 (895)
T KOG2076|consen 608 -----------DG-TEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKA 675 (895)
T ss_pred -----------ch-hhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHH
Confidence 00 011111111222221 22344455666677777777766655433221 111 223344555
Q ss_pred HHhcCCHHHHHHHHHhccCC-----Ch--hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHH--HHHcccC
Q 001763 774 YAKCGDVKRSAQVFDEMAER-----NY--VISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGV--LTACSHA 844 (1017)
Q Consensus 774 y~~~g~~~~A~~~~~~~~~~-----~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l--~~~~~~~ 844 (1017)
....+++.+|...+..|... ++ ...||...+...++|+-.-=.+.+..+.. .+|+......+ +.-....
T Consensus 676 s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~ 753 (895)
T KOG2076|consen 676 SLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVN 753 (895)
T ss_pred HHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhc
Confidence 56667777777777766543 22 23566655555555543333333333333 23333111112 2223446
Q ss_pred CcHHHHHHHHHHhhhhcCCCcC-chhHHHHHHhh----------hccCCHHHHHHHHHhC---CCCC-CHHHHHHHHHHH
Q 001763 845 GRVSEGRQIFETMVSCHGIQPR-VDHCACMVDLL----------GRWGFLKEAEEFIEQL---TFEP-DSRIWTTLLGAC 909 (1017)
Q Consensus 845 g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~l----------~~~g~~~eA~~~~~~~---~~~p-~~~~~~~ll~~~ 909 (1017)
+.+.-|+..|-..-. ..|+ +..--||+-++ .|.-..-.+..++.+. ...- .-.+..+++.+|
T Consensus 754 ~s~~~Al~~y~ra~~---~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRay 830 (895)
T KOG2076|consen 754 ASFKHALQEYMRAFR---QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAY 830 (895)
T ss_pred cchHHHHHHHHHHHH---hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 667777776666544 4454 33323333222 2222344555555442 2111 233778899999
Q ss_pred HhcCCchHHHHHHHHHHhhCCCC------------CchHHHHHHHHHhcCCcHHHHHHHHH
Q 001763 910 GVHRDDIRGRLAAKKLIELEPEN------------PSPYVQLSNIYAALGNWNEVNTLRRE 958 (1017)
Q Consensus 910 ~~~g~~~~a~~~~~~~l~~~p~~------------~~~~~~l~~~y~~~g~~~~a~~~~~~ 958 (1017)
..-|=...|+..|+++|+..|.+ -.+-++|.-||...|+.+.|.++.++
T Consensus 831 h~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 831 HQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred HHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 99999999999999999997632 33567889999999999999988753
No 28
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.75 E-value=2.1e-15 Score=164.70 Aligned_cols=671 Identities=12% Similarity=0.057 Sum_probs=334.9
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHcCCCchhHHHhhhcCCCCC
Q 001763 142 KSFGLLCNRGGVPNGFTFAIVLSACSKSMDVSYGRQLHCHVIELGFESSSFCKGALIDMYAKLNNVSDARRVFDGAVDLD 221 (1017)
Q Consensus 142 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~ 221 (1017)
.++..|...|+.||.+||.++|..||..|+.+.|- +|..|.-........+++.++.+..+.|+.+.+. .|-
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45667777788888888888888888888887777 8887777777777778888888777777776665 566
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHhcC-CC-CccchHHHHHHHh
Q 001763 222 TVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEARELFAQMQ-NP-NVVAWNVMISGHA 299 (1017)
Q Consensus 222 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~-~~-~~~~~~~li~~~~ 299 (1017)
..+|+.+..+|.+.||... |+...+ ....+...+...|.-.....++..+. .| ....-...+.-..
T Consensus 83 aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv 150 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLV 150 (1088)
T ss_pred hhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHH
Confidence 6778888888888877665 222222 11122333333333333333333221 00 0001111222222
Q ss_pred ccCCchHHHHHHHHHHhcC-CCCChhhHHHHHHHHhcccchhHHHHHHHHHHHhCCCCchhhhHHHHHHHHccCChhHHH
Q 001763 300 KRGYDAEAVNYFKRMRKAG-VKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAK 378 (1017)
Q Consensus 300 ~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 378 (1017)
-.|.++.+++++..+.... ..| +..+++-+.. -...+++-.
T Consensus 151 ~eglwaqllkll~~~Pvsa~~~p----~~vfLrqnv~----------------------------------~ntpvekLl 192 (1088)
T KOG4318|consen 151 LEGLWAQLLKLLAKVPVSAWNAP----FQVFLRQNVV----------------------------------DNTPVEKLL 192 (1088)
T ss_pred HHHHHHHHHHHHhhCCcccccch----HHHHHHHhcc----------------------------------CCchHHHHH
Confidence 3333444444333322110 000 0001111111 111222222
Q ss_pred HHHhhcCC-CCcchHHHHHHHHHhCCChhHHHHHHHhhhhcCCCCChhcHHHHHHhhhcccchHhhHHHHHHHHHhcCCc
Q 001763 379 KVFDSLDE-RNAVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLAT 457 (1017)
Q Consensus 379 ~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~ 457 (1017)
.+.....+ .+..++.+.+..-..+|+.+.|..++.+|.+.|+..+.+-|..++-+ .++......+..-|...|+.|
T Consensus 193 ~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p 269 (1088)
T KOG4318|consen 193 NMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQP 269 (1088)
T ss_pred HHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCC
Confidence 22222333 56667777777777777777777777777777777777766666655 566666666777777777777
Q ss_pred hhhHHHHHHHHhhccCChhHHHHHHhhcCCCCcccchhhhHHhHhcCCHHHHHHHHHHhhccCCCCCcccHHHHHHHhhc
Q 001763 458 NLYVGNALVDMYAKSRALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACAN 537 (1017)
Q Consensus 458 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~ 537 (1017)
+..|+...+....+.|....+... .+....+++-..+-+-.| ..|.+.++.-... .++.
T Consensus 270 ~seT~adyvip~l~N~~t~~~~e~-----sq~~hg~tAavrsaa~rg--~~a~k~l~~nl~~----------~v~~---- 328 (1088)
T KOG4318|consen 270 GSETQADYVIPQLSNGQTKYGEEG-----SQLAHGFTAAVRSAACRG--LLANKRLRQNLRK----------SVIG---- 328 (1088)
T ss_pred CcchhHHHHHhhhcchhhhhcccc-----cchhhhhhHHHHHHHhcc--cHhHHHHHHHHHH----------HHHH----
Confidence 777776665555554432222111 111111111111111122 1122211111000 0000
Q ss_pred ccCCCcchhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCCCC-------CchhHHHHHHHHhhCCchHH
Q 001763 538 IQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQR-------NVVSMNALIAGYAQNNVEDA 610 (1017)
Q Consensus 538 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~A 610 (1017)
.+....-.|++. ...+|. ++.-..-.|.-++...+-..+..| ++-.+...+.
T Consensus 329 ---------s~k~~fLlg~d~-~~aiws-~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lr---------- 387 (1088)
T KOG4318|consen 329 ---------STKKLFLLGTDI-LEAIWS-MCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLR---------- 387 (1088)
T ss_pred ---------HhhHHHHhcccc-chHHHH-HHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHH----------
Confidence 000000011111 001111 111111144444444444444432 1222222222
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCC
Q 001763 611 VVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPN 690 (1017)
Q Consensus 611 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 690 (1017)
+.|.+..... +...+. +-.+.+..-+.+....+-+.+... +-..+.+.......
T Consensus 388 -qyFrr~e~~~---~~~i~~-~~qgls~~l~se~tp~vsell~~l---------------------rkns~lr~lv~Lss 441 (1088)
T KOG4318|consen 388 -QYFRRIERHI---CSRIYY-AGQGLSLNLNSEDTPRVSELLENL---------------------RKNSFLRQLVGLSS 441 (1088)
T ss_pred -HHHHHHHhhH---HHHHHH-HHHHHHhhhchhhhHHHHHHHHHh---------------------CcchHHHHHhhhhH
Confidence 2232222210 000000 001111100000001111111110 00111111111100
Q ss_pred ---CCCceee-----------hhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHH
Q 001763 691 ---PKSTVLW-----------TAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIF 756 (1017)
Q Consensus 691 ---~~~~~~~-----------~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 756 (1017)
.+....| +.++..++..-+..+++..-++.... .-| -.|..++.-|.....++.|..+.+++.
T Consensus 442 ~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d 518 (1088)
T KOG4318|consen 442 TELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEID 518 (1088)
T ss_pred HHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhc
Confidence 0222222 23444455555555555433333221 112 457888999999999999999988775
Q ss_pred Hh--CCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC-----CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 001763 757 HT--GYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE-----RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMP 829 (1017)
Q Consensus 757 ~~--~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 829 (1017)
.. .+..|..-+..+.+.+.+.+...++..++.++++ +....+..-+.++-+..|+.+.-.++++-+...|+.-
T Consensus 519 ~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 519 TRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred ccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 33 3445777888999999999999999999998876 2222355677888888999998888888888777643
Q ss_pred ChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCc-hhHHHHHH------------------hhhccCCHHHHHHHH
Q 001763 830 DDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRV-DHCACMVD------------------LLGRWGFLKEAEEFI 890 (1017)
Q Consensus 830 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~------------------~l~~~g~~~eA~~~~ 890 (1017)
| ..|.......++...|++.++....+|.+.|.. +.+..++. .|.+.|++.+|.+.+
T Consensus 599 ---t-gPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~ 674 (1088)
T KOG4318|consen 599 ---T-GPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDIT 674 (1088)
T ss_pred ---c-ccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhcc
Confidence 2 345556778889999999999888877777753 33333322 245555555555555
Q ss_pred HhCCC--CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHH
Q 001763 891 EQLTF--EPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMR 960 (1017)
Q Consensus 891 ~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 960 (1017)
+.-.+ +|. | ..|...|...- .+..+++- +.......|-..|.+.|+|+.|..+|.+|+
T Consensus 675 etpG~r~r~~---R----Dr~~de~e~~~----lEll~elt-~~lg~~dRLL~sy~~~g~~erA~glwnK~Q 734 (1088)
T KOG4318|consen 675 ETPGVRCRNG---R----DRDTDEGEIVP----LELLLELT-HELGKNDRLLQSYLEEGRIERASGLWNKDQ 734 (1088)
T ss_pred ccCcccccCC---C----ccccccCcccc----HHHHHHHH-hHhHHHHHHHHHHHhhhHHHHHHhHHhhCc
Confidence 44321 110 0 11222222222 22222221 122333447788889999999998888887
No 29
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.73 E-value=4.5e-15 Score=178.01 Aligned_cols=222 Identities=12% Similarity=0.100 Sum_probs=153.6
Q ss_pred hHHHHHHHHHHHC-CCCcCHH-hH----HHHHHHHhccCcHHHHHHHHHHHHHhCCC-CCcchHhHHHhHHHhcCCHHHH
Q 001763 711 YEALHFYREMRSH-NVLPDQA-TF----VSVLRACAVLSSLRDGGEIHSLIFHTGYD-LDEITGSALIDMYAKCGDVKRS 783 (1017)
Q Consensus 711 ~~A~~~~~~m~~~-~~~pd~~-t~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~y~~~g~~~~A 783 (1017)
++|++.++.+.+. ...|+.. .+ ...+.++...|++++|+..++.+.+.+.. |+ .....++.+|...|++++|
T Consensus 213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A 291 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKA 291 (765)
T ss_pred HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHH
Confidence 5666666666643 1223221 11 11133445667778888888777766532 22 1223357778888888888
Q ss_pred HHHHHhccCCCh------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-----------CCCCh---HhHHHHHHHccc
Q 001763 784 AQVFDEMAERNY------VISWNSMIVGFAKNGYAEDALKVFHEMKETQ-----------AMPDD---VTFLGVLTACSH 843 (1017)
Q Consensus 784 ~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~---~~~~~l~~~~~~ 843 (1017)
+..|+++...+. ...+..+..++...|++++|++.++++.+.. -.|+. ..+..+..++..
T Consensus 292 ~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~ 371 (765)
T PRK10049 292 QSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY 371 (765)
T ss_pred HHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH
Confidence 888887654221 1135556667788888888888888887742 12332 234567778888
Q ss_pred CCcHHHHHHHHHHhhhhcCCCc-CchhHHHHHHhhhccCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCchHHHH
Q 001763 844 AGRVSEGRQIFETMVSCHGIQP-RVDHCACMVDLLGRWGFLKEAEEFIEQL-TFEPDS-RIWTTLLGACGVHRDDIRGRL 920 (1017)
Q Consensus 844 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~ 920 (1017)
.|+.++|++.++++.. ..| +...+..++.++...|+.++|++.+++. ...||. ..+..++......|+++.|+.
T Consensus 372 ~g~~~eA~~~l~~al~---~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~ 448 (765)
T PRK10049 372 SNDLPQAEMRARELAY---NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDV 448 (765)
T ss_pred cCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 9999999999999887 344 4567788889999999999999999886 467764 466677777888899999999
Q ss_pred HHHHHHhhCCCCCchH
Q 001763 921 AAKKLIELEPENPSPY 936 (1017)
Q Consensus 921 ~~~~~l~~~p~~~~~~ 936 (1017)
.++++++.+|+++.+.
T Consensus 449 ~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 449 LTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHHhCCCCHHHH
Confidence 9999999999988553
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.69 E-value=1.1e-12 Score=144.91 Aligned_cols=650 Identities=11% Similarity=0.037 Sum_probs=367.1
Q ss_pred HHhhcCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHcCCCchhHHHhhh---cCCCCCcchHHHHHHHHHHcCChhH
Q 001763 164 SACSKSMDVSYGRQLHCHVIELGFESSSFCKGALIDMYAKLNNVSDARRVFD---GAVDLDTVSWTSMIAGYVQAGLPEA 240 (1017)
Q Consensus 164 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~---~~~~~~~~~~~~li~~~~~~g~~~~ 240 (1017)
+.+...|++++|..++.++++.. +.....|-.|...|-..|+.+++...+- ...+.|..-|-.+-.-..+.|++++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence 33344499999999999999985 4566789999999999999999988764 3455677889999999999999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHhcCCCCc--------cchHHHHHHHhccCCchHHHHHHH
Q 001763 241 AFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEARELFAQMQNPNV--------VAWNVMISGHAKRGYDAEAVNYFK 312 (1017)
Q Consensus 241 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~--------~~~~~li~~~~~~g~~~~A~~~~~ 312 (1017)
|.-.|.+.++.. +++...+-.-...|-+.|+...|...|.++..-+. ..--.++..|...++-+.|.+.++
T Consensus 226 A~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 226 ARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999986 66666666778889999999999999998876222 122234555666777778887777
Q ss_pred HHHhc-CCCCChhhHHHHHHHHhcccchhHHHHHHHHHHHhCCCCchhhhHHHHHHHHccCChhHHHHHHhhcCC---CC
Q 001763 313 RMRKA-GVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFDSLDE---RN 388 (1017)
Q Consensus 313 ~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~ 388 (1017)
..... +-..+...++.++..+......+.+............++|..-+.. +. .++. . ...|-.... .+
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~----~~-~~~~-~-~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDT----DE-RRRE-E-PNALCEVGKELSYD 377 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhh----hh-hccc-c-ccccccCCCCCCcc
Confidence 76652 2223333444555555555555554444433333222222111100 00 0000 0 000000000 01
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHhhhhcC--CCCChhcHHHHHHhhhcccchHhhHHHHHHHHHhcCCchhhHHHHHH
Q 001763 389 AVLWNALLGGYSQNCYAHEVVDLFFAMKSSG--FHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLATNLYVGNALV 466 (1017)
Q Consensus 389 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 466 (1017)
... --+.-++.+....+....+.....+.. +.-+...|.-+..++...|.+..|..++..+.......+..+|-.+.
T Consensus 378 l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 378 LRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred chh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 111 112223333333333333333333433 33344467778888888899999999988888876666788899999
Q ss_pred HHhhccCChhHHHHHHhhcCCCCcccc---hhhhHHhHhcCCHHHHHHHHHHhhccCCCCCcccHHHHHHHhhcccCCCc
Q 001763 467 DMYAKSRALEEARKQFERIQNQDNVSW---NAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQ 543 (1017)
Q Consensus 467 ~~~~~~g~~~~A~~~f~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 543 (1017)
.+|...|..+.|.+.|+.+..-++... -+|-..+-+.|+.++|++++..|. .||..+
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~----~~D~~~---------------- 516 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII----NPDGRN---------------- 516 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc----CCCccc----------------
Confidence 999999999999999998876443333 345567888999999999999886 344321
Q ss_pred chhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCCCCCchhHHHHHHHHhhCCchHHHHHHHHHHHcCCC
Q 001763 544 GEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNVEDAVVLYRGMQTEGLS 623 (1017)
Q Consensus 544 ~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~A~~l~~~m~~~g~~ 623 (1017)
....+..+ +..+.-...+.|...|+.++-..+-..|.. ......++. -++...+.... ...+.+
T Consensus 517 -------~e~~a~~~-e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~--~~~~~~~~f--~~~~k~r~~~~----~~~~~~ 580 (895)
T KOG2076|consen 517 -------AEACAWEP-ERRILAHRCDILFQVGKREEFINTASTLVD--DFLKKRYIF--PRNKKKRRRAI----AGTTSK 580 (895)
T ss_pred -------hhhccccH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HHHHHHHhc--chHHHHHHHhh----cccccc
Confidence 01111222 555556667777777877764444333321 001111110 00000000000 000011
Q ss_pred CChHHHHHHHHhccCCCccchhhH------HHHHHHHhCCCCCch-HHHHHHHHHHHhcCChHHHHHHHhhCCC-----C
Q 001763 624 PNDITFTSLLDACDGPYKFHLGTQ------IHCLIVKKGLLFDDD-FLHIALLSMYMNSKRNTDARLLFTEFPN-----P 691 (1017)
Q Consensus 624 p~~~t~~~ll~a~~~~~~~~~a~~------~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~ 691 (1017)
-...+.-....+-.+.++.....+ ........|+.-++. .....++..+.+.++.++|..+...+.. .
T Consensus 581 ~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~ 660 (895)
T KOG2076|consen 581 RYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQ 660 (895)
T ss_pred ccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhc
Confidence 111111112222222211111110 011111123222233 4556677788889999999988776654 0
Q ss_pred CCc---eeehhhhhhcccCCCchHHHHHHHHHHHC-CC--CcCH-HhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCc
Q 001763 692 KST---VLWTAVISGHAQNDSNYEALHFYREMRSH-NV--LPDQ-ATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDE 764 (1017)
Q Consensus 692 ~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~--~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 764 (1017)
+.. ..-..++.+....+++.+|.+.++.|... +. .|.. ..|+..++.....++-.--.+....+.......++
T Consensus 661 ~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~ 740 (895)
T KOG2076|consen 661 DSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTP 740 (895)
T ss_pred cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCc
Confidence 111 12234566677888999999999988764 11 2222 23443444444444433333333333333333234
Q ss_pred chHhHHHhHHHhcCCHHHHHHHHHhccC--CChh-------HHHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCCC-Ch
Q 001763 765 ITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYV-------ISWNSMIVGF---AKNGYAEDALKVFHEMKETQAMP-DD 831 (1017)
Q Consensus 765 ~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~-------~~~~~l~~~~---~~~g~~~~A~~~~~~m~~~g~~p-~~ 831 (1017)
..+..-+.....+|.+..|...+-++.. |+.+ .++..+...- .+|-..-+++..+.+-.+....- ..
T Consensus 741 ~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~Q 820 (895)
T KOG2076|consen 741 PLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQ 820 (895)
T ss_pred ceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHH
Confidence 4444555666778888888887765543 4432 1122221111 12223345555555555532111 23
Q ss_pred HhHHHHHHHcccCCcHHHHHHHHHHhhh
Q 001763 832 VTFLGVLTACSHAGRVSEGRQIFETMVS 859 (1017)
Q Consensus 832 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 859 (1017)
..+.+++.+|-+.|.+.-|..+|+++++
T Consensus 821 Ea~YNigRayh~~gl~~LA~~YYekvL~ 848 (895)
T KOG2076|consen 821 EAFYNIGRAYHQIGLVHLAVSYYEKVLE 848 (895)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhC
Confidence 6777888888888888888888888876
No 31
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.68 E-value=2.3e-13 Score=159.36 Aligned_cols=450 Identities=10% Similarity=0.083 Sum_probs=246.6
Q ss_pred HccCChhHHHHHHhhcCCCCcc---hHHHHHHHHHhCCChhHHHHHHHhhhhcCCCCChhcHHH---HHHhhhcccchHh
Q 001763 369 AKCEKMESAKKVFDSLDERNAV---LWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTS---ILSSCACLEYLEM 442 (1017)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~---ll~a~~~~~~~~~ 442 (1017)
.+.|+++.|...|++..+.+.. ....++..+...|+.++|+..+++.. .|+...+.. +...+...|+++.
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3445555555555544432211 12244444444455555555555444 122211111 1223334455555
Q ss_pred hHHHHHHHHHhcCCchhhHHHHHHHHhhccCChhHHHHHHhhcCCCCcccchhhhHHhHh--cCCHHHHHHHHHHhhccC
Q 001763 443 GRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQNQDNVSWNAIIVGYVQ--EGDVFEAFNMFRRMNLVG 520 (1017)
Q Consensus 443 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g 520 (1017)
|.++++.+++.... +..++..++..|...++.++|.+.++++...+......+..+|.. .++..+|++.++++.+.
T Consensus 121 Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~- 198 (822)
T PRK14574 121 ALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL- 198 (822)
T ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh-
Confidence 55555555444322 234445667778888888888888888876554433334445544 45555689999988874
Q ss_pred CCCCcccHHHHHHHhhcccCCCcchhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCCCC-CchhHHHHH
Q 001763 521 IVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQR-NVVSMNALI 599 (1017)
Q Consensus 521 ~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~-~~~~~~~li 599 (1017)
.|+ +...+..++....+.|-...|.++..+-++- +...+.-+-
T Consensus 199 -~P~-----------------------------------n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~ 242 (822)
T PRK14574 199 -APT-----------------------------------SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLE 242 (822)
T ss_pred -CCC-----------------------------------CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHH
Confidence 454 6777778888888888888888887766520 000000000
Q ss_pred HHHhhCCchHHHHHHHHHHHcCCCCChHHHHHHHHhccCCCcc---chhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Q 001763 600 AGYAQNNVEDAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKF---HLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSK 676 (1017)
Q Consensus 600 ~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~---~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 676 (1017)
.. .|. ++++.+..|+.. ....+ +.+..-...++
T Consensus 243 ~~-------~~a----~~vr~a~~~~~~----------~~~r~~~~d~ala~~~~l~----------------------- 278 (822)
T PRK14574 243 RD-------AAA----EQVRMAVLPTRS----------ETERFDIADKALADYQNLL----------------------- 278 (822)
T ss_pred HH-------HHH----HHHhhccccccc----------chhhHHHHHHHHHHHHHHH-----------------------
Confidence 00 011 111111111000 00011 11111111111
Q ss_pred ChHHHHHHHhhCCC-CCCceee----hhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHH
Q 001763 677 RNTDARLLFTEFPN-PKSTVLW----TAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEI 751 (1017)
Q Consensus 677 ~~~~A~~~~~~~~~-~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~ 751 (1017)
...+. |+....| --.+.++...|++.+++..|+.+...+.+....+-..+.++|...+..++|..+
T Consensus 279 ---------~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l 349 (822)
T PRK14574 279 ---------TRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPI 349 (822)
T ss_pred ---------hhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence 11111 1111111 123455667777888888888887776543344666777777777777777777
Q ss_pred HHHHHHhCCC-----CCcchHhHHHhHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 001763 752 HSLIFHTGYD-----LDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQ 826 (1017)
Q Consensus 752 ~~~~~~~~~~-----~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 826 (1017)
+..+.....+ ++......|.-+|...+++++|..+++++.+..+. - +.-+ |.. ...
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~-~----~~~~---~~~-----------~~~ 410 (822)
T PRK14574 350 LSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPY-Q----VGVY---GLP-----------GKE 410 (822)
T ss_pred HHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc-E----Eecc---CCC-----------CCC
Confidence 7777554321 12233455666667777777777777766652110 0 0000 000 011
Q ss_pred CCCChH-hHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCc-CchhHHHHHHhhhccCCHHHHHHHHHhC-CCCCCHH-HH
Q 001763 827 AMPDDV-TFLGVLTACSHAGRVSEGRQIFETMVSCHGIQP-RVDHCACMVDLLGRWGFLKEAEEFIEQL-TFEPDSR-IW 902 (1017)
Q Consensus 827 ~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~~~-~~ 902 (1017)
.+||-. .+..++..+...|++.+|++.++.+.. ..| |......+.+++...|+..+|++.++.. ...|+.. +.
T Consensus 411 pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~---~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~ 487 (822)
T PRK14574 411 PNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS---TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILE 487 (822)
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHH
Confidence 234433 334455667778888888888888866 344 5667777888888888888888888665 3566543 55
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhCCCCCch
Q 001763 903 TTLLGACGVHRDDIRGRLAAKKLIELEPENPSP 935 (1017)
Q Consensus 903 ~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~ 935 (1017)
...+.+....|++..|+.+.+++++..|+++..
T Consensus 488 ~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 488 RAQAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 566667777889999999999999999988744
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=4.3e-13 Score=134.90 Aligned_cols=249 Identities=17% Similarity=0.145 Sum_probs=189.4
Q ss_pred HHHhcCCCCccchHHHHHHHhccCCchHHHHHHHHHHhcCCCCChhhHHHHHHHHhcccchhHHHHHHHHHHHhCCCCch
Q 001763 279 LFAQMQNPNVVAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNV 358 (1017)
Q Consensus 279 ~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 358 (1017)
++-+....+..+|.+||.|+|+--..+.|.++|++-.....+.+..+|+.+|.+..-. .++.+..+|+...+.||.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCch
Confidence 4555555677899999999999999999999999999888999999999999876533 348899999999999999
Q ss_pred hhhHHHHHHHHccCChhHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHhhhhcCCCCChhcHHHHHHhhhccc
Q 001763 359 YVASSLINMYAKCEKMESAKKVFDSLDERNAVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLE 438 (1017)
Q Consensus 359 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 438 (1017)
.++|+++.+..+.|+++.|.+. |++++.+|++-|+.|.-.+|..+|.-+++.+
T Consensus 274 ~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVePsLsSyh~iik~f~re~ 326 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEPSLSSYHLIIKNFKRES 326 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCcchhhHHHHHHHhcccC
Confidence 9999999999999999988765 4556677777778887777777777777666
Q ss_pred chHh-hHHHHHHHHHh----cCCc----hhhHHHHHHHHhhccCChhHHHHHHhhcCCCC-----------cccchhhhH
Q 001763 439 YLEM-GRQLHAVIIKN----KLAT----NLYVGNALVDMYAKSRALEEARKQFERIQNQD-----------NVSWNAIIV 498 (1017)
Q Consensus 439 ~~~~-a~~~~~~~~~~----~~~~----~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~-----------~~~~~~li~ 498 (1017)
+..+ +..+...+... .++| |...+..-++.+.+..+.+-|.++-.-....+ ..-|..+..
T Consensus 327 dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~ 406 (625)
T KOG4422|consen 327 DPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFD 406 (625)
T ss_pred CchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHH
Confidence 5533 33333333221 1222 34444555556667777777776655544321 123455667
Q ss_pred HhHhcCCHHHHHHHHHHhhccCCCCCcccHHHHHHHhhcccCCCcchhHHHHHhhhCCCC
Q 001763 499 GYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLET 558 (1017)
Q Consensus 499 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~ 558 (1017)
..++....+.-+..|+.|.-.-+.|+..+...+++|....+.++...+++..++..|...
T Consensus 407 licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~ 466 (625)
T KOG4422|consen 407 LICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTF 466 (625)
T ss_pred HHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhh
Confidence 788888899999999999998899999999999999999999999888888888766443
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=1.2e-12 Score=131.80 Aligned_cols=334 Identities=14% Similarity=0.115 Sum_probs=242.5
Q ss_pred chhHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHhhcC--CChh-HHHHHHHHHHHhcCCCCcchHHHH
Q 001763 121 ILAWNSILSMYSKRGSFENVFKSFGLLCNRGGVPNGFTFAIVLSACSKS--MDVS-YGRQLHCHVIELGFESSSFCKGAL 197 (1017)
Q Consensus 121 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--~~~~-~a~~~~~~~~~~g~~~~~~~~~~l 197 (1017)
+++=|.|+... .+|..+++.-+|+.|+..|+..+...-..+++..+-. .++- .-.+.|-.|...|-. +..+|
T Consensus 116 V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW--- 190 (625)
T ss_pred hcchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc---
Confidence 44566666644 4688999999999999999988877666666553322 2222 223344444444422 22232
Q ss_pred HHHHHcCCCchhHHHhhhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHH
Q 001763 198 IDMYAKLNNVSDARRVFDGAVDLDTVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEAR 277 (1017)
Q Consensus 198 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 277 (1017)
|.|.+.+ ++-+...++..+|..||.|+|+--..++|.+++++-.....+.+..+||.+|.+-.-.-+ .
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----K 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----H
Confidence 4454443 445555667789999999999999999999999999998889999999999987654444 4
Q ss_pred HHHHhcC----CCCccchHHHHHHHhccCCchH----HHHHHHHHHhcCCCCChhhHHHHHHHHhcccchhH-HHHHHHH
Q 001763 278 ELFAQMQ----NPNVVAWNVMISGHAKRGYDAE----AVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDF-GLIVHAE 348 (1017)
Q Consensus 278 ~~~~~m~----~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~ 348 (1017)
+++.+|. .||..|+|+++++..+.|+++. |.+++.+|++.|+.|...+|..+|.-+++.++..+ +..+..+
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 5555554 5999999999999999998876 45778899999999999999999999988887754 3344444
Q ss_pred HHH----hCCCC----chhhhHHHHHHHHccCChhHHHHHHhhcCCC-----------CcchHHHHHHHHHhCCChhHHH
Q 001763 349 AIK----QGLYS----NVYVASSLINMYAKCEKMESAKKVFDSLDER-----------NAVLWNALLGGYSQNCYAHEVV 409 (1017)
Q Consensus 349 ~~~----~g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~ 409 (1017)
+.. ..+.| |...+..-+..+.+..+.+-|.++-.-.... ..+-|..+....++....+..+
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433 22322 4455566667777888888888776554432 1223566777888888999999
Q ss_pred HHHHhhhhcCCCCChhcHHHHHHhhhcccchHhhHHHHHHHHHhcCCchhhHHHHHHHHhhc
Q 001763 410 DLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAK 471 (1017)
Q Consensus 410 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 471 (1017)
..|+.|.-.-+-|+..+...++.+....+.++...+++..++..|...+....--++..+++
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~ 480 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR 480 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc
Confidence 99999998888899999999999999999999999999888888765554444444444443
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.64 E-value=5.9e-11 Score=126.10 Aligned_cols=496 Identities=12% Similarity=0.077 Sum_probs=297.3
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHhcccchhHHHHHHHHHHHhCCCCchhhhHHHHHHHHccCChhHHHHHHhhcC
Q 001763 306 EAVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFDSLD 385 (1017)
Q Consensus 306 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 385 (1017)
.=.+++++..+ ..|+.. .|-.+.....+.+.|..++...++.-.. +.. |.-+|.+...++.|.++++...
T Consensus 364 ~K~RVlRKALe--~iP~sv---~LWKaAVelE~~~darilL~rAveccp~-s~d----LwlAlarLetYenAkkvLNkaR 433 (913)
T KOG0495|consen 364 NKKRVLRKALE--HIPRSV---RLWKAAVELEEPEDARILLERAVECCPQ-SMD----LWLALARLETYENAKKVLNKAR 433 (913)
T ss_pred HHHHHHHHHHH--hCCchH---HHHHHHHhccChHHHHHHHHHHHHhccc-hHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666655 345443 2334445556666677777777765332 233 3445667777888988888766
Q ss_pred C---CCcchHHHHHHHHHhCCChhHHHHHHHh----hhhcCCCCChhcHHHHHHhhhcccchHhhHHHHHHHHHhcCCc-
Q 001763 386 E---RNAVLWNALLGGYSQNCYAHEVVDLFFA----MKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLAT- 457 (1017)
Q Consensus 386 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~- 457 (1017)
+ .+...|.+-...--++|+.+....++.+ +...|+..+...|..=..+|-..|..-....+...++..|+..
T Consensus 434 e~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEee 513 (913)
T KOG0495|consen 434 EIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEE 513 (913)
T ss_pred hhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccc
Confidence 4 4777888777777788888888887765 4567888888888887788888888888888888888877754
Q ss_pred -hhhHHHHHHHHhhccCChhHHHHHHhhcCC---CCcccchhhhHHhHhcCCHHHHHHHHHHhhccCCCCCc-ccHHHHH
Q 001763 458 -NLYVGNALVDMYAKSRALEEARKQFERIQN---QDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDD-VSSASIL 532 (1017)
Q Consensus 458 -~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll 532 (1017)
-..+|+.-.+.+.+.+.++-|+.+|....+ .+.+.|...+..--.+|..++-..+|++.... .|-. ..+....
T Consensus 514 d~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~a 591 (913)
T KOG0495|consen 514 DRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYA 591 (913)
T ss_pred hhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHH
Confidence 345777777888899999999998887765 35567887777777788888888888888764 2322 2222223
Q ss_pred HHhhcccCCCcchhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCCCCCchhHHHHHHHHhhCCchHHHH
Q 001763 533 SACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNVEDAVV 612 (1017)
Q Consensus 533 ~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~A~~ 612 (1017)
+-.-..|++..++.+...+.+.... +..++-+-+..-.....++.|+.+|.+.
T Consensus 592 ke~w~agdv~~ar~il~~af~~~pn--seeiwlaavKle~en~e~eraR~llaka------------------------- 644 (913)
T KOG0495|consen 592 KEKWKAGDVPAARVILDQAFEANPN--SEEIWLAAVKLEFENDELERARDLLAKA------------------------- 644 (913)
T ss_pred HHHHhcCCcHHHHHHHHHHHHhCCC--cHHHHHHHHHHhhccccHHHHHHHHHHH-------------------------
Confidence 3333445555555555555443322 3444444555555555555555555443
Q ss_pred HHHHHHHcCCCCChHHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCC--
Q 001763 613 LYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPN-- 690 (1017)
Q Consensus 613 l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 690 (1017)
.. ..|+...|.--..--.-.++.++|.++++..++.- |.-...+..++.++.+.++++.|++.|..-..
T Consensus 645 -----r~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c 715 (913)
T KOG0495|consen 645 -----RS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSF--PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC 715 (913)
T ss_pred -----hc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC
Confidence 33 34444444443333444566777777777766665 56667777777778888888877777765443
Q ss_pred CCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHH
Q 001763 691 PKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSAL 770 (1017)
Q Consensus 691 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 770 (1017)
|..+..|-.|...-- +.|.+-+|+.+++...-.+|+ +...|...
T Consensus 716 P~~ipLWllLakleE-----------------------------------k~~~~~rAR~ildrarlkNPk-~~~lwle~ 759 (913)
T KOG0495|consen 716 PNSIPLWLLLAKLEE-----------------------------------KDGQLVRARSILDRARLKNPK-NALLWLES 759 (913)
T ss_pred CCCchHHHHHHHHHH-----------------------------------HhcchhhHHHHHHHHHhcCCC-cchhHHHH
Confidence 334444444444433 444444555555554444444 45555555
Q ss_pred HhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCCcHH
Q 001763 771 IDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVS 848 (1017)
Q Consensus 771 ~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 848 (1017)
|.+=.+.|..+.|..+..+... |+....|..-|......++-.+....+++. .-|...+..+...+-...+++
T Consensus 760 Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~ 834 (913)
T KOG0495|consen 760 IRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIE 834 (913)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHH
Confidence 5555555555555555544433 333234555555555555544444444332 223334444455555555566
Q ss_pred HHHHHHHHhhhhcCCCcCc-hhHHHHHHhhhccCCHHHHHHHHHhC
Q 001763 849 EGRQIFETMVSCHGIQPRV-DHCACMVDLLGRWGFLKEAEEFIEQL 893 (1017)
Q Consensus 849 ~a~~~~~~m~~~~~~~p~~-~~~~~l~~~l~~~g~~~eA~~~~~~~ 893 (1017)
.|.+.|++.++ +.|+. +.|..+...+.+.|.-++-.+++.+.
T Consensus 835 kar~Wf~Ravk---~d~d~GD~wa~fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 835 KAREWFERAVK---KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred HHHHHHHHHHc---cCCccchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 66666666554 34432 34555555555666555555555543
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=4.3e-13 Score=135.45 Aligned_cols=481 Identities=11% Similarity=0.076 Sum_probs=297.1
Q ss_pred HHHHHHHhCCChhHHHHHHHhhhhcCCCCChhcHH-HHHHhhhcccchHhhHHHHHHHHHhcCCc----hhhHHHHHHHH
Q 001763 394 ALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYT-SILSSCACLEYLEMGRQLHAVIIKNKLAT----NLYVGNALVDM 468 (1017)
Q Consensus 394 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~ 468 (1017)
.|..-|..+....+|+..|+-+.+...-|+.-.+- .+-..+.+...+..|..+++..++.-... .+.+.+.+.-.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 34556777778889999998888877777764332 23344566778888888888777653222 23344555556
Q ss_pred hhccCChhHHHHHHhhcCC--CCcccchhhhHHhHhcCCHHHHHHHHHHhhccCCCCCcccHHHHHHHhhcccCCCcchh
Q 001763 469 YAKSRALEEARKQFERIQN--QDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQ 546 (1017)
Q Consensus 469 ~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~ 546 (1017)
+.+.|+++.|+..|+...+ |+..+--.||-.+.--|+.++..+.|.+|..-...||..-|.
T Consensus 286 fiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi----------------- 348 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYI----------------- 348 (840)
T ss_pred EEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccccc-----------------
Confidence 7788899999888887654 555543334444555678888888888888765555543221
Q ss_pred HHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCCCCCchhHHHHHHHHhhCCch---HHHHHHHHHHHcCCC
Q 001763 547 VHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNVE---DAVVLYRGMQTEGLS 623 (1017)
Q Consensus 547 i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~---~A~~l~~~m~~~g~~ 623 (1017)
+..-+| +..+.+.- .+...+ +.|. +.+.. +++-.--+++.--+.
T Consensus 349 ------~~~ddp-~~~ll~ea----i~nd~l-------k~~e---------------k~~ka~aek~i~ta~kiiapvi~ 395 (840)
T KOG2003|consen 349 ------KEKDDP-DDNLLNEA----IKNDHL-------KNME---------------KENKADAEKAIITAAKIIAPVIA 395 (840)
T ss_pred ------CCcCCc-chHHHHHH----HhhHHH-------HHHH---------------HhhhhhHHHHHHHHHHHhccccc
Confidence 000111 11111111 111100 0000 00000 111111122221122
Q ss_pred CChHH-HHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCCcee----eh
Q 001763 624 PNDIT-FTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPNPKSTVL----WT 698 (1017)
Q Consensus 624 p~~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~ 698 (1017)
||-.. +...+ +. +...-..|.....-..-+--|.++|+++.|.++++-... ++..+ -|
T Consensus 396 ~~fa~g~dwcl-------------e~---lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~-kdnk~~saaa~ 458 (840)
T KOG2003|consen 396 PDFAAGCDWCL-------------ES---LKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEK-KDNKTASAAAN 458 (840)
T ss_pred cchhcccHHHH-------------HH---HHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHh-ccchhhHHHhh
Confidence 22110 00000 00 000000011111112234457788888888887776655 22211 12
Q ss_pred hhh-hhccc-CCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHh
Q 001763 699 AVI-SGHAQ-NDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAK 776 (1017)
Q Consensus 699 ~li-~~~~~-~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~ 776 (1017)
.|- --|.+ ..++.+|..+-+..+... +-+......-.+.....|++++|.+.+...+..+-. -+.....++-.+.+
T Consensus 459 nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas-c~ealfniglt~e~ 536 (840)
T KOG2003|consen 459 NLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS-CTEALFNIGLTAEA 536 (840)
T ss_pred hhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH-HHHHHHHhcccHHH
Confidence 221 12333 335566666655554322 222333333334445678999999998888765443 34455556667889
Q ss_pred cCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHH
Q 001763 777 CGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQI 853 (1017)
Q Consensus 777 ~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~ 853 (1017)
.|++++|++.|-++.. .+.+.....+.+.|....+..+|++++.+... +.|+. ..+.-|...|-+.|+-.+|.++
T Consensus 537 ~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~ 614 (840)
T KOG2003|consen 537 LGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQC 614 (840)
T ss_pred hcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhh
Confidence 9999999999987654 33333778889999999999999999988776 66765 6778889999999999999887
Q ss_pred HHHhhhhcCCCc-CchhHHHHHHhhhccCCHHHHHHHHHhCC-CCCCHHHHHHHHHHH-HhcCCchHHHHHHHHHHhhCC
Q 001763 854 FETMVSCHGIQP-RVDHCACMVDLLGRWGFLKEAEEFIEQLT-FEPDSRIWTTLLGAC-GVHRDDIRGRLAAKKLIELEP 930 (1017)
Q Consensus 854 ~~~m~~~~~~~p-~~~~~~~l~~~l~~~g~~~eA~~~~~~~~-~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~l~~~p 930 (1017)
+-.- |..-| +.++...+..-|....-.++|+.++++.. ++|+..-|..++..| ++.|++.+|...|+..-...|
T Consensus 615 ~yds---yryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfp 691 (840)
T KOG2003|consen 615 HYDS---YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFP 691 (840)
T ss_pred hhhc---ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCc
Confidence 6543 44444 67888888888899999999999999974 799999999988665 578999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCC
Q 001763 931 ENPSPYVQLSNIYAALGN 948 (1017)
Q Consensus 931 ~~~~~~~~l~~~y~~~g~ 948 (1017)
+|..-+-.|-.+....|-
T Consensus 692 edldclkflvri~~dlgl 709 (840)
T KOG2003|consen 692 EDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cchHHHHHHHHHhccccc
Confidence 999888888777666664
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.60 E-value=1.6e-15 Score=160.28 Aligned_cols=253 Identities=16% Similarity=0.178 Sum_probs=105.6
Q ss_pred hcccCCCchHHHHHHHHHHHCCCCcCHHhH-HHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHH
Q 001763 703 GHAQNDSNYEALHFYREMRSHNVLPDQATF-VSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVK 781 (1017)
Q Consensus 703 ~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~ 781 (1017)
.+.+.|++++|++++++......+|+...| ..+...+...++.+.|...++.+...+.. ++..+..++.. ...|+++
T Consensus 17 ~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~ 94 (280)
T PF13429_consen 17 LLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPE 94 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccccc
Confidence 334444444444444333222112333222 22333444555666666666665555444 45556666666 5777888
Q ss_pred HHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCChHhHHHHHHHcccCCcHHHHHHHHHHhh
Q 001763 782 RSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQA-MPDDVTFLGVLTACSHAGRVSEGRQIFETMV 858 (1017)
Q Consensus 782 ~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 858 (1017)
+|.+++....+ ++.. .|..++..+...|+++++.++++++....- .++...|..+...+.+.|++++|++.|++.+
T Consensus 95 ~A~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 173 (280)
T PF13429_consen 95 EALKLAEKAYERDGDPR-YLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL 173 (280)
T ss_dssp ------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred ccccccccccccccccc-hhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88877766543 3333 667777778888888888888888775322 2344566777777888888888888888887
Q ss_pred hhcCCCcC-chhHHHHHHhhhccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCch
Q 001763 859 SCHGIQPR-VDHCACMVDLLGRWGFLKEAEEFIEQLT--FEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSP 935 (1017)
Q Consensus 859 ~~~~~~p~-~~~~~~l~~~l~~~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~ 935 (1017)
+ ..|+ ......++.++...|+.+++.++++... .+.|+..|..++.++...|+.+.|...++++++.+|+|+..
T Consensus 174 ~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~ 250 (280)
T PF13429_consen 174 E---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLW 250 (280)
T ss_dssp H---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred H---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccc
Confidence 7 4564 5567778888888888888777776642 24466689999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHH
Q 001763 936 YVQLSNIYAALGNWNEVNTLRREMRE 961 (1017)
Q Consensus 936 ~~~l~~~y~~~g~~~~a~~~~~~m~~ 961 (1017)
...+++++...|+.++|.+++++.-+
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999987643
No 37
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=9.2e-13 Score=135.14 Aligned_cols=214 Identities=14% Similarity=0.083 Sum_probs=137.6
Q ss_pred cCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHH
Q 001763 742 LSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVF 819 (1017)
Q Consensus 742 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 819 (1017)
.|+.-.+.+-++.+++..+. +...|.-+..+|....+-++-.+.|+.... |....+|..-...+.-.+++++|+.-|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555444 223355555555555555555555555443 222225555555555556666666666
Q ss_pred HHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC-CCCC
Q 001763 820 HEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL-TFEP 897 (1017)
Q Consensus 820 ~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p 897 (1017)
++.++ +.|+. ..|..+.-+..+.++++++...|+..+++ .+--++.|+....+|..++++++|.+.++.. .++|
T Consensus 418 ~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 418 QKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 66666 45644 45666665556666777777777776653 3334566666667777777777777766653 3344
Q ss_pred C---------HHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 001763 898 D---------SRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMRE 961 (1017)
Q Consensus 898 ~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 961 (1017)
+ +.+-.+++-.-+. +|+..|+.+.++++++||..-.+|..|+.+-.+.|+.++|++++++-..
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3 3334444433333 8999999999999999999999999999999999999999999986543
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=8.7e-14 Score=148.96 Aligned_cols=276 Identities=14% Similarity=0.110 Sum_probs=215.1
Q ss_pred ChHHHHHHHhhCCC-CCCceee--hhhhhhcccCCCchHHHHHHHHHHHCCCCc----CHHhHHHHHHHHhccCcHHHHH
Q 001763 677 RNTDARLLFTEFPN-PKSTVLW--TAVISGHAQNDSNYEALHFYREMRSHNVLP----DQATFVSVLRACAVLSSLRDGG 749 (1017)
Q Consensus 677 ~~~~A~~~~~~~~~-~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p----d~~t~~~ll~~~~~~~~~~~a~ 749 (1017)
+..+|...|...+. ..++. | ..++.+|...+++++|.++|+...+. .| +...|.+++- +..+.-+--
T Consensus 334 ~~~~A~~~~~klp~h~~nt~-wvl~q~GrayFEl~~Y~~a~~~F~~~r~~--~p~rv~~meiyST~LW---HLq~~v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTG-WVLSQLGRAYFELIEYDQAERIFSLVRRI--EPYRVKGMEIYSTTLW---HLQDEVALS 407 (638)
T ss_pred HHHHHHHHHHhhHHhcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccchhHHHHHHH---HHHhhHHHH
Confidence 45677777777554 23333 4 34677788888888888888887764 33 3345555543 222222212
Q ss_pred HHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCCh--hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 001763 750 EIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNY--VISWNSMIVGFAKNGYAEDALKVFHEMKETQA 827 (1017)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 827 (1017)
.+-+.+++..+. .+.+|.++++.|.-+++.+.|++.|++...-|. .-+|+.+..-+.....+|+|...|+..+. +
T Consensus 408 ~Laq~Li~~~~~-sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~ 484 (638)
T KOG1126|consen 408 YLAQDLIDTDPN-SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--V 484 (638)
T ss_pred HHHHHHHhhCCC-CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--C
Confidence 223344555554 789999999999999999999999999987444 34667777778888999999999999888 7
Q ss_pred CCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCc-hhHHHHHHhhhccCCHHHHHHHHHhC-CCCC-CHHHHH
Q 001763 828 MPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRV-DHCACMVDLLGRWGFLKEAEEFIEQL-TFEP-DSRIWT 903 (1017)
Q Consensus 828 ~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p-~~~~~~ 903 (1017)
.|.. ..|.+|+..|.++++++.|.-.|+++++ +.|.. ....++...+.+.|+.|+|++++++. ..+| |+..-.
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~ 561 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY 561 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH
Confidence 7887 5789999999999999999999999987 88864 45677888899999999999999986 4566 555555
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCC
Q 001763 904 TLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGV 964 (1017)
Q Consensus 904 ~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 964 (1017)
.-+..+...+++++|...+|.+-++-|+++..|.+++.+|-+.|+.+.|..-+..+.+...
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 5666677789999999999999999999999999999999999999999999988877644
No 39
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=2.3e-09 Score=119.12 Aligned_cols=673 Identities=13% Similarity=0.169 Sum_probs=357.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHhcCC--CCccchHHHHHHHhccCCc
Q 001763 227 SMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEARELFAQMQN--PNVVAWNVMISGHAKRGYD 304 (1017)
Q Consensus 227 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~ 304 (1017)
-.+.+|+..|.+++++-.. .+.|..||... +++...+ -..+.+.++...|.+ +...-++.+...+......
T Consensus 486 KVi~cfAE~Gqf~KiilY~---kKvGyTPdymf---lLq~l~r-~sPD~~~qFa~~l~Q~~~~~~die~I~DlFme~N~i 558 (1666)
T KOG0985|consen 486 KVIQCFAETGQFKKIILYA---KKVGYTPDYMF---LLQQLKR-SSPDQALQFAMMLVQDEEPLADIEQIVDLFMELNLI 558 (1666)
T ss_pred HHHHHHHHhcchhHHHHHH---HHcCCCccHHH---HHHHHHc-cChhHHHHHHHHhhccCCCcccHHHHHHHHHHHHhh
Confidence 3455666666666555443 34577777544 4444444 677888888777765 4455577777777777777
Q ss_pred hHHHHHHHHHHhcCCCCChhhHHHHHHHHhcccchhHHHHHHHHHHHhCCCCchhhhHHHHHHHHccCChhHHHHHHhhc
Q 001763 305 AEAVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFDSL 384 (1017)
Q Consensus 305 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 384 (1017)
+.+..++-...+. ..|+.....+-+---.-.+ |-++-+.++..+.- ..+-+..+.+.+.+.|-...|.+.+..+
T Consensus 559 Qq~TSFLLdaLK~-~~Pd~g~LQTrLLE~NL~~----aPqVADAILgN~mF-tHyDra~IAqLCEKAGL~qraLehytDl 632 (1666)
T KOG0985|consen 559 QQCTSFLLDALKL-NSPDEGHLQTRLLEMNLVH----APQVADAILGNDMF-THYDRAEIAQLCEKAGLLQRALEHYTDL 632 (1666)
T ss_pred hhhHHHHHHHhcC-CChhhhhHHHHHHHHHhcc----chHHHHHHHhcccc-ccccHHHHHHHHHhcchHHHHHHhcccH
Confidence 7777776665543 5555443332221111112 22333333333332 2223667788899999999999888876
Q ss_pred CC-CCcchHHHH-----HHHHHhCCChhHHHHHHHhhhhcCCCCChhcHHHHHHhhhcccchHhhHHHHHHHHH------
Q 001763 385 DE-RNAVLWNAL-----LGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIK------ 452 (1017)
Q Consensus 385 ~~-~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~------ 452 (1017)
.+ +.++..+.+ +..|.-.-.++++++.++.|...+++-|..+...+..-|+..-..+.-.++|+....
T Consensus 633 ~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~y 712 (1666)
T KOG0985|consen 633 YDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYY 712 (1666)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHH
Confidence 54 111111211 234555667889999999999888888876665555544433333333333333221
Q ss_pred -----hcCCchhhHHHHHHHHhhccCChhHHHHHHhhcCC---------------CC---------cccchhhhHHhHhc
Q 001763 453 -----NKLATNLYVGNALVDMYAKSRALEEARKQFERIQN---------------QD---------NVSWNAIIVGYVQE 503 (1017)
Q Consensus 453 -----~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---------------~~---------~~~~~~li~~~~~~ 503 (1017)
.++.-|+.+.-..|.+-++.|++.+.+++.++-.- .| ..-+-.=+..|.-.
T Consensus 713 fLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyr 792 (1666)
T KOG0985|consen 713 FLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYR 792 (1666)
T ss_pred HHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHH
Confidence 13455666777788999999999888887765321 11 11111112223333
Q ss_pred CCHHHHHHHHHHhhccCCCCCcccHHHH--------------------------HHHhhcccCCCcchhHHHHHhhhCCC
Q 001763 504 GDVFEAFNMFRRMNLVGIVPDDVSSASI--------------------------LSACANIQGLPQGEQVHCFSVKTSLE 557 (1017)
Q Consensus 504 g~~~~A~~~~~~m~~~g~~pd~~t~~~l--------------------------l~a~~~~~~~~~~~~i~~~~~~~~~~ 557 (1017)
++..+-+++|-+-..-+-.|- ....+ ..-+.+.+++..-....+..+..|..
T Consensus 793 nn~~kyIE~yVQkvNps~~p~--VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~ 870 (1666)
T KOG0985|consen 793 NNLQKYIEIYVQKVNPSRTPQ--VVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ 870 (1666)
T ss_pred hhHHHHHHHHHhhcCCcccch--hhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc
Confidence 334444444433222111110 11111 11111222222222223333333333
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHhcCCCCCchhHHHHHHHHhhCCch-HHHHHHHHHHHcCCCCChHHHHHHHHhc
Q 001763 558 TSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNVE-DAVVLYRGMQTEGLSPNDITFTSLLDAC 636 (1017)
Q Consensus 558 ~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~-~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 636 (1017)
++.++|+|...|..+++-.+ .+++ .|..-=+..+..||...++ -|.-.|++-+ -| .-++..|
T Consensus 871 --d~a~hnAlaKIyIDSNNnPE--~fLk----eN~yYDs~vVGkYCEKRDP~lA~vaYerGq-----cD----~elI~vc 933 (1666)
T KOG0985|consen 871 --DPATHNALAKIYIDSNNNPE--RFLK----ENPYYDSKVVGKYCEKRDPHLACVAYERGQ-----CD----LELINVC 933 (1666)
T ss_pred --chHHHhhhhheeecCCCChH--Hhcc----cCCcchhhHHhhhhcccCCceEEEeecccC-----Cc----HHHHHhc
Confidence 44444444444444332111 0111 1111111122223333222 2221111100 00 1122222
Q ss_pred cCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhh-----CCCCCCceeehhhhhhcccCCCch
Q 001763 637 DGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTE-----FPNPKSTVLWTAVISGHAQNDSNY 711 (1017)
Q Consensus 637 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~ 711 (1017)
.....+..-.++ +++ ..|...|....+ . ...--+.++++ +++..|+..-+.-..++...+-+.
T Consensus 934 NeNSlfK~~aRY---lv~----R~D~~LW~~VL~---e--~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~ 1001 (1666)
T KOG0985|consen 934 NENSLFKSQARY---LVE----RSDPDLWAKVLN---E--ENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPN 1001 (1666)
T ss_pred CchhHHHHHHHH---HHh----ccChHHHHHHHh---c--cChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcH
Confidence 221111110000 000 011111111110 0 00000111221 111233333444455566666666
Q ss_pred HHHHHHHHHHHCCCC-cCHHhHHH----------------------------HHHHHhccCcHHHHHHHHHHHHHhCCCC
Q 001763 712 EALHFYREMRSHNVL-PDQATFVS----------------------------VLRACAVLSSLRDGGEIHSLIFHTGYDL 762 (1017)
Q Consensus 712 ~A~~~~~~m~~~~~~-pd~~t~~~----------------------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 762 (1017)
+-++++++..-.+-. .....+.. +...+...+-+|+|..+|+.. ..
T Consensus 1002 eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf-----~~ 1076 (1666)
T KOG0985|consen 1002 ELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKF-----DM 1076 (1666)
T ss_pred HHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHh-----cc
Confidence 666666665432100 00011111 223344455566666665542 12
Q ss_pred CcchHhHHHhHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcc
Q 001763 763 DEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACS 842 (1017)
Q Consensus 763 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 842 (1017)
+......|++ .-|.++.|.+.-++..++. .|..++.+-.+.|...+|++-|-+. -|...|.-++.+++
T Consensus 1077 n~~A~~VLie---~i~~ldRA~efAe~~n~p~---vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~ 1144 (1666)
T KOG0985|consen 1077 NVSAIQVLIE---NIGSLDRAYEFAERCNEPA---VWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVAS 1144 (1666)
T ss_pred cHHHHHHHHH---HhhhHHHHHHHHHhhCChH---HHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHH
Confidence 3333333332 3456666766666554433 8999999999999999999887432 24578999999999
Q ss_pred cCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHH
Q 001763 843 HAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAA 922 (1017)
Q Consensus 843 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 922 (1017)
+.|.|++-.+++...++ ..-+|..+ +.++-+|.+.|++.|-++++. .|+..-....++-|...|.++.|+..|
T Consensus 1145 ~~~~~edLv~yL~MaRk-k~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1145 RTGKYEDLVKYLLMARK-KVREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred hcCcHHHHHHHHHHHHH-hhcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHH
Confidence 99999999998887776 44455544 568889999999999888875 577777888899999999999998887
Q ss_pred HHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCCccCCceeEEEE
Q 001763 923 KKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVKKFPGCSWIVL 975 (1017)
Q Consensus 923 ~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~g~s~i~~ 975 (1017)
. +.+.+-.|+..+...|+++.|...-++......-|..+.+.++-
T Consensus 1218 ~--------~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~ 1262 (1666)
T KOG0985|consen 1218 S--------NVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDK 1262 (1666)
T ss_pred H--------HhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhch
Confidence 6 55678889999999999999987766666555555555555443
No 40
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.53 E-value=4.8e-12 Score=127.97 Aligned_cols=291 Identities=12% Similarity=0.117 Sum_probs=212.6
Q ss_pred hhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHH--HHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCC
Q 001763 702 SGHAQNDSNYEALHFYREMRSHNVLPDQATFVSV--LRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGD 779 (1017)
Q Consensus 702 ~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~ 779 (1017)
.-|.++|+++.|+++++-+....-+.-...-+.| +.-..--.++..|.++.+..+..+-- ++.....-++.-...|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcCCceeeecCc
Confidence 3478899999999999888765433322222222 22222345677787777766543321 33344444556667899
Q ss_pred HHHHHHHHHhccCCChhH--HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHh
Q 001763 780 VKRSAQVFDEMAERNYVI--SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETM 857 (1017)
Q Consensus 780 ~~~A~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 857 (1017)
+++|.+.+++....+..+ ....+.-.+...|+.++|++.|-++-.. +..+...+..+.+.|....+..+|++++-+.
T Consensus 506 ~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 999999999999877662 3455666788899999999999887653 2335577888999999999999999999888
Q ss_pred hhhcCCCcCchhHHHHHHhhhccCCHHHHHHHH-HhCCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCch
Q 001763 858 VSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFI-EQLTFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSP 935 (1017)
Q Consensus 858 ~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~-~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~ 935 (1017)
.. -++.++...+.+.++|-+.|+..+|.+.. +....-| +..+...|..-|....=.+.++..++++--+.|.-+.-
T Consensus 585 ~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kw 662 (840)
T KOG2003|consen 585 NS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKW 662 (840)
T ss_pred cc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHH
Confidence 66 24446788999999999999999999885 4444334 44455556666666667799999999999999988888
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHcCCccCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHH
Q 001763 936 YVQLSNIYAALGNWNEVNTLRREMREKGVKKFPGCSWIVLGQNTNFFVAGDTSHPNADRICAVLEDLT 1003 (1017)
Q Consensus 936 ~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~g~s~i~~~~~~~~f~~~d~~~~~~~~~~~~l~~l~ 1003 (1017)
-...+..+.+.|+|++|..+++.+..+=.+. -.|-...+. +.||..-...+|+-.+|++++
T Consensus 663 qlmiasc~rrsgnyqka~d~yk~~hrkfped-ldclkflvr------i~~dlgl~d~key~~klek~e 723 (840)
T KOG2003|consen 663 QLMIASCFRRSGNYQKAFDLYKDIHRKFPED-LDCLKFLVR------IAGDLGLKDAKEYADKLEKAE 723 (840)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCccc-hHHHHHHHH------HhccccchhHHHHHHHHHHHH
Confidence 8899999999999999999999887542221 122211111 567888888899988888765
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=1.1e-12 Score=140.64 Aligned_cols=246 Identities=17% Similarity=0.110 Sum_probs=197.4
Q ss_pred CchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCC--CCcchHhHHHhHHHhcCCHH-HHHH
Q 001763 709 SNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYD--LDEITGSALIDMYAKCGDVK-RSAQ 785 (1017)
Q Consensus 709 ~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~y~~~g~~~-~A~~ 785 (1017)
+..+|+.+|.+...+ +.-.......+..+|...+++++++.+|+.+.+..+- -+..+|.+.+-.+-+.=.+. -|.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 457999999996554 2333466677888999999999999999999876542 26677777664443221111 1333
Q ss_pred HHHhccCCChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCC
Q 001763 786 VFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQ 864 (1017)
Q Consensus 786 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 864 (1017)
+.+.. ++...+|-+++++|.-+++.+.|++.|++.++ ++|+. .+|+.++.-+.....+|.|...|+..+.
T Consensus 413 Li~~~--~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----- 483 (638)
T KOG1126|consen 413 LIDTD--PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG----- 483 (638)
T ss_pred HHhhC--CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----
Confidence 33332 33334999999999999999999999999999 77854 7888888888889999999999998754
Q ss_pred cCchhHHHH---HHhhhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHH
Q 001763 865 PRVDHCACM---VDLLGRWGFLKEAEEFIEQL-TFEPD-SRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQL 939 (1017)
Q Consensus 865 p~~~~~~~l---~~~l~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l 939 (1017)
.++.||+.+ .-.|.+.++++.|+-.|++. .++|. .++...++..+.+.|+.|+|...+++++-++|.|+-.-+..
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 566666654 56799999999999999986 68885 55677777889899999999999999999999999999999
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHcCC
Q 001763 940 SNIYAALGNWNEVNTLRREMREKGV 964 (1017)
Q Consensus 940 ~~~y~~~g~~~~a~~~~~~m~~~~~ 964 (1017)
+.++...+++++|.+.++++++--.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP 588 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVP 588 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCc
Confidence 9999999999999999999998644
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.49 E-value=7.2e-12 Score=138.45 Aligned_cols=277 Identities=12% Similarity=0.062 Sum_probs=206.1
Q ss_pred cCChHHHHHHHhhCCCC-CCceeehhh-hhhcccCCCchHHHHHHHHHHHCCCCcCHHhHH--HHHHHHhccCcHHHHHH
Q 001763 675 SKRNTDARLLFTEFPNP-KSTVLWTAV-ISGHAQNDSNYEALHFYREMRSHNVLPDQATFV--SVLRACAVLSSLRDGGE 750 (1017)
Q Consensus 675 ~g~~~~A~~~~~~~~~~-~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~--~ll~~~~~~~~~~~a~~ 750 (1017)
.|+++.|++.....+.. +++..+..+ .....+.|++++|...+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 58888888777765541 122222222 33347789999999999999874 56653332 33567888999999999
Q ss_pred HHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCChh----------HHHHHHHHHHHhCCCHHHHHHHHH
Q 001763 751 IHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYV----------ISWNSMIVGFAKNGYAEDALKVFH 820 (1017)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~----------~~~~~l~~~~~~~g~~~~A~~~~~ 820 (1017)
.++.+.+..|. ++.+...+..+|.+.|+|++|.+++..+.+.... ..|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999999887 7889999999999999999999999988863221 133344444444455566666666
Q ss_pred HHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC-CCCCC-
Q 001763 821 EMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL-TFEPD- 898 (1017)
Q Consensus 821 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~- 898 (1017)
++.+. .+.+......+..++...|+.++|.+.+++..+ ..|+.... ++......|+.+++.+.+++. ...|+
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66442 223446778889999999999999999999876 34544322 223334569999999999886 45664
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 001763 899 SRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMRE 961 (1017)
Q Consensus 899 ~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 961 (1017)
+..+.+++..|...+++++|+..++++++.+|++ ..+..|+.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5567788899999999999999999999999965 5678999999999999999999986644
No 43
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.49 E-value=1.1e-08 Score=110.14 Aligned_cols=191 Identities=14% Similarity=0.093 Sum_probs=103.8
Q ss_pred HHHHhhccCChhHHHHHHhhcCCCCcccchhhhHHhHhcCCHHHHHHHHHHhhccCCCCCcccHHHHHHHhhcccCCCcc
Q 001763 465 LVDMYAKSRALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQG 544 (1017)
Q Consensus 465 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~ 544 (1017)
-..-+-+.|++.+|.+++-.+..|+. .|..|-+.|..++.+++..+-...-+ ..|-..+-.-+...|++..+
T Consensus 830 kaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l---~dt~~~f~~e~e~~g~lkaa 901 (1636)
T KOG3616|consen 830 KAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHL---HDTHKHFAKELEAEGDLKAA 901 (1636)
T ss_pred hHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChhhh---hHHHHHHHHHHHhccChhHH
Confidence 33334456666666666665555542 35556666666666666554321111 12223333444455566555
Q ss_pred hhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCCCCCchhHHHHHHHHhh-CCchHHHHHHHHH--HHcC
Q 001763 545 EQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQ-NNVEDAVVLYRGM--QTEG 621 (1017)
Q Consensus 545 ~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~-~~~~~A~~l~~~m--~~~g 621 (1017)
+.-|-. ..-+.+-++||-.++.|++|.++-+.-...|..-.-.. ..++ -|-+.|++++++. ...
T Consensus 902 e~~fle----------a~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~f--lwaksiggdaavkllnk~gll~~- 968 (1636)
T KOG3616|consen 902 EEHFLE----------AGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAF--LWAKSIGGDAAVKLLNKHGLLEA- 968 (1636)
T ss_pred HHHHHh----------hhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHH--HHHHhhCcHHHHHHHHhhhhHHH-
Confidence 544432 23366778899999999999988765443332211111 1111 1222455555442 221
Q ss_pred CCCChHHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCC
Q 001763 622 LSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPN 690 (1017)
Q Consensus 622 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 690 (1017)
.++-.+..+.++-|..+-....+. .-..++..++..+...|++++|.+.+-+..+
T Consensus 969 ----------~id~a~d~~afd~afdlari~~k~----k~~~vhlk~a~~ledegk~edaskhyveaik 1023 (1636)
T KOG3616|consen 969 ----------AIDFAADNCAFDFAFDLARIAAKD----KMGEVHLKLAMFLEDEGKFEDASKHYVEAIK 1023 (1636)
T ss_pred ----------HhhhhhcccchhhHHHHHHHhhhc----cCccchhHHhhhhhhccchhhhhHhhHHHhh
Confidence 122223445556665555544443 3346677788888899999999888877655
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.5e-11 Score=125.68 Aligned_cols=248 Identities=13% Similarity=0.150 Sum_probs=190.2
Q ss_pred hcccCCCchHHHHHHHHHHHCCC-C-cCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCH
Q 001763 703 GHAQNDSNYEALHFYREMRSHNV-L-PDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDV 780 (1017)
Q Consensus 703 ~~~~~g~~~~A~~~~~~m~~~~~-~-pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~ 780 (1017)
+.....++++|+..|++...... + -|..+|..++-+-.....+.---+....+-+ -.+.+...+++-|.-.++.
T Consensus 271 ~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idK----yR~ETCCiIaNYYSlr~eH 346 (559)
T KOG1155|consen 271 ASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDK----YRPETCCIIANYYSLRSEH 346 (559)
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhcc----CCccceeeehhHHHHHHhH
Confidence 34445666777777777766421 1 1456676666443322222111111112222 2456788889999999999
Q ss_pred HHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHh
Q 001763 781 KRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETM 857 (1017)
Q Consensus 781 ~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m 857 (1017)
++|...|++..+ |+....|+.|+.-|..-.+...|++-++.+++ +.|-. ..|.+|+.+|.-.+...=|+-+|++.
T Consensus 347 EKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA 424 (559)
T KOG1155|consen 347 EKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKA 424 (559)
T ss_pred HHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHH
Confidence 999999999887 44456899999999999999999999999999 67744 78999999999999999999999999
Q ss_pred hhhcCCCcC-chhHHHHHHhhhccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHh-------
Q 001763 858 VSCHGIQPR-VDHCACMVDLLGRWGFLKEAEEFIEQLT--FEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIE------- 927 (1017)
Q Consensus 858 ~~~~~~~p~-~~~~~~l~~~l~~~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~------- 927 (1017)
.+ ++|+ ...+..|+++|.+.++.+||++.+.+.- .+.+..++..|+..+...++.++|...+++-++
T Consensus 425 ~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~ 501 (559)
T KOG1155|consen 425 LE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGE 501 (559)
T ss_pred Hh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc
Confidence 87 6775 5689999999999999999999998863 344557888899999999999999999999988
Q ss_pred hCCCCCchHHHHHHHHHhcCCcHHHHHHHHHH
Q 001763 928 LEPENPSPYVQLSNIYAALGNWNEVNTLRREM 959 (1017)
Q Consensus 928 ~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 959 (1017)
.+|+-..+..-|++-+.+.++|++|.......
T Consensus 502 ~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 502 IDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred cchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 45666677788999999999999998866543
No 45
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=5e-11 Score=125.28 Aligned_cols=279 Identities=10% Similarity=0.016 Sum_probs=179.0
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHhhCCC--CCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 001763 660 DDDFLHIALLSMYMNSKRNTDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLR 737 (1017)
Q Consensus 660 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~ 737 (1017)
.++.+....++-+...+++.+-.++++.+.+ |.....+..-|.++...|+..+-..+=.+|.+. .+-..++|.++.-
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 6677777788888888888888888887766 455555555566777777777777777777664 2333567777776
Q ss_pred HHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHH
Q 001763 738 ACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDA 815 (1017)
Q Consensus 738 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 815 (1017)
-|...|+..+|++.+.+....++. -...|...+..|+-.|.-|+|+..+....+ ++.-...--+..-|.+.++.+-|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHH
Confidence 666667777777777776655554 345677777777777777777777665543 33221223344456666777777
Q ss_pred HHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhc-CCCc----CchhHHHHHHhhhccCCHHHHHHH
Q 001763 816 LKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCH-GIQP----RVDHCACMVDLLGRWGFLKEAEEF 889 (1017)
Q Consensus 816 ~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~~p----~~~~~~~l~~~l~~~g~~~eA~~~ 889 (1017)
.+.|.+... +.|+. ..+.-++-...+.+.+.+|..+|+..+..- .+.+ ....+++++-+|.+.+++++|+..
T Consensus 400 e~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 400 EKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 777777666 55644 444445444556777777777777765311 0111 122356666677777777777777
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHH
Q 001763 890 IEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNI 942 (1017)
Q Consensus 890 ~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~ 942 (1017)
+++. ...| |..++.+++-.+...|+++.|+..+.+++-++|+|..+-..|+..
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 7664 3333 555666666666677777777777777777777776555555533
No 46
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=8.2e-11 Score=123.66 Aligned_cols=485 Identities=11% Similarity=0.052 Sum_probs=278.4
Q ss_pred HHHHHhcccchhHHHHHHHHHHHhCCCCchhhhHHHHHHHHccCChhHHHHHHhh--cCCCCcchHHHHHHHHHhCCChh
Q 001763 329 VLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFDS--LDERNAVLWNALLGGYSQNCYAH 406 (1017)
Q Consensus 329 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~li~~~~~~g~~~ 406 (1017)
+++-+.....+..|.-+-+.+...+. |+.-.--+.++|.-.|+++.|..+... +.+.|..+.......+.+..+++
T Consensus 22 ~~r~~l~q~~y~~a~f~adkV~~l~~--dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~ 99 (611)
T KOG1173|consen 22 LVRDALMQHRYKTALFWADKVAGLTN--DPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWD 99 (611)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhccC--ChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33333344445555555555555553 444444567888888888888777754 55678888888888999999999
Q ss_pred HHHHHHHhhhhcCCCCChhcHHHHHHhhhcccchHhhHHHHHHHHHhcCCchhhHHHHHHHHhhccCChhHHHHHHhhcC
Q 001763 407 EVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQ 486 (1017)
Q Consensus 407 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 486 (1017)
+|+.++..-. +.-+...+-.--. +..-..+.+...+..-.+.++ +-.=-..|....+.++|+..|.+..
T Consensus 100 ~al~vl~~~~---~~~~~f~yy~~~~--~~~l~~n~~~~~~~~~~essi------c~lRgk~y~al~n~~~ar~~Y~~Al 168 (611)
T KOG1173|consen 100 QALLVLGRGH---VETNPFSYYEKDA--ANTLELNSAGEDLMINLESSI------CYLRGKVYVALDNREEARDKYKEAL 168 (611)
T ss_pred HHHHHhcccc---hhhcchhhcchhh--hceeccCcccccccccchhce------eeeeeehhhhhccHHHHHHHHHHHH
Confidence 9999887321 1111111100000 000000011100000000000 0000012333455666666666655
Q ss_pred CCCcccchhhhHHhHhcC-CHHHHHHHHHHhhcc-CCCCCcccHHHHHHHhh-cccCCCcchhHHHHHhhhCCCCCchHH
Q 001763 487 NQDNVSWNAIIVGYVQEG-DVFEAFNMFRRMNLV-GIVPDDVSSASILSACA-NIQGLPQGEQVHCFSVKTSLETSNIYV 563 (1017)
Q Consensus 487 ~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~-g~~pd~~t~~~ll~a~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~ 563 (1017)
..|...+..+..--..+= -..+-.++|+.+--. -..-+......+..... +..+-+.... -....-.++.. ++.+
T Consensus 169 ~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r-~~~~sl~~l~~-~~dl 246 (611)
T KOG1173|consen 169 LADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTR-NEDESLIGLAE-NLDL 246 (611)
T ss_pred hcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcccccccc-Cchhhhhhhhh-cHHH
Confidence 544444333221110000 001111122110000 00111111111211110 0000000000 00011122233 6677
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhcCCCCCch---hHHHHHHHHhhCCch-HHHHHHHHHHHcCCCCChHHHHHHHHhccCC
Q 001763 564 GSSLIDMYVKCGFIGAAHKVLSCMPQRNVV---SMNALIAGYAQNNVE-DAVVLYRGMQTEGLSPNDITFTSLLDACDGP 639 (1017)
Q Consensus 564 ~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~-~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 639 (1017)
..+..+-+...+++.+..++++...+.|+. .+..-|..+...|.. +-..+=.+|.+
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~-------------------- 306 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVD-------------------- 306 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHH--------------------
Confidence 777788888888888888888887765443 222223334444444 44444444433
Q ss_pred CccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCC--CCCceeehhhhhhcccCCCchHHHHHH
Q 001763 640 YKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYEALHFY 717 (1017)
Q Consensus 640 ~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~ 717 (1017)
.- |..+..+.+++-.|.-.|+..+|++.|.+... +.--..|-.++..|+-.|+.++|+..|
T Consensus 307 ---------------~y--P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY 369 (611)
T KOG1173|consen 307 ---------------LY--PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAY 369 (611)
T ss_pred ---------------hC--CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHH
Confidence 33 67778888888888888999999999987665 445578999999999999999999998
Q ss_pred HHHHHCCCCcC-HHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC----
Q 001763 718 REMRSHNVLPD-QATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE---- 792 (1017)
Q Consensus 718 ~~m~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---- 792 (1017)
...-+. -|. ..-+.-+.--|...++++.|.+.|.++....|. |+.+.+-++-+....+.+.+|...|.....
T Consensus 370 ~tAarl--~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~ 446 (611)
T KOG1173|consen 370 FTAARL--MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKS 446 (611)
T ss_pred HHHHHh--ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhh
Confidence 887653 121 111222334577789999999999998888776 888999999888888999999999886652
Q ss_pred CC-----hhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-ChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcC
Q 001763 793 RN-----YVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMP-DDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPR 866 (1017)
Q Consensus 793 ~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~ 866 (1017)
.+ ..++|+.++.+|.+.+++++|+..|++.+. ..| |..++.+++-.|...|+++.|++.|.+.+. +.|+
T Consensus 447 ~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~---l~p~ 521 (611)
T KOG1173|consen 447 VLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA---LKPD 521 (611)
T ss_pred ccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh---cCCc
Confidence 11 123577888888888888888888888888 445 446777788788888888888888888765 6676
Q ss_pred chhHHHH
Q 001763 867 VDHCACM 873 (1017)
Q Consensus 867 ~~~~~~l 873 (1017)
...-..+
T Consensus 522 n~~~~~l 528 (611)
T KOG1173|consen 522 NIFISEL 528 (611)
T ss_pred cHHHHHH
Confidence 5544433
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.46 E-value=1.8e-11 Score=136.14 Aligned_cols=281 Identities=10% Similarity=0.051 Sum_probs=191.4
Q ss_pred HHhcCChHHHHHHHhhCCC-CCC-ceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHH--hHHHHHHHHhccCcHHH
Q 001763 672 YMNSKRNTDARLLFTEFPN-PKS-TVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQA--TFVSVLRACAVLSSLRD 747 (1017)
Q Consensus 672 ~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~--t~~~ll~~~~~~~~~~~ 747 (1017)
-...|+++.|.+.+.+..+ .++ ...+-.....+.+.|++++|.+.+.+..+. .|+.. .-......+...|+++.
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHH
Confidence 3456777777777766554 122 222333345566678888888888887654 34432 23334666777888888
Q ss_pred HHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCChh--HHHH----HHHHHHHhCCCHHHHHHHHHH
Q 001763 748 GGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYV--ISWN----SMIVGFAKNGYAEDALKVFHE 821 (1017)
Q Consensus 748 a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~--~~~~----~l~~~~~~~g~~~~A~~~~~~ 821 (1017)
|...++.+.+..|. ++.+...+..+|...|++++|.+.+....+.+.. ..+. ....+....+..+++.+.+.+
T Consensus 172 Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 172 ARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88888888888876 7778888888999999999999888887753221 0111 111222333444444556666
Q ss_pred HHHCCCCC-----ChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchh---HHHHHHhhhccCCHHHHHHHHHhC
Q 001763 822 MKETQAMP-----DDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDH---CACMVDLLGRWGFLKEAEEFIEQL 893 (1017)
Q Consensus 822 m~~~g~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~---~~~l~~~l~~~g~~~eA~~~~~~~ 893 (1017)
+.+. .| +...+..+...+...|+.++|.+.+++..+ ..|+... .....-.....++.+++++.+++.
T Consensus 251 ~~~~--~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~---~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~ 325 (409)
T TIGR00540 251 WWKN--QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK---KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQ 325 (409)
T ss_pred HHHH--CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh---hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHH
Confidence 6653 24 446677788888899999999999999887 3444332 122222234457788888888774
Q ss_pred -CCCC-CH--HHHHHHHHHHHhcCCchHHHHHHH--HHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 001763 894 -TFEP-DS--RIWTTLLGACGVHRDDIRGRLAAK--KLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMRE 961 (1017)
Q Consensus 894 -~~~p-~~--~~~~~ll~~~~~~g~~~~a~~~~~--~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 961 (1017)
...| |+ ....++++.|...|++++|...++ ++++..|++. .+..|+.++.+.|+.++|.++|++-.+
T Consensus 326 lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 326 AKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445 34 567788899999999999999999 5888888554 477999999999999999999987543
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=4.5e-10 Score=115.06 Aligned_cols=275 Identities=11% Similarity=0.070 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHH-HHHhcCC--hHH-HHHH
Q 001763 609 DAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLS-MYMNSKR--NTD-ARLL 684 (1017)
Q Consensus 609 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~-~~~~~g~--~~~-A~~~ 684 (1017)
++++-.+.....|+.-+...-+....+.-...|+++|..+|+.+++.. |-...-.....+ +|.+..+ +.- |..+
T Consensus 245 e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD--PYRl~dmdlySN~LYv~~~~skLs~LA~~v 322 (559)
T KOG1155|consen 245 EALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND--PYRLDDMDLYSNVLYVKNDKSKLSYLAQNV 322 (559)
T ss_pred HHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC--CCcchhHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 666666666666655444433333333445567777777777777664 322222222222 2233221 111 2222
Q ss_pred HhhCCCCCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcC-HHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCC
Q 001763 685 FTEFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPD-QATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLD 763 (1017)
Q Consensus 685 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 763 (1017)
+ .+.+ -.+.|...++.-|.-.++.++|+..|++.++. .|. ...|+-+..-+...++...|.+.+..+++.++. |
T Consensus 323 ~-~idK-yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-D 397 (559)
T KOG1155|consen 323 S-NIDK-YRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-D 397 (559)
T ss_pred H-Hhcc-CCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-h
Confidence 1 1222 23445556666666777777777777777764 343 344555556677777777777777777777665 6
Q ss_pred cchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHc
Q 001763 764 EITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTAC 841 (1017)
Q Consensus 764 ~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 841 (1017)
-..|..|+.+|.-.+...=|.-.|++... |+....|.+|+.+|.+.++.++|++.|......| +.+...+..|+..|
T Consensus 398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLy 476 (559)
T KOG1155|consen 398 YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLY 476 (559)
T ss_pred HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHH
Confidence 77777777777777777777777776654 4444477777777777777777777777777654 22346677777777
Q ss_pred ccCCcHHHHHHHHHHhhhhc---C-CCcC-chhHHHHHHhhhccCCHHHHHHHHH
Q 001763 842 SHAGRVSEGRQIFETMVSCH---G-IQPR-VDHCACMVDLLGRWGFLKEAEEFIE 891 (1017)
Q Consensus 842 ~~~g~~~~a~~~~~~m~~~~---~-~~p~-~~~~~~l~~~l~~~g~~~eA~~~~~ 891 (1017)
.+.++.++|...|++.++.. | +.|+ ...-.-|..-+-+.+++++|.....
T Consensus 477 e~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 477 EELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 77777777777777766532 1 1221 1222223444556666666655443
No 49
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=4.5e-10 Score=113.12 Aligned_cols=370 Identities=9% Similarity=0.039 Sum_probs=267.4
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHhcCCCC-CchhHHHHHHHHhhCCc-h-H--------------HHHHHHHHHHcCC
Q 001763 560 NIYVGSSLIDMYVKCGFIGAAHKVLSCMPQR-NVVSMNALIAGYAQNNV-E-D--------------AVVLYRGMQTEGL 622 (1017)
Q Consensus 560 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~-~-~--------------A~~l~~~m~~~g~ 622 (1017)
+.....-.+..|-..|+-+.|.....+.+.. ....-|.|+.-+.++|. . + |++.+.-..+.++
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v 175 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGV 175 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhh
Confidence 6667777888899999999999998888753 33344444443333321 1 2 2233333333333
Q ss_pred CC--------------ChHHHHHH-HH--hccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHH
Q 001763 623 SP--------------NDITFTSL-LD--ACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLF 685 (1017)
Q Consensus 623 ~p--------------~~~t~~~l-l~--a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 685 (1017)
+. +..-|.++ +. |.+..++...+.+.+-.+.....-|.+......++++|...|+..+|+..|
T Consensus 176 ~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~F 255 (564)
T KOG1174|consen 176 NGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIF 255 (564)
T ss_pred cchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHH
Confidence 22 22222222 22 334455666666666666666555789999999999999999999999999
Q ss_pred hhCCC--CCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCC
Q 001763 686 TEFPN--PKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLD 763 (1017)
Q Consensus 686 ~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 763 (1017)
++... |.++.........+.+.|+.++-..+...+.... +-...-|..-+......++++.|..+-++.++.++. +
T Consensus 256 e~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~ 333 (564)
T KOG1174|consen 256 SSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-N 333 (564)
T ss_pred HHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-c
Confidence 98765 3333343444555678899998888888876532 122333444445556778999999999999988876 7
Q ss_pred cchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHH-H
Q 001763 764 EITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVL-T 839 (1017)
Q Consensus 764 ~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~-~ 839 (1017)
...+..-+.++...|+.++|.-.|..... |....+|.-++.+|...|++.||..+-++.... -|+. .++..++ .
T Consensus 334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~ 411 (564)
T KOG1174|consen 334 HEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTL 411 (564)
T ss_pred chHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcce
Confidence 77888888999999999999999997665 434459999999999999999999998887773 4544 4554443 3
Q ss_pred Hcc-cCCcHHHHHHHHHHhhhhcCCCcCch-hHHHHHHhhhccCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCch
Q 001763 840 ACS-HAGRVSEGRQIFETMVSCHGIQPRVD-HCACMVDLLGRWGFLKEAEEFIEQL-TFEPDSRIWTTLLGACGVHRDDI 916 (1017)
Q Consensus 840 ~~~-~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~ 916 (1017)
.|. ..-.-++|.+++++-++ +.|+.. ....+..++.+.|+.++++.++++. ...||......|+......+...
T Consensus 412 V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q 488 (564)
T KOG1174|consen 412 VLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQ 488 (564)
T ss_pred eeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHH
Confidence 343 33345789999998776 788754 5667788999999999999999985 67899999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCchH
Q 001763 917 RGRLAAKKLIELEPENPSPY 936 (1017)
Q Consensus 917 ~a~~~~~~~l~~~p~~~~~~ 936 (1017)
+|...|.+++.++|+|-.+.
T Consensus 489 ~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 489 KAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred HHHHHHHHHHhcCccchHHH
Confidence 99999999999999765443
No 50
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.42 E-value=3.8e-11 Score=132.74 Aligned_cols=226 Identities=12% Similarity=0.055 Sum_probs=108.7
Q ss_pred HHHHHhcCChHHHHHHHhhCCC--CCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHH
Q 001763 669 LSMYMNSKRNTDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLR 746 (1017)
Q Consensus 669 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~ 746 (1017)
+..+...|+++.|...++...+ |.+......+...|.+.|++++|++++.++.+.+..++.. ...+-
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~-~~~l~---------- 228 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH-RAMLE---------- 228 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH-HHHHH----------
Confidence 5566666666666666665544 4455555556666666666666666666666554332110 00000
Q ss_pred HHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 001763 747 DGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKE 824 (1017)
Q Consensus 747 ~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 824 (1017)
..++..++....+..+.+...++++.++. ++....+..++..+...|+.++|.+++++.++
T Consensus 229 -----------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~ 291 (398)
T PRK10747 229 -----------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK 291 (398)
T ss_pred -----------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 00111122222222233444444444432 22222445555555555555555555555555
Q ss_pred CCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC-CCCCCHHHHH
Q 001763 825 TQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL-TFEPDSRIWT 903 (1017)
Q Consensus 825 ~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~~~~~~ 903 (1017)
. .||... .++.+....|+.+++++..+...+.+ +-++..+.++..++.+.|++++|.+.+++. ...|+...+.
T Consensus 292 ~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~--P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~ 365 (398)
T PRK10747 292 R--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH--GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYA 365 (398)
T ss_pred c--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHH
Confidence 2 222211 11222223355555555555555421 122333445555555555555555555553 3456655555
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhh
Q 001763 904 TLLGACGVHRDDIRGRLAAKKLIEL 928 (1017)
Q Consensus 904 ~ll~~~~~~g~~~~a~~~~~~~l~~ 928 (1017)
.|..++...|+.++|...+++.+.+
T Consensus 366 ~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 366 WLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5556666666666666666666554
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.41 E-value=7.6e-13 Score=139.82 Aligned_cols=255 Identities=13% Similarity=0.185 Sum_probs=106.9
Q ss_pred HHHHHHHHhcCChHHHHHHHhhC-CC---CCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhc
Q 001763 666 IALLSMYMNSKRNTDARLLFTEF-PN---PKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAV 741 (1017)
Q Consensus 666 ~~l~~~~~~~g~~~~A~~~~~~~-~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~ 741 (1017)
..++.++.+.|++++|.+++++. .. +.+...|..+.......++.++|+..++++...+.. +...+..++.. ..
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cc
Confidence 46688888889999999988542 22 356667777777777888999999999998875422 33445555555 68
Q ss_pred cCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC----CChhHHHHHHHHHHHhCCCHHHHHH
Q 001763 742 LSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE----RNYVISWNSMIVGFAKNGYAEDALK 817 (1017)
Q Consensus 742 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~ 817 (1017)
.+++++|..+.....+.. +++..+..++..|.+.|+++++.++++++.. ++....|..++..+.+.|+.++|++
T Consensus 90 ~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 889999998887765544 3566777888899999999999999988553 2223378889999999999999999
Q ss_pred HHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC-CC
Q 001763 818 VFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL-TF 895 (1017)
Q Consensus 818 ~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~ 895 (1017)
.+++.++ ..|+. .....++..+...|+.+++.++++...+. .+.++..+..+..+|...|+.++|...+++. ..
T Consensus 168 ~~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 168 DYRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhccccccccccccccccccc
Confidence 9999999 57875 56778888999999999999999888773 2556677888999999999999999999986 34
Q ss_pred CC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhh
Q 001763 896 EP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIEL 928 (1017)
Q Consensus 896 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~ 928 (1017)
.| |+.+...++.++...|+.++|..+.+++++.
T Consensus 244 ~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 244 NPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp STT-HHHHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccccccccccc
Confidence 55 6667788889999999999999999988764
No 52
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.40 E-value=1.4e-07 Score=101.71 Aligned_cols=644 Identities=13% Similarity=0.088 Sum_probs=312.4
Q ss_pred CchhHHHhhhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHhcCC
Q 001763 206 NVSDARRVFDGAVDLDTVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEARELFAQMQN 285 (1017)
Q Consensus 206 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 285 (1017)
++.+|..+|-+-.. -...|..|....+|++|+.+-+. .|.+.-...-.+-++++...|+-++|-++ +.
T Consensus 546 kfk~ae~ifleqn~-----te~aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~el----k~ 613 (1636)
T KOG3616|consen 546 KFKEAEMIFLEQNA-----TEEAIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAEL----KE 613 (1636)
T ss_pred hhhHHHHHHHhccc-----HHHHHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhh----cc
Confidence 56677777643211 23345566666777777766432 23222222233444555556666665543 22
Q ss_pred CCccchHHHHHHHhccCCchHHHHHHHHHHhcCCCCChhhHHHHHHHHhcccchhHHHHHHHHHHHhCCCCchhhhHHHH
Q 001763 286 PNVVAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLI 365 (1017)
Q Consensus 286 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 365 (1017)
.+-.+ -+-|..|.+.|.+-.|......=.. +..|......+..++.+..-+++|-.+|+.+.. +..-+
T Consensus 614 sdgd~-laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkal 681 (1636)
T KOG3616|consen 614 SDGDG-LAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKAL 681 (1636)
T ss_pred ccCcc-HHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHH
Confidence 22222 2345667777777666654322111 223333333333333333333333333322211 00111
Q ss_pred HHHHccCChhHHHHHHhhcCCCCcch-HHHHHHHHHhCCChhHHHHHHHhhhhcCCCCChhcHHHHHHhhhcccchHhhH
Q 001763 366 NMYAKCEKMESAKKVFDSLDERNAVL-WNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGR 444 (1017)
Q Consensus 366 ~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 444 (1017)
.+|-+-.-+.+|.++-+-.-...++. =..-..-+.+.|+++.|+.-|-+... ....+.+......+.+|.
T Consensus 682 e~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai 752 (1636)
T KOG3616|consen 682 ECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAI 752 (1636)
T ss_pred HHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhH
Confidence 22222222222222222111111111 11122333445555555554443221 112233334455666666
Q ss_pred HHHHHHHHhcCCchhhHHHHHHHHhhccCChhHHHHHHhhcCCCCcccchhhhHHhHhcCCHHHHHHHHHHhhccCCCCC
Q 001763 445 QLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPD 524 (1017)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 524 (1017)
.+++.+.+.... ..-|.-+.+.|+..|+++.|.++|-+.. .++-.|..|.++|++++|.++-.+... |.
T Consensus 753 ~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~~----~e 821 (1636)
T KOG3616|consen 753 SILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECHG----PE 821 (1636)
T ss_pred hHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhcC----ch
Confidence 666666554321 1224455666777777777777776532 355566777777777777766554321 21
Q ss_pred cccHHHHHHHhhcccCCCcchhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCCCCCchhHHHHHHHHhh
Q 001763 525 DVSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQ 604 (1017)
Q Consensus 525 ~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 604 (1017)
. ....|-+-..-.-+.|++.+|.+++-.+..|+. -|..|-+
T Consensus 822 ~----------------------------------t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk 862 (1636)
T KOG3616|consen 822 A----------------------------------TISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDK 862 (1636)
T ss_pred h----------------------------------HHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHh
Confidence 1 333444444555566777777777766655542 3455666
Q ss_pred CCch-HHHHHHHHHHHcCCCCCh--HHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHH
Q 001763 605 NNVE-DAVVLYRGMQTEGLSPND--ITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDA 681 (1017)
Q Consensus 605 ~~~~-~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 681 (1017)
+|.. +.+++..+- .||. .|-..+..-+...|++..|.+-+-.+ .-+.+-++||...+.|++|
T Consensus 863 ~~~~ddmirlv~k~-----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea----------~d~kaavnmyk~s~lw~da 927 (1636)
T KOG3616|consen 863 HGLDDDMIRLVEKH-----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA----------GDFKAAVNMYKASELWEDA 927 (1636)
T ss_pred hCcchHHHHHHHHh-----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhh----------hhHHHHHHHhhhhhhHHHH
Confidence 6665 555555442 2332 23334444455567777666554322 1234567888888888888
Q ss_pred HHHHhhCCCCCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCC
Q 001763 682 RLLFTEFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYD 761 (1017)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 761 (1017)
.++-+.-.. .|.. .......++.--.+.|++++++. | .+...++-.+..+.++-|..+-....+...
T Consensus 928 yriaktegg-~n~~--k~v~flwaksiggdaavkllnk~---g------ll~~~id~a~d~~afd~afdlari~~k~k~- 994 (1636)
T KOG3616|consen 928 YRIAKTEGG-ANAE--KHVAFLWAKSIGGDAAVKLLNKH---G------LLEAAIDFAADNCAFDFAFDLARIAAKDKM- 994 (1636)
T ss_pred HHHHhcccc-ccHH--HHHHHHHHHhhCcHHHHHHHHhh---h------hHHHHhhhhhcccchhhHHHHHHHhhhccC-
Confidence 887665433 2211 11111122222234556655542 1 011122223445556666555544443322
Q ss_pred CCcchHhHHHhHHHhcCCHHHHHHHHHhccCCCh-hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 001763 762 LDEITGSALIDMYAKCGDVKRSAQVFDEMAERNY-VISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTA 840 (1017)
Q Consensus 762 ~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 840 (1017)
..+...+...+...|++++|.+.+-+..+-+. ..+|-.-+- .+++ -+.++.|-+|.... .+
T Consensus 995 --~~vhlk~a~~ledegk~edaskhyveaiklntynitwcqavp-----srfd------~e~ir~gnkpe~av-----~m 1056 (1636)
T KOG3616|consen 995 --GEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVP-----SRFD------AEFIRAGNKPEEAV-----EM 1056 (1636)
T ss_pred --ccchhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhccc-----chhh------HHHHHcCCChHHHH-----HH
Confidence 34555667778889999999888877666332 235542211 1111 11223333333221 12
Q ss_pred cccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHH-------------hhhccCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001763 841 CSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVD-------------LLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLG 907 (1017)
Q Consensus 841 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~-------------~l~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~ 907 (1017)
+.+..+|..|.++-+.-.+ ..-++.|..-.. .+.|+++.+-|+.++.+...-|| -+.
T Consensus 1057 fi~dndwa~aervae~h~~----~~l~dv~tgqar~aiee~d~~kae~fllrankp~i~l~yf~e~~lw~d------alr 1126 (1636)
T KOG3616|consen 1057 FIHDNDWAAAERVAEAHCE----DLLADVLTGQARGAIEEGDFLKAEGFLLRANKPDIALNYFIEAELWPD------ALR 1126 (1636)
T ss_pred hhhcccHHHHHHHHHhhCh----hhhHHHHhhhhhccccccchhhhhhheeecCCCchHHHHHHHhccChH------HHH
Confidence 3445555555544333211 001112211111 23344444444444444333333 333
Q ss_pred HHHh---cCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCCcc--CCceeEEEECCEEEEE
Q 001763 908 ACGV---HRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVKK--FPGCSWIVLGQNTNFF 982 (1017)
Q Consensus 908 ~~~~---~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~--~~g~s~i~~~~~~~~f 982 (1017)
.|.. |.-...-++.-+.+++....-...++.-+.-+.+.|+|.+|...+-++....... ....+|-...+.+..|
T Consensus 1127 i~kdylp~q~a~iqeeyek~~~k~gargvd~fvaqak~weq~gd~rkav~~~lkinrdst~nd~l~e~~~~kaadl~ikf 1206 (1636)
T KOG3616|consen 1127 IAKDYLPHQAAAIQEEYEKEALKKGARGVDGFVAQAKEWEQAGDWRKAVDALLKINRDSTDNDALAEHCTEKAADLSIKF 1206 (1636)
T ss_pred HHHhhChhHHHHHHHHHHHHHHhccccccHHHHHHHHHHHhcccHHHHHHHHhhhccCCCCcHHHHHHHHHHHHhhhhhh
Confidence 3321 1111111233344566777778889999999999999999998887774433222 2455666666777788
Q ss_pred ecCCCC
Q 001763 983 VAGDTS 988 (1017)
Q Consensus 983 ~~~d~~ 988 (1017)
..||.+
T Consensus 1207 l~~d~n 1212 (1636)
T KOG3616|consen 1207 LMGDEN 1212 (1636)
T ss_pred cCCccc
Confidence 888875
No 53
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.40 E-value=1.7e-10 Score=128.31 Aligned_cols=283 Identities=9% Similarity=-0.015 Sum_probs=182.0
Q ss_pred CCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCC-CCCc--eeehhhhhhcccCCCchHHHH
Q 001763 639 PYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPN-PKST--VLWTAVISGHAQNDSNYEALH 715 (1017)
Q Consensus 639 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~--~~~~~li~~~~~~g~~~~A~~ 715 (1017)
.|+++.|.+.+....+.. |.....+...+..+.+.|+.+.|.+.+.+..+ .++. ...-+....+.+.|++++|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 455566665555554443 23344444556666667777777777766433 1111 122223555666777777777
Q ss_pred HHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHh-HHHhHH---H----hcCCHHHHHHHH
Q 001763 716 FYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGS-ALIDMY---A----KCGDVKRSAQVF 787 (1017)
Q Consensus 716 ~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~y---~----~~g~~~~A~~~~ 787 (1017)
.++++.+.. +-+...+..+..++...|+++++.+.+..+.+.+.. +...+. .-..++ . .....+...+.+
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 777777653 223445666667777777777777777777776543 222221 111111 1 122234444455
Q ss_pred HhccC---CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHh---HHHHHHHcccCCcHHHHHHHHHHhhhhc
Q 001763 788 DEMAE---RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVT---FLGVLTACSHAGRVSEGRQIFETMVSCH 861 (1017)
Q Consensus 788 ~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 861 (1017)
+..+. ++.. .+..++..+...|+.++|++.+++.++. .||... ...........++.+++.+.+++..+.+
T Consensus 253 ~~~p~~~~~~~~-l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 253 KNQPRHRRHNIA-LKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHCCHHHhCCHH-HHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 55543 2444 7888899999999999999999999984 466542 1222222344688889999998888743
Q ss_pred CCCcCchhHHHHHHhhhccCCHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhh
Q 001763 862 GIQPRVDHCACMVDLLGRWGFLKEAEEFIEQ---LTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIEL 928 (1017)
Q Consensus 862 ~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~---~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~ 928 (1017)
...|+.....++..++.+.|++++|.+.+++ ....||+.++..++..+...|+.++|...+++.+.+
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3333324566888999999999999999993 356899988888989999999999999999998765
No 54
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=9.3e-11 Score=120.72 Aligned_cols=217 Identities=9% Similarity=0.042 Sum_probs=142.5
Q ss_pred CCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHH
Q 001763 707 NDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQV 786 (1017)
Q Consensus 707 ~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~ 786 (1017)
.|+...|.+.|+..+.....++.. |.-+..+|....+.++....|..+.+.++. ++.+|..-+.++.-.+++++|..-
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHH
Confidence 355555555566655543222221 555566677777777777777777777776 777777777777777888888888
Q ss_pred HHhccCC--ChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCC
Q 001763 787 FDEMAER--NYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGI 863 (1017)
Q Consensus 787 ~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 863 (1017)
|++...- ..+.+|..+..+..+.+++++++..|++.++. -|+. ..|+....++..++++++|.+.|+..++ +
T Consensus 417 F~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---L 491 (606)
T KOG0547|consen 417 FQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---L 491 (606)
T ss_pred HHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---h
Confidence 8777663 33335566666666777788888888887774 4554 5677777777778888888888887766 4
Q ss_pred CcC-------chhHHHHHH-hhhccCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCchHHHHHHHHHHhhCC
Q 001763 864 QPR-------VDHCACMVD-LLGRWGFLKEAEEFIEQL-TFEPDSR-IWTTLLGACGVHRDDIRGRLAAKKLIELEP 930 (1017)
Q Consensus 864 ~p~-------~~~~~~l~~-~l~~~g~~~eA~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p 930 (1017)
.|+ +..+-.=.- ++.=.+++.+|++++++. .+.|... .+.+|+..-.++|+.++|+++|++.+.+.-
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred ccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 444 111111111 122236788888888775 4666544 677777777777888888888888777644
No 55
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.39 E-value=8.3e-10 Score=120.54 Aligned_cols=399 Identities=14% Similarity=0.063 Sum_probs=240.9
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHhcCCC---CCchhHHHHHHHHhhCCch-HHHHHHHHHHHcCCCCChHH-HHHHHH
Q 001763 560 NIYVGSSLIDMYVKCGFIGAAHKVLSCMPQ---RNVVSMNALIAGYAQNNVE-DAVVLYRGMQTEGLSPNDIT-FTSLLD 634 (1017)
Q Consensus 560 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~-~A~~l~~~m~~~g~~p~~~t-~~~ll~ 634 (1017)
+..+|..|.-+...+|+++.+.+.|++... .....|+.+-..|...|.. .|+.++++-....-.|+..+ +...-.
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmask 401 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASK 401 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHH
Confidence 889999999999999999999999998764 3456899999999998988 99999988776554565544 433444
Q ss_pred hcc-CCCccchhhHHHHHHHHhC--CC-CCchHHHHHHHHHHHhcC----C-------hHHHHHHHhhCCC--CCCceee
Q 001763 635 ACD-GPYKFHLGTQIHCLIVKKG--LL-FDDDFLHIALLSMYMNSK----R-------NTDARLLFTEFPN--PKSTVLW 697 (1017)
Q Consensus 635 a~~-~~~~~~~a~~~~~~~~~~~--~~-p~~~~~~~~l~~~~~~~g----~-------~~~A~~~~~~~~~--~~~~~~~ 697 (1017)
.|. +.+.+++|..+..+++... .. .-.+..+..++-.|...- . ..++.+.+++..+ |.|+..-
T Consensus 402 lc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~i 481 (799)
T KOG4162|consen 402 LCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVI 481 (799)
T ss_pred HHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHH
Confidence 453 4588899998888877621 11 122334444444443321 1 1223333333322 2333222
Q ss_pred hhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhc
Q 001763 698 TAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKC 777 (1017)
Q Consensus 698 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~ 777 (1017)
..+..-|+..++.+.|+...++..+.+-.-+...|.-+.-..+..+++.+|..+.+..++.-.. |-.....-+..-..-
T Consensus 482 f~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~l~~~~~~i~~~~ 560 (799)
T KOG4162|consen 482 FYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHVLMDGKIHIELTF 560 (799)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhhhchhhhhhhhhc
Confidence 2233335555666666666666666544555555555555556666666666666555432221 111111111111223
Q ss_pred CCHHHHHHHHHhccC-----CChhH------HHHHHHHHHHhCCCHHHHHHHHHHHHH--------CC---------CC-
Q 001763 778 GDVKRSAQVFDEMAE-----RNYVI------SWNSMIVGFAKNGYAEDALKVFHEMKE--------TQ---------AM- 828 (1017)
Q Consensus 778 g~~~~A~~~~~~~~~-----~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~~--------~g---------~~- 828 (1017)
|+.++|......+.. +++.. .-..-...-..+++..+|.+...++.. .| +.
T Consensus 561 ~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~ 640 (799)
T KOG4162|consen 561 NDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLP 640 (799)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccC
Confidence 333333333222211 00000 000000001111222223222222210 01 11
Q ss_pred -CChH------hHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcC-chhHHHHHHhhhccCCHHHHHHHHHhC-CCCCCH
Q 001763 829 -PDDV------TFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPR-VDHCACMVDLLGRWGFLKEAEEFIEQL-TFEPDS 899 (1017)
Q Consensus 829 -p~~~------~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~~ 899 (1017)
|+.. .+......+...+..++|.-.+.+..+ +.|- ...|.-....+...|+++||.+.|... .++|+.
T Consensus 641 ~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h 717 (799)
T KOG4162|consen 641 GPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH 717 (799)
T ss_pred CCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC
Confidence 2321 223445567888888999887777654 5554 445666678899999999999988764 688865
Q ss_pred H-HHHHHHHHHHhcCCchHHHH--HHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHc
Q 001763 900 R-IWTTLLGACGVHRDDIRGRL--AAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREK 962 (1017)
Q Consensus 900 ~-~~~~ll~~~~~~g~~~~a~~--~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 962 (1017)
+ +..+++..+-.-|+-..|+. ....+++++|.|+.+++.||.++.+.|+.++|.+.+....+.
T Consensus 718 v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 718 VPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 5 78888888888898888887 999999999999999999999999999999999999877664
No 56
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=5e-07 Score=101.18 Aligned_cols=621 Identities=11% Similarity=0.081 Sum_probs=306.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhcCC-CCccchH-----HHHHHHhccCCchHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 001763 260 FVTVINVCFNLGRLDEARELFAQMQN-PNVVAWN-----VMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLSGI 333 (1017)
Q Consensus 260 ~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 333 (1017)
+..+.+.|.+.|-+..|++.+..+.+ ...+.-+ --+..|.-.-.++++.+.++.|...+++.|..+...+..-|
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky 688 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKY 688 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 66778888889999888888877654 1111111 12334555667899999999999988888877776666655
Q ss_pred hcccchhHHHHHHHHHHHh-----------CCCCchhhhHHHHHHHHccCChhHHHHHHhhcCCC---------------
Q 001763 334 SSLAALDFGLIVHAEAIKQ-----------GLYSNVYVASSLINMYAKCEKMESAKKVFDSLDER--------------- 387 (1017)
Q Consensus 334 ~~~~~~~~a~~~~~~~~~~-----------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------------- 387 (1017)
...-..+...++|+..... ++.-|+.+.-..|.+.++.|++.+.+++.++-..-
T Consensus 689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~ 768 (1666)
T KOG0985|consen 689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLT 768 (1666)
T ss_pred HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcccc
Confidence 5544444444444443321 34557777778899999999999999888653311
Q ss_pred ---------CcchH-------------HHHHHHHHhCCChhHHHHHHHhhhhcCCCCC-----------hhcHHHHHHhh
Q 001763 388 ---------NAVLW-------------NALLGGYSQNCYAHEVVDLFFAMKSSGFHAD-----------DFTYTSILSSC 434 (1017)
Q Consensus 388 ---------~~~~~-------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----------~~t~~~ll~a~ 434 (1017)
|..-+ ...|..|.+.-++...-.+...+.+-.+.-+ .+...-+..-+
T Consensus 769 DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~Ev 848 (1666)
T KOG0985|consen 769 DQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEV 848 (1666)
T ss_pred ccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHH
Confidence 00001 1122333332222222211111111100000 00111122222
Q ss_pred hcccchHhhHHHHHHHHHhcCCchhhHHHHHHHHhhccCChhHHHHHHhhcCCCCcccchhhhHHhHhcCCHHHHHHHHH
Q 001763 435 ACLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFR 514 (1017)
Q Consensus 435 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 514 (1017)
.+.+++..-..+++..+..|.. |..++|+|...|...++-.+- ++. .|..-=+..+.-||...++.-|.-.|+
T Consensus 849 EkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~--fLk----eN~yYDs~vVGkYCEKRDP~lA~vaYe 921 (1666)
T KOG0985|consen 849 EKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPER--FLK----ENPYYDSKVVGKYCEKRDPHLACVAYE 921 (1666)
T ss_pred HhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHH--hcc----cCCcchhhHHhhhhcccCCceEEEeec
Confidence 3333333344444444444432 445555555555544332211 111 111111122333444444433332222
Q ss_pred HhhccCCCCCcccHHHHHHHhhcccCCCcchhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcC-----C-
Q 001763 515 RMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCM-----P- 588 (1017)
Q Consensus 515 ~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~-----~- 588 (1017)
+-.. | .-++..|-.... |...-+.-+...|...|..++.- .-..=+.++++. +
T Consensus 922 rGqc-----D----~elI~vcNeNSl-------fK~~aRYlv~R~D~~LW~~VL~e-----~n~~rRqLiDqVv~tal~E 980 (1666)
T KOG0985|consen 922 RGQC-----D----LELINVCNENSL-------FKSQARYLVERSDPDLWAKVLNE-----ENPYRRQLIDQVVQTALPE 980 (1666)
T ss_pred ccCC-----c----HHHHHhcCchhH-------HHHHHHHHHhccChHHHHHHHhc-----cChHHHHHHHHHHHhcCCc
Confidence 2110 0 112222211111 10000000011133333332210 000001122211 1
Q ss_pred CCCchhHHHHHHHHhhCCch-HHHHHHHHHHHcCCCCC-hHHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHH
Q 001763 589 QRNVVSMNALIAGYAQNNVE-DAVVLYRGMQTEGLSPN-DITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHI 666 (1017)
Q Consensus 589 ~~~~~~~~~li~~~~~~~~~-~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 666 (1017)
..|+..-+..+.++...+.+ +-++++++..-..-.-+ ....-.|+-.-+-..+..+..++...+-..+.+
T Consensus 981 ~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~-------- 1052 (1666)
T KOG0985|consen 981 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAP-------- 1052 (1666)
T ss_pred cCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCch--------
Confidence 14555566667778888887 88888888764321111 111212221111112222222222222211110
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC------------------------CCCceeehhhhhhcccCCCchHHHHHHHHHHH
Q 001763 667 ALLSMYMNSKRNTDARLLFTEFPN------------------------PKSTVLWTAVISGHAQNDSNYEALHFYREMRS 722 (1017)
Q Consensus 667 ~l~~~~~~~g~~~~A~~~~~~~~~------------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 722 (1017)
.+++.....+-+++|..+|+.... -..+..|+.+..+-.+.|...+|++-|-+.
T Consensus 1053 ~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika-- 1130 (1666)
T KOG0985|consen 1053 DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA-- 1130 (1666)
T ss_pred hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc--
Confidence 122233333444444444443221 022456777777777777777777665443
Q ss_pred CCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCChhHHHHHH
Q 001763 723 HNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSM 802 (1017)
Q Consensus 723 ~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~l 802 (1017)
-|...|.-+++++.+.|.+++-..++.++.+..-+| .+-+.|+-+|++.+++.+-++++. .++.. -...+
T Consensus 1131 ----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~--~id~eLi~AyAkt~rl~elE~fi~---gpN~A-~i~~v 1200 (1666)
T KOG0985|consen 1131 ----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP--YIDSELIFAYAKTNRLTELEEFIA---GPNVA-NIQQV 1200 (1666)
T ss_pred ----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc--cchHHHHHHHHHhchHHHHHHHhc---CCCch-hHHHH
Confidence 244567777777788888877777777766655543 344567777777777777666543 23433 44556
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCC
Q 001763 803 IVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGF 882 (1017)
Q Consensus 803 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~ 882 (1017)
..-|...|.++.|.-+|.. ...|..|...+.+.|.+..|...-++. -+..+|-.+..++...+.
T Consensus 1201 Gdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCvd~~E 1264 (1666)
T KOG0985|consen 1201 GDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACVDKEE 1264 (1666)
T ss_pred hHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHhchhh
Confidence 6667777777777666543 234555556666666666665544332 223445445455544444
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhc
Q 001763 883 LKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAAL 946 (1017)
Q Consensus 883 ~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~ 946 (1017)
+.-|.- -.+.+--...-..-|..-|...|-+++-+..+|..+-++--.-+.+.-|+-+|.+-
T Consensus 1265 FrlAQi--CGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1265 FRLAQI--CGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred hhHHHh--cCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 333321 00111112223445666677778888888888888888877778888888777765
No 57
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.38 E-value=3.6e-11 Score=124.12 Aligned_cols=198 Identities=13% Similarity=0.103 Sum_probs=165.9
Q ss_pred CcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHH
Q 001763 763 DEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLT 839 (1017)
Q Consensus 763 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~ 839 (1017)
....+..++..|...|++++|.+.+++... ++....|..++..+...|++++|++.+++.++. .|+. ..+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHH
Confidence 456778889999999999999999998765 444447888999999999999999999999984 4543 66778888
Q ss_pred HcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchH
Q 001763 840 ACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIR 917 (1017)
Q Consensus 840 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 917 (1017)
.+...|++++|.+.|+++.+..........+..+..++.+.|++++|.+.+++. ...| +...|..++..+...|+++.
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 899999999999999999873222223456777888999999999999999875 3455 45578888888999999999
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHc
Q 001763 918 GRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREK 962 (1017)
Q Consensus 918 a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 962 (1017)
|...++++++..|.++..+..++.++...|++++|....+.+...
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999998877653
No 58
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.37 E-value=4.2e-11 Score=126.39 Aligned_cols=213 Identities=15% Similarity=0.069 Sum_probs=151.8
Q ss_pred CcHHHHHHHHHHHHHhCC---CCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHH
Q 001763 743 SSLRDGGEIHSLIFHTGY---DLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALK 817 (1017)
Q Consensus 743 ~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 817 (1017)
+..+.+..-+.+++.... ......|..++.+|.+.|++++|...|++..+ |+....|+.++..+...|++++|++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 345566666666664322 22345688888999999999999999988765 4445589999999999999999999
Q ss_pred HHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC-C-
Q 001763 818 VFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL-T- 894 (1017)
Q Consensus 818 ~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~- 894 (1017)
.|++.++ +.|+. .++..++.++...|++++|++.|++..+ ..|+.........++...++.++|.+.+++. .
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999998 67866 6778888888899999999999999877 4554432222223445678899999988653 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCchHHHHHHHHH-------HhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCC
Q 001763 895 FEPDSRIWTTLLGACGVHRDDIRGRLAAKKL-------IELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGV 964 (1017)
Q Consensus 895 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~-------l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 964 (1017)
..|+ .|.. .......|+...+ ..++.+ .++.|+.+.+|+.||.+|...|++++|+..+++..+.++
T Consensus 195 ~~~~--~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 LDKE--QWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CCcc--ccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 2333 3432 1222234555443 233333 366777788999999999999999999999988886654
No 59
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.36 E-value=9.7e-09 Score=112.42 Aligned_cols=449 Identities=14% Similarity=0.081 Sum_probs=268.0
Q ss_pred HHHHhcCCchhhHHHHHHHHhhccCChhHHHHHHhhcCC---CCcccchhhhHHhHhcCCHHHHHHHHHHhhccCCCCCc
Q 001763 449 VIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQN---QDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDD 525 (1017)
Q Consensus 449 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 525 (1017)
++.-..+..|..+|..|.-...++|+++.+.+.|++... .....|+.+...|.-.|....|+.+++.-....-.|+.
T Consensus 313 k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~ 392 (799)
T KOG4162|consen 313 KLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSD 392 (799)
T ss_pred HHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCc
Confidence 333345667889999999999999999999999998764 34457999999999999999999999987765444655
Q ss_pred ccHHHHHH-Hhh-cccCCCcchhHHHHHhhhCCCC---CchHHHHHHHHHHHHcCCHHHHHHHHhcCCCCCchhHHHHHH
Q 001763 526 VSSASILS-ACA-NIQGLPQGEQVHCFSVKTSLET---SNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIA 600 (1017)
Q Consensus 526 ~t~~~ll~-a~~-~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 600 (1017)
.+-..+.. .|. +.+.+++|...-..++...... -.+..+-.+.-+|...-. +.+ +|.
T Consensus 393 ~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~------------~a~--~~s---- 454 (799)
T KOG4162|consen 393 ISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR------------QAN--LKS---- 454 (799)
T ss_pred chHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh------------cCC--ChH----
Confidence 54443333 343 3455555555544444311000 011112222222211100 000 000
Q ss_pred HHhhCCch-HHHHHHHHHHHc-CCCCChHHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCh
Q 001763 601 GYAQNNVE-DAVVLYRGMQTE-GLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRN 678 (1017)
Q Consensus 601 ~~~~~~~~-~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 678 (1017)
-+.... ++++.+++..+. +-.|+..-|.++-.| ..++++.|.+.....++.+-. .+...+..|+-++...+++
T Consensus 455 --eR~~~h~kslqale~av~~d~~dp~~if~lalq~A--~~R~l~sAl~~~~eaL~l~~~-~~~~~whLLALvlSa~kr~ 529 (799)
T KOG4162|consen 455 --ERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYA--EQRQLTSALDYAREALALNRG-DSAKAWHLLALVLSAQKRL 529 (799)
T ss_pred --HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH--HHHhHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhh
Confidence 001112 677777777654 344555555555443 456788888888888877543 7777888888888888888
Q ss_pred HHHHHHHhhCCC--CCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHH
Q 001763 679 TDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIF 756 (1017)
Q Consensus 679 ~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 756 (1017)
.+|+.+.+.... +.|.+....-+..-..-++.++|+.....++.- --+...+. ..++-....+....+.
T Consensus 530 ~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--we~~~~~q-------~~~~~g~~~~lk~~l~ 600 (799)
T KOG4162|consen 530 KEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLAL--WEAEYGVQ-------QTLDEGKLLRLKAGLH 600 (799)
T ss_pred HHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH--HHhhhhHh-------hhhhhhhhhhhhcccc
Confidence 888888776554 333332222233333356777777666666431 00000000 0011001111111110
Q ss_pred --HhCCCCCcchHhHHHhHHHhcC---CHHHHHHHHHhccCCChh-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 001763 757 --HTGYDLDEITGSALIDMYAKCG---DVKRSAQVFDEMAERNYV-----ISWNSMIVGFAKNGYAEDALKVFHEMKETQ 826 (1017)
Q Consensus 757 --~~~~~~~~~~~~~l~~~y~~~g---~~~~A~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 826 (1017)
...+.-.+.++..+.......+ ..+.....+.....++.. ..|......+...++.++|.-.+.+...
T Consensus 601 la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~-- 678 (799)
T KOG4162|consen 601 LALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK-- 678 (799)
T ss_pred cCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--
Confidence 0011112233333333222111 111111222222222211 2456667778888889999888888777
Q ss_pred CCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcC-chhHHHHHHhhhccCCHHHHHH--HHHhC-CCCC-CHH
Q 001763 827 AMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPR-VDHCACMVDLLGRWGFLKEAEE--FIEQL-TFEP-DSR 900 (1017)
Q Consensus 827 ~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~l~~~g~~~eA~~--~~~~~-~~~p-~~~ 900 (1017)
+.|-. ..|...+..+...|+++||.+.|..... +.|+ +.....+..+|.+.|+..-|.+ ++..+ .+.| ++.
T Consensus 679 ~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~e 755 (799)
T KOG4162|consen 679 IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHE 755 (799)
T ss_pred cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHH
Confidence 45544 5566666778889999999999998866 6665 5677888899999998766666 76654 6777 566
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCc
Q 001763 901 IWTTLLGACGVHRDDIRGRLAAKKLIELEPENPS 934 (1017)
Q Consensus 901 ~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~ 934 (1017)
.|..|+-...+.||.+.|...|..++++++.+|.
T Consensus 756 aW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 756 AWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999999999999999999999999999988764
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=99.35 E-value=7.9e-11 Score=136.19 Aligned_cols=245 Identities=12% Similarity=0.013 Sum_probs=185.9
Q ss_pred CchHHHHHHHHHHHCCCCcCH-HhHHHHHHHHh---------ccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcC
Q 001763 709 SNYEALHFYREMRSHNVLPDQ-ATFVSVLRACA---------VLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCG 778 (1017)
Q Consensus 709 ~~~~A~~~~~~m~~~~~~pd~-~t~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g 778 (1017)
..++|+.+|++.++. .|+. ..+..+..++. ..+++++|...++++++.++. +...+..++.++...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcc
Confidence 457888889888874 5654 34444443332 234589999999999999887 8889999999999999
Q ss_pred CHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChH-hHHHHHHHcccCCcHHHHHHHHH
Q 001763 779 DVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDV-TFLGVLTACSHAGRVSEGRQIFE 855 (1017)
Q Consensus 779 ~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~ 855 (1017)
++++|+..|++..+ |+....|..++..+...|++++|+..++++++ +.|+.. .+..++.++...|++++|+..++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999998876 55555889999999999999999999999999 567653 33444555667899999999999
Q ss_pred HhhhhcCCCcC-chhHHHHHHhhhccCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC
Q 001763 856 TMVSCHGIQPR-VDHCACMVDLLGRWGFLKEAEEFIEQL-TFEPDSR-IWTTLLGACGVHRDDIRGRLAAKKLIELEPEN 932 (1017)
Q Consensus 856 ~m~~~~~~~p~-~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~ 932 (1017)
++.+. ..|+ +..+..+..+|...|++++|.+.++++ +..|+.. .+..+...+...| +.|...++++++..-..
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 98762 2454 445777888999999999999999886 4566555 4444555566666 47888788877765544
Q ss_pred CchHHHHHHHHHhcCCcHHHHHHHHHHHHcC
Q 001763 933 PSPYVQLSNIYAALGNWNEVNTLRREMREKG 963 (1017)
Q Consensus 933 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 963 (1017)
+.....+..+|.-.|+-+.+..+ +++.+.+
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 44555588999999998877766 6666543
No 61
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=1.8e-08 Score=103.52 Aligned_cols=421 Identities=13% Similarity=0.097 Sum_probs=210.7
Q ss_pred CCHHHHHHHHHhcCC---CCccchHHHHHHHhccCCchHHHHHHHHHHhcCCCCChhhHHHHHHHHhcccchhHHHHHHH
Q 001763 271 GRLDEARELFAQMQN---PNVVAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHA 347 (1017)
Q Consensus 271 g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 347 (1017)
+++..|..+|++... .+...|--.+..-.++..+..|..+++..+. +-|...
T Consensus 87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt--~lPRVd----------------------- 141 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVT--ILPRVD----------------------- 141 (677)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHH--hcchHH-----------------------
Confidence 344455555555543 3445566666666677777777777777665 333221
Q ss_pred HHHHhCCCCchhhhHHHHHHHHccCChhHHHHHHhhcC--CCCcchHHHHHHHHHhCCChhHHHHHHHhhhhcCCCCChh
Q 001763 348 EAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFDSLD--ERNAVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDF 425 (1017)
Q Consensus 348 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 425 (1017)
..|...+.+=-..|++..|.++|++-. +|+..+|++.|..-.+.+..+.|..++++..- +.|+..
T Consensus 142 -----------qlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~ 208 (677)
T KOG1915|consen 142 -----------QLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVS 208 (677)
T ss_pred -----------HHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHH
Confidence 112222333333455555566655533 35555666666665666666666666665554 446666
Q ss_pred cHHHHHHhhhcccchHhhHHHHHHHHHh-c-CCchhhHHHHHHHHhhccCChhHHHHHHhhcCC----CC-cccchhhhH
Q 001763 426 TYTSILSSCACLEYLEMGRQLHAVIIKN-K-LATNLYVGNALVDMYAKSRALEEARKQFERIQN----QD-NVSWNAIIV 498 (1017)
Q Consensus 426 t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~~-~~~~~~li~ 498 (1017)
+|..-..-=.+.|+...+..++...++. | -.-+...+.+....-.++..++.|..+|+-..+ .. ...|.....
T Consensus 209 ~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~ 288 (677)
T KOG1915|consen 209 NWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTA 288 (677)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 6555555555556666666666555543 1 111233344444444455666666666544322 10 111222222
Q ss_pred HhHhcCCHH---HHHHHHHHhhccCCCCCcccHHHHHHHhhcccCCCcchhHHHHHhhhCCCCCchHHHHHHHHHHHHcC
Q 001763 499 GYVQEGDVF---EAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCG 575 (1017)
Q Consensus 499 ~~~~~g~~~---~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g 575 (1017)
---+.|+.. +++--=++++ +...++.+ |-|-.++--.++.-...|
T Consensus 289 fEKqfGd~~gIEd~Iv~KRk~q------------------------------YE~~v~~n--p~nYDsWfdylrL~e~~g 336 (677)
T KOG1915|consen 289 FEKQFGDKEGIEDAIVGKRKFQ------------------------------YEKEVSKN--PYNYDSWFDYLRLEESVG 336 (677)
T ss_pred HHHHhcchhhhHHHHhhhhhhH------------------------------HHHHHHhC--CCCchHHHHHHHHHHhcC
Confidence 112223322 2221111111 01111110 114455555666666677
Q ss_pred CHHHHHHHHhcCCCCCc-----hhHHHHHHHHhhCCchHHHHHHHHHHHcCCCCChHHHHHHHHhccCCCccchhhHHHH
Q 001763 576 FIGAAHKVLSCMPQRNV-----VSMNALIAGYAQNNVEDAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHC 650 (1017)
Q Consensus 576 ~~~~A~~~~~~~~~~~~-----~~~~~li~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 650 (1017)
+.+.-.++|++....-+ ..|...|-.... ..+|.++ ...+++.+++++.
T Consensus 337 ~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWin------YalyeEl--------------------e~ed~ertr~vyq 390 (677)
T KOG1915|consen 337 DKDRIRETYERAIANVPPASEKRYWRRYIYLWIN------YALYEEL--------------------EAEDVERTRQVYQ 390 (677)
T ss_pred CHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHH------HHHHHHH--------------------HhhhHHHHHHHHH
Confidence 77777777776542111 123322211100 0122222 2345566666666
Q ss_pred HHHHhCCCCCchHHHHHHHHHH----HhcCChHHHHHHHhhCCCCCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCC
Q 001763 651 LIVKKGLLFDDDFLHIALLSMY----MNSKRNTDARLLFTEFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVL 726 (1017)
Q Consensus 651 ~~~~~~~~p~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 726 (1017)
.+++. .|........+--|| .++.++..|++++..... ..
T Consensus 391 ~~l~l--IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG----------------------------------~c 434 (677)
T KOG1915|consen 391 ACLDL--IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG----------------------------------KC 434 (677)
T ss_pred HHHhh--cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc----------------------------------cC
Confidence 66662 244444333333333 355666666665554433 34
Q ss_pred cCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCCh----hHHHHHH
Q 001763 727 PDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNY----VISWNSM 802 (1017)
Q Consensus 727 pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~----~~~~~~l 802 (1017)
|-..+|..-|..-.+.++++....+++..++.+|. +..+|...+..=...|+.+.|..+|+-....+. ...|.+.
T Consensus 435 PK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaY 513 (677)
T KOG1915|consen 435 PKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAY 513 (677)
T ss_pred CchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHh
Confidence 55555555555555666666666666666666655 556666666666666666666666665443211 1356666
Q ss_pred HHHHHhCCCHHHHHHHHHHHHH
Q 001763 803 IVGFAKNGYAEDALKVFHEMKE 824 (1017)
Q Consensus 803 ~~~~~~~g~~~~A~~~~~~m~~ 824 (1017)
|.--...|.+++|-.+|+++++
T Consensus 514 IdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 514 IDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred hhhhhhcchHHHHHHHHHHHHH
Confidence 6666666667777777776666
No 62
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.32 E-value=4.4e-07 Score=97.30 Aligned_cols=511 Identities=15% Similarity=0.125 Sum_probs=243.2
Q ss_pred CCCCChhhHHHHHHHHhccCCHHHHHHHHHhcCCCCccchHHHHHHHhccCCchHHHHHHHHHHhc-CCCCChhhHHHHH
Q 001763 252 GCVPDQVAFVTVINVCFNLGRLDEARELFAQMQNPNVVAWNVMISGHAKRGYDAEAVNYFKRMRKA-GVKSSRSTLGSVL 330 (1017)
Q Consensus 252 g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll 330 (1017)
+..|+...|-.+-+++ +.++-.+.+|+ ..|-..+..+.++|++......|+..... -+......|...+
T Consensus 76 ~~~~T~~~~~~vn~c~------er~lv~mHkmp----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl 145 (835)
T KOG2047|consen 76 HLCPTDPAYESVNNCF------ERCLVFMHKMP----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYL 145 (835)
T ss_pred ccCCCChHHHHHHHHH------HHHHHHHhcCC----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHH
Confidence 3445555555444443 33444444443 45666667777777777777777766542 2233344566666
Q ss_pred HHHhcccchhHHHHHHHHHHHhCCCCchhhhHHHHHHHHccCChhHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHH
Q 001763 331 SGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFDSLDERNAVLWNALLGGYSQNCYAHEVVD 410 (1017)
Q Consensus 331 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 410 (1017)
......+-++.+..+++.-++.. +..-+.-|.-+++.+++++|.+.+..+...+... .+.|
T Consensus 146 ~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~--------sk~g------- 206 (835)
T KOG2047|consen 146 KFVESHGLPETSIRVYRRYLKVA----PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFV--------SKKG------- 206 (835)
T ss_pred HHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhh--------hhcc-------
Confidence 66666666666666666665542 2234445555666666666666665554332110 0000
Q ss_pred HHHhhhhcCCCCChhcHHHHHHhhhcccchHhhHHHHHHHHHhcC--Cch--hhHHHHHHHHhhccCChhHHHHHHhhcC
Q 001763 411 LFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKL--ATN--LYVGNALVDMYAKSRALEEARKQFERIQ 486 (1017)
Q Consensus 411 ~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~--~~~--~~~~~~li~~~~~~g~~~~A~~~f~~~~ 486 (1017)
+.+...|.-+-...++..+.-.... .+.+++.|+ -+| ...|++|.+-|.+.|.++.|+.+|++..
T Consensus 207 ----------kSn~qlw~elcdlis~~p~~~~sln-vdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai 275 (835)
T KOG2047|consen 207 ----------KSNHQLWLELCDLISQNPDKVQSLN-VDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAI 275 (835)
T ss_pred ----------cchhhHHHHHHHHHHhCcchhcccC-HHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 0111111111111111111111111 112222222 122 3567888888888888888888888765
Q ss_pred CC--CcccchhhhHHhHhcCCHHHHHHHHHHhh--ccCCCCCcccHHHHHHHhhcccCCCcchhHHHHHhhhCCCCCchH
Q 001763 487 NQ--DNVSWNAIIVGYVQEGDVFEAFNMFRRMN--LVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIY 562 (1017)
Q Consensus 487 ~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~g~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 562 (1017)
.. .+.-|+.+-++|++-....-+..+= +. +.|-.-+...+..-+..+ ..++... +.
T Consensus 276 ~~v~tvrDFt~ifd~Ya~FEE~~~~~~me--~a~~~~~n~ed~~dl~~~~a~~-------------e~lm~rr-----~~ 335 (835)
T KOG2047|consen 276 QTVMTVRDFTQIFDAYAQFEESCVAAKME--LADEESGNEEDDVDLELHMARF-------------ESLMNRR-----PL 335 (835)
T ss_pred HhheehhhHHHHHHHHHHHHHHHHHHHHh--hhhhcccChhhhhhHHHHHHHH-------------HHHHhcc-----ch
Confidence 42 3334555556665532211111110 10 011111111111111111 1111000 00
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCCCCCchhHHHHHHHHhhCCch-HHHHHHHHHHHcCCCCCh------HHHHHHHHh
Q 001763 563 VGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNVE-DAVVLYRGMQTEGLSPND------ITFTSLLDA 635 (1017)
Q Consensus 563 ~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~-~A~~l~~~m~~~g~~p~~------~t~~~ll~a 635 (1017)
..|+ ++-+-...++..|..-+.. ..|.. +-+..|.+..+. +.|-. ..|..+..-
T Consensus 336 ~lNs----------------VlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~fakl 396 (835)
T KOG2047|consen 336 LLNS----------------VLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKL 396 (835)
T ss_pred HHHH----------------HHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHH
Confidence 0010 0000001233344433322 22333 556666666554 44432 123344444
Q ss_pred ccCCCccchhhHHHHHHHHhCCCC--CchHHHHHHHHHHHhcCChHHHHHHHhhCCC-CCCceeehhhhhhcccCCCchH
Q 001763 636 CDGPYKFHLGTQIHCLIVKKGLLF--DDDFLHIALLSMYMNSKRNTDARLLFTEFPN-PKSTVLWTAVISGHAQNDSNYE 712 (1017)
Q Consensus 636 ~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~ 712 (1017)
+...|+++.|+.+++...+..+.- +-..++..-+++-.+..+++.|.++.+.... |.+.. ..+...+.+-+
T Consensus 397 Ye~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~------~~~yd~~~pvQ 470 (835)
T KOG2047|consen 397 YENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE------LEYYDNSEPVQ 470 (835)
T ss_pred HHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh------hhhhcCCCcHH
Confidence 455555555555555555443320 1133444445555555555555555544332 11111 11112222111
Q ss_pred HHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC
Q 001763 713 ALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE 792 (1017)
Q Consensus 713 A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~ 792 (1017)
+. +.-+...|...++.-...|-++..+.+++.+++..+. .+.+-...+..+.....++++.+++++-..
T Consensus 471 ~r----------lhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~ 539 (835)
T KOG2047|consen 471 AR----------LHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGIS 539 (835)
T ss_pred HH----------HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCc
Confidence 10 0112234555566666677888888888888887765 444444445555666678888888886543
Q ss_pred ----CChhHHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCCCCChHhHHHHHHH--cccCCcHHHHHHHHHHhhh
Q 001763 793 ----RNYVISWNSMIVGFAKN---GYAEDALKVFHEMKETQAMPDDVTFLGVLTA--CSHAGRVSEGRQIFETMVS 859 (1017)
Q Consensus 793 ----~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~m~~ 859 (1017)
|+....|++.+.-+.+. -..+.|..+|++.++ |..|...-+..|+-+ =..-|....|+.+|+++..
T Consensus 540 LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 540 LFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred cCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 55556787766555432 256888888888888 566665322223222 2334777777777777543
No 63
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.30 E-value=1.8e-09 Score=105.71 Aligned_cols=286 Identities=10% Similarity=0.080 Sum_probs=160.4
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCCce------eehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhH
Q 001763 659 FDDDFLHIALLSMYMNSKRNTDARLLFTEFPNPKSTV------LWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATF 732 (1017)
Q Consensus 659 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~ 732 (1017)
|...+...+|+++|.+.|+.+.|+++-+.+...||.. +.-.|..-|...|-++.|..+|..+.+.+ .--..+.
T Consensus 66 ~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~Al 144 (389)
T COG2956 66 PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGAL 144 (389)
T ss_pred chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHH
Confidence 4667778888889999999999988888776634432 22345555666777777777777776543 2223455
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhCCCCCc----chHhHHHhHHHhcCCHHHHHHHHHhccCCChhH--HHHHHHHHH
Q 001763 733 VSVLRACAVLSSLRDGGEIHSLIFHTGYDLDE----ITGSALIDMYAKCGDVKRSAQVFDEMAERNYVI--SWNSMIVGF 806 (1017)
Q Consensus 733 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~--~~~~l~~~~ 806 (1017)
..|+..|....++++|+.+.+++.+.+.++.. ..|.-|...+....+.+.|..++.+....+..+ +-..+...+
T Consensus 145 qqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~ 224 (389)
T COG2956 145 QQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVE 224 (389)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHH
Confidence 66666677777777777776666666554321 123344455555556666666666555433321 222344455
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCh--HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHH
Q 001763 807 AKNGYAEDALKVFHEMKETQAMPDD--VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLK 884 (1017)
Q Consensus 807 ~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~ 884 (1017)
...|++++|++.++...+. +|+- .+...|..+|.+.|+.+++...+..+.+ ..+..+.-..|.+......-.+
T Consensus 225 ~~~g~y~~AV~~~e~v~eQ--n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~---~~~g~~~~l~l~~lie~~~G~~ 299 (389)
T COG2956 225 LAKGDYQKAVEALERVLEQ--NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME---TNTGADAELMLADLIELQEGID 299 (389)
T ss_pred HhccchHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---ccCCccHHHHHHHHHHHhhChH
Confidence 5566666666666666653 3443 2344555566666666666666555554 2333333333333322222223
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHH---HhcCCcHHHHHHHHHHHH
Q 001763 885 EAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIY---AALGNWNEVNTLRREMRE 961 (1017)
Q Consensus 885 eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y---~~~g~~~~a~~~~~~m~~ 961 (1017)
+ |....-+-+...|.--+ ++.|.+.. +..|++.+-.-+.+.|..
T Consensus 300 ~--------------------------------Aq~~l~~Ql~r~Pt~~g-f~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 300 A--------------------------------AQAYLTRQLRRKPTMRG-FHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred H--------------------------------HHHHHHHHHhhCCcHHH-HHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 3 33333333344442221 22222221 134567777888888888
Q ss_pred cCCccCCceeEEEECCEEEEEe
Q 001763 962 KGVKKFPGCSWIVLGQNTNFFV 983 (1017)
Q Consensus 962 ~~~~~~~g~s~i~~~~~~~~f~ 983 (1017)
..++..|.+..-.-+=+.|+|.
T Consensus 347 e~l~~~~~YRC~~CGF~a~~l~ 368 (389)
T COG2956 347 EQLRRKPRYRCQNCGFTAHTLY 368 (389)
T ss_pred HHHhhcCCceecccCCcceeee
Confidence 8888888777776665666654
No 64
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.28 E-value=7.1e-07 Score=95.73 Aligned_cols=73 Identities=15% Similarity=0.186 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhCCCCCc-chHhHHHhHHHhcCCHHHHHHHHHhccC---CChh-HHHHHHHHHHHhCCCHHHHHHHHHHH
Q 001763 748 GGEIHSLIFHTGYDLDE-ITGSALIDMYAKCGDVKRSAQVFDEMAE---RNYV-ISWNSMIVGFAKNGYAEDALKVFHEM 822 (1017)
Q Consensus 748 a~~~~~~~~~~~~~~~~-~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m 822 (1017)
.+.+++++++.=+..+. .......++=++.|.++.|+.++.-..+ |... .-|.+.=.--.+||+ .+.+++|
T Consensus 641 TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn----edT~keM 716 (835)
T KOG2047|consen 641 TREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN----EDTYKEM 716 (835)
T ss_pred cHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC----HHHHHHH
Confidence 44555555554222221 2334456777889999999999875443 3221 367777777788998 3345555
Q ss_pred HH
Q 001763 823 KE 824 (1017)
Q Consensus 823 ~~ 824 (1017)
++
T Consensus 717 LR 718 (835)
T KOG2047|consen 717 LR 718 (835)
T ss_pred HH
Confidence 54
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.27 E-value=9.6e-11 Score=114.17 Aligned_cols=231 Identities=12% Similarity=0.064 Sum_probs=180.8
Q ss_pred hhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhc
Q 001763 698 TAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKC 777 (1017)
Q Consensus 698 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~ 777 (1017)
+.|..+|.+.|.+.+|.+.|+.-+.. .|-..||.-|-.+|.+..+.+.|..++...++.-|. |+.....+..++...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~-~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF-DVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc-hhhhhhhhHHHHHHH
Confidence 35666677777777777766666654 555567777777788888888888887777766554 666666677888888
Q ss_pred CCHHHHHHHHHhccCCCh--hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHH
Q 001763 778 GDVKRSAQVFDEMAERNY--VISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFE 855 (1017)
Q Consensus 778 g~~~~A~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 855 (1017)
++.++|.++++...+.+. +.+...+..+|.-.|+.+-|+..|+++++.|+. +...|.++.-+|...+++|-++..|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 888889888888776322 225556677888889999999999999998864 55778888888889999999988888
Q ss_pred HhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCC
Q 001763 856 TMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQLTFEP--DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENP 933 (1017)
Q Consensus 856 ~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~ 933 (1017)
+.+.. +. +| -.++|.+|.......||+..|.+.++-++-.+|++.
T Consensus 383 RAlst--------------------------------at-~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 383 RALST--------------------------------AT-QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred HHHhh--------------------------------cc-CcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 87651 11 22 245899999888889999999999999999999999
Q ss_pred chHHHHHHHHHhcCCcHHHHHHHHHHHHcCCc
Q 001763 934 SPYVQLSNIYAALGNWNEVNTLRREMREKGVK 965 (1017)
Q Consensus 934 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 965 (1017)
+++++|+-+-.+.|+.++|..++...+.....
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 99999999999999999999999887765443
No 66
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.26 E-value=1.2e-08 Score=104.85 Aligned_cols=431 Identities=13% Similarity=0.075 Sum_probs=308.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCCC---CCchhHHHHHHHHhhCCch-HHHHHHHHHHHcCCCCChHHHHHHHHhccC
Q 001763 563 VGSSLIDMYVKCGFIGAAHKVLSCMPQ---RNVVSMNALIAGYAQNNVE-DAVVLYRGMQTEGLSPNDITFTSLLDACDG 638 (1017)
Q Consensus 563 ~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~-~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 638 (1017)
++--...--...+++..|+.+|+.... +++..|--.+..-.++... .|..++++....-.+.|..-| -.+..-..
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~ 153 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEM 153 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHH
Confidence 333333333446667778888887764 5566676666666666666 888888887765333333333 22333345
Q ss_pred CCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCC-CCCceeehhhhhhcccCCCchHHHHHH
Q 001763 639 PYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPN-PKSTVLWTAVISGHAQNDSNYEALHFY 717 (1017)
Q Consensus 639 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~ 717 (1017)
.|++..|+++|..-.+.. |+...+.+.++.-.+.+.++.|+.+++...- .|++.+|-....---++|+..-|..+|
T Consensus 154 LgNi~gaRqiferW~~w~---P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEWE---PDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred hcccHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 688999999999888876 8889999999999999999999999998554 578888887777777889999999999
Q ss_pred HHHHHC-CC-CcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCC-cchHhHHHhHHHhcCCH---HHHHHHHH---
Q 001763 718 REMRSH-NV-LPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLD-EITGSALIDMYAKCGDV---KRSAQVFD--- 788 (1017)
Q Consensus 718 ~~m~~~-~~-~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~y~~~g~~---~~A~~~~~--- 788 (1017)
...++. |- .-+...|++...--...+.++.|.-++..+++.=+... ...|-.+...=-+-|+. ++++---.
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 988764 10 11223355555444567788999999998887766532 23333333333334554 44433222
Q ss_pred --hccCCCh--hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh--Hh---HHH--HHHHc---ccCCcHHHHHHHH
Q 001763 789 --EMAERNY--VISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD--VT---FLG--VLTAC---SHAGRVSEGRQIF 854 (1017)
Q Consensus 789 --~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~---~~~--l~~~~---~~~g~~~~a~~~~ 854 (1017)
.+...++ -.+|.-.+..-...|+.+...+.|++.+.. +.|-. .. |.. +--+| ....+++.+.++|
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 2222222 248998898888899999999999999985 55522 11 111 11122 3578999999999
Q ss_pred HHhhhhcCCCcCch-hHHHH----HHhhhccCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhh
Q 001763 855 ETMVSCHGIQPRVD-HCACM----VDLLGRWGFLKEAEEFIEQL-TFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIEL 928 (1017)
Q Consensus 855 ~~m~~~~~~~p~~~-~~~~l----~~~l~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~ 928 (1017)
+.+++ +-|.-. ++..+ ..-..|+.++..|.+.+-.. +.-|...++...+..-.+.++++....+|++.++-
T Consensus 390 q~~l~---lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 390 QACLD---LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred HHHHh---hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 99987 666533 44433 33347899999999999764 67788888888888888889999999999999999
Q ss_pred CCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCCccCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHH
Q 001763 929 EPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVKKFPGCSWIVLGQNTNFFVAGDTSHPNADRICAVLEDLTAS 1005 (1017)
Q Consensus 929 ~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~g~s~i~~~~~~~~f~~~d~~~~~~~~~~~~l~~l~~~ 1005 (1017)
.|.|-.++...+.+=...|+++.|..+++...++.....|..-|-..=+ |-.....+..+..+|..|-+.++.
T Consensus 467 ~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYId----FEi~~~E~ekaR~LYerlL~rt~h 539 (677)
T KOG1915|consen 467 SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYID----FEIEEGEFEKARALYERLLDRTQH 539 (677)
T ss_pred ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhh----hhhhcchHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999988877777666643322 777778888999999988776653
No 67
>PF13041 PPR_2: PPR repeat family
Probab=99.25 E-value=1.3e-11 Score=90.09 Aligned_cols=50 Identities=32% Similarity=0.656 Sum_probs=48.3
Q ss_pred CCchhHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHhhc
Q 001763 119 RDILAWNSILSMYSKRGSFENVFKSFGLLCNRGGVPNGFTFAIVLSACSK 168 (1017)
Q Consensus 119 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 168 (1017)
||+++||++|++|++.|++++|+++|++|.+.|+.||.+||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999975
No 68
>PRK12370 invasion protein regulator; Provisional
Probab=99.25 E-value=3.9e-10 Score=130.46 Aligned_cols=212 Identities=12% Similarity=-0.008 Sum_probs=170.6
Q ss_pred CcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHh---------cCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCC
Q 001763 743 SSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAK---------CGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGY 811 (1017)
Q Consensus 743 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~---------~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 811 (1017)
+++++|...++++++..+. +...+..++.+|.. .|++++|...+++..+ |+....|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 4568999999999998876 66777777776653 3458999999998876 4444588899999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCch-hHHHHHHhhhccCCHHHHHHH
Q 001763 812 AEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVD-HCACMVDLLGRWGFLKEAEEF 889 (1017)
Q Consensus 812 ~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~l~~~g~~~eA~~~ 889 (1017)
+++|+..|+++++ ..|+. ..+..+..+|...|++++|+..++++++ +.|+.. .+..+..++...|++++|++.
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999999 56876 5778888899999999999999999988 566543 333444456678999999999
Q ss_pred HHhCC--CCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHc
Q 001763 890 IEQLT--FEPD-SRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREK 962 (1017)
Q Consensus 890 ~~~~~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 962 (1017)
+++.. .+|+ +..+..++.++...|+.++|+..++++....|.+......|+..|...|+ +|....+.+.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHH
Confidence 98863 2454 44566677778889999999999999999999999999999999999994 777766666543
No 69
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=9.2e-09 Score=101.63 Aligned_cols=496 Identities=13% Similarity=0.058 Sum_probs=252.3
Q ss_pred cchHhhHHHHHHHHHhcCCchhhHHHHHHHHhhccCChhHHHHHHhhcCC---CCcccchhhhHHhHhcCCHHHHHHHHH
Q 001763 438 EYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQN---QDNVSWNAIIVGYVQEGDVFEAFNMFR 514 (1017)
Q Consensus 438 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 514 (1017)
.++..|..+++.-...+-+-...+---+..+|.+.|++++|...+..+.+ ++...|-.+...+.-.|.+.+|..+-.
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ 115 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAE 115 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 34444444444433222222222223344566777888888777776654 344566666666666777777776654
Q ss_pred HhhccCCCCCcccHHHHHHHhhcccCCCcchhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCCC--CCc
Q 001763 515 RMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQ--RNV 592 (1017)
Q Consensus 515 ~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~ 592 (1017)
+.-+ ++.....++...-+.++-++-..+|+.+.+ ...-.-+|..+.-..-.+.+|++++.++.. |+-
T Consensus 116 ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD------~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey 184 (557)
T KOG3785|consen 116 KAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD------TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY 184 (557)
T ss_pred hCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence 4322 223334444455555665555566655543 222334455554455568888888888764 444
Q ss_pred hhHHHHHHH-HhhCCch-HHHHHHHHHHHcCCCCChHHHHHHHHhccCCC--ccchhhHHHHHHHHhCCCCCchHHHHHH
Q 001763 593 VSMNALIAG-YAQNNVE-DAVVLYRGMQTEGLSPNDITFTSLLDACDGPY--KFHLGTQIHCLIVKKGLLFDDDFLHIAL 668 (1017)
Q Consensus 593 ~~~~~li~~-~~~~~~~-~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~~l 668 (1017)
...|..+.. |.+-... -+.+++.-..+. -||. |+..=+.+|..-. +-..+.+-.+.+.+.+-. .-+.....+
T Consensus 185 ~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~~~f~~~l~ 260 (557)
T KOG3785|consen 185 IALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-EYPFIEYLC 260 (557)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-cchhHHHHH
Confidence 556655544 3444444 455555555443 2333 2222333332211 111111111222211100 111111000
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHH
Q 001763 669 LSMYMNSKRNTDARLLFTEFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDG 748 (1017)
Q Consensus 669 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a 748 (1017)
-.-+.--..-+.|.+++-.+.. .-+.+--.|+-.|.+.++..+|..+.+++.- ..|-...+..+.
T Consensus 261 rHNLVvFrngEgALqVLP~L~~-~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv------------ 325 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMK-HIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVV------------ 325 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHh-hChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHH------------
Confidence 0001111122333333322211 1111222344456666666666666555421 122222221111
Q ss_pred HHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC----CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 001763 749 GEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE----RNYVISWNSMIVGFAKNGYAEDALKVFHEMKE 824 (1017)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 824 (1017)
..+++.-......+.-|.+.|+-.-. .|.++.-.+|+..+.-..++++.+..++....
T Consensus 326 ------------------~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s 387 (557)
T KOG3785|consen 326 ------------------FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES 387 (557)
T ss_pred ------------------HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111112222234445555554332 23333556777777777778888877777766
Q ss_pred CCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhH-HHHHHhhhccCCHHHHHHHHHhCCCCCCHHHHH
Q 001763 825 TQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHC-ACMVDLLGRWGFLKEAEEFIEQLTFEPDSRIWT 903 (1017)
Q Consensus 825 ~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~~l~~~l~~~g~~~eA~~~~~~~~~~p~~~~~~ 903 (1017)
--.+ |..--..+..+++..|.+.+|.++|-.+.. -.++ +...| ..+..+|.+.|+.+-|.+++-++.-+.+..+..
T Consensus 388 YF~N-dD~Fn~N~AQAk~atgny~eaEelf~~is~-~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLL 464 (557)
T KOG3785|consen 388 YFTN-DDDFNLNLAQAKLATGNYVEAEELFIRISG-PEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLL 464 (557)
T ss_pred HhcC-cchhhhHHHHHHHHhcChHHHHHHHhhhcC-hhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHH
Confidence 4222 333334577888888888888888877644 1122 22334 344678888888888888888776555555444
Q ss_pred HHH-HHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCCccCCceeEEEECCEEEEE
Q 001763 904 TLL-GACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVKKFPGCSWIVLGQNTNFF 982 (1017)
Q Consensus 904 ~ll-~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~g~s~i~~~~~~~~f 982 (1017)
.++ +-|++.+.+=-|.+++..+-.++| +|+.+ .|+-.....++.++-...-+..|+-..-|| +|
T Consensus 465 qlIAn~CYk~~eFyyaaKAFd~lE~lDP-~pEnW---------eGKRGACaG~f~~l~~~~~~~~p~~~~rEV---vh-- 529 (557)
T KOG3785|consen 465 QLIANDCYKANEFYYAAKAFDELEILDP-TPENW---------EGKRGACAGLFRQLANHKTDPIPISQMREV---VH-- 529 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHccCC-Ccccc---------CCccchHHHHHHHHHcCCCCCCchhHHHHH---HH--
Confidence 444 669999999999999988877888 34432 355556667777776655555554222111 11
Q ss_pred ecCCCCCCChHHHHHHH
Q 001763 983 VAGDTSHPNADRICAVL 999 (1017)
Q Consensus 983 ~~~d~~~~~~~~~~~~l 999 (1017)
...++.|.+++-..+..
T Consensus 530 llr~~~nsq~E~mikvv 546 (557)
T KOG3785|consen 530 LLRMKPNSQCEFMIKVV 546 (557)
T ss_pred HHHhCCCchHHHHHHHH
Confidence 34456666665444433
No 70
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.24 E-value=1.3e-09 Score=115.15 Aligned_cols=236 Identities=10% Similarity=-0.044 Sum_probs=171.9
Q ss_pred ccCCCchHHHHHHHHHHHCC-CCcC--HHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHH
Q 001763 705 AQNDSNYEALHFYREMRSHN-VLPD--QATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVK 781 (1017)
Q Consensus 705 ~~~g~~~~A~~~~~~m~~~~-~~pd--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~ 781 (1017)
...+..+.++..+.+++... ..|+ ...|......+...|+.++|...++.+++..+. ++..|+.++..|...|+++
T Consensus 37 ~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 37 QPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred CCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHH
Confidence 33466788888888888642 2333 245667777888999999999999999998886 7899999999999999999
Q ss_pred HHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhh
Q 001763 782 RSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVS 859 (1017)
Q Consensus 782 ~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 859 (1017)
+|...|++..+ |+...+|..++..+...|++++|++.|++.++ ..|+..........+...++.++|++.|++...
T Consensus 116 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 116 AAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 99999998865 55555899999999999999999999999999 567654222222234567889999999977654
Q ss_pred hcCCCcCchhHHHHHHhhhccCCHH--HHHHHHHh-CC----CCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCC-
Q 001763 860 CHGIQPRVDHCACMVDLLGRWGFLK--EAEEFIEQ-LT----FEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEP- 930 (1017)
Q Consensus 860 ~~~~~p~~~~~~~l~~~l~~~g~~~--eA~~~~~~-~~----~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p- 930 (1017)
...|+...+ .++..+ .|+++ ++.+.+.+ .. ..| ....|..++..+...|+.++|+..|+++++++|
T Consensus 194 --~~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 194 --KLDKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred --hCCccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 223333222 333333 44443 33333332 11 123 234799999999999999999999999999997
Q ss_pred CCCchHHHHHHHHHhcCC
Q 001763 931 ENPSPYVQLSNIYAALGN 948 (1017)
Q Consensus 931 ~~~~~~~~l~~~y~~~g~ 948 (1017)
++.+..+.+..+....++
T Consensus 269 ~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 269 NFVEHRYALLELALLGQD 286 (296)
T ss_pred hHHHHHHHHHHHHHHHhh
Confidence 666666666665554443
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.24 E-value=4.1e-10 Score=123.07 Aligned_cols=232 Identities=16% Similarity=0.197 Sum_probs=175.4
Q ss_pred HhHHHHHHHHhccCcHHHHHHHHHHHHHh-----CCC-CCcc-hHhHHHhHHHhcCCHHHHHHHHHhccC----------
Q 001763 730 ATFVSVLRACAVLSSLRDGGEIHSLIFHT-----GYD-LDEI-TGSALIDMYAKCGDVKRSAQVFDEMAE---------- 792 (1017)
Q Consensus 730 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~~~-~~~~l~~~y~~~g~~~~A~~~~~~~~~---------- 792 (1017)
.++..+...|...|+++.|...++..++. |.. |.+. ..+.++.+|...+++++|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45556777888899999998888877654 211 2222 233477899999999999999997753
Q ss_pred CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-----CCCC-Ch-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCc
Q 001763 793 RNYVISWNSMIVGFAKNGYAEDALKVFHEMKET-----QAMP-DD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQP 865 (1017)
Q Consensus 793 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g~~p-~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p 865 (1017)
+.+..+++.|...|.+.|++++|...+++.++. |..+ +. ..+..++..|...+.+++|..+++...+.+.-.|
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 222357888999999999999998888877652 2222 33 3567788889999999999999999877554222
Q ss_pred C------chhHHHHHHhhhccCCHHHHHHHHHhCC-------C--CCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhh-
Q 001763 866 R------VDHCACMVDLLGRWGFLKEAEEFIEQLT-------F--EPD-SRIWTTLLGACGVHRDDIRGRLAAKKLIEL- 928 (1017)
Q Consensus 866 ~------~~~~~~l~~~l~~~g~~~eA~~~~~~~~-------~--~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~- 928 (1017)
. ..+|+.|..+|...|+++||++++++.- . .+. ....+.|...|...+..+.|...|+..+.+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 2 3578999999999999999999987741 1 222 335667888898888999999999888765
Q ss_pred ---CC---CCCchHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 001763 929 ---EP---ENPSPYVQLSNIYAALGNWNEVNTLRREMRE 961 (1017)
Q Consensus 929 ---~p---~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 961 (1017)
.| +-...|.+|+-+|.++|++++|.++-.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 33 4456789999999999999999999887764
No 72
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.24 E-value=5.3e-07 Score=97.14 Aligned_cols=603 Identities=13% Similarity=0.104 Sum_probs=340.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHhcCC---CCccchHHHHHHHhccC
Q 001763 226 TSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEARELFAQMQN---PNVVAWNVMISGHAKRG 302 (1017)
Q Consensus 226 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g 302 (1017)
..++..| ..+++...+++.+...+ +.+--..|.....-.+...|+-++|......... .+.++|..+.-.+....
T Consensus 12 ~~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK 89 (700)
T KOG1156|consen 12 RRALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK 89 (700)
T ss_pred HHHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh
Confidence 3344333 44667777777777766 3333445555555566778888888888887775 45677888888888889
Q ss_pred CchHHHHHHHHHHhcCCCCChhhHHHHHHHHhcccchhHHHHHHHHHHHhCCCCchhhhHHHHHHHHccCChhHHHHHHh
Q 001763 303 YDAEAVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFD 382 (1017)
Q Consensus 303 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 382 (1017)
++++|++.|+.... +.||. ...+.-|.-.-++.|+++.....-.
T Consensus 90 ~Y~eaiKcy~nAl~--~~~dN----------------------------------~qilrDlslLQ~QmRd~~~~~~tr~ 133 (700)
T KOG1156|consen 90 KYDEAIKCYRNALK--IEKDN----------------------------------LQILRDLSLLQIQMRDYEGYLETRN 133 (700)
T ss_pred hHHHHHHHHHHHHh--cCCCc----------------------------------HHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 99999999998887 55653 2222222222222333333332222
Q ss_pred hc---CCCCcchHHHHHHHHHhCCChhHHHHHHHhhhhcC-CCCChhcHHHHHHhhhcccchHhhHHHHHHHHHhcCCch
Q 001763 383 SL---DERNAVLWNALLGGYSQNCYAHEVVDLFFAMKSSG-FHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLATN 458 (1017)
Q Consensus 383 ~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~ 458 (1017)
.. .......|..+..++.-.|+...|..+++...+.. -.|+...+.....-..
T Consensus 134 ~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly----------------------- 190 (700)
T KOG1156|consen 134 QLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLY----------------------- 190 (700)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHH-----------------------
Confidence 22 22355678888888888999999999988887654 2455554432221110
Q ss_pred hhHHHHHHHHhhccCChhHHHHHHhhcCCC--Cccc-chhhhHHhHhcCCHHHHHHHHHHhhccCCCCCcccHHHHHHHh
Q 001763 459 LYVGNALVDMYAKSRALEEARKQFERIQNQ--DNVS-WNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSAC 535 (1017)
Q Consensus 459 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~--~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~ 535 (1017)
-.....+.|.++.|.+.+...... |-.. -.+...-+.+.++.++|..+++.++.. .||..-|.-.+..
T Consensus 191 ------~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~- 261 (700)
T KOG1156|consen 191 ------QNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEK- 261 (700)
T ss_pred ------HHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHH-
Confidence 011133455566666655543321 2122 223445677788888888888888774 5665544433332
Q ss_pred hcccCCCcchhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHH-HHHhcCCCCCc-hhHHHHHHHHhhCCc--h-HH
Q 001763 536 ANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAH-KVLSCMPQRNV-VSMNALIAGYAQNNV--E-DA 610 (1017)
Q Consensus 536 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~-~~~~~~~~~~~-~~~~~li~~~~~~~~--~-~A 610 (1017)
++.+-.+.-++. .+|....+.-. ...-.-+.-..-+|. . ..
T Consensus 262 ----------------------------------~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~v 307 (700)
T KOG1156|consen 262 ----------------------------------ALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIV 307 (700)
T ss_pred ----------------------------------HHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHH
Confidence 222111111222 23322221000 000000011111222 2 44
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhC-C
Q 001763 611 VVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEF-P 689 (1017)
Q Consensus 611 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 689 (1017)
-..+..+.+.|+++--..+.++-.- |....+.-.++..|...-.-.......+.- .
T Consensus 308 dkyL~~~l~Kg~p~vf~dl~SLyk~-----------------------p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~ 364 (700)
T KOG1156|consen 308 DKYLRPLLSKGVPSVFKDLRSLYKD-----------------------PEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQ 364 (700)
T ss_pred HHHHHHHhhcCCCchhhhhHHHHhc-----------------------hhHhHHHHHHHHHHHhhcccccCCCccccccc
Confidence 4567778888887655555544321 111122223333333211111111111111 1
Q ss_pred CCCCceeehh--hhhhcccCCCchHHHHHHHHHHHCCCCcCHHh-HHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcch
Q 001763 690 NPKSTVLWTA--VISGHAQNDSNYEALHFYREMRSHNVLPDQAT-FVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEIT 766 (1017)
Q Consensus 690 ~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 766 (1017)
+||.+..|.. ++..|-..|+++.|...++..+.+ .|+.+- |..-.+.+.+.|++++|..+++.+.+.+.. |..+
T Consensus 365 E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a-DR~I 441 (700)
T KOG1156|consen 365 EPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA-DRAI 441 (700)
T ss_pred CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch-hHHH
Confidence 2577777874 677788899999999999999875 676544 445567889999999999999999887764 7766
Q ss_pred HhHHHhHHHhcCCHHHHHHHHHhccCCCh---------hHHHHHH--HHHHHhCCCHHHHHHHHHHHHHC--CCC---CC
Q 001763 767 GSALIDMYAKCGDVKRSAQVFDEMAERNY---------VISWNSM--IVGFAKNGYAEDALKVFHEMKET--QAM---PD 830 (1017)
Q Consensus 767 ~~~l~~~y~~~g~~~~A~~~~~~~~~~~~---------~~~~~~l--~~~~~~~g~~~~A~~~~~~m~~~--g~~---p~ 830 (1017)
-.--+.-..++.+.++|.++.......+. .++|..+ +.+|.+.|++.+|++-|..+-+. .+. -|
T Consensus 442 NsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfD 521 (700)
T KOG1156|consen 442 NSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFD 521 (700)
T ss_pred HHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhh
Confidence 66778888899999999999887765432 2578766 45688888888888766655431 011 12
Q ss_pred h----------HhHHHHHHHcccCCc-------HHHHHHHHHHhhhhcC-C---CcCchhHH-HHHHhhhccC-CHHHHH
Q 001763 831 D----------VTFLGVLTACSHAGR-------VSEGRQIFETMVSCHG-I---QPRVDHCA-CMVDLLGRWG-FLKEAE 887 (1017)
Q Consensus 831 ~----------~~~~~l~~~~~~~g~-------~~~a~~~~~~m~~~~~-~---~p~~~~~~-~l~~~l~~~g-~~~eA~ 887 (1017)
- -+|+-|+..+-..-. -..|+++|-.|-+... . .++.++.+ -.......+. ....|.
T Consensus 522 fhtyc~rk~tlrsYv~ll~~~d~L~~~p~y~~Aa~~Ai~iYl~l~d~p~~~~~~~~~~~~ms~e~kk~~~k~rk~~kk~~ 601 (700)
T KOG1156|consen 522 FHTYCMRKGTLRSYVELLEWEDNLRSSPYYLRAAKGAIEIYLRLHDSPNMYTNKADEIEKMSDEEKKIKKKQRKAKKKAK 601 (700)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCcccccccchhhhhccHHHHHHHHHHHHHHHHHH
Confidence 2 233444443322111 2356777777765220 0 11122222 1111111111 111122
Q ss_pred HHHH--------------hCCCCCCHHHHHHHHHHHHh-cCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHH
Q 001763 888 EFIE--------------QLTFEPDSRIWTTLLGACGV-HRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEV 952 (1017)
Q Consensus 888 ~~~~--------------~~~~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a 952 (1017)
+.-+ ..+..||... ++..... ..=.++|...+..+....+++...|..-..+|.+.|++.-+
T Consensus 602 ~e~~~~~~~~~~~~~s~~~~~~~~d~~~---~gekL~~t~~Pl~ea~kf~~~l~~~~~~~~~~~iL~~ely~rk~k~~l~ 678 (700)
T KOG1156|consen 602 KEAKKKKDKKKKEAKSQSGKPVDIDEDP---FGEKLLKTEDPLEEARKFLPNLQHKGKEKGETYILSFELYYRKGKFLLA 678 (700)
T ss_pred HHHHHHHHHHHhhhccccCCCCCCCCcc---hhhhHhhcCChHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHHH
Confidence 1111 1123344442 2222222 23356788888888899999999999999999999999999
Q ss_pred HHHHHHHHH
Q 001763 953 NTLRREMRE 961 (1017)
Q Consensus 953 ~~~~~~m~~ 961 (1017)
.+..+....
T Consensus 679 ~~~~~~~~~ 687 (700)
T KOG1156|consen 679 LACLNNAEG 687 (700)
T ss_pred HHHHHhhhh
Confidence 987766554
No 73
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.23 E-value=2.3e-09 Score=108.68 Aligned_cols=278 Identities=13% Similarity=0.108 Sum_probs=197.1
Q ss_pred cCChHHHHHHHhhCCC--CCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHH
Q 001763 675 SKRNTDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIH 752 (1017)
Q Consensus 675 ~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~ 752 (1017)
.|+|..|++...+-.+ +.....|..-+.+--+.|+.+.|-.++.+..+.--.++.....+........|+++.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4677777777666444 12223333334445567888888888888876422444455566666788889999999999
Q ss_pred HHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCChh----------HHHHHHHHHHHhCCCHHHHHHHHHHH
Q 001763 753 SLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYV----------ISWNSMIVGFAKNGYAEDALKVFHEM 822 (1017)
Q Consensus 753 ~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~m 822 (1017)
..+.+.++. ++.+......+|.+.|+|.+...+...+.+.+.. .+|+.++.-....+..+.=...+++.
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 999998887 7888899999999999999999999998874432 35666666655555555444555554
Q ss_pred HHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC-C-CCCCHH
Q 001763 823 KETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL-T-FEPDSR 900 (1017)
Q Consensus 823 ~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~-~~p~~~ 900 (1017)
-.. .+-+...-.+++.-+...|+.++|.++.+...+ ++-.|+.. .++ ...+-|+.+.=++.+++. . .+.++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk-~~~D~~L~---~~~-~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALK-RQWDPRLC---RLI-PRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH-hccChhHH---HHH-hhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 432 233334445566667889999999999998887 55556522 222 223444444444444332 1 222447
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHH
Q 001763 901 IWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMR 960 (1017)
Q Consensus 901 ~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 960 (1017)
.+.+|+..|.+++.+.+|...++.++...| +...|..++.+|.+.|+..+|.++++...
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 899999999999999999999999999998 67789999999999999999999998765
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.23 E-value=5.3e-10 Score=104.63 Aligned_cols=162 Identities=17% Similarity=0.177 Sum_probs=134.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcC-chhHHHHHH
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPR-VDHCACMVD 875 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~ 875 (1017)
....+.-+|.+.|+...|.+-+++.++ ..|+. .++..+...|.+.|..+.|.+.|++.++ +.|+ -+..++...
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhH
Confidence 455677788888888888888888888 56766 5777888888888888888888888876 5664 467778888
Q ss_pred hhhccCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHH
Q 001763 876 LLGRWGFLKEAEEFIEQLTFEP----DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNE 951 (1017)
Q Consensus 876 ~l~~~g~~~eA~~~~~~~~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~ 951 (1017)
-||..|++++|...|++....| -+.+|.+++....+.|+.+.|+..++++++++|+++.+...+++.....|++.+
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 8888888888888888753333 245888888887789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCC
Q 001763 952 VNTLRREMREKGV 964 (1017)
Q Consensus 952 a~~~~~~m~~~~~ 964 (1017)
|...++....++.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999998887765
No 75
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.21 E-value=5.8e-09 Score=102.29 Aligned_cols=288 Identities=12% Similarity=0.117 Sum_probs=168.6
Q ss_pred HhcCCHHHHHHHHHHhhccCCCCCcccHHHHHHHhhcccCCCcchhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHH
Q 001763 501 VQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAA 580 (1017)
Q Consensus 501 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A 580 (1017)
.-++++++|+++|-+|.+. .|. ...+.-+|.+.|-+.|..|.|
T Consensus 46 LLs~Q~dKAvdlF~e~l~~--d~~-----------------------------------t~e~~ltLGnLfRsRGEvDRA 88 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQE--DPE-----------------------------------TFEAHLTLGNLFRSRGEVDRA 88 (389)
T ss_pred HhhcCcchHHHHHHHHHhc--Cch-----------------------------------hhHHHHHHHHHHHhcchHHHH
Confidence 3457889999999999873 221 556667899999999999999
Q ss_pred HHHHhcCCCCCchhHHHHHHHHhhCCchHHHHHHHHHHHcCCCCChHHHHHHHHhccCCCccchhhHHHHHHHHhCCCCC
Q 001763 581 HKVLSCMPQRNVVSMNALIAGYAQNNVEDAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFD 660 (1017)
Q Consensus 581 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~ 660 (1017)
+++-+.+.+....+++--..+ .-.|..-+...|-++.|..+|..+.+.+ .-
T Consensus 89 IRiHQ~L~~spdlT~~qr~lA---------------------------l~qL~~Dym~aGl~DRAE~~f~~L~de~--ef 139 (389)
T COG2956 89 IRIHQTLLESPDLTFEQRLLA---------------------------LQQLGRDYMAAGLLDRAEDIFNQLVDEG--EF 139 (389)
T ss_pred HHHHHHHhcCCCCchHHHHHH---------------------------HHHHHHHHHHhhhhhHHHHHHHHHhcch--hh
Confidence 998877653211111110000 0111122223333444444444443322 12
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHhhCCCCCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHH----hHHHHH
Q 001763 661 DDFLHIALLSMYMNSKRNTDARLLFTEFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQA----TFVSVL 736 (1017)
Q Consensus 661 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~----t~~~ll 736 (1017)
-..+...|+.+|-.. .++++|++.-+++...+-.+..+ -|--+.
T Consensus 140 a~~AlqqLl~IYQ~t--------------------------------reW~KAId~A~~L~k~~~q~~~~eIAqfyCELA 187 (389)
T COG2956 140 AEGALQQLLNIYQAT--------------------------------REWEKAIDVAERLVKLGGQTYRVEIAQFYCELA 187 (389)
T ss_pred hHHHHHHHHHHHHHh--------------------------------hHHHHHHHHHHHHHHcCCccchhHHHHHHHHHH
Confidence 233444444444444 45555555555554443333221 133344
Q ss_pred HHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCChh---HHHHHHHHHHHhCCCHH
Q 001763 737 RACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYV---ISWNSMIVGFAKNGYAE 813 (1017)
Q Consensus 737 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~ 813 (1017)
.......+++.|+..+.++...+++ .+.+-..+++++...|+++.|.+.++.+.+.|.. .....+..+|.+.|+.+
T Consensus 188 q~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~ 266 (389)
T COG2956 188 QQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPA 266 (389)
T ss_pred HHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHH
Confidence 4555567788888888888877776 7777778888888888888888888888875553 24567778888888888
Q ss_pred HHHHHHHHHHHCCCCCChHhHHHHHHHc-ccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhh---hccCCHHHHHHH
Q 001763 814 DALKVFHEMKETQAMPDDVTFLGVLTAC-SHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLL---GRWGFLKEAEEF 889 (1017)
Q Consensus 814 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l---~~~g~~~eA~~~ 889 (1017)
+.+..+.++.+....++. -..+...- .+.|.-+....+.+++.+ .|+...+..+++.- ..-|+..+...+
T Consensus 267 ~~~~fL~~~~~~~~g~~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~r----~Pt~~gf~rl~~~~l~daeeg~~k~sL~~ 340 (389)
T COG2956 267 EGLNFLRRAMETNTGADA--ELMLADLIELQEGIDAAQAYLTRQLRR----KPTMRGFHRLMDYHLADAEEGRAKESLDL 340 (389)
T ss_pred HHHHHHHHHHHccCCccH--HHHHHHHHHHhhChHHHHHHHHHHHhh----CCcHHHHHHHHHhhhccccccchhhhHHH
Confidence 888888888884333332 22222222 234433333334444433 78887777777653 233445555555
Q ss_pred HHhC
Q 001763 890 IEQL 893 (1017)
Q Consensus 890 ~~~~ 893 (1017)
+++|
T Consensus 341 lr~m 344 (389)
T COG2956 341 LRDM 344 (389)
T ss_pred HHHH
Confidence 5554
No 76
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.19 E-value=1.8e-07 Score=105.04 Aligned_cols=662 Identities=11% Similarity=0.029 Sum_probs=321.4
Q ss_pred HHHHHHHHHhcCCCC-cchHHHHHHHHHcCCCchhHHHhhhcCCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 001763 176 RQLHCHVIELGFESS-SFCKGALIDMYAKLNNVSDARRVFDGAVD---LDTVSWTSMIAGYVQAGLPEAAFELFEKMIKV 251 (1017)
Q Consensus 176 ~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 251 (1017)
..++..+....+.++ ...|..|...|+..-+...|.+.|+...+ .|..++......|++..+++.|..+.-..-+.
T Consensus 476 ~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk 555 (1238)
T KOG1127|consen 476 LALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK 555 (1238)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh
Confidence 333333444444444 35788888888888888899999987666 45667888999999999999999883332221
Q ss_pred C-CCCChhhHHHHHHHHhccCCHHHHHHHHHhcCC---CCccchHHHHHHHhccCCchHHHHHHHHHHhcCCCCChhhHH
Q 001763 252 G-CVPDQVAFVTVINVCFNLGRLDEARELFAQMQN---PNVVAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLG 327 (1017)
Q Consensus 252 g-~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 327 (1017)
. ...-...|....-.|.+.++...|..-|+...+ .|...|..+..+|...|.+..|.++|.+... ++|+.. |.
T Consensus 556 a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s~-y~ 632 (1238)
T KOG1127|consen 556 APAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLSK-YG 632 (1238)
T ss_pred chHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHhH-HH
Confidence 1 000112233445567788999999999998876 4667889999999999999999999999887 777643 32
Q ss_pred HHHH--HHhcccchhHHHHHHHHHHHhCC------CCchhhhHHHHHHHHccCChhHHHHHHhhcCC-----------CC
Q 001763 328 SVLS--GISSLAALDFGLIVHAEAIKQGL------YSNVYVASSLINMYAKCEKMESAKKVFDSLDE-----------RN 388 (1017)
Q Consensus 328 ~ll~--~~~~~~~~~~a~~~~~~~~~~g~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~ 388 (1017)
..-. .-+..|.+.++...+..++..-- ..-..++-.+...+.-.|-...|...|+.-.+ .+
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~ 712 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSD 712 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 2222 23567777777777776664310 10111111111112222222223333322111 01
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHhhhhcCCCCChhcHHHHHHhhhcccchHhhHHHHHHHHHhcCCchhhHHHHHHHH
Q 001763 389 AVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLATNLYVGNALVDM 468 (1017)
Q Consensus 389 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 468 (1017)
...|-.+. .|..+|-+.. .. .|+......+.. +....+..++.. ++..
T Consensus 713 ~~~Wi~as----------dac~~f~q~e-~~-~vn~h~l~il~~----------------q~e~~~~l~~~d----~l~L 760 (1238)
T KOG1127|consen 713 RLQWIVAS----------DACYIFSQEE-PS-IVNMHYLIILSK----------------QLEKTGALKKND----LLFL 760 (1238)
T ss_pred HHHHHHHh----------HHHHHHHHhc-cc-chHHHHHHHHHH----------------HHHhcccCcchh----HHHH
Confidence 11121111 2222232222 00 122111111111 111111111111 0000
Q ss_pred hhccCChhHHHHHHhhcCCCCcccchhhhHHhHh----c----CCHHHHHHHHHHhhccCCCCCcccHHHHHHHhhcccC
Q 001763 469 YAKSRALEEARKQFERIQNQDNVSWNAIIVGYVQ----E----GDVFEAFNMFRRMNLVGIVPDDVSSASILSACANIQG 540 (1017)
Q Consensus 469 ~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~----~----g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 540 (1017)
-.+|+-.. .+ .+ .+..+|..++..|.+ . .+...|+..+.+.++. ..|..-+-..|...+ |.
T Consensus 761 g~~c~~~h--ls---l~--~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVls--g~ 829 (1238)
T KOG1127|consen 761 GYECGIAH--LS---LA--IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVLS--GI 829 (1238)
T ss_pred HHHHhhHH--HH---Hh--hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHhh--cc
Confidence 00111000 00 00 124556666555443 1 1123455555554432 222222222222221 11
Q ss_pred CCcchhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCCCC---CchhHHHHHHHHhhCCch-HHHHHHHH
Q 001763 541 LPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQR---NVVSMNALIAGYAQNNVE-DAVVLYRG 616 (1017)
Q Consensus 541 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~-~A~~l~~~ 616 (1017)
..-+...|+.+...-..|....+|..+.-.+.+..+++.|...|.....- |.+.|-.+..---..|.. +++.+|..
T Consensus 830 gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 830 GNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred chhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 12222223333332233334444444554555555555555555444321 222222111111111111 22222111
Q ss_pred HHHcCCCCChHHHHHHHHhccCCCccchhhHHHHHHHH--hCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCCc
Q 001763 617 MQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVK--KGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPNPKST 694 (1017)
Q Consensus 617 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 694 (1017)
-- ... .|- -+....+.+-.......|+.++-+..-+.++.
T Consensus 910 s~---------------------------------el~~~~gk-a~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~s---- 951 (1238)
T KOG1127|consen 910 SD---------------------------------ELCSKEGK-AKKFQYWLCATEIHLQNGNIEESINTARKISS---- 951 (1238)
T ss_pred hH---------------------------------Hhhccccc-cchhhHHHHHHHHHHhccchHHHHHHhhhhhh----
Confidence 00 000 010 12233333333344444444433333322221
Q ss_pred eeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHH---HhCC--CCCcchHhH
Q 001763 695 VLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIF---HTGY--DLDEITGSA 769 (1017)
Q Consensus 695 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~--~~~~~~~~~ 769 (1017)
|--.+++... +.+.+..+|........+.+.++.+.....+.+ +..+ ..+...-..
T Consensus 952 ------------------As~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~ 1012 (1238)
T KOG1127|consen 952 ------------------ASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPD 1012 (1238)
T ss_pred ------------------hHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 1122223322 224446778888888888888887777766543 2222 112223334
Q ss_pred HHhHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCChHh-HHHHHHHcccCCcH
Q 001763 770 LIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQ-AMPDDVT-FLGVLTACSHAGRV 847 (1017)
Q Consensus 770 l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~-~~~l~~~~~~~g~~ 847 (1017)
.+..++..|.++.|...+......-...+-..-+.. .-.|+++++++.|++++... -.-|.+. ...++-+-..++.-
T Consensus 1013 ~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k 1091 (1238)
T KOG1127|consen 1013 AGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQK 1091 (1238)
T ss_pred hhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccc
Confidence 667788889999888877655432111111111222 44689999999999998831 1122222 33344445677777
Q ss_pred HHHHHHHHHhhhhcCCCcCchhHHHHHHhh---hccCCHHHHHHHHHhCCCCCCHHHHHH--HH-HHHHhcCCchHHHHH
Q 001763 848 SEGRQIFETMVSCHGIQPRVDHCACMVDLL---GRWGFLKEAEEFIEQLTFEPDSRIWTT--LL-GACGVHRDDIRGRLA 921 (1017)
Q Consensus 848 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l---~~~g~~~eA~~~~~~~~~~p~~~~~~~--ll-~~~~~~g~~~~a~~~ 921 (1017)
+.|....-..... .+|+....-++..++ ..+-...-+++-+.+.+...+. .|.. +. ..+..+|+-......
T Consensus 1092 ~~A~~lLfe~~~l--s~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~-~~~~~ll~e~i~~~~~r~~~vk~~ 1168 (1238)
T KOG1127|consen 1092 NDAQFLLFEVKSL--SKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWF-CWPPGLLKELIYALQGRSVAVKKQ 1168 (1238)
T ss_pred hHHHHHHHHHHHh--CccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHh-ccChhHHHHHHHHHhhhhHHHHHH
Confidence 8888877776652 355655554443332 2222222333333333211000 1111 12 235677888899999
Q ss_pred HHHHHhhCCCCCchHHHHHHHHH
Q 001763 922 AKKLIELEPENPSPYVQLSNIYA 944 (1017)
Q Consensus 922 ~~~~l~~~p~~~~~~~~l~~~y~ 944 (1017)
.++++-.+|.++..+..|..-|+
T Consensus 1169 ~qr~~h~~P~~~~~WslL~vrya 1191 (1238)
T KOG1127|consen 1169 IQRAVHSNPGDPALWSLLSVRYA 1191 (1238)
T ss_pred HHHHHhcCCCChHHHHHHHHHHH
Confidence 99999999999999999985444
No 77
>PF13041 PPR_2: PPR repeat family
Probab=99.19 E-value=3.8e-11 Score=87.67 Aligned_cols=50 Identities=36% Similarity=0.595 Sum_probs=48.6
Q ss_pred CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhc
Q 001763 220 LDTVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFN 269 (1017)
Q Consensus 220 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 269 (1017)
||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999975
No 78
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.18 E-value=3.3e-09 Score=109.39 Aligned_cols=195 Identities=16% Similarity=0.149 Sum_probs=111.5
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhC
Q 001763 732 FVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKN 809 (1017)
Q Consensus 732 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~ 809 (1017)
+..+...+...|++++|...++.+++..+. +...+..++..|...|++++|.+.+++... ++....|..++..+...
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 112 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQ 112 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 344444555555555555555555554433 445555566666666666666666665543 22222555666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCc-CchhHHHHHHhhhccCCHHHHH
Q 001763 810 GYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQP-RVDHCACMVDLLGRWGFLKEAE 887 (1017)
Q Consensus 810 g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~l~~~g~~~eA~ 887 (1017)
|++++|++.+++.++....|.. ..+..+..++...|++++|...|++..+ ..| +...+..+..++...|++++|.
T Consensus 113 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 113 GKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ---IDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred ccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666653222222 3445555666666677777766666655 223 2345556666666677777776
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCC
Q 001763 888 EFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEP 930 (1017)
Q Consensus 888 ~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p 930 (1017)
+.+++. ...| +...+..+...+...|+.+.|....+.+.+..|
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 666654 2222 344555555666667777777777666655543
No 79
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.17 E-value=1.4e-08 Score=103.09 Aligned_cols=275 Identities=13% Similarity=0.128 Sum_probs=193.0
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhC
Q 001763 609 DAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEF 688 (1017)
Q Consensus 609 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 688 (1017)
+|.++..+-.+.+-.| ...|..-..+-...|+.+.+-.++..+.+..-. +...+...........|+++.|+.-.++.
T Consensus 102 qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~-~~l~v~ltrarlll~~~d~~aA~~~v~~l 179 (400)
T COG3071 102 QAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGD-DTLAVELTRARLLLNRRDYPAARENVDQL 179 (400)
T ss_pred HHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCC-chHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 4444444433333222 234455556666778888888887777776322 67778888888999999999999888876
Q ss_pred CC--CCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCH-------HhHHHHHHHHhccCcHHHHHHHHHHHHHhC
Q 001763 689 PN--PKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQ-------ATFVSVLRACAVLSSLRDGGEIHSLIFHTG 759 (1017)
Q Consensus 689 ~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~-------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 759 (1017)
.+ |.++........+|.+.|++.+...++.+|.+.|.--|+ .+|..+++-+...+..+.-+..++..-+.
T Consensus 180 l~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~- 258 (400)
T COG3071 180 LEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK- 258 (400)
T ss_pred HHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-
Confidence 65 677788888899999999999999999999998865553 46777777777777766655555544322
Q ss_pred CCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHH
Q 001763 760 YDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVL 838 (1017)
Q Consensus 760 ~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~ 838 (1017)
...++....+++.-+.+||+.++|.++..+..++...... .....+.+-++.+.=++..++-.+. .|+. ..+..|+
T Consensus 259 lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L-~~~~~~l~~~d~~~l~k~~e~~l~~--h~~~p~L~~tLG 335 (400)
T COG3071 259 LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL-CRLIPRLRPGDPEPLIKAAEKWLKQ--HPEDPLLLSTLG 335 (400)
T ss_pred hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH-HHHHhhcCCCCchHHHHHHHHHHHh--CCCChhHHHHHH
Confidence 2235677778888888888888888888777664433221 2223345556666666666666552 3433 5567777
Q ss_pred HHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHh
Q 001763 839 TACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQ 892 (1017)
Q Consensus 839 ~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~ 892 (1017)
..|.+.+.|.+|.+.|+..++ ..|+.++|.-+.++|.+.|+..+|.+..++
T Consensus 336 ~L~~k~~~w~kA~~~leaAl~---~~~s~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 336 RLALKNKLWGKASEALEAALK---LRPSASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred HHHHHhhHHHHHHHHHHHHHh---cCCChhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 788888888888888887766 678888888888888888888888777655
No 80
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=9.4e-08 Score=96.82 Aligned_cols=261 Identities=10% Similarity=-0.033 Sum_probs=132.6
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHhcCCCCCchhHHHHH-HH--HhhCCch-HHHHHHHHHHHcCCCCChHHHHHHHHh
Q 001763 560 NIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALI-AG--YAQNNVE-DAVVLYRGMQTEGLSPNDITFTSLLDA 635 (1017)
Q Consensus 560 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li-~~--~~~~~~~-~A~~l~~~m~~~g~~p~~~t~~~ll~a 635 (1017)
+.....++.+.|...|+.++|...|++...-|+.+...|= -+ +.+.|.. +--.+-..+.... +-...-|..-+..
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQL 309 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhh
Confidence 8889999999999999999999999988765555544442 11 2233433 3333333333221 0111111111222
Q ss_pred ccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCC--CCCceeehhhhhhcccCCCchHH
Q 001763 636 CDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYEA 713 (1017)
Q Consensus 636 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A 713 (1017)
.-...+++.|..+-++.++.+ |.+...+..-+.++...|+.++|.-.|+.... |-+...|..|+.+|...|++.||
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHH
Confidence 233455666666666666555 45555555556666666666666666655433 44555555566666666666555
Q ss_pred HHHHHHHHHCCCCcCHHhHHHHH-HHHh-ccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhcc
Q 001763 714 LHFYREMRSHNVLPDQATFVSVL-RACA-VLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMA 791 (1017)
Q Consensus 714 ~~~~~~m~~~~~~pd~~t~~~ll-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~ 791 (1017)
.-+-+..... +..+..++.-+. ..|. ....-|+|+.+++..++..
T Consensus 388 ~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-------------------------------- 434 (564)
T KOG1174|consen 388 NALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-------------------------------- 434 (564)
T ss_pred HHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC--------------------------------
Confidence 5444433221 111222222111 1111 1112334444444443333
Q ss_pred CCChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhh
Q 001763 792 ERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVS 859 (1017)
Q Consensus 792 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 859 (1017)
|+.....+.+...+...|++++++.++++.+. ..||....+.|...+...+.+++|...|...+.
T Consensus 435 -P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 435 -PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred -CccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 33333444555555555555555555555555 345555555555555555555555555555543
No 81
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.13 E-value=1.2e-07 Score=106.33 Aligned_cols=554 Identities=12% Similarity=0.028 Sum_probs=303.4
Q ss_pred hhhhHHHHHHHHccCChhHHHHHHhhcCC---CCcchHHHHHHHHHhCCChhHHHHHHHhhhhcC-CCCChhcHHHHHHh
Q 001763 358 VYVASSLINMYAKCEKMESAKKVFDSLDE---RNAVLWNALLGGYSQNCYAHEVVDLFFAMKSSG-FHADDFTYTSILSS 433 (1017)
Q Consensus 358 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a 433 (1017)
...|..|.+.|+..-++..|.+.|+..-+ .+..++-.....|+....+++|..+.-.--+.. ...-..-+...--.
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 45788888999888899999999998765 367789999999999999999999843322210 00011111122223
Q ss_pred hhcccchHhhHHHHHHHHHhcCCchhhHHHHHHHHhhccCChhHHHHHHhhcCCCCcccchh-h--hHHhHhcCCHHHHH
Q 001763 434 CACLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQNQDNVSWNA-I--IVGYVQEGDVFEAF 510 (1017)
Q Consensus 434 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~-l--i~~~~~~g~~~~A~ 510 (1017)
+-+.++...+..-++...+.. +.|...|..+..+|..+|.+..|.++|.+...-++.+|-. . ...-+..|.+.+|+
T Consensus 572 yLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHH
Confidence 445566666666666655543 2366677888888888888888888888776544443322 1 12345577888888
Q ss_pred HHHHHhhccCCCCCcccHHHHHHHhhcccCCCcchhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCC--
Q 001763 511 NMFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMP-- 588 (1017)
Q Consensus 511 ~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~-- 588 (1017)
..+....... .+..+ +... -..++-.+...+.-.|-...|..+|++-.
T Consensus 651 d~l~~ii~~~--s~e~~-----------~q~g-----------------LaE~~ir~akd~~~~gf~~kavd~~eksie~ 700 (1238)
T KOG1127|consen 651 DALGLIIYAF--SLERT-----------GQNG-----------------LAESVIRDAKDSAITGFQKKAVDFFEKSIES 700 (1238)
T ss_pred HHHHHHHHHH--HHHHH-----------hhhh-----------------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 7777655321 00000 0000 11111122222222233333333333221
Q ss_pred ---------CCCchhHHHHHHHHhhCCchHHHHHHHHHHHcCCCCChHHHHHHHHhccCCCcc---c---hhhHHHHHHH
Q 001763 589 ---------QRNVVSMNALIAGYAQNNVEDAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKF---H---LGTQIHCLIV 653 (1017)
Q Consensus 589 ---------~~~~~~~~~li~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~---~---~a~~~~~~~~ 653 (1017)
..+...|-.+-.+ ..+|.... -. .|+......+..-....+.. + .|.+.+-.-+
T Consensus 701 f~~~l~h~~~~~~~~Wi~asda---------c~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl 769 (1238)
T KOG1127|consen 701 FIVSLIHSLQSDRLQWIVASDA---------CYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL 769 (1238)
T ss_pred HHHHHHHhhhhhHHHHHHHhHH---------HHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH
Confidence 1223333333222 22222222 00 11111111111111111111 1 1111111111
Q ss_pred HhCCCCCchHHHHHHHHHHHh----cC----ChHHHHHHHhhCCC--CCCceeehhhhhhcccCCCchHHHHHHHHHHHC
Q 001763 654 KKGLLFDDDFLHIALLSMYMN----SK----RNTDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYEALHFYREMRSH 723 (1017)
Q Consensus 654 ~~~~~p~~~~~~~~l~~~~~~----~g----~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 723 (1017)
+. . .++..+..|+.-|.+ +| +...|+..++.... ..+...||.|+.. ..-|++.-|...|-+-...
T Consensus 770 sl--~-~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s 845 (1238)
T KOG1127|consen 770 SL--A-IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS 845 (1238)
T ss_pred HH--h-hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc
Confidence 11 1 222333333333322 11 22345666655433 3667788877766 5556777777777666654
Q ss_pred CCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhc-----cC---CCh
Q 001763 724 NVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEM-----AE---RNY 795 (1017)
Q Consensus 724 ~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~-----~~---~~~ 795 (1017)
. +....+|..+.-.|....+++.|...+.......|. +...|....-.....|+.-++..+|..- .. ++.
T Consensus 846 e-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f 923 (1238)
T KOG1127|consen 846 E-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKF 923 (1238)
T ss_pred c-ccchhheeccceeEEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchh
Confidence 2 345667777777788888888888888888777765 6666666666666778888888877642 11 333
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--------CCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcC
Q 001763 796 VISWNSMIVGFAKNGYAEDALKVFHEMKET--------QAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPR 866 (1017)
Q Consensus 796 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--------g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~ 866 (1017)
. -|..-.......|++++-+..-+++-.. +-.|+. ..|...+....+.+.+.+|.+...+.+.-...+-+
T Consensus 924 ~-Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d 1002 (1238)
T KOG1127|consen 924 Q-YWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLD 1002 (1238)
T ss_pred h-HHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 5555555556666666654433332211 124555 67777777778888888888877776542222333
Q ss_pred chhHH----HHHHhhhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCc---hHHHH
Q 001763 867 VDHCA----CMVDLLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPS---PYVQL 939 (1017)
Q Consensus 867 ~~~~~----~l~~~l~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~---~~~~l 939 (1017)
...|+ ....+++..|.++.|.......+.+-|..+..+-++. ...|+++.+...|++++.+--++.. ....+
T Consensus 1003 ~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kv 1081 (1238)
T KOG1127|consen 1003 ESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKV 1081 (1238)
T ss_pred hhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHH
Confidence 33444 3345566777788777666665555555555554444 3457888888888888877554443 33444
Q ss_pred HHHHHhcCCcHHHHHHHHHHHH
Q 001763 940 SNIYAALGNWNEVNTLRREMRE 961 (1017)
Q Consensus 940 ~~~y~~~g~~~~a~~~~~~m~~ 961 (1017)
++.....+..+.|....-+...
T Consensus 1082 a~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1082 AVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred HHHHhhcccchHHHHHHHHHHH
Confidence 4555566666777665554443
No 82
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.11 E-value=1.8e-07 Score=92.44 Aligned_cols=319 Identities=13% Similarity=0.059 Sum_probs=222.3
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHhcCCCCCchhHHHHHH---HHhhCCch-HHHHHHHHHHHcCCCCChHHHHHHHHh
Q 001763 560 NIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIA---GYAQNNVE-DAVVLYRGMQTEGLSPNDITFTSLLDA 635 (1017)
Q Consensus 560 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~~~~-~A~~l~~~m~~~g~~p~~~t~~~ll~a 635 (1017)
++.-.--|...+...|++.+|..-|....+.|+..|-++.. .|..-|.. -|+.-|.+.++
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---------------- 100 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---------------- 100 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh----------------
Confidence 44444456666677788888888777777666666655542 24444444 34444444333
Q ss_pred ccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCCceeehhhhhhcccCCCchHHHH
Q 001763 636 CDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPNPKSTVLWTAVISGHAQNDSNYEALH 715 (1017)
Q Consensus 636 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 715 (1017)
.. |+-..+...-+.++.+.|+++.|..-|+.+.. .++ .+|...+|.+
T Consensus 101 -------------------lK--pDF~~ARiQRg~vllK~Gele~A~~DF~~vl~-~~~-----------s~~~~~eaqs 147 (504)
T KOG0624|consen 101 -------------------LK--PDFMAARIQRGVVLLKQGELEQAEADFDQVLQ-HEP-----------SNGLVLEAQS 147 (504)
T ss_pred -------------------cC--ccHHHHHHHhchhhhhcccHHHHHHHHHHHHh-cCC-----------CcchhHHHHH
Confidence 32 44455555666778899999999998888775 111 1122223322
Q ss_pred HHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--C
Q 001763 716 FYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--R 793 (1017)
Q Consensus 716 ~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~ 793 (1017)
-+.... ........+......|+...++.....+++..+- |...+..-.++|...|+...|+.-++...+ .
T Consensus 148 kl~~~~------e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~ 220 (504)
T KOG0624|consen 148 KLALIQ------EHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ 220 (504)
T ss_pred HHHhHH------HHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Confidence 111111 1123445566677889999999999999988876 888999999999999999999988776654 3
Q ss_pred ChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChH-hHHH----------H--HHHcccCCcHHHHHHHHHHhhhh
Q 001763 794 NYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDV-TFLG----------V--LTACSHAGRVSEGRQIFETMVSC 860 (1017)
Q Consensus 794 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~----------l--~~~~~~~g~~~~a~~~~~~m~~~ 860 (1017)
|.......+...+..-|+.+.++.-.++.++ ++||.. +|.. | +......+.|.++++..+++.+
T Consensus 221 DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk- 297 (504)
T KOG0624|consen 221 DNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK- 297 (504)
T ss_pred cchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-
Confidence 3333778888888999999999999999999 789873 3321 1 1124567888888888888876
Q ss_pred cCCCcC-----chhHHHHHHhhhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCC
Q 001763 861 HGIQPR-----VDHCACMVDLLGRWGFLKEAEEFIEQL-TFEPD-SRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENP 933 (1017)
Q Consensus 861 ~~~~p~-----~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~ 933 (1017)
..|. ...+..+..++...|++.||+....++ .+.|| ..++..-..++.....++.|+.-|+++.+.+|+|.
T Consensus 298 --~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 298 --NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred --cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 3444 233455667788899999999888775 57776 55888888888888899999999999999999887
Q ss_pred chHHHH
Q 001763 934 SPYVQL 939 (1017)
Q Consensus 934 ~~~~~l 939 (1017)
.+-..+
T Consensus 376 ~~reGl 381 (504)
T KOG0624|consen 376 RAREGL 381 (504)
T ss_pred HHHHHH
Confidence 765544
No 83
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=7.5e-07 Score=88.48 Aligned_cols=178 Identities=13% Similarity=0.064 Sum_probs=97.3
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHhcCC---CCccchHHHHHHHhccCCchH
Q 001763 230 AGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEARELFAQMQN---PNVVAWNVMISGHAKRGYDAE 306 (1017)
Q Consensus 230 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~ 306 (1017)
.-+....++..|+.+++--...+-+-...+-.-+..++.+.|++++|...+..+.+ ++...+-.|..++.-.|.+.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 34555677777777776655444333333344455667777888888777776553 555666667777777777777
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHhcccchhHHHHHHHHHHHhCCCCchhhhHHHHHHHHccCChhHHHHHHhhcCC
Q 001763 307 AVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFDSLDE 386 (1017)
Q Consensus 307 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 386 (1017)
|..+-.+..+ ++-.-..+....-+.++-++-..++..+...- .---+|..+..-.-.+.+|++++.++..
T Consensus 110 A~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 110 AKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7776554321 22222333344445666666666665554321 1112233333333456677777776654
Q ss_pred C--CcchHHH-HHHHHHhCCChhHHHHHHHhhhh
Q 001763 387 R--NAVLWNA-LLGGYSQNCYAHEVVDLFFAMKS 417 (1017)
Q Consensus 387 ~--~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~ 417 (1017)
. +-...|. |.-+|.+...++-+.+++.-..+
T Consensus 180 dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 180 DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 3 2333333 23345555556655555555443
No 84
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.04 E-value=5.9e-09 Score=110.62 Aligned_cols=217 Identities=13% Similarity=0.113 Sum_probs=166.4
Q ss_pred hccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHH
Q 001763 740 AVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALK 817 (1017)
Q Consensus 740 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 817 (1017)
.+.|++.+|.-.|+..++.+|. +...|--|+......++=..|+..+.+..+ |+......+|+..|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 4566677777777777777766 777777777777777777777777777665 3333366677777777777777887
Q ss_pred HHHHHHHCCCCCChHhHHHHH-----------HHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHH
Q 001763 818 VFHEMKETQAMPDDVTFLGVL-----------TACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEA 886 (1017)
Q Consensus 818 ~~~~m~~~g~~p~~~~~~~l~-----------~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA 886 (1017)
++++=+.. .|.- ..+. ....+........++|-.+....+.+++++.+.+|..+|--.|.+++|
T Consensus 375 ~L~~Wi~~--~p~y---~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 375 MLDKWIRN--KPKY---VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHh--Cccc---hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 77776552 2211 1111 122333445566777877777677778999999999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHc
Q 001763 887 EEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREK 962 (1017)
Q Consensus 887 ~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 962 (1017)
.+.|+.. ..+| |..+|+-|+.........++|+.+|.+++++.|...-+.++||-.|...|.|.||.+.+-.....
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9999985 6788 56699999999988889999999999999999999999999999999999999999987666554
No 85
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=6.6e-09 Score=101.62 Aligned_cols=226 Identities=10% Similarity=0.038 Sum_probs=189.8
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHhhCCC-CCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHH-HHHHHH
Q 001763 662 DFLHIALLSMYMNSKRNTDARLLFTEFPN-PKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFV-SVLRAC 739 (1017)
Q Consensus 662 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~-~ll~~~ 739 (1017)
-.-...++..|.+.|...+|.+.|+.... .+-+.+|-.|-..|.+-.++..|+.+|.+-++. .|-.+|+. ...+.+
T Consensus 223 wwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 223 WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHH
Confidence 33445788999999999999999987655 566788889999999999999999999998874 67777765 456788
Q ss_pred hccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCC---ChhHHHHHHHHHHHhCCCHHHHH
Q 001763 740 AVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAER---NYVISWNSMIVGFAKNGYAEDAL 816 (1017)
Q Consensus 740 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~ 816 (1017)
...++.++|.++++.+.+..+. +++...++...|.-.|+.+-|...+.++..- +.. .|+.+.-+|.-.++++-++
T Consensus 301 eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~spe-Lf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPE-LFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChH-HHhhHHHHHHhhcchhhhH
Confidence 8999999999999999998876 8888889999999999999999999988763 444 7889999999999999999
Q ss_pred HHHHHHHHCCCCCCh--HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC
Q 001763 817 KVFHEMKETQAMPDD--VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL 893 (1017)
Q Consensus 817 ~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~ 893 (1017)
.-|++.+..--+|+. ..|.+|.......|+..-|.+.|+..+. ....+.+.++++..+-.|.|++++|..+++..
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 999999986656765 4677888888899999999999998876 23345677888888888888888888888765
No 86
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.00 E-value=9.7e-07 Score=95.20 Aligned_cols=440 Identities=13% Similarity=0.035 Sum_probs=251.0
Q ss_pred hcccchHhhHHHHHHHHHhcCCchhhHHHHHHHHhhccCChhHHHHHHhhcCC---CCcccchhhhHHhHhcCCHHHHHH
Q 001763 435 ACLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQN---QDNVSWNAIIVGYVQEGDVFEAFN 511 (1017)
Q Consensus 435 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 511 (1017)
...+++..+..+.+.+++ ++.-...+.....-.+...|+.++|......... ++.+.|..+.-.+-...++++|++
T Consensus 18 yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence 345667777777777666 3222333332222234566888888887776655 356789999888888899999999
Q ss_pred HHHHhhccCCCCCcccHHHHHHHhhcccCCCcchhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCCC--
Q 001763 512 MFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQ-- 589 (1017)
Q Consensus 512 ~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~-- 589 (1017)
.|+.... +.|| |..++.-|.-.-...|+++-....-....+
T Consensus 97 cy~nAl~--~~~d-----------------------------------N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~ 139 (700)
T KOG1156|consen 97 CYRNALK--IEKD-----------------------------------NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR 139 (700)
T ss_pred HHHHHHh--cCCC-----------------------------------cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 9999876 4555 555555555555555655554444333332
Q ss_pred -CCchhHHHHHHHHhhCCch-HHHHHHHHHHHcC-CCCChHHHHHHHHh------ccCCCccchhhHHHHHHHHhCCCCC
Q 001763 590 -RNVVSMNALIAGYAQNNVE-DAVVLYRGMQTEG-LSPNDITFTSLLDA------CDGPYKFHLGTQIHCLIVKKGLLFD 660 (1017)
Q Consensus 590 -~~~~~~~~li~~~~~~~~~-~A~~l~~~m~~~g-~~p~~~t~~~ll~a------~~~~~~~~~a~~~~~~~~~~~~~p~ 660 (1017)
.....|..+..++--.|.. .|..+.++..+.. -.|+...+.....- ....|.++.+.+.+......- . +
T Consensus 140 ~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-~-D 217 (700)
T KOG1156|consen 140 PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-V-D 217 (700)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-H-H
Confidence 3445777777776666666 7777777776654 24555544432221 234455555555444333222 1 3
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHhhCCC-CCCceeeh-hhhhhcccCCCchHHH-HHHHHHHHCCCCcCHHhHH-HHH
Q 001763 661 DDFLHIALLSMYMNSKRNTDARLLFTEFPN-PKSTVLWT-AVISGHAQNDSNYEAL-HFYREMRSHNVLPDQATFV-SVL 736 (1017)
Q Consensus 661 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~-~li~~~~~~g~~~~A~-~~~~~m~~~~~~pd~~t~~-~ll 736 (1017)
.......-++.+.+.+++++|..++..... .||...|+ .+..++.+-.+..+++ .+|....+. .|...... .-+
T Consensus 218 kla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlpl 295 (700)
T KOG1156|consen 218 KLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPL 295 (700)
T ss_pred HHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccH
Confidence 444455667788888888888888887665 23333343 3333333333344444 555555442 22211111 111
Q ss_pred HHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHH----HHHHHHhcc-------------CCChhHHH
Q 001763 737 RACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKR----SAQVFDEMA-------------ERNYVISW 799 (1017)
Q Consensus 737 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~----A~~~~~~~~-------------~~~~~~~~ 799 (1017)
+......-.+..-.++...++.|++ .+...+...|-.-.+.+- +..+...+. ++.....|
T Consensus 296 svl~~eel~~~vdkyL~~~l~Kg~p---~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllW 372 (700)
T KOG1156|consen 296 SVLNGEELKEIVDKYLRPLLSKGVP---SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLW 372 (700)
T ss_pred HHhCcchhHHHHHHHHHHHhhcCCC---chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHH
Confidence 1112222222233344455555554 233344444432111110 111111111 12222345
Q ss_pred H--HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHh
Q 001763 800 N--SMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDL 876 (1017)
Q Consensus 800 ~--~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 876 (1017)
. -++..+-..|+++.|+...+..++ -.|.. .-|..-...+.|+|+.++|..+++...+. -.||...-+.-+.-
T Consensus 373 t~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--D~aDR~INsKcAKY 448 (700)
T KOG1156|consen 373 TLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--DTADRAINSKCAKY 448 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cchhHHHHHHHHHH
Confidence 4 577888899999999999999888 47776 46777788999999999999999998772 23343333344555
Q ss_pred hhccCCHHHHHHHHHhCCCCC-CH--------HHHHHHH--HHHHhcCCchHHHHHHH
Q 001763 877 LGRWGFLKEAEEFIEQLTFEP-DS--------RIWTTLL--GACGVHRDDIRGRLAAK 923 (1017)
Q Consensus 877 l~~~g~~~eA~~~~~~~~~~p-~~--------~~~~~ll--~~~~~~g~~~~a~~~~~ 923 (1017)
..|+++.++|.+......-+- +. -.|..+- .++.++|++-.|..-+.
T Consensus 449 mLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh 506 (700)
T KOG1156|consen 449 MLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFH 506 (700)
T ss_pred HHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHh
Confidence 679999999999887653221 11 1355443 34666666655544433
No 87
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.00 E-value=7.6e-08 Score=90.48 Aligned_cols=199 Identities=11% Similarity=0.065 Sum_probs=145.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhC
Q 001763 732 FVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKN 809 (1017)
Q Consensus 732 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~ 809 (1017)
...+.-.|...|+...|+.-++++++.++. +..++..+...|.+.|+.+.|.+.|++..+ |+.-...|....-+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 344555677778888888888888877776 677888888888888888888888887665 33334678888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcC-chhHHHHHHhhhccCCHHHHH
Q 001763 810 GYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPR-VDHCACMVDLLGRWGFLKEAE 887 (1017)
Q Consensus 810 g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~l~~~g~~~eA~ 887 (1017)
|++++|...|++.+....-|.. .||.++.-+-.++|+.+.|.+.|++.++ ..|+ +.....|.......|++-+|.
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHH
Confidence 8888888888888885433333 5777777777788888888888888877 4454 456677888888888888888
Q ss_pred HHHHhCC--CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCc
Q 001763 888 EFIEQLT--FEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPS 934 (1017)
Q Consensus 888 ~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~ 934 (1017)
-+++... ..++.....-.+..-...||.+.+-+.-.++-.+.|...+
T Consensus 194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 194 LYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 8887753 3344443333344566778888888877777788886543
No 88
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.97 E-value=2.2e-08 Score=109.75 Aligned_cols=232 Identities=14% Similarity=0.153 Sum_probs=126.2
Q ss_pred HHHHHHHHhccCCCccchhhHHHHHHHHh-----CCCCCch-HHHHHHHHHHHhcCChHHHHHHHhhCCC----------
Q 001763 627 ITFTSLLDACDGPYKFHLGTQIHCLIVKK-----GLLFDDD-FLHIALLSMYMNSKRNTDARLLFTEFPN---------- 690 (1017)
Q Consensus 627 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------- 690 (1017)
.|+..+...|...|+++.|...++.+++. |..-+.. .....++.+|...+++.+|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35555666677777777777777776654 2111222 2222366777777777777777765442
Q ss_pred CCCceeehhhhhhcccCCCchHHHHHHHHHHHC-----CC-CcCHH-hHHHHHHHHhccCcHHHHHHHHHHHHHh---CC
Q 001763 691 PKSTVLWTAVISGHAQNDSNYEALHFYREMRSH-----NV-LPDQA-TFVSVLRACAVLSSLRDGGEIHSLIFHT---GY 760 (1017)
Q Consensus 691 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~pd~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~ 760 (1017)
|.-..+++.|...|...|++++|..++++..+- |. .|+.. .+..+...|...+.+++|..++....+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 122345566666677777777666666554321 11 12222 2444555666667777776666544321 11
Q ss_pred CCC----cchHhHHHhHHHhcCCHHHHHHHHHhccCC----------ChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-
Q 001763 761 DLD----EITGSALIDMYAKCGDVKRSAQVFDEMAER----------NYVISWNSMIVGFAKNGYAEDALKVFHEMKET- 825 (1017)
Q Consensus 761 ~~~----~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~- 825 (1017)
.++ ..+++.|+..|.+.|++++|.++++++... +...+.+.|...|.+.+++++|.++|.+...-
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 111 245566666666666666666666654321 11124455666666666666666666554321
Q ss_pred ---CC-CCCh-HhHHHHHHHcccCCcHHHHHHHHHHhh
Q 001763 826 ---QA-MPDD-VTFLGVLTACSHAGRVSEGRQIFETMV 858 (1017)
Q Consensus 826 ---g~-~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~ 858 (1017)
|. .|+. .+|.+|+.+|...|++++|.++-+.+.
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 11 2233 355566666666666666666555554
No 89
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.95 E-value=8.8e-06 Score=89.66 Aligned_cols=268 Identities=14% Similarity=0.131 Sum_probs=153.1
Q ss_pred CCcchHHHHHH--HHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHhcCCCCccchHHHHHH
Q 001763 220 LDTVSWTSMIA--GYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEARELFAQMQNPNVVAWNVMISG 297 (1017)
Q Consensus 220 ~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~ 297 (1017)
-|..|-.+|+. -|...|+.+.|.+-.+-.+ +...|..+.++|.+..+++-|.-.+-.|..
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~------------ 785 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKN------------ 785 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhh------------
Confidence 45566666663 4666777777777665543 334677777777777777777655544432
Q ss_pred HhccCCchHHHHHHHHHHhcCCCCChhhHHHHHHHHhcccchhHHHHHHHHHHHhCCCCchhhhHHHHHHHHccCChhHH
Q 001763 298 HAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESA 377 (1017)
Q Consensus 298 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 377 (1017)
... .+.+++..+.|- .+=..+.-.....|.+++|+.++++..+.. .|=..|-..|.+++|
T Consensus 786 ------aRg-aRAlR~a~q~~~----e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA 845 (1416)
T KOG3617|consen 786 ------ARG-ARALRRAQQNGE----EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEA 845 (1416)
T ss_pred ------hhh-HHHHHHHHhCCc----chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHH
Confidence 001 122333333221 111222222345677777777777766542 233456677888888
Q ss_pred HHHHhhcCCC-CcchHHHHHHHHHhCCChhHHHHHHHhhhhcCCCCChhcHHHHHHhhhcccchHhhHHHHHHHHHhcCC
Q 001763 378 KKVFDSLDER-NAVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLA 456 (1017)
Q Consensus 378 ~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~ 456 (1017)
.++-+.-..- =..+|..-..-+-..++.+.|++.|++-... -...+. ++.- +...-++..+. .
T Consensus 846 ~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~h----afev~r-mL~e-----~p~~~e~Yv~~------~ 909 (1416)
T KOG3617|consen 846 FEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVH----AFEVFR-MLKE-----YPKQIEQYVRR------K 909 (1416)
T ss_pred HHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCCh----HHHHHH-HHHh-----ChHHHHHHHHh------c
Confidence 8876542211 1124555556666677888888888764211 111111 1110 11111111111 1
Q ss_pred chhhHHHHHHHHhhccCChhHHHHHHhhcCCCCcccchhhhHHhHhcCCHHHHHHHHHHhhccCCCCCcccHHHHHHHhh
Q 001763 457 TNLYVGNALVDMYAKSRALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACA 536 (1017)
Q Consensus 457 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~ 536 (1017)
.|...|.-....+-..|+++.|+.++....+ |-+++...|-.|+.++|-++-++--
T Consensus 910 ~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-----~fs~VrI~C~qGk~~kAa~iA~esg------------------- 965 (1416)
T KOG3617|consen 910 RDESLYSWWGQYLESVGEMDAALSFYSSAKD-----YFSMVRIKCIQGKTDKAARIAEESG------------------- 965 (1416)
T ss_pred cchHHHHHHHHHHhcccchHHHHHHHHHhhh-----hhhheeeEeeccCchHHHHHHHhcc-------------------
Confidence 2333444444444567888888888776543 6667777777788888777765432
Q ss_pred cccCCCcchhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCC
Q 001763 537 NIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMP 588 (1017)
Q Consensus 537 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~ 588 (1017)
|......|..+|...|++.+|..+|.+..
T Consensus 966 -----------------------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 966 -----------------------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred -----------------------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 56667778999999999999999998764
No 90
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=3.6e-06 Score=89.95 Aligned_cols=432 Identities=13% Similarity=0.099 Sum_probs=241.6
Q ss_pred HHhHhcCCHHHHHHHHHHhhccCCCCCc-ccHHHHHHHhhcccCCCcchhHHHHHhhhCCCCCchHHHHH--HHHHH--H
Q 001763 498 VGYVQEGDVFEAFNMFRRMNLVGIVPDD-VSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSS--LIDMY--V 572 (1017)
Q Consensus 498 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--l~~~y--~ 572 (1017)
.-+.++|++++|+....++...+ ||. ..+.+-+-+....+.++.+..+.. +.+.. .+++. +=.+| -
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~~----~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGAL----LVINSFFFEKAYCEY 90 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcchh----hhcchhhHHHHHHHH
Confidence 44667788899999888888754 544 345555555566666666653322 22211 11111 23344 3
Q ss_pred HcCCHHHHHHHHhcCCCCCchhHHHHHHHHhhCCch-HHHHHHHHHHHcCCCCChHH-HHHHHHhccCCCccchhhHHHH
Q 001763 573 KCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNVE-DAVVLYRGMQTEGLSPNDIT-FTSLLDACDGPYKFHLGTQIHC 650 (1017)
Q Consensus 573 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~-~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~ 650 (1017)
+.+..|+|...++.....+.-.-..-...+-+.+.. +|+.+|+.+.+.+..--..- -..++.+-... .+ .
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~----~ 162 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QV----Q 162 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hH----H
Confidence 678888888888855444432333333344455655 88888888877654433222 22222221110 00 0
Q ss_pred HHHHhCCCC-CchHHHHHHHHHHHhcCChHHHHHHHhhC--------CCCCCc----------eeehhhhhhcccCCCch
Q 001763 651 LIVKKGLLF-DDDFLHIALLSMYMNSKRNTDARLLFTEF--------PNPKST----------VLWTAVISGHAQNDSNY 711 (1017)
Q Consensus 651 ~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~~----------~~~~~li~~~~~~g~~~ 711 (1017)
.+......| ++-..+...+-.+...|+|.+|+++++.. .. .+. ..--.|...+...|+.+
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~-~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLED-EDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcc-cccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 111111112 24445555666777888888888888765 11 111 01113455566778888
Q ss_pred HHHHHHHHHHHCCCCcCHHhHHHH---HHHHhccCcHHH--HHHHH------------HHHHHhCCCCCcchHhHHHhHH
Q 001763 712 EALHFYREMRSHNVLPDQATFVSV---LRACAVLSSLRD--GGEIH------------SLIFHTGYDLDEITGSALIDMY 774 (1017)
Q Consensus 712 ~A~~~~~~m~~~~~~pd~~t~~~l---l~~~~~~~~~~~--a~~~~------------~~~~~~~~~~~~~~~~~l~~~y 774 (1017)
+|.++|...+..+ .+|....... |.+...-.++-. ....+ ..+.+.... ....-++++.+|
T Consensus 242 ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~-~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 242 EASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQ-AIYRNNALLALF 319 (652)
T ss_pred HHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 8888888888765 5554222111 112222222211 11111 111111110 122223444444
Q ss_pred HhcCCHHHHHHHHHhccCCChhHHHHHHHHH-H-HhCCCHHHHHHHHHHHHHCCCCCCh--HhHHHHHHHcccCCcHHHH
Q 001763 775 AKCGDVKRSAQVFDEMAERNYVISWNSMIVG-F-AKNGYAEDALKVFHEMKETQAMPDD--VTFLGVLTACSHAGRVSEG 850 (1017)
Q Consensus 775 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~-~-~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~a 850 (1017)
. +..+.+.++-.+.+...+......++.. + .+...+.+|.+++.+.-+. .|+. +.....+.....+|+++.|
T Consensus 320 t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 320 T--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred h--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHH
Confidence 3 4556666666666653332133333332 2 2333577888888887764 4655 4555666667889999999
Q ss_pred HHHHH--------HhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHH-------HHh-CCCCCC-HHHHHHHHHHHHhcC
Q 001763 851 RQIFE--------TMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEF-------IEQ-LTFEPD-SRIWTTLLGACGVHR 913 (1017)
Q Consensus 851 ~~~~~--------~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~-------~~~-~~~~p~-~~~~~~ll~~~~~~g 913 (1017)
++++. ...+ +.-.+...+.++.++.+.+..+-|..+ +.. +...+. ..+|.-+...-.++|
T Consensus 396 ~~il~~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G 472 (652)
T KOG2376|consen 396 LEILSLFLESWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG 472 (652)
T ss_pred HHHHHHHhhhhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence 99999 4433 333455667788888877765545444 433 222332 224444555555789
Q ss_pred CchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHH
Q 001763 914 DDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRR 957 (1017)
Q Consensus 914 ~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 957 (1017)
+.++|...++.+++.+|++....+.|--.|+... .++|+.+-+
T Consensus 473 ~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~k 515 (652)
T KOG2376|consen 473 NEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLSK 515 (652)
T ss_pred chHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHhh
Confidence 9999999999999999999999999998888764 466666543
No 91
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=1.6e-06 Score=92.60 Aligned_cols=140 Identities=15% Similarity=0.143 Sum_probs=93.4
Q ss_pred CchHHHHHHHHHHHCCCCcCH--HhHHHHHHHHhccCcHHHHHHHHH--------HHHHhCCCCCcchHhHHHhHHHhcC
Q 001763 709 SNYEALHFYREMRSHNVLPDQ--ATFVSVLRACAVLSSLRDGGEIHS--------LIFHTGYDLDEITGSALIDMYAKCG 778 (1017)
Q Consensus 709 ~~~~A~~~~~~m~~~~~~pd~--~t~~~ll~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~y~~~g 778 (1017)
.+.+|.+++...-+. .|+. +.....+......|+++.|.+++. .+.+.+. .+.+-.+++.+|.+.+
T Consensus 356 ~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~ 431 (652)
T KOG2376|consen 356 KHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIK 431 (652)
T ss_pred HHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhcc
Confidence 456666666666553 3443 333344455677888888888887 4444443 4566777888888888
Q ss_pred CHHHHHHHHHhccC---------CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-ChHhHHHHHHHcccCCcHH
Q 001763 779 DVKRSAQVFDEMAE---------RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMP-DDVTFLGVLTACSHAGRVS 848 (1017)
Q Consensus 779 ~~~~A~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~ 848 (1017)
+-+.|..++++... ....+.|-..+..-.++|+.++|..+++++.+. .| |..+...+..+|+.. +++
T Consensus 432 ~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~--n~~d~~~l~~lV~a~~~~-d~e 508 (652)
T KOG2376|consen 432 DNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF--NPNDTDLLVQLVTAYARL-DPE 508 (652)
T ss_pred CCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh--CCchHHHHHHHHHHHHhc-CHH
Confidence 88777777776543 111234556666667889999999999999993 44 557888888888765 466
Q ss_pred HHHHHHH
Q 001763 849 EGRQIFE 855 (1017)
Q Consensus 849 ~a~~~~~ 855 (1017)
.|..+=.
T Consensus 509 ka~~l~k 515 (652)
T KOG2376|consen 509 KAESLSK 515 (652)
T ss_pred HHHHHhh
Confidence 6665533
No 92
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.93 E-value=4.6e-07 Score=89.63 Aligned_cols=299 Identities=11% Similarity=0.052 Sum_probs=217.6
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHhhCCC--CCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHH-HH
Q 001763 659 FDDDFLHIALLSMYMNSKRNTDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFV-SV 735 (1017)
Q Consensus 659 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~-~l 735 (1017)
|.+..-..-++.-+...|++.+|...|....+ |.+-.++..-...|...|+..-|+.-+.+.++ .+||...-. .-
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQR 112 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHh
Confidence 45666667778888889999999999988776 33444444456778888999999988888887 488864322 12
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhCCCCC--cchHh------------HHHhHHHhcCCHHHHHHHHHhccCCC--hhHHH
Q 001763 736 LRACAVLSSLRDGGEIHSLIFHTGYDLD--EITGS------------ALIDMYAKCGDVKRSAQVFDEMAERN--YVISW 799 (1017)
Q Consensus 736 l~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~------------~l~~~y~~~g~~~~A~~~~~~~~~~~--~~~~~ 799 (1017)
...+.+.|.+++|..-|+.+++..+... ..++. ..+..+.-.|+...|+..+..+.+-. ....+
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~ 192 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLR 192 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHH
Confidence 3456789999999999999988776421 12222 23344556789999999999887632 22256
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCch----hHHHH-
Q 001763 800 NSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVD----HCACM- 873 (1017)
Q Consensus 800 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~l- 873 (1017)
..-..+|...|....|+.-++..-+. ..|. .++.-+...+...|+.+.++...+..++ +.|+-. +|-.+
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askL--s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK---ldpdHK~Cf~~YKklk 267 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKL--SQDNTEGHYKISQLLYTVGDAENSLKEIRECLK---LDPDHKLCFPFYKKLK 267 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhc--cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc---cCcchhhHHHHHHHHH
Confidence 66788999999999999888887773 3443 5666667778889999999888887766 666632 23222
Q ss_pred --H------HhhhccCCHHHHHHHHHh-CCCCCCHH--HHHH---HHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHH
Q 001763 874 --V------DLLGRWGFLKEAEEFIEQ-LTFEPDSR--IWTT---LLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQL 939 (1017)
Q Consensus 874 --~------~~l~~~g~~~eA~~~~~~-~~~~p~~~--~~~~---ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l 939 (1017)
+ ....+.+++-++.+.-++ |..+|... .++. +-..++..|++-+|+.....+++.+|+|..++.--
T Consensus 268 Kv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dR 347 (504)
T KOG0624|consen 268 KVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDR 347 (504)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 2 224567777777777766 35666522 3333 23344567899999999999999999999999999
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHcCC
Q 001763 940 SNIYAALGNWNEVNTLRREMREKGV 964 (1017)
Q Consensus 940 ~~~y~~~g~~~~a~~~~~~m~~~~~ 964 (1017)
+..|.....|++|+.-+++..+.+.
T Consensus 348 AeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 348 AEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999988887543
No 93
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.91 E-value=1.6e-05 Score=87.69 Aligned_cols=138 Identities=17% Similarity=0.126 Sum_probs=82.9
Q ss_pred HHHhcCCchhHHHHhcccCCCCchhHHHHHHHHHcCCChhhHHHHHHHHHhC-CC--------CCChhhHHHHHHHhhcC
Q 001763 99 LYAKCGIANLAEKVFDRLEDRDILAWNSILSMYSKRGSFENVFKSFGLLCNR-GG--------VPNGFTFAIVLSACSKS 169 (1017)
Q Consensus 99 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~--------~p~~~t~~~ll~~~~~~ 169 (1017)
.|.--|+.+.|-+....+. +-..|..|.+.+.+..+.+-|.-.+..|... |. .|+ .+=.-+.-.....
T Consensus 737 fyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieL 813 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIEL 813 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHH
Confidence 4455677777766555553 3356888888888888777776666555321 11 122 1111111123456
Q ss_pred CChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHcCCCchhHHHhhhcCCCCC-cchHHHHHHHHHHcCChhHHHHHHHHH
Q 001763 170 MDVSYGRQLHCHVIELGFESSSFCKGALIDMYAKLNNVSDARRVFDGAVDLD-TVSWTSMIAGYVQAGLPEAAFELFEKM 248 (1017)
Q Consensus 170 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m 248 (1017)
|.+++|..+|.+-.+.. -|-..|-..|.+++|.++-+.-.+.. ..||..-..-+-..++.+.|++.|++.
T Consensus 814 gMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred hhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 78888888888777743 34456667788888887765433321 225555566666677788888877763
No 94
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.90 E-value=4.1e-07 Score=100.43 Aligned_cols=302 Identities=10% Similarity=-0.039 Sum_probs=181.0
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHhhCCC--CCCcee---ehhhhhhcccCCCchHHHHHHHHHHHCCCCcCH-HhH
Q 001763 659 FDDDFLHIALLSMYMNSKRNTDARLLFTEFPN--PKSTVL---WTAVISGHAQNDSNYEALHFYREMRSHNVLPDQ-ATF 732 (1017)
Q Consensus 659 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~-~t~ 732 (1017)
|+....+..++..+...|+.++|.+.+..... +.+... .......+...|++++|.+++++..+. .|+. ..+
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~ 80 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLAL 80 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHH
Confidence 56667777777777777777776655554332 222222 222234466778888898888888775 3443 333
Q ss_pred HH---HHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHH
Q 001763 733 VS---VLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFA 807 (1017)
Q Consensus 733 ~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~ 807 (1017)
.. ........+..+.+.+......... .........++..+..+|++++|...+++... |+....+..+...|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~ 159 (355)
T cd05804 81 KLHLGAFGLGDFSGMRDHVARVLPLWAPEN-PDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLE 159 (355)
T ss_pred HHhHHHHHhcccccCchhHHHHHhccCcCC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 31 1111122344444444443311111 11233444566788889999999999988775 333336778888888
Q ss_pred hCCCHHHHHHHHHHHHHCCC-CCCh--HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhH-H--HHHHhhhccC
Q 001763 808 KNGYAEDALKVFHEMKETQA-MPDD--VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHC-A--CMVDLLGRWG 881 (1017)
Q Consensus 808 ~~g~~~~A~~~~~~m~~~g~-~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~--~l~~~l~~~g 881 (1017)
..|++++|+..+++.+.... .|+. ..+..+...+...|++++|+.+|++........+..... + .+...+...|
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 239 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAG 239 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcC
Confidence 99999999999998887421 1222 235567788889999999999999876421111111111 1 2233334444
Q ss_pred CHHHHHHH---HHhC-CCCCC---HHHHHHHHHHHHhcCCchHHHHHHHHHHhhCC---------CCCchHHHHHHHHHh
Q 001763 882 FLKEAEEF---IEQL-TFEPD---SRIWTTLLGACGVHRDDIRGRLAAKKLIELEP---------ENPSPYVQLSNIYAA 945 (1017)
Q Consensus 882 ~~~eA~~~---~~~~-~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p---------~~~~~~~~l~~~y~~ 945 (1017)
..+.+.++ .... +..|+ .........++...|+.+.|....+.+....- .........+.++..
T Consensus 240 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~ 319 (355)
T cd05804 240 HVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA 319 (355)
T ss_pred CCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH
Confidence 33333333 2211 11111 11222444556678888888888877755321 246677889999999
Q ss_pred cCCcHHHHHHHHHHHHcC
Q 001763 946 LGNWNEVNTLRREMREKG 963 (1017)
Q Consensus 946 ~g~~~~a~~~~~~m~~~~ 963 (1017)
.|++++|.+......+.+
T Consensus 320 ~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 320 EGNYATALELLGPVRDDL 337 (355)
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 999999999988777654
No 95
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.89 E-value=4.5e-07 Score=101.02 Aligned_cols=285 Identities=12% Similarity=0.053 Sum_probs=148.2
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC-CCCce-eehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHh-----
Q 001763 668 LLSMYMNSKRNTDARLLFTEFPN-PKSTV-LWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACA----- 740 (1017)
Q Consensus 668 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~----- 740 (1017)
...++...|++++|.+.+++... -.|.. ........+.+.|+.++|..+|+.+++. .||...|...+..|.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcc
Confidence 34555666666777666655433 12222 2334455666667777777777777664 455555554444443
Q ss_pred -ccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHH-HHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHHHHH
Q 001763 741 -VLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVK-RSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKV 818 (1017)
Q Consensus 741 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~-~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 818 (1017)
...+.+.-..+++.+...-+..+..-...| .+..-.++. .+...+..+..++++..+..+-..|....+.+-..++
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L--~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPL--DFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhc--ccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHH
Confidence 112455555666655544433222111111 111111222 2333444555566664455555555544444444444
Q ss_pred HHHHHHC----C----------CCCCh--HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcC-chhHHHHHHhhhccC
Q 001763 819 FHEMKET----Q----------AMPDD--VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPR-VDHCACMVDLLGRWG 881 (1017)
Q Consensus 819 ~~~m~~~----g----------~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~l~~~g 881 (1017)
+.+.... + -.|.. .++..+...|.+.|++++|+++.++.++ ..|+ ++-|..-..+|-+.|
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCC
Confidence 4444322 0 01222 2344555566677777777777777666 4555 456666667777777
Q ss_pred CHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCc----------hHHHHHHHHHhcCCc
Q 001763 882 FLKEAEEFIEQLT-FEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPS----------PYVQLSNIYAALGNW 949 (1017)
Q Consensus 882 ~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~----------~~~~l~~~y~~~g~~ 949 (1017)
++++|.+.++... ..+ |..+-+-....+.+.|+++.|+..+......+- ++. ...-.|..|.+.|++
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~-~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV-DPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC-CcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 7777777776653 333 222222233344566777777666665544332 111 113456677788888
Q ss_pred HHHHHHHHHHH
Q 001763 950 NEVNTLRREMR 960 (1017)
Q Consensus 950 ~~a~~~~~~m~ 960 (1017)
..|++.+..+.
T Consensus 322 ~~ALk~~~~v~ 332 (517)
T PF12569_consen 322 GLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHHH
Confidence 88776655444
No 96
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=2.8e-07 Score=97.34 Aligned_cols=375 Identities=15% Similarity=0.104 Sum_probs=222.7
Q ss_pred HHHHHHcCCHHHHHHHHhcCCC---CCchhHHHHHHHHhhCCch-HHHHHHHHHHHcCCCCCh-HHHHHHHHhccCCCcc
Q 001763 568 IDMYVKCGFIGAAHKVLSCMPQ---RNVVSMNALIAGYAQNNVE-DAVVLYRGMQTEGLSPND-ITFTSLLDACDGPYKF 642 (1017)
Q Consensus 568 ~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~-~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~ 642 (1017)
.++....|+++.|...|..... +|-+.|.-=..+|+..|.. +|++=-.+-++ +.|+- -.|.-.-.+....|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccH
Confidence 3556678999999999987653 4667777778888888877 88876655554 56764 5788888888889999
Q ss_pred chhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHh------hCCC-CCC-----ceeehhhhhh-------
Q 001763 643 HLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFT------EFPN-PKS-----TVLWTAVISG------- 703 (1017)
Q Consensus 643 ~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~------~~~~-~~~-----~~~~~~li~~------- 703 (1017)
++|...++.-++.. |.+......|.+++.... ++-+.|. .... |.. ...|..++..
T Consensus 87 ~eA~~ay~~GL~~d--~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~ 161 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD--PSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTS 161 (539)
T ss_pred HHHHHHHHHHhhcC--CchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHh
Confidence 99999999888877 788888888888882110 1111111 0000 000 0011111111
Q ss_pred ---cccCCCchHHHHHHHH-----HHHC-------CCCc------------C----------HHhHHHHHHHHhccCcHH
Q 001763 704 ---HAQNDSNYEALHFYRE-----MRSH-------NVLP------------D----------QATFVSVLRACAVLSSLR 746 (1017)
Q Consensus 704 ---~~~~g~~~~A~~~~~~-----m~~~-------~~~p------------d----------~~t~~~ll~~~~~~~~~~ 746 (1017)
|....+...|.-.+.. +... +..| | ..-...+.++..+..+++
T Consensus 162 l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~ 241 (539)
T KOG0548|consen 162 LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFE 241 (539)
T ss_pred hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHH
Confidence 1111111111110000 0000 0111 0 011334555555556666
Q ss_pred HHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCChh---------HHHHHHHHHHHhCCCHHHHHH
Q 001763 747 DGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYV---------ISWNSMIVGFAKNGYAEDALK 817 (1017)
Q Consensus 747 ~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~---------~~~~~l~~~~~~~g~~~~A~~ 817 (1017)
.+.+-+...++.. . +..-++....+|...|.+.+.+..-+...+.+.. .+..-+..+|.+.++++.|+.
T Consensus 242 ~a~q~y~~a~el~-~-~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~ 319 (539)
T KOG0548|consen 242 TAIQHYAKALELA-T-DITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIK 319 (539)
T ss_pred HHHHHHHHHHhHh-h-hhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHH
Confidence 6666666666655 2 5555556666666666666665555554443322 111223445556667777777
Q ss_pred HHHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchh-HHHHHHhhhccCCHHHHHHHHHhC-CC
Q 001763 818 VFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDH-CACMVDLLGRWGFLKEAEEFIEQL-TF 895 (1017)
Q Consensus 818 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-~~~l~~~l~~~g~~~eA~~~~~~~-~~ 895 (1017)
.|++.+.....||..+ +....+++....+...- +.|.... --.-...+-+.|++.+|++.+.++ ..
T Consensus 320 ~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~---~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr 387 (539)
T KOG0548|consen 320 YYQKALTEHRTPDLLS---------KLKEAEKALKEAERKAY---INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR 387 (539)
T ss_pred HHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHh---hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 7777666444443221 12233444443333322 3343211 111255567888899998888875 34
Q ss_pred CC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcC
Q 001763 896 EP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKG 963 (1017)
Q Consensus 896 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 963 (1017)
.| |...|.+...++...|++..|..-+++.++++|++...|..-+.++....+|++|.+.+.+-.+..
T Consensus 388 ~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 388 DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56 555777777777788999999999999999999999999999999999999999988887666554
No 97
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.84 E-value=1.6e-06 Score=96.61 Aligned_cols=431 Identities=15% Similarity=0.132 Sum_probs=239.7
Q ss_pred HHhhccCChhHHHHHHhhcCC--CCcccc-hhhhHHhHhcCCHHHHHHHHHHhhccCCCCCcccHHHHHHHhhcccCCCc
Q 001763 467 DMYAKSRALEEARKQFERIQN--QDNVSW-NAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQ 543 (1017)
Q Consensus 467 ~~~~~~g~~~~A~~~f~~~~~--~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 543 (1017)
..+...|++++|.+.++.... .|..+| ......+.+.|+.++|..+|+.+++. .||...|-..+..|.....
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~--- 86 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQL--- 86 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhc---
Confidence 345677888888888877543 344443 44556777888888888888888875 5676665555544431111
Q ss_pred chhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCCC--CCchhHHHHHHHHhhCCch---HHHHHHHHHH
Q 001763 544 GEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQ--RNVVSMNALIAGYAQNNVE---DAVVLYRGMQ 618 (1017)
Q Consensus 544 ~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~---~A~~l~~~m~ 618 (1017)
++. ....+.-.++++++.. |.......+.-.+.. |.. .+...+..+.
T Consensus 87 -----------~~~----------------~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~-g~~F~~~~~~yl~~~l 138 (517)
T PF12569_consen 87 -----------QLS----------------DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLE-GDEFKERLDEYLRPQL 138 (517)
T ss_pred -----------ccc----------------cccHHHHHHHHHHHHHhCccccchhHhhcccCC-HHHHHHHHHHHHHHHH
Confidence 000 0112222333333221 111111111111111 222 4555666777
Q ss_pred HcCCCCChHHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCCceeeh
Q 001763 619 TEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPNPKSTVLWT 698 (1017)
Q Consensus 619 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 698 (1017)
.+|+++--.....+ +..........+++...... +..++.+.... .....+|....|.
T Consensus 139 ~KgvPslF~~lk~L---y~d~~K~~~i~~l~~~~~~~----------------l~~~~~~~~~~---~~~~~~p~~~lw~ 196 (517)
T PF12569_consen 139 RKGVPSLFSNLKPL---YKDPEKAAIIESLVEEYVNS----------------LESNGSFSNGD---DEEKEPPSTLLWT 196 (517)
T ss_pred hcCCchHHHHHHHH---HcChhHHHHHHHHHHHHHHh----------------hcccCCCCCcc---ccccCCchHHHHH
Confidence 77765433333332 22222222222221111110 00011110000 1112245555564
Q ss_pred --hhhhhcccCCCchHHHHHHHHHHHCCCCcC-HHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHH
Q 001763 699 --AVISGHAQNDSNYEALHFYREMRSHNVLPD-QATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYA 775 (1017)
Q Consensus 699 --~li~~~~~~g~~~~A~~~~~~m~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~ 775 (1017)
-+...|-..|++++|++++++.+++ .|+ ...|..-...+-+.|++++|....+.+...+.. |..+-+-.+..+.
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~L 273 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHH
Confidence 4567788899999999999999986 576 455777788999999999999999999999887 8888899999999
Q ss_pred hcCCHHHHHHHHHhccCCCh---------hHHHH--HHHHHHHhCCCHHHHHHHHHHHHHC--CCCCCh-----------
Q 001763 776 KCGDVKRSAQVFDEMAERNY---------VISWN--SMIVGFAKNGYAEDALKVFHEMKET--QAMPDD----------- 831 (1017)
Q Consensus 776 ~~g~~~~A~~~~~~~~~~~~---------~~~~~--~l~~~~~~~g~~~~A~~~~~~m~~~--g~~p~~----------- 831 (1017)
++|++++|.+++.....++. .+.|. ..+.+|.+.|++..|++.|..+.+. .+.-|.
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~ 353 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKM 353 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhc
Confidence 99999999999988776542 14675 4577899999999999877766542 122222
Q ss_pred --HhHHHHHHHcccCCc-------HHHHHHHHHHhhhhcCCCcCchh---HHHHH-----Hhh------hccCCHHHHHH
Q 001763 832 --VTFLGVLTACSHAGR-------VSEGRQIFETMVSCHGIQPRVDH---CACMV-----DLL------GRWGFLKEAEE 888 (1017)
Q Consensus 832 --~~~~~l~~~~~~~g~-------~~~a~~~~~~m~~~~~~~p~~~~---~~~l~-----~~l------~~~g~~~eA~~ 888 (1017)
.+|..++...-+... ...|+++|-.+-+.......... ...+- .+. .+....+++.+
T Consensus 354 t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~ 433 (517)
T PF12569_consen 354 TLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEK 433 (517)
T ss_pred cHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 233334433221111 13445555554331111110000 00000 000 01111111111
Q ss_pred HHHh--------------C-CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHH
Q 001763 889 FIEQ--------------L-TFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVN 953 (1017)
Q Consensus 889 ~~~~--------------~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~ 953 (1017)
.-.+ . +...|......-+ .....=+++|.+.++-+++..|++...|..--.+|.+.|++--|+
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~GekL--~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaL 511 (517)
T PF12569_consen 434 AAKKEPKKQQNKSKKKEKVEPKKKDDDPLGEKL--LKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLAL 511 (517)
T ss_pred HHhhhhhhhhccccccccccCCcCCCCccHHHH--hcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHH
Confidence 1100 0 1112222221111 112234578999999999999999999999999999999999888
Q ss_pred HHHH
Q 001763 954 TLRR 957 (1017)
Q Consensus 954 ~~~~ 957 (1017)
+..+
T Consensus 512 qaL~ 515 (517)
T PF12569_consen 512 QALK 515 (517)
T ss_pred HHHH
Confidence 7654
No 98
>PLN02789 farnesyltranstransferase
Probab=98.81 E-value=4.8e-07 Score=95.15 Aligned_cols=200 Identities=9% Similarity=0.016 Sum_probs=147.9
Q ss_pred cCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcC-CHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCH--HHHH
Q 001763 742 LSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCG-DVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYA--EDAL 816 (1017)
Q Consensus 742 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g-~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~--~~A~ 816 (1017)
.+..++|....+.+++..+. +..+|+....++.+.| ++++|+..++++.. +....+|+.....+.+.|+. ++++
T Consensus 50 ~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHH
Confidence 45667788888888887776 6677777777787877 57889998888775 33223788766666666653 6788
Q ss_pred HHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCc-CchhHHHHHHhhhcc---CCH----HHHH
Q 001763 817 KVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQP-RVDHCACMVDLLGRW---GFL----KEAE 887 (1017)
Q Consensus 817 ~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~l~~~---g~~----~eA~ 887 (1017)
+.++++++ ..|+. .++.....++.+.|+++++++.++++++ ..| +...|+....++.+. |.+ ++++
T Consensus 129 ~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~---~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 129 EFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE---EDVRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HCCCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 88989988 56755 6788888888888999999999999987 333 345565555554443 323 4677
Q ss_pred HHHHh-CCCCC-CHHHHHHHHHHHHhc----CCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 001763 888 EFIEQ-LTFEP-DSRIWTTLLGACGVH----RDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALG 947 (1017)
Q Consensus 888 ~~~~~-~~~~p-~~~~~~~ll~~~~~~----g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g 947 (1017)
++..+ +...| |...|..+.+.+..+ +....+...+.++++.+|+++.++..|+++|+...
T Consensus 204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~ 269 (320)
T PLN02789 204 KYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGL 269 (320)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhh
Confidence 77744 45677 556999999998774 34466888899999999999999999999999743
No 99
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=3.3e-06 Score=89.46 Aligned_cols=236 Identities=13% Similarity=0.055 Sum_probs=162.5
Q ss_pred hhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhH-HHHHHHHhccCcHHHHHHHHHHHHHhCCCC------CcchHhHH
Q 001763 698 TAVISGHAQNDSNYEALHFYREMRSHNVLPDQATF-VSVLRACAVLSSLRDGGEIHSLIFHTGYDL------DEITGSAL 770 (1017)
Q Consensus 698 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l 770 (1017)
..++.+..+..+++.|++.+....+.. ...+| +....++...|.+.+....-+..++.|... -......+
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 345666667777778888887777643 33443 334446677777766666555555444331 01122235
Q ss_pred HhHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHH
Q 001763 771 IDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSE 849 (1017)
Q Consensus 771 ~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~ 849 (1017)
+..|.+.|+++.|+..|.+...+-.. -....+....++++...+...- +.|+. .-...-++.+.+.|++..
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt------~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRT------PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcC------HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHH
Confidence 66888889999999999875542111 1112233455666666665555 45665 233444777889999999
Q ss_pred HHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCchHHHHHHHHHHh
Q 001763 850 GRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL-TFEPDSR-IWTTLLGACGVHRDDIRGRLAAKKLIE 927 (1017)
Q Consensus 850 a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~l~ 927 (1017)
|+..|.++++. .+-|...|++..-+|.+.|.+.+|++-.+.. ...|+.. .|.--+.++....+++.|..+|.++++
T Consensus 377 Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 377 AVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999872 2335667999999999999999999877664 4667654 666666777778899999999999999
Q ss_pred hCCCCCchHHHHHHHHHhc
Q 001763 928 LEPENPSPYVQLSNIYAAL 946 (1017)
Q Consensus 928 ~~p~~~~~~~~l~~~y~~~ 946 (1017)
.+|++..+...+...+...
T Consensus 455 ~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 455 LDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred cCchhHHHHHHHHHHHHHh
Confidence 9999999998888888864
No 100
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.78 E-value=2.4e-07 Score=95.28 Aligned_cols=180 Identities=9% Similarity=0.057 Sum_probs=125.7
Q ss_pred CcchHhHHHhHHHhcCCHHHHHHHHHhccC--CCh---hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChH----h
Q 001763 763 DEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNY---VISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDV----T 833 (1017)
Q Consensus 763 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~ 833 (1017)
....+..++..|.+.|++++|...|+++.. |+. ...|..++.++...|++++|+..++++++ ..|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHHH
Confidence 456677788888888888888888887765 221 13667788888888888888888888887 345432 4
Q ss_pred HHHHHHHcccC--------CcHHHHHHHHHHhhhhcCCCcCchhH-HHHHHhhhccCCHHHHHHHHHhCCCCCCHHHHHH
Q 001763 834 FLGVLTACSHA--------GRVSEGRQIFETMVSCHGIQPRVDHC-ACMVDLLGRWGFLKEAEEFIEQLTFEPDSRIWTT 904 (1017)
Q Consensus 834 ~~~l~~~~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~~~-~~l~~~l~~~g~~~eA~~~~~~~~~~p~~~~~~~ 904 (1017)
+..+..++... |++++|.+.|+.+.+. .|+.... ..+.. .+...... . .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~----~~~~~~~~---~--------~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKR----MDYLRNRL---A--------GKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHH----HHHHHHHH---H--------HHHHH
Confidence 55556666554 7788888888888763 3433211 11110 00111100 0 01234
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhhCCCC---CchHHHHHHHHHhcCCcHHHHHHHHHHHHc
Q 001763 905 LLGACGVHRDDIRGRLAAKKLIELEPEN---PSPYVQLSNIYAALGNWNEVNTLRREMREK 962 (1017)
Q Consensus 905 ll~~~~~~g~~~~a~~~~~~~l~~~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 962 (1017)
+...+...|+.+.|+..++++++..|++ +.++..++.+|...|++++|.+.++.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5566778899999999999999998765 478999999999999999999999887764
No 101
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=1.8e-07 Score=99.68 Aligned_cols=214 Identities=15% Similarity=0.147 Sum_probs=137.2
Q ss_pred CccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCC--CCCceeehhhhhhcccCCCchHHHHHH
Q 001763 640 YKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYEALHFY 717 (1017)
Q Consensus 640 ~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~ 717 (1017)
|++.+|.-.|+.+++.+ |.+.+++..|+......++-..|+..+++..+ |.|..+.-+|...|...|.-.+|+..+
T Consensus 299 G~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L 376 (579)
T KOG1125|consen 299 GDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKML 376 (579)
T ss_pred CCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 33444444444444444 45555555555555555555555555555443 445555555555555555555555555
Q ss_pred HHHHHCCCCcCHHhHHHH------H--HHHhccCcHHHHHHHHHHH-HHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHH
Q 001763 718 REMRSHNVLPDQATFVSV------L--RACAVLSSLRDGGEIHSLI-FHTGYDLDEITGSALIDMYAKCGDVKRSAQVFD 788 (1017)
Q Consensus 718 ~~m~~~~~~pd~~t~~~l------l--~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~ 788 (1017)
+.-+... |.......- . +.......+....++|-.+ ...+-..|+.++..|+-+|--.|+++.|++.|+
T Consensus 377 ~~Wi~~~--p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~ 454 (579)
T KOG1125|consen 377 DKWIRNK--PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFE 454 (579)
T ss_pred HHHHHhC--ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHH
Confidence 5543321 100000000 0 0111122233344444433 444445789999999999999999999999999
Q ss_pred hccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChH-hHHHHHHHcccCCcHHHHHHHHHHhhh
Q 001763 789 EMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDV-TFLGVLTACSHAGRVSEGRQIFETMVS 859 (1017)
Q Consensus 789 ~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~ 859 (1017)
.... |+....||-++..++...+.++|+..|++.++ ++|.-+ ....|+-.|...|.+.||.+.|-.++.
T Consensus 455 ~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 455 AALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 8875 55556999999999999999999999999999 789873 555677889999999999999888765
No 102
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=4.9e-07 Score=87.63 Aligned_cols=276 Identities=13% Similarity=0.122 Sum_probs=187.7
Q ss_pred HHHhcCChHHHHHHHhhCCC--CCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHH-HHHHhccCcHHH
Q 001763 671 MYMNSKRNTDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSV-LRACAVLSSLRD 747 (1017)
Q Consensus 671 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~l-l~~~~~~~~~~~ 747 (1017)
.+.+-.++++|++++....+ |++....+.|..+|....++.+|...|+++-.. .|...-|..- ..++.+.+.+..
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~AD 96 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYAD 96 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHH
Confidence 34566677777777665444 456677777888888888888888888887663 4544333211 233445566667
Q ss_pred HHHHHHHHHHhCCCCCcchHhHHH----hHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 001763 748 GGEIHSLIFHTGYDLDEITGSALI----DMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMK 823 (1017)
Q Consensus 748 a~~~~~~~~~~~~~~~~~~~~~l~----~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 823 (1017)
|.++...+.+. ....+..+ -.....|++-.+..+.++.+..+...+.+.......+.|++++|++-|+..+
T Consensus 97 ALrV~~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAl 171 (459)
T KOG4340|consen 97 ALRVAFLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAAL 171 (459)
T ss_pred HHHHHHHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHH
Confidence 77776665432 11222211 2233567888888888888864444366677777788899999999999888
Q ss_pred H-CCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCc---------------------hhHHHHH-------
Q 001763 824 E-TQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRV---------------------DHCACMV------- 874 (1017)
Q Consensus 824 ~-~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~---------------------~~~~~l~------- 874 (1017)
+ .|+.|- ..|+ +.-+..+.|+++.|+++...+++ .|++..+ -|-+.++
T Consensus 172 qvsGyqpl-lAYn-iALaHy~~~qyasALk~iSEIie-RG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa 248 (459)
T KOG4340|consen 172 QVSGYQPL-LAYN-LALAHYSSRQYASALKHISEIIE-RGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA 248 (459)
T ss_pred hhcCCCch-hHHH-HHHHHHhhhhHHHHHHHHHHHHH-hhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence 8 455553 3343 44456778899999998888876 4544221 1223333
Q ss_pred HhhhccCCHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcH
Q 001763 875 DLLGRWGFLKEAEEFIEQLTF----EPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWN 950 (1017)
Q Consensus 875 ~~l~~~g~~~eA~~~~~~~~~----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~ 950 (1017)
..+-+.|+++.|.+.+..||. +.|+++..++.- ....++.-.+.+-+.-+++++|--++.+-++.-+|+++.-++
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al-~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~ 327 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQAL-MNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFD 327 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHH-hcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHh
Confidence 345788999999999999973 457777766542 234567777777788899999988899999999999999999
Q ss_pred HHHHHHH
Q 001763 951 EVNTLRR 957 (1017)
Q Consensus 951 ~a~~~~~ 957 (1017)
-|..+..
T Consensus 328 lAADvLA 334 (459)
T KOG4340|consen 328 LAADVLA 334 (459)
T ss_pred HHHHHHh
Confidence 9988764
No 103
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.70 E-value=5.7e-06 Score=91.33 Aligned_cols=270 Identities=12% Similarity=0.023 Sum_probs=177.0
Q ss_pred CCceeehhhhhhcccCCCchHHHHHHHHHHHCCC-CcCHHhHHH-HHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHh-
Q 001763 692 KSTVLWTAVISGHAQNDSNYEALHFYREMRSHNV-LPDQATFVS-VLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGS- 768 (1017)
Q Consensus 692 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~pd~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~- 768 (1017)
.....|..+...+...|+.+++...+.+..+... .++...... ....+...|++++|...++.+++..+. +...+.
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~ 82 (355)
T cd05804 4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL 82 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH
Confidence 4455666777777778888888777777655321 223322222 233457789999999999999988765 444444
Q ss_pred --HHHhHHHhcCCHHHHHHHHHhccCC--ChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHccc
Q 001763 769 --ALIDMYAKCGDVKRSAQVFDEMAER--NYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSH 843 (1017)
Q Consensus 769 --~l~~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~ 843 (1017)
.+.......|..+.+.+.++..... +....+..+...+...|++++|++.+++.++ ..|+. ..+..+..+|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE--LNPDDAWAVHAVAHVLEM 160 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCcHHHHHHHHHHHH
Confidence 2222223356667777777653332 2222344566788999999999999999999 45765 567888889999
Q ss_pred CCcHHHHHHHHHHhhhhcCCCcCc--hhHHHHHHhhhccCCHHHHHHHHHhCC-CCC--CHHHHH----HHHHHHHhcCC
Q 001763 844 AGRVSEGRQIFETMVSCHGIQPRV--DHCACMVDLLGRWGFLKEAEEFIEQLT-FEP--DSRIWT----TLLGACGVHRD 914 (1017)
Q Consensus 844 ~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~l~~~l~~~g~~~eA~~~~~~~~-~~p--~~~~~~----~ll~~~~~~g~ 914 (1017)
.|++++|+..+++..+.....|.. ..|..+...+...|++++|.+.+++.. ..| ...... .++.-....|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 999999999999988733222332 235578889999999999999999852 233 222211 23344445665
Q ss_pred chHHHHH---HHHHHhhCCC--CCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCC
Q 001763 915 DIRGRLA---AKKLIELEPE--NPSPYVQLSNIYAALGNWNEVNTLRREMREKGV 964 (1017)
Q Consensus 915 ~~~a~~~---~~~~l~~~p~--~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 964 (1017)
.+.+... ......-.|. ....-.+.+..+...|++++|.++.+.++....
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~ 295 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRAS 295 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 5544443 2221111122 223334678888999999999999998876543
No 104
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.68 E-value=7e-07 Score=87.48 Aligned_cols=148 Identities=7% Similarity=0.051 Sum_probs=109.2
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCC
Q 001763 803 IVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGF 882 (1017)
Q Consensus 803 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~ 882 (1017)
+..|...|+++......+.+.. |. ..+...++.++++..++..++ .-+.+.+.|..+..+|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 4467777777765444322211 21 023346667777777777766 234456778888888888888
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCC--chHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHH
Q 001763 883 LKEAEEFIEQL-TFEP-DSRIWTTLLGA-CGVHRD--DIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRR 957 (1017)
Q Consensus 883 ~~eA~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g~--~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 957 (1017)
+++|.+.+++. ...| +..+|..+..+ +...|+ .++|...++++++.+|+++.++.+||..+...|++++|...|+
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888888875 4566 55688888876 456676 5999999999999999999999999999999999999999999
Q ss_pred HHHHcCC
Q 001763 958 EMREKGV 964 (1017)
Q Consensus 958 ~m~~~~~ 964 (1017)
++.+...
T Consensus 169 ~aL~l~~ 175 (198)
T PRK10370 169 KVLDLNS 175 (198)
T ss_pred HHHhhCC
Confidence 9887543
No 105
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.68 E-value=2.1e-07 Score=86.19 Aligned_cols=122 Identities=12% Similarity=-0.000 Sum_probs=89.2
Q ss_pred HHHHHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCc-CchhHHHHHHhhhccCCHHHHHHHHHhC-
Q 001763 816 LKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQP-RVDHCACMVDLLGRWGFLKEAEEFIEQL- 893 (1017)
Q Consensus 816 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~l~~~g~~~eA~~~~~~~- 893 (1017)
..++++.++ +.|+. +..+..++...|++++|...|+..+. +.| +...|..+..++.+.|++++|+..+++.
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 355666666 45664 44556667778888888888888766 444 4556777777778888888888887775
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 001763 894 TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYA 944 (1017)
Q Consensus 894 ~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~ 944 (1017)
...| ++..|..++.++...|+.++|+..+++++++.|+++..+.+++++..
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 3455 55677778888888888888888888888888888888887776644
No 106
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=2.6e-05 Score=75.97 Aligned_cols=280 Identities=12% Similarity=0.038 Sum_probs=169.1
Q ss_pred HHhcCChHHHHHHHhhCCCCCCceeehhhhhhcccCCCchHHHHHHHHHHHC-CCCcCHHhHHHHHHHHhccCcHHHHHH
Q 001763 672 YMNSKRNTDARLLFTEFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSH-NVLPDQATFVSVLRACAVLSSLRDGGE 750 (1017)
Q Consensus 672 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~pd~~t~~~ll~~~~~~~~~~~a~~ 750 (1017)
....+++..++.+.++.+...+..+.+.......+.|++++|++-|+...+- |+.| ...|+..+ +..+.+++..|..
T Consensus 122 kYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk 199 (459)
T KOG4340|consen 122 KYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALK 199 (459)
T ss_pred hcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHH
Confidence 3345677777777777775455666666677777888888888888887764 4444 34454443 4456778888888
Q ss_pred HHHHHHHhCCCCCcc---------------------hHhHH-------HhHHHhcCCHHHHHHHHHhccC-----CChhH
Q 001763 751 IHSLIFHTGYDLDEI---------------------TGSAL-------IDMYAKCGDVKRSAQVFDEMAE-----RNYVI 797 (1017)
Q Consensus 751 ~~~~~~~~~~~~~~~---------------------~~~~l-------~~~y~~~g~~~~A~~~~~~~~~-----~~~~~ 797 (1017)
...++++.|+...+. +-+.+ .-.+.+.|+++.|.+.+-.|+- .|++
T Consensus 200 ~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPv- 278 (459)
T KOG4340|consen 200 HISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPV- 278 (459)
T ss_pred HHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCch-
Confidence 888887766542211 11223 3445678999999999999975 3555
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHh
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPD-DVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDL 876 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 876 (1017)
+...+.-.- ..|++.+..+-+.-+++. .|- ..||..++-.|++..-++-|..++-.-.. +-..--.+-...+.++
T Consensus 279 TLHN~Al~n-~~~~p~~g~~KLqFLL~~--nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~-lTyk~L~~Yly~LLda 354 (459)
T KOG4340|consen 279 TLHNQALMN-MDARPTEGFEKLQFLLQQ--NPFPPETFANLLLLYCKNEYFDLAADVLAENAH-LTYKFLTPYLYDLLDA 354 (459)
T ss_pred hhhHHHHhc-ccCCccccHHHHHHHHhc--CCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcc-hhHHHhhHHHHHHHHH
Confidence 555544332 345666666666666664 553 37999999999999988888877654211 0000001111233444
Q ss_pred h-hccCCHHHHHHHHHhCCCCCCHHHHHHHH-HH-HHhcCCc----hHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCc
Q 001763 877 L-GRWGFLKEAEEFIEQLTFEPDSRIWTTLL-GA-CGVHRDD----IRGRLAAKKLIELEPENPSPYVQLSNIYAALGNW 949 (1017)
Q Consensus 877 l-~~~g~~~eA~~~~~~~~~~p~~~~~~~ll-~~-~~~~g~~----~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~ 949 (1017)
+ ...-..++|++-++++...--. -...+. .. -.++.+- ..++.-|+..+|+. .......+|+|....++
T Consensus 355 LIt~qT~pEea~KKL~~La~~l~~-kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy 430 (459)
T KOG4340|consen 355 LITCQTAPEEAFKKLDGLAGMLTE-KLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDY 430 (459)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhcccccc
Confidence 4 3344577777665543210000 011111 11 1122222 23455566666663 34778889999999999
Q ss_pred HHHHHHHHHHHHc
Q 001763 950 NEVNTLRREMREK 962 (1017)
Q Consensus 950 ~~a~~~~~~m~~~ 962 (1017)
..++++++.-.+-
T Consensus 431 ~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 431 PMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999866553
No 107
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.63 E-value=1.8e-06 Score=94.63 Aligned_cols=216 Identities=13% Similarity=0.072 Sum_probs=175.3
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 001763 659 FDDDFLHIALLSMYMNSKRNTDARLLFTEFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRA 738 (1017)
Q Consensus 659 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~ 738 (1017)
|+-......+++.+..+|-..+|..+|++... |...|.+|...|+..+|.++..+..+ -+||..-|..+.+.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlem------w~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEM------WDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHH------HHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 46777778899999999999999999988754 88899999999999999999888887 37888889888888
Q ss_pred HhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHH
Q 001763 739 CAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDAL 816 (1017)
Q Consensus 739 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 816 (1017)
.....-+++|.++.+.... .+...+.....+.++++++.+.|+.-.+ +....+|.....+..+.++++.|.
T Consensus 467 ~~d~s~yEkawElsn~~sa-------rA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISA-------RAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ccChHHHHHHHHHhhhhhH-------HHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 8888788888888776532 2334444555568999999999986655 333458999999999999999999
Q ss_pred HHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC
Q 001763 817 KVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL 893 (1017)
Q Consensus 817 ~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~ 893 (1017)
+.|..... ..||. ..|+++..+|...|+-.+|...++...+ +. .-+...+-+..-+..+-|.+++|++.+.++
T Consensus 540 ~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 540 KAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99999988 68988 6899999999999999999999999887 43 333344445555667899999999998775
No 108
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.60 E-value=4.2e-07 Score=84.10 Aligned_cols=108 Identities=14% Similarity=0.077 Sum_probs=93.3
Q ss_pred HHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhC
Q 001763 852 QIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELE 929 (1017)
Q Consensus 852 ~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~ 929 (1017)
.+|++.++ +.|+ ++......+...|++++|.+.++.. ...| +...|..++.+|...|+++.|+..++++++++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45566555 4555 4566788899999999999999986 4666 56689999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCC
Q 001763 930 PENPSPYVQLSNIYAALGNWNEVNTLRREMREKGV 964 (1017)
Q Consensus 930 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 964 (1017)
|+++.+++.+|.+|...|++++|.+.+++..+...
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999998876543
No 109
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.59 E-value=3e-07 Score=82.76 Aligned_cols=98 Identities=11% Similarity=0.068 Sum_probs=86.7
Q ss_pred CchhHHHHHHhhhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 001763 866 RVDHCACMVDLLGRWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIY 943 (1017)
Q Consensus 866 ~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y 943 (1017)
+.+....+...+...|++++|+++++-+ ...| +..-|..|+..|+..|+++.|+.+|.+++.++|++|.++.+++.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3556666777788999999999999886 4667 5568999999999999999999999999999999999999999999
Q ss_pred HhcCCcHHHHHHHHHHHHcC
Q 001763 944 AALGNWNEVNTLRREMREKG 963 (1017)
Q Consensus 944 ~~~g~~~~a~~~~~~m~~~~ 963 (1017)
...|+.+.|.+.++...+..
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999887653
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.55 E-value=3.2e-06 Score=92.68 Aligned_cols=223 Identities=17% Similarity=0.180 Sum_probs=174.6
Q ss_pred CCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHH
Q 001763 759 GYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVL 838 (1017)
Q Consensus 759 ~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 838 (1017)
++.|--..-..+.+.+.++|-..+|..+|++.. .|-..+.+|...|+..+|.++..+-++ -+||...|..++
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LG 464 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLG 464 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhh
Confidence 344555666789999999999999999999865 788889999999999999999998888 468889999999
Q ss_pred HHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCch
Q 001763 839 TACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQ-LTFEP-DSRIWTTLLGACGVHRDDI 916 (1017)
Q Consensus 839 ~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~-~~~~p-~~~~~~~ll~~~~~~g~~~ 916 (1017)
...-..--+++|.++++..-.. .-..+.....+.++++++.+.++. +.++| -..+|..++-+..+.++++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhH
Confidence 9988888899999998875441 111222334457899999999876 56676 5568999888888889999
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCCccCCceeEEEECCEEEEEecCCCCC-CChHHH
Q 001763 917 RGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVKKFPGCSWIVLGQNTNFFVAGDTSH-PNADRI 995 (1017)
Q Consensus 917 ~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~g~s~i~~~~~~~~f~~~d~~~-~~~~~~ 995 (1017)
.|..+|...+.++|++..++++++-.|.+.|+..+|-...++...-+- -+|-.-.| +-.++.|-+| .++.+.
T Consensus 537 ~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-----~~w~iWEN--ymlvsvdvge~eda~~A 609 (777)
T KOG1128|consen 537 AAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-----QHWQIWEN--YMLVSVDVGEFEDAIKA 609 (777)
T ss_pred HHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-----CCCeeeec--hhhhhhhcccHHHHHHH
Confidence 999999999999999999999999999999999999888877665442 13444444 2235566555 456777
Q ss_pred HHHHHHHHH
Q 001763 996 CAVLEDLTA 1004 (1017)
Q Consensus 996 ~~~l~~l~~ 1004 (1017)
|..+.++.+
T Consensus 610 ~~rll~~~~ 618 (777)
T KOG1128|consen 610 YHRLLDLRK 618 (777)
T ss_pred HHHHHHhhh
Confidence 776666544
No 111
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.54 E-value=3e-06 Score=98.30 Aligned_cols=133 Identities=13% Similarity=0.137 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcC-chhHHHHHH
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPR-VDHCACMVD 875 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~ 875 (1017)
.+..++....+.|++++|+.+++...+ +.||. .....++.++.+.+++++|+..+++... ..|+ ..+...+..
T Consensus 88 ~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~~a~ 162 (694)
T PRK15179 88 FQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILLEAK 162 (694)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHHHHH
Confidence 455556666666666666666666666 45655 3455555666666666666666666554 3443 345555566
Q ss_pred hhhccCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCch
Q 001763 876 LLGRWGFLKEAEEFIEQLT-FEPD-SRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSP 935 (1017)
Q Consensus 876 ~l~~~g~~~eA~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~ 935 (1017)
++.+.|+++||.++|+++. ..|+ ..+|.+++.++...|+.++|..+|+++++...+-...
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 6666666666666666542 3333 3456666666666666666666666666655443333
No 112
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.53 E-value=1.9e-06 Score=89.47 Aligned_cols=217 Identities=13% Similarity=0.068 Sum_probs=120.1
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCC-h--hHHHH-HHHHHH
Q 001763 731 TFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERN-Y--VISWN-SMIVGF 806 (1017)
Q Consensus 731 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~-~--~~~~~-~l~~~~ 806 (1017)
...-+.+++...|.++... ..+... ..|.......+...+...++-+++..-+++..... . ...+. ..+..+
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 3444555666666655332 222221 23344444444444433345555555554433211 1 11222 222344
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHH----HHhhhccCC
Q 001763 807 AKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACM----VDLLGRWGF 882 (1017)
Q Consensus 807 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l----~~~l~~~g~ 882 (1017)
...|++++|++++++- .+.......+.+|...++++.|.+.++.|.+ +..| .+...+ +.+..-.++
T Consensus 113 ~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD-~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDED-SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp CCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCC-HHHHHHHHHHHHHHHTTTC
T ss_pred HHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCc-HHHHHHHHHHHHHHhCchh
Confidence 5567777777766542 2233444455666777777777777777765 3333 222222 333322346
Q ss_pred HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCc-HHHHHHHHHH
Q 001763 883 LKEAEEFIEQLT--FEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNW-NEVNTLRREM 959 (1017)
Q Consensus 883 ~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~-~~a~~~~~~m 959 (1017)
+.+|.-+|+++. ..+++.+.+.++.++...|++++|+..++++++.+|.++.+..+++-+....|+. +.+.+...++
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 778887777763 3456667776777777788888888888888888888888888888888888888 5566677666
Q ss_pred HH
Q 001763 960 RE 961 (1017)
Q Consensus 960 ~~ 961 (1017)
+.
T Consensus 263 ~~ 264 (290)
T PF04733_consen 263 KQ 264 (290)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 113
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.52 E-value=6.2e-06 Score=96.36 Aligned_cols=209 Identities=14% Similarity=0.157 Sum_probs=173.2
Q ss_pred HHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCC-Ch------hHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 001763 751 IHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAER-NY------VISWNSMIVGFAKNGYAEDALKVFHEMK 823 (1017)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~-~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 823 (1017)
=|++.+...|. ....|...+......+++++|++++++.... +. ...|.++++.....|.-+...+.|+++.
T Consensus 1446 DferlvrssPN-SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1446 DFERLVRSSPN-SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHHhcCCC-cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 35555666665 5567777777888889999999999887651 11 1479999999999998888899999999
Q ss_pred HCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC-CCCC---C
Q 001763 824 ETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL-TFEP---D 898 (1017)
Q Consensus 824 ~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p---~ 898 (1017)
+ + -|. ..|..|+..|.+.+++++|.++++.|.++++ .....|...++.+.+.++-++|.+++++. ..-| .
T Consensus 1525 q--y-cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1525 Q--Y-CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred H--h-cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence 8 3 355 5789999999999999999999999999877 66778999999999999999999998764 3333 2
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCCc
Q 001763 899 SRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVK 965 (1017)
Q Consensus 899 ~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 965 (1017)
.....-.+..-.++||.++|+.+++-++.-.|.....|..+.+.=.+.|+-+.++.+++++.+.++.
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 3355556667778999999999999999999999999999999999999999999999999987664
No 114
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.51 E-value=3.4e-06 Score=82.64 Aligned_cols=153 Identities=11% Similarity=0.138 Sum_probs=109.9
Q ss_pred HhHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHH
Q 001763 771 IDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSE 849 (1017)
Q Consensus 771 ~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~ 849 (1017)
+-.|...|+++......+.+..+.. .+...++.++++..+++.++ ..|+. ..|..|+..|...|++++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPLH---------QFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCccc---------cccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHH
Confidence 3456777777665444433222110 12235667788888888887 45655 677888888888888999
Q ss_pred HHHHHHHhhhhcCCCc-CchhHHHHHHhh-hccCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHH
Q 001763 850 GRQIFETMVSCHGIQP-RVDHCACMVDLL-GRWGF--LKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAK 923 (1017)
Q Consensus 850 a~~~~~~m~~~~~~~p-~~~~~~~l~~~l-~~~g~--~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 923 (1017)
|...|++..+ +.| +...+..+..++ .+.|+ .++|.+++++. ...| +...+..++..+...|++++|+..++
T Consensus 92 A~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 92 ALLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9888888876 555 456677777754 67777 58899888886 4666 55678888888899999999999999
Q ss_pred HHHhhCCCCCchHH
Q 001763 924 KLIELEPENPSPYV 937 (1017)
Q Consensus 924 ~~l~~~p~~~~~~~ 937 (1017)
++++++|.+..-+-
T Consensus 169 ~aL~l~~~~~~r~~ 182 (198)
T PRK10370 169 KVLDLNSPRVNRTQ 182 (198)
T ss_pred HHHhhCCCCccHHH
Confidence 99999997765543
No 115
>PLN02789 farnesyltranstransferase
Probab=98.50 E-value=6.4e-06 Score=86.73 Aligned_cols=186 Identities=15% Similarity=0.138 Sum_probs=141.5
Q ss_pred hHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCC-CHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcH
Q 001763 772 DMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNG-YAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRV 847 (1017)
Q Consensus 772 ~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~ 847 (1017)
.++.+.++.++|+.+.+.+.. |+...+|+.....+...| +.++++..++++++. .|+. .++.....++.+.|..
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCch
Confidence 344556788899999998875 444458888877787888 679999999999994 5665 4566665556666653
Q ss_pred --HHHHHHHHHhhhhcCCCc-CchhHHHHHHhhhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCc----
Q 001763 848 --SEGRQIFETMVSCHGIQP-RVDHCACMVDLLGRWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVH---RDD---- 915 (1017)
Q Consensus 848 --~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~---- 915 (1017)
++++.+++++++ +.| +...|+....++.+.|++++|+++++++ ...| +..+|+......... |..
T Consensus 123 ~~~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 123 AANKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccH
Confidence 778999989887 555 4567888888999999999999999987 4555 666899887766543 222
Q ss_pred hHHHHHHHHHHhhCCCCCchHHHHHHHHHh----cCCcHHHHHHHHHHHHc
Q 001763 916 IRGRLAAKKLIELEPENPSPYVQLSNIYAA----LGNWNEVNTLRREMREK 962 (1017)
Q Consensus 916 ~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~ 962 (1017)
+.+....+++++++|+|..++..++.+|.. .++..+|.+......+.
T Consensus 200 e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~ 250 (320)
T PLN02789 200 DSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK 250 (320)
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc
Confidence 467777789999999999999999999988 34566777777665543
No 116
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.46 E-value=7.6e-05 Score=93.83 Aligned_cols=27 Identities=11% Similarity=0.101 Sum_probs=17.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhcCCCC
Q 001763 564 GSSLIDMYVKCGFIGAAHKVLSCMPQR 590 (1017)
Q Consensus 564 ~~~l~~~y~~~g~~~~A~~~~~~~~~~ 590 (1017)
.......|...|++.+|..........
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a~d~ 370 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAAGDA 370 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCH
Confidence 344455566777777777766666543
No 117
>PF12854 PPR_1: PPR repeat
Probab=98.45 E-value=2.5e-07 Score=60.24 Aligned_cols=33 Identities=48% Similarity=0.826 Sum_probs=24.6
Q ss_pred CCCCChhhHHHHHHHHhccCCHHHHHHHHHhcC
Q 001763 252 GCVPDQVAFVTVINVCFNLGRLDEARELFAQMQ 284 (1017)
Q Consensus 252 g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 284 (1017)
|+.||..||++||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677777777777777777777777777777764
No 118
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.45 E-value=1.1e-05 Score=94.23 Aligned_cols=216 Identities=13% Similarity=0.093 Sum_probs=137.5
Q ss_pred CCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHH-HHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhH
Q 001763 691 PKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSV-LRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSA 769 (1017)
Q Consensus 691 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 769 (1017)
|.+...|-.|+..|...+++++|+.+.+...+. .|+...+... ...+...+++..+..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 344555666666666666666666666655543 4554332222 2233344443333322 2
Q ss_pred HHhHHHhcCCHHHHHHHHHhccC-CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcH
Q 001763 770 LIDMYAKCGDVKRSAQVFDEMAE-RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRV 847 (1017)
Q Consensus 770 l~~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~ 847 (1017)
+++......++.-...+.+.|.. .+...++..++.+|.+.|+.++|..+++++++ +.|+. ...+.++..|+.. +.
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~--~D~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVK--ADRDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHh-hH
Confidence 22223333333222222223332 11112667889999999999999999999999 55765 6778888888888 99
Q ss_pred HHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC-CCCCC---------------------HHHHHHH
Q 001763 848 SEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL-TFEPD---------------------SRIWTTL 905 (1017)
Q Consensus 848 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~---------------------~~~~~~l 905 (1017)
++|.+++.+++.. |...+++.++.++++++ ...|+ ...|.-+
T Consensus 166 ~KA~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l 229 (906)
T PRK14720 166 EKAITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDL 229 (906)
T ss_pred HHHHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHH
Confidence 9999999988762 44455666666666654 23332 1123333
Q ss_pred HHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 001763 906 LGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYA 944 (1017)
Q Consensus 906 l~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~ 944 (1017)
-.-|....+++++...++.+++.+|.|..+...++..|.
T Consensus 230 ~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 230 YEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 355667789999999999999999999999999999988
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.42 E-value=6.6e-06 Score=84.53 Aligned_cols=184 Identities=13% Similarity=-0.012 Sum_probs=129.9
Q ss_pred CcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCC--CcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChh---HH
Q 001763 726 LPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDL--DEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYV---IS 798 (1017)
Q Consensus 726 ~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~---~~ 798 (1017)
......+..+...+...|++++|...++.++...+.. ...++..++.+|.+.|++++|+..++++.+ |+.. ..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 3445678888889999999999999999998877641 124678899999999999999999999875 3222 25
Q ss_pred HHHHHHHHHhC--------CCHHHHHHHHHHHHHCCCCCChH-hHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchh
Q 001763 799 WNSMIVGFAKN--------GYAEDALKVFHEMKETQAMPDDV-TFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDH 869 (1017)
Q Consensus 799 ~~~l~~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 869 (1017)
|..+..++... |++++|++.|+++++ ..|+.. ....+..... . ... . ..+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~~----~------~~~-~--------~~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMDY----L------RNR-L--------AGK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHHH----H------HHH-H--------HHH
Confidence 66677777665 789999999999998 467753 2221111100 0 000 0 011
Q ss_pred HHHHHHhhhccCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCC
Q 001763 870 CACMVDLLGRWGFLKEAEEFIEQL----TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEP 930 (1017)
Q Consensus 870 ~~~l~~~l~~~g~~~eA~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p 930 (1017)
...+.+.|.+.|++++|+..+++. +..| ....|..++.++...|+.++|...++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 234667788888888888887764 2233 245788888888888999998888777766555
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.40 E-value=8.8e-06 Score=78.82 Aligned_cols=125 Identities=18% Similarity=0.106 Sum_probs=59.2
Q ss_pred HHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc
Q 001763 835 LGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL--TFEPDSRIWTTLLGACGVH 912 (1017)
Q Consensus 835 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~--~~~p~~~~~~~ll~~~~~~ 912 (1017)
..+.+++...|+-+++..+..+.... ..-+.+.....+....+.|++.+|...+.+. +-++|...|+.++.+|-+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 33444444444444444444443221 1112222223444455555555555555443 1233444555555555555
Q ss_pred CCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 001763 913 RDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMRE 961 (1017)
Q Consensus 913 g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 961 (1017)
|+++.|...|.+++++.|.++.++.+|+..|.-.|+.++|..+......
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555555555555555555555555555555555555555544443
No 121
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.40 E-value=0.004 Score=78.44 Aligned_cols=126 Identities=12% Similarity=0.134 Sum_probs=75.2
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhCCCCC-cchH-----hHHHhHHHhcCCHHHHHHHHHhccCCChh------HHHHH
Q 001763 734 SVLRACAVLSSLRDGGEIHSLIFHTGYDLD-EITG-----SALIDMYAKCGDVKRSAQVFDEMAERNYV------ISWNS 801 (1017)
Q Consensus 734 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~-----~~l~~~y~~~g~~~~A~~~~~~~~~~~~~------~~~~~ 801 (1017)
.+.......|+.+.|...+..+........ ...+ ......+...|+.+.|...+.....+... ..+..
T Consensus 617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 696 (903)
T PRK04841 617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRN 696 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHH
Confidence 344455667777777777666543311111 0000 11223445578888888887665542211 11345
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHC----CCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhh
Q 001763 802 MIVGFAKNGYAEDALKVFHEMKET----QAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVS 859 (1017)
Q Consensus 802 l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 859 (1017)
+..++...|++++|...+++.++. |..++. .+...+..++...|+.++|...+.+..+
T Consensus 697 ~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 697 IARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666777888888888888877653 222222 3556667778888888888888888876
No 122
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.40 E-value=4.1e-06 Score=82.61 Aligned_cols=96 Identities=21% Similarity=0.225 Sum_probs=65.9
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCc-hhHHHHHHhhhcc
Q 001763 803 IVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRV-DHCACMVDLLGRW 880 (1017)
Q Consensus 803 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~l~~~ 880 (1017)
.+-..+.++|++|+..|.+.++ +.|+. +.|..-..+|++.|.++.|++-.++.+. +.|.. ..|..|.-+|...
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHcc
Confidence 3446677889999999999888 67755 6677788888888888888888888776 55542 3555555556666
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHH
Q 001763 881 GFLKEAEEFIEQL-TFEPDSRIWT 903 (1017)
Q Consensus 881 g~~~eA~~~~~~~-~~~p~~~~~~ 903 (1017)
|++++|++.|++. .+.|+..+|.
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K 186 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYK 186 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHH
Confidence 6666666555553 4555444433
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.39 E-value=1.3e-05 Score=77.58 Aligned_cols=153 Identities=19% Similarity=0.143 Sum_probs=88.5
Q ss_pred hHHHhHHHhcCCHHHHHHHHHhccCCChh--HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHcccC
Q 001763 768 SALIDMYAKCGDVKRSAQVFDEMAERNYV--ISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPD-DVTFLGVLTACSHA 844 (1017)
Q Consensus 768 ~~l~~~y~~~g~~~~A~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~ 844 (1017)
..+...|.-.|+-+++..+..+....... ...+..+......|++.+|+..+++... +.|+ ..+++.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHc
Confidence 44555555566666666665554431111 1334456666666777777777776666 3343 35666666666677
Q ss_pred CcHHHHHHHHHHhhhhcCCCcC-chhHHHHHHhhhccCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCchHHHHH
Q 001763 845 GRVSEGRQIFETMVSCHGIQPR-VDHCACMVDLLGRWGFLKEAEEFIEQLTF-EP-DSRIWTTLLGACGVHRDDIRGRLA 921 (1017)
Q Consensus 845 g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~l~~~g~~~eA~~~~~~~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~ 921 (1017)
|+.++|..-|.+..+ +.|+ +..+++|.-.|.-.|+++.|+.++..... .+ |+.+-.+|.-.-..+|+++.|+..
T Consensus 148 Gr~~~Ar~ay~qAl~---L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALE---LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHH---hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 777777776666665 3332 34556666666666666666666655432 22 555566666666666666666655
Q ss_pred HHHH
Q 001763 922 AKKL 925 (1017)
Q Consensus 922 ~~~~ 925 (1017)
..+-
T Consensus 225 ~~~e 228 (257)
T COG5010 225 AVQE 228 (257)
T ss_pred cccc
Confidence 5443
No 124
>PF12854 PPR_1: PPR repeat
Probab=98.39 E-value=2.5e-07 Score=60.28 Aligned_cols=32 Identities=34% Similarity=0.482 Sum_probs=17.7
Q ss_pred cCCCCcchHHHHHHHHHcCCCchhHHHhhhcC
Q 001763 186 GFESSSFCKGALIDMYAKLNNVSDARRVFDGA 217 (1017)
Q Consensus 186 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~ 217 (1017)
|+.||..+||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
No 125
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.38 E-value=4.6e-06 Score=86.67 Aligned_cols=217 Identities=15% Similarity=0.053 Sum_probs=142.6
Q ss_pred HHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHHHH
Q 001763 738 ACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALK 817 (1017)
Q Consensus 738 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 817 (1017)
-..-.|++..+..-.+ ........+.....-+...|...|+.+.++.-+..-..+... ....+...+...++-+.++.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~-av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQ-AVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCH-HHHHHHHHHCTSTTHHCHHH
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHH-HHHHHHHHHhCccchHHHHH
Confidence 3445677777765444 222222223445556778888999988877666655555555 55555554444356666766
Q ss_pred HHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhCC-C
Q 001763 818 VFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQLT-F 895 (1017)
Q Consensus 818 ~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~~-~ 895 (1017)
-+++.+..+..++. ........++.+.|++++|+++++.. .+.+.....|.+|.+.||++.|.+.++.|. .
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 66665544333233 34445556788999999999876542 457777888999999999999999999985 5
Q ss_pred CCCHHHHHHHH-HHHHh--cCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcC
Q 001763 896 EPDSRIWTTLL-GACGV--HRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKG 963 (1017)
Q Consensus 896 ~p~~~~~~~ll-~~~~~--~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 963 (1017)
..|..+..... +.-.. ..++..|...|+.+.+..|.++..++.++.++...|+|++|.++.....+..
T Consensus 161 ~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 161 DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 66665433222 22222 2368999999999999888899999999999999999999999987765433
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.26 E-value=7.7e-05 Score=78.77 Aligned_cols=145 Identities=16% Similarity=0.133 Sum_probs=113.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhH-HHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCc-hhHHHHHH
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTF-LGVLTACSHAGRVSEGRQIFETMVSCHGIQPRV-DHCACMVD 875 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~ 875 (1017)
.|.-..-.+...|++++|+..+++++. -.||+..| ......+...|+..+|.+.+++++. ..|+. ...-.+.+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~ 382 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHH
Confidence 666666777788999999999999888 46877655 4455678889999999999999887 56663 34556778
Q ss_pred hhhccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHH
Q 001763 876 LLGRWGFLKEAEEFIEQLT--FEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVN 953 (1017)
Q Consensus 876 ~l~~~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~ 953 (1017)
+|...|+..||+..++... .+.|+..|..|..+|...|+..++..+. +..|+-.|+|++|.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHH
Confidence 8999999999999888753 3347789999999999999877765543 56788899999999
Q ss_pred HHHHHHHHcCC
Q 001763 954 TLRREMREKGV 964 (1017)
Q Consensus 954 ~~~~~m~~~~~ 964 (1017)
......+++.-
T Consensus 446 ~~l~~A~~~~~ 456 (484)
T COG4783 446 IFLMRASQQVK 456 (484)
T ss_pred HHHHHHHHhcc
Confidence 99888887644
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.25 E-value=3.8e-05 Score=89.37 Aligned_cols=144 Identities=13% Similarity=0.076 Sum_probs=120.0
Q ss_pred CCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHH
Q 001763 760 YDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLG 836 (1017)
Q Consensus 760 ~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ 836 (1017)
...++..+..|..+....|++++|+.+++...+ |+....+..++..+.+.+++++|+..+++.++ ..|+. .....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHH
Confidence 334688999999999999999999999999886 77777899999999999999999999999999 57888 45677
Q ss_pred HHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 001763 837 VLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQLT--FEPDSRIWTTLLG 907 (1017)
Q Consensus 837 l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~~--~~p~~~~~~~ll~ 907 (1017)
+..++.+.|++++|..+|+++.. ..+-+...+..+..+|...|+.++|...+++.- ..|...-|+.++.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 77788999999999999999987 222336678888999999999999999999862 4455555555553
No 128
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=0.00024 Score=68.25 Aligned_cols=169 Identities=11% Similarity=0.122 Sum_probs=116.2
Q ss_pred hHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHcccC
Q 001763 768 SALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPD-DVTFLGVLTACSHA 844 (1017)
Q Consensus 768 ~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~ 844 (1017)
-.+.-+...+|+.+.|...++++.. |+....-.--+.-+-..|++++|+++++.+++.+ |+ .+++.--+.+.-..
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHHHHHc
Confidence 3344455567777777777776654 3322121222333556688888888888888864 54 46776666666667
Q ss_pred CcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---CchHHH
Q 001763 845 GRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHR---DDIRGR 919 (1017)
Q Consensus 845 g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g---~~~~a~ 919 (1017)
|+--+|++.+....+. ..-|.+.|.-+.++|...|.+++|.=.++++ -+.| ++.....|....+..| |.+.+.
T Consensus 134 GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred CCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 7777888888877773 3557778888888888888888888888886 3566 4445566666655544 778899
Q ss_pred HHHHHHHhhCCCCCchHHHHH
Q 001763 920 LAAKKLIELEPENPSPYVQLS 940 (1017)
Q Consensus 920 ~~~~~~l~~~p~~~~~~~~l~ 940 (1017)
..|++++++.|.+..+++.+.
T Consensus 212 kyy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 212 KYYERALKLNPKNLRALFGIY 232 (289)
T ss_pred HHHHHHHHhChHhHHHHHHHH
Confidence 999999999997766655543
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.25 E-value=3.1e-05 Score=90.61 Aligned_cols=205 Identities=13% Similarity=0.081 Sum_probs=134.5
Q ss_pred CCCCCh-HHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCCceeehh
Q 001763 621 GLSPND-ITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPNPKSTVLWTA 699 (1017)
Q Consensus 621 g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 699 (1017)
++.|+. ..+..|+..+...++++++.++....++.. |.....+..++.+|...++.+++..+ .
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv--------------~ 88 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL--------------N 88 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh--------------h
Confidence 444543 456666777767777777777776655555 56666666666666666666555443 1
Q ss_pred hhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCC
Q 001763 700 VISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGD 779 (1017)
Q Consensus 700 li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~ 779 (1017)
++.......++.-...+...|... .-+...+..+..+|-+.|+.+++..+++++++.++. |+.+.|.++..|+.. +
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-h
Confidence 222333333442222233334332 223457778888899999999999999999999976 899999999999999 9
Q ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhH---------------------HHHH
Q 001763 780 VKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTF---------------------LGVL 838 (1017)
Q Consensus 780 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~---------------------~~l~ 838 (1017)
+++|++++.+... .|....++.++.+++.++.+ ..|+.+.+ ..+-
T Consensus 165 L~KA~~m~~KAV~------------~~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~ 230 (906)
T PRK14720 165 KEKAITYLKKAIY------------RFIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHREFTRLVGLLEDLY 230 (906)
T ss_pred HHHHHHHHHHHHH------------HHHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 9999998765432 24455677777777777777 45654333 2222
Q ss_pred HHcccCCcHHHHHHHHHHhhh
Q 001763 839 TACSHAGRVSEGRQIFETMVS 859 (1017)
Q Consensus 839 ~~~~~~g~~~~a~~~~~~m~~ 859 (1017)
..|...++|++++.+++.+++
T Consensus 231 ~~y~~~~~~~~~i~iLK~iL~ 251 (906)
T PRK14720 231 EPYKALEDWDEVIYILKKILE 251 (906)
T ss_pred HHHhhhhhhhHHHHHHHHHHh
Confidence 456666777777777777766
No 130
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.24 E-value=9e-06 Score=75.07 Aligned_cols=95 Identities=22% Similarity=0.330 Sum_probs=74.7
Q ss_pred hhHHHHHHhhhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 001763 868 DHCACMVDLLGRWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAA 945 (1017)
Q Consensus 868 ~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~ 945 (1017)
.....++..+...|++++|.+.+++. ...| ++..|..++..+...|+++.|...++++++.+|+++..++.++.+|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 44555666666777777777777664 3344 556777788888888999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHHc
Q 001763 946 LGNWNEVNTLRREMREK 962 (1017)
Q Consensus 946 ~g~~~~a~~~~~~m~~~ 962 (1017)
.|++++|.+.+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 98 LGEPESALKALDLAIEI 114 (135)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999988777664
No 131
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.21 E-value=0.00012 Score=86.22 Aligned_cols=195 Identities=15% Similarity=0.210 Sum_probs=109.0
Q ss_pred CCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcC-----HHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcc
Q 001763 691 PKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPD-----QATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEI 765 (1017)
Q Consensus 691 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 765 (1017)
|.+.+.|-..|.-+.+.++.++|.+++++.+.. +.+. .-.|.++++.-...|.-+...++|+++.+..- --.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd--~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD--AYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc--hHH
Confidence 445566766666677777777777777776543 2222 13466666665566666666666666655432 134
Q ss_pred hHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--hHhHHH-HHHH
Q 001763 766 TGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPD--DVTFLG-VLTA 840 (1017)
Q Consensus 766 ~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~-l~~~ 840 (1017)
+|..|...|.+.+++++|.++++.|.+ +.....|...+..+.++++.++|-.++++.++ .-|. ++-+.. .+..
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~--~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALK--SLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh--hcchhhhHHHHHHHHHH
Confidence 566666677777777777777776665 22333666666666666666667677766666 3343 332222 2222
Q ss_pred cccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHh
Q 001763 841 CSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQ 892 (1017)
Q Consensus 841 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~ 892 (1017)
-.+.|+.+.|..+|+-.+..| +-..+.|+..+|+-.+.|..+.++.+|++
T Consensus 1610 EFk~GDaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeR 1659 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFER 1659 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHH
Confidence 345566666666666655522 11233444444444444444444444444
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.18 E-value=0.00019 Score=75.83 Aligned_cols=144 Identities=12% Similarity=0.097 Sum_probs=110.6
Q ss_pred HHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHH
Q 001763 738 ACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDA 815 (1017)
Q Consensus 738 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 815 (1017)
.....|.+++|+..+..+++..+. |+......++.+.+.|+.++|.+.++++.. |+....|.++..+|.+.|+..+|
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 345678888888888888877775 777788888899999999999999988876 44344778888899999999999
Q ss_pred HHHHHHHHHCCCCC-ChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhCC
Q 001763 816 LKVFHEMKETQAMP-DDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQLT 894 (1017)
Q Consensus 816 ~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~~ 894 (1017)
+.+++..... .| |...|..|..+|...|+..++...+-+ .|...|++++|+.+.....
T Consensus 394 i~~L~~~~~~--~p~dp~~w~~LAqay~~~g~~~~a~~A~AE-------------------~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 394 IRILNRYLFN--DPEDPNGWDLLAQAYAELGNRAEALLARAE-------------------GYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHhhc--CCCCchHHHHHHHHHHHhCchHHHHHHHHH-------------------HHHhCCCHHHHHHHHHHHH
Confidence 9988888875 35 447888899999999988888775544 3557888999988886652
Q ss_pred --CCCCHHHHH
Q 001763 895 --FEPDSRIWT 903 (1017)
Q Consensus 895 --~~p~~~~~~ 903 (1017)
.+++...|.
T Consensus 453 ~~~~~~~~~~a 463 (484)
T COG4783 453 QQVKLGFPDWA 463 (484)
T ss_pred HhccCCcHHHH
Confidence 445555543
No 133
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=1.7e-05 Score=81.14 Aligned_cols=165 Identities=8% Similarity=-0.003 Sum_probs=114.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhH-----------
Q 001763 803 IVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHC----------- 870 (1017)
Q Consensus 803 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~----------- 870 (1017)
..++...|++++|...--..++ +.++. .....-..++...++.+.|+..|++.+. +.|+-...
T Consensus 176 a~cl~~~~~~~~a~~ea~~ilk--ld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 176 AECLAFLGDYDEAQSEAIDILK--LDATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhhcccchhHHHHHHHHHh--cccchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHH
Confidence 3456777888888887777777 34433 3333334455677888888888888765 44542211
Q ss_pred --HHHHHhhhccCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHH
Q 001763 871 --ACMVDLLGRWGFLKEAEEFIEQL-TFEPD-----SRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNI 942 (1017)
Q Consensus 871 --~~l~~~l~~~g~~~eA~~~~~~~-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~ 942 (1017)
..-.+-.-+.|++.+|.+.+... .+.|+ ...|.....+....|+..+|+.-.+.+++++|.-..+|..-++.
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 11133456889999999988764 45554 44566666667788999999999999999999999999999999
Q ss_pred HHhcCCcHHHHHHHHHHHHcCCccCCceeE
Q 001763 943 YAALGNWNEVNTLRREMREKGVKKFPGCSW 972 (1017)
Q Consensus 943 y~~~g~~~~a~~~~~~m~~~~~~~~~g~s~ 972 (1017)
|...++|++|.+-+++..+......+..+|
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~~s~e~r~~l 360 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLEKDCEIRRTL 360 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 999999999988777665544333333333
No 134
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=0.00017 Score=74.06 Aligned_cols=305 Identities=12% Similarity=-0.006 Sum_probs=185.8
Q ss_pred chhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCC--CCCceeehhhhhhcccCCCchHHHHHHH--
Q 001763 643 HLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYEALHFYR-- 718 (1017)
Q Consensus 643 ~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~-- 718 (1017)
..+...+..+++.. |++...|..-+..|.-.|++++|.--.+.-.. +...-.......++...++..+|.+.++
T Consensus 66 ~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~ 143 (486)
T KOG0550|consen 66 GNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSK 143 (486)
T ss_pred HHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhhh
Confidence 33334444444444 44555555555556666666665544433222 1122222233333333343333333332
Q ss_pred -------------HHHHCCC-CcCHHhHHHHHH-HHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHH
Q 001763 719 -------------EMRSHNV-LPDQATFVSVLR-ACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRS 783 (1017)
Q Consensus 719 -------------~m~~~~~-~pd~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A 783 (1017)
....... +|.-.++..+-. ++...|++++|..+--.+++.+.. +......-..++.-.++.+.|
T Consensus 144 ~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka 222 (486)
T KOG0550|consen 144 QAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKA 222 (486)
T ss_pred hhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHH
Confidence 2222211 243455555544 446688999999998888887765 555555555666778899999
Q ss_pred HHHHHhccCCChh--------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-----hHhHHHHHHHcccC
Q 001763 784 AQVFDEMAERNYV--------------ISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPD-----DVTFLGVLTACSHA 844 (1017)
Q Consensus 784 ~~~~~~~~~~~~~--------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~l~~~~~~~ 844 (1017)
+..|++...-++. ..|..=.+-..+.|++.+|.+.|.+.+. +.|+ ...|.....+....
T Consensus 223 ~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~--idP~n~~~naklY~nra~v~~rL 300 (486)
T KOG0550|consen 223 INHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN--IDPSNKKTNAKLYGNRALVNIRL 300 (486)
T ss_pred HHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc--CCccccchhHHHHHHhHhhhccc
Confidence 9999988764432 2355566777899999999999999988 4554 34677778888999
Q ss_pred CcHHHHHHHHHHhhhhcCCCcCc-hhHHHHHHhhhccCCHHHHHHHHHhC-CCCCC------------------HHHHHH
Q 001763 845 GRVSEGRQIFETMVSCHGIQPRV-DHCACMVDLLGRWGFLKEAEEFIEQL-TFEPD------------------SRIWTT 904 (1017)
Q Consensus 845 g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~------------------~~~~~~ 904 (1017)
|+..+|+...+...+ +.|.. ..|-.-..++...+++++|.+-+++. ....+ ..-|..
T Consensus 301 grl~eaisdc~~Al~---iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~yk 377 (486)
T KOG0550|consen 301 GRLREAISDCNEALK---IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYK 377 (486)
T ss_pred CCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHH
Confidence 999999999888766 66653 45555566777788899999888764 32222 112444
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhhCCCCC-ch-------HHHHHHHHHhcCCcHHHHHH
Q 001763 905 LLGACGVHRDDIRGRLAAKKLIELEPENP-SP-------YVQLSNIYAALGNWNEVNTL 955 (1017)
Q Consensus 905 ll~~~~~~g~~~~a~~~~~~~l~~~p~~~-~~-------~~~l~~~y~~~g~~~~a~~~ 955 (1017)
+++.-+...+.+......+.+|...|+-. .. +-..++.|...++..++.+.
T Consensus 378 ilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~ 436 (486)
T KOG0550|consen 378 ILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRF 436 (486)
T ss_pred HhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhc
Confidence 44444444555666666666777788532 22 45667777777777776543
No 135
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=0.00023 Score=68.94 Aligned_cols=162 Identities=12% Similarity=0.118 Sum_probs=95.0
Q ss_pred HHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCCh
Q 001763 716 FYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNY 795 (1017)
Q Consensus 716 ~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~ 795 (1017)
+.+.+.......+......-...|.+.+++++|........ +..+...=+.++.|..+++-|++.+++|..-+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ide 168 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDE 168 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch
Confidence 34444444333343333334456777777777777655411 333344445566677777777777777776444
Q ss_pred hHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHH
Q 001763 796 VISWNSMIVGFAK----NGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCA 871 (1017)
Q Consensus 796 ~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 871 (1017)
..+.+.++.++.+ .+++.+|.-+|++|-+. ..|+..+.++.+.+|...|++++|..+++..+.+. .-++++..
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--~~dpetL~ 245 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--AKDPETLA 245 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--CCCHHHHH
Confidence 4344444444332 23567777777777664 45666777777777777777777777777776632 22355555
Q ss_pred HHHHhhhccCCHHHH
Q 001763 872 CMVDLLGRWGFLKEA 886 (1017)
Q Consensus 872 ~l~~~l~~~g~~~eA 886 (1017)
+++.+-...|+-.++
T Consensus 246 Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 246 NLIVLALHLGKDAEV 260 (299)
T ss_pred HHHHHHHHhCCChHH
Confidence 555555555554433
No 136
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.10 E-value=0.0054 Score=62.85 Aligned_cols=239 Identities=16% Similarity=0.143 Sum_probs=160.3
Q ss_pred CCchHHHHHHHHHHHCCCCcCH--HhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHH
Q 001763 708 DSNYEALHFYREMRSHNVLPDQ--ATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQ 785 (1017)
Q Consensus 708 g~~~~A~~~~~~m~~~~~~pd~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~ 785 (1017)
|++++|.+-|+.|.. .|.. .-+..|.-.-...|+.+-|+++-+..-..-+. -.-.+.+.++..+..|+|+.|++
T Consensus 134 G~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~Alk 209 (531)
T COG3898 134 GDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALK 209 (531)
T ss_pred CchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHH
Confidence 555555555555543 2221 12333333445788999999988888776665 45677788999999999999999
Q ss_pred HHHhccC-----CChh-HHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCCCChH-hHHHHHHHcccCCcHHHHHHHHH
Q 001763 786 VFDEMAE-----RNYV-ISWNSMIVGFA---KNGYAEDALKVFHEMKETQAMPDDV-TFLGVLTACSHAGRVSEGRQIFE 855 (1017)
Q Consensus 786 ~~~~~~~-----~~~~-~~~~~l~~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~ 855 (1017)
+.+.-.. ++.. ..--.|+.+-+ -.-+...|...-.+..+ +.||.+ .-+.-..++.+.|+..++-.+++
T Consensus 210 Lvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE 287 (531)
T COG3898 210 LVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILE 287 (531)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHH
Confidence 9986543 4433 11222332222 12346667777777777 678874 44556778999999999999999
Q ss_pred HhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHh---C-CCCCCHH-HHHHHHHHHHhcCCchHHHHHHHHHHhhCC
Q 001763 856 TMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQ---L-TFEPDSR-IWTTLLGACGVHRDDIRGRLAAKKLIELEP 930 (1017)
Q Consensus 856 ~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~---~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p 930 (1017)
.+-+ ..|+++.....+ +.|.|+.- .+-+++ + ..+||+. .-.+...+-...|++..|...++.+...+|
T Consensus 288 ~aWK---~ePHP~ia~lY~--~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p 360 (531)
T COG3898 288 TAWK---AEPHPDIALLYV--RARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP 360 (531)
T ss_pred HHHh---cCCChHHHHHHH--HhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc
Confidence 9966 788887654433 34555522 222222 1 3566554 444555667788999999999999999999
Q ss_pred CCCchHHHHHHHHHhc-CCcHHHHHHHHHHH
Q 001763 931 ENPSPYVQLSNIYAAL-GNWNEVNTLRREMR 960 (1017)
Q Consensus 931 ~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~ 960 (1017)
...+|.+|+++-... |+-+++.+...+..
T Consensus 361 -res~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 361 -RESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred -hhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 456889999998877 88888877765443
No 137
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.09 E-value=0.04 Score=63.14 Aligned_cols=160 Identities=13% Similarity=0.076 Sum_probs=79.7
Q ss_pred HHHHHHHHhccCcHH---HHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCChh-HHHH-HHHHHH
Q 001763 732 FVSVLRACAVLSSLR---DGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYV-ISWN-SMIVGF 806 (1017)
Q Consensus 732 ~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~-~~~~-~l~~~~ 806 (1017)
.+.++..|.+.++.. +|+-+++......+. |..+--.|+.+|+-.|-+..|.++++.+.-+++. .+.. -+..-+
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s~h-nf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~ 517 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKSPH-NFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRA 517 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCc-cHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHH
Confidence 345556666666544 344444544444443 5556667788888888888888888877654432 1111 223334
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCh--HhHHHHHHHcccCCcHHHH---HHHHHHhhhhcCCCcC-chhHHHHHHhhhcc
Q 001763 807 AKNGYAEDALKVFHEMKETQAMPDD--VTFLGVLTACSHAGRVSEG---RQIFETMVSCHGIQPR-VDHCACMVDLLGRW 880 (1017)
Q Consensus 807 ~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~a---~~~~~~m~~~~~~~p~-~~~~~~l~~~l~~~ 880 (1017)
...|++..+...+++.+.- --++ .+-.....||. -|.+.+. ...-+++.. ...-. ...=+...+.++..
T Consensus 518 ~t~g~~~~~s~~~~~~lkf--y~~~~kE~~eyI~~AYr-~g~ySkI~em~~fr~rL~~--S~q~~a~~VE~~~l~ll~~~ 592 (932)
T KOG2053|consen 518 ETSGRSSFASNTFNEHLKF--YDSSLKETPEYIALAYR-RGAYSKIPEMLAFRDRLMH--SLQKWACRVENLQLSLLCNA 592 (932)
T ss_pred HhcccchhHHHHHHHHHHH--HhhhhhhhHHHHHHHHH-cCchhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhC
Confidence 4556666666666555441 1111 12222233332 2333322 222222221 00000 11123345667777
Q ss_pred CCHHHHHHHHHhCCCCC
Q 001763 881 GFLKEAEEFIEQLTFEP 897 (1017)
Q Consensus 881 g~~~eA~~~~~~~~~~p 897 (1017)
++.++-...+..|..+|
T Consensus 593 ~~~~q~~~~~~~~~l~~ 609 (932)
T KOG2053|consen 593 DRGTQLLKLLESMKLPP 609 (932)
T ss_pred CcHHHHHHHHhccccCc
Confidence 77777777777765444
No 138
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.09 E-value=0.026 Score=60.77 Aligned_cols=179 Identities=13% Similarity=0.140 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccC---cHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHH
Q 001763 711 YEALHFYREMRSHNVLPDQATFVSVLRACAVLS---SLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVF 787 (1017)
Q Consensus 711 ~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~ 787 (1017)
+++.+++++..+.-..-+..+|..+.+--...- ..+....+++.++.....--.-+|..+++.-.|..-++.|+.+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 455556665554322333334433332211111 23444444444443322212346677777777777777777777
Q ss_pred HhccCCCh----hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhH-HHHHHHcccCCcHHHHHHHHHHhhhhcC
Q 001763 788 DEMAERNY----VISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTF-LGVLTACSHAGRVSEGRQIFETMVSCHG 862 (1017)
Q Consensus 788 ~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 862 (1017)
.+..+... +....+++.-||. ++.+-|.++|+--++. .+|...| ...+.-+++.++-+.+..+|++.+.. +
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~ 465 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-V 465 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-c
Confidence 77765222 2244555555544 6677777777766552 3555333 33455556777777777888877774 5
Q ss_pred CCcC--chhHHHHHHhhhccCCHHHHHHHHHhC
Q 001763 863 IQPR--VDHCACMVDLLGRWGFLKEAEEFIEQL 893 (1017)
Q Consensus 863 ~~p~--~~~~~~l~~~l~~~g~~~eA~~~~~~~ 893 (1017)
+.|+ .+.|..|++-=..-|++.-+.++-+++
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 5554 456777777777777777777776553
No 139
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.07 E-value=0.01 Score=63.66 Aligned_cols=148 Identities=15% Similarity=0.132 Sum_probs=89.3
Q ss_pred hhHHHHHHHhhhhcCCCCChhcHHHHHHhhhcccchHhhHHHHHHHHHhcCCc-hhhHHHHHHHHhhccCChhHHHHHHh
Q 001763 405 AHEVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLAT-NLYVGNALVDMYAKSRALEEARKQFE 483 (1017)
Q Consensus 405 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~ 483 (1017)
.+...+.+.++...-..--..+|...++..-+..-++.|+.+|..+.+.+..+ +++++++++..||. ++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 44455555555443222223456666666667777777777777777776655 77777777776664 56667777776
Q ss_pred hcCC--CCccc-chhhhHHhHhcCCHHHHHHHHHHhhccCCCCCcccHHHHHHHhhcccCCCcchhHHHHHhhhCCCCCc
Q 001763 484 RIQN--QDNVS-WNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSN 560 (1017)
Q Consensus 484 ~~~~--~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~ 560 (1017)
.-.. +|.-. -+..+.-+...++-..|..+|++....++.||. .
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~k----------------------------------s 471 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADK----------------------------------S 471 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhh----------------------------------h
Confidence 5432 22222 223344444455555555566655554444331 4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHhcC
Q 001763 561 IYVGSSLIDMYVKCGFIGAAHKVLSCM 587 (1017)
Q Consensus 561 ~~~~~~l~~~y~~~g~~~~A~~~~~~~ 587 (1017)
..+|..+++--..-|++..+.++-+++
T Consensus 472 ~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 472 KEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 567888888888888888887776554
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.06 E-value=4.5e-05 Score=70.35 Aligned_cols=113 Identities=14% Similarity=0.131 Sum_probs=84.6
Q ss_pred HHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCc-CchhHHHHHHhhhccCCHHHHHHHHHhC-C
Q 001763 818 VFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQP-RVDHCACMVDLLGRWGFLKEAEEFIEQL-T 894 (1017)
Q Consensus 818 ~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~ 894 (1017)
.++++++ ..|+. .....++..+...|++++|.+.|+.+.. ..| +...+..+..+|.+.|++++|.+.+++. .
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA---YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666 45655 4456667777788888888888888776 233 4566777788888888888888887775 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCch
Q 001763 895 FEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSP 935 (1017)
Q Consensus 895 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~ 935 (1017)
..| +...|..++..+...|+.+.|...++++++++|++...
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 445 55678888888888999999999999999999977654
No 141
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.02 E-value=7e-06 Score=54.66 Aligned_cols=35 Identities=23% Similarity=0.439 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCCh
Q 001763 122 LAWNSILSMYSKRGSFENVFKSFGLLCNRGGVPNG 156 (1017)
Q Consensus 122 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 156 (1017)
++||+||++|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
No 142
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.98 E-value=1.1e-05 Score=53.74 Aligned_cols=35 Identities=40% Similarity=0.727 Sum_probs=33.0
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCh
Q 001763 223 VSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQ 257 (1017)
Q Consensus 223 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 257 (1017)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 143
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.98 E-value=1.5e-05 Score=63.13 Aligned_cols=65 Identities=23% Similarity=0.265 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC-CcHHHHHHHHHHHHc
Q 001763 898 DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALG-NWNEVNTLRREMREK 962 (1017)
Q Consensus 898 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g-~~~~a~~~~~~m~~~ 962 (1017)
++.+|..++..+...|+++.|+..++++++++|+++.+++.+|.+|...| ++++|.+.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46689999999999999999999999999999999999999999999999 799999999877653
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.96 E-value=8.9e-05 Score=79.61 Aligned_cols=121 Identities=18% Similarity=0.162 Sum_probs=88.9
Q ss_pred HHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 001763 835 LGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVH 912 (1017)
Q Consensus 835 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~ 912 (1017)
.+|+..+...+++++|+.+|+++.+. .|+ ....++.++...++-.+|.+++++. ...| +...+..-...|...
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 34555666667777777777776652 233 4444666666667777777777664 3344 444555555668888
Q ss_pred CCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHH
Q 001763 913 RDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMR 960 (1017)
Q Consensus 913 g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 960 (1017)
++.+.|...++++.++.|++...+..|+.+|.+.|+|++|+.....+-
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999987766553
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.88 E-value=0.00034 Score=65.09 Aligned_cols=123 Identities=16% Similarity=0.162 Sum_probs=64.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh----HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCc--hhHHH
Q 001763 799 WNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD----VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRV--DHCAC 872 (1017)
Q Consensus 799 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~ 872 (1017)
|..++..+ ..++..++.+.++++.+. .|+. .....+...+...|++++|...|+.+... ...|.. .....
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 33444444 356666666667776664 2333 23344555666677777777777776662 111211 12233
Q ss_pred HHHhhhccCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 001763 873 MVDLLGRWGFLKEAEEFIEQLTFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKL 925 (1017)
Q Consensus 873 l~~~l~~~g~~~eA~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 925 (1017)
+..++...|++++|++.++..+..+ .+..+..++.++...|+.+.|+..|+++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 4555566666666666665543222 2233444445555555555555555554
No 146
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.88 E-value=0.094 Score=60.26 Aligned_cols=155 Identities=10% Similarity=0.075 Sum_probs=89.7
Q ss_pred HHHHHhccCCCccc---hhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCC---CCCceeehhhhhh
Q 001763 630 TSLLDACDGPYKFH---LGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPN---PKSTVLWTAVISG 703 (1017)
Q Consensus 630 ~~ll~a~~~~~~~~---~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~li~~ 703 (1017)
+.+++.|.+.++.. +|.-+++.-+... |.+...-..++.+|.-.|-+..|.++|+.+.- ..|+..|- +..-
T Consensus 440 ~~Lid~~rktnd~~~l~eaI~LLE~glt~s--~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~ 516 (932)
T KOG2053|consen 440 NHLIDLWRKTNDLTDLFEAITLLENGLTKS--PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRR 516 (932)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhcC--CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHH
Confidence 45667777776655 3333344444443 67888888899999999999999999998764 12222221 2233
Q ss_pred cccCCCchHHHHHHHHHHHC---CCCcCHHhHHHHHHHHhccCcHHHHHHHH---HHHHHhCCCCCcchHhHHHhHHHhc
Q 001763 704 HAQNDSNYEALHFYREMRSH---NVLPDQATFVSVLRACAVLSSLRDGGEIH---SLIFHTGYDLDEITGSALIDMYAKC 777 (1017)
Q Consensus 704 ~~~~g~~~~A~~~~~~m~~~---~~~pd~~t~~~ll~~~~~~~~~~~a~~~~---~~~~~~~~~~~~~~~~~l~~~y~~~ 777 (1017)
+...|++..+...++....- ..+ +..-|.++ | .+.|.+.+..+.. +++...--..-..+-+..++..+..
T Consensus 517 ~~t~g~~~~~s~~~~~~lkfy~~~~k-E~~eyI~~--A-Yr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~ 592 (932)
T KOG2053|consen 517 AETSGRSSFASNTFNEHLKFYDSSLK-ETPEYIAL--A-YRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNA 592 (932)
T ss_pred HHhcccchhHHHHHHHHHHHHhhhhh-hhHHHHHH--H-HHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44456776666666554331 100 11112222 2 2445555444433 2333222222344556778888888
Q ss_pred CCHHHHHHHHHhcc
Q 001763 778 GDVKRSAQVFDEMA 791 (1017)
Q Consensus 778 g~~~~A~~~~~~~~ 791 (1017)
++.++=...+..|.
T Consensus 593 ~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 593 DRGTQLLKLLESMK 606 (932)
T ss_pred CcHHHHHHHHhccc
Confidence 99999888888887
No 147
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=0.0017 Score=62.65 Aligned_cols=163 Identities=13% Similarity=0.181 Sum_probs=126.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhH-HHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHh
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTF-LGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDL 876 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 876 (1017)
.+..+.-+....|+.+.|...++++.+. .|.+.-. ..-.--+...|++++|+++|+..+++. +-|...|--=+.+
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHH
Confidence 4555666667789999999999998885 3665322 222223567899999999999998842 3345566666777
Q ss_pred hhccCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC---cHH
Q 001763 877 LGRWGFLKEAEEFIEQL--TFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGN---WNE 951 (1017)
Q Consensus 877 l~~~g~~~eA~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~---~~~ 951 (1017)
+-..|+..+|++-+.+. .+..|...|.-|...|...|+++.|.-.+|.++=+.|.++-.+-.|+.+++-.|- ..-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 77888888999888775 3667899999999999999999999999999999999999999999999988775 344
Q ss_pred HHHHHHHHHHcCC
Q 001763 952 VNTLRREMREKGV 964 (1017)
Q Consensus 952 a~~~~~~m~~~~~ 964 (1017)
|.+.+.+..+...
T Consensus 210 arkyy~~alkl~~ 222 (289)
T KOG3060|consen 210 ARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHhCh
Confidence 5666666555444
No 148
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.87 E-value=9.7e-06 Score=52.75 Aligned_cols=33 Identities=39% Similarity=0.673 Sum_probs=31.2
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHH
Q 001763 922 AKKLIELEPENPSPYVQLSNIYAALGNWNEVNT 954 (1017)
Q Consensus 922 ~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 954 (1017)
++++|+++|+|+.+|+.||++|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 789999999999999999999999999999963
No 149
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.84 E-value=2.4e-05 Score=51.57 Aligned_cols=34 Identities=21% Similarity=0.423 Sum_probs=29.5
Q ss_pred chhHHHHHHHHHcCCChhhHHHHHHHHHhCCCCC
Q 001763 121 ILAWNSILSMYSKRGSFENVFKSFGLLCNRGGVP 154 (1017)
Q Consensus 121 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 154 (1017)
+++||++|.+|++.|+++.|+++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3588999999999999999999999999888877
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.84 E-value=0.00023 Score=66.24 Aligned_cols=123 Identities=17% Similarity=0.121 Sum_probs=93.1
Q ss_pred HHHHHHHcccCCcHHHHHHHHHHhhhhcCCCc-CchhHHHHHHhhhccCCHHHHHHHHHhCC-CCCCHH----HHHHHHH
Q 001763 834 FLGVLTACSHAGRVSEGRQIFETMVSCHGIQP-RVDHCACMVDLLGRWGFLKEAEEFIEQLT-FEPDSR----IWTTLLG 907 (1017)
Q Consensus 834 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~l~~~g~~~eA~~~~~~~~-~~p~~~----~~~~ll~ 907 (1017)
|..++.++ ..|++..+...++.+.++++-.| .....-.+...+...|++++|.+.++.+. ..||+. .+..|..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33344444 48888899999999988654443 22344456788999999999999999863 334442 4455667
Q ss_pred HHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHH
Q 001763 908 ACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRRE 958 (1017)
Q Consensus 908 ~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 958 (1017)
.+...|+++.|...++. +...+..+..+..+|++|.+.|++++|.+.|++
T Consensus 94 ~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 78889999999999876 445556778899999999999999999999875
No 151
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=0.0013 Score=63.97 Aligned_cols=142 Identities=13% Similarity=0.098 Sum_probs=101.9
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHH----Hhhh
Q 001763 803 IVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMV----DLLG 878 (1017)
Q Consensus 803 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~----~~l~ 878 (1017)
+..|+..|++++|++..+.... -+ ....-...+.+..+.+-|.+..++|.+ + .+..+.+.+. ..-.
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~----lE--~~Al~VqI~lk~~r~d~A~~~lk~mq~---i-ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGEN----LE--AAALNVQILLKMHRFDLAEKELKKMQQ---I-DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hHHhhcCCChHHHHHHHhccch----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHc---c-chHHHHHHHHHHHHHHhc
Confidence 3457778889999888776211 12 222222334567778888888888876 2 2334454444 4445
Q ss_pred ccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHH
Q 001763 879 RWGFLKEAEEFIEQLT--FEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNT 954 (1017)
Q Consensus 879 ~~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 954 (1017)
-.+++.+|.-+++++. ..|++.+.+-.+..|...|++++|+...+.++..+|+++..+.++.-.-...|+-.++.+
T Consensus 185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHH
Confidence 5667899999999984 567777777777778888999999999999999999999999988888888888776654
No 152
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.81 E-value=3.2e-05 Score=50.91 Aligned_cols=34 Identities=29% Similarity=0.637 Sum_probs=31.9
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 001763 222 TVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVP 255 (1017)
Q Consensus 222 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 255 (1017)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
No 153
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.79 E-value=2.2e-05 Score=64.98 Aligned_cols=77 Identities=21% Similarity=0.268 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHhCC-CCC---CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHH
Q 001763 881 GFLKEAEEFIEQLT-FEP---DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLR 956 (1017)
Q Consensus 881 g~~~eA~~~~~~~~-~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 956 (1017)
|++++|+.+++++. ..| +...|..++..+...|++++|...+++ .+.+|.++...+.+|.+|.+.|+|++|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 44555555554431 122 445666677788888888888888888 7788888788888899999999999998887
Q ss_pred HH
Q 001763 957 RE 958 (1017)
Q Consensus 957 ~~ 958 (1017)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 154
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.79 E-value=4.1e-05 Score=59.73 Aligned_cols=59 Identities=20% Similarity=0.228 Sum_probs=47.7
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcC
Q 001763 905 LLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKG 963 (1017)
Q Consensus 905 ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 963 (1017)
++..+...|+++.|+..++++++.+|+++.++..+|.+|...|++++|...++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 44566778888888888888888888888888888888888888888888888776543
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.78 E-value=0.00017 Score=64.69 Aligned_cols=61 Identities=13% Similarity=0.119 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhhCCCC---CchHHHHHHHHHhcCCcHHHHHHHHHHHHc
Q 001763 902 WTTLLGACGVHRDDIRGRLAAKKLIELEPEN---PSPYVQLSNIYAALGNWNEVNTLRREMREK 962 (1017)
Q Consensus 902 ~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 962 (1017)
+..++.++...|+++.|...+++++...|++ +.++..++.+|.+.|++++|.+.++.+.+.
T Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 42 HYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 3334444445555555555555555555543 334555555555555555555555554443
No 156
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.78 E-value=0.00037 Score=74.98 Aligned_cols=122 Identities=10% Similarity=0.083 Sum_probs=82.6
Q ss_pred HHHhHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcH
Q 001763 769 ALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRV 847 (1017)
Q Consensus 769 ~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~ 847 (1017)
.|+..+...++++.|+++|+++.+.++. .+..++..+...++-.+|++++++.++. .|.. ..+..-...|...|++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe-v~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE-VAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc-HHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCH
Confidence 3445555667777777777777776655 5555677777777777777777777763 4543 3344444556677777
Q ss_pred HHHHHHHHHhhhhcCCCcC-chhHHHHHHhhhccCCHHHHHHHHHhCCCC
Q 001763 848 SEGRQIFETMVSCHGIQPR-VDHCACMVDLLGRWGFLKEAEEFIEQLTFE 896 (1017)
Q Consensus 848 ~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~l~~~g~~~eA~~~~~~~~~~ 896 (1017)
+.|+++.+++.+ +.|+ .+.|..|+.+|...|++++|+-.++.+|..
T Consensus 251 ~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 251 ELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 777777777776 5554 457777777777777777777777777643
No 157
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00016 Score=72.37 Aligned_cols=109 Identities=13% Similarity=0.055 Sum_probs=86.7
Q ss_pred CcCchhHHHHHHhhhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh---cCCchHHHHHHHHHHhhCCCCCchHHH
Q 001763 864 QPRVDHCACMVDLLGRWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGV---HRDDIRGRLAAKKLIELEPENPSPYVQ 938 (1017)
Q Consensus 864 ~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~---~g~~~~a~~~~~~~l~~~p~~~~~~~~ 938 (1017)
+-|.+.|..|...|.+.|+.+.|...+.+. .+.| ++.++..+..++.. ..+..++..++++++.+||.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 446677888888888888888888888765 4444 56678877766443 236688999999999999999999999
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHcCCccCCceeE
Q 001763 939 LSNIYAALGNWNEVNTLRREMREKGVKKFPGCSW 972 (1017)
Q Consensus 939 l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~g~s~ 972 (1017)
|+..++..|++.+|...|++|.+......|..+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ 266 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSL 266 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHH
Confidence 9999999999999999999999876654444333
No 158
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.76 E-value=0.00031 Score=63.64 Aligned_cols=101 Identities=9% Similarity=-0.014 Sum_probs=80.0
Q ss_pred cchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHH
Q 001763 764 EITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTA 840 (1017)
Q Consensus 764 ~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~ 840 (1017)
......+...+...|++++|.++|+-+.. +....-|..|..++...|++++|+..|..... +.||. ..+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHH
Confidence 34455667777888999999999987665 44445889999999999999999999999988 45665 678888888
Q ss_pred cccCCcHHHHHHHHHHhhhhcCCCcC
Q 001763 841 CSHAGRVSEGRQIFETMVSCHGIQPR 866 (1017)
Q Consensus 841 ~~~~g~~~~a~~~~~~m~~~~~~~p~ 866 (1017)
+...|+.+.|.+.|+..+...+-.|.
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHhccChh
Confidence 99999999999999998874443433
No 159
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.75 E-value=0.00016 Score=61.77 Aligned_cols=93 Identities=23% Similarity=0.279 Sum_probs=73.5
Q ss_pred HHHHHHhhhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 001763 870 CACMVDLLGRWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALG 947 (1017)
Q Consensus 870 ~~~l~~~l~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g 947 (1017)
+..++..+.+.|++++|.+.+++. ...| +...|..++..+...|+++.|...++++++..|.+...+..++.+|...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445566677778888888777764 3444 34567777777888899999999999999999998889999999999999
Q ss_pred CcHHHHHHHHHHHHc
Q 001763 948 NWNEVNTLRREMREK 962 (1017)
Q Consensus 948 ~~~~a~~~~~~m~~~ 962 (1017)
++++|.+.+....+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999888776543
No 160
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.72 E-value=0.00032 Score=76.05 Aligned_cols=107 Identities=11% Similarity=0.091 Sum_probs=67.3
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccC
Q 001763 803 IVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWG 881 (1017)
Q Consensus 803 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g 881 (1017)
+..+...|++++|++.|+++++ ..|+. ..|..+..+|.+.|++++|+..++++++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---------------------- 64 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIE---------------------- 64 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------------
Confidence 3444555666666666666666 34543 4455555566666666666666665554
Q ss_pred CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhc
Q 001763 882 FLKEAEEFIEQLTFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAAL 946 (1017)
Q Consensus 882 ~~~eA~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~ 946 (1017)
+.| +...|..++.+|...|+++.|+..++++++++|+++.....+..+..+.
T Consensus 65 -------------l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 65 -------------LDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred -------------hCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 233 3445666666777777777777777888888887777777766664444
No 161
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.71 E-value=0.003 Score=64.10 Aligned_cols=180 Identities=9% Similarity=0.029 Sum_probs=114.1
Q ss_pred CcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChh---HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh--HhHH
Q 001763 763 DEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYV---ISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD--VTFL 835 (1017)
Q Consensus 763 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~ 835 (1017)
++......+..+...|++++|++.|+.+.. |+.. .+...++.+|.+.+++++|+..+++.++. .|++ +.+.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHH
Confidence 444455566677778999999999988876 3322 12345677888889999999999998883 4544 3333
Q ss_pred HHHHHccc--CC---------------c---HHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhCCC
Q 001763 836 GVLTACSH--AG---------------R---VSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQLTF 895 (1017)
Q Consensus 836 ~l~~~~~~--~g---------------~---~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~~~ 895 (1017)
....+.++ .+ + ..+|+..|+.+++.| -......+|...+..+..
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y----------------P~S~ya~~A~~rl~~l~~ 172 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY----------------PNSQYTTDATKRLVFLKD 172 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC----------------cCChhHHHHHHHHHHHHH
Confidence 33333221 11 1 234555555555533 222334444443333210
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC---CchHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 001763 896 EPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPEN---PSPYVQLSNIYAALGNWNEVNTLRREMRE 961 (1017)
Q Consensus 896 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 961 (1017)
.--. --...+.-|.+.|.+.-|+.-++.+++..|+. ..++..+...|...|..++|.++...+..
T Consensus 173 ~la~-~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 173 RLAK-YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHH-HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 0000 00123344778899999999999999998854 66788999999999999999998877654
No 162
>PRK15331 chaperone protein SicA; Provisional
Probab=97.70 E-value=0.00023 Score=64.70 Aligned_cols=90 Identities=13% Similarity=0.072 Sum_probs=77.3
Q ss_pred HHHHhhhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCc
Q 001763 872 CMVDLLGRWGFLKEAEEFIEQLT-FEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNW 949 (1017)
Q Consensus 872 ~l~~~l~~~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~ 949 (1017)
....-+-..|++++|+.+|+-+. ..| ++.-|..|+..|+..++++.|+..|..+.-++++||.+++..|..|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 33444567888999998888753 344 5667888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 001763 950 NEVNTLRREMRE 961 (1017)
Q Consensus 950 ~~a~~~~~~m~~ 961 (1017)
++|...+....+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999987776
No 163
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.69 E-value=0.00033 Score=62.84 Aligned_cols=105 Identities=15% Similarity=0.208 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh----HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHH
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD----VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACM 873 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 873 (1017)
.+...+..+...|++++|++.|+++++. .|+. ..+..+..++.+.|++++|...|+.+...+ |+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~------- 71 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY---PK------- 71 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC---CC-------
Confidence 3444555555555555555555555542 2321 233344445555555555555555544311 11
Q ss_pred HHhhhccCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchH
Q 001763 874 VDLLGRWGFLKEAEEFIEQLTFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPY 936 (1017)
Q Consensus 874 ~~~l~~~g~~~eA~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~ 936 (1017)
.| ...+|..++.++...|+.+.|...++++++..|+++.+.
T Consensus 72 ----------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 72 ----------------------SPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred ----------------------CCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 11 134566666777778888888888888888888776543
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.67 E-value=0.00047 Score=66.41 Aligned_cols=127 Identities=13% Similarity=0.172 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--hHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcC-chhHHHHH
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPD--DVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPR-VDHCACMV 874 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~ 874 (1017)
.+..++..+...|++++|+..|++.++....|+ ...+..++.+|.+.|++++|+..+++..+ +.|+ ...+..++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg 113 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHHHH
Confidence 567777778888888888888888877433332 24667777778888888888888888776 3443 44555666
Q ss_pred HhhhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 001763 875 DLLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGN 948 (1017)
Q Consensus 875 ~~l~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~ 948 (1017)
.+|...|+...|..-.+.. ...++.|...++++++++|++ |..+...+...|+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6666666665554332221 123567888888899988876 5555555555544
No 165
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.66 E-value=0.00019 Score=77.89 Aligned_cols=88 Identities=14% Similarity=0.095 Sum_probs=74.8
Q ss_pred HhhhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHH
Q 001763 875 DLLGRWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEV 952 (1017)
Q Consensus 875 ~~l~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a 952 (1017)
..+.+.|++++|++.+++. ...| +...|..++.++...|+++.|+..++++++++|+++.+|+.+|.+|...|++++|
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 3455677788888777765 4555 4557888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc
Q 001763 953 NTLRREMREK 962 (1017)
Q Consensus 953 ~~~~~~m~~~ 962 (1017)
...+++..+.
T Consensus 90 ~~~~~~al~l 99 (356)
T PLN03088 90 KAALEKGASL 99 (356)
T ss_pred HHHHHHHHHh
Confidence 9999877654
No 166
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.63 E-value=6e-05 Score=48.35 Aligned_cols=31 Identities=35% Similarity=0.639 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHcCCChhhHHHHHHHHHhCCC
Q 001763 122 LAWNSILSMYSKRGSFENVFKSFGLLCNRGG 152 (1017)
Q Consensus 122 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 152 (1017)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5789999999999999999999999988774
No 167
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.61 E-value=0.0003 Score=67.52 Aligned_cols=92 Identities=13% Similarity=-0.056 Sum_probs=68.4
Q ss_pred hhHHHHHHhhhccCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHH
Q 001763 868 DHCACMVDLLGRWGFLKEAEEFIEQL-TFEPD----SRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNI 942 (1017)
Q Consensus 868 ~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~ 942 (1017)
..|..++..+...|++++|+..+++. ...|+ ..+|..++..+...|+.++|+..++++++++|.+...+..++.+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i 115 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 34445555566666666666666554 22222 24788888889999999999999999999999999999999999
Q ss_pred HH-------hcCCcHHHHHHHHHH
Q 001763 943 YA-------ALGNWNEVNTLRREM 959 (1017)
Q Consensus 943 y~-------~~g~~~~a~~~~~~m 959 (1017)
|. ..|++++|...+++.
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHH
Confidence 99 888888666555443
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.61 E-value=0.00039 Score=66.97 Aligned_cols=49 Identities=18% Similarity=0.229 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 001763 900 RIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGN 948 (1017)
Q Consensus 900 ~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~ 948 (1017)
..|..++..+...|+++.|+..++++++..|+++..+..++.+|...|+
T Consensus 73 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 73 YILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence 4677777888888999999999999999999999999999999988877
No 169
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.56 E-value=8.8e-05 Score=47.55 Aligned_cols=31 Identities=39% Similarity=0.719 Sum_probs=26.8
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 001763 223 VSWTSMIAGYVQAGLPEAAFELFEKMIKVGC 253 (1017)
Q Consensus 223 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 253 (1017)
++||+||.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988773
No 170
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.54 E-value=0.0018 Score=62.18 Aligned_cols=109 Identities=16% Similarity=0.078 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh--HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcC-chhHHHH
Q 001763 797 ISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD--VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPR-VDHCACM 873 (1017)
Q Consensus 797 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 873 (1017)
..|..++..+...|++++|+..|++.+.....|.. .++..+..+|.+.|++++|+..+++... +.|+ ...+..+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~l 112 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHHH
Confidence 36778888888889999999999988874322222 4677888888889999999999888876 3443 3445555
Q ss_pred HHhhh-------ccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCC
Q 001763 874 VDLLG-------RWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENP 933 (1017)
Q Consensus 874 ~~~l~-------~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~ 933 (1017)
..++. +.|++++|.. .+++|...++++++.+|++.
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~-------------------------~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEA-------------------------WFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHH-------------------------HHHHHHHHHHHHHHhCcccH
Confidence 55555 3334333332 23467778888888888543
No 171
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.51 E-value=0.00078 Score=69.06 Aligned_cols=257 Identities=11% Similarity=0.067 Sum_probs=166.4
Q ss_pred cccCCCchHHHHHHHHHHHCCCCcCH----HhHHHHHHHHhccCcHHHHHHHHHHH--HH--hCCC-CCcchHhHHHhHH
Q 001763 704 HAQNDSNYEALHFYREMRSHNVLPDQ----ATFVSVLRACAVLSSLRDGGEIHSLI--FH--TGYD-LDEITGSALIDMY 774 (1017)
Q Consensus 704 ~~~~g~~~~A~~~~~~m~~~~~~pd~----~t~~~ll~~~~~~~~~~~a~~~~~~~--~~--~~~~-~~~~~~~~l~~~y 774 (1017)
+++.|+....+.+|+..++.| .-|. ..|..|.++|.-.+++++|.++|..= +. .|-+ -.......|++.+
T Consensus 27 Lck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 566777777788888877766 3333 34666677888888888888887532 11 1111 1234445577777
Q ss_pred HhcCCHHHHHHHHHhccC----CC-hh---HHHHHHHHHHHhCCC--------------------HHHHHHHHHHHHHCC
Q 001763 775 AKCGDVKRSAQVFDEMAE----RN-YV---ISWNSMIVGFAKNGY--------------------AEDALKVFHEMKETQ 826 (1017)
Q Consensus 775 ~~~g~~~~A~~~~~~~~~----~~-~~---~~~~~l~~~~~~~g~--------------------~~~A~~~~~~m~~~g 826 (1017)
--.|.+++|.-...+-.. -+ -+ .++..+.+.|-..|+ .+.|.+.|.+=++..
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888765432221 11 11 356677777765553 123445554433210
Q ss_pred C-CCCh----HhHHHHHHHcccCCcHHHHHHHHHHhh---hhcCCCcC-chhHHHHHHhhhccCCHHHHHHHHHhC----
Q 001763 827 A-MPDD----VTFLGVLTACSHAGRVSEGRQIFETMV---SCHGIQPR-VDHCACMVDLLGRWGFLKEAEEFIEQL---- 893 (1017)
Q Consensus 827 ~-~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~---~~~~~~p~-~~~~~~l~~~l~~~g~~~eA~~~~~~~---- 893 (1017)
- --|. ..|..|.+.|.-.|++++|+..-+.-+ ++||-+.. ...+.++.+++.-.|+++.|.+.++..
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 0 0122 367788888888999999988765432 33555443 456888999999999999999888652
Q ss_pred -CC---CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCC------CCCchHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 001763 894 -TF---EPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEP------ENPSPYVQLSNIYAALGNWNEVNTLRREMRE 961 (1017)
Q Consensus 894 -~~---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p------~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 961 (1017)
.+ ........+|++.|..-.+++.|+....+=+.+.. ...-++..|++.|...|..++|....++-.+
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 11 12334567788888888899999988877655422 3456799999999999999999876555443
No 172
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.51 E-value=0.00027 Score=55.07 Aligned_cols=61 Identities=25% Similarity=0.265 Sum_probs=47.7
Q ss_pred HHHhhhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCC
Q 001763 873 MVDLLGRWGFLKEAEEFIEQL-TFEPD-SRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENP 933 (1017)
Q Consensus 873 l~~~l~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~ 933 (1017)
+...+.+.|++++|++.+++. ...|+ ...|..++.++...|++++|+..++++++.+|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 345667778888888887775 45664 44888899999999999999999999999999875
No 173
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.49 E-value=0.0021 Score=72.71 Aligned_cols=75 Identities=21% Similarity=0.135 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCCccCCceeEEE
Q 001763 898 DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVKKFPGCSWIV 974 (1017)
Q Consensus 898 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~g~s~i~ 974 (1017)
++.+|..+.-.....|++++|...++++++++| +..+|..+|.+|...|+.++|.+.+++....... .|.+-|++
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~-~pt~~~~~ 493 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG-ENTLYWIE 493 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CchHHHHH
Confidence 445566555555556777777777777777777 4667777777777777777777777666554443 23344443
No 174
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.49 E-value=0.00073 Score=67.17 Aligned_cols=95 Identities=9% Similarity=0.142 Sum_probs=78.5
Q ss_pred HhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCCh--hHHHHHHHHHHHhCCCHHHHH
Q 001763 739 CAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNY--VISWNSMIVGFAKNGYAEDAL 816 (1017)
Q Consensus 739 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~ 816 (1017)
....+++++|...+..+++..+. |++.|..-.-+|.+.|.++.|++-.+....-|. ..+|..|..+|...|++++|+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 45678888999999888888877 888888888899999999999998888776443 357888999999999999999
Q ss_pred HHHHHHHHCCCCCChHhHHH
Q 001763 817 KVFHEMKETQAMPDDVTFLG 836 (1017)
Q Consensus 817 ~~~~~m~~~g~~p~~~~~~~ 836 (1017)
+.|++.++ +.|+..+|-.
T Consensus 170 ~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 170 EAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHhhhc--cCCCcHHHHH
Confidence 99999888 7888876644
No 175
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.40 E-value=0.00016 Score=56.95 Aligned_cols=52 Identities=19% Similarity=0.323 Sum_probs=43.4
Q ss_pred hcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHc
Q 001763 911 VHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREK 962 (1017)
Q Consensus 911 ~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 962 (1017)
..|+++.|+..++++++.+|+++.+...|+.+|.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5688889999999999999999999999999999999999998888765543
No 176
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.38 E-value=0.00042 Score=55.53 Aligned_cols=58 Identities=17% Similarity=0.196 Sum_probs=47.4
Q ss_pred HHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCC
Q 001763 907 GACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGV 964 (1017)
Q Consensus 907 ~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 964 (1017)
.++...++++.|...++++++++|+++..+..+|.+|...|++++|.+.++...+.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4567788888888888888888888888888888888888888888888887775543
No 177
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.37 E-value=0.0023 Score=56.10 Aligned_cols=95 Identities=15% Similarity=0.139 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh--HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchh-HHHHH
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD--VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDH-CACMV 874 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-~~~l~ 874 (1017)
.+.....++...|+.++|+.+|++.++.|+.+.. ..+..+.+++...|++++|..+++.....++-.+.... ...+.
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 4556778888999999999999999998876653 47788899999999999999999998875432221222 23344
Q ss_pred HhhhccCCHHHHHHHHHh
Q 001763 875 DLLGRWGFLKEAEEFIEQ 892 (1017)
Q Consensus 875 ~~l~~~g~~~eA~~~~~~ 892 (1017)
.++...|+.+||++.+-.
T Consensus 83 l~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHHCCCHHHHHHHHHH
Confidence 577888999998887654
No 178
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.34 E-value=0.0086 Score=54.86 Aligned_cols=132 Identities=15% Similarity=0.159 Sum_probs=85.8
Q ss_pred CCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCC-CcCchhHHHHHHhhhccCCHHHHHHHHHhC-CCCC---CHHHH
Q 001763 828 MPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGI-QPRVDHCACMVDLLGRWGFLKEAEEFIEQL-TFEP---DSRIW 902 (1017)
Q Consensus 828 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p---~~~~~ 902 (1017)
-|....-..|..+....|++.||...|++... |+ .-|....-.+..+....++..+|...++++ ..+| .+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 34444445556666666666666666666554 33 223444445555555666666666666553 2222 12234
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHc
Q 001763 903 TTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREK 962 (1017)
Q Consensus 903 ~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 962 (1017)
..+...+...|..+.|+.+++.++.-.| .+.+-...+..+.++|+.++|..-+..+.+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 4456778888999999999999999988 5777788889999999998887666555544
No 179
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.34 E-value=0.0016 Score=55.21 Aligned_cols=58 Identities=19% Similarity=0.261 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhh
Q 001763 799 WNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMV 858 (1017)
Q Consensus 799 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~ 858 (1017)
|..++..+...|++++|+..++++.+. .|+. ..+..+..++...|++++|.+.|+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555542 2322 334444444444455555555554443
No 180
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.33 E-value=0.031 Score=61.14 Aligned_cols=48 Identities=21% Similarity=0.144 Sum_probs=29.3
Q ss_pred cccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhCC-CCCC
Q 001763 841 CSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQLT-FEPD 898 (1017)
Q Consensus 841 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~~-~~p~ 898 (1017)
+-+...+.-|.++|.+|-+ ...++++....|+++||..+.++.| ..||
T Consensus 757 lk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~d 805 (1081)
T KOG1538|consen 757 LKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDD 805 (1081)
T ss_pred HhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcccccc
Confidence 3344445566667766643 2346677777777777777777765 3444
No 181
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.32 E-value=0.00041 Score=57.39 Aligned_cols=80 Identities=19% Similarity=0.333 Sum_probs=44.7
Q ss_pred CCCHHHHHHHHHHHHHCCC-CCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcC-chhHHHHHHhhhccCCHHHH
Q 001763 809 NGYAEDALKVFHEMKETQA-MPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPR-VDHCACMVDLLGRWGFLKEA 886 (1017)
Q Consensus 809 ~g~~~~A~~~~~~m~~~g~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~l~~~g~~~eA 886 (1017)
.|++++|+.+++++++... .|+...+..+..+|.+.|++++|+.++++ .+ ..|. ......++.+|...|+++||
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 4677777777777777422 11233444567777777777777777766 22 2222 22222335666666666666
Q ss_pred HHHHHh
Q 001763 887 EEFIEQ 892 (1017)
Q Consensus 887 ~~~~~~ 892 (1017)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666553
No 182
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.24 E-value=0.015 Score=63.34 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=22.0
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCCCchhHHHHHHHHhhCCch-HHHHHHHHHH
Q 001763 567 LIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNVE-DAVVLYRGMQ 618 (1017)
Q Consensus 567 l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~-~A~~l~~~m~ 618 (1017)
+.+.++-.|++.+|-++|.+ +|.. .|+++|.+|+
T Consensus 638 lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlR 672 (1081)
T KOG1538|consen 638 LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLR 672 (1081)
T ss_pred HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHH
Confidence 34445557788888877764 3455 6777776665
No 183
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.21 E-value=0.42 Score=50.83 Aligned_cols=200 Identities=15% Similarity=0.144 Sum_probs=116.1
Q ss_pred HhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcch-----HhHHHhHHHh----cCCHHHHHHHHHhccCCChh--HH
Q 001763 730 ATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEIT-----GSALIDMYAK----CGDVKRSAQVFDEMAERNYV--IS 798 (1017)
Q Consensus 730 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~l~~~y~~----~g~~~~A~~~~~~~~~~~~~--~~ 798 (1017)
.+|..+++.+.+.++.++|.+.+..+.-.++...... --.+.++.+. --++.+=+.+++.+...|+. ..
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQL 378 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQL 378 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHH
Confidence 5688888899999999999999887776655422111 1122233321 11223333344444433332 00
Q ss_pred HHHH---HHHHHhCCC-HHHHHHHHHHHHHCCCCCChHh-HHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHH
Q 001763 799 WNSM---IVGFAKNGY-AEDALKVFHEMKETQAMPDDVT-FLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACM 873 (1017)
Q Consensus 799 ~~~l---~~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 873 (1017)
..-| +.-+-+.|. -++|+.+++..++ +.|...- -+.+.. =....|.++...+ ...
T Consensus 379 vh~L~~~Ak~lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~---------fvKq~Y~qaLs~~-------~~~-- 438 (549)
T PF07079_consen 379 VHYLVFGAKHLWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFL---------FVKQAYKQALSMH-------AIP-- 438 (549)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHH---------HHHHHHHHHHhhh-------hHH--
Confidence 1111 222344444 5667777777666 4443322 221111 0122333333311 001
Q ss_pred HHhhhccCCHHHHHHHHHhCCCCC----CHHHHHHHHHH--HHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 001763 874 VDLLGRWGFLKEAEEFIEQLTFEP----DSRIWTTLLGA--CGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALG 947 (1017)
Q Consensus 874 ~~~l~~~g~~~eA~~~~~~~~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g 947 (1017)
++-+-++++++..+.| +..+-+.|..| ...+|++.++.....=+.+..| .+.+|-++|-......
T Consensus 439 --------rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k 509 (549)
T PF07079_consen 439 --------RLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENK 509 (549)
T ss_pred --------HHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHh
Confidence 1223345666766554 33466777776 5689999999999888999999 9999999999999999
Q ss_pred CcHHHHHHHHH
Q 001763 948 NWNEVNTLRRE 958 (1017)
Q Consensus 948 ~~~~a~~~~~~ 958 (1017)
+++||...+..
T Consensus 510 ~Y~eA~~~l~~ 520 (549)
T PF07079_consen 510 RYQEAWEYLQK 520 (549)
T ss_pred hHHHHHHHHHh
Confidence 99999988853
No 184
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.21 E-value=0.0011 Score=68.03 Aligned_cols=219 Identities=14% Similarity=0.081 Sum_probs=147.9
Q ss_pred HHhccCcHHHHHHHHHHHHHhCCCCC----cchHhHHHhHHHhcCCHHHHHHHHHhc-------cC-CChhHHHHHHHHH
Q 001763 738 ACAVLSSLRDGGEIHSLIFHTGYDLD----EITGSALIDMYAKCGDVKRSAQVFDEM-------AE-RNYVISWNSMIVG 805 (1017)
Q Consensus 738 ~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~y~~~g~~~~A~~~~~~~-------~~-~~~~~~~~~l~~~ 805 (1017)
-+++.|+.+.+..+|+.+++.|-+ | ..+|..|+++|.-.+++++|.+.-..- -. .+...+-..+.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 467899999999999999988865 4 346788999999999999999875421 11 1112244567778
Q ss_pred HHhCCCHHHHHHHHHHHH----HCCCC-CChHhHHHHHHHcccCCc-------------HHHHHHHHHHhhhh-------
Q 001763 806 FAKNGYAEDALKVFHEMK----ETQAM-PDDVTFLGVLTACSHAGR-------------VSEGRQIFETMVSC------- 860 (1017)
Q Consensus 806 ~~~~g~~~~A~~~~~~m~----~~g~~-p~~~~~~~l~~~~~~~g~-------------~~~a~~~~~~m~~~------- 860 (1017)
+...|.+++|+....+-+ +.|=+ -....+..|.+.|-..|+ .+++...|+...+-
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 888899999886544432 22211 122456677777765554 23344444433321
Q ss_pred ---cCCCc-CchhHHHHHHhhhccCCHHHHHHHHHh-CC------CC-CCHHHHHHHHHHHHhcCCchHHHHHHHHHHhh
Q 001763 861 ---HGIQP-RVDHCACMVDLLGRWGFLKEAEEFIEQ-LT------FE-PDSRIWTTLLGACGVHRDDIRGRLAAKKLIEL 928 (1017)
Q Consensus 861 ---~~~~p-~~~~~~~l~~~l~~~g~~~eA~~~~~~-~~------~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~ 928 (1017)
.|-.- .-..|+.+.+.|.-.|+++.|+.+.+. +. .+ .....+.+|++++...|+++.|.+.|++.+.+
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 11111 123577788888889999999988653 21 11 12336777888888899999999999987654
Q ss_pred ----CC--CCCchHHHHHHHHHhcCCcHHHHHHHH
Q 001763 929 ----EP--ENPSPYVQLSNIYAALGNWNEVNTLRR 957 (1017)
Q Consensus 929 ----~p--~~~~~~~~l~~~y~~~g~~~~a~~~~~ 957 (1017)
.- ..+..-+.|+|.|.-..++++|+....
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~ 299 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQ 299 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 22 346678899999999999999987643
No 185
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.20 E-value=0.0096 Score=67.53 Aligned_cols=58 Identities=9% Similarity=0.110 Sum_probs=26.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhh
Q 001763 799 WNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMV 858 (1017)
Q Consensus 799 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 858 (1017)
|..+.......|++++|...++++++ ++|+...|..++.+|...|+.++|.+.|++..
T Consensus 423 ~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 423 YEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333333344444444444444444 23444444444444444444444444444443
No 186
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.20 E-value=0.0018 Score=66.25 Aligned_cols=93 Identities=11% Similarity=0.037 Sum_probs=61.2
Q ss_pred HHHHHHhhhccCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCchHHHHHHHHHHhhCCC---CCchHHHHHH
Q 001763 870 CACMVDLLGRWGFLKEAEEFIEQL-TFEPDS----RIWTTLLGACGVHRDDIRGRLAAKKLIELEPE---NPSPYVQLSN 941 (1017)
Q Consensus 870 ~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~---~~~~~~~l~~ 941 (1017)
|..-++++.+.|++++|+..|++. ...|+. ..+..++..+...|+++.|...|+++++..|+ .+.+++.++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 444444444556666666665553 223332 35666777777788888888888888877775 3566677788
Q ss_pred HHHhcCCcHHHHHHHHHHHHc
Q 001763 942 IYAALGNWNEVNTLRREMREK 962 (1017)
Q Consensus 942 ~y~~~g~~~~a~~~~~~m~~~ 962 (1017)
+|...|++++|.++++.+.+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888766543
No 187
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.16 E-value=0.021 Score=60.03 Aligned_cols=93 Identities=18% Similarity=0.266 Sum_probs=45.0
Q ss_pred HhHHHhHHHhc-CCHHHHHHHHHhccC----CChh----HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-----h-
Q 001763 767 GSALIDMYAKC-GDVKRSAQVFDEMAE----RNYV----ISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPD-----D- 831 (1017)
Q Consensus 767 ~~~l~~~y~~~-g~~~~A~~~~~~~~~----~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~- 831 (1017)
+..++.+|... |++++|++.|++..+ .+.. ..+..++..+.+.|++++|+++|++........+ .
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 33455555555 666666666665443 1111 2344555666666666666666666655322111 1
Q ss_pred HhHHHHHHHcccCCcHHHHHHHHHHhhh
Q 001763 832 VTFLGVLTACSHAGRVSEGRQIFETMVS 859 (1017)
Q Consensus 832 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 859 (1017)
..|...+-++...|++..|...|+....
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1223333344556666666666666544
No 188
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.14 E-value=0.2 Score=51.95 Aligned_cols=214 Identities=15% Similarity=0.112 Sum_probs=132.1
Q ss_pred HhcCChHHHHHHHhhCCC--CCCceeehhhhhhcccCCCchHHHHHHHHHHHCC-CCcCHHh--HHHHHHHH--h-ccCc
Q 001763 673 MNSKRNTDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYEALHFYREMRSHN-VLPDQAT--FVSVLRAC--A-VLSS 744 (1017)
Q Consensus 673 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~pd~~t--~~~ll~~~--~-~~~~ 744 (1017)
.+.|..+.|+..-+.... |.-.=.|.+.+...++.|+++.|+++.+.-.+.. +.+|..- -..|+.+- + -..+
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 356677777766655443 2233345567777788888888888877765532 3444321 12222221 1 1234
Q ss_pred HHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHH-HHHHHHHH
Q 001763 745 LRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDA-LKVFHEMK 823 (1017)
Q Consensus 745 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 823 (1017)
...|+..-.+..+..+.. +..-..-...|.+.|++.++-.+++.+-+..+. .-...+..+.+.|+.-.. ++-.+++.
T Consensus 245 p~~Ar~~A~~a~KL~pdl-vPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY~~ar~gdta~dRlkRa~~L~ 322 (531)
T COG3898 245 PASARDDALEANKLAPDL-VPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIALLYVRARSGDTALDRLKRAKKLE 322 (531)
T ss_pred hHHHHHHHHHHhhcCCcc-chHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 556666655555554431 122333456788999999999999988763322 111233344566654322 23333333
Q ss_pred HCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhc-cCCHHHHHHHHHhC
Q 001763 824 ETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGR-WGFLKEAEEFIEQL 893 (1017)
Q Consensus 824 ~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~-~g~~~eA~~~~~~~ 893 (1017)
. ++||+ .+...+..+-...|++..|..--+.... ..|....|..|.|.-.. .|+-.++..++-+.
T Consensus 323 s--lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r---~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 323 S--LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR---EAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred h--cCccchHHHHHHHHHHHhccchHHHHHHHHHHhh---hCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 3 67877 6777788888889999988887777655 78998999999888644 48999999888764
No 189
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.14 E-value=0.0069 Score=63.66 Aligned_cols=162 Identities=14% Similarity=0.187 Sum_probs=97.2
Q ss_pred HhHHHhcCCHHHHHHHHHhccC-----CCh---hHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCCCCh--HhHHH
Q 001763 771 IDMYAKCGDVKRSAQVFDEMAE-----RNY---VISWNSMIVGFAKNGYAEDALKVFHEMKE----TQAMPDD--VTFLG 836 (1017)
Q Consensus 771 ~~~y~~~g~~~~A~~~~~~~~~-----~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p~~--~~~~~ 836 (1017)
++.|...|++++|.+.|.+... .+. ...|...+..|.+. ++++|++.+++..+ .| .|+. ..+..
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~ 119 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAAKCLKE 119 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHH
Confidence 4455555566665555554432 111 12344445555444 77777777777654 23 3333 35677
Q ss_pred HHHHcccC-CcHHHHHHHHHHhhhhcCCCcC----chhHHHHHHhhhccCCHHHHHHHHHhCC---CC-C--CHHHHHHH
Q 001763 837 VLTACSHA-GRVSEGRQIFETMVSCHGIQPR----VDHCACMVDLLGRWGFLKEAEEFIEQLT---FE-P--DSRIWTTL 905 (1017)
Q Consensus 837 l~~~~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~l~~~g~~~eA~~~~~~~~---~~-p--~~~~~~~l 905 (1017)
+...|... |++++|++.|++..+.|..... ...+..++.++.+.|++++|.+.+++.. .+ + ...+-..+
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 78888888 9999999999999885533322 3346677889999999999999998752 11 1 11122222
Q ss_pred HH---HHHhcCCchHHHHHHHHHHhhCCCCCc
Q 001763 906 LG---ACGVHRDDIRGRLAAKKLIELEPENPS 934 (1017)
Q Consensus 906 l~---~~~~~g~~~~a~~~~~~~l~~~p~~~~ 934 (1017)
+. .+...||...|...+++..+.+|....
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~ 231 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFAS 231 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 22 233568999999999999999985433
No 190
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.13 E-value=0.35 Score=51.19 Aligned_cols=108 Identities=14% Similarity=0.123 Sum_probs=77.9
Q ss_pred HHHHHhhccCChhHHHHHHhhcCCCCcccchhhhHHhHhcCCHHHHHHHHHHhhccCCCCCcccHHHHHHHhhcccCCCc
Q 001763 464 ALVDMYAKSRALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQ 543 (1017)
Q Consensus 464 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 543 (1017)
.-|.-+...|+...|.++-.+..-+|-.-|-..|.+++..+++++-.++... +-.++-|..++.+|...|...+
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHH
Confidence 3344556678888888888888888888888888999998888876665432 1234778888888888887776
Q ss_pred chhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCC
Q 001763 544 GEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMP 588 (1017)
Q Consensus 544 ~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~ 588 (1017)
|..+...+ .+..-+.+|.++|++.+|.+.--+..
T Consensus 256 A~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 256 ASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 66555431 12567889999999999987654443
No 191
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.12 E-value=0.0072 Score=55.33 Aligned_cols=106 Identities=18% Similarity=0.201 Sum_probs=92.2
Q ss_pred hhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCC--C
Q 001763 857 MVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL---TFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEP--E 931 (1017)
Q Consensus 857 m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p--~ 931 (1017)
..++..+.|+..+-..+...+.+.|+..||...+++. ++..|......+..+....++...|...++++.+-.| .
T Consensus 79 a~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r 158 (251)
T COG4700 79 ATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR 158 (251)
T ss_pred HHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC
Confidence 3334557898888888999999999999999999885 3566888888888998899999999999999999999 5
Q ss_pred CCchHHHHHHHHHhcCCcHHHHHHHHHHHHc
Q 001763 932 NPSPYVQLSNIYAALGNWNEVNTLRREMREK 962 (1017)
Q Consensus 932 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 962 (1017)
.|.....++..|...|++.+|+.-++.....
T Consensus 159 ~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 159 SPDGHLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred CCCchHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 6788999999999999999999988877654
No 192
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.10 E-value=0.0015 Score=69.67 Aligned_cols=67 Identities=10% Similarity=-0.059 Sum_probs=60.3
Q ss_pred CC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCch---HHHHHHHHHhcCCcHHHHHHHHHHHHc
Q 001763 896 EP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSP---YVQLSNIYAALGNWNEVNTLRREMREK 962 (1017)
Q Consensus 896 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~---~~~l~~~y~~~g~~~~a~~~~~~m~~~ 962 (1017)
+| +...|.+++.++...|++++|+..++++++++|++..+ |++++.+|...|+.++|.+.+++..+.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44 55689999999999999999999999999999999855 999999999999999999999888875
No 193
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.07 E-value=0.0085 Score=64.94 Aligned_cols=121 Identities=10% Similarity=0.113 Sum_probs=75.9
Q ss_pred CCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHh--cCCCCcchHHHHHHHHHcCCCchhHHHhhhcCC----CCCcc
Q 001763 150 RGGVPNGFTFAIVLSACSKSMDVSYGRQLHCHVIEL--GFESSSFCKGALIDMYAKLNNVSDARRVFDGAV----DLDTV 223 (1017)
Q Consensus 150 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~ 223 (1017)
.+.+.+......+++.+....+++.+..++-..... ....-..+..++|+.|.+.|..+.+..++..-. -||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 345567778888888888888888888887777665 222233444566666666666666666665422 25666
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhcc
Q 001763 224 SWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNL 270 (1017)
Q Consensus 224 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 270 (1017)
++|.+|..+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 66666666666666666666666666655555555555555555443
No 194
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.06 E-value=0.00081 Score=47.15 Aligned_cols=42 Identities=17% Similarity=0.359 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHH
Q 001763 900 RIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSN 941 (1017)
Q Consensus 900 ~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~ 941 (1017)
.+|..+..++...|+.++|+..++++++.+|+|+.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 468888999999999999999999999999999999998875
No 195
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.05 E-value=0.0018 Score=51.06 Aligned_cols=60 Identities=20% Similarity=0.333 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCC-cHHHHHHHHHHhhh
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAG-RVSEGRQIFETMVS 859 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 859 (1017)
.|..++..+...|++++|+..|++.++ +.|+. ..+..+..+|...| ++++|++.|++.++
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 788888888888888888888888888 56766 57788888888888 78888888888776
No 196
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.05 E-value=0.00056 Score=53.84 Aligned_cols=41 Identities=15% Similarity=0.114 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHH
Q 001763 900 RIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLS 940 (1017)
Q Consensus 900 ~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~ 940 (1017)
.++..++..+...|++++|+..+++++..+|+++..+..++
T Consensus 26 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 26 EARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 34444444455555555555555555555554444444433
No 197
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.04 E-value=0.039 Score=56.10 Aligned_cols=60 Identities=12% Similarity=-0.086 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCC--CCCceee---hhhhhhcccCCCchHHHHHHHHHHHC
Q 001763 664 LHIALLSMYMNSKRNTDARLLFTEFPN--PKSTVLW---TAVISGHAQNDSNYEALHFYREMRSH 723 (1017)
Q Consensus 664 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~ 723 (1017)
.....+..+.+.|++++|.+.|+++.. |.+...- -.++.+|.+.+++++|+..|++.++.
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 333444555566666666666666544 2222111 23445555566666666666665553
No 198
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.97 E-value=0.0082 Score=61.43 Aligned_cols=100 Identities=13% Similarity=0.156 Sum_probs=65.8
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCh----HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhh
Q 001763 803 IVGFAKNGYAEDALKVFHEMKETQAMPDD----VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLG 878 (1017)
Q Consensus 803 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~ 878 (1017)
...+.+.|++++|+..|+++++. .|+. ..+..++.+|...|++++|+..|+.+++.|...|.
T Consensus 150 ~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~------------ 215 (263)
T PRK10803 150 IALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK------------ 215 (263)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc------------
Confidence 33335567888888888888873 4654 35566777777788888888887777764322211
Q ss_pred ccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCch
Q 001763 879 RWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSP 935 (1017)
Q Consensus 879 ~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~ 935 (1017)
.+..|..++..+...|+.+.|+..++++++..|++..+
T Consensus 216 -------------------~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 216 -------------------AADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred -------------------hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 12344445556667788888888888888888865543
No 199
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.95 E-value=0.37 Score=49.17 Aligned_cols=216 Identities=18% Similarity=0.154 Sum_probs=144.8
Q ss_pred CcHHHHHHHHHHHHHhCCC-CCcchHhHHHhHHHhcCCHHHHHHHHHhccC----CChhHHHHHHHHHHHhCCCHHHHHH
Q 001763 743 SSLRDGGEIHSLIFHTGYD-LDEITGSALIDMYAKCGDVKRSAQVFDEMAE----RNYVISWNSMIVGFAKNGYAEDALK 817 (1017)
Q Consensus 743 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~ 817 (1017)
+....+...+......... ............+...+++..+...+..... ......+......+...+++.++++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444443332 1346667777888888888888888876642 3333366677777778888888888
Q ss_pred HHHHHHHCCCCCChHhHHHHHH-HcccCCcHHHHHHHHHHhhhhcCCCc----CchhHHHHHHhhhccCCHHHHHHHHHh
Q 001763 818 VFHEMKETQAMPDDVTFLGVLT-ACSHAGRVSEGRQIFETMVSCHGIQP----RVDHCACMVDLLGRWGFLKEAEEFIEQ 892 (1017)
Q Consensus 818 ~~~~m~~~g~~p~~~~~~~l~~-~~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~l~~~l~~~g~~~eA~~~~~~ 892 (1017)
.+.........+. ........ ++...|++++|...|+.... ..| ....+......+...++.++|...+.+
T Consensus 117 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 117 LLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 8888887433321 22222223 67888888888888888744 333 223333344446677888888888877
Q ss_pred C-CCCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHc
Q 001763 893 L-TFEPD--SRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREK 962 (1017)
Q Consensus 893 ~-~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 962 (1017)
. ...++ ...+..+...+...++.+.+...+.++++..|.....+..++..+...|+++++.....+....
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 193 ALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5 33333 5577777777888888888999999999888876777788888888777788888777666554
No 200
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.94 E-value=0.034 Score=52.44 Aligned_cols=186 Identities=16% Similarity=0.131 Sum_probs=117.0
Q ss_pred hHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHH
Q 001763 772 DMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVS 848 (1017)
Q Consensus 772 ~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~ 848 (1017)
..|-..|-+.-|+.-|.+... |+....+|-+.--+...|+++.|.+.|+...+ +.|.- .+..+-.-++.-.|++.
T Consensus 73 vlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~ 150 (297)
T COG4785 73 VLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYK 150 (297)
T ss_pred chhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchH
Confidence 345555666666666665543 66665788888888888999999999999988 56644 56666666777889999
Q ss_pred HHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhh
Q 001763 849 EGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIEL 928 (1017)
Q Consensus 849 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~ 928 (1017)
-|.+-|.+.-. -.|+...-.-..-+-.+.=+..+|..-+.+--..-|..-|..-+-.+.. |.... +.+++++.+-
T Consensus 151 LAq~d~~~fYQ---~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS~-e~l~~~~~a~ 225 (297)
T COG4785 151 LAQDDLLAFYQ---DDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKISE-ETLMERLKAD 225 (297)
T ss_pred hhHHHHHHHHh---cCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhccH-HHHHHHHHhh
Confidence 88887776643 3333222111122223444566776554432224455577776644432 22211 2233344333
Q ss_pred CCCC-------CchHHHHHHHHHhcCCcHHHHHHHHHHHHcCC
Q 001763 929 EPEN-------PSPYVQLSNIYAALGNWNEVNTLRREMREKGV 964 (1017)
Q Consensus 929 ~p~~-------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 964 (1017)
..+| .++|+.|+..|...|+.++|..+++.....++
T Consensus 226 a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 226 ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 3332 56899999999999999999999987765443
No 201
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.89 E-value=0.066 Score=53.02 Aligned_cols=169 Identities=14% Similarity=0.146 Sum_probs=96.9
Q ss_pred chHhHHHhHHHhcCCHHHHHHHHHhccC--CCh---hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh--HhHHHH
Q 001763 765 ITGSALIDMYAKCGDVKRSAQVFDEMAE--RNY---VISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD--VTFLGV 837 (1017)
Q Consensus 765 ~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l 837 (1017)
......+..+...|++++|++.|+.+.. |+. ..+...++.++.+.|++++|+..+++.++. .|+. ..+...
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y 83 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALY 83 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHH
Confidence 3444556666677778888887777764 221 135667777888888888888888887773 4543 222211
Q ss_pred HHH-------------cccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhCCCCCCHHH--H
Q 001763 838 LTA-------------CSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQLTFEPDSRI--W 902 (1017)
Q Consensus 838 ~~~-------------~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~~~~p~~~~--~ 902 (1017)
..+ ....+...+|...|+.+++.|.- .....+|...+..+. +... -
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~----------------S~y~~~A~~~l~~l~---~~la~~e 144 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN----------------SEYAEEAKKRLAELR---NRLAEHE 144 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT----------------STTHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcC----------------chHHHHHHHHHHHHH---HHHHHHH
Confidence 111 12233344566666666654432 223333333332221 0000 0
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhCCCCC---chHHHHHHHHHhcCCcHHHHH
Q 001763 903 TTLLGACGVHRDDIRGRLAAKKLIELEPENP---SPYVQLSNIYAALGNWNEVNT 954 (1017)
Q Consensus 903 ~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~---~~~~~l~~~y~~~g~~~~a~~ 954 (1017)
...+..+.+.|.+..|..-++.+++..|+.+ .+...+...|.+.|..+.|..
T Consensus 145 ~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 145 LYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 1234557788999999999999999999753 467888999999999884443
No 202
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.016 Score=60.64 Aligned_cols=61 Identities=15% Similarity=0.161 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 001763 901 IWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMRE 961 (1017)
Q Consensus 901 ~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 961 (1017)
++.+|...|.+.+++..|+....++|+++|+|..+++.-+.+|...|+++.|...++++++
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 4455555566667777777777777777777777777777777777777777777777665
No 203
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.80 E-value=0.022 Score=59.56 Aligned_cols=134 Identities=19% Similarity=0.212 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH-cccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHh
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTA-CSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDL 876 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 876 (1017)
+|..++....+.+..+.|-.+|.+.++.+ .-+...|...+.. |...++.+.|..+|+...+.++ .+...+...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~--~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP--SDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT--T-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHH
Confidence 57777777777777777888888877532 1123445544444 3335566668888888877543 344556667777
Q ss_pred hhccCCHHHHHHHHHhC-C-CCCC---HHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCc
Q 001763 877 LGRWGFLKEAEEFIEQL-T-FEPD---SRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPS 934 (1017)
Q Consensus 877 l~~~g~~~eA~~~~~~~-~-~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~ 934 (1017)
+.+.|+.+.|..++++. . +.++ ..+|...+..-..+|+.+....+.+++.+..|++..
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 78888888888888774 2 2222 248999999988999999999999999999887443
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.027 Score=54.78 Aligned_cols=133 Identities=11% Similarity=0.077 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcC----CCcCchhHHHH
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHG----IQPRVDHCACM 873 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~----~~p~~~~~~~l 873 (1017)
.-+.++..+.-+|.+.-.+.++++.++....-+......|++.-.+.|+.+.|...|+.+.+.-+ +.-+.-..-++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34677888888889999999999999954333556677888888999999999999998765322 11111222223
Q ss_pred HHhhhccCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHH-hcCCchHHHHHHHHHHhhCC
Q 001763 874 VDLLGRWGFLKEAEEFIEQLTF-EPDSRIWTTLLGACG-VHRDDIRGRLAAKKLIELEP 930 (1017)
Q Consensus 874 ~~~l~~~g~~~eA~~~~~~~~~-~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~l~~~p 930 (1017)
..++.-++++.+|..++.+.+. .|...++.+--..|. -.|+...|++..+.+++..|
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 3344444555555555554432 222222222111111 23555555555555555555
No 205
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.032 Score=56.26 Aligned_cols=105 Identities=10% Similarity=0.084 Sum_probs=75.8
Q ss_pred HHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhC-C--CHHHHHHHHHHHHHCC
Q 001763 752 HSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKN-G--YAEDALKVFHEMKETQ 826 (1017)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~m~~~g 826 (1017)
++.-+..++. |..-|..|+..|...|++++|...|....+ ++....+..+..++... | ...++..+|++++.
T Consensus 145 Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~-- 221 (287)
T COG4235 145 LETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA-- 221 (287)
T ss_pred HHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--
Confidence 3444555665 888888888888888888888888887765 33332555555554332 2 45678889999888
Q ss_pred CCCChH-hHHHHHHHcccCCcHHHHHHHHHHhhh
Q 001763 827 AMPDDV-TFLGVLTACSHAGRVSEGRQIFETMVS 859 (1017)
Q Consensus 827 ~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~ 859 (1017)
.+|+++ +...|...+...|++.+|...|+.|.+
T Consensus 222 ~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 222 LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 567664 556666778889999999999999887
No 206
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.74 E-value=0.0033 Score=50.28 Aligned_cols=66 Identities=17% Similarity=0.226 Sum_probs=51.3
Q ss_pred HhhhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHH
Q 001763 875 DLLGRWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLS 940 (1017)
Q Consensus 875 ~~l~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~ 940 (1017)
.+|.+.+++++|.+.++.+ ...| ++..|...+..+...|+++.|...++++++..|+++......+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 4567777888888877775 3556 4457878888888999999999999999999998877665543
No 207
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.73 E-value=0.018 Score=50.54 Aligned_cols=92 Identities=12% Similarity=0.053 Sum_probs=59.0
Q ss_pred hhhhcccCCCchHHHHHHHHHHHCCCCcC--HHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCC--CcchHhHHHhHHH
Q 001763 700 VISGHAQNDSNYEALHFYREMRSHNVLPD--QATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDL--DEITGSALIDMYA 775 (1017)
Q Consensus 700 li~~~~~~g~~~~A~~~~~~m~~~~~~pd--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~y~ 775 (1017)
+..++-..|+.++|+.+|++....|.... ...+..+.+++...|++++|..+++......+.. +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34456667888888888888888776544 2456666777777888888888877776654431 2223333445566
Q ss_pred hcCCHHHHHHHHHhcc
Q 001763 776 KCGDVKRSAQVFDEMA 791 (1017)
Q Consensus 776 ~~g~~~~A~~~~~~~~ 791 (1017)
..|+.++|.+.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 6677777776654433
No 208
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.72 E-value=0.019 Score=48.32 Aligned_cols=88 Identities=11% Similarity=0.106 Sum_probs=68.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCChhhHHHHHHHHhccCCHHHHHHHHHhcCCCCccchHHHHHHHhccCC
Q 001763 225 WTSMIAGYVQAGLPEAAFELFEKMIKVGC-VPDQVAFVTVINVCFNLGRLDEARELFAQMQNPNVVAWNVMISGHAKRGY 303 (1017)
Q Consensus 225 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~ 303 (1017)
-...|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..--..+ -.++
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~-----------------------ie~k 84 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSED-----------------------IENK 84 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchh-----------------------HHHH
Confidence 34567777778999999999999999999 99999999999987764311111 1123
Q ss_pred chHHHHHHHHHHhcCCCCChhhHHHHHHHHhc
Q 001763 304 DAEAVNYFKRMRKAGVKSSRSTLGSVLSGISS 335 (1017)
Q Consensus 304 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 335 (1017)
.-+.+.+|+.|...+++|+..||+.++..+.+
T Consensus 85 l~~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 85 LTNLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 45677889999999999999999999887643
No 209
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.69 E-value=0.012 Score=49.44 Aligned_cols=80 Identities=9% Similarity=0.051 Sum_probs=67.6
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHhCCC-CCChhhHHHHHHHhhcCC--------ChhHHHHHHHHHHHhcCCCCcchH
Q 001763 124 WNSILSMYSKRGSFENVFKSFGLLCNRGG-VPNGFTFAIVLSACSKSM--------DVSYGRQLHCHVIELGFESSSFCK 194 (1017)
Q Consensus 124 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~ 194 (1017)
--..|..+...+++.....+|+.+.+.|+ .|+..+|+.+|.+.++.. .+-....+++.|+..++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34567777778999999999999999999 899999999999987663 245677889999999999999999
Q ss_pred HHHHHHHHc
Q 001763 195 GALIDMYAK 203 (1017)
Q Consensus 195 ~~li~~~~~ 203 (1017)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887755
No 210
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.63 E-value=1.4 Score=49.37 Aligned_cols=103 Identities=17% Similarity=0.219 Sum_probs=63.2
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 001763 659 FDDDFLHIALLSMYMNSKRNTDARLLFTEFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRA 738 (1017)
Q Consensus 659 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~ 738 (1017)
|.+....-.+++|+.+.|.-++|.+.|-+...|+. -+..|...+++.+|+++-++.. -|...|+.+-
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pka------Av~tCv~LnQW~~avelaq~~~----l~qv~tliak--- 915 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKA------AVHTCVELNQWGEAVELAQRFQ----LPQVQTLIAK--- 915 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHhccCcHH------HHHHHHHHHHHHHHHHHHHhcc----chhHHHHHHH---
Confidence 46777777888888888988888888776655322 2445666777888887766653 3333332211
Q ss_pred HhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC
Q 001763 739 CAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE 792 (1017)
Q Consensus 739 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~ 792 (1017)
.|-++++ + + . .---|..+.++|+.=+|.+++.+|.+
T Consensus 916 --------~aaqll~---~-~-----~-~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 916 --------QAAQLLA---D-A-----N-HMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred --------HHHHHHh---h-c-----c-hHHHHHHhhhcccchhHHHHHHHHhH
Confidence 1111111 0 0 0 11235677888888888888888865
No 211
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.59 E-value=0.71 Score=47.01 Aligned_cols=229 Identities=17% Similarity=0.118 Sum_probs=154.9
Q ss_pred CchHHHHHHHHHHHCCCC-cCHHhHHHHHHHHhccCcHHHHHHHHHHHHHh-CCCCCcchHhHHHhHHHhcCCHHHHHHH
Q 001763 709 SNYEALHFYREMRSHNVL-PDQATFVSVLRACAVLSSLRDGGEIHSLIFHT-GYDLDEITGSALIDMYAKCGDVKRSAQV 786 (1017)
Q Consensus 709 ~~~~A~~~~~~m~~~~~~-pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~y~~~g~~~~A~~~ 786 (1017)
....+...+......... ............+...+.+..+...+...... ........+..+...+...+++.++.+.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 334444555555443211 12455556666677777777777777766652 2223556677778888888888888888
Q ss_pred HHhccC--CChhHHHHHHHH-HHHhCCCHHHHHHHHHHHHHCCCCC----ChHhHHHHHHHcccCCcHHHHHHHHHHhhh
Q 001763 787 FDEMAE--RNYVISWNSMIV-GFAKNGYAEDALKVFHEMKETQAMP----DDVTFLGVLTACSHAGRVSEGRQIFETMVS 859 (1017)
Q Consensus 787 ~~~~~~--~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 859 (1017)
+..... +.....+..... .+...|++++|...+++... ..| ....+......+...++.+++...+.....
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 118 LEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 887765 222113333344 78889999999999999866 344 223445555557788899999999999877
Q ss_pred hcCCCcC--chhHHHHHHhhhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCch
Q 001763 860 CHGIQPR--VDHCACMVDLLGRWGFLKEAEEFIEQL-TFEPD-SRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSP 935 (1017)
Q Consensus 860 ~~~~~p~--~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~ 935 (1017)
..|. ...+..+...+...|.+++|...+... ...|+ ...+..+...+...++.+.+...+++.++..|.
T Consensus 196 ---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 268 (291)
T COG0457 196 ---LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD---- 268 (291)
T ss_pred ---hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc----
Confidence 3333 567778888888899999999988775 34554 456666666665677899999999999999997
Q ss_pred HHHHHHHHHhc
Q 001763 936 YVQLSNIYAAL 946 (1017)
Q Consensus 936 ~~~l~~~y~~~ 946 (1017)
+..++..+...
T Consensus 269 ~~~~~~~~~~~ 279 (291)
T COG0457 269 LYNLGLALLLL 279 (291)
T ss_pred hhhhhHHHHHH
Confidence 44444444443
No 212
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.57 E-value=1 Score=47.71 Aligned_cols=107 Identities=14% Similarity=0.179 Sum_probs=81.8
Q ss_pred hhHHHHHHHHccCChhHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHhhhhcCCCCChhcHHHHHHhhhcccc
Q 001763 360 VASSLINMYAKCEKMESAKKVFDSLDERNAVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLEY 439 (1017)
Q Consensus 360 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 439 (1017)
+.+..|.-+...|+...|.++-.+..-++...|...+.+++..++|++-..+... +-.+..|-.++.+|...|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3444566667789999999999888888888999999999999999877765432 2345788888999988888
Q ss_pred hHhhHHHHHHHHHhcCCchhhHHHHHHHHhhccCChhHHHHHH
Q 001763 440 LEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQF 482 (1017)
Q Consensus 440 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f 482 (1017)
..+|..+...+ .+..-+.+|.++|++.+|.+.-
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence 88887776652 1245677888899988886653
No 213
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.50 E-value=0.2 Score=53.30 Aligned_cols=163 Identities=18% Similarity=0.147 Sum_probs=105.3
Q ss_pred hHhHHHhHHHhcCCHHHHHHHHHhccCCC---hh---HHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCCCChHhHHH
Q 001763 766 TGSALIDMYAKCGDVKRSAQVFDEMAERN---YV---ISWNSMIVGFAK---NGYAEDALKVFHEMKETQAMPDDVTFLG 836 (1017)
Q Consensus 766 ~~~~l~~~y~~~g~~~~A~~~~~~~~~~~---~~---~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 836 (1017)
+...|.-.|....+++.-+++.+.+.... .. ..-...+-++.+ .|+.++|++++..++...-.++..+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 33345556778888888888888777631 11 122344556666 7889999999988666555566667766
Q ss_pred HHHHcc---------cCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHH----HHHH---H-----hCCC
Q 001763 837 VLTACS---------HAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEA----EEFI---E-----QLTF 895 (1017)
Q Consensus 837 l~~~~~---------~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA----~~~~---~-----~~~~ 895 (1017)
++..|- .....++|+..|.+. +.+.|+.-+=-+++.++..+|...+. .++. . +-..
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 665432 234578888888876 44666654444555566666643322 2222 1 1112
Q ss_pred CCCHHHH--HHHHHHHHhcCCchHHHHHHHHHHhhCCC
Q 001763 896 EPDSRIW--TTLLGACGVHRDDIRGRLAAKKLIELEPE 931 (1017)
Q Consensus 896 ~p~~~~~--~~ll~~~~~~g~~~~a~~~~~~~l~~~p~ 931 (1017)
.+...-| .+++.++...||.+.|..++++++.+.|+
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 3444444 57889999999999999999999999875
No 214
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.025 Score=59.23 Aligned_cols=96 Identities=17% Similarity=0.113 Sum_probs=71.6
Q ss_pred hHHHHHHhhhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhc
Q 001763 869 HCACMVDLLGRWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAAL 946 (1017)
Q Consensus 869 ~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~ 946 (1017)
.+.++.-+|.+.+++.+|++..+++ ..+| |.-...--+.+|...|+++.|+..++++++++|+|-.+..-|+.+-.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 3444555566666666666666554 3444 4446666778888999999999999999999999999999999888877
Q ss_pred CCcHHH-HHHHHHHHHcCC
Q 001763 947 GNWNEV-NTLRREMREKGV 964 (1017)
Q Consensus 947 g~~~~a-~~~~~~m~~~~~ 964 (1017)
.++.+. .++|..|-.+-.
T Consensus 339 ~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 339 REYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHhhccc
Confidence 776655 778888876533
No 215
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.43 E-value=0.018 Score=55.02 Aligned_cols=96 Identities=13% Similarity=0.259 Sum_probs=72.8
Q ss_pred HHhccc--CCCCchhHHHHHHHHH-----cCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHhhcC--------------
Q 001763 111 KVFDRL--EDRDILAWNSILSMYS-----KRGSFENVFKSFGLLCNRGGVPNGFTFAIVLSACSKS-------------- 169 (1017)
Q Consensus 111 ~~f~~~--~~~~~~~~~~li~~~~-----~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-------------- 169 (1017)
..|+.. ..+|-.+|..+|..|. +.|+.+-....+..|.+.|+.-|..+|+.||..+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 345544 4566677777777775 3467777777888899999999999999999887653
Q ss_pred --CChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHcCCC
Q 001763 170 --MDVSYGRQLHCHVIELGFESSSFCKGALIDMYAKLNN 206 (1017)
Q Consensus 170 --~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 206 (1017)
.+.+.|.+++++|...|+-||..++..|++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2356788888899888988888888888888876554
No 216
>PRK11906 transcriptional regulator; Provisional
Probab=96.35 E-value=0.056 Score=58.22 Aligned_cols=143 Identities=13% Similarity=0.062 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHH-CCCCCCh-HhHHHHHHHcc---------cCCcHHHHHHHHHHhhhhcCCCc-CchhHHHHHHhhhc
Q 001763 812 AEDALKVFHEMKE-TQAMPDD-VTFLGVLTACS---------HAGRVSEGRQIFETMVSCHGIQP-RVDHCACMVDLLGR 879 (1017)
Q Consensus 812 ~~~A~~~~~~m~~-~g~~p~~-~~~~~l~~~~~---------~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~l~~ 879 (1017)
.+.|+.+|.+.+. ..++|+. ..|..+..++. ......+|.+.-++.++ +.| |+.....+.-++.-
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve---ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD---ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHh
Confidence 3466677777771 1256654 23333322211 12334455555555554 333 33344455555566
Q ss_pred cCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHH-HHhcCCcHHHHHHH
Q 001763 880 WGFLKEAEEFIEQL-TFEPDSR-IWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNI-YAALGNWNEVNTLR 956 (1017)
Q Consensus 880 ~g~~~eA~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~-y~~~g~~~~a~~~~ 956 (1017)
.|+++.|..++++. .+.||.. +|...+..+.-.|+.++|....+++++++|....+-+.--++ .+-....++|.+++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLY 430 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHH
Confidence 66677777777765 4677654 777777777778888888888888888888777666655555 33344557777776
Q ss_pred H
Q 001763 957 R 957 (1017)
Q Consensus 957 ~ 957 (1017)
-
T Consensus 431 ~ 431 (458)
T PRK11906 431 Y 431 (458)
T ss_pred h
Confidence 3
No 217
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.29 E-value=0.0055 Score=49.76 Aligned_cols=60 Identities=13% Similarity=0.170 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhh----C---CCCCchHHHHHHHHHhcCCcHHHHHHHHHHH
Q 001763 901 IWTTLLGACGVHRDDIRGRLAAKKLIEL----E---PENPSPYVQLSNIYAALGNWNEVNTLRREMR 960 (1017)
Q Consensus 901 ~~~~ll~~~~~~g~~~~a~~~~~~~l~~----~---p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 960 (1017)
++..++..+...|++++|+..+++++++ . |+-...+..+|++|...|++++|.+.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555566666666666666666666654 1 1124457777777777777777777766544
No 218
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.26 E-value=0.047 Score=59.32 Aligned_cols=120 Identities=13% Similarity=0.142 Sum_probs=83.8
Q ss_pred CCCCChhhHHHHHHHHhccCCHHHHHHHHHhcCC-CC-----ccchHHHHHHHhccCCchHHHHHHHHHHhcCCCCChhh
Q 001763 252 GCVPDQVAFVTVINVCFNLGRLDEARELFAQMQN-PN-----VVAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRST 325 (1017)
Q Consensus 252 g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~-~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 325 (1017)
+.+.+......+++.+....+++.+..++-+... |+ ..|..++|+.|.+.|..++++.++..=...|+-||.+|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 4455677777778887777778887777766653 22 23456778888888888888888887777788888888
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHhCCCCchhhhHHHHHHHHcc
Q 001763 326 LGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKC 371 (1017)
Q Consensus 326 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 371 (1017)
++.++..+.+.|++..|.++...|...+...+..++..-+..+.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8877777777777777777777777766655555554444444333
No 219
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.19 E-value=0.12 Score=51.24 Aligned_cols=142 Identities=13% Similarity=0.141 Sum_probs=84.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh----HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCch-hHHH
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD----VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVD-HCAC 872 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~ 872 (1017)
.+...+..+...|++++|++.|+++... -|+. .....++.++...|++++|+..|+..++.|+-.|... .+-.
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 4566777888999999999999999985 3432 3566788889999999999999999998776666543 2221
Q ss_pred HHHhhhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCC-----------------ch
Q 001763 873 MVDLLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENP-----------------SP 935 (1017)
Q Consensus 873 l~~~l~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~-----------------~~ 935 (1017)
++..+... ....+ ...+.++....|...++.+++..|+++ .-
T Consensus 85 ~g~~~~~~-----~~~~~----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~ 143 (203)
T PF13525_consen 85 LGLSYYKQ-----IPGIL----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEH 143 (203)
T ss_dssp HHHHHHHH-----HHHHH-----------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-----Cccch----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHH
Confidence 22111100 00000 001122333444455555555555432 23
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHc
Q 001763 936 YVQLSNIYAALGNWNEVNTLRREMREK 962 (1017)
Q Consensus 936 ~~~l~~~y~~~g~~~~a~~~~~~m~~~ 962 (1017)
-...+..|.+.|+|..|..-++.+.+.
T Consensus 144 e~~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 144 ELYIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 455688999999999999988877753
No 220
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.13 E-value=0.046 Score=46.99 Aligned_cols=89 Identities=22% Similarity=0.231 Sum_probs=55.1
Q ss_pred hhhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC----CchHHHHHHHHHhcCCc
Q 001763 876 LLGRWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPEN----PSPYVQLSNIYAALGNW 949 (1017)
Q Consensus 876 ~l~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~----~~~~~~l~~~y~~~g~~ 949 (1017)
++...|++++|++.|.+. .+-| .+..|++-..+++.+|+.+.|..-+++++++.-+. -.+|+.-+-+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 455566666666666553 2222 45566666677777777777777777777764322 23466667777777777
Q ss_pred HHHHHHHHHHHHcCC
Q 001763 950 NEVNTLRREMREKGV 964 (1017)
Q Consensus 950 ~~a~~~~~~m~~~~~ 964 (1017)
++|..-++..-+.|.
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 777776666666554
No 221
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.12 E-value=0.075 Score=49.49 Aligned_cols=107 Identities=18% Similarity=0.160 Sum_probs=70.0
Q ss_pred cccCCcHHHHHHHHHHhhhhcCCCc--CchhHHHHHHhhhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHH
Q 001763 841 CSHAGRVSEGRQIFETMVSCHGIQP--RVDHCACMVDLLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRG 918 (1017)
Q Consensus 841 ~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~l~~~l~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 918 (1017)
....|+.+++.+.++++...|.-++ +... ..-.....+.+++.- ..+...++..+...|+++.|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~----~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY----LDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH----HHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH----HHHHHHHHHHHHhccCHHHH
Confidence 3456677777777777776553221 2111 011111122222210 12455667778889999999
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 001763 919 RLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMRE 961 (1017)
Q Consensus 919 ~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 961 (1017)
+..+++++..+|.+-..|..|..+|...|+..+|.+.++++..
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888754
No 222
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.11 E-value=0.057 Score=56.46 Aligned_cols=126 Identities=14% Similarity=0.125 Sum_probs=53.3
Q ss_pred ehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHH-HhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHH
Q 001763 697 WTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRA-CAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYA 775 (1017)
Q Consensus 697 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~ 775 (1017)
|-.++....+.+..+.|-.+|.+..+.+ ..+...|...... +...++.+.|..+|+..++.-+. +...+...++.+.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~-~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS-DPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 4444444444444555555555554321 1112222222222 22234444455555555444322 4444555555555
Q ss_pred hcCCHHHHHHHHHhccCC---C--hhHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 001763 776 KCGDVKRSAQVFDEMAER---N--YVISWNSMIVGFAKNGYAEDALKVFHEMKE 824 (1017)
Q Consensus 776 ~~g~~~~A~~~~~~~~~~---~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 824 (1017)
+.|+.+.|+.+|++.... . ....|...+.--.+.|+.+.+.++.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555544431 0 112455555555555555555555555554
No 223
>PRK11906 transcriptional regulator; Provisional
Probab=96.07 E-value=0.052 Score=58.43 Aligned_cols=120 Identities=10% Similarity=0.035 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhhhhcCCCcCc-hhHHHHHHhhh---------ccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 001763 847 VSEGRQIFETMVSCHGIQPRV-DHCACMVDLLG---------RWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRD 914 (1017)
Q Consensus 847 ~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~l~---------~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 914 (1017)
.+.|..+|.+.+..-.+.|+. ..|..+..++. ......+|.++.++. .+.| |+.+...++.+....++
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence 467888999988434477764 45555543321 233456677777664 4555 66677777777777888
Q ss_pred chHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCCcc
Q 001763 915 DIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVKK 966 (1017)
Q Consensus 915 ~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~ 966 (1017)
++.|...+++++.++|+.+.+++..|++.+-.|+.++|.+..++..+....+
T Consensus 354 ~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 354 AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 9999999999999999999999999999999999999999888755544433
No 224
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.88 E-value=0.017 Score=46.77 Aligned_cols=58 Identities=14% Similarity=0.246 Sum_probs=26.3
Q ss_pred hHhHHHhHHHhcCCHHHHHHHHHhccC---------CChhHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 001763 766 TGSALIDMYAKCGDVKRSAQVFDEMAE---------RNYVISWNSMIVGFAKNGYAEDALKVFHEMK 823 (1017)
Q Consensus 766 ~~~~l~~~y~~~g~~~~A~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 823 (1017)
+++.++.+|...|++++|+..|++... ++...+++.++..|...|++++|++.+++.+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344455555555555555555543321 0111234445555555555555555554443
No 225
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.83 E-value=3.3 Score=44.38 Aligned_cols=85 Identities=18% Similarity=0.117 Sum_probs=59.5
Q ss_pred HHHHHHHHHHCCCCCChH----hHHHHHHH--cccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHH
Q 001763 815 ALKVFHEMKETQAMPDDV----TFLGVLTA--CSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEE 888 (1017)
Q Consensus 815 A~~~~~~m~~~g~~p~~~----~~~~l~~~--~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~ 888 (1017)
-+.+-+-+.+.|+.|-.+ .-+.|..| ....|++.++.-.-..+.+ +.|++.+|.-++-.+....+++||.+
T Consensus 440 LlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~---iaPS~~~~RLlGl~l~e~k~Y~eA~~ 516 (549)
T PF07079_consen 440 LLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK---IAPSPQAYRLLGLCLMENKRYQEAWE 516 (549)
T ss_pred HHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 334444445667776332 22333333 4568999998877666665 89999999999988999999999999
Q ss_pred HHHhCCCCCCHHHHHH
Q 001763 889 FIEQLTFEPDSRIWTT 904 (1017)
Q Consensus 889 ~~~~~~~~p~~~~~~~ 904 (1017)
++.++| |+..+|.+
T Consensus 517 ~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 517 YLQKLP--PNERMRDS 530 (549)
T ss_pred HHHhCC--CchhhHHH
Confidence 999977 35555554
No 226
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=95.78 E-value=0.08 Score=50.74 Aligned_cols=88 Identities=11% Similarity=0.160 Sum_probs=58.1
Q ss_pred CCccchHHHHHHHh-----ccCCchHHHHHHHHHHhcCCCCChhhHHHHHHHHhcc----------------cchhHHHH
Q 001763 286 PNVVAWNVMISGHA-----KRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLSGISSL----------------AALDFGLI 344 (1017)
Q Consensus 286 ~~~~~~~~li~~~~-----~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----------------~~~~~a~~ 344 (1017)
.|-.+|..++..|. +.|..+-....+..|.+-|+.-|..+|+.||..+-+. .+-+-|..
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 33344444444443 3466666666677777777777777777777665432 23456788
Q ss_pred HHHHHHHhCCCCchhhhHHHHHHHHccCC
Q 001763 345 VHAEAIKQGLYSNVYVASSLINMYAKCEK 373 (1017)
Q Consensus 345 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 373 (1017)
++++|...|+-||..++..|++.+.+.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 88888888888888888888888865543
No 227
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.76 E-value=0.31 Score=52.71 Aligned_cols=100 Identities=14% Similarity=0.236 Sum_probs=58.4
Q ss_pred HHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhCC-C-CCCHH--HHHHHHHHHHh
Q 001763 836 GVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQLT-F-EPDSR--IWTTLLGACGV 911 (1017)
Q Consensus 836 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~~-~-~p~~~--~~~~ll~~~~~ 911 (1017)
.|..++.+.|+.+||++.|+.|.+++...-+......++..|...+++.|+..++.+-. + -|.+. .|+..+-..+.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa 343 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA 343 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence 34555556777777777777776644322233345567777777777777777776653 1 24444 34433323332
Q ss_pred cCC---------------chHHHHHHHHHHhhCCCCCch
Q 001763 912 HRD---------------DIRGRLAAKKLIELEPENPSP 935 (1017)
Q Consensus 912 ~g~---------------~~~a~~~~~~~l~~~p~~~~~ 935 (1017)
-+| ...|.++.+++++.+|.-+..
T Consensus 344 v~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 344 VGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred hccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 232 123668899999999965543
No 228
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.75 E-value=0.3 Score=47.77 Aligned_cols=127 Identities=10% Similarity=0.058 Sum_probs=63.2
Q ss_pred hhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcch-----HhHHHh
Q 001763 698 TAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEIT-----GSALID 772 (1017)
Q Consensus 698 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~l~~ 772 (1017)
+.++..+.-.|++.-.+.++++.++...+.+..-...+.+.-.+.||.+.|...++.+.+..-..+... .-....
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 344444555555555566666665543333444455555555666666666666665543322222222 222233
Q ss_pred HHHhcCCHHHHHHHHHhccCCChh--HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 001763 773 MYAKCGDVKRSAQVFDEMAERNYV--ISWNSMIVGFAKNGYAEDALKVFHEMKE 824 (1017)
Q Consensus 773 ~y~~~g~~~~A~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 824 (1017)
.|.-+.++.+|...|+++...|.. ..-|+-+-+..-.|+..+|++..+.|++
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444455555555555555542221 1334434444445566666666666655
No 229
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=95.61 E-value=0.0066 Score=53.02 Aligned_cols=26 Identities=50% Similarity=0.995 Sum_probs=21.5
Q ss_pred CceeEEEECCEEEEEecCCCCCCChHHHHH
Q 001763 968 PGCSWIVLGQNTNFFVAGDTSHPNADRICA 997 (1017)
Q Consensus 968 ~g~s~i~~~~~~~~f~~~d~~~~~~~~~~~ 997 (1017)
.||||+++ |.|++||++||+...+++
T Consensus 1 ~~~~w~~~----h~F~sgd~shp~~~~~~~ 26 (116)
T PF14432_consen 1 GGCSWIEV----HSFVSGDRSHPQSELINK 26 (116)
T ss_pred CCCCccce----EEEEeCCCcCccHHHHHH
Confidence 38999987 999999999999944443
No 230
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.58 E-value=0.041 Score=59.13 Aligned_cols=62 Identities=15% Similarity=0.031 Sum_probs=34.9
Q ss_pred CcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChh---HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 001763 763 DEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYV---ISWNSMIVGFAKNGYAEDALKVFHEMKE 824 (1017)
Q Consensus 763 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 824 (1017)
+...++.++.+|.+.|++++|+..|++..+ |+.. .+|+++..+|...|+.++|++.+++.++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555566666666666666666665443 3222 1356666666666666666666666655
No 231
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.53 E-value=0.17 Score=45.37 Aligned_cols=73 Identities=22% Similarity=0.168 Sum_probs=52.1
Q ss_pred hhhccCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCc---hHHHHHHHHHhcC
Q 001763 876 LLGRWGFLKEAEEFIEQL----TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPS---PYVQLSNIYAALG 947 (1017)
Q Consensus 876 ~l~~~g~~~eA~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~---~~~~l~~~y~~~g 947 (1017)
...+.|++++|.+.++.+ |..| ....-..|+.++...++++.|...+++.++++|.++. +++..|-++....
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQD 98 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHh
Confidence 345667777777777665 3333 2335666788899999999999999999999997654 4666666666665
Q ss_pred C
Q 001763 948 N 948 (1017)
Q Consensus 948 ~ 948 (1017)
.
T Consensus 99 ~ 99 (142)
T PF13512_consen 99 E 99 (142)
T ss_pred h
Confidence 4
No 232
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.53 E-value=0.3 Score=50.12 Aligned_cols=224 Identities=11% Similarity=-0.013 Sum_probs=137.7
Q ss_pred ccCCCchHHHHHHHHHHHCC--CCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHh--CCC---CCcchHhHHHhHHHhc
Q 001763 705 AQNDSNYEALHFYREMRSHN--VLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHT--GYD---LDEITGSALIDMYAKC 777 (1017)
Q Consensus 705 ~~~g~~~~A~~~~~~m~~~~--~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~---~~~~~~~~l~~~y~~~ 777 (1017)
.+..+.++|+..+.+-+.+- ..-...++..+..+.+..|.++++...--..+.. ..+ .--+.|..+...+.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666654420 0111244555666677777777665543222111 111 1123455666777777
Q ss_pred CCHHHHHHHHHhccC-CChh------HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-Ch----HhHHHHHHHcccCC
Q 001763 778 GDVKRSAQVFDEMAE-RNYV------ISWNSMIVGFAKNGYAEDALKVFHEMKETQAMP-DD----VTFLGVLTACSHAG 845 (1017)
Q Consensus 778 g~~~~A~~~~~~~~~-~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~----~~~~~l~~~~~~~g 845 (1017)
-++.+++.+-+.-.. |+.. ...-+|..++.-.+.++++++.|+....-.-.. |. ..+++|...|....
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 777777777653332 2221 133457777777788999999999987732111 22 36888999999999
Q ss_pred cHHHHHHHHHHhhh---hcCCCcCchhHHH-----HHHhhhccCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHH
Q 001763 846 RVSEGRQIFETMVS---CHGIQPRVDHCAC-----MVDLLGRWGFLKEAEEFIEQL-------TFEPD-SRIWTTLLGAC 909 (1017)
Q Consensus 846 ~~~~a~~~~~~m~~---~~~~~p~~~~~~~-----l~~~l~~~g~~~eA~~~~~~~-------~~~p~-~~~~~~ll~~~ 909 (1017)
++++|..+..+..+ .+++..-...|.+ |..+|...|++-+|.+..++. ..+|- ......+.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 99998877666533 2454444444544 445677788887777776552 22221 22456678899
Q ss_pred HhcCCchHHHHHHHHHHhh
Q 001763 910 GVHRDDIRGRLAAKKLIEL 928 (1017)
Q Consensus 910 ~~~g~~~~a~~~~~~~l~~ 928 (1017)
+..||.|.|-.-|+++...
T Consensus 257 R~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HhcccHhHHHHHHHHHHHH
Confidence 9999999999999998765
No 233
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.42 E-value=0.15 Score=47.54 Aligned_cols=71 Identities=18% Similarity=0.307 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHcccCCcHHHHHHHHHHhhh----hcCCCcCchhH
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPD-DVTFLGVLTACSHAGRVSEGRQIFETMVS----CHGIQPRVDHC 870 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~~ 870 (1017)
....++..+...|++++|+.+.++++. ..|- ...+..++.+|...|+..+|++.|+++.. +.|+.|+.++-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 556778888899999999999999999 5674 47889999999999999999999998854 46788876543
No 234
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.42 E-value=0.025 Score=36.82 Aligned_cols=33 Identities=21% Similarity=0.159 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC
Q 001763 900 RIWTTLLGACGVHRDDIRGRLAAKKLIELEPEN 932 (1017)
Q Consensus 900 ~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~ 932 (1017)
.+|..++..+...|+++.|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 468888888889999999999999999999864
No 235
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.65 Score=46.90 Aligned_cols=53 Identities=13% Similarity=0.177 Sum_probs=30.8
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHh
Q 001763 803 IVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETM 857 (1017)
Q Consensus 803 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m 857 (1017)
.......|++.+|..+|...++. .|+. ..-..++.+|...|++++|..++..+
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 33445566666777777666663 3333 34455556666666666666666554
No 236
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.34 E-value=2.7 Score=41.89 Aligned_cols=174 Identities=16% Similarity=0.158 Sum_probs=96.5
Q ss_pred HhHHHhcCCHHHHHHHHHhccCCChh-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCCh--HhHHHHHHHcc
Q 001763 771 IDMYAKCGDVKRSAQVFDEMAERNYV-----ISWNSMIVGFAKNGYAEDALKVFHEMKET-QAMPDD--VTFLGVLTACS 842 (1017)
Q Consensus 771 ~~~y~~~g~~~~A~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~--~~~~~l~~~~~ 842 (1017)
+..-...|++++|.+.|+.+....+. .+--.++-++.+.+++++|+...++.+.. +-.||. +.|...+.-+.
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~ 120 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFF 120 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Confidence 33344567777777777777653222 12334556677778888888888877773 222332 22332222222
Q ss_pred cC----CcHH---HHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcC
Q 001763 843 HA----GRVS---EGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQLTFEPDSRIW--TTLLGACGVHR 913 (1017)
Q Consensus 843 ~~----g~~~---~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~~~~p~~~~~--~~ll~~~~~~g 913 (1017)
.. .+.. +|..-|+.++.+| |+.+ -..+|..-+..+. |.... .+.+.-|.+.|
T Consensus 121 ~i~~~~rDq~~~~~A~~~f~~~i~ry---PnS~-------------Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~ 181 (254)
T COG4105 121 QIDDVTRDQSAARAAFAAFKELVQRY---PNSR-------------YAPDAKARIVKLN---DALAGHEMAIARYYLKRG 181 (254)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHC---CCCc-------------chhhHHHHHHHHH---HHHHHHHHHHHHHHHHhc
Confidence 11 1222 3333333333322 2211 1112221111110 00111 12345577889
Q ss_pred CchHHHHHHHHHHhhCCCCC---chHHHHHHHHHhcCCcHHHHHHHHHHHHcC
Q 001763 914 DDIRGRLAAKKLIELEPENP---SPYVQLSNIYAALGNWNEVNTLRREMREKG 963 (1017)
Q Consensus 914 ~~~~a~~~~~~~l~~~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 963 (1017)
.+..|..-++.+++.-|+-+ .++..+-.+|...|-.++|.+..+.+...-
T Consensus 182 ~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~ 234 (254)
T COG4105 182 AYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANY 234 (254)
T ss_pred ChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcC
Confidence 99999999999999877554 456677788999999999999988877653
No 237
>PRK15331 chaperone protein SicA; Provisional
Probab=95.31 E-value=0.19 Score=46.25 Aligned_cols=87 Identities=11% Similarity=0.091 Sum_probs=63.9
Q ss_pred cccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHH
Q 001763 704 HAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRS 783 (1017)
Q Consensus 704 ~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A 783 (1017)
+.+.|++++|..+|+-+...+ .-+..-|..|..+|-..+++++|...+......+.. |+......+..|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 455667777777776665532 123334566667777788899999888888777664 777788889999999999999
Q ss_pred HHHHHhccC
Q 001763 784 AQVFDEMAE 792 (1017)
Q Consensus 784 ~~~~~~~~~ 792 (1017)
+..|.....
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 999887765
No 238
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.28 E-value=0.041 Score=35.78 Aligned_cols=33 Identities=24% Similarity=0.190 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC
Q 001763 900 RIWTTLLGACGVHRDDIRGRLAAKKLIELEPEN 932 (1017)
Q Consensus 900 ~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~ 932 (1017)
..|..++..+...|++++|+..++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 367778888888899999999999999998875
No 239
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.21 E-value=1.9 Score=48.29 Aligned_cols=30 Identities=13% Similarity=-0.055 Sum_probs=17.9
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHhhCC
Q 001763 660 DDDFLHIALLSMYMNSKRNTDARLLFTEFP 689 (1017)
Q Consensus 660 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 689 (1017)
|.+..+..|++.-...-.++.|+..|-+..
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~ 719 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCG 719 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhc
Confidence 566666666666666556666665554443
No 240
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=1.5 Score=44.43 Aligned_cols=119 Identities=9% Similarity=0.125 Sum_probs=81.6
Q ss_pred HHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCChhHHHHH---HHHHHHhCCCHH
Q 001763 737 RACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNS---MIVGFAKNGYAE 813 (1017)
Q Consensus 737 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~ 813 (1017)
......|+..++...+..+....++ +..+...|+..|...|+.+.|..++..++.......|.. -+..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3456788999999999999888776 577888899999999999999999999887433322322 233333333333
Q ss_pred HHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhh
Q 001763 814 DALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVS 859 (1017)
Q Consensus 814 ~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 859 (1017)
+...+-.+.-. .||. ..-..+...+...|+.++|.+.+-.+.+
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333333333 5744 4556677778888888888877766655
No 241
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.19 E-value=8.4 Score=44.83 Aligned_cols=176 Identities=12% Similarity=0.055 Sum_probs=111.4
Q ss_pred HHHHHHHhcCCchhHHHHhcccCCCCchhHH---HHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHhhcCCC
Q 001763 95 AIVDLYAKCGIANLAEKVFDRLEDRDILAWN---SILSMYSKRGSFENVFKSFGLLCNRGGVPNGFTFAIVLSACSKSMD 171 (1017)
Q Consensus 95 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~---~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 171 (1017)
.-|+++.+-.-++.|..+-..-..+....-+ ....-+.+.|++++|...|-+-... +.| +.+++-+-....
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~ 412 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQR 412 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHH
Confidence 4466666666777777766554332222111 2234456789999998887665432 122 234455555556
Q ss_pred hhHHHHHHHHHHHhcCCCCcchHHHHHHHHHcCCCchhHHHhhhcCCCCCcc-hHHHHHHHHHHcCChhHHHHHHHHHHH
Q 001763 172 VSYGRQLHCHVIELGFESSSFCKGALIDMYAKLNNVSDARRVFDGAVDLDTV-SWTSMIAGYVQAGLPEAAFELFEKMIK 250 (1017)
Q Consensus 172 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 250 (1017)
...-...++.+.+.|+. +...-+.|+..|.|.++.+.-.+..+....-... -....+..+.+.+-.++|..+-.+...
T Consensus 413 IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~ 491 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK 491 (933)
T ss_pred HHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc
Confidence 66666777788888865 3445577999999999999998888776522111 255677777777777777766555432
Q ss_pred cCCCCChhhHHHHHHHHhccCCHHHHHHHHHhcCC
Q 001763 251 VGCVPDQVAFVTVINVCFNLGRLDEARELFAQMQN 285 (1017)
Q Consensus 251 ~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 285 (1017)
.... +--.+-..+++++|++.+..++-
T Consensus 492 -----he~v---l~ille~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 492 -----HEWV---LDILLEDLHNYEEALRYISSLPI 518 (933)
T ss_pred -----CHHH---HHHHHHHhcCHHHHHHHHhcCCH
Confidence 2222 22234456889999999998874
No 242
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.12 E-value=0.25 Score=53.42 Aligned_cols=189 Identities=15% Similarity=0.125 Sum_probs=109.8
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHH
Q 001763 808 KNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAE 887 (1017)
Q Consensus 808 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~ 887 (1017)
+..+.++-+++-++.++ +.||-.+...++ +-..+.-..|+.++|++..+. | ...+..- ......|..-
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~lg~s-~~~~~~g~~~--- 247 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASLGKS-QFLQHHGHFW--- 247 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhhchh-hhhhcccchh---
Confidence 34556677777788888 678875433333 345567789999999998761 1 0000000 0000111111
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCC--CCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCCc
Q 001763 888 EFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPE--NPSPYVQLSNIYAALGNWNEVNTLRREMREKGVK 965 (1017)
Q Consensus 888 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~--~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 965 (1017)
+.+.+-..+|-..+=..|.-.+++.|..++|++.++.+++..|. +-.++.+|...|...+++.|+..+..+-.+....
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP 327 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence 11111111222223344556678889999999999999988874 5678999999999999999999998877554333
Q ss_pred cCCceeEE----EECCEEEEEecCCCCCCC-------hHHHHHHHHHHHHHHHhcCccCC
Q 001763 966 KFPGCSWI----VLGQNTNFFVAGDTSHPN-------ADRICAVLEDLTASMEKESYFPE 1014 (1017)
Q Consensus 966 ~~~g~s~i----~~~~~~~~f~~~d~~~~~-------~~~~~~~l~~l~~~~~~~~~~~~ 1014 (1017)
|-...+|- ... .++|+--|+ +......++-+.+-++..-+||+
T Consensus 328 kSAti~YTaALLkaR------av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 328 KSATICYTAALLKAR------AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred chHHHHHHHHHHHHH------hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 32221111 111 123333332 22334467778888887778774
No 243
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.95 E-value=0.18 Score=43.48 Aligned_cols=89 Identities=17% Similarity=0.180 Sum_probs=64.7
Q ss_pred HhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCCh--HhHHHHHHHcccCC
Q 001763 771 IDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKET-QAMPDD--VTFLGVLTACSHAG 845 (1017)
Q Consensus 771 ~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~--~~~~~l~~~~~~~g 845 (1017)
+-+++..|+++.|++.|.+... |.....||.-..++.-+|+.++|++-+++.++. |-+... ..|+.-...|...|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3456778888888888887665 333348888888888889999999888888874 222111 34566666688888
Q ss_pred cHHHHHHHHHHhhh
Q 001763 846 RVSEGRQIFETMVS 859 (1017)
Q Consensus 846 ~~~~a~~~~~~m~~ 859 (1017)
+.+.|..-|+...+
T Consensus 130 ~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 130 NDDAARADFEAAAQ 143 (175)
T ss_pred chHHHHHhHHHHHH
Confidence 88888888888765
No 244
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.94 E-value=9.8 Score=44.31 Aligned_cols=116 Identities=11% Similarity=0.069 Sum_probs=69.7
Q ss_pred HHHHHHccCChhHHHHHHhhcCCCCcc---hHHHHHHHHHhCCChhHHHHHHHhhhhcCCCCChhcHHHHHHhhhcccch
Q 001763 364 LINMYAKCEKMESAKKVFDSLDERNAV---LWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLEYL 440 (1017)
Q Consensus 364 li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 440 (1017)
-+++.++...++.|..+-+.-...... ....-.+-+.+.|++++|...|-+-... +.|. .++.-+-.....
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~I 413 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRI 413 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHH
Confidence 455556666666666665543322111 1222334456788899988887765432 2232 234444444455
Q ss_pred HhhHHHHHHHHHhcCCchhhHHHHHHHHhhccCChhHHHHHHhhcC
Q 001763 441 EMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQ 486 (1017)
Q Consensus 441 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 486 (1017)
..-...++.+.+.|+. +...-+.|+.+|.+.++.+.-.++.+...
T Consensus 414 knLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 414 KNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 5555667777777764 33445778899999999988888777655
No 245
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.89 E-value=0.71 Score=47.49 Aligned_cols=217 Identities=9% Similarity=0.004 Sum_probs=139.5
Q ss_pred ccCcHHHHHHHHHHHHHh--CCCCCcchHhHHHhHHHhcCCHHHHHHHHH----hccC-CChh---HHHHHHHHHHHhCC
Q 001763 741 VLSSLRDGGEIHSLIFHT--GYDLDEITGSALIDMYAKCGDVKRSAQVFD----EMAE-RNYV---ISWNSMIVGFAKNG 810 (1017)
Q Consensus 741 ~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~----~~~~-~~~~---~~~~~l~~~~~~~g 810 (1017)
+..+.+++...+...+.. +......++..+.++.++.|.++++...-- ...+ .+.. .+|..+..++.+.-
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677666655422 111234567788899999999888765532 1122 1111 35667777777777
Q ss_pred CHHHHHHHHHHHHHC-CCCCCh---HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCC--Cc--CchhHHHHHHhhhccCC
Q 001763 811 YAEDALKVFHEMKET-QAMPDD---VTFLGVLTACSHAGRVSEGRQIFETMVSCHGI--QP--RVDHCACMVDLLGRWGF 882 (1017)
Q Consensus 811 ~~~~A~~~~~~m~~~-g~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~--~p--~~~~~~~l~~~l~~~g~ 882 (1017)
++.+++..-+.-+.. |..|-. .....+.+++...+.++++++.|+...+--.. .| ....|..+..+|.+..+
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 777777776665552 333311 23455777778888899999999998762111 22 24468888999999999
Q ss_pred HHHHHHHHHh-------CCCCCCHHHH-----HHHHHHHHhcCCchHHHHHHHHHHhhC--CCC----CchHHHHHHHHH
Q 001763 883 LKEAEEFIEQ-------LTFEPDSRIW-----TTLLGACGVHRDDIRGRLAAKKLIELE--PEN----PSPYVQLSNIYA 944 (1017)
Q Consensus 883 ~~eA~~~~~~-------~~~~p~~~~~-----~~ll~~~~~~g~~~~a~~~~~~~l~~~--p~~----~~~~~~l~~~y~ 944 (1017)
+++|.-+..+ ..+..-..-| ..+.-+++..|..-.|.+..+.+.++. ..| +-....+++||.
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 9988866543 3322222222 334567889999988888888887663 223 334567899999
Q ss_pred hcCCcHHHHHHHH
Q 001763 945 ALGNWNEVNTLRR 957 (1017)
Q Consensus 945 ~~g~~~~a~~~~~ 957 (1017)
..|+.+.|-.-++
T Consensus 258 ~~gd~e~af~rYe 270 (518)
T KOG1941|consen 258 SRGDLERAFRRYE 270 (518)
T ss_pred hcccHhHHHHHHH
Confidence 9999888754443
No 246
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.72 E-value=10 Score=43.53 Aligned_cols=123 Identities=12% Similarity=0.027 Sum_probs=63.0
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHcCCCchh---HHHhhhcCCC--CCcchHHHHHHHHHHc
Q 001763 161 IVLSACSKSMDVSYGRQLHCHVIELGFESSSFCKGALIDMYAKLNNVSD---ARRVFDGAVD--LDTVSWTSMIAGYVQA 235 (1017)
Q Consensus 161 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~---A~~~f~~~~~--~~~~~~~~li~~~~~~ 235 (1017)
.+|.-+...+.+..|.++-..+-..-.+. .+++.....-+.+..+..+ +.++-++... ...++|..+..--...
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQE 520 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhc
Confidence 34555566667777777665543321112 5666666666666533322 2222223333 4566777777777778
Q ss_pred CChhHHHHHHHHHHHcC----CCCChhhHHHHHHHHhccCCHHHHHHHHHhcC
Q 001763 236 GLPEAAFELFEKMIKVG----CVPDQVAFVTVINVCFNLGRLDEARELFAQMQ 284 (1017)
Q Consensus 236 g~~~~A~~~~~~m~~~g----~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 284 (1017)
|+++-|..+++.=...+ +-.+..-+..-+.-+.+.|+.+....++-.+.
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 88888877765311111 00111223333444455555555555554443
No 247
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.65 E-value=0.27 Score=49.23 Aligned_cols=90 Identities=20% Similarity=0.241 Sum_probs=68.9
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCh----HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCc-hhHHHHHHh
Q 001763 802 MIVGFAKNGYAEDALKVFHEMKETQAMPDD----VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRV-DHCACMVDL 876 (1017)
Q Consensus 802 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~ 876 (1017)
..-.+.+.|++.+|...|...++.. |+. ..+.-|+.++...|++++|..+|..+.++|+-.|.. +.+-.++..
T Consensus 147 ~A~~~~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~ 224 (262)
T COG1729 147 AALDLYKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVS 224 (262)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Confidence 3344556788999999999998853 433 245558888999999999999999999888777754 777777788
Q ss_pred hhccCCHHHHHHHHHhC
Q 001763 877 LGRWGFLKEAEEFIEQL 893 (1017)
Q Consensus 877 l~~~g~~~eA~~~~~~~ 893 (1017)
+.+.|+.++|...++++
T Consensus 225 ~~~l~~~d~A~atl~qv 241 (262)
T COG1729 225 LGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHhcCHHHHHHHHHHH
Confidence 88888888888777765
No 248
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.63 E-value=0.2 Score=50.14 Aligned_cols=84 Identities=17% Similarity=0.189 Sum_probs=60.4
Q ss_pred ccCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC---CchHHHHHHHHHhcCCcH
Q 001763 879 RWGFLKEAEEFIEQL-TFEP----DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPEN---PSPYVQLSNIYAALGNWN 950 (1017)
Q Consensus 879 ~~g~~~eA~~~~~~~-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~---~~~~~~l~~~y~~~g~~~ 950 (1017)
..|++.+|+..|... ..-| .+..+..|+..+..+|+++.|...|..+.+-.|+. |++++-|+.+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 455566666555432 1111 12245557888888999999999999998887754 577999999999999999
Q ss_pred HHHHHHHHHHHc
Q 001763 951 EVNTLRREMREK 962 (1017)
Q Consensus 951 ~a~~~~~~m~~~ 962 (1017)
+|..+++++.++
T Consensus 233 ~A~atl~qv~k~ 244 (262)
T COG1729 233 EACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHH
Confidence 999988877654
No 249
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.56 E-value=0.29 Score=43.92 Aligned_cols=72 Identities=11% Similarity=0.153 Sum_probs=44.6
Q ss_pred HhHHHhHHHhcCCHHHHHHHHHhccCCChh-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh--HhHHHHHH
Q 001763 767 GSALIDMYAKCGDVKRSAQVFDEMAERNYV-----ISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD--VTFLGVLT 839 (1017)
Q Consensus 767 ~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~ 839 (1017)
+..-+....+.|++++|++.|+.+..+-+. .+--.++.+|.+.|++++|+..+++.++ +.|++ +-|.....
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir--LhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR--LHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCCCccHHHHHH
Confidence 333444455667777777777777653221 2345677778888888888888888887 45544 34444444
Q ss_pred H
Q 001763 840 A 840 (1017)
Q Consensus 840 ~ 840 (1017)
+
T Consensus 91 g 91 (142)
T PF13512_consen 91 G 91 (142)
T ss_pred H
Confidence 3
No 250
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.42 E-value=0.47 Score=48.22 Aligned_cols=150 Identities=9% Similarity=0.042 Sum_probs=102.7
Q ss_pred cCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchH----hHHHhHHHhcCCHH
Q 001763 706 QNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITG----SALIDMYAKCGDVK 781 (1017)
Q Consensus 706 ~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~y~~~g~~~ 781 (1017)
..|+..+|-..++++++. ++.|..++...=.+|.-.|+.+.-+..+++++.. ..+|...| ..+.-.+..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 357777787788888775 4667777777778888888888888888887754 11233333 34455566889999
Q ss_pred HHHHHHHhccCCChhHHHH--HHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----hHhHHHHHHHcccCCcHHHHHHHHH
Q 001763 782 RSAQVFDEMAERNYVISWN--SMIVGFAKNGYAEDALKVFHEMKETQAMPD----DVTFLGVLTACSHAGRVSEGRQIFE 855 (1017)
Q Consensus 782 ~A~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~ 855 (1017)
+|++.-++..+-|...+|. +....+...|+..++.+...+-... .+-. ...|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999888755554664 6777788889999998876654331 2211 1123334445667789999999998
Q ss_pred Hhh
Q 001763 856 TMV 858 (1017)
Q Consensus 856 ~m~ 858 (1017)
.-+
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 643
No 251
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.18 E-value=6.8 Score=47.44 Aligned_cols=169 Identities=15% Similarity=0.121 Sum_probs=75.0
Q ss_pred hhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCC
Q 001763 700 VISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGD 779 (1017)
Q Consensus 700 li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~ 779 (1017)
++-+-..+.++.|-+-+++++... .++..-|. |+ ...++++.|..-+..+ | ...+.-..+.--+.|-
T Consensus 857 l~VAq~SqkDPkEyLP~L~el~~m--~~~~rkF~--ID--~~L~ry~~AL~hLs~~---~----~~~~~e~~n~I~kh~L 923 (1265)
T KOG1920|consen 857 LLVAQKSQKDPKEYLPFLNELKKM--ETLLRKFK--ID--DYLKRYEDALSHLSEC---G----ETYFPECKNYIKKHGL 923 (1265)
T ss_pred HHHHHHhccChHHHHHHHHHHhhc--hhhhhhee--HH--HHHHHHHHHHHHHHHc---C----ccccHHHHHHHHhccc
Confidence 445555667788888777777632 22211110 00 1123333333322221 1 1222333333344445
Q ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhh
Q 001763 780 VKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVS 859 (1017)
Q Consensus 780 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 859 (1017)
+.+|..++..-.++-.. .|...+.-+...+.+++|.-+|+..-+. ---+.+|..+|+|.+|..+-.++..
T Consensus 924 y~~aL~ly~~~~e~~k~-i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~ 993 (1265)
T KOG1920|consen 924 YDEALALYKPDSEKQKV-IYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSE 993 (1265)
T ss_pred chhhhheeccCHHHHHH-HHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcC
Confidence 55555444332222222 3444444444555555555555443220 1124455566666666665555432
Q ss_pred hcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC
Q 001763 860 CHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL 893 (1017)
Q Consensus 860 ~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~ 893 (1017)
+-.--..+-..|+.-+..+++.-||-++....
T Consensus 994 --~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 994 --GKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred --CHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 11111122345555566666666666555544
No 252
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.16 E-value=6 Score=46.07 Aligned_cols=246 Identities=12% Similarity=0.108 Sum_probs=135.3
Q ss_pred cCCCchHHHHHHHHHHH-------CCCCcCHHhHHHHHHHHhccC-----cHHHHHHHHHHHHHhCCCCCcchHhHHHhH
Q 001763 706 QNDSNYEALHFYREMRS-------HNVLPDQATFVSVLRACAVLS-----SLRDGGEIHSLIFHTGYDLDEITGSALIDM 773 (1017)
Q Consensus 706 ~~g~~~~A~~~~~~m~~-------~~~~pd~~t~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 773 (1017)
...+.+.|+.+|+.+.+ .|.. .....+..+|.+.. +.+.|..++....+.|. +.....|+.+
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~~~---~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~---~~a~~~lg~~ 334 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKGLP---PAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN---PDAQYLLGVL 334 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhcCC---ccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC---chHHHHHHHH
Confidence 34455566666655544 3311 22333444444322 45556666666666553 2344444444
Q ss_pred HHhcC---CHHHHHHHHHhccCCChhHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCCc
Q 001763 774 YAKCG---DVKRSAQVFDEMAERNYVISWNSMIVGFAK----NGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGR 846 (1017)
Q Consensus 774 y~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 846 (1017)
|..-. +...|.+.|......+.+.+...+..+|.. ..+.+.|..++++.-+.| .|-...-...+..+.. +.
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~ 412 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GR 412 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-cc
Confidence 44333 456777777777766655454444444432 236677788888777766 4443333344444444 67
Q ss_pred HHHHHHHHHHhhhhcCCCcCchhHHHHH-----Hhhhc--cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCc
Q 001763 847 VSEGRQIFETMVSCHGIQPRVDHCACMV-----DLLGR--WGFLKEAEEFIEQLTFEPDSRIWTTLLGACGV----HRDD 915 (1017)
Q Consensus 847 ~~~a~~~~~~m~~~~~~~p~~~~~~~l~-----~~l~~--~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~ 915 (1017)
++.+.-.+..+.+ .|.+-....-..+. ++..+ ..+.+.+..++.+....-+......|...+.. ..+.
T Consensus 413 ~~~~~~~~~~~a~-~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~ 491 (552)
T KOG1550|consen 413 YDTALALYLYLAE-LGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDP 491 (552)
T ss_pred ccHHHHHHHHHHH-hhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCCh
Confidence 7766666666655 33322111111111 11111 23556666666666555555556656555432 2367
Q ss_pred hHHHHHHHHHHhhCCCCCchHHHHHHHHHhc-C--CcHHHHHHHHHHHHcC
Q 001763 916 IRGRLAAKKLIELEPENPSPYVQLSNIYAAL-G--NWNEVNTLRREMREKG 963 (1017)
Q Consensus 916 ~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~-g--~~~~a~~~~~~m~~~~ 963 (1017)
+.|...+.++-+.. +....+|+++|..- | ++..|.+.+.+..+.+
T Consensus 492 ~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 492 EKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred HHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 88888888887776 78888888888743 1 2677888877776643
No 253
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.07 E-value=1.4 Score=41.66 Aligned_cols=115 Identities=10% Similarity=0.055 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHCCCCCCh-Hh--HHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHH-----HHhhhccCCHHH
Q 001763 814 DALKVFHEMKETQAMPDD-VT--FLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACM-----VDLLGRWGFLKE 885 (1017)
Q Consensus 814 ~A~~~~~~m~~~g~~p~~-~~--~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l-----~~~l~~~g~~~e 885 (1017)
+.....+++...+-. +. .+ -..+...+..+|++++|...++..+. .|..+.+..+ ..++...|++|+
T Consensus 70 ~~~~~~ekf~~~n~~-t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~ 144 (207)
T COG2976 70 KSIAAAEKFVQANGK-TIYAVLAALELAKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADA 144 (207)
T ss_pred hhHHHHHHHHhhccc-cHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHH
Confidence 555556666663211 22 22 24456678889999999999888765 3444555444 456788999999
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCC
Q 001763 886 AEEFIEQLTFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENP 933 (1017)
Q Consensus 886 A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~ 933 (1017)
|++.++...-+. .+..-..-+.++...||-+.|+..|+++++.+++++
T Consensus 145 AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 145 ALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 999998754221 222233345778899999999999999999986443
No 254
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.91 E-value=3.9 Score=40.76 Aligned_cols=70 Identities=9% Similarity=0.003 Sum_probs=37.9
Q ss_pred cccCCCchHHHHHHHHHHHCCC-Cc-CHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhH
Q 001763 704 HAQNDSNYEALHFYREMRSHNV-LP-DQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDM 773 (1017)
Q Consensus 704 ~~~~g~~~~A~~~~~~m~~~~~-~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 773 (1017)
-.+.|++++|.+.|+.+..... .| ...+...++-+..+.+++++|....++.++..+.....-|..-+.+
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg 115 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG 115 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence 4455666666666666654321 11 2344555556666666777777666666666554333333333333
No 255
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.86 E-value=1.8 Score=39.74 Aligned_cols=66 Identities=17% Similarity=0.199 Sum_probs=39.6
Q ss_pred HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhcc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001763 832 VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRW-GFLKEAEEFIEQLTFEPDSRIWTTLLGACG 910 (1017)
Q Consensus 832 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~-g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~ 910 (1017)
......+..|.+.+.++++..++.++.. +...++.+... ++.+.|.+++.+. .++..|..++..|.
T Consensus 70 yd~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~l 136 (140)
T smart00299 70 YDIEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKALL 136 (140)
T ss_pred CCHHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 3344456667777777777777666532 22233333333 7778888887762 35667887776664
No 256
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.84 E-value=1.7 Score=49.19 Aligned_cols=158 Identities=11% Similarity=0.079 Sum_probs=97.0
Q ss_pred hhhhcccCCCchHHHHHHHHHHHCC-CCcCH-----HhHHHHHHH-Hhc---cCcHHHHHHHHHHHHHhCCCCCcchHhH
Q 001763 700 VISGHAQNDSNYEALHFYREMRSHN-VLPDQ-----ATFVSVLRA-CAV---LSSLRDGGEIHSLIFHTGYDLDEITGSA 769 (1017)
Q Consensus 700 li~~~~~~g~~~~A~~~~~~m~~~~-~~pd~-----~t~~~ll~~-~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 769 (1017)
++....-.|+-+.+++++.+..+.+ +.-.. .+|..++.. +.. ..+.+.+.+++..+.+.-|+ ......-
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~-s~lfl~~ 272 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPN-SALFLFF 272 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCC-cHHHHHH
Confidence 3344444566677777666654422 11111 122233332 222 45778888888888877664 4444445
Q ss_pred HHhHHHhcCCHHHHHHHHHhccCCCh-----h-HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH-cc
Q 001763 770 LIDMYAKCGDVKRSAQVFDEMAERNY-----V-ISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTA-CS 842 (1017)
Q Consensus 770 l~~~y~~~g~~~~A~~~~~~~~~~~~-----~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-~~ 842 (1017)
-+.++...|++++|++.|++...... . ..+..++-.+....++++|.+.|.++.+.+-- ....|..+..+ +.
T Consensus 273 ~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~ 351 (468)
T PF10300_consen 273 EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAACLL 351 (468)
T ss_pred HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHH
Confidence 56778888999999999997553111 1 24556677788889999999999999885311 23444444443 35
Q ss_pred cCCcH-------HHHHHHHHHhhh
Q 001763 843 HAGRV-------SEGRQIFETMVS 859 (1017)
Q Consensus 843 ~~g~~-------~~a~~~~~~m~~ 859 (1017)
..|+. ++|.++|.++-.
T Consensus 352 ~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 352 MLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred hhccchhhhhhHHHHHHHHHHHHH
Confidence 67777 778888777644
No 257
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.83 E-value=16 Score=42.15 Aligned_cols=98 Identities=20% Similarity=0.231 Sum_probs=46.3
Q ss_pred HhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHH
Q 001763 775 AKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIF 854 (1017)
Q Consensus 775 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 854 (1017)
..-|+..+|.++-.+.+-++-. .|---+.+++..+++++-+++-+.+.. .+-|.....+|.+.|+.+||.+++
T Consensus 695 i~~g~~k~a~ql~~~FkipdKr-~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYi 767 (829)
T KOG2280|consen 695 ILIGQNKRAEQLKSDFKIPDKR-LWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYI 767 (829)
T ss_pred HHccchHHHHHHHHhcCCcchh-hHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhh
Confidence 3345555555555555555544 444444555555555544444333211 233444445555555555555554
Q ss_pred HHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHH
Q 001763 855 ETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEF 889 (1017)
Q Consensus 855 ~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~ 889 (1017)
-++.. +.-.+++|.+.|.+.||.++
T Consensus 768 prv~~----------l~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 768 PRVGG----------LQEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred hccCC----------hHHHHHHHHHhccHHHHHHH
Confidence 44321 11344555555555555544
No 258
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.77 E-value=0.12 Score=48.29 Aligned_cols=89 Identities=12% Similarity=0.087 Sum_probs=45.3
Q ss_pred cccCCcHHHHHHHHHHhhhhcCCCcC---chhHHHHHHhhhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchH
Q 001763 841 CSHAGRVSEGRQIFETMVSCHGIQPR---VDHCACMVDLLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIR 917 (1017)
Q Consensus 841 ~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l~~~l~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 917 (1017)
+...|++++|..-|...++...-.|. ...|.+-..++.+.+++ +.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~--------------------------------e~ 152 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKW--------------------------------ES 152 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhH--------------------------------HH
Confidence 55678888888888877762211111 11233334444444444 44
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 001763 918 GRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMRE 961 (1017)
Q Consensus 918 a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 961 (1017)
|+...-++|+++|.+-.++..-+.+|.+..++++|++-++++.+
T Consensus 153 aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 153 AIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILE 196 (271)
T ss_pred HHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44444455555554444444444555555555555554444444
No 259
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.60 E-value=8 Score=38.01 Aligned_cols=204 Identities=11% Similarity=0.078 Sum_probs=96.8
Q ss_pred CCcCHH----hHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC-CChhHHH
Q 001763 725 VLPDQA----TFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE-RNYVISW 799 (1017)
Q Consensus 725 ~~pd~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~-~~~~~~~ 799 (1017)
++||.. .|.....++...+++++|...+.+..+..-. +.. +. -....++.|.-+.+++.+ +..+..+
T Consensus 23 wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEn-nrs-lf------hAAKayEqaamLake~~klsEvvdl~ 94 (308)
T KOG1585|consen 23 WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYEN-NRS-LF------HAAKAYEQAAMLAKELSKLSEVVDLY 94 (308)
T ss_pred cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh-ccc-HH------HHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 456643 2444455677777888888776665532111 111 11 112233444444444444 2222344
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH--CCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcC----CCcCchhHHHH
Q 001763 800 NSMIVGFAKNGYAEDALKVFHEMKE--TQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHG----IQPRVDHCACM 873 (1017)
Q Consensus 800 ~~l~~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~----~~p~~~~~~~l 873 (1017)
+--...|..+|..+-|-..+++.-+ .+++||. |+++|++...... ..-..+.|+..
T Consensus 95 eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~------------------AlqlYqralavve~~dr~~ma~el~gk~ 156 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEKAAKALENVKPDD------------------ALQLYQRALAVVEEDDRDQMAFELYGKC 156 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHH------------------HHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 5556667777776665555554332 1244443 3333333322111 11113334555
Q ss_pred HHhhhccCCHHHHHHHHHhCC-----CCCCHHHHHHHH---HHHHhcCCchHHHHHHHHHHhh----CCCCCchHHHHHH
Q 001763 874 VDLLGRWGFLKEAEEFIEQLT-----FEPDSRIWTTLL---GACGVHRDDIRGRLAAKKLIEL----EPENPSPYVQLSN 941 (1017)
Q Consensus 874 ~~~l~~~g~~~eA~~~~~~~~-----~~p~~~~~~~ll---~~~~~~g~~~~a~~~~~~~l~~----~p~~~~~~~~l~~ 941 (1017)
..+|.|..+++||-..+.+-. +..-+..+...+ -.+.-..|+..|+..++.--++ .|++..+.-+|..
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ 236 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT 236 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence 567777777777776665532 111111222222 2222335666777766665443 3445555555554
Q ss_pred HHHhcCCcHHHHHH
Q 001763 942 IYAALGNWNEVNTL 955 (1017)
Q Consensus 942 ~y~~~g~~~~a~~~ 955 (1017)
.| ..|+-+++.++
T Consensus 237 ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 237 AY-DEGDIEEIKKV 249 (308)
T ss_pred Hh-ccCCHHHHHHH
Confidence 44 34555555444
No 260
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.34 E-value=13 Score=39.85 Aligned_cols=111 Identities=15% Similarity=0.157 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHcC-CCCChHHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhh
Q 001763 609 DAVVLYRGMQTEG-LSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTE 687 (1017)
Q Consensus 609 ~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 687 (1017)
.|..+|-+..+.| +.++...+.+.+.-++ .|+...|-.+++.-+..- |+++.........+.+-++-+.|+.+|+.
T Consensus 415 aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~kyl~fLi~inde~naraLFet 491 (660)
T COG5107 415 AARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKYLLFLIRINDEENARALFET 491 (660)
T ss_pred HHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 4444444444444 3334444444443322 244444444544433332 24444445556666777777777777774
Q ss_pred CCC--CCC--ceeehhhhhhcccCCCchHHHHHHHHHHH
Q 001763 688 FPN--PKS--TVLWTAVISGHAQNDSNYEALHFYREMRS 722 (1017)
Q Consensus 688 ~~~--~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 722 (1017)
... ..+ -..|..||..-..-|+...+..+=++|.+
T Consensus 492 sv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 492 SVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred hHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 332 011 12344444444444555444444444443
No 261
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.30 E-value=2.2 Score=37.30 Aligned_cols=138 Identities=17% Similarity=0.207 Sum_probs=74.1
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCChHhH--HHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHH
Q 001763 807 AKNGYAEDALKVFHEMKETQAMPDDVTF--LGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLK 884 (1017)
Q Consensus 807 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~ 884 (1017)
...|..++..++..+.....- -+...| -.++. +-+-+-..+.++++-+-|.+.|- ...-.++..|.+.|...
T Consensus 13 ildG~V~qGveii~k~v~Ssn-i~E~NWvICNiiD----aa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~~s 86 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSSN-IKEYNWVICNIID----AADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNKLS 86 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS--HHHHTHHHHHHHH----H--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT---
T ss_pred HHhchHHHHHHHHHHHcCcCC-ccccceeeeecch----hhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcchH
Confidence 345777888888888776321 011222 11222 12223334444444332222221 12233455555555554
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCC
Q 001763 885 EAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGV 964 (1017)
Q Consensus 885 eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 964 (1017)
|-. ..-++....+|.-+.-...+..+++.+..+|...+.+++.|.+.|+..++.+++++.=++|+
T Consensus 87 e~v---------------D~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYV---------------DLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHH---------------HHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHH---------------HHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 422 22345566778888888888888876667899999999999999999999999999988887
Q ss_pred c
Q 001763 965 K 965 (1017)
Q Consensus 965 ~ 965 (1017)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 5
No 262
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.28 E-value=0.63 Score=41.42 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=40.4
Q ss_pred cCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcC
Q 001763 861 HGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL----TFEPDSRIWTTLLGACGVHR 913 (1017)
Q Consensus 861 ~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~----~~~p~~~~~~~ll~~~~~~g 913 (1017)
..+.|+......++.+|+..|++..|+++++.. +++-+...|..|+..+...-
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 345677888888999999999999999887654 45556779999997665443
No 263
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.27 E-value=6.3 Score=36.43 Aligned_cols=119 Identities=15% Similarity=0.113 Sum_probs=82.7
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhH---HHH--HHhhhc
Q 001763 806 FAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHC---ACM--VDLLGR 879 (1017)
Q Consensus 806 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~---~~l--~~~l~~ 879 (1017)
+++.|..++|+..|.++.+.|...-. ...........+.|+..+|...|..+-.+ .|-+... .-+ ..+|..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHHhc
Confidence 46778888999999998887654222 22233444567889999999999988763 3333322 222 346788
Q ss_pred cCCHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 001763 880 WGFLKEAEEFIEQLTFEPDS---RIWTTLLGACGVHRDDIRGRLAAKKLIE 927 (1017)
Q Consensus 880 ~g~~~eA~~~~~~~~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~l~ 927 (1017)
.|-+++....++.+..+.++ ..-.+|+-+-++.|++..|...|+++..
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 99999999888877543332 2445677677789999999999998876
No 264
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.26 E-value=1.3 Score=50.15 Aligned_cols=94 Identities=17% Similarity=0.146 Sum_probs=56.2
Q ss_pred HHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCChHhH-HHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchh--H
Q 001763 798 SWNSMIVGFAK----NGYAEDALKVFHEMKETQAMPDDVTF-LGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDH--C 870 (1017)
Q Consensus 798 ~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~--~ 870 (1017)
.|+.++..+.- ....+.|.++++++.+ .-|+..-| ..-...+...|++++|++.|+.+.....--|...| +
T Consensus 231 ~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~ 308 (468)
T PF10300_consen 231 WYHLVVPSFLGIDGEDVPLEEAEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCY 308 (468)
T ss_pred HHHHHHHHHcCCcccCCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHH
Confidence 45555544433 3567788899999888 46877544 34455677889999999999876541111122222 2
Q ss_pred HHHHHhhhccCCHHHHHHHHHhC
Q 001763 871 ACMVDLLGRWGFLKEAEEFIEQL 893 (1017)
Q Consensus 871 ~~l~~~l~~~g~~~eA~~~~~~~ 893 (1017)
--+...+.-.+++++|.+.+..+
T Consensus 309 ~El~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 309 FELAWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred HHHHHHHHHHchHHHHHHHHHHH
Confidence 23344455566666666666554
No 265
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.26 E-value=0.19 Score=50.89 Aligned_cols=99 Identities=15% Similarity=0.192 Sum_probs=61.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCC-ChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhc
Q 001763 801 SMIVGFAKNGYAEDALKVFHEMKETQAMP-DDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGR 879 (1017)
Q Consensus 801 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~ 879 (1017)
.-++-|.++|++++|+..|...+. +.| |.+++..-..+|.+...+..|..-.+..+.. -...+.+|.|
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~~Y~KAYSR 170 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DKLYVKAYSR 170 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hHHHHHHHHH
Confidence 346667777777777777777666 456 5577777777777777666666555544330 0111223333
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCch
Q 001763 880 WGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSP 935 (1017)
Q Consensus 880 ~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~ 935 (1017)
-+.+-...|+.++|.+-++.+++++|++.+.
T Consensus 171 -------------------------R~~AR~~Lg~~~EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 171 -------------------------RMQARESLGNNMEAKKDCETVLALEPKNIEL 201 (536)
T ss_pred -------------------------HHHHHHHHhhHHHHHHhHHHHHhhCcccHHH
Confidence 3333334577778888888888888875443
No 266
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.20 E-value=0.54 Score=47.77 Aligned_cols=160 Identities=11% Similarity=0.023 Sum_probs=114.3
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCC-ChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHH----HHhhhccC
Q 001763 807 AKNGYAEDALKVFHEMKETQAMP-DDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACM----VDLLGRWG 881 (1017)
Q Consensus 807 ~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l----~~~l~~~g 881 (1017)
.-.|+..+|-..++++++. .| |-..+...-.+|...|+.+.-...++++... -.|+...|..+ .-.+...|
T Consensus 114 ~~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred hccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhc
Confidence 3578889999999999985 35 4467777778899999999999999988762 35666555433 45678899
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCC----CCCchHHHHHHHHHhcCCcHHHHHH
Q 001763 882 FLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEP----ENPSPYVQLSNIYAALGNWNEVNTL 955 (1017)
Q Consensus 882 ~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p----~~~~~~~~l~~~y~~~g~~~~a~~~ 955 (1017)
-+++|++..++. .++| |.=.-.++.......|...+|.+.-++--..=- .-.-.|-+.+-.|...+.++.|+++
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 999999998875 5655 332444566667788888888776554322111 1244566777788888999999999
Q ss_pred HHHHHHcCCccCCce
Q 001763 956 RREMREKGVKKFPGC 970 (1017)
Q Consensus 956 ~~~m~~~~~~~~~g~ 970 (1017)
+..=.-...+|..+.
T Consensus 270 yD~ei~k~l~k~Da~ 284 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAV 284 (491)
T ss_pred HHHHHHHHhhccchh
Confidence 987665666666553
No 267
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.18 E-value=1.4 Score=42.61 Aligned_cols=163 Identities=12% Similarity=0.112 Sum_probs=70.1
Q ss_pred HHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHH
Q 001763 774 YAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEG 850 (1017)
Q Consensus 774 y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a 850 (1017)
++-.+++++|.++|.+... +-.. .|+.-..+|++ |-++. ++.|-+-|. .||+-..++| +.+++++|
T Consensus 24 fgg~~k~eeAadl~~~Aan~yklaK-~w~~AG~aflk------aA~~h---~k~~skhDaat~YveA~~cy-kk~~~~eA 92 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERAANMYKLAK-NWSAAGDAFLK------AADLH---LKAGSKHDAATTYVEAANCY-KKVDPEEA 92 (288)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHH-hHHHHHHHHHH------HHHHH---HhcCCchhHHHHHHHHHHHh-hccChHHH
Confidence 3444567777777665432 1111 34444443332 11111 122223333 3444444333 33466666
Q ss_pred HHHHHHhhhhcC----CCcCchhHHHHHHhhhcc-CCHHHHHHHHHhCC-----CCCCHHHHHHHHHH---HHhcCCchH
Q 001763 851 RQIFETMVSCHG----IQPRVDHCACMVDLLGRW-GFLKEAEEFIEQLT-----FEPDSRIWTTLLGA---CGVHRDDIR 917 (1017)
Q Consensus 851 ~~~~~~m~~~~~----~~p~~~~~~~l~~~l~~~-g~~~eA~~~~~~~~-----~~p~~~~~~~ll~~---~~~~g~~~~ 917 (1017)
...++..++-|- ...-..++-.+.+.|..- .++++|+..+++.. -+.++..-..++.. -...+++.+
T Consensus 93 v~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~ 172 (288)
T KOG1586|consen 93 VNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSK 172 (288)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 665555443110 111122333344444322 45555555555431 11122222233311 223466777
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 001763 918 GRLAAKKLIELEPENPSPYVQLSNIYAALG 947 (1017)
Q Consensus 918 a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g 947 (1017)
|+..|+++....-+|+-.-+.+-.-+.+.|
T Consensus 173 Ai~iyeqva~~s~~n~LLKys~KdyflkAg 202 (288)
T KOG1586|consen 173 AIDIYEQVARSSLDNNLLKYSAKDYFLKAG 202 (288)
T ss_pred HHHHHHHHHHHhccchHHHhHHHHHHHHHH
Confidence 777777777666655544443333333333
No 268
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.12 E-value=13 Score=38.96 Aligned_cols=97 Identities=9% Similarity=-0.020 Sum_probs=51.3
Q ss_pred hHHHHHHHHhccCcHHH---HHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC-CC-hhHHHHHHHHH
Q 001763 731 TFVSVLRACAVLSSLRD---GGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE-RN-YVISWNSMIVG 805 (1017)
Q Consensus 731 t~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~ 805 (1017)
++..+..++...+..+. |..+.+.+....+. .+.++..-++++.+.++.+++.+++.+|.. .+ ....+...+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 45556666666665443 44444444433332 455565666666667788888888877765 22 22244444443
Q ss_pred H---HhCCCHHHHHHHHHHHHHCCCCC
Q 001763 806 F---AKNGYAEDALKVFHEMKETQAMP 829 (1017)
Q Consensus 806 ~---~~~g~~~~A~~~~~~m~~~g~~p 829 (1017)
+ .. .....|...+..++..-+.|
T Consensus 165 i~~l~~-~~~~~a~~~ld~~l~~r~~~ 190 (278)
T PF08631_consen 165 IKQLAE-KSPELAAFCLDYLLLNRFKS 190 (278)
T ss_pred HHHHHh-hCcHHHHHHHHHHHHHHhCC
Confidence 3 22 22344555555555433343
No 269
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.04 E-value=6.2 Score=42.38 Aligned_cols=74 Identities=12% Similarity=0.136 Sum_probs=49.6
Q ss_pred HHHHHHHcCCCchhHHHhhhcCCCC---Ccc----hHHHHHHHHHH---cCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 001763 196 ALIDMYAKLNNVSDARRVFDGAVDL---DTV----SWTSMIAGYVQ---AGLPEAAFELFEKMIKVGCVPDQVAFVTVIN 265 (1017)
Q Consensus 196 ~li~~~~~~g~~~~A~~~f~~~~~~---~~~----~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 265 (1017)
.|+-.|....+++...++++.+... +.. .--...-++-+ .|+.++|++++..+....-.++..||..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577778888888888876653 111 11123344556 7888999999888666666788888888887
Q ss_pred HHhc
Q 001763 266 VCFN 269 (1017)
Q Consensus 266 ~~~~ 269 (1017)
.|..
T Consensus 226 IyKD 229 (374)
T PF13281_consen 226 IYKD 229 (374)
T ss_pred HHHH
Confidence 7743
No 270
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.92 E-value=0.58 Score=46.36 Aligned_cols=99 Identities=14% Similarity=0.183 Sum_probs=74.1
Q ss_pred hHHHHhcccC--CCCchhHHHHHHHHHc-----CCChhhHHHHHHHHHhCCCCCChhhHHHHHHHhhcCC----------
Q 001763 108 LAEKVFDRLE--DRDILAWNSILSMYSK-----RGSFENVFKSFGLLCNRGGVPNGFTFAIVLSACSKSM---------- 170 (1017)
Q Consensus 108 ~A~~~f~~~~--~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~---------- 170 (1017)
..++.|...+ ++|-.+|-+++.-+.. .++.+---..++.|.+.|+.-|..+|..||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456777776 7788888888887764 3566666777889999999999999999999886542
Q ss_pred ------ChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHcCCC
Q 001763 171 ------DVSYGRQLHCHVIELGFESSSFCKGALIDMYAKLNN 206 (1017)
Q Consensus 171 ------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 206 (1017)
.-+.+..++++|.-.|+.||-.+-..|++++++.|-
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 234567777777777777777777777777766554
No 271
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.87 E-value=0.16 Score=33.56 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=21.1
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHH
Q 001763 935 PYVQLSNIYAALGNWNEVNTLRREMR 960 (1017)
Q Consensus 935 ~~~~l~~~y~~~g~~~~a~~~~~~m~ 960 (1017)
++..||++|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46789999999999999999988744
No 272
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.80 E-value=5.1 Score=36.73 Aligned_cols=90 Identities=14% Similarity=0.159 Sum_probs=54.4
Q ss_pred CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHhcCCCCccchHHHHHHHhc
Q 001763 221 DTVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEARELFAQMQNPNVVAWNVMISGHAK 300 (1017)
Q Consensus 221 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 300 (1017)
+......+|..+...+.+.....+++.+...+ ..+...++.++..|++.+ ..+..+.+.. ..+.......+..+.+
T Consensus 6 ~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 6 DPIDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEK 81 (140)
T ss_pred CcCCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHH
Confidence 33445667777877888888888888888776 366677888888887653 2333344432 2223333335555555
Q ss_pred cCCchHHHHHHHHH
Q 001763 301 RGYDAEAVNYFKRM 314 (1017)
Q Consensus 301 ~g~~~~A~~~~~~m 314 (1017)
.+.++++..++.++
T Consensus 82 ~~l~~~~~~l~~k~ 95 (140)
T smart00299 82 AKLYEEAVELYKKD 95 (140)
T ss_pred cCcHHHHHHHHHhh
Confidence 55555555555443
No 273
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.75 E-value=0.18 Score=32.70 Aligned_cols=32 Identities=22% Similarity=0.139 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC
Q 001763 901 IWTTLLGACGVHRDDIRGRLAAKKLIELEPEN 932 (1017)
Q Consensus 901 ~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~ 932 (1017)
+|..++..+...|+++.|...++++++++|+|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 57777788888899999999999999988853
No 274
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.72 E-value=24 Score=41.01 Aligned_cols=47 Identities=19% Similarity=0.163 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHhcCCCCCchhHHHHHHHHhhCCc
Q 001763 561 IYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNV 607 (1017)
Q Consensus 561 ~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 607 (1017)
..+....++.+.-.|++++|-...-.|...+..-|.--+..+...+.
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccc
Confidence 44667778888888888888888888887777777766666555443
No 275
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.67 E-value=1 Score=44.75 Aligned_cols=104 Identities=21% Similarity=0.355 Sum_probs=77.6
Q ss_pred HHHHHhcc--CCChhHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCC-----------
Q 001763 784 AQVFDEMA--ERNYVISWNSMIVGFAKN-----GYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAG----------- 845 (1017)
Q Consensus 784 ~~~~~~~~--~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g----------- 845 (1017)
++.|..+. +++-. +|-+++..+..+ +..+=....++.|.+-|+.-|..+|..|++.+=+..
T Consensus 54 e~~F~aa~~~~RdK~-sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKD-SFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhccCcccccHH-HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 34455554 35555 777777777654 455666678889999999989999999998765433
Q ss_pred -----cHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCC-HHHHHHH
Q 001763 846 -----RVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGF-LKEAEEF 889 (1017)
Q Consensus 846 -----~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~-~~eA~~~ 889 (1017)
+-+=+++++++|.. +|+.||-+.-..++++++|.|. +.+-.++
T Consensus 133 ~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm 181 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPTKKVKRM 181 (406)
T ss_pred hhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccHHHHHHH
Confidence 23458899999987 9999999999999999999998 3344443
No 276
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.54 E-value=5.1 Score=43.87 Aligned_cols=148 Identities=14% Similarity=0.050 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC---ChHhHHHHHHHcccCCcHHHHHHHHHHhhhh-cCCCcCchhHHH
Q 001763 797 ISWNSMIVGFAKNGYAEDALKVFHEMKETQAMP---DDVTFLGVLTACSHAGRVSEGRQIFETMVSC-HGIQPRVDHCAC 872 (1017)
Q Consensus 797 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~~p~~~~~~~ 872 (1017)
.+|..++..+.++|+++.|...+.++...+..+ +......-+...-..|+.++|+..++..++. ..-..+......
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~ 226 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAE 226 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHH
Confidence 478888888888999988888888887743111 1223333445556678888888888777661 111111111111
Q ss_pred HHHhhhccCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CCchHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 001763 873 MVDLLGRWGFLKEAEEF-IEQLTFEPDSRIWTTLLGACGVH------RDDIRGRLAAKKLIELEPENPSPYVQLSNIYAA 945 (1017)
Q Consensus 873 l~~~l~~~g~~~eA~~~-~~~~~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~ 945 (1017)
+...+.. ..+..... ........-..++..++..+... ++.+.+...|+.+++++|....++..++..+..
T Consensus 227 ~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 227 LKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDK 304 (352)
T ss_pred Hhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 1111000 00000000 00000000012344444444444 788999999999999999999999998888765
Q ss_pred c
Q 001763 946 L 946 (1017)
Q Consensus 946 ~ 946 (1017)
.
T Consensus 305 ~ 305 (352)
T PF02259_consen 305 L 305 (352)
T ss_pred H
Confidence 5
No 277
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.49 E-value=22 Score=40.07 Aligned_cols=181 Identities=14% Similarity=0.129 Sum_probs=126.0
Q ss_pred CcchHhHHHhHHHhcCCHHHHHHHHHhccCCC--hhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHH
Q 001763 763 DEITGSALIDMYAKCGDVKRSAQVFDEMAERN--YVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLT 839 (1017)
Q Consensus 763 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~ 839 (1017)
+...|..-++.-.+.|+.+.+.-+|++...+- ....|-..+.-....|+.+-|..++....+--. |+. .+-..-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~-k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHV-KKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC-CCCcHHHHHHHH
Confidence 34566777777888999999999999876532 223677776666666888888877766665432 333 33333334
Q ss_pred HcccCCcHHHHHHHHHHhhhhcCCCcCch-hHHHHHHhhhccCCHHHHH---HHHHhC-CCCCCHHHHH----HHHHH-H
Q 001763 840 ACSHAGRVSEGRQIFETMVSCHGIQPRVD-HCACMVDLLGRWGFLKEAE---EFIEQL-TFEPDSRIWT----TLLGA-C 909 (1017)
Q Consensus 840 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~l~~~g~~~eA~---~~~~~~-~~~p~~~~~~----~ll~~-~ 909 (1017)
.+...|+.+.|..+++.+.+++ |+.. .-.--+....|.|.++.+. +++... +..-+..+.. .+... +
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 4678999999999999998854 6543 3344466788999999988 555543 2222222222 22222 3
Q ss_pred HhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 001763 910 GVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALG 947 (1017)
Q Consensus 910 ~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g 947 (1017)
...++.+.|...+.++++..|++..-|..+.++-...+
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 35689999999999999999999999999998877766
No 278
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.26 E-value=1.4 Score=41.59 Aligned_cols=108 Identities=14% Similarity=0.136 Sum_probs=72.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh------HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHH
Q 001763 799 WNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD------VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCAC 872 (1017)
Q Consensus 799 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 872 (1017)
...=.+-+...|++++|..-|.+.++. -|.. +.|..-..+..+.+.|+.|+.-..+.++ +-|...-.
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kA-- 170 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKA-- 170 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHH--
Confidence 344577788999999999999999994 4432 4566667788899999999998888776 44432210
Q ss_pred HHHhhhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHH
Q 001763 873 MVDLLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNI 942 (1017)
Q Consensus 873 l~~~l~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~ 942 (1017)
...-..+|-+...++.|+.-|+++++++|.+..+.-..+.+
T Consensus 171 -----------------------------l~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 171 -----------------------------LERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred -----------------------------HHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 00112234444566777777888888888666555544443
No 279
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.02 E-value=0.18 Score=32.73 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=22.8
Q ss_pred HHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHH
Q 001763 752 HSLIFHTGYDLDEITGSALIDMYAKCGDVKRSA 784 (1017)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~ 784 (1017)
++++++..|. ++.+|+.|+.+|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 3455666665 7777778888888888877775
No 280
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.98 E-value=0.4 Score=33.39 Aligned_cols=32 Identities=19% Similarity=0.478 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD 831 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 831 (1017)
.|..+...|...|++++|+++|+++++ ..||.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~ 34 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDD 34 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCC
Confidence 566777778888888888888888777 45665
No 281
>PRK11619 lytic murein transglycosylase; Provisional
Probab=91.93 E-value=32 Score=40.72 Aligned_cols=76 Identities=9% Similarity=-0.035 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHhhCCCCCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHh
Q 001763 662 DFLHIALLSMYMNSKRNTDARLLFTEFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACA 740 (1017)
Q Consensus 662 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~ 740 (1017)
......-...+.+.+++.+..+++..- |.+.........+....|+.++|....+++-..|. ........+++...
T Consensus 99 ~~Lr~~~l~~La~~~~w~~~~~~~~~~--p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~ 174 (644)
T PRK11619 99 RSLQSRFVNELARREDWRGLLAFSPEK--PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQ 174 (644)
T ss_pred HHHHHHHHHHHHHccCHHHHHHhcCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHH
Confidence 333334444556677777777633222 24444555666677777877777777777655442 22233444444443
No 282
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.88 E-value=1.1 Score=49.78 Aligned_cols=74 Identities=19% Similarity=0.216 Sum_probs=34.3
Q ss_pred hhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHH
Q 001763 877 LGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLR 956 (1017)
Q Consensus 877 l~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 956 (1017)
-.+.|+++.|.+..++.. ++..|..|+.....+||++.|+.+++++ .-+..|.-+|...|+-++-.++-
T Consensus 328 Al~lg~L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~ 396 (443)
T PF04053_consen 328 ALQLGNLDIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLA 396 (443)
T ss_dssp HHHCT-HHHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHH
T ss_pred HHhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHH
Confidence 344555555555444322 4445555555555555555555555542 23344444555555544444444
Q ss_pred HHHHH
Q 001763 957 REMRE 961 (1017)
Q Consensus 957 ~~m~~ 961 (1017)
+...+
T Consensus 397 ~~a~~ 401 (443)
T PF04053_consen 397 KIAEE 401 (443)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 43333
No 283
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.81 E-value=6.1 Score=38.54 Aligned_cols=100 Identities=14% Similarity=0.257 Sum_probs=62.4
Q ss_pred HHHHHcccC-CcHHHHHHHHHHhhhhcCCCcC-chhHHHHH---HhhhccCCHHHHHHHHHhCC---CCCCHHHHHH---
Q 001763 836 GVLTACSHA-GRVSEGRQIFETMVSCHGIQPR-VDHCACMV---DLLGRWGFLKEAEEFIEQLT---FEPDSRIWTT--- 904 (1017)
Q Consensus 836 ~l~~~~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~---~~l~~~g~~~eA~~~~~~~~---~~p~~~~~~~--- 904 (1017)
.+...|... .++++|+..|+..-+-|..+.. ...--|++ +.-...|++.+|++.++++. ...+-.-|..
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy 197 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY 197 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence 344455433 6777888888877664433322 22223443 33467788999999988763 2222223433
Q ss_pred HH--HHHHhc-CCchHHHHHHHHHHhhCCCCCch
Q 001763 905 LL--GACGVH-RDDIRGRLAAKKLIELEPENPSP 935 (1017)
Q Consensus 905 ll--~~~~~~-g~~~~a~~~~~~~l~~~p~~~~~ 935 (1017)
++ +.|... .|.--+..++++..+++|.....
T Consensus 198 flkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 198 FLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 33 457766 78888999999999999965544
No 284
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=91.68 E-value=0.4 Score=42.67 Aligned_cols=94 Identities=10% Similarity=0.099 Sum_probs=69.0
Q ss_pred cchHhHHHhHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHccc
Q 001763 764 EITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSH 843 (1017)
Q Consensus 764 ~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 843 (1017)
..++..++-++++.|+++....++++.-.-+.. +-...+. --......|+..++.+++.+|+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~--------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~ 64 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN--------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGY 64 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC--------CccccCc---------cCCCCCCCCCHHHHHHHHHHHHh
Confidence 456777888888888888888888765543322 1111111 11124467899999999999999
Q ss_pred CCcHHHHHHHHHHhhhhcCCCcCchhHHHHH
Q 001763 844 AGRVSEGRQIFETMVSCHGIQPRVDHCACMV 874 (1017)
Q Consensus 844 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 874 (1017)
.|++..|.++.+...+.|+++-....+..|.
T Consensus 65 n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 65 NGDIFSALKLVDFFSRKYPIPIPKEFWRRLL 95 (126)
T ss_pred cccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 9999999999999999999877777777665
No 285
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.27 E-value=0.32 Score=32.07 Aligned_cols=29 Identities=10% Similarity=-0.048 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhhC
Q 001763 901 IWTTLLGACGVHRDDIRGRLAAKKLIELE 929 (1017)
Q Consensus 901 ~~~~ll~~~~~~g~~~~a~~~~~~~l~~~ 929 (1017)
+|..|+.+|...|++++|+..+++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 46788888999999999999999966553
No 286
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.21 E-value=8 Score=38.03 Aligned_cols=88 Identities=11% Similarity=0.121 Sum_probs=53.9
Q ss_pred chHhHHHhHHHhcCCHHHHHHHHHhccC--------CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--CCCC-hHh
Q 001763 765 ITGSALIDMYAKCGDVKRSAQVFDEMAE--------RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQ--AMPD-DVT 833 (1017)
Q Consensus 765 ~~~~~l~~~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~~p~-~~~ 833 (1017)
..+.....+|.+..++++|-..|.+-.. +..-..+.+.|-.|....++..|...+++--+.+ ..|+ ..+
T Consensus 151 el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~ 230 (308)
T KOG1585|consen 151 ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRS 230 (308)
T ss_pred HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHH
Confidence 3455566777788888888777765432 1111134455566666778888888888765532 1232 357
Q ss_pred HHHHHHHcccCCcHHHHHHH
Q 001763 834 FLGVLTACSHAGRVSEGRQI 853 (1017)
Q Consensus 834 ~~~l~~~~~~~g~~~~a~~~ 853 (1017)
.-.|+.+|. .|+.+++..+
T Consensus 231 lenLL~ayd-~gD~E~~~kv 249 (308)
T KOG1585|consen 231 LENLLTAYD-EGDIEEIKKV 249 (308)
T ss_pred HHHHHHHhc-cCCHHHHHHH
Confidence 777887765 5666665554
No 287
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.19 E-value=35 Score=39.73 Aligned_cols=74 Identities=20% Similarity=0.169 Sum_probs=38.4
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCC---ChhhHHHHHHHHhccCCHHHHHHHHHhcCCCCccchHHHHHHHhccCCch
Q 001763 230 AGYVQAGLPEAAFELFEKMIKVGCVP---DQVAFVTVINVCFNLGRLDEARELFAQMQNPNVVAWNVMISGHAKRGYDA 305 (1017)
Q Consensus 230 ~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~ 305 (1017)
.-+.+.+.+++|++..+.-. |..| -.......|..+.-.|++++|-...-.|...+..-|.--+..+...++..
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 34455566666665544321 2222 12234455555666666666666666665555555555555555544443
No 288
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=91.15 E-value=25 Score=37.95 Aligned_cols=417 Identities=13% Similarity=0.100 Sum_probs=208.2
Q ss_pred CchhhHHHHHHHHhhccCChhHHHHHHhhcCCCCcc---cchhhhHHhHhcCCHHHHHHHHHHhhccCCCCCcccHHHHH
Q 001763 456 ATNLYVGNALVDMYAKSRALEEARKQFERIQNQDNV---SWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASIL 532 (1017)
Q Consensus 456 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll 532 (1017)
+.|+..|-.||.-|...|.+++-++++++|..|-.. +|..-+++-...+++.....+|.+-+...+..| .|...|
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ld--LW~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLD--LWMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHh--HHHHHH
Confidence 457778888899898899999999999998876443 688888877777888888888888776655433 333344
Q ss_pred HHhhcccCCCcch------hHHHHHhh-hCCCCCchHHHHHHHHHHH---------HcCCHHHHHHHHhcCCCC---Cch
Q 001763 533 SACANIQGLPQGE------QVHCFSVK-TSLETSNIYVGSSLIDMYV---------KCGFIGAAHKVLSCMPQR---NVV 593 (1017)
Q Consensus 533 ~a~~~~~~~~~~~------~i~~~~~~-~~~~~~~~~~~~~l~~~y~---------~~g~~~~A~~~~~~~~~~---~~~ 593 (1017)
.-.-+.+..-.|+ +.++..+. .+++|.....|+..++... ...++|..++.+.++... |..
T Consensus 117 ~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nle 196 (660)
T COG5107 117 EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLE 196 (660)
T ss_pred HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHH
Confidence 4333444333332 22333332 4555555566666555432 123445566666666541 111
Q ss_pred -hHH------HHHHH-----HhhCCch---HHHHHHHHHHH--cCCCCCh----HHHH-----------HHHHhccCC--
Q 001763 594 -SMN------ALIAG-----YAQNNVE---DAVVLYRGMQT--EGLSPND----ITFT-----------SLLDACDGP-- 639 (1017)
Q Consensus 594 -~~~------~li~~-----~~~~~~~---~A~~l~~~m~~--~g~~p~~----~t~~-----------~ll~a~~~~-- 639 (1017)
.|+ .=+.. +.....+ .|.+.+++... .|.+.-. .|++ ..+.--...
T Consensus 197 klW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l 276 (660)
T COG5107 197 KLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGL 276 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCc
Confidence 222 11211 2222222 56666666643 3443221 2222 222111100
Q ss_pred ---Cc-cch-hhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCC-CCCceeehhhhhhccc-CCCchH
Q 001763 640 ---YK-FHL-GTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPN-PKSTVLWTAVISGHAQ-NDSNYE 712 (1017)
Q Consensus 640 ---~~-~~~-a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~-~g~~~~ 712 (1017)
++ ... .--+|++++..- |-.+.++..-...+...++-+.|......-.. .|+ .+...+-|.. ..+-++
T Consensus 277 ~L~~~~~~qRi~y~~~q~~~y~--~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~ 351 (660)
T COG5107 277 KLGGRPHEQRIHYIHNQILDYF--YYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEA 351 (660)
T ss_pred ccCCCcHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHH
Confidence 11 111 111233333322 34555565555566666777777766655432 222 1111222222 233333
Q ss_pred HHHHHHHHHHCCCCcCHHhHHHHHHHH---hccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHh
Q 001763 713 ALHFYREMRSHNVLPDQATFVSVLRAC---AVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDE 789 (1017)
Q Consensus 713 A~~~~~~m~~~~~~pd~~t~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 789 (1017)
.-..|++..+. ...=.+.+.+- ...|+.+.-.+.+-.-+. + -..++.++++.-.+..-++.|+.+|-+
T Consensus 352 v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~---k-~t~v~C~~~N~v~r~~Gl~aaR~~F~k 422 (660)
T COG5107 352 VYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLLKRIN---K-LTFVFCVHLNYVLRKRGLEAARKLFIK 422 (660)
T ss_pred HhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHHHHHh---h-hhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33334443221 00000011100 112223222222111110 1 234666677777777777778888877
Q ss_pred ccCCChh----HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHH-HHHHHcccCCcHHHHHHHHHHhhhhcCCC
Q 001763 790 MAERNYV----ISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFL-GVLTACSHAGRVSEGRQIFETMVSCHGIQ 864 (1017)
Q Consensus 790 ~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 864 (1017)
..+.+.+ -.+++++.-++. |+..-|..+|+--+. ..||...|. -.+.-+...++-+.|..+|+..++. +.
T Consensus 423 ~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~--~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r--~~ 497 (660)
T COG5107 423 LRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLL--KFPDSTLYKEKYLLFLIRINDEENARALFETSVER--LE 497 (660)
T ss_pred HhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH--HH
Confidence 7664422 145566665544 666777777776555 346654432 2333345567777777777765542 22
Q ss_pred cC--chhHHHHHHhhhccCCHHHHHHHHHhC
Q 001763 865 PR--VDHCACMVDLLGRWGFLKEAEEFIEQL 893 (1017)
Q Consensus 865 p~--~~~~~~l~~~l~~~g~~~eA~~~~~~~ 893 (1017)
.+ ...|..|++--..-|.+..+..+-+++
T Consensus 498 ~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf 528 (660)
T COG5107 498 KTQLKRIYDKMIEYESMVGSLNNVYSLEERF 528 (660)
T ss_pred HhhhhHHHHHHHHHHHhhcchHHHHhHHHHH
Confidence 22 345666666555666666666555444
No 289
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.85 E-value=0.47 Score=30.67 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPD 830 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 830 (1017)
+|..++..|...|++++|+..|++.++ +.|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 678888888888888888888888888 5665
No 290
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.65 E-value=7.5 Score=35.91 Aligned_cols=95 Identities=14% Similarity=0.009 Sum_probs=53.6
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCChhHHH-HHHHHHHHhCCCHHH
Q 001763 736 LRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISW-NSMIVGFAKNGYAED 814 (1017)
Q Consensus 736 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~ 814 (1017)
++.-...++.+.+..++..+.-..|. .+..-..-+..+.+.|+|++|+.+|+++........+ .+|+..|....+-..
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 34445566777777777777666665 4455555566677788888888888887764443122 344443333322222
Q ss_pred HHHHHHHHHHCCCCCCh
Q 001763 815 ALKVFHEMKETQAMPDD 831 (1017)
Q Consensus 815 A~~~~~~m~~~g~~p~~ 831 (1017)
--..-+++++.+-.|+.
T Consensus 96 Wr~~A~evle~~~d~~a 112 (160)
T PF09613_consen 96 WRRYADEVLESGADPDA 112 (160)
T ss_pred HHHHHHHHHhcCCChHH
Confidence 33334455555434443
No 291
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.35 E-value=5.7 Score=36.65 Aligned_cols=94 Identities=16% Similarity=0.146 Sum_probs=50.6
Q ss_pred ccCCcHHHHHHHHHHhhhhcCCCcCch-hHHHHHHhhhccCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCchHHH
Q 001763 842 SHAGRVSEGRQIFETMVSCHGIQPRVD-HCACMVDLLGRWGFLKEAEEFIEQLT-FEPDSRIWTTLLGACGVHRDDIRGR 919 (1017)
Q Consensus 842 ~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~l~~~g~~~eA~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~ 919 (1017)
...++.+++..++..+.- +.|... +-.+-+.++.+.|++.+|+.+++++. -.|....-.+|+..|.....-..=.
T Consensus 21 l~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH
Confidence 345566666666666654 455432 22333445566677777777776653 3344445566776666544333334
Q ss_pred HHHHHHHhhCCCCCchHHHH
Q 001763 920 LAAKKLIELEPENPSPYVQL 939 (1017)
Q Consensus 920 ~~~~~~l~~~p~~~~~~~~l 939 (1017)
..++.+++..| ++.+...+
T Consensus 98 ~~A~evle~~~-d~~a~~Lv 116 (160)
T PF09613_consen 98 RYADEVLESGA-DPDARALV 116 (160)
T ss_pred HHHHHHHhcCC-ChHHHHHH
Confidence 44556666665 34343333
No 292
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.95 E-value=0.5 Score=48.06 Aligned_cols=84 Identities=14% Similarity=0.060 Sum_probs=58.0
Q ss_pred HhhhccCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHH
Q 001763 875 DLLGRWGFLKEAEEFIEQ-LTFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEV 952 (1017)
Q Consensus 875 ~~l~~~g~~~eA~~~~~~-~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a 952 (1017)
+-|-++|+++||++.+.+ |...| +++.+.+-..+|.+...+..|+.-.+.++.++-....+|..-+..-...|+..+|
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 346667777777777765 44566 6667777777777777777777777777777776666777777666677776666
Q ss_pred HHHHHH
Q 001763 953 NTLRRE 958 (1017)
Q Consensus 953 ~~~~~~ 958 (1017)
.+-.+.
T Consensus 185 KkD~E~ 190 (536)
T KOG4648|consen 185 KKDCET 190 (536)
T ss_pred HHhHHH
Confidence 554433
No 293
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=89.47 E-value=13 Score=32.74 Aligned_cols=60 Identities=12% Similarity=0.168 Sum_probs=26.3
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCCh
Q 001763 735 VLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNY 795 (1017)
Q Consensus 735 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~ 795 (1017)
.+++....|.-+.-..+...+.+ +-++++.....+..+|.+.|+..+|.+++.+..+++.
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34444455555555555444443 2223455555555555555555555555555544444
No 294
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=89.43 E-value=42 Score=37.93 Aligned_cols=144 Identities=12% Similarity=0.053 Sum_probs=71.8
Q ss_pred HHhcCChHHHHHHHhhCCC----------CCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhc
Q 001763 672 YMNSKRNTDARLLFTEFPN----------PKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAV 741 (1017)
Q Consensus 672 ~~~~g~~~~A~~~~~~~~~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~ 741 (1017)
|-..-...+.+-.|+.... +.+...|..-+.-....|+.+...-+|++..--=-.-| .-|..-+.-...
T Consensus 265 ~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~-efWiky~~~m~~ 343 (577)
T KOG1258|consen 265 YQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYD-EFWIKYARWMES 343 (577)
T ss_pred HHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhH-HHHHHHHHHHHH
Confidence 3344445555555555433 12335666666666777777777777777642100001 112222222333
Q ss_pred cCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHH
Q 001763 742 LSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDAL 816 (1017)
Q Consensus 742 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 816 (1017)
.|+.+.+..+..+..+...+..+.+.-.-...--..|++++|..+++.+.. +|.+..-.--+......|+.+.+.
T Consensus 344 ~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 344 SGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred cCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 366666666666555544432332222222223345677777777776654 444422222344445556666555
No 295
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.28 E-value=0.16 Score=47.01 Aligned_cols=83 Identities=16% Similarity=0.138 Sum_probs=54.4
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHcCCCchhHHHhhhcCCCCCcchHHHHHHHHHHcCChhHH
Q 001763 162 VLSACSKSMDVSYGRQLHCHVIELGFESSSFCKGALIDMYAKLNNVSDARRVFDGAVDLDTVSWTSMIAGYVQAGLPEAA 241 (1017)
Q Consensus 162 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 241 (1017)
+++.+.+.+.+......++.+...+...+....+.++..|++.++.+...++++.... .-...++..+-+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4555556666777777777777766666778888888888888888888888774332 3334556666666666666
Q ss_pred HHHHHH
Q 001763 242 FELFEK 247 (1017)
Q Consensus 242 ~~~~~~ 247 (1017)
.-++.+
T Consensus 90 ~~Ly~~ 95 (143)
T PF00637_consen 90 VYLYSK 95 (143)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 655544
No 296
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.28 E-value=0.47 Score=43.86 Aligned_cols=87 Identities=14% Similarity=0.147 Sum_probs=68.5
Q ss_pred HHHHhhhcccchHhhHHHHHHHHHhcCCchhhHHHHHHHHhhccCChhHHHHHHhhcCCCCcccchhhhHHhHhcCCHHH
Q 001763 429 SILSSCACLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVFE 508 (1017)
Q Consensus 429 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 508 (1017)
.++..+.+.+..+....+++.+.+.+...+..+.+.++..|++.+..+...++++.. +..-...++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~---~~yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS---NNYDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS---SSS-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc---cccCHHHHHHHHHhcchHHH
Confidence 456677777888888889999988777778899999999999998888888888733 33555678888888999999
Q ss_pred HHHHHHHhhc
Q 001763 509 AFNMFRRMNL 518 (1017)
Q Consensus 509 A~~~~~~m~~ 518 (1017)
|.-++.++..
T Consensus 89 a~~Ly~~~~~ 98 (143)
T PF00637_consen 89 AVYLYSKLGN 98 (143)
T ss_dssp HHHHHHCCTT
T ss_pred HHHHHHHccc
Confidence 9999888654
No 297
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=88.89 E-value=31 Score=36.46 Aligned_cols=77 Identities=16% Similarity=-0.010 Sum_probs=44.3
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHH----hcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC-------------
Q 001763 885 EAEEFIEQLTFEPDSRIWTTLLGACG----VHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALG------------- 947 (1017)
Q Consensus 885 eA~~~~~~~~~~p~~~~~~~ll~~~~----~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g------------- 947 (1017)
.|...+.+....-++.....|+..+. ...|.++|...|+++-+... ....+.++ ++...|
T Consensus 173 ~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~ 249 (292)
T COG0790 173 KALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAK 249 (292)
T ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhccccc
Confidence 45555555422223334444443331 23377888888888888776 66777777 666555
Q ss_pred --CcHHHHHHHHHHHHcCC
Q 001763 948 --NWNEVNTLRREMREKGV 964 (1017)
Q Consensus 948 --~~~~a~~~~~~m~~~~~ 964 (1017)
++..|...+.+..+.+.
T Consensus 250 ~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 250 EEDKKQALEWLQKACELGF 268 (292)
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 55666666665555444
No 298
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.64 E-value=0.77 Score=29.57 Aligned_cols=31 Identities=23% Similarity=0.434 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPD 830 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 830 (1017)
.|..+...+...|++++|++.|++.++ +.|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 567777788888888888888888777 4554
No 299
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.62 E-value=17 Score=34.04 Aligned_cols=130 Identities=13% Similarity=0.121 Sum_probs=67.9
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHcCCCchhHHHhhhcCCCCCcchHHHHHHHHHHcC--ChhHHHHHHHHHHHcCCCCC
Q 001763 179 HCHVIELGFESSSFCKGALIDMYAKLNNVSDARRVFDGAVDLDTVSWTSMIAGYVQAG--LPEAAFELFEKMIKVGCVPD 256 (1017)
Q Consensus 179 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~ 256 (1017)
...+.+.|+.++...+..+|+.+.+.|++.....++.--+-+|.......+-.+.... -..-|++++.++..
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~------ 90 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT------ 90 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh------
Confidence 3344455666666666667777777666666666665444444333333332221111 12233444444321
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHhcCCCCccchHHHHHHHhccCCchHHHHHHHHHHh
Q 001763 257 QVAFVTVINVCFNLGRLDEARELFAQMQNPNVVAWNVMISGHAKRGYDAEAVNYFKRMRK 316 (1017)
Q Consensus 257 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 316 (1017)
.+..+++.+...|++-+|.++.+....-+......++.+-.+.+|...-..+|+-..+
T Consensus 91 --~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 91 --AYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred --hHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2455666677777777777777665544444445555555555555544444444443
No 300
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.23 E-value=26 Score=33.93 Aligned_cols=82 Identities=9% Similarity=-0.196 Sum_probs=52.3
Q ss_pred CccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCC--CCCceeehhhhhhcccCCCchHHHHHH
Q 001763 640 YKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYEALHFY 717 (1017)
Q Consensus 640 ~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~ 717 (1017)
|.+..|+--+.+.+... |.-+.+++-|+-.+...|+++.|.+.|+.+.+ |...-+.-.-+-++.-.|++.-|.+-|
T Consensus 79 GL~~LAR~DftQaLai~--P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcC--CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHH
Confidence 44444554455555444 77788888888888889999999998888776 222222222233344567787777766
Q ss_pred HHHHHC
Q 001763 718 REMRSH 723 (1017)
Q Consensus 718 ~~m~~~ 723 (1017)
.+.-+.
T Consensus 157 ~~fYQ~ 162 (297)
T COG4785 157 LAFYQD 162 (297)
T ss_pred HHHHhc
Confidence 665544
No 301
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.01 E-value=41 Score=39.76 Aligned_cols=85 Identities=19% Similarity=0.161 Sum_probs=37.2
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHH-HHHHhcC-CCCccchHHHHHHHhcc---CCc
Q 001763 230 AGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEAR-ELFAQMQ-NPNVVAWNVMISGHAKR---GYD 304 (1017)
Q Consensus 230 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~-~~~~~m~-~~~~~~~~~li~~~~~~---g~~ 304 (1017)
..+.-.|.+|.|++++-+ ..+...|.+.+...+.-|.-.+-.+... .++..-. .+...-+..||..|++. .+.
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~td~ 343 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEITDP 343 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT------------------------HHHHHHHHHHTTTTT-H
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhccCH
Confidence 445667888888888776 2233445555555544433222111111 1111111 12224567778777763 566
Q ss_pred hHHHHHHHHHHh
Q 001763 305 AEAVNYFKRMRK 316 (1017)
Q Consensus 305 ~~A~~~~~~m~~ 316 (1017)
.+|.+.|--+..
T Consensus 344 ~~Al~Y~~li~~ 355 (613)
T PF04097_consen 344 REALQYLYLICL 355 (613)
T ss_dssp HHHHHHHHGGGG
T ss_pred HHHHHHHHHHHH
Confidence 677777666554
No 302
>PRK12798 chemotaxis protein; Reviewed
Probab=87.87 E-value=44 Score=36.20 Aligned_cols=168 Identities=14% Similarity=0.176 Sum_probs=107.5
Q ss_pred hcCCHHHHHHHHHhccCCChh---HHHHHHHHH-HHhCCCHHHHHHHHHHHHHCCCCCCh----HhHHHHHHHcccCCcH
Q 001763 776 KCGDVKRSAQVFDEMAERNYV---ISWNSMIVG-FAKNGYAEDALKVFHEMKETQAMPDD----VTFLGVLTACSHAGRV 847 (1017)
Q Consensus 776 ~~g~~~~A~~~~~~~~~~~~~---~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~ 847 (1017)
-.|+-++|.+.+..+...... -.+-.|+.+ .....+..+|+++|++..- .-|-. .....-+....+.|+.
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcH
Confidence 368888888888877652221 245566554 4455688899999998876 45643 2344445566788999
Q ss_pred HHHHHHHHHhhhhcCCCcCchhHH-HHHHhhhccC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHH
Q 001763 848 SEGRQIFETMVSCHGIQPRVDHCA-CMVDLLGRWG---FLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAK 923 (1017)
Q Consensus 848 ~~a~~~~~~m~~~~~~~p~~~~~~-~l~~~l~~~g---~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 923 (1017)
+++..+-..-...|.-.|=...+. .++.++.+.+ +.+.-.+++..|.-.-...+|..+...-...|+.+.|..+.+
T Consensus 202 ~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 202 DKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 988888777777677677655443 3334443333 333333444444322234477777777778999999999999
Q ss_pred HHHhhCCCCCchHHHHHHHHHhc
Q 001763 924 KLIELEPENPSPYVQLSNIYAAL 946 (1017)
Q Consensus 924 ~~l~~~p~~~~~~~~l~~~y~~~ 946 (1017)
+++.+.. ....-...+++|...
T Consensus 282 ~A~~L~~-~~~~~~~ra~LY~aa 303 (421)
T PRK12798 282 RALKLAD-PDSADAARARLYRGA 303 (421)
T ss_pred HHHHhcc-CCCcchHHHHHHHHH
Confidence 9999974 344445556666543
No 303
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=87.65 E-value=8.7 Score=42.92 Aligned_cols=106 Identities=10% Similarity=0.074 Sum_probs=64.8
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHhCCCCchhhhHHHHHHHHccCChhHHHHHHhhcCCCCcchHHHHHHHHHhCCCh
Q 001763 326 LGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFDSLDERNAVLWNALLGGYSQNCYA 405 (1017)
Q Consensus 326 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 405 (1017)
...+++.+.+.|-.+.|.++-..-. .-.+...++|+++.|.++.+... +...|..|.....++|++
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~ 363 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNI 363 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCH
Confidence 4555555555666665555532211 12345667899999988877665 556899999999999999
Q ss_pred hHHHHHHHhhhhcCCCCChhcHHHHHHhhhcccchHhhHHHHHHHHHhc
Q 001763 406 HEVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNK 454 (1017)
Q Consensus 406 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 454 (1017)
+-|.+.|.+..+ |..++-.+...|+.+.-..+.......|
T Consensus 364 ~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 364 ELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 999999888654 3344444444555555555554444433
No 304
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.58 E-value=26 Score=42.79 Aligned_cols=111 Identities=14% Similarity=0.095 Sum_probs=55.4
Q ss_pred HHHHHHHHHcCCCchhHHHhhhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCH
Q 001763 194 KGALIDMYAKLNNVSDARRVFDGAVDLDTVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRL 273 (1017)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 273 (1017)
+.-.++.--+.|-+.+|..++..-.+.-.+.|.+...-+.+.+.+++|.-+|+..-+. ..-+.+|-.+|+|
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dW 981 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDW 981 (1265)
T ss_pred cHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccH
Confidence 3344444445566666666554444444445555666666677777776666553221 1234455555555
Q ss_pred HHHHHHHHhcCCCCccc---hHHHHHHHhccCCchHHHHHHHH
Q 001763 274 DEARELFAQMQNPNVVA---WNVMISGHAKRGYDAEAVNYFKR 313 (1017)
Q Consensus 274 ~~A~~~~~~m~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~ 313 (1017)
.+|+.+-.++..+-... -..|+.-+...+++-+|-++..+
T Consensus 982 r~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e 1024 (1265)
T KOG1920|consen 982 REALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLE 1024 (1265)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Confidence 55555555554322111 13444444444444444444444
No 305
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.55 E-value=4.5 Score=38.80 Aligned_cols=60 Identities=15% Similarity=0.129 Sum_probs=40.5
Q ss_pred chHhHHHhHHHhcCCHHHHHHHHHhccCCCh-----hHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 001763 765 ITGSALIDMYAKCGDVKRSAQVFDEMAERNY-----VISWNSMIVGFAKNGYAEDALKVFHEMKE 824 (1017)
Q Consensus 765 ~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 824 (1017)
..+..+++.|++.|++++|.+.+.++..... ...+..+|......|++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3455677778888888888888877765322 13456677777777777777766666554
No 306
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.53 E-value=17 Score=42.32 Aligned_cols=51 Identities=25% Similarity=0.189 Sum_probs=32.9
Q ss_pred CCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhc-CCcHHHHHHHHHHHHcCCc
Q 001763 913 RDDIRGRLAAKKLIELEPENPSPYVQLSNIYAAL-GNWNEVNTLRREMREKGVK 965 (1017)
Q Consensus 913 g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~~~~~ 965 (1017)
.+.+.|...++++-+.+ ++.+...++..|.-. ++++.+.-.+..+.+.|.+
T Consensus 378 r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYE 429 (552)
T ss_pred CCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhh
Confidence 46677777777777776 455555666555543 7777777766666666554
No 307
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=86.83 E-value=0.56 Score=29.96 Aligned_cols=28 Identities=18% Similarity=0.395 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHHc
Q 001763 935 PYVQLSNIYAALGNWNEVNTLRREMREK 962 (1017)
Q Consensus 935 ~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 962 (1017)
+++.+|.+|.+.|++++|.+.++++.++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5788999999999999999999988764
No 308
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.76 E-value=2.6 Score=40.36 Aligned_cols=52 Identities=23% Similarity=0.254 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhhCC----CCCchHHHHHHHHHhcCCcHHH
Q 001763 901 IWTTLLGACGVHRDDIRGRLAAKKLIELEP----ENPSPYVQLSNIYAALGNWNEV 952 (1017)
Q Consensus 901 ~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p----~~~~~~~~l~~~y~~~g~~~~a 952 (1017)
.....++.++...|.++++..+-+++++.+ -|+..+..|+.+|.+.|+++.|
T Consensus 142 elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 142 ELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344445556678899999999999999854 3688999999999999999887
No 309
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=86.71 E-value=3.5 Score=38.63 Aligned_cols=61 Identities=16% Similarity=0.233 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCc-----------HHHHHHHHHHhhhhcCCCcCchhHHHHHHhh
Q 001763 812 AEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGR-----------VSEGRQIFETMVSCHGIQPRVDHCACMVDLL 877 (1017)
Q Consensus 812 ~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~-----------~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l 877 (1017)
+++|+.=|++.+. ++|+. .++..+.++|...+. +++|...|++... .+|+.+.|..-..+.
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~---~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD---EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH---H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh---cCCCcHHHHHHHHHH
Confidence 4567777777777 67876 678788887765433 4455555555544 678878777655543
No 310
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=86.69 E-value=1.3e+02 Score=40.36 Aligned_cols=63 Identities=13% Similarity=0.083 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCC
Q 001763 900 RIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGV 964 (1017)
Q Consensus 900 ~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 964 (1017)
.+|..+...++..|.++.|..+.-++.+.. -+.++.-.|......|+...|..+.+...+...
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 489999999999999999999998888887 478999999999999999999999987776433
No 311
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.49 E-value=0.75 Score=27.62 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=20.3
Q ss_pred chHHHHHHHHHhcCCcHHHHHHHH
Q 001763 934 SPYVQLSNIYAALGNWNEVNTLRR 957 (1017)
Q Consensus 934 ~~~~~l~~~y~~~g~~~~a~~~~~ 957 (1017)
.++..|+.+|...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467889999999999999988765
No 312
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=86.14 E-value=3.2 Score=38.82 Aligned_cols=15 Identities=13% Similarity=0.220 Sum_probs=6.8
Q ss_pred hHHHHHHHHHHhhCC
Q 001763 916 IRGRLAAKKLIELEP 930 (1017)
Q Consensus 916 ~~a~~~~~~~l~~~p 930 (1017)
++|...|+++.+.+|
T Consensus 97 ~kA~~~FqkAv~~~P 111 (186)
T PF06552_consen 97 EKATEYFQKAVDEDP 111 (186)
T ss_dssp HHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHhcCC
Confidence 444444444555555
No 313
>PRK09687 putative lyase; Provisional
Probab=86.08 E-value=47 Score=34.68 Aligned_cols=73 Identities=8% Similarity=-0.031 Sum_probs=41.6
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHhcCCCCCchhHHHHHHHHhhCCchHHHHHHHHHHHcCCCCChHHHHHHHHhc
Q 001763 560 NIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNVEDAVVLYRGMQTEGLSPNDITFTSLLDAC 636 (1017)
Q Consensus 560 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 636 (1017)
+..+....+.++++.|+..-.-.+++.+..++ + .-..+.++..-|..+|+..+.++... .||...-...+.+|
T Consensus 205 ~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~-~-~~~a~~ALg~ig~~~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDKRVLSVLIKELKKGT-V-GDLIIEAAGELGDKTLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHcCCc-h-HHHHHHHHHhcCCHhHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 66667777777777777433333333333333 2 33456667777777788877777763 23544444444443
No 314
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=86.03 E-value=2.1 Score=31.16 Aligned_cols=35 Identities=20% Similarity=0.140 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHH
Q 001763 904 TLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQ 938 (1017)
Q Consensus 904 ~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~ 938 (1017)
.+.-++.+.|+++.|....+.+++.+|+|..+..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 35566789999999999999999999987665443
No 315
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.99 E-value=13 Score=33.72 Aligned_cols=55 Identities=7% Similarity=-0.086 Sum_probs=39.8
Q ss_pred hccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCCh
Q 001763 740 AVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNY 795 (1017)
Q Consensus 740 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~ 795 (1017)
...++.+++..+++.+.-..|+ ....-..-+-.+...|+|++|..+|+++.+...
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 3477788888888877766665 444555556667788899999999988887543
No 316
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.67 E-value=38 Score=37.04 Aligned_cols=54 Identities=9% Similarity=-0.022 Sum_probs=39.3
Q ss_pred HhHHHhcCCHHHHHHHHHhccC---CChh--------HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 001763 771 IDMYAKCGDVKRSAQVFDEMAE---RNYV--------ISWNSMIVGFAKNGYAEDALKVFHEMKE 824 (1017)
Q Consensus 771 ~~~y~~~g~~~~A~~~~~~~~~---~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 824 (1017)
...+.-.|++.+|.+++...-. ++.. ..||.|...+.+-|.+..+..+|.+.++
T Consensus 247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~ 311 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALR 311 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHH
Confidence 4566778999999998875532 3311 2478888888888888888888887764
No 317
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.31 E-value=17 Score=34.75 Aligned_cols=90 Identities=11% Similarity=0.096 Sum_probs=48.1
Q ss_pred HHHhccCcHHHHHHHHHHHHHhCCC--CCcchHhHHHhHHHhcCCHHHHHHHHHhccCCChhHHH-HHHHHHHHhCCCHH
Q 001763 737 RACAVLSSLRDGGEIHSLIFHTGYD--LDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISW-NSMIVGFAKNGYAE 813 (1017)
Q Consensus 737 ~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~ 813 (1017)
......+++++|...++..+..--+ ....+--.|..+....|.+|+|...++....++..... ..-...+...|+.+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchH
Confidence 3455566666666666655432111 11122234555566666666666666666665554111 22344566666666
Q ss_pred HHHHHHHHHHHCC
Q 001763 814 DALKVFHEMKETQ 826 (1017)
Q Consensus 814 ~A~~~~~~m~~~g 826 (1017)
+|..-|++.++.+
T Consensus 177 ~Ar~ay~kAl~~~ 189 (207)
T COG2976 177 EARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHcc
Confidence 6666666666643
No 318
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.86 E-value=5.2 Score=36.19 Aligned_cols=52 Identities=19% Similarity=0.191 Sum_probs=31.5
Q ss_pred cCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcC
Q 001763 912 HRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKG 963 (1017)
Q Consensus 912 ~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 963 (1017)
.++.++++.+...+--+.|+.++.-..-++++...|+|+||..+++.+.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 4555566666555555666666666666666666666666666665555544
No 319
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=84.41 E-value=25 Score=37.00 Aligned_cols=63 Identities=11% Similarity=0.257 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHCCCCCCh-HhH-HHHHHHcccCCc--HHHHHHHHHHhhhhcCCCcCchhHHHHHHh
Q 001763 813 EDALKVFHEMKETQAMPDD-VTF-LGVLTACSHAGR--VSEGRQIFETMVSCHGIQPRVDHCACMVDL 876 (1017)
Q Consensus 813 ~~A~~~~~~m~~~g~~p~~-~~~-~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 876 (1017)
++.+..|+.+.+.|+..+. .-+ ..++..+..... +..+.++++.+.+ .|+++...||..++-+
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~-~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKK-NGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHH-cCCccccccccHHHHH
Confidence 5677888888888887755 333 334443332222 5578888888887 6999999998877543
No 320
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=83.57 E-value=7.5 Score=39.89 Aligned_cols=70 Identities=19% Similarity=0.331 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-ChHhHHHHHHHcccCCcHHHHHHHHHHhhh----hcCCCcCchh
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMP-DDVTFLGVLTACSHAGRVSEGRQIFETMVS----CHGIQPRVDH 869 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~ 869 (1017)
+...++..+...|+++.+.+.++++.. ..| |...|..++.+|...|+...|+..|+.+.+ +.|+.|..+.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~--~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~ 229 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIE--LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPEL 229 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHH
Confidence 555666666677777777777777766 344 446666677777777777777777666644 2344444443
No 321
>PRK10941 hypothetical protein; Provisional
Probab=83.48 E-value=6.7 Score=40.34 Aligned_cols=81 Identities=20% Similarity=0.169 Sum_probs=63.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCCccCCceeEEEECCEEEE
Q 001763 902 WTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVKKFPGCSWIVLGQNTNF 981 (1017)
Q Consensus 902 ~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~g~s~i~~~~~~~~ 981 (1017)
.++|-.++...++++.|....+.++.++|+++.-+--.|-+|.+.|.+..|..-++.-.+....
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~---------------- 247 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE---------------- 247 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC----------------
Confidence 3455577888999999999999999999999988888999999999999999888766655432
Q ss_pred EecCCCCCCChHHHHHHHHHHHHH
Q 001763 982 FVAGDTSHPNADRICAVLEDLTAS 1005 (1017)
Q Consensus 982 f~~~d~~~~~~~~~~~~l~~l~~~ 1005 (1017)
-|.+..|-..++.|.++
T Consensus 248 -------dp~a~~ik~ql~~l~~~ 264 (269)
T PRK10941 248 -------DPISEMIRAQIHSIEQK 264 (269)
T ss_pred -------chhHHHHHHHHHHHhhc
Confidence 36666666666666554
No 322
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=83.47 E-value=1.7 Score=27.94 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKE 824 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 824 (1017)
+|..+...|...|++++|++.|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566777777777777777777777776
No 323
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=83.44 E-value=2 Score=27.22 Aligned_cols=31 Identities=16% Similarity=-0.004 Sum_probs=25.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhhCCCC
Q 001763 902 WTTLLGACGVHRDDIRGRLAAKKLIELEPEN 932 (1017)
Q Consensus 902 ~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~ 932 (1017)
+..++.++...|+.+.|...++++++..|++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 3456667778899999999999999999963
No 324
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.38 E-value=1.7 Score=29.58 Aligned_cols=29 Identities=34% Similarity=0.392 Sum_probs=24.2
Q ss_pred chHHHHHHHHHhcCCcHHHHHHHHHHHHc
Q 001763 934 SPYVQLSNIYAALGNWNEVNTLRREMREK 962 (1017)
Q Consensus 934 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 962 (1017)
.++.+||.+|...|++++|.+++++..+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46789999999999999999999888764
No 325
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=83.22 E-value=65 Score=33.92 Aligned_cols=125 Identities=12% Similarity=0.217 Sum_probs=77.9
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHHHhc--cC----CHHHHHHHHHhcCC-------CCccchHHHHHHHhccCCc
Q 001763 238 PEAAFELFEKMIKVGCVPDQVAFVTVINVCFN--LG----RLDEARELFAQMQN-------PNVVAWNVMISGHAKRGYD 304 (1017)
Q Consensus 238 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~--~g----~~~~A~~~~~~m~~-------~~~~~~~~li~~~~~~g~~ 304 (1017)
+++.+.+++.|.+.|..-+..+|.+..-.... .. ....|..+|+.|++ ++-.++..++.. ...+.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34567788999999999988887764433333 22 34568889999985 455566666654 33333
Q ss_pred ----hHHHHHHHHHHhcCCCCChh--hHHHHHHHHhcccc--hhHHHHHHHHHHHhCCCCchhhhHHH
Q 001763 305 ----AEAVNYFKRMRKAGVKSSRS--TLGSVLSGISSLAA--LDFGLIVHAEAIKQGLYSNVYVASSL 364 (1017)
Q Consensus 305 ----~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~l 364 (1017)
+.++.+|+.+.+.|...+.. ....++..+..... ...+..+++.+.+.|+......|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 56777888888877776543 23333333322222 34666777777777776655555543
No 326
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=82.76 E-value=7.6 Score=37.23 Aligned_cols=95 Identities=18% Similarity=0.128 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh--HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCch------
Q 001763 797 ISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD--VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVD------ 868 (1017)
Q Consensus 797 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~------ 868 (1017)
..|..++.-|.+.|+.++|++.|.++.+....|.. ..+..++..+...|+|..+.....++........+.+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 47889999999999999999999999997656655 3577888889999999999998888766221111111
Q ss_pred hHHHHHHhhhccCCHHHHHHHHHhC
Q 001763 869 HCACMVDLLGRWGFLKEAEEFIEQL 893 (1017)
Q Consensus 869 ~~~~l~~~l~~~g~~~eA~~~~~~~ 893 (1017)
.|..+ .+...|++.+|-+.+-+.
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHcc
Confidence 12222 234567788777776554
No 327
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=81.97 E-value=5.3 Score=40.91 Aligned_cols=54 Identities=20% Similarity=0.224 Sum_probs=25.9
Q ss_pred HHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHH
Q 001763 907 GACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMR 960 (1017)
Q Consensus 907 ~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 960 (1017)
..+...|+++.++...+.+++.+|-+-..|..|...|...|+...|+..++.++
T Consensus 161 e~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 161 EALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 333344444444444444555555444444445555555555555544444443
No 328
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.72 E-value=60 Score=32.52 Aligned_cols=221 Identities=13% Similarity=0.195 Sum_probs=129.9
Q ss_pred hhhhhhcccCCCchHHHHHHHHHHHC---CC--CcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHh-----CCCCCcchH
Q 001763 698 TAVISGHAQNDSNYEALHFYREMRSH---NV--LPDQATFVSVLRACAVLSSLRDGGEIHSLIFHT-----GYDLDEITG 767 (1017)
Q Consensus 698 ~~li~~~~~~g~~~~A~~~~~~m~~~---~~--~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~ 767 (1017)
..||..+.+.|++++-++.|++|+.- .+ .-+..+.+++++--+...+.+.-...++..++. +-..-..+-
T Consensus 69 KQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTN 148 (440)
T KOG1464|consen 69 KQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTN 148 (440)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeecc
Confidence 34666777788888888777777531 11 223456677777666666666666665533221 111223445
Q ss_pred hHHHhHHHhcCCHHHHHHHHHhccC------------CChh--HHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCChH
Q 001763 768 SALIDMYAKCGDVKRSAQVFDEMAE------------RNYV--ISWNSMIVGFAKNGYAEDALKVFHEMKETQ-AMPDDV 832 (1017)
Q Consensus 768 ~~l~~~y~~~g~~~~A~~~~~~~~~------------~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~ 832 (1017)
..|+..|...|++..-.++++++.. ++.. ..|..-|..|..+.+-.+-..+|++.+... --|..
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP- 227 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP- 227 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch-
Confidence 5788899888888888888776642 1111 245556777877777777778888876521 12332
Q ss_pred hHHHHHHHc-----ccCCcHHHHHHHHHHhhhhcCCCcCch-----hHHHHHHhhhccCC--H--HHHHHHHHhCCC--C
Q 001763 833 TFLGVLTAC-----SHAGRVSEGRQIFETMVSCHGIQPRVD-----HCACMVDLLGRWGF--L--KEAEEFIEQLTF--E 896 (1017)
Q Consensus 833 ~~~~l~~~~-----~~~g~~~~a~~~~~~m~~~~~~~p~~~-----~~~~l~~~l~~~g~--~--~eA~~~~~~~~~--~ 896 (1017)
...+++.-| .+.|.|++|-.-|-..-+.|.-.-++. -|-.+.+++.+.|- + .|| -|. .
T Consensus 228 lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEA------KPyKNd 301 (440)
T KOG1464|consen 228 LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEA------KPYKND 301 (440)
T ss_pred HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCccccc------CCCCCC
Confidence 334555555 467999998776666555454322222 24455666666652 1 111 132 3
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCC
Q 001763 897 PDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEP 930 (1017)
Q Consensus 897 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p 930 (1017)
|.......|..+|+. ++ +..|+++++.+.
T Consensus 302 PEIlAMTnlv~aYQ~-Nd----I~eFE~Il~~~~ 330 (440)
T KOG1464|consen 302 PEILAMTNLVAAYQN-ND----IIEFERILKSNR 330 (440)
T ss_pred HHHHHHHHHHHHHhc-cc----HHHHHHHHHhhh
Confidence 445567788888854 33 334666666544
No 329
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=81.70 E-value=32 Score=37.51 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCC----CCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCCc
Q 001763 898 DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEP----ENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVK 965 (1017)
Q Consensus 898 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p----~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 965 (1017)
...+|..+...|+++|.++.|..++.++.+.++ ..+...+.-+.+....|+..+|....+...+....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~ 216 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLS 216 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 345788899999999999999999999998763 25677888899999999999999988777764343
No 330
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=81.23 E-value=49 Score=31.14 Aligned_cols=40 Identities=10% Similarity=0.243 Sum_probs=28.5
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHH
Q 001763 242 FELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEARELFA 281 (1017)
Q Consensus 242 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 281 (1017)
++++..+.+.|++|+...|..+++.+.+.|++.....++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq 53 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ 53 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 3455566677888888888888888888887766555443
No 331
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.62 E-value=1.2 Score=45.95 Aligned_cols=86 Identities=12% Similarity=-0.027 Sum_probs=43.0
Q ss_pred cCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCchHHHH
Q 001763 843 HAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL-TFEPDSR-IWTTLLGACGVHRDDIRGRL 920 (1017)
Q Consensus 843 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~ 920 (1017)
..|.+++|++.|...++ -.+|....|..-..++.+.++...|++-+... .++||.. -|..-..+-+..|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 35666666666666655 12223334444455555555555555444432 3444443 33333344444555555555
Q ss_pred HHHHHHhhCC
Q 001763 921 AAKKLIELEP 930 (1017)
Q Consensus 921 ~~~~~l~~~p 930 (1017)
.++.+.+++-
T Consensus 204 dl~~a~kld~ 213 (377)
T KOG1308|consen 204 DLALACKLDY 213 (377)
T ss_pred HHHHHHhccc
Confidence 5555555543
No 332
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=80.62 E-value=2.3 Score=26.25 Aligned_cols=29 Identities=24% Similarity=0.052 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhhCC
Q 001763 902 WTTLLGACGVHRDDIRGRLAAKKLIELEP 930 (1017)
Q Consensus 902 ~~~ll~~~~~~g~~~~a~~~~~~~l~~~p 930 (1017)
|..++..+...|+++.|+..++++++.+|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 44444445555555555555555555555
No 333
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=80.53 E-value=4.7 Score=39.43 Aligned_cols=47 Identities=9% Similarity=0.070 Sum_probs=22.6
Q ss_pred CCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHH
Q 001763 913 RDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREM 959 (1017)
Q Consensus 913 g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 959 (1017)
.+++....--+++++++|+..-+++.|++.......+++|+....+.
T Consensus 58 ~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 58 KHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred hhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 34444444444445555544444445555544444555544444443
No 334
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=79.86 E-value=3.5 Score=34.20 Aligned_cols=44 Identities=16% Similarity=0.230 Sum_probs=29.9
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHc
Q 001763 919 RLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREK 962 (1017)
Q Consensus 919 ~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 962 (1017)
...+++.++.+|+|..+.+.|+..|...|++++|.+.+-.+..+
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 44566777777777777777777777777777777766665544
No 335
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.30 E-value=30 Score=33.58 Aligned_cols=122 Identities=11% Similarity=0.095 Sum_probs=79.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcC----chhHHHHH
Q 001763 800 NSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPR----VDHCACMV 874 (1017)
Q Consensus 800 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~ 874 (1017)
+.-+..+.+.+...+|+.+.++-.+. +|.. .+-..+...++-.|+|++|..-++.+.. +.|+ ...|..++
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~---l~p~~t~~a~lyr~li 79 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT---LSPQDTVGASLYRHLI 79 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhh---cCcccchHHHHHHHHH
Confidence 44566778889999999999888884 5654 5566778889999999999988887765 4454 44565555
Q ss_pred HhhhccCCHHHHHHH-HHh--CCCCC--CHHHHHHHH-HH--HHhcCCchHHHHHHHHHHhhCCCCC
Q 001763 875 DLLGRWGFLKEAEEF-IEQ--LTFEP--DSRIWTTLL-GA--CGVHRDDIRGRLAAKKLIELEPENP 933 (1017)
Q Consensus 875 ~~l~~~g~~~eA~~~-~~~--~~~~p--~~~~~~~ll-~~--~~~~g~~~~a~~~~~~~l~~~p~~~ 933 (1017)
.+ +.+..- |.. .|.-+ .+..|-..+ .+ |...|.-+.....-+++++-.|..+
T Consensus 80 r~-------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~i 139 (273)
T COG4455 80 RC-------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPI 139 (273)
T ss_pred HH-------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCC
Confidence 43 223322 221 23111 334666554 33 4444556667777888888888543
No 336
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=79.29 E-value=1.1e+02 Score=34.01 Aligned_cols=155 Identities=12% Similarity=0.147 Sum_probs=98.9
Q ss_pred hhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhc
Q 001763 698 TAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKC 777 (1017)
Q Consensus 698 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~ 777 (1017)
-+++..+.++-...-...+..+|+.- .-+...+..++..|... .-+.-..+++++.+..+. |+..-..|++.|.+
T Consensus 70 ~~~~~~f~~n~k~~~veh~c~~~l~~--~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yEk- 144 (711)
T COG1747 70 VTLLTIFGDNHKNQIVEHLCTRVLEY--GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYEK- 144 (711)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHHH-
Confidence 34445555555555555566666653 34556667777777666 455666777777788776 77777888888887
Q ss_pred CCHHHHHHHHHhccC--------CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCChHhHHHHHHHcccCCcHH
Q 001763 778 GDVKRSAQVFDEMAE--------RNYVISWNSMIVGFAKNGYAEDALKVFHEMKET-QAMPDDVTFLGVLTACSHAGRVS 848 (1017)
Q Consensus 778 g~~~~A~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~ 848 (1017)
++.+.+...|.++.. .++...|..+... -..+.+.-+.+..++... |..--.+.+--+-.-|+...+|+
T Consensus 145 ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~ 222 (711)
T COG1747 145 IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWT 222 (711)
T ss_pred hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHH
Confidence 888888888876643 1222356665542 124556666666666553 22222344555556788889999
Q ss_pred HHHHHHHHhhh
Q 001763 849 EGRQIFETMVS 859 (1017)
Q Consensus 849 ~a~~~~~~m~~ 859 (1017)
+|+++...+++
T Consensus 223 eai~Ilk~il~ 233 (711)
T COG1747 223 EAIRILKHILE 233 (711)
T ss_pred HHHHHHHHHhh
Confidence 99998888776
No 337
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=78.95 E-value=4.3 Score=27.48 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKE 824 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 824 (1017)
+++.++..|...|++++|+.++++.++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 566677777777777777777776654
No 338
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=78.50 E-value=91 Score=32.61 Aligned_cols=19 Identities=16% Similarity=0.181 Sum_probs=13.6
Q ss_pred HHcCChhHHHHHHHHHHHc
Q 001763 233 VQAGLPEAAFELFEKMIKV 251 (1017)
Q Consensus 233 ~~~g~~~~A~~~~~~m~~~ 251 (1017)
.+.|+.+.|..++.+....
T Consensus 4 ~~~~~~~~A~~~~~K~~~~ 22 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDL 22 (278)
T ss_pred hhhCCHHHHHHHHHHhhhH
Confidence 4567788888888777654
No 339
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.47 E-value=28 Score=35.36 Aligned_cols=55 Identities=15% Similarity=0.029 Sum_probs=50.4
Q ss_pred HHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 001763 907 GACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMRE 961 (1017)
Q Consensus 907 ~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 961 (1017)
.+|...|.+.+|...-++++.++|-+...+..|.++|+..|+.-.|.+-++++.+
T Consensus 287 ~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4577899999999999999999999999999999999999999899888887764
No 340
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.36 E-value=19 Score=40.34 Aligned_cols=148 Identities=16% Similarity=0.047 Sum_probs=91.5
Q ss_pred hcCCHHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHH
Q 001763 776 KCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFE 855 (1017)
Q Consensus 776 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 855 (1017)
-.|+++.|..++..++++ ..+.++.-+.++|-.++|+++. ..||. -|... .+.|+++.|.++..
T Consensus 598 mrrd~~~a~~vLp~I~k~----~rt~va~Fle~~g~~e~AL~~s-------~D~d~-rFela----l~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE----IRTKVAHFLESQGMKEQALELS-------TDPDQ-RFELA----LKLGRLDIAFDLAV 661 (794)
T ss_pred hhccccccccccccCchh----hhhhHHhHhhhccchHhhhhcC-------CChhh-hhhhh----hhcCcHHHHHHHHH
Confidence 347777887777776632 2245566666777777776542 22332 23222 35788888877655
Q ss_pred HhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCch
Q 001763 856 TMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSP 935 (1017)
Q Consensus 856 ~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~ 935 (1017)
+. .+..-|..|.++...+|++..|.+.+.+.. -|..|+-.+-..|+-+.-..+...+-+-.-.|.
T Consensus 662 e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~-- 726 (794)
T KOG0276|consen 662 EA-------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNL-- 726 (794)
T ss_pred hh-------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccch--
Confidence 43 234568888888888899888888887644 356666666666776543343333333322222
Q ss_pred HHHHHHHHHhcCCcHHHHHHHH
Q 001763 936 YVQLSNIYAALGNWNEVNTLRR 957 (1017)
Q Consensus 936 ~~~l~~~y~~~g~~~~a~~~~~ 957 (1017)
--..|...|+.++..++..
T Consensus 727 ---AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 727 ---AFLAYFLSGDYEECLELLI 745 (794)
T ss_pred ---HHHHHHHcCCHHHHHHHHH
Confidence 2246778888888888764
No 341
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.69 E-value=1e+02 Score=33.93 Aligned_cols=176 Identities=11% Similarity=0.073 Sum_probs=106.9
Q ss_pred HHHHHHHHhccCCC-hhH--------HHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCC--h-----HhHHHHHHH-cc
Q 001763 781 KRSAQVFDEMAERN-YVI--------SWNSMIVGFAKNGYAEDALKVFHEMKET-QAMPD--D-----VTFLGVLTA-CS 842 (1017)
Q Consensus 781 ~~A~~~~~~~~~~~-~~~--------~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~--~-----~~~~~l~~~-~~ 842 (1017)
|+|+...++.+..+ ... ....++.+-.-.|++.+|++-...|.+- .-.|. . .-...++.. |.
T Consensus 299 De~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~ 378 (629)
T KOG2300|consen 299 DEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSH 378 (629)
T ss_pred HHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhh
Confidence 45555555555544 221 2233444455779999999888888762 11233 1 111234444 45
Q ss_pred cCCcHHHHHHHHHHhhhhcCCCcCchh--HHHHHHhhhccCCHHHHHHHHHhCCCC-CCH---HHHH-H--HHHH--HHh
Q 001763 843 HAGRVSEGRQIFETMVSCHGIQPRVDH--CACMVDLLGRWGFLKEAEEFIEQLTFE-PDS---RIWT-T--LLGA--CGV 911 (1017)
Q Consensus 843 ~~g~~~~a~~~~~~m~~~~~~~p~~~~--~~~l~~~l~~~g~~~eA~~~~~~~~~~-p~~---~~~~-~--ll~~--~~~ 911 (1017)
.-|.++.|...|....+. --..+... -.++...|.|.|+-++-.++.+.+.-. .++ .... + ++.+ ...
T Consensus 379 sv~~~enAe~hf~~a~k~-t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~ 457 (629)
T KOG2300|consen 379 SVNCYENAEFHFIEATKL-TESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFK 457 (629)
T ss_pred hcchHHHHHHHHHHHHHh-hhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 678899999998887762 11222222 345567789988888777777776411 111 1111 1 1111 336
Q ss_pred cCCchHHHHHHHHHHhhCC------CCCchHHHHHHHHHhcCCcHHHHHHHH
Q 001763 912 HRDDIRGRLAAKKLIELEP------ENPSPYVQLSNIYAALGNWNEVNTLRR 957 (1017)
Q Consensus 912 ~g~~~~a~~~~~~~l~~~p------~~~~~~~~l~~~y~~~g~~~~a~~~~~ 957 (1017)
+|++.+|+....+.++..- -.+-.++.|+++....|+..++.++-+
T Consensus 458 qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvr 509 (629)
T KOG2300|consen 458 QNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVR 509 (629)
T ss_pred hccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccc
Confidence 7999999999999888742 124467889999999999999876543
No 342
>PRK09687 putative lyase; Provisional
Probab=76.20 E-value=1e+02 Score=32.13 Aligned_cols=81 Identities=10% Similarity=-0.092 Sum_probs=32.0
Q ss_pred CCcchHHHHHHHHHcCCCchhHHHhhhcCCCCCcchHHHHHHHHHHcC-ChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 001763 189 SSSFCKGALIDMYAKLNNVSDARRVFDGAVDLDTVSWTSMIAGYVQAG-LPEAAFELFEKMIKVGCVPDQVAFVTVINVC 267 (1017)
Q Consensus 189 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 267 (1017)
++..+.-..+.++++.|+.+....+..-...+|...-...+.++.+.+ +...+...+..+.. .++...-...+.++
T Consensus 140 ~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aL 216 (280)
T PRK09687 140 KSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGL 216 (280)
T ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHH
Confidence 344455555555555554322222222233333333333333333332 12234444444332 23444444444444
Q ss_pred hccCC
Q 001763 268 FNLGR 272 (1017)
Q Consensus 268 ~~~g~ 272 (1017)
.+.|+
T Consensus 217 g~~~~ 221 (280)
T PRK09687 217 ALRKD 221 (280)
T ss_pred HccCC
Confidence 44444
No 343
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=75.97 E-value=4.3 Score=24.29 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=14.0
Q ss_pred HhHHHhHHHhcCCHHHHHHHHH
Q 001763 767 GSALIDMYAKCGDVKRSAQVFD 788 (1017)
Q Consensus 767 ~~~l~~~y~~~g~~~~A~~~~~ 788 (1017)
...+..++...|++++|+.+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4456666666777777766654
No 344
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.84 E-value=70 Score=29.96 Aligned_cols=89 Identities=17% Similarity=0.161 Sum_probs=44.0
Q ss_pred HhHHHhcCCHHHHHHHHHhccCCChhH-HH-----HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHccc
Q 001763 771 IDMYAKCGDVKRSAQVFDEMAERNYVI-SW-----NSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSH 843 (1017)
Q Consensus 771 ~~~y~~~g~~~~A~~~~~~~~~~~~~~-~~-----~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~ 843 (1017)
..+....|+-.+|...|+++.....++ .. ---.-.+..+|-+++.....+.+-..+ +|-. ..--.|.-+-.+
T Consensus 101 at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~-n~mR~sArEALglAa~k 179 (221)
T COG4649 101 ATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDG-NPMRHSAREALGLAAYK 179 (221)
T ss_pred HHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCC-ChhHHHHHHHHhHHHHh
Confidence 344555566666666666554421110 00 111223445666666665555544332 2222 223445555566
Q ss_pred CCcHHHHHHHHHHhhhh
Q 001763 844 AGRVSEGRQIFETMVSC 860 (1017)
Q Consensus 844 ~g~~~~a~~~~~~m~~~ 860 (1017)
.|++.+|...|+.+..+
T Consensus 180 agd~a~A~~~F~qia~D 196 (221)
T COG4649 180 AGDFAKAKSWFVQIAND 196 (221)
T ss_pred ccchHHHHHHHHHHHcc
Confidence 77777777777776653
No 345
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=75.30 E-value=17 Score=35.98 Aligned_cols=64 Identities=13% Similarity=0.066 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhcCCchH-------HHHHHHHHHhhCC------CCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCC
Q 001763 901 IWTTLLGACGVHRDDIR-------GRLAAKKLIELEP------ENPSPYVQLSNIYAALGNWNEVNTLRREMREKGV 964 (1017)
Q Consensus 901 ~~~~ll~~~~~~g~~~~-------a~~~~~~~l~~~p------~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 964 (1017)
++.-+.|.|+..|+.+. |...|+++++.+. +.....+.+|.++.+.|++++|.+.+.++...+-
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 45556677887777544 4455555555443 2245788899999999999999999998876533
No 346
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=74.95 E-value=1.2e+02 Score=32.04 Aligned_cols=20 Identities=20% Similarity=0.129 Sum_probs=12.4
Q ss_pred cccCCCchHHHHHHHHHHHC
Q 001763 704 HAQNDSNYEALHFYREMRSH 723 (1017)
Q Consensus 704 ~~~~g~~~~A~~~~~~m~~~ 723 (1017)
....+.+..|...+......
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~ 70 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAEL 70 (292)
T ss_pred ccccccHHHHHHHHHHhhhc
Confidence 34556667777777766553
No 347
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=74.83 E-value=58 Score=33.58 Aligned_cols=82 Identities=12% Similarity=0.146 Sum_probs=43.4
Q ss_pred CCcchHhHHHhHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHH-HHHHH
Q 001763 762 LDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFL-GVLTA 840 (1017)
Q Consensus 762 ~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~l~~~ 840 (1017)
-|+..+..++..|.+.|++.+|+..|-.-..+... .+..++.-.... |...+...|. -.+--
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~-~~~~ll~~~~~~----------------~~~~e~dlfi~RaVL~ 150 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAF-AYVMLLEEWSTK----------------GYPSEADLFIARAVLQ 150 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHH-HHHHHHHHHHHH----------------TSS--HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHH-HHHHHHHHHHHh----------------cCCcchhHHHHHHHHH
Confidence 47788889999999999999998887543322222 111122211111 2211222221 12223
Q ss_pred cccCCcHHHHHHHHHHhhhh
Q 001763 841 CSHAGRVSEGRQIFETMVSC 860 (1017)
Q Consensus 841 ~~~~g~~~~a~~~~~~m~~~ 860 (1017)
|...|+...|...++...+.
T Consensus 151 yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 151 YLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHTTBHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHH
Confidence 56678888888888777663
No 348
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=73.66 E-value=5.5 Score=31.47 Aligned_cols=47 Identities=13% Similarity=0.199 Sum_probs=27.9
Q ss_pred cCCcHHHHHHHHHHhhhhcCCCcC-chhHHHHHHhhhccCCHHHHHHH
Q 001763 843 HAGRVSEGRQIFETMVSCHGIQPR-VDHCACMVDLLGRWGFLKEAEEF 889 (1017)
Q Consensus 843 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~l~~~g~~~eA~~~ 889 (1017)
++...++|+..+++.++...-.|+ ...+++++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666653322222 23456666777777777776665
No 349
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=73.59 E-value=1.6e+02 Score=32.90 Aligned_cols=94 Identities=12% Similarity=0.124 Sum_probs=48.3
Q ss_pred CcchHhHHHhHHHhcCCHHHHHHHHHhccCCCh-hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHc
Q 001763 763 DEITGSALIDMYAKCGDVKRSAQVFDEMAERNY-VISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTAC 841 (1017)
Q Consensus 763 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 841 (1017)
|.....++++.++..-++.-.+.+..+|..-+. ...+..++.+|.+. ..++-..+++++.+. .-|.+.+..-+..+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHHHH
Confidence 444455555566555555555555555554211 12555666666655 344555666666653 23333333333333
Q ss_pred ccCCcHHHHHHHHHHhhh
Q 001763 842 SHAGRVSEGRQIFETMVS 859 (1017)
Q Consensus 842 ~~~g~~~~a~~~~~~m~~ 859 (1017)
...++-+.+..+|.++..
T Consensus 142 yEkik~sk~a~~f~Ka~y 159 (711)
T COG1747 142 YEKIKKSKAAEFFGKALY 159 (711)
T ss_pred HHHhchhhHHHHHHHHHH
Confidence 334666666666666543
No 350
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=73.20 E-value=44 Score=36.38 Aligned_cols=117 Identities=15% Similarity=0.143 Sum_probs=61.8
Q ss_pred CcchHhHHHhHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHH---HHhCCCHHHHHHHHHHHHHCCCCC-ChHhHHH--
Q 001763 763 DEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVG---FAKNGYAEDALKVFHEMKETQAMP-DDVTFLG-- 836 (1017)
Q Consensus 763 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~-- 836 (1017)
.+.++..+.+++..+|+.+.|.+++++..---.. +|...... -...|+.. +.- ..| |..-|.+
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~-~~~~~F~~~~~~~~~g~~r---------L~~-~~~eNR~fflal~ 107 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFER-AFHPSFSPFRSNLTSGNCR---------LDY-RRPENRQFFLALF 107 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-HHHHHhhhhhcccccCccc---------cCC-ccccchHHHHHHH
Confidence 6677777888888889888888888765421111 11111100 00111100 000 012 2222322
Q ss_pred -HHHHcccCCcHHHHHHHHHHhhhhcCCCcCch--hHHHHHHhh-hccCCHHHHHHHHHhC
Q 001763 837 -VLTACSHAGRVSEGRQIFETMVSCHGIQPRVD--HCACMVDLL-GRWGFLKEAEEFIEQL 893 (1017)
Q Consensus 837 -l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~--~~~~l~~~l-~~~g~~~eA~~~~~~~ 893 (1017)
.+....+.|-+.-|.++.+.+.. +.|+.+ +...++|-| .|+++++--+++++..
T Consensus 108 r~i~~L~~RG~~rTAlE~~KlLls---Ldp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 108 RYIQSLGRRGCWRTALEWCKLLLS---LDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHh---cCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 34456677777777777777655 555533 334446655 5667777666666654
No 351
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=72.28 E-value=11 Score=40.71 Aligned_cols=53 Identities=25% Similarity=0.263 Sum_probs=26.5
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhh
Q 001763 806 FAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVS 859 (1017)
Q Consensus 806 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 859 (1017)
+...|+++.++......... +-....+.-.++...-..|+|++|...-+.|+.
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~ 385 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLS 385 (831)
T ss_pred HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 34456666665555443331 112224444555555555666666665555544
No 352
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=71.94 E-value=83 Score=36.52 Aligned_cols=99 Identities=22% Similarity=0.331 Sum_probs=59.5
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCChH---hHHHHHHHcccCCcH-HHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccC
Q 001763 806 FAKNGYAEDALKVFHEMKETQAMPDDV---TFLGVLTACSHAGRV-SEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWG 881 (1017)
Q Consensus 806 ~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~l~~~~~~~g~~-~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g 881 (1017)
|...+..+.|++.|++.-+ +.|... .+..|+.+ +|.. +...++-.- | -.+-.+++|.|
T Consensus 297 ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~a---aG~~Fens~Elq~I-----g--------mkLn~LlgrKG 358 (1226)
T KOG4279|consen 297 YTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRA---AGEHFENSLELQQI-----G--------MKLNSLLGRKG 358 (1226)
T ss_pred CcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHH---hhhhccchHHHHHH-----H--------HHHHHHhhccc
Confidence 4444556677888888777 567653 23333322 3321 111111111 1 12445678888
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC
Q 001763 882 FLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPEN 932 (1017)
Q Consensus 882 ~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~ 932 (1017)
.++.-.++++- ..++++....+|+.+|+.++++++++.|..
T Consensus 359 ~leklq~YWdV----------~~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 359 ALEKLQEYWDV----------ATYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred hHHHHHHHHhH----------HHhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 88877666642 235566667789999999999999998853
No 353
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=71.71 E-value=36 Score=30.34 Aligned_cols=70 Identities=17% Similarity=0.072 Sum_probs=37.7
Q ss_pred CcCchhHHHHHHhhhccCCHHHH---HHHHHhC-C-CCCCHH--HHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCC
Q 001763 864 QPRVDHCACMVDLLGRWGFLKEA---EEFIEQL-T-FEPDSR--IWTTLLGACGVHRDDIRGRLAAKKLIELEPENP 933 (1017)
Q Consensus 864 ~p~~~~~~~l~~~l~~~g~~~eA---~~~~~~~-~-~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~ 933 (1017)
.+..++--.+..++.+..+.++. +.++++. + -.|+.. ....|.-+|++.++++.+....+.+++.+|+|.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 45555555666666666654433 3444443 2 223221 222333456666777777777777777777544
No 354
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=71.45 E-value=12 Score=41.52 Aligned_cols=100 Identities=14% Similarity=0.128 Sum_probs=65.0
Q ss_pred ccCCcHHHHHHHHHHhhhhcCCCcCc--hhHHHHHHhhhccCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCchH
Q 001763 842 SHAGRVSEGRQIFETMVSCHGIQPRV--DHCACMVDLLGRWGFLKEAEEFIEQL-T-FEPDSRIWTTLLGACGVHRDDIR 917 (1017)
Q Consensus 842 ~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~l~~~l~~~g~~~eA~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~ 917 (1017)
...|+...|.+.+..... ..|.. .....+..++.+.|...+|-.++.+. . ....+.+...+++++....|++.
T Consensus 618 r~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 445666666666665533 33422 22344555566666666666665442 2 22344566777788888889999
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHH
Q 001763 918 GRLAAKKLIELEPENPSPYVQLSNIYA 944 (1017)
Q Consensus 918 a~~~~~~~l~~~p~~~~~~~~l~~~y~ 944 (1017)
|++.++++++++|+++..-..|-.+-+
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999999888777665544
No 355
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=70.96 E-value=10 Score=38.44 Aligned_cols=49 Identities=10% Similarity=0.100 Sum_probs=35.8
Q ss_pred HHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHH
Q 001763 909 CGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRR 957 (1017)
Q Consensus 909 ~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 957 (1017)
.++.|+.++|...++.++.++|.++.++.-++.+.....+.-+|.+.+-
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~ 174 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYV 174 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhh
Confidence 4466777777777777777777777777777777777777777777664
No 356
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.89 E-value=40 Score=37.99 Aligned_cols=100 Identities=17% Similarity=0.086 Sum_probs=49.9
Q ss_pred HHhcCChHHHHHHHhhCCCCCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHH
Q 001763 672 YMNSKRNTDARLLFTEFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEI 751 (1017)
Q Consensus 672 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~ 751 (1017)
..+.|+++.|.++..+. .+..-|..|..+..+.|+...|.+.|.+... |.+|+-.+...|+-+.-..+
T Consensus 647 al~lgrl~iA~~la~e~---~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~l 714 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA---NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVL 714 (794)
T ss_pred hhhcCcHHHHHHHHHhh---cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHH
Confidence 34556666666655444 3345566666666666666666666665543 33444444445554433333
Q ss_pred HHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHh
Q 001763 752 HSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDE 789 (1017)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 789 (1017)
-....+.|.. |.-..+|...|++++..+++.+
T Consensus 715 a~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 715 ASLAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 3333333321 1122234444555555554443
No 357
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=69.89 E-value=1.7e+02 Score=31.88 Aligned_cols=71 Identities=17% Similarity=0.232 Sum_probs=35.7
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHH
Q 001763 735 VLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFA 807 (1017)
Q Consensus 735 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 807 (1017)
|+.-|...|++.+|.+....+----+. +..++-+++.+..+.|+-..-..+++..-..+.+ +-+.|-.+|.
T Consensus 515 LLeEY~~~GdisEA~~CikeLgmPfFh-HEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglI-T~nQMtkGf~ 585 (645)
T KOG0403|consen 515 LLEEYELSGDISEACHCIKELGMPFFH-HEVVKKALVMVMEKKGDSTMILDLLKECFKSGLI-TTNQMTKGFE 585 (645)
T ss_pred HHHHHHhccchHHHHHHHHHhCCCcch-HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCce-eHHHhhhhhh
Confidence 444455555555555544332211111 3445556666666666655555555555555555 5555555553
No 358
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=69.75 E-value=9.7 Score=41.56 Aligned_cols=84 Identities=18% Similarity=0.131 Sum_probs=59.5
Q ss_pred hhccCCHHHHHHHHHhC-CCCCCHHHHHHH-HHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHH
Q 001763 877 LGRWGFLKEAEEFIEQL-TFEPDSRIWTTL-LGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNT 954 (1017)
Q Consensus 877 l~~~g~~~eA~~~~~~~-~~~p~~~~~~~l-l~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 954 (1017)
+...+.++.|..++.+. ..+|+..+|.+. ..++.+.+++..|..-+.++++++|.....|+.-|..+.+.+++.+|..
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHH
Confidence 34455666666666654 467766544433 3566677888888888888888888888888888888888888888877
Q ss_pred HHHHHH
Q 001763 955 LRREMR 960 (1017)
Q Consensus 955 ~~~~m~ 960 (1017)
.++...
T Consensus 94 ~l~~~~ 99 (476)
T KOG0376|consen 94 DLEKVK 99 (476)
T ss_pred HHHHhh
Confidence 775433
No 359
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=69.39 E-value=14 Score=24.38 Aligned_cols=32 Identities=13% Similarity=-0.207 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCchHHHHH--HHHHHhhCCCC
Q 001763 901 IWTTLLGACGVHRDDIRGRLA--AKKLIELEPEN 932 (1017)
Q Consensus 901 ~~~~ll~~~~~~g~~~~a~~~--~~~~l~~~p~~ 932 (1017)
-|..++..+..+|++++|+.. ++-+..++|.|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 455666777788888888888 55777777654
No 360
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.17 E-value=28 Score=35.75 Aligned_cols=102 Identities=13% Similarity=0.100 Sum_probs=60.6
Q ss_pred cCCCCChhhHHHHHHHHhccCCHHHHHHHHHhcCC-CCc-----cchHHHHHHHhccCCchHHHHHHHHHHhcCCCCChh
Q 001763 251 VGCVPDQVAFVTVINVCFNLGRLDEARELFAQMQN-PNV-----VAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRS 324 (1017)
Q Consensus 251 ~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~-~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 324 (1017)
.|.+.+..+...++..-....+++.+...+-.... |+. .+-.+.+.. +-.-++++++.++..=++-|+-||.+
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl-llky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH-HHccChHHHHHHHhCcchhccccchh
Confidence 34455555555555555555666666666555543 221 111122222 22335667777777777778888888
Q ss_pred hHHHHHHHHhcccchhHHHHHHHHHHHhC
Q 001763 325 TLGSVLSGISSLAALDFGLIVHAEAIKQG 353 (1017)
Q Consensus 325 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 353 (1017)
|++.++..+.+.+++..|.++.-.++...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888777777777777776666665543
No 361
>PHA02875 ankyrin repeat protein; Provisional
Probab=69.14 E-value=84 Score=35.20 Aligned_cols=82 Identities=12% Similarity=0.116 Sum_probs=36.6
Q ss_pred HHHHHcCCCchhHHHhhhcCCCCC----cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhh--HHHHHHHHhccC
Q 001763 198 IDMYAKLNNVSDARRVFDGAVDLD----TVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVA--FVTVINVCFNLG 271 (1017)
Q Consensus 198 i~~~~~~g~~~~A~~~f~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~li~~~~~~g 271 (1017)
+...++.|+.+.+..+++.....+ ...++. +...+..|+. ++++.+.+.|..|+... -.+.+...+..|
T Consensus 72 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tp-L~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~ 146 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTP-LHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMG 146 (413)
T ss_pred HHHHHHCCCHHHHHHHHHcCCcccccccCCCCCH-HHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Confidence 334445566666555555432211 111222 2233344544 34444455565554322 123344444566
Q ss_pred CHHHHHHHHHhcC
Q 001763 272 RLDEARELFAQMQ 284 (1017)
Q Consensus 272 ~~~~A~~~~~~m~ 284 (1017)
+.+-+..+++.-.
T Consensus 147 ~~~~v~~Ll~~g~ 159 (413)
T PHA02875 147 DIKGIELLIDHKA 159 (413)
T ss_pred CHHHHHHHHhcCC
Confidence 6666655555443
No 362
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=68.35 E-value=46 Score=32.95 Aligned_cols=82 Identities=7% Similarity=-0.067 Sum_probs=58.2
Q ss_pred hcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChH-hHHHHHHHcccCCcHHHHHH
Q 001763 776 KCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDV-TFLGVLTACSHAGRVSEGRQ 852 (1017)
Q Consensus 776 ~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~ 852 (1017)
...++++|+..+.+... |....-|..-+-++.+..+++.+.+--.+.++ +.||.+ ....+..+......+++|+.
T Consensus 22 ~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHHH
Confidence 34456667776665544 44433566778888888888888888888888 678874 44556667778888888888
Q ss_pred HHHHhhh
Q 001763 853 IFETMVS 859 (1017)
Q Consensus 853 ~~~~m~~ 859 (1017)
.+++...
T Consensus 100 ~Lqra~s 106 (284)
T KOG4642|consen 100 VLQRAYS 106 (284)
T ss_pred HHHHHHH
Confidence 8887744
No 363
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=67.49 E-value=59 Score=27.24 Aligned_cols=59 Identities=14% Similarity=0.203 Sum_probs=38.1
Q ss_pred hHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhH
Q 001763 772 DMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTF 834 (1017)
Q Consensus 772 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 834 (1017)
..+...|++++|..+.+...-||.. .|.++.. .+.|..+++..-+.+|-..| .|...+|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdle-pw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLE-PWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHH-HHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 4456677788888777777777777 7765544 35566666666666666655 4544444
No 364
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=67.30 E-value=2.7e+02 Score=33.12 Aligned_cols=186 Identities=14% Similarity=0.155 Sum_probs=91.1
Q ss_pred HhcCCHHHHHHHHHhccCC-----C-----hh-HHHHHHHHHHHhCCCHHHHHHHHH--------HHHHCCCCCChHhH-
Q 001763 775 AKCGDVKRSAQVFDEMAER-----N-----YV-ISWNSMIVGFAKNGYAEDALKVFH--------EMKETQAMPDDVTF- 834 (1017)
Q Consensus 775 ~~~g~~~~A~~~~~~~~~~-----~-----~~-~~~~~l~~~~~~~g~~~~A~~~~~--------~m~~~g~~p~~~~~- 834 (1017)
+-.|++..|...++.+... + .. ..+...+-.+-..|+.+.|+..|. .....+..++...+
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 4567888888888876641 1 11 122333334455688999999997 33344433333332
Q ss_pred -HHHHHHcccCCc--HHH--HHHHHHHhhhhcCCCcCc--hhHHHH-HHhhhc--cCCHHHHHHHHH--------hCCCC
Q 001763 835 -LGVLTACSHAGR--VSE--GRQIFETMVSCHGIQPRV--DHCACM-VDLLGR--WGFLKEAEEFIE--------QLTFE 896 (1017)
Q Consensus 835 -~~l~~~~~~~g~--~~~--a~~~~~~m~~~~~~~p~~--~~~~~l-~~~l~~--~g~~~eA~~~~~--------~~~~~ 896 (1017)
.+++..+...+. .++ ..++++.+.......|+. ....++ +.++.. .-...++...+. +....
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 222333333222 222 666777665533333332 222333 333321 112234443332 21111
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCC---CCCch-H-----HHHHHHHHhcCCcHHHHHHHHHHH
Q 001763 897 PDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEP---ENPSP-Y-----VQLSNIYAALGNWNEVNTLRREMR 960 (1017)
Q Consensus 897 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p---~~~~~-~-----~~l~~~y~~~g~~~~a~~~~~~m~ 960 (1017)
--.....++++.-.-.|+..+.......+..+.. +.... + -.+.+.|...|+.++|...+.+..
T Consensus 532 ~l~~~~L~lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 532 QLLAILLNLMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 1112233444443336777665555555555433 22322 2 245567888999999999887664
No 365
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.40 E-value=55 Score=33.75 Aligned_cols=101 Identities=14% Similarity=0.174 Sum_probs=68.9
Q ss_pred CCCCchhhhHHHHHHHHccCChhHHHHHHhhcCCC-Cc-----chHHHHHHHHHhCCChhHHHHHHHhhhhcCCCCChhc
Q 001763 353 GLYSNVYVASSLINMYAKCEKMESAKKVFDSLDER-NA-----VLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFT 426 (1017)
Q Consensus 353 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 426 (1017)
|......+...++..-....+++++...+-.++.. +. .+-.+.+.. +-.-++++++.++..=.+.|+-||.+|
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl-llky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH-HHccChHHHHHHHhCcchhccccchhh
Confidence 44445556666666666677888888877766542 11 111122222 233466788888888888899999999
Q ss_pred HHHHHHhhhcccchHhhHHHHHHHHHhc
Q 001763 427 YTSILSSCACLEYLEMGRQLHAVIIKNK 454 (1017)
Q Consensus 427 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 454 (1017)
++.++..+.+.+++..|.++.-.|+...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999888888888888777666543
No 366
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=66.30 E-value=2.8e+02 Score=32.94 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=35.7
Q ss_pred CchhHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHhhcCC
Q 001763 120 DILAWNSILSMYSKRGSFENVFKSFGLLCNRGGVPNGFTFAIVLSACSKSM 170 (1017)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 170 (1017)
+.-.|- +|--+.|.|++++|.++...... ........|...++.++...
T Consensus 111 ~~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 111 GDPIWA-LIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp TEEHHH-HHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTT
T ss_pred CCccHH-HHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCC
Confidence 344675 78888999999999999855543 35666778899999997753
No 367
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.98 E-value=1.4e+02 Score=32.22 Aligned_cols=94 Identities=12% Similarity=0.104 Sum_probs=59.7
Q ss_pred chHhHHHhHHHhcCCHHHHHHHHHhccC-----CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---------CCCCC
Q 001763 765 ITGSALIDMYAKCGDVKRSAQVFDEMAE-----RNYVISWNSMIVGFAKNGYAEDALKVFHEMKET---------QAMPD 830 (1017)
Q Consensus 765 ~~~~~l~~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---------g~~p~ 830 (1017)
..+.-+.+.|..||+++.|.+.+.+... +.++..|-.++..-...|+|......-.+..+. .+.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 3456688999999999999999998654 333446666666666677777666655555442 12233
Q ss_pred hHhHHHHHHHcccCCcHHHHHHHHHHhhhh
Q 001763 831 DVTFLGVLTACSHAGRVSEGRQIFETMVSC 860 (1017)
Q Consensus 831 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 860 (1017)
..++.+|...+. +++..|.+.|-....+
T Consensus 231 l~C~agLa~L~l--kkyk~aa~~fL~~~~~ 258 (466)
T KOG0686|consen 231 LKCAAGLANLLL--KKYKSAAKYFLLAEFD 258 (466)
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHhCCCC
Confidence 344444444333 3677777777665443
No 368
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=65.68 E-value=17 Score=35.22 Aligned_cols=63 Identities=14% Similarity=0.043 Sum_probs=48.0
Q ss_pred HHHhhhccCCHHHHHHHHHh-CCCCCCH-HHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCch
Q 001763 873 MVDLLGRWGFLKEAEEFIEQ-LTFEPDS-RIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSP 935 (1017)
Q Consensus 873 l~~~l~~~g~~~eA~~~~~~-~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~ 935 (1017)
-+.-|.+.+++.||+...+. ++.+|.. ..-..|...+...|++++|....+-+-++.|++...
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~ 71 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVG 71 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchH
Confidence 35567888999999988754 5666744 455556677888999999999999999999976544
No 369
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=65.62 E-value=4.9e+02 Score=35.51 Aligned_cols=59 Identities=3% Similarity=-0.106 Sum_probs=47.4
Q ss_pred HHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCC
Q 001763 627 ITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFP 689 (1017)
Q Consensus 627 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 689 (1017)
.+|.....-+...|.++.|....-.+.+.+ -+.++.-.+......|+...|..++++..
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~r----~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l 1729 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKESR----LPEIVLERAKLLWQTGDELNALSVLQEIL 1729 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhcc----cchHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 467788888888999999988876666665 34677778889999999999999888754
No 370
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=65.49 E-value=1.6e+02 Score=29.97 Aligned_cols=32 Identities=9% Similarity=0.127 Sum_probs=24.4
Q ss_pred HHHHhCCChhHHHHHHHhhhhcCCCCChhcHH
Q 001763 397 GGYSQNCYAHEVVDLFFAMKSSGFHADDFTYT 428 (1017)
Q Consensus 397 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 428 (1017)
+-..+.+++++|+..+.+....|+..|..+.+
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~n 42 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLN 42 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhh
Confidence 34456778888999999888888887776653
No 371
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=65.23 E-value=11 Score=26.20 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=21.8
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHc
Q 001763 937 VQLSNIYAALGNWNEVNTLRREMREK 962 (1017)
Q Consensus 937 ~~l~~~y~~~g~~~~a~~~~~~m~~~ 962 (1017)
..|+..|...|+.+.|.++.+.+.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 56888999999999999988877754
No 372
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=65.10 E-value=32 Score=28.51 Aligned_cols=65 Identities=20% Similarity=0.213 Sum_probs=46.8
Q ss_pred CC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCC--CCchHHHHHHHHHhcCCcH-HHHHHHHHHH
Q 001763 896 EP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPE--NPSPYVQLSNIYAALGNWN-EVNTLRREMR 960 (1017)
Q Consensus 896 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~--~~~~~~~l~~~y~~~g~~~-~a~~~~~~m~ 960 (1017)
+| |......+...+...|+++.|...+-.+++.+|. +..+...|..++...|.-+ -+.+.|++|-
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL~ 86 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKLA 86 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45 4557777788888999999999999888888874 4778888888888888854 6666776664
No 373
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=64.76 E-value=14 Score=37.56 Aligned_cols=63 Identities=19% Similarity=0.284 Sum_probs=43.8
Q ss_pred hccCCHHHHHHHHHh-CCCCCCH-HHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHH
Q 001763 878 GRWGFLKEAEEFIEQ-LTFEPDS-RIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLS 940 (1017)
Q Consensus 878 ~~~g~~~eA~~~~~~-~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~ 940 (1017)
.+.|+.++|..+++- +...|+. .+..-++.....+++.-+|...|-+++.+.|.|..++++-.
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 467788888887765 3555643 35544555555667888888888888888888888777644
No 374
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=64.52 E-value=56 Score=35.93 Aligned_cols=122 Identities=11% Similarity=0.007 Sum_probs=61.5
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCChH--hHHHHHHHcc--cCCcHHHHHHHHHHhhhhcCC-CcCchhHHHHHHhhhcc
Q 001763 806 FAKNGYAEDALKVFHEMKETQAMPDDV--TFLGVLTACS--HAGRVSEGRQIFETMVSCHGI-QPRVDHCACMVDLLGRW 880 (1017)
Q Consensus 806 ~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~l~~~~~--~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~l~~~l~~~ 880 (1017)
+..++++..|.++++++.+. +.++.. .+..+..+|. ..-++++|.+.++........ .-...+...++......
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~ 219 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVLKAL 219 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHH
Confidence 34677888888888888775 444333 3344445543 466777888888877652111 01122333333332222
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHH-HHHHHH--hcCCchHHHHHHHHHHhh
Q 001763 881 GFLKEAEEFIEQLTFEPDSRIWTT-LLGACG--VHRDDIRGRLAAKKLIEL 928 (1017)
Q Consensus 881 g~~~eA~~~~~~~~~~p~~~~~~~-ll~~~~--~~g~~~~a~~~~~~~l~~ 928 (1017)
..+....+....-...+....... +.++-+ ..|+++.|...+-+++|+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 220 ESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred HhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 222222222211111122222223 335544 368888888777777776
No 375
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=64.42 E-value=12 Score=29.69 Aligned_cols=48 Identities=15% Similarity=0.080 Sum_probs=36.6
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCh--HhHHHHHHHcccCCcHHHHHHHHH
Q 001763 808 KNGYAEDALKVFHEMKETQAMPDD--VTFLGVLTACSHAGRVSEGRQIFE 855 (1017)
Q Consensus 808 ~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~ 855 (1017)
..++.++|+..++..++.-.+|.. .++..|+.+|+..|++.+.+++-.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788999999998885444332 577888899999999988877543
No 376
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=63.64 E-value=13 Score=22.58 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKE 824 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 824 (1017)
.|..++..+...|++++|...|++.++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 455666666666666666666666655
No 377
>PRK10941 hypothetical protein; Provisional
Probab=63.18 E-value=34 Score=35.32 Aligned_cols=71 Identities=17% Similarity=0.046 Sum_probs=52.8
Q ss_pred HHHHhhhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHH
Q 001763 872 CMVDLLGRWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNI 942 (1017)
Q Consensus 872 ~l~~~l~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~ 942 (1017)
++-.+|.+.++++.|.+..+.+ .+.| |+.-|..-+-.+.+-|....|..-++..++.-|+++.+-..-.++
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 4455677777777777777775 3555 455788888888888999999999999999999888775544433
No 378
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=61.78 E-value=68 Score=26.90 Aligned_cols=63 Identities=16% Similarity=0.205 Sum_probs=47.9
Q ss_pred HHHHHHcCCCchhHHHhhhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHH
Q 001763 197 LIDMYAKLNNVSDARRVFDGAVDLDTVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVT 262 (1017)
Q Consensus 197 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 262 (1017)
-++.+...|++++|..+.+....||...|-++-. .+.|-.+.+..-+.+|...| .|...+|..
T Consensus 45 RlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 45 RLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 3456778899999999999998999999988754 46677777777788887777 555555543
No 379
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=61.38 E-value=48 Score=36.37 Aligned_cols=137 Identities=13% Similarity=0.147 Sum_probs=71.1
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCh---HhHHHHHHHcccCCcHHHHHHHHHHh---hh---hcCCCcCchhHHHHHHhhh
Q 001763 808 KNGYAEDALKVFHEMKETQAMPDD---VTFLGVLTACSHAGRVSEGRQIFETM---VS---CHGIQPRVDHCACMVDLLG 878 (1017)
Q Consensus 808 ~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~m---~~---~~~~~p~~~~~~~l~~~l~ 878 (1017)
+||-. +|..+++-+...|+.-.. ++|+ --|++.=-.++++..++-+ .. +.|+..+.+.+++|...|
T Consensus 147 RHGtp-DarlL~e~~~a~G~~a~EGG~ISYn---lPYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpLtgtL- 221 (480)
T TIGR01503 147 RHGTP-DARLLAEIILAGGFTSFEGGGISYN---IPYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPLTGTL- 221 (480)
T ss_pred cCCCC-cHHHHHHHHHHcCCCccCCCcceec---cccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCCCCCc-
Confidence 45543 467777888887765433 3443 2356555667777776633 22 247777777777654322
Q ss_pred ccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHH
Q 001763 879 RWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRRE 958 (1017)
Q Consensus 879 ~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 958 (1017)
++|...+--.++.+.. +.++ .-.+ ++-.|.+.|+..+-....+.
T Consensus 222 ----------------vPPsisiav~ilE~Ll----------a~eq----GVks------isvgy~Q~Gn~~QDiaai~a 265 (480)
T TIGR01503 222 ----------------VPPSISNAIGIIEGLL----------AAEQ----GVKN------ITVGYGQVGNLTQDIAALRA 265 (480)
T ss_pred ----------------cChHHHHHHHHHHHHH----------HHHc----CCeE------EEeccccCCChHHHHHHHHH
Confidence 3554444334443321 1111 1111 22356777776654444444
Q ss_pred HHHcCCc--cCCceeEEEECCEEEEEecC
Q 001763 959 MREKGVK--KFPGCSWIVLGQNTNFFVAG 985 (1017)
Q Consensus 959 m~~~~~~--~~~g~s~i~~~~~~~~f~~~ 985 (1017)
+++..-+ +.-||--+++.--.|.|+-+
T Consensus 266 L~~l~~eYl~~~g~~Dv~i~tV~hqwMG~ 294 (480)
T TIGR01503 266 LEEQTNEYLKAYGYNDVFVTTVFHQWMGG 294 (480)
T ss_pred HHHHHHHHHHhCCCCceEEEEEeeeccCC
Confidence 4433222 22355557777777877643
No 380
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=61.30 E-value=43 Score=27.83 Aligned_cols=48 Identities=4% Similarity=0.018 Sum_probs=37.7
Q ss_pred chHHHHHHHHHHhcCCCCChhhHHHHHHHHhcccchhHHHHHHHHHHH
Q 001763 304 DAEAVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIK 351 (1017)
Q Consensus 304 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 351 (1017)
.-++.+-+..+....+.|++....+.+++|.+.+++..|..+++-+..
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 345566667777777888888888888898888888888888887663
No 381
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=61.05 E-value=96 Score=35.04 Aligned_cols=128 Identities=10% Similarity=0.097 Sum_probs=66.3
Q ss_pred hHHHhHHHhcCCHHHHHHHHHhccCC--Chh--HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHccc
Q 001763 768 SALIDMYAKCGDVKRSAQVFDEMAER--NYV--ISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSH 843 (1017)
Q Consensus 768 ~~l~~~y~~~g~~~~A~~~~~~~~~~--~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 843 (1017)
..|+.-|.+.+++++|..++..|.=. +.. .+.+.+++.+.+..-..+.+..++.++-.=+.|....-.....-|..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d 491 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRD 491 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHH
Confidence 35677889999999999999887642 222 23445555556655556666666666554333322111111111111
Q ss_pred CCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHH
Q 001763 844 AGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGR 919 (1017)
Q Consensus 844 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 919 (1017)
-=.+-|.+.|. -+.|.+++++|.-+.-++. +.+.+..+-..-...|+.+.|.
T Consensus 492 -~V~~~aRRfFh--------------------hLLR~~rfekAFlLAvdi~---~~DLFmdlh~~A~~~ge~~La~ 543 (545)
T PF11768_consen 492 -PVSDLARRFFH--------------------HLLRYQRFEKAFLLAVDIG---DRDLFMDLHYLAKDKGELALAE 543 (545)
T ss_pred -HHHHHHHHHHH--------------------HHHHhhHHHHHHHHHHhcc---chHHHHHHHHHHHhccchhhhh
Confidence 00112233333 3456788888887766654 2223333333333556666554
No 382
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=60.97 E-value=28 Score=36.11 Aligned_cols=91 Identities=14% Similarity=0.058 Sum_probs=71.4
Q ss_pred hHHHHHHhhhccCCHHHHHHHHHhC-C---CCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHH
Q 001763 869 HCACMVDLLGRWGFLKEAEEFIEQL-T---FEPD--SRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNI 942 (1017)
Q Consensus 869 ~~~~l~~~l~~~g~~~eA~~~~~~~-~---~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~ 942 (1017)
+|--=++-|.+..++..|.+.+.+- . -.|| .+.|.+-..+-..-||+-.++.-..+++..+|.+..+|+.=+..
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 3444455677888999999998652 1 2443 44677777766677999999999999999999999999999999
Q ss_pred HHhcCCcHHHHHHHHHH
Q 001763 943 YAALGNWNEVNTLRREM 959 (1017)
Q Consensus 943 y~~~g~~~~a~~~~~~m 959 (1017)
+....++.+|...-+.-
T Consensus 163 ~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999988887766543
No 383
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=60.83 E-value=3.7e+02 Score=32.51 Aligned_cols=187 Identities=15% Similarity=0.099 Sum_probs=89.5
Q ss_pred HhcCCHHHHHHHHHhccC----CChh------HHHHHHHH-HHHhCCCHHHHHHHHHHHHHC----CCCCChHhHHHHHH
Q 001763 775 AKCGDVKRSAQVFDEMAE----RNYV------ISWNSMIV-GFAKNGYAEDALKVFHEMKET----QAMPDDVTFLGVLT 839 (1017)
Q Consensus 775 ~~~g~~~~A~~~~~~~~~----~~~~------~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~l~~ 839 (1017)
...+++++|..++.+... ++.. ..|+.+-. .....|+.++|+++.+..+.. -..+..+.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 445666777666665432 1111 24554433 233557777777777776653 11122334455555
Q ss_pred HcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHH-----HHhhhccCCHHHHHHH--HHhC-----CCCCC----HHHHH
Q 001763 840 ACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACM-----VDLLGRWGFLKEAEEF--IEQL-----TFEPD----SRIWT 903 (1017)
Q Consensus 840 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l-----~~~l~~~g~~~eA~~~--~~~~-----~~~p~----~~~~~ 903 (1017)
+..-.|++++|..+.....+. .-.-+..++... ...+..+|+..-|... +... +-.|- ..+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 666677777777766655441 112223333222 2335566633322222 2111 11221 11233
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhh----CCCC---CchHHHHHHHHHhcCCcHHHHHHHHHHHHcCCc
Q 001763 904 TLLGACGVHRDDIRGRLAAKKLIEL----EPEN---PSPYVQLSNIYAALGNWNEVNTLRREMREKGVK 965 (1017)
Q Consensus 904 ~ll~~~~~~g~~~~a~~~~~~~l~~----~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 965 (1017)
.+++++. +.+.+...+.+.++. .|.. -..+..|+.++...|+.++|......+......
T Consensus 585 ~ll~~~~---r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 585 QLLRAWL---RLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLN 650 (894)
T ss_pred HHHHHHH---HHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 3333322 244444444444443 2221 122346777788888888887777666654443
No 384
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=60.65 E-value=2.6e+02 Score=30.56 Aligned_cols=120 Identities=14% Similarity=0.108 Sum_probs=78.0
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHhhCCC--CCCc-eeeh----hhhhhcccCCCchHHHHHHHHHHHCCCCcCHHh
Q 001763 659 FDDDFLHIALLSMYMNSKRNTDARLLFTEFPN--PKST-VLWT----AVISGHAQNDSNYEALHFYREMRSHNVLPDQAT 731 (1017)
Q Consensus 659 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~----~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t 731 (1017)
|-.......+.+++...|+.+.|.+++++..- .... ..++ .+-.+-++.. -...-|..-
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~--------------~~~~eNR~f 102 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLD--------------YRRPENRQF 102 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccC--------------CccccchHH
Confidence 78899999999999999999999988776532 0000 0000 0000000000 000112222
Q ss_pred HHH---HHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHH-hcCCHHHHHHHHHhccC
Q 001763 732 FVS---VLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYA-KCGDVKRSAQVFDEMAE 792 (1017)
Q Consensus 732 ~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~-~~g~~~~A~~~~~~~~~ 792 (1017)
|.+ -+..+.+.|-+..|.++.+.+...++..|+.....+||.|+ ++++++--+++.+....
T Consensus 103 flal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 103 FLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 333 34567788999999999999999999888888888899886 77888877877776543
No 385
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=60.21 E-value=45 Score=29.78 Aligned_cols=70 Identities=17% Similarity=0.197 Sum_probs=46.9
Q ss_pred CCChHhHHHHHHHcccCC---cHHHHHHHHHHhhhhcCCCc--CchhHHHHHHhhhccCCHHHHHHHHHhC-CCCCCH
Q 001763 828 MPDDVTFLGVLTACSHAG---RVSEGRQIFETMVSCHGIQP--RVDHCACMVDLLGRWGFLKEAEEFIEQL-TFEPDS 899 (1017)
Q Consensus 828 ~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~~~~p--~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~~ 899 (1017)
.+...+-..+..+..++. ++.+++.+++...+. -.| ..+....+.-.+.|.|+++++.++++.+ ..+||+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~--~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS--AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh--cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 455566666777776554 456788888888751 223 2344555667788999999999888774 455554
No 386
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=60.15 E-value=43 Score=32.36 Aligned_cols=72 Identities=13% Similarity=0.121 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHh---CCCCCcchHhHHHhHHHhcCCHHHH
Q 001763 711 YEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHT---GYDLDEITGSALIDMYAKCGDVKRS 783 (1017)
Q Consensus 711 ~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~y~~~g~~~~A 783 (1017)
++|...|-++...+.- +...+-..+..+....+.+++++++-.+++. +-.+|+.++.+|+.+|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l-~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPEL-ETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4455555555554422 3333344444444566666777666655543 2235677777777777777777665
No 387
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=59.94 E-value=51 Score=27.44 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHH
Q 001763 711 YEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIF 756 (1017)
Q Consensus 711 ~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 756 (1017)
-++.+-++.+....+.|+.....+.|.+|.+.+++..|.++++-+.
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3455556666666778888888899999999999999999888776
No 388
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=59.41 E-value=2.6e+02 Score=30.28 Aligned_cols=123 Identities=7% Similarity=0.125 Sum_probs=76.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCCChH--------hHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchh----HHHHHHh
Q 001763 809 NGYAEDALKVFHEMKETQAMPDDV--------TFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDH----CACMVDL 876 (1017)
Q Consensus 809 ~g~~~~A~~~~~~m~~~g~~p~~~--------~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~----~~~l~~~ 876 (1017)
+.++++|.++-++.+..-..-|.- +|..+..+|...|+...-...+.......-+.-+.+. .+|+.+.
T Consensus 139 ~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~ 218 (493)
T KOG2581|consen 139 QKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRN 218 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHH
Confidence 456677776666654421111222 2333444566778777777777666554334444333 4677778
Q ss_pred hhccCCHHHHHHHHHhCCCCC--CHHHHH---HH-HHHHHhcCCchHHHHHHHHHHhhCCC
Q 001763 877 LGRWGFLKEAEEFIEQLTFEP--DSRIWT---TL-LGACGVHRDDIRGRLAAKKLIELEPE 931 (1017)
Q Consensus 877 l~~~g~~~eA~~~~~~~~~~p--~~~~~~---~l-l~~~~~~g~~~~a~~~~~~~l~~~p~ 931 (1017)
|...+.++.|.+++.+...+. .+.-|. -. +..-..+++++.|.+.+-+++.+.|+
T Consensus 219 yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 219 YLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 888899999999998875321 122332 22 23455688999999998888888885
No 389
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=58.99 E-value=92 Score=28.48 Aligned_cols=88 Identities=5% Similarity=0.123 Sum_probs=49.9
Q ss_pred HHcCCCCChhh--HHHHHHHHhccCCHHHHHHHHHhcCC---------CCccchHHHHHHHhccCC-chHHHHHHHHHHh
Q 001763 249 IKVGCVPDQVA--FVTVINVCFNLGRLDEARELFAQMQN---------PNVVAWNVMISGHAKRGY-DAEAVNYFKRMRK 316 (1017)
Q Consensus 249 ~~~g~~p~~~t--~~~li~~~~~~g~~~~A~~~~~~m~~---------~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~ 316 (1017)
.+.+..++..+ .+.++.-....+++.....+++.+.. .+...|.+++.+..+..- ---+..+|.-|++
T Consensus 29 ~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~ 108 (145)
T PF13762_consen 29 QEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK 108 (145)
T ss_pred hhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 33344444433 45555555555666666666555531 344556666666655444 3345566666666
Q ss_pred cCCCCChhhHHHHHHHHhcc
Q 001763 317 AGVKSSRSTLGSVLSGISSL 336 (1017)
Q Consensus 317 ~g~~p~~~t~~~ll~~~~~~ 336 (1017)
.+.+++..-|..++.+|.+.
T Consensus 109 ~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 109 NDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cCCCCCHHHHHHHHHHHHcC
Confidence 66677777777777666554
No 390
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=58.10 E-value=2.6e+02 Score=29.91 Aligned_cols=120 Identities=13% Similarity=0.146 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHh---CCCHHHHHHHH
Q 001763 745 LRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAK---NGYAEDALKVF 819 (1017)
Q Consensus 745 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~---~g~~~~A~~~~ 819 (1017)
.+.-..+++++++.++. +......++..+.+..+-++..+.++++.. ++....|...+..... .-.+++...+|
T Consensus 47 ~E~klsilerAL~~np~-~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 47 AERKLSILERALKHNPD-SERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 34555667777777663 667777777777777777777777887776 3334477766665443 23455666666
Q ss_pred HHHHHC------CC------CCCh-----HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCC-CcC
Q 001763 820 HEMKET------QA------MPDD-----VTFLGVLTACSHAGRVSEGRQIFETMVSCHGI-QPR 866 (1017)
Q Consensus 820 ~~m~~~------g~------~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-~p~ 866 (1017)
.+.++. +. .|+. ..|..+.....++|..+.|..+++.+.+ +.+ .|.
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE-~n~~~P~ 189 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLE-FNFFRPE 189 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHH-HHcCCcc
Confidence 555431 11 1111 1233444456789999999999999998 443 443
No 391
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=57.11 E-value=17 Score=22.61 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=22.3
Q ss_pred CCchHHHHHHHHHHhhCCCCCchHHHHHH
Q 001763 913 RDDIRGRLAAKKLIELEPENPSPYVQLSN 941 (1017)
Q Consensus 913 g~~~~a~~~~~~~l~~~p~~~~~~~~l~~ 941 (1017)
|+.+.+..+++++++..|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 56778888888888888877777766554
No 392
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=56.79 E-value=5e+02 Score=32.69 Aligned_cols=32 Identities=16% Similarity=0.091 Sum_probs=12.4
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 001763 896 EPDSRIWTTLLGACGVHRDDIRGRLAAKKLIE 927 (1017)
Q Consensus 896 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~ 927 (1017)
.|+..+-..-+.++...+....+...+.++++
T Consensus 849 D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 849 DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 44444333333333332222334444444443
No 393
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=56.66 E-value=24 Score=24.51 Aligned_cols=25 Identities=36% Similarity=0.578 Sum_probs=18.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcC
Q 001763 228 MIAGYVQAGLPEAAFELFEKMIKVG 252 (1017)
Q Consensus 228 li~~~~~~g~~~~A~~~~~~m~~~g 252 (1017)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4567778888888888888777554
No 394
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=56.28 E-value=18 Score=35.38 Aligned_cols=55 Identities=22% Similarity=0.224 Sum_probs=28.2
Q ss_pred hccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC
Q 001763 878 GRWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPEN 932 (1017)
Q Consensus 878 ~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~ 932 (1017)
...|+.+.|-+++.+. ..-| ....|.-+...-.+.|+++.|..++++.++++|++
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3445555555555543 2333 33355555555555555555555555555555544
No 395
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=56.16 E-value=97 Score=31.96 Aligned_cols=31 Identities=23% Similarity=0.115 Sum_probs=23.7
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHhhCC
Q 001763 659 FDDDFLHIALLSMYMNSKRNTDARLLFTEFP 689 (1017)
Q Consensus 659 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 689 (1017)
..++..+..++..|.+.|++.+|+..|-.-.
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~ 117 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFLLGT 117 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHHTS-
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHhcC
Confidence 3688999999999999999999998775543
No 396
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=56.10 E-value=37 Score=30.92 Aligned_cols=69 Identities=16% Similarity=0.091 Sum_probs=45.9
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHH
Q 001763 883 LKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNT 954 (1017)
Q Consensus 883 ~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 954 (1017)
.++|.++++-|. ...............||+..|..+.+.++..+|+|..+....+++|.+.|.-.+...
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~~~ 125 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSENAN 125 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SSHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccCHH
Confidence 345555555553 122222333445578999999999999999999999999999999988876554433
No 397
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=55.77 E-value=67 Score=27.11 Aligned_cols=58 Identities=16% Similarity=0.177 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHh-CCCCCcchHhHHH
Q 001763 712 EALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHT-GYDLDEITGSALI 771 (1017)
Q Consensus 712 ~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~ 771 (1017)
+..+-++.+....+.|+.....+.|.+|.+.+++..|.++++-+... +.. ...|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHH
Confidence 44455566666678899999999999999999999999999987643 332 22555444
No 398
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=55.69 E-value=51 Score=33.50 Aligned_cols=85 Identities=15% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHhCCCHHHHHHHHHHHHH--CCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhc-
Q 001763 803 IVGFAKNGYAEDALKVFHEMKE--TQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGR- 879 (1017)
Q Consensus 803 ~~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~- 879 (1017)
|.+++.-|++.+++...-+--+ ..+.|...-...|+ |++.|......++-..-+.+-+..--++ |..++.+|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILL--ysKv~Ep~amlev~~~WL~~p~Nq~lp~-y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILL--YSKVQEPAAMLEVASAWLQDPSNQSLPE-YGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHH--HHHhcCHHHHHHHHHHHHhCcccCCchh-hHHHHHHHHHH
Q ss_pred ----cCCHHHHHHHH
Q 001763 880 ----WGFLKEAEEFI 890 (1017)
Q Consensus 880 ----~g~~~eA~~~~ 890 (1017)
.|.++||++++
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
No 399
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=55.31 E-value=16 Score=35.61 Aligned_cols=54 Identities=11% Similarity=0.285 Sum_probs=32.7
Q ss_pred cccCCcHHHHHHHHHHhhhhcCCCcC-chhHHHHHHhhhccCCHHHHHHHHHhC-CCCC
Q 001763 841 CSHAGRVSEGRQIFETMVSCHGIQPR-VDHCACMVDLLGRWGFLKEAEEFIEQL-TFEP 897 (1017)
Q Consensus 841 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p 897 (1017)
..+.|+.+.+.++|.+..+ +.|+ ...|-.+...-.++|+++.|.+.+++. .++|
T Consensus 5 ~~~~~D~~aaaely~qal~---lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 5 LAESGDAEAAAELYNQALE---LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred hcccCChHHHHHHHHHHhh---cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 3456666677777776655 3343 445556666666777777777666654 4554
No 400
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=55.08 E-value=31 Score=28.88 Aligned_cols=51 Identities=12% Similarity=0.145 Sum_probs=36.3
Q ss_pred hcCCchHHHHHHHHHHhhCCCC---------CchHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 001763 911 VHRDDIRGRLAAKKLIELEPEN---------PSPYVQLSNIYAALGNWNEVNTLRREMRE 961 (1017)
Q Consensus 911 ~~g~~~~a~~~~~~~l~~~p~~---------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 961 (1017)
..||+..|...+.+.++..... ..+...++.++...|++++|.+..++..+
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5677777777777776653321 24567788899999999999888776654
No 401
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=54.71 E-value=65 Score=27.17 Aligned_cols=46 Identities=15% Similarity=0.136 Sum_probs=31.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHH
Q 001763 893 LTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQ 938 (1017)
Q Consensus 893 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~ 938 (1017)
+-+-|++.+..+-+.+|++-+|+..|++.+|-+-..-.+....|-.
T Consensus 39 ~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~ 84 (108)
T PF02284_consen 39 YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPY 84 (108)
T ss_dssp SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHH
T ss_pred cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHH
Confidence 4467899999999999999999999999999776655444334443
No 402
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=53.88 E-value=48 Score=24.19 Aligned_cols=37 Identities=22% Similarity=0.228 Sum_probs=25.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHH
Q 001763 799 WNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGV 837 (1017)
Q Consensus 799 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 837 (1017)
...+..++.+.|++++|.+..+.+++ +.|+..-...|
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L 40 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHH
Confidence 34567778888888888888888888 67876544443
No 403
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=52.92 E-value=1.1e+02 Score=34.48 Aligned_cols=112 Identities=10% Similarity=0.087 Sum_probs=79.6
Q ss_pred HHHHHhhCCCCCCceeeh---hhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHH
Q 001763 681 ARLLFTEFPNPKSTVLWT---AVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFH 757 (1017)
Q Consensus 681 A~~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 757 (1017)
+..+|..|.. ++...|- .-+-.....|+...|...+.........-..+..+.|.....+.|....|-.++.+.+.
T Consensus 592 ~~~~~~~~~~-~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~ 670 (886)
T KOG4507|consen 592 GSFLFHAINK-PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALA 670 (886)
T ss_pred HHHHHHHhcC-CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHh
Confidence 4455555555 4444554 33334455799999999988877643222346677778888888888888888887776
Q ss_pred hCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCC
Q 001763 758 TGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERN 794 (1017)
Q Consensus 758 ~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~ 794 (1017)
... ..+-++..++++|....+++.|++.|+...+.+
T Consensus 671 ~~~-sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 671 INS-SEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred hcc-cCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 663 366778888999999999999999998776633
No 404
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=51.92 E-value=4.7e+02 Score=30.93 Aligned_cols=121 Identities=17% Similarity=0.132 Sum_probs=68.7
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCCcee-e---hhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCc
Q 001763 669 LSMYMNSKRNTDARLLFTEFPNPKSTVL-W---TAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSS 744 (1017)
Q Consensus 669 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~ 744 (1017)
+-.+.--|+.++|..+++++...+|++. + .++..+|+-.|+..-...++.-.... +.-|..-...+.-++.-..+
T Consensus 508 GiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~d 586 (929)
T KOG2062|consen 508 GIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRD 586 (929)
T ss_pred hHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecC
Confidence 3345556777788888888776344432 2 24566777777766555555444432 22232222222224455667
Q ss_pred HHHHHHHHHHHHHhCCCCCcchH--hHHHhHHHhcCCHHHHHHHHHhccC
Q 001763 745 LRDGGEIHSLIFHTGYDLDEITG--SALIDMYAKCGDVKRSAQVFDEMAE 792 (1017)
Q Consensus 745 ~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~y~~~g~~~~A~~~~~~~~~ 792 (1017)
.+....+.+.+.+. ..|.+..- .+|+-+++-.| ..+|+.+++.|..
T Consensus 587 p~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 587 PEQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTS 634 (929)
T ss_pred hhhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhc
Confidence 77777776655432 23344433 34455555555 4789999998887
No 405
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=51.66 E-value=2.9e+02 Score=28.36 Aligned_cols=31 Identities=16% Similarity=0.241 Sum_probs=19.8
Q ss_pred hhhcccCCCchHHHHHHHHHHHCCCCcCHHh
Q 001763 701 ISGHAQNDSNYEALHFYREMRSHNVLPDQAT 731 (1017)
Q Consensus 701 i~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t 731 (1017)
..-.++.+++++|+..|.+.+..|+.-|..+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~ 40 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKT 40 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhh
Confidence 3344556677777777777777766666544
No 406
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=51.20 E-value=1.5e+02 Score=29.57 Aligned_cols=51 Identities=16% Similarity=0.119 Sum_probs=35.3
Q ss_pred hcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 001763 911 VHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMRE 961 (1017)
Q Consensus 911 ~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 961 (1017)
..|++-++++....++..+|.|..+|+.-+...+..=+.++|..-+....+
T Consensus 242 ~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 242 KKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 456666777777777777777777777777777766666666666655554
No 407
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=50.04 E-value=18 Score=28.95 Aligned_cols=65 Identities=18% Similarity=0.186 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHH
Q 001763 881 GFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMR 960 (1017)
Q Consensus 881 g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 960 (1017)
+.+++|.+.+++.- .+-..|+.+.|+..|++.++.--.-..+-+. .....-.|++|.++..+|+
T Consensus 3 ~~~~~A~~~I~kaL-------------~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~---~~~~~~~w~~ar~~~~Km~ 66 (79)
T cd02679 3 GYYKQAFEEISKAL-------------RADEWGDKEQALAHYRKGLRELEEGIAVPVP---SAGVGSQWERARRLQQKMK 66 (79)
T ss_pred hHHHHHHHHHHHHh-------------hhhhcCCHHHHHHHHHHHHHHHHHHcCCCCC---cccccHHHHHHHHHHHHHH
Confidence 34677777776631 0114488888888888887642110000000 4556678999999999998
Q ss_pred H
Q 001763 961 E 961 (1017)
Q Consensus 961 ~ 961 (1017)
.
T Consensus 67 ~ 67 (79)
T cd02679 67 T 67 (79)
T ss_pred H
Confidence 6
No 408
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.66 E-value=3.9e+02 Score=32.75 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=19.3
Q ss_pred ehhhhhhcccCCCchHHHHHHHHHHH
Q 001763 697 WTAVISGHAQNDSNYEALHFYREMRS 722 (1017)
Q Consensus 697 ~~~li~~~~~~g~~~~A~~~~~~m~~ 722 (1017)
|..|+..|...|.+++|+++|++...
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 66677777777777777777777765
No 409
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=49.59 E-value=45 Score=36.66 Aligned_cols=108 Identities=16% Similarity=0.221 Sum_probs=56.8
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhcc---CC
Q 001763 806 FAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRW---GF 882 (1017)
Q Consensus 806 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~---g~ 882 (1017)
+...|++++|+..|+.++.. ..+.........+++.++....++ | .....+.+-.|. ..
T Consensus 214 ~~t~gKF~eA~~~Fr~iL~~----------i~l~vv~~~~E~~e~~eli~icrE-Y-------ilgl~iEl~Rr~l~~~~ 275 (422)
T PF06957_consen 214 LFTAGKFEEAIEIFRSILHS----------IPLLVVESREEEDEAKELIEICRE-Y-------ILGLSIELERRELPKDP 275 (422)
T ss_dssp HHHTT-HHHHHHHHHHHHHH----------HHC--BSSCHHHHHHHHHHHHHHH-H-------HHHHHHHHHHCTS-TTT
T ss_pred HHhcCCHHHHHHHHHHHHHH----------hheeeecCHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHhccccc
Confidence 35678888888888887652 112223334445556665555544 2 111112222111 11
Q ss_pred HHHH---HHH---HHhCCCCCCHH--HHHHHHHHHHhcCCchHHHHHHHHHHhhCCC
Q 001763 883 LKEA---EEF---IEQLTFEPDSR--IWTTLLGACGVHRDDIRGRLAAKKLIELEPE 931 (1017)
Q Consensus 883 ~~eA---~~~---~~~~~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~ 931 (1017)
.++. .++ |....++|... ++++-++.+.+++|+..|...++++|++.|.
T Consensus 276 ~~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~ 332 (422)
T PF06957_consen 276 VEDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPS 332 (422)
T ss_dssp HHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--S
T ss_pred hhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC
Confidence 2222 222 33334566433 4556667788999999999999999999884
No 410
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=49.33 E-value=1.1e+02 Score=30.56 Aligned_cols=96 Identities=13% Similarity=0.096 Sum_probs=64.9
Q ss_pred HhHHHhHHHhcCCHHHHHHHHHhc---------cC-CChh----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 001763 767 GSALIDMYAKCGDVKRSAQVFDEM---------AE-RNYV----------ISWNSMIVGFAKNGYAEDALKVFHEMKETQ 826 (1017)
Q Consensus 767 ~~~l~~~y~~~g~~~~A~~~~~~~---------~~-~~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 826 (1017)
...-++-+.+.|++.+|..-+... ++ |+.+ +.+-++..++...|++-++++...+.+..
T Consensus 181 l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~- 259 (329)
T KOG0545|consen 181 LHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH- 259 (329)
T ss_pred HHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc-
Confidence 333455566777777766665533 12 3333 12334556677788999999999999884
Q ss_pred CCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCc
Q 001763 827 AMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRV 867 (1017)
Q Consensus 827 ~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~ 867 (1017)
.|+. ..|.--..|....-+.++|..-|..+++ +.|..
T Consensus 260 -~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~---ldpsl 297 (329)
T KOG0545|consen 260 -HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE---LDPSL 297 (329)
T ss_pred -CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh---cChhh
Confidence 5655 5777778888888888899999988877 45543
No 411
>PRK13342 recombination factor protein RarA; Reviewed
Probab=49.19 E-value=4.2e+02 Score=29.67 Aligned_cols=116 Identities=12% Similarity=0.085 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHC---CC-CcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHH
Q 001763 711 YEALHFYREMRSH---NV-LPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQV 786 (1017)
Q Consensus 711 ~~A~~~~~~m~~~---~~-~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~ 786 (1017)
++...++++.... |+ ..+......++..+ .|+...+..+++.+...+... ..+...++
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~I----------------t~~~v~~~ 215 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSI----------------TLELLEEA 215 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCC----------------CHHHHHHH
Confidence 4455555554322 33 44444455555443 688888888877765432111 11222222
Q ss_pred HHhc---cCCChhHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCC
Q 001763 787 FDEM---AERNYVISWNSMIVGFAK---NGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAG 845 (1017)
Q Consensus 787 ~~~~---~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 845 (1017)
+... ..++.. .+..++.++.+ .++.+.|+..+..|++.|..|..+.-..+..++...|
T Consensus 216 ~~~~~~~~d~~~~-~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 216 LQKRAARYDKDGD-EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HhhhhhccCCCcc-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 2221 112212 34455555544 4788999999999999988877555444444444443
No 412
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=48.67 E-value=1.2e+02 Score=33.29 Aligned_cols=137 Identities=21% Similarity=0.173 Sum_probs=91.3
Q ss_pred hCCCHHHHHHH-HHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHH
Q 001763 808 KNGYAEDALKV-FHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEA 886 (1017)
Q Consensus 808 ~~g~~~~A~~~-~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA 886 (1017)
..|+...|-+- +.-+....-.|+.+.+.+.+ .++.|.++++.+......+ -+-....+..|+..-+...|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 45887777654 44444444456666555444 7899999999998877654 3445567788888888899999999
Q ss_pred HHHHHhCC-CC-CCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCC-CCchHHHHH-HHHHhcCC
Q 001763 887 EEFIEQLT-FE-PDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPE-NPSPYVQLS-NIYAALGN 948 (1017)
Q Consensus 887 ~~~~~~~~-~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~-~~~~~~~l~-~~y~~~g~ 948 (1017)
..+.+.|- .+ .++.+...-.......|-++++....++++.++|. +++.-+.|+ .-|+..|+
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccceeccCcc
Confidence 99888763 11 23334443344455668889999999999999874 344433333 33555554
No 413
>PHA02875 ankyrin repeat protein; Provisional
Probab=48.59 E-value=4.3e+02 Score=29.49 Aligned_cols=12 Identities=17% Similarity=0.241 Sum_probs=6.3
Q ss_pred HHHHHHHHhhcc
Q 001763 508 EAFNMFRRMNLV 519 (1017)
Q Consensus 508 ~A~~~~~~m~~~ 519 (1017)
+..+-+..|...
T Consensus 298 ~C~~ei~~mk~~ 309 (413)
T PHA02875 298 KCIIELRRIKSE 309 (413)
T ss_pred HHHHHHHHHHhh
Confidence 444555556553
No 414
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.49 E-value=3.1e+02 Score=34.13 Aligned_cols=112 Identities=14% Similarity=0.092 Sum_probs=67.9
Q ss_pred hHhHHHhHHHhcCCHHHHHHHHHhccCC---Ch----------------------hH------HHHHHHHHHHhCCCHHH
Q 001763 766 TGSALIDMYAKCGDVKRSAQVFDEMAER---NY----------------------VI------SWNSMIVGFAKNGYAED 814 (1017)
Q Consensus 766 ~~~~l~~~y~~~g~~~~A~~~~~~~~~~---~~----------------------~~------~~~~l~~~~~~~g~~~~ 814 (1017)
.-..++.+|..+|+..+|+..|.+.... +. .. -|-..+..+.++|..+.
T Consensus 922 ~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~ 1001 (1480)
T KOG4521|consen 922 IRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEE 1001 (1480)
T ss_pred HHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHH
Confidence 3445566778888888888888765420 00 00 13356777778888888
Q ss_pred HHHHHHHHHHCCCCCCh----HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCc----hhHHHHHHhhhccCCHHH
Q 001763 815 ALKVFHEMKETQAMPDD----VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRV----DHCACMVDLLGRWGFLKE 885 (1017)
Q Consensus 815 A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~l~~~l~~~g~~~e 885 (1017)
+.++...+++. +.||. .+++.+.+-....|.|.+|.+..- . .|+. .....++..+..+|+++.
T Consensus 1002 vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~---~----npdserrrdcLRqlvivLfecg~l~~ 1072 (1480)
T KOG4521|consen 1002 VCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAIL---R----NPDSERRRDCLRQLVIVLFECGELEA 1072 (1480)
T ss_pred HHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHH---c----CCcHHHHHHHHHHHHHHHHhccchHH
Confidence 88877777774 22222 345666666677777777755433 2 3443 335556667777776554
No 415
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=47.46 E-value=1.4e+02 Score=25.50 Aligned_cols=49 Identities=12% Similarity=0.140 Sum_probs=18.3
Q ss_pred HHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 001763 773 MYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKE 824 (1017)
Q Consensus 773 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 824 (1017)
.+.+.|++++|...=.....||.. .|.++.. .+.|-.+++...+.++-.
T Consensus 49 sLmNrG~Yq~ALl~~~~~~~pdL~-p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 49 SLMNRGDYQEALLLPQCHCYPDLE-PWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp HHHHTT-HHHHHHHHTTS--GGGH-HHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHhhHHHHHHHHhcccCCCccHH-HHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 344455555552222222224444 4443322 234444444444444433
No 416
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=47.40 E-value=73 Score=32.24 Aligned_cols=73 Identities=15% Similarity=0.253 Sum_probs=44.5
Q ss_pred chHHHHHHHHHHhh-----CCCCCch---HHHHHHH-HHhcCCcHHHHHHHHHHHHcCCccCCceeEEEECCEEEEEecC
Q 001763 915 DIRGRLAAKKLIEL-----EPENPSP---YVQLSNI-YAALGNWNEVNTLRREMREKGVKKFPGCSWIVLGQNTNFFVAG 985 (1017)
Q Consensus 915 ~~~a~~~~~~~l~~-----~p~~~~~---~~~l~~~-y~~~g~~~~a~~~~~~m~~~~~~~~~g~s~i~~~~~~~~f~~~ 985 (1017)
.+.|..+|++++++ .|.+|.- ..+.+-. |...|+.++|.++-+..-+..+....+ .+
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~--------------l~ 207 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDT--------------LS 207 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGG--------------SH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcc--------------cc
Confidence 36777788887664 4544432 2233333 456899999999988887766654332 23
Q ss_pred CCCCCChHHHHHHHHH
Q 001763 986 DTSHPNADRICAVLED 1001 (1017)
Q Consensus 986 d~~~~~~~~~~~~l~~ 1001 (1017)
+.+++++..|...|.+
T Consensus 208 e~~~~d~~~ilqlLrd 223 (236)
T PF00244_consen 208 EESYKDSTLILQLLRD 223 (236)
T ss_dssp TTTHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHH
Confidence 4556666666666654
No 417
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.39 E-value=22 Score=37.02 Aligned_cols=83 Identities=12% Similarity=0.064 Sum_probs=61.8
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCch-hHHHHHHhhhccCCH
Q 001763 806 FAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVD-HCACMVDLLGRWGFL 883 (1017)
Q Consensus 806 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~l~~~g~~ 883 (1017)
....|.+++|++.|...++ +.|.. ..|..-.+++.+.+++..|++-+...++ +.|+.. .|-.-..+-.-.|.+
T Consensus 124 Aln~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~e---in~Dsa~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIE---INPDSAKGYKFRGYAERLLGNW 198 (377)
T ss_pred HhcCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhc---cCcccccccchhhHHHHHhhch
Confidence 3466889999999999988 45655 6777888889999999999998888776 677643 344334444557888
Q ss_pred HHHHHHHHhC
Q 001763 884 KEAEEFIEQL 893 (1017)
Q Consensus 884 ~eA~~~~~~~ 893 (1017)
++|...+...
T Consensus 199 e~aa~dl~~a 208 (377)
T KOG1308|consen 199 EEAAHDLALA 208 (377)
T ss_pred HHHHHHHHHH
Confidence 8888777654
No 418
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.92 E-value=4.1e+02 Score=28.95 Aligned_cols=59 Identities=17% Similarity=0.081 Sum_probs=41.9
Q ss_pred chHHHHHHHHHcCCCchhHHHhhhcCCC------CCcchHHHHHHHHHHcCChhHHHHHHHHHHH
Q 001763 192 FCKGALIDMYAKLNNVSDARRVFDGAVD------LDTVSWTSMIAGYVQAGLPEAAFELFEKMIK 250 (1017)
Q Consensus 192 ~~~~~li~~~~~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 250 (1017)
..+.-+.+-|..||+++.|.+.+....+ .-+..|-.+|..-...|+|.....+..+..+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 3456678889999999999999887544 1233466677777777888777777666554
No 419
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=46.46 E-value=2.2e+02 Score=29.50 Aligned_cols=111 Identities=10% Similarity=0.040 Sum_probs=0.0
Q ss_pred HHHHHHHHH-----hcCCCCccchHHHHHHHhc--cCCchHHHHHHHHHH-hcCCCCChhhHHHHHHHHhcccchhHHHH
Q 001763 273 LDEARELFA-----QMQNPNVVAWNVMISGHAK--RGYDAEAVNYFKRMR-KAGVKSSRSTLGSVLSGISSLAALDFGLI 344 (1017)
Q Consensus 273 ~~~A~~~~~-----~m~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 344 (1017)
+.+|+++|+ +-.-.|...-..+++.... +.....-.++.+-+. +.|-.++..+...+|..++..+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Q ss_pred HHHHHHHh-CCCCchhhhHHHHHHHHccCChhHHHHHHhh
Q 001763 345 VHAEAIKQ-GLYSNVYVASSLINMYAKCEKMESAKKVFDS 383 (1017)
Q Consensus 345 ~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 383 (1017)
++...... +...|...|..+|....+.|+..-..++.+.
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
No 420
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=46.35 E-value=43 Score=36.80 Aligned_cols=86 Identities=9% Similarity=-0.030 Sum_probs=46.1
Q ss_pred cccCCCchHHHHHHHHHHHCCCCcCHHhHHHHH-HHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHH
Q 001763 704 HAQNDSNYEALHFYREMRSHNVLPDQATFVSVL-RACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKR 782 (1017)
Q Consensus 704 ~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~ 782 (1017)
+...+.++.|+.++.+.++. .|+...|-+.= .++.+.+++..|..=...+++..+. ....|..-+.++.+.+++.+
T Consensus 14 ~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred hcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHHHHH
Confidence 44455666666666666653 55544333222 4555566666666555555555543 33444444555555556666
Q ss_pred HHHHHHhccC
Q 001763 783 SAQVFDEMAE 792 (1017)
Q Consensus 783 A~~~~~~~~~ 792 (1017)
|...|+....
T Consensus 91 A~~~l~~~~~ 100 (476)
T KOG0376|consen 91 ALLDLEKVKK 100 (476)
T ss_pred HHHHHHHhhh
Confidence 6666655443
No 421
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=45.57 E-value=90 Score=31.99 Aligned_cols=60 Identities=10% Similarity=0.207 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-ChHhHHHHHHHcccCCcHHHHHHHHHHhhh
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMP-DDVTFLGVLTACSHAGRVSEGRQIFETMVS 859 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 859 (1017)
..+.....|...|.+.+|.++.++.+. +.| +...+-.|+..+...|+--.+.+.|+.+.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 344556778899999999999999988 566 556677888888899988888888877754
No 422
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=44.90 E-value=4.2e+02 Score=28.37 Aligned_cols=65 Identities=15% Similarity=0.025 Sum_probs=37.7
Q ss_pred CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHc---ccCCcHHHHHHHHHHhhh
Q 001763 793 RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTAC---SHAGRVSEGRQIFETMVS 859 (1017)
Q Consensus 793 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~---~~~g~~~~a~~~~~~m~~ 859 (1017)
++....+..++..+.+..+.++..+.+++++.. .|+. ..+...+... ...-.+++....|.+.+.
T Consensus 62 p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 62 PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 343445666777777777777777778888774 4544 3344444332 223345666666665544
No 423
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=44.66 E-value=99 Score=28.28 Aligned_cols=78 Identities=14% Similarity=0.100 Sum_probs=56.4
Q ss_pred chhHHHHHHHhcCCchhHHHHhcccC---------CCCchhHHHHHHHHHcCCC-hhhHHHHHHHHHhCCCCCChhhHHH
Q 001763 92 LGNAIVDLYAKCGIANLAEKVFDRLE---------DRDILAWNSILSMYSKRGS-FENVFKSFGLLCNRGGVPNGFTFAI 161 (1017)
Q Consensus 92 ~~~~li~~~~~~g~~~~A~~~f~~~~---------~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~t~~~ 161 (1017)
..|+++.-....+++..-.++.+.+. ..+-.+|++++.+.++... ---+..+|..|.+.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 45777777676677777666666653 2345578888888877766 3356778888888788888888888
Q ss_pred HHHHhhcC
Q 001763 162 VLSACSKS 169 (1017)
Q Consensus 162 ll~~~~~~ 169 (1017)
++++|.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 88887654
No 424
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=44.42 E-value=7.5e+02 Score=31.14 Aligned_cols=92 Identities=8% Similarity=-0.110 Sum_probs=41.4
Q ss_pred cCchhHHHHHHhhhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 001763 865 PRVDHCACMVDLLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYA 944 (1017)
Q Consensus 865 p~~~~~~~l~~~l~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~ 944 (1017)
++...-...+.+|+..|...++...+...-..+|..+-..-+.++...+. +.+...+..+++ +| +......-++.+.
T Consensus 787 ~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~-D~-~~~VR~~A~~aL~ 863 (897)
T PRK13800 787 PDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT-DP-HLDVRKAAVLALT 863 (897)
T ss_pred CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc-CC-CHHHHHHHHHHHh
Confidence 45555556666666666654443333333334554444444444444443 234444444442 22 3344444444444
Q ss_pred hcCCcHHHHHHHHHH
Q 001763 945 ALGNWNEVNTLRREM 959 (1017)
Q Consensus 945 ~~g~~~~a~~~~~~m 959 (1017)
..+.-.++...+...
T Consensus 864 ~~~~~~~a~~~L~~a 878 (897)
T PRK13800 864 RWPGDPAARDALTTA 878 (897)
T ss_pred ccCCCHHHHHHHHHH
Confidence 432223444444333
No 425
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.11 E-value=35 Score=40.17 Aligned_cols=74 Identities=19% Similarity=0.257 Sum_probs=55.4
Q ss_pred hhhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHH
Q 001763 876 LLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTL 955 (1017)
Q Consensus 876 ~l~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~ 955 (1017)
+....|+++.|++...+.. |+.+|..|+.....+||.+.|+..|++.- .+..|+-+|.-.|+.++-.++
T Consensus 652 LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~k--------nfekLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTK--------NFEKLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhh--------hhhheeEEEEEeCCHHHHHHH
Confidence 4456788888888877754 67799999988778899999988888643 455677788888887766555
Q ss_pred HHHHH
Q 001763 956 RREMR 960 (1017)
Q Consensus 956 ~~~m~ 960 (1017)
.+..+
T Consensus 721 ~~iae 725 (1202)
T KOG0292|consen 721 MKIAE 725 (1202)
T ss_pred HHHHH
Confidence 54443
No 426
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=43.28 E-value=1.5e+02 Score=25.28 Aligned_cols=80 Identities=18% Similarity=0.218 Sum_probs=50.2
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHhcCCCCccchHHHHHHHhccCCchHHHHHHHHHH
Q 001763 236 GLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEARELFAQMQNPNVVAWNVMISGHAKRGYDAEAVNYFKRMR 315 (1017)
Q Consensus 236 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 315 (1017)
...++|..+.+.+...+. -....--+-+..+.+.|++++|+..=.....||...|-+|-. .+.|--+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 356788888888777663 223333334456778899999955544555688888887755 46787788888887776
Q ss_pred hcC
Q 001763 316 KAG 318 (1017)
Q Consensus 316 ~~g 318 (1017)
.+|
T Consensus 97 ~~g 99 (116)
T PF09477_consen 97 SSG 99 (116)
T ss_dssp T-S
T ss_pred hCC
Confidence 543
No 427
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=42.96 E-value=1.2e+02 Score=24.78 Aligned_cols=39 Identities=8% Similarity=0.131 Sum_probs=29.3
Q ss_pred hcCCHHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHHH
Q 001763 776 KCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDAL 816 (1017)
Q Consensus 776 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 816 (1017)
..|+.+.|.++++.+. ++.. .+..++.++...|+.+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~-aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEG-WFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCc-HHHHHHHHHHHcCchhhhh
Confidence 4578888888888888 7766 7778888888877766554
No 428
>PRK13342 recombination factor protein RarA; Reviewed
Probab=42.27 E-value=5.2e+02 Score=28.89 Aligned_cols=44 Identities=7% Similarity=0.014 Sum_probs=30.9
Q ss_pred hHHHHHHHHHh---CCChhHHHHHHHhhhhcCCCCChhcHHHHHHhh
Q 001763 391 LWNALLGGYSQ---NCYAHEVVDLFFAMKSSGFHADDFTYTSILSSC 434 (1017)
Q Consensus 391 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 434 (1017)
.+..+++++.+ .++.+.|+..+..|.+.|..|....-..+..++
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34555555555 478999999999999988888766555555444
No 429
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=42.04 E-value=6.7e+02 Score=29.85 Aligned_cols=47 Identities=15% Similarity=0.225 Sum_probs=28.1
Q ss_pred cCCHHHHHHHHHhc----cCC---ChhHHHHHH-----HHHHHhCCCHHHHHHHHHHHHH
Q 001763 777 CGDVKRSAQVFDEM----AER---NYVISWNSM-----IVGFAKNGYAEDALKVFHEMKE 824 (1017)
Q Consensus 777 ~g~~~~A~~~~~~~----~~~---~~~~~~~~l-----~~~~~~~g~~~~A~~~~~~m~~ 824 (1017)
.|+..+..+..... ++. +.. .|..+ ...|...|+.++|.....+...
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~-LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQ-LWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhH-HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 56666655554432 222 233 67433 3347778999999888877654
No 430
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=41.32 E-value=2.6e+02 Score=28.69 Aligned_cols=64 Identities=6% Similarity=0.004 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhh
Q 001763 797 ISWNSMIVGFAKNGYAEDALKVFHEMKE----TQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSC 860 (1017)
Q Consensus 797 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 860 (1017)
..|..++.-|++.++.+.+.++..+..+ .|.+-|. .+-..|.-.|....-+++-++..+.|.++
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEk 184 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEK 184 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Confidence 3777888888888888888876665544 3555554 23344555566666777777777777773
No 431
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=41.08 E-value=89 Score=31.88 Aligned_cols=59 Identities=24% Similarity=0.175 Sum_probs=48.9
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcC
Q 001763 905 LLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKG 963 (1017)
Q Consensus 905 ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 963 (1017)
+-+++...++++.|....++++.++|+++...---|-+|.+.|...-|.+-.....+..
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~ 245 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC 245 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence 33567778899999999999999999999888888999999999999988887655443
No 432
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.75 E-value=6.9e+02 Score=30.82 Aligned_cols=57 Identities=12% Similarity=-0.046 Sum_probs=37.1
Q ss_pred hhHHHHHHHhcCCchhHHHHhcccCCCCch-----hHHHHHH---HHHcCCChhhHHHHHHHHHh
Q 001763 93 GNAIVDLYAKCGIANLAEKVFDRLEDRDIL-----AWNSILS---MYSKRGSFENVFKSFGLLCN 149 (1017)
Q Consensus 93 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~-----~~~~li~---~~~~~g~~~~a~~~~~~m~~ 149 (1017)
+..-+..+....++++|..+-+....|++. .+-.+.. -+..+|++++|.+.|.++..
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~ 374 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEI 374 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 444566666677788888877776655543 2333333 24567888888888888754
No 433
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.15 E-value=4.1e+02 Score=26.93 Aligned_cols=187 Identities=11% Similarity=0.174 Sum_probs=119.6
Q ss_pred cCCCchHHHHHHHHHHHCCCCcCH---HhHHHHHHHHhccCcHHHHHHHHHHHHH---hCCC--CCcchHhHHHhHHHhc
Q 001763 706 QNDSNYEALHFYREMRSHNVLPDQ---ATFVSVLRACAVLSSLRDGGEIHSLIFH---TGYD--LDEITGSALIDMYAKC 777 (1017)
Q Consensus 706 ~~g~~~~A~~~~~~m~~~~~~pd~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~--~~~~~~~~l~~~y~~~ 777 (1017)
+..++++|+.-|++.++..-.-.. .++..++....+.+++++....+.+++. ..+. -.....|++++.-...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 445889999999999875322222 3455677888899999998888876642 2221 2344566777766666
Q ss_pred CCHHHHHHHHHhccC-----CChhHHH----HHHHHHHHhCCCHHHHHHHHHHHHHCCCC----CCh-------HhHHHH
Q 001763 778 GDVKRSAQVFDEMAE-----RNYVISW----NSMIVGFAKNGYAEDALKVFHEMKETQAM----PDD-------VTFLGV 837 (1017)
Q Consensus 778 g~~~~A~~~~~~~~~-----~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~g~~----p~~-------~~~~~l 837 (1017)
.+.+--.+.++.... ++.. .| ..+...|...|.+.+-.++++++.+.-.. .|. ..|..-
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeR-LWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNER-LWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcce-eeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence 666666666554322 3333 44 35777888888888888888777654211 111 234455
Q ss_pred HHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHH----HHhhhccCCHHHHH-HHHHhC
Q 001763 838 LTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACM----VDLLGRWGFLKEAE-EFIEQL 893 (1017)
Q Consensus 838 ~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l----~~~l~~~g~~~eA~-~~~~~~ 893 (1017)
+..|..+.+-..-..+|++.+.-..--|.+...+.+ ..+..|.|++++|- ++|+..
T Consensus 198 IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 667777777777788888877644556666655433 45677888988876 445543
No 434
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=39.57 E-value=7.9e+02 Score=29.98 Aligned_cols=51 Identities=10% Similarity=-0.037 Sum_probs=25.7
Q ss_pred CCCchHHHHHHHHHHHC----CCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHH
Q 001763 707 NDSNYEALHFYREMRSH----NVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFH 757 (1017)
Q Consensus 707 ~g~~~~A~~~~~~m~~~----~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 757 (1017)
.|++++|..+-+..... -..+..+.+..+..+....|++++|..+.....+
T Consensus 471 ~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 471 RGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred cCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHH
Confidence 45566666655554432 1122233344444555556666666666554443
No 435
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=39.51 E-value=1.6e+02 Score=25.49 Aligned_cols=55 Identities=13% Similarity=0.313 Sum_probs=35.3
Q ss_pred hHHHHHHHhcCCchhHHHHhcccC--C--------CCchhHHHHHHHHHcCCChhhHHHHHHHHHh
Q 001763 94 NAIVDLYAKCGIANLAEKVFDRLE--D--------RDILAWNSILSMYSKRGSFENVFKSFGLLCN 149 (1017)
Q Consensus 94 ~~li~~~~~~g~~~~A~~~f~~~~--~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 149 (1017)
++|+..|... +......+++.=. . ...--|+.|+.-|...|.+++|++++.+...
T Consensus 3 TaLlk~Yl~~-~~~~l~~llr~~N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 3 TALLKCYLET-NPSLLGPLLRLPNYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHh-CHHHHHHHHccCCcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4566777666 4444444443210 0 0112488888889999999999999888876
No 436
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.57 E-value=8.1e+02 Score=29.83 Aligned_cols=62 Identities=16% Similarity=0.121 Sum_probs=35.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhcCCCCCchhHHHHHHHHhhCCchHHHHHHHHHHHcCCCCChHHH
Q 001763 564 GSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNVEDAVVLYRGMQTEGLSPNDITF 629 (1017)
Q Consensus 564 ~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~ 629 (1017)
+..-++.|...+++..|-+++.++ ..++..+.--|......+++..|-.=+-..++|...+-
T Consensus 392 l~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~~~~~~L~~~L~KKL~~lt~~dk~q 453 (911)
T KOG2034|consen 392 LLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEINQERALRTFLDKKLDRLTPEDKTQ 453 (911)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCChHHHHH
Confidence 344456666667777777777666 33455555555566666666655444444455655443
No 437
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=37.92 E-value=30 Score=30.78 Aligned_cols=41 Identities=29% Similarity=0.434 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTA 840 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 840 (1017)
.|-.=-......|.-.+|..+|++|++.|-.||. +..|+..
T Consensus 97 aWvNDe~tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 97 AWVNDEQTLRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred EEeCCCcchhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 4433223445567778899999999999988874 4445543
No 438
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=37.61 E-value=1.6e+02 Score=26.27 Aligned_cols=44 Identities=9% Similarity=0.015 Sum_probs=36.4
Q ss_pred hhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhh
Q 001763 644 LGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTE 687 (1017)
Q Consensus 644 ~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 687 (1017)
.+.+++..+...|+--.....|...+..+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77888888888887767788888899999999999999998864
No 439
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=37.35 E-value=2e+02 Score=23.67 Aligned_cols=65 Identities=9% Similarity=0.075 Sum_probs=40.6
Q ss_pred HHHHHHHHHhCCCCchhhhHHHHHHHHccCChhHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHH
Q 001763 343 LIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFDSLDERNAVLWNALLGGYSQNCYAHEVV 409 (1017)
Q Consensus 343 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 409 (1017)
.++++...+.|+-. ......+-.+-...|+.+.|+++++.++ +....|..++.++...|.-+-|-
T Consensus 22 ~~v~d~ll~~~ilT-~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 22 RDVCDKCLEQGLLT-EEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHhcCCCC-HHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 34555555555331 1122222222235588888999999988 88888888888888877755443
No 440
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=36.74 E-value=1.6e+02 Score=25.38 Aligned_cols=28 Identities=11% Similarity=0.284 Sum_probs=23.9
Q ss_pred cchHHHHHHHhccCCchHHHHHHHHHHh
Q 001763 289 VAWNVMISGHAKRGYDAEAVNYFKRMRK 316 (1017)
Q Consensus 289 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 316 (1017)
.-|..++.-|...|..++|++++.++.+
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3578888888999999999999998876
No 441
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=36.58 E-value=1.9e+02 Score=31.52 Aligned_cols=55 Identities=7% Similarity=-0.150 Sum_probs=34.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCChHh----HHHHHHHcc--cCCcHHHHHHHHHH
Q 001763 802 MIVGFAKNGYAEDALKVFHEMKETQAMPDDVT----FLGVLTACS--HAGRVSEGRQIFET 856 (1017)
Q Consensus 802 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~----~~~l~~~~~--~~g~~~~a~~~~~~ 856 (1017)
.+..+...+++..|.++|+++.+..+.|+... +..+..+|. ..-++++|.+.++.
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 34456677889999999999988755554433 233333432 35566677777664
No 442
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=36.19 E-value=2.3e+02 Score=30.81 Aligned_cols=35 Identities=23% Similarity=0.279 Sum_probs=19.9
Q ss_pred HHHHHHHcCCccCCceeEEEECCEEEEEecCCCCCCChHHHHHH
Q 001763 955 LRREMREKGVKKFPGCSWIVLGQNTNFFVAGDTSHPNADRICAV 998 (1017)
Q Consensus 955 ~~~~m~~~~~~~~~g~s~i~~~~~~~~f~~~d~~~~~~~~~~~~ 998 (1017)
+|..|.+..+...+..|....- |. .|+.+++|-++
T Consensus 309 yWqamiEeAiTr~esfsVmYtP-----fa----tki~~d~iek~ 343 (569)
T PF15015_consen 309 YWQAMIEEAITRAESFSVMYTP-----FA----TKIKADKIEKV 343 (569)
T ss_pred HHHHHHHHHHhcccceeEEeec-----cc----ccccHHHHHHH
Confidence 4667777777666665544322 22 26666766643
No 443
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=35.95 E-value=4.4e+02 Score=26.24 Aligned_cols=16 Identities=44% Similarity=0.372 Sum_probs=9.4
Q ss_pred hhccCCHHHHHHHHHh
Q 001763 877 LGRWGFLKEAEEFIEQ 892 (1017)
Q Consensus 877 l~~~g~~~eA~~~~~~ 892 (1017)
+.|.|..++|+++.+.
T Consensus 113 liR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 113 LIREGKTEEALEFAQT 128 (228)
T ss_pred HHHhhhHHHHHHHHHH
Confidence 3456666666666554
No 444
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=35.91 E-value=4.5e+02 Score=26.12 Aligned_cols=25 Identities=8% Similarity=0.096 Sum_probs=14.2
Q ss_pred hHHHHHHHcccCCcHHHHHHHHHHh
Q 001763 833 TFLGVLTACSHAGRVSEGRQIFETM 857 (1017)
Q Consensus 833 ~~~~l~~~~~~~g~~~~a~~~~~~m 857 (1017)
.+..+...|...|+.++....++.+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~A 144 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKA 144 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHH
Confidence 4555666677777755444444443
No 445
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=35.41 E-value=4.4e+02 Score=27.77 Aligned_cols=94 Identities=15% Similarity=0.097 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCCCChHhH-HHHHHHcccCCcHHHHHHHHHHhhhhcCC---CcCch
Q 001763 797 ISWNSMIVGFAKNGYAEDALKVFHEMKE----TQAMPDDVTF-LGVLTACSHAGRVSEGRQIFETMVSCHGI---QPRVD 868 (1017)
Q Consensus 797 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~~~~~---~p~~~ 868 (1017)
..|.....-|++.|+.+.|++.+.+..+ .|.+-|.+-+ .-++-.|.....+.+-++..+.+.++-|- +....
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 4677888899999999999988877654 4667776433 34455566666667766666666663322 22233
Q ss_pred hHHHHHHhhhccCCHHHHHHHHHh
Q 001763 869 HCACMVDLLGRWGFLKEAEEFIEQ 892 (1017)
Q Consensus 869 ~~~~l~~~l~~~g~~~eA~~~~~~ 892 (1017)
.|..+--+ ...++.+|-.++-.
T Consensus 185 vY~Gly~m--svR~Fk~Aa~Lfld 206 (393)
T KOG0687|consen 185 VYQGLYCM--SVRNFKEAADLFLD 206 (393)
T ss_pred HHHHHHHH--HHHhHHHHHHHHHH
Confidence 44433222 23457777777643
No 446
>PF15469 Sec5: Exocyst complex component Sec5
Probab=35.28 E-value=3.5e+02 Score=26.01 Aligned_cols=86 Identities=20% Similarity=0.277 Sum_probs=43.9
Q ss_pred HHHHHcccCCcHHHHHHHHHHhhhhcCCCc-CchhHHHHHHhhhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 001763 836 GVLTACSHAGRVSEGRQIFETMVSCHGIQP-RVDHCACMVDLLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRD 914 (1017)
Q Consensus 836 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~l~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 914 (1017)
.-+.-|.+.|+++.++..|.++...++-.. ....+.. -+.|..+.+++.. ..+|..|... ..+
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~---------v~~eve~ii~~~r----~~l~~~L~~~---~~s 154 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQK---------VWSEVEKIIEEFR----EKLWEKLLSP---PSS 154 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHH---------HHHHHHHHHHHHH----HHHHHHHhCC---CCC
Confidence 345557778888888888888766332221 1111111 1223333332211 1133333322 145
Q ss_pred chHHHHHHHHHHhhCCCCCchHH
Q 001763 915 DIRGRLAAKKLIELEPENPSPYV 937 (1017)
Q Consensus 915 ~~~a~~~~~~~l~~~p~~~~~~~ 937 (1017)
.+....+.+.+++++|+..+++.
T Consensus 155 ~~~~~~~i~~Ll~L~~~~dPi~~ 177 (182)
T PF15469_consen 155 QEEFLKLIRKLLELNVEEDPIWY 177 (182)
T ss_pred HHHHHHHHHHHHhCCCCCCHHHH
Confidence 66677777888888885444433
No 447
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=34.94 E-value=3.7e+02 Score=25.75 Aligned_cols=47 Identities=17% Similarity=0.188 Sum_probs=27.4
Q ss_pred HHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHH
Q 001763 906 LGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVN 953 (1017)
Q Consensus 906 l~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~ 953 (1017)
...|...|.+++|++.+++.++ +|++...-..|..+-.+...+..-.
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~l 164 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVL 164 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHH
Confidence 3456667777777777777666 6665555555555544444444433
No 448
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=34.22 E-value=78 Score=23.99 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=11.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHH
Q 001763 801 SMIVGFAKNGYAEDALKVFHEMK 823 (1017)
Q Consensus 801 ~l~~~~~~~g~~~~A~~~~~~m~ 823 (1017)
.+|.+|.+.|++++|.+..+++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 44555555555555555555443
No 449
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=34.16 E-value=4.7e+02 Score=25.78 Aligned_cols=58 Identities=17% Similarity=0.273 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHcCCCchhHHHhhhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHH
Q 001763 176 RQLHCHVIELGFESSSFCKGALIDMYAKLNNVSDARRVFDGAVDLDTVSWTSMIAGYVQAGLPEAAFELFEK 247 (1017)
Q Consensus 176 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 247 (1017)
-++...+...|+..+..+++.|++-|.+.+. ....+.-.|.+|.+.....++.+-++.
T Consensus 144 sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~--------------g~i~FD~FI~ccv~L~~lt~~Fr~~D~ 201 (221)
T KOG0037|consen 144 SELRQALTQLGYRLSPQFYNLLVRKYDRFGG--------------GRIDFDDFIQCCVVLQRLTEAFRRRDT 201 (221)
T ss_pred HHHHHHHHHcCcCCCHHHHHHHHHHhccccC--------------CceeHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4566667778999999999999999987641 122455566666665555555444443
No 450
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=34.05 E-value=65 Score=33.33 Aligned_cols=39 Identities=18% Similarity=0.393 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHH
Q 001763 224 SWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVT 262 (1017)
Q Consensus 224 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 262 (1017)
-||..|..-.+.||+++|+.++++..+.|+.--..+|..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 378999999999999999999999999996655555443
No 451
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=33.49 E-value=1e+02 Score=29.99 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=15.4
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCC
Q 001763 896 EPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEP 930 (1017)
Q Consensus 896 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p 930 (1017)
.|++.++..++.++...|+.++|+...+++..+.|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34444444444444444444444444444444444
No 452
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=33.12 E-value=1.3e+02 Score=25.03 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=13.5
Q ss_pred HHHHHHcccCCcHHHHHHHHHHhhh
Q 001763 835 LGVLTACSHAGRVSEGRQIFETMVS 859 (1017)
Q Consensus 835 ~~l~~~~~~~g~~~~a~~~~~~m~~ 859 (1017)
..+...+...|.+++|...++..++
T Consensus 45 l~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 45 LNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344445555666666666555544
No 453
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.80 E-value=7.5e+02 Score=27.76 Aligned_cols=119 Identities=16% Similarity=0.119 Sum_probs=56.6
Q ss_pred ccCCCchHHHHHHHHHHHCC-CCcCH-------HhHHHHHH-HHhccCcHHHHHHHHHHHHHhCCCCCc--chHhHHHhH
Q 001763 705 AQNDSNYEALHFYREMRSHN-VLPDQ-------ATFVSVLR-ACAVLSSLRDGGEIHSLIFHTGYDLDE--ITGSALIDM 773 (1017)
Q Consensus 705 ~~~g~~~~A~~~~~~m~~~~-~~pd~-------~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~ 773 (1017)
.-.|++.+|++-...|.+-- -.|.. .-.-.++. -|...+.++.|+.-|..+.+.--..|. ..-..+...
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS 413 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 34577777777777776521 12321 11122232 234455666666665554433222122 122234555
Q ss_pred HHhcCCHHHHHHHHHhccCCChhHHHH--------HHHHH--HHhCCCHHHHHHHHHHHHH
Q 001763 774 YAKCGDVKRSAQVFDEMAERNYVISWN--------SMIVG--FAKNGYAEDALKVFHEMKE 824 (1017)
Q Consensus 774 y~~~g~~~~A~~~~~~~~~~~~~~~~~--------~l~~~--~~~~g~~~~A~~~~~~m~~ 824 (1017)
|.+.|+-++--++++.+..++.. ++. -++.| ....|++.||...+.+.++
T Consensus 414 YL~~~~~ed~y~~ld~i~p~nt~-s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 414 YLRIGDAEDLYKALDLIGPLNTN-SLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLK 473 (629)
T ss_pred HHHhccHHHHHHHHHhcCCCCCC-cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 66666666666666655543322 110 01111 1245666666666666555
No 454
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.65 E-value=6.1e+02 Score=26.67 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=33.4
Q ss_pred HHHHHHcccCCcHHHHHHHHHHhhhhcCCCc-----CchhHHHHHHhhhccCCHHHHHHHHHhC
Q 001763 835 LGVLTACSHAGRVSEGRQIFETMVSCHGIQP-----RVDHCACMVDLLGRWGFLKEAEEFIEQL 893 (1017)
Q Consensus 835 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p-----~~~~~~~l~~~l~~~g~~~eA~~~~~~~ 893 (1017)
..|.+.|.+.++|..|.+.+.-+-.+-|... ....+-.+.++|...|+..+|+.++.+.
T Consensus 107 l~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRa 170 (399)
T KOG1497|consen 107 LHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRA 170 (399)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3456667777777777666555433211111 1223445567777777777777777664
No 455
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=32.63 E-value=63 Score=33.44 Aligned_cols=40 Identities=28% Similarity=0.362 Sum_probs=30.4
Q ss_pred hHHHHHHHhccCCchHHHHHHHHHHhcCCCCChhhHHHHH
Q 001763 291 WNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVL 330 (1017)
Q Consensus 291 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 330 (1017)
|+.-|....+.||+++|+++++|..+.|+.--..||...+
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 5678888888888888888888888888776555554433
No 456
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=32.61 E-value=4e+02 Score=26.77 Aligned_cols=20 Identities=5% Similarity=-0.042 Sum_probs=16.5
Q ss_pred cCCchHHHHHHHHHHhhCCC
Q 001763 912 HRDDIRGRLAAKKLIELEPE 931 (1017)
Q Consensus 912 ~g~~~~a~~~~~~~l~~~p~ 931 (1017)
.++...|...++++++++|+
T Consensus 191 ~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 191 AETLQLALALLQRAFQLNDK 210 (230)
T ss_pred cccHHHHHHHHHHHHHhCCC
Confidence 45667899999999999984
No 457
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=32.48 E-value=56 Score=24.76 Aligned_cols=44 Identities=11% Similarity=0.249 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhh
Q 001763 814 DALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVS 859 (1017)
Q Consensus 814 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 859 (1017)
+..++.+.+.. .+-|...-..++.+|.+.|++++|.++.+.+.+
T Consensus 8 ~~~~~~~~lR~--~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 8 ELEELIDSLRA--QRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444444433 223444555666677777777777777666654
No 458
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=32.24 E-value=2e+02 Score=25.38 Aligned_cols=47 Identities=19% Similarity=0.193 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhccCCCccchhhHHHHHHHHh
Q 001763 609 DAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKK 655 (1017)
Q Consensus 609 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 655 (1017)
|..+-++....-.+.|++......|.||.+.+|+..|..+++-+...
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 66666777777889999999999999999999999999999887654
No 459
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=31.95 E-value=98 Score=26.70 Aligned_cols=35 Identities=11% Similarity=0.292 Sum_probs=18.2
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHH
Q 001763 920 LAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNT 954 (1017)
Q Consensus 920 ~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 954 (1017)
..+.++..+.|+.+..++.|++-+-...-|+++.+
T Consensus 65 e~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~ 99 (111)
T PF04781_consen 65 ECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVK 99 (111)
T ss_pred HHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34555666666555555555554444444444443
No 460
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=31.43 E-value=1.4e+02 Score=29.17 Aligned_cols=51 Identities=12% Similarity=-0.024 Sum_probs=29.7
Q ss_pred cCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC
Q 001763 843 HAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL 893 (1017)
Q Consensus 843 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~ 893 (1017)
..++.+......+.+.+.-...|++..|..++.++...|+.+||.+..+++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444333333333333335677777777777777777777777766665
No 461
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=31.13 E-value=5.1e+02 Score=25.94 Aligned_cols=143 Identities=14% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHhhccCChhHHHHHHhhcCCCCcccchhhhHHhHhcCCHHHHHHHHHHhhccCCCCCcccHHHHHHHhhcccCCCcch
Q 001763 466 VDMYAKSRALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQGE 545 (1017)
Q Consensus 466 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~ 545 (1017)
+..|++.-++.-|...++++.+ ..--...|--|.+..+.+---++.+-...+++.-+..-+..++-....
T Consensus 137 MEiyS~ttRFalaCN~s~KIiE--PIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G-------- 206 (333)
T KOG0991|consen 137 MEIYSNTTRFALACNQSEKIIE--PIQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG-------- 206 (333)
T ss_pred HHHHcccchhhhhhcchhhhhh--hHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc--------
Q ss_pred hHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCCCCCchhHHHHHHHHhhCCchHHHHHHHHHHHcCCCCC
Q 001763 546 QVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNVEDAVVLYRGMQTEGLSPN 625 (1017)
Q Consensus 546 ~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~A~~l~~~m~~~g~~p~ 625 (1017)
|..-.-.-+......--+-.+..+|+-..+|.+.....|+..|..++.++|.+++.++.+.|+.|.
T Consensus 207 --------------DMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 207 --------------DMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLKRNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred --------------hHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Q ss_pred hHHHHHH
Q 001763 626 DITFTSL 632 (1017)
Q Consensus 626 ~~t~~~l 632 (1017)
...-+..
T Consensus 273 Dii~~~F 279 (333)
T KOG0991|consen 273 DIITTLF 279 (333)
T ss_pred HHHHHHH
No 462
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=30.35 E-value=4e+02 Score=27.88 Aligned_cols=116 Identities=7% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhcc
Q 001763 712 EALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMA 791 (1017)
Q Consensus 712 ~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~ 791 (1017)
+|.++|++.++ ..=..|.+......--..++.+.+.+...-+.+-..|..+-.|.|++.+|.+.|..+.
T Consensus 234 ~AE~l~k~ALk-----------a~e~~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ 302 (556)
T KOG3807|consen 234 DAERLFKQALK-----------AGETIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLM 302 (556)
T ss_pred HHHHHHHHHHH-----------HHHHHHhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHh
Q ss_pred CCChh----HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHH
Q 001763 792 ERNYV----ISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVL 838 (1017)
Q Consensus 792 ~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~ 838 (1017)
+.-.. .....++.++....-+.+.-.++-+--+....-.. .+|+.-+
T Consensus 303 ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaAL 354 (556)
T KOG3807|consen 303 KEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAAL 354 (556)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHH
No 463
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=30.14 E-value=6.9e+02 Score=26.54 Aligned_cols=122 Identities=10% Similarity=0.055 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHCCCCCChHhHHHHHHHc------ccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHH
Q 001763 812 AEDALKVFHEMKETQAMPDDVTFLGVLTAC------SHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKE 885 (1017)
Q Consensus 812 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~------~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~e 885 (1017)
+++++.++++....+. |-....-.-+.+| ...-+|.+-..+|+.+.. +.|++..--+-..++....-.+.
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSPvV~LNRAVAla~~~Gp~a 347 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSPVVTLNRAVALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCCeEeehHHHHHHHhhhHHh
Confidence 3466666666666543 5444433333222 223456666666666654 45554332222223333333445
Q ss_pred HHHHHHhCCCCC---C-HHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHH
Q 001763 886 AEEFIEQLTFEP---D-SRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYV 937 (1017)
Q Consensus 886 A~~~~~~~~~~p---~-~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~ 937 (1017)
++..++.+.-+| + ...|..-.+.+.+-|..++|..+|++++.+.++..+.-+
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~ 403 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAF 403 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHH
Confidence 555555543332 1 123444556677888888888888888888776555433
No 464
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=30.02 E-value=1.4e+02 Score=21.19 Aligned_cols=33 Identities=24% Similarity=0.448 Sum_probs=20.9
Q ss_pred hccCCchHHHHHHHHHHhcCCCCChhhHHHHHH
Q 001763 299 AKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLS 331 (1017)
Q Consensus 299 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 331 (1017)
.+.|-..++..++++|.+.|+..+...+..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666677777777777776666655555543
No 465
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=29.86 E-value=2.3e+02 Score=31.74 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhh
Q 001763 901 IWTTLLGACGVHRDDIRGRLAAKKLIEL 928 (1017)
Q Consensus 901 ~~~~ll~~~~~~g~~~~a~~~~~~~l~~ 928 (1017)
.|.+|.+....+.++..++.+|-.+.+.
T Consensus 604 MWAtlAa~Av~~~~m~~~EiAYaA~~~i 631 (737)
T KOG1524|consen 604 MWATLAAVAVRKHQMQISEIAYAAALQI 631 (737)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHhhch
Confidence 4555544444444444444444444443
No 466
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=28.96 E-value=1.1e+03 Score=28.27 Aligned_cols=212 Identities=14% Similarity=0.129 Sum_probs=119.7
Q ss_pred HHhHHHhcCCHHHHHHHHHhccC-CChhHH---HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCC
Q 001763 770 LIDMYAKCGDVKRSAQVFDEMAE-RNYVIS---WNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAG 845 (1017)
Q Consensus 770 l~~~y~~~g~~~~A~~~~~~~~~-~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 845 (1017)
++-++.--|+.++|..++++|.. +|+..- ..+++.+|+-.|+-....+++.-.... ++-|..-+-...-++.-..
T Consensus 507 vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~ 585 (929)
T KOG2062|consen 507 VGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFR 585 (929)
T ss_pred HhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEec
Confidence 44455566777899999998876 555422 346777888888877666666554442 2222222323333344556
Q ss_pred cHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCC-HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCchHHHHHHH
Q 001763 846 RVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGF-LKEAEEFIEQLTFEP-DSRIWTTLLGACGVHRDDIRGRLAAK 923 (1017)
Q Consensus 846 ~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~-~~eA~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 923 (1017)
+.+.-..+.+.+.+. ..|....=..|+-...-+|- ..+|+.+++.|...| |.+...++++. |....+
T Consensus 586 dp~~~~s~V~lLses--~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D~~~fVRQgAlIa~---------amIm~Q 654 (929)
T KOG2062|consen 586 DPEQLPSTVSLLSES--YNPHVRYGAAMALGIACAGTGLKEAINLLEPLTSDPVDFVRQGALIAL---------AMIMIQ 654 (929)
T ss_pred ChhhchHHHHHHhhh--cChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcChHHHHHHHHHHHH---------HHHHHh
Confidence 777777777766653 35555544555555555555 789999999887666 44445555432 111111
Q ss_pred HHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCCccCCceeEEEECCEEEEE-ecCCCCCCChHHHHHHHHHH
Q 001763 924 KLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVKKFPGCSWIVLGQNTNFF-VAGDTSHPNADRICAVLEDL 1002 (1017)
Q Consensus 924 ~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~g~s~i~~~~~~~~f-~~~d~~~~~~~~~~~~l~~l 1002 (1017)
+-=++.|+-....-.+..+ -..+.+++..-+-.+..+|+-.-.| +--++ +-....|+....+-.++-.+
T Consensus 655 ~t~~~~pkv~~frk~l~kv--I~dKhEd~~aK~GAilAqGildaGG--------rNvtislqs~tg~~~~~~vvGl~~Fl 724 (929)
T KOG2062|consen 655 QTEQLCPKVNGFRKQLEKV--INDKHEDGMAKFGAILAQGILDAGG--------RNVTISLQSMTGHTKLDAVVGLVVFL 724 (929)
T ss_pred cccccCchHHHHHHHHHHH--hhhhhhHHHHHHHHHHHhhhhhcCC--------ceEEEEEeccCCCCchHHHHHHHHHH
Confidence 1112334333332222222 2235566666677777788754333 22222 33557789888887776655
Q ss_pred H
Q 001763 1003 T 1003 (1017)
Q Consensus 1003 ~ 1003 (1017)
.
T Consensus 725 q 725 (929)
T KOG2062|consen 725 Q 725 (929)
T ss_pred H
Confidence 4
No 467
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=28.86 E-value=5.9e+02 Score=27.05 Aligned_cols=89 Identities=17% Similarity=0.120 Sum_probs=48.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCh--HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcC-chhHHHHHHh
Q 001763 801 SMIVGFAKNGYAEDALKVFHEMKETQ-AMPDD--VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPR-VDHCACMVDL 876 (1017)
Q Consensus 801 ~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~ 876 (1017)
.=++-|.++.++..|...|.+-++.. -.||. +.|.+-..+-...|++..++.-....+. +.|+ ...|--=..+
T Consensus 86 eeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~---~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 86 EEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK---LKPTHLKAYIRGAKC 162 (390)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh---cCcchhhhhhhhhHH
Confidence 34555666667777777777666532 13332 4566666666666777666666665554 4443 2233322344
Q ss_pred hhccCCHHHHHHHHHh
Q 001763 877 LGRWGFLKEAEEFIEQ 892 (1017)
Q Consensus 877 l~~~g~~~eA~~~~~~ 892 (1017)
+....++++|..++++
T Consensus 163 ~~eLe~~~~a~nw~ee 178 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4555566666665554
No 468
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=28.71 E-value=2.8e+02 Score=24.73 Aligned_cols=44 Identities=11% Similarity=0.108 Sum_probs=31.8
Q ss_pred cchhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhc
Q 001763 543 QGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSC 586 (1017)
Q Consensus 543 ~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 586 (1017)
....++..+...|+-...+..|...+..+.+.|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 34445555555554444788899999999999999999999864
No 469
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=28.47 E-value=78 Score=25.14 Aligned_cols=32 Identities=22% Similarity=0.403 Sum_probs=19.5
Q ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 001763 780 VKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKE 824 (1017)
Q Consensus 780 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 824 (1017)
+++|+.++.+....|.. |++++|+.+|.+.++
T Consensus 3 l~kai~Lv~~A~~eD~~-------------gny~eA~~lY~~ale 34 (75)
T cd02680 3 LERAHFLVTQAFDEDEK-------------GNAEEAIELYTEAVE 34 (75)
T ss_pred HHHHHHHHHHHHHhhHh-------------hhHHHHHHHHHHHHH
Confidence 45555555555444444 777777777766655
No 470
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=28.26 E-value=4.2e+02 Score=23.36 Aligned_cols=23 Identities=17% Similarity=0.029 Sum_probs=13.5
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHH
Q 001763 937 VQLSNIYAALGNWNEVNTLRREM 959 (1017)
Q Consensus 937 ~~l~~~y~~~g~~~~a~~~~~~m 959 (1017)
+.-+..+...|+.++|.+-+++.
T Consensus 104 fsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 104 FSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhcCChHHHHHHHHHH
Confidence 34455566677777777666544
No 471
>PRK11619 lytic murein transglycosylase; Provisional
Probab=27.77 E-value=1.1e+03 Score=28.17 Aligned_cols=240 Identities=10% Similarity=-0.037 Sum_probs=122.5
Q ss_pred CCchHHHHHHHHHHHC-CCCcCHH--hHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHH
Q 001763 708 DSNYEALHFYREMRSH-NVLPDQA--TFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSA 784 (1017)
Q Consensus 708 g~~~~A~~~~~~m~~~-~~~pd~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~ 784 (1017)
.+.+.|..++.+.... ++.+... .+..+.......+...++...+....... .+.....-.+..-.+.++++.+.
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHH
Confidence 4557777777776443 2222221 12222222222211344444444333222 13344444455555888888888
Q ss_pred HHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcC
Q 001763 785 QVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHG 862 (1017)
Q Consensus 785 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 862 (1017)
..+..|.. ........=++.++...|+.++|...|+++.. + .+|.+++.+ .+.|..-. + . ..
T Consensus 333 ~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~----~--~~fYG~LAa-~~Lg~~~~----~----~-~~ 396 (644)
T PRK11619 333 TWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ----Q--RGFYPMVAA-QRLGEEYP----L----K-ID 396 (644)
T ss_pred HHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc----C--CCcHHHHHH-HHcCCCCC----C----C-CC
Confidence 88888765 22221223356666668888899888888743 1 234444332 11221100 0 0 00
Q ss_pred CCcCc------hhHHHHHHhhhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhC---CCCC
Q 001763 863 IQPRV------DHCACMVDLLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELE---PENP 933 (1017)
Q Consensus 863 ~~p~~------~~~~~l~~~l~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~---p~~~ 933 (1017)
..|.. ..-..-+..|...|+..+|...+..+....+......+...-...|..+.++.+..+.-..+ -..|
T Consensus 397 ~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp 476 (644)
T PRK11619 397 KAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFP 476 (644)
T ss_pred CCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCC
Confidence 00000 01122345677889999999888765434555566666666678888888888776543221 1234
Q ss_pred chHHHHHHHHHhcCCcHHHHHHHHHHHHcCCc
Q 001763 934 SPYVQLSNIYAALGNWNEVNTLRREMREKGVK 965 (1017)
Q Consensus 934 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 965 (1017)
..|.-...-+...-..+.+.-.-=..+|.+..
T Consensus 477 ~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~ 508 (644)
T PRK11619 477 LAWNDEFRRYTSGKGIPQSYAMAIARQESAWN 508 (644)
T ss_pred cchHHHHHHHHHHcCCCHHHHHHHHHHhcCCC
Confidence 44555555555555566555333233355554
No 472
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=27.43 E-value=2e+02 Score=20.44 Aligned_cols=36 Identities=11% Similarity=0.128 Sum_probs=29.1
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 001763 230 AGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVIN 265 (1017)
Q Consensus 230 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 265 (1017)
.-..+.|-..++..++++|.+.|+--+...|..++.
T Consensus 10 ~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 10 LLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345577888899999999999998888888777665
No 473
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=26.46 E-value=86 Score=28.03 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=26.6
Q ss_pred cccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHH
Q 001763 704 HAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRAC 739 (1017)
Q Consensus 704 ~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~ 739 (1017)
....|.-.+|-.+|++|++.|-+||. |..|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 44457778899999999999999984 66776654
No 474
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=26.34 E-value=1.8e+02 Score=31.96 Aligned_cols=53 Identities=17% Similarity=0.131 Sum_probs=40.0
Q ss_pred HcccCCcHHHHHHHHHHhhhhcCCCcCch--hHHHHHHhhhc--cCCHHHHHHHHHhCC
Q 001763 840 ACSHAGRVSEGRQIFETMVSCHGIQPRVD--HCACMVDLLGR--WGFLKEAEEFIEQLT 894 (1017)
Q Consensus 840 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~~--~~~~l~~~l~~--~g~~~eA~~~~~~~~ 894 (1017)
.....+++..|.++|+.+... ++++.. +|..+..+|.. .-++++|.+.++...
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r--l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR--LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 445789999999999999883 555554 56666666654 556889999998754
No 475
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=25.61 E-value=8.2e+02 Score=25.92 Aligned_cols=81 Identities=7% Similarity=0.011 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHh-CC---CCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHHHHHHH
Q 001763 745 LRDGGEIHSLIFHT-GY---DLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFH 820 (1017)
Q Consensus 745 ~~~a~~~~~~~~~~-~~---~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 820 (1017)
.+.+.+.+...... .. ..++.....+.....+.|.-++-..+++.........-...++.+++...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 45566666655542 11 234444444555555666655555555555543333245566666666666666666666
Q ss_pred HHHHC
Q 001763 821 EMKET 825 (1017)
Q Consensus 821 ~m~~~ 825 (1017)
..+..
T Consensus 226 ~~l~~ 230 (324)
T PF11838_consen 226 LLLSN 230 (324)
T ss_dssp HHHCT
T ss_pred HHcCC
Confidence 66664
No 476
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=25.43 E-value=1.3e+02 Score=20.22 Aligned_cols=28 Identities=18% Similarity=0.099 Sum_probs=21.1
Q ss_pred chHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 001763 934 SPYVQLSNIYAALGNWNEVNTLRREMRE 961 (1017)
Q Consensus 934 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 961 (1017)
..|..||.+-...+++++|.+-+++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4678888888888888888776665543
No 477
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.94 E-value=7.2e+02 Score=30.18 Aligned_cols=131 Identities=12% Similarity=0.203 Sum_probs=81.9
Q ss_pred HhHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCCcHHHH
Q 001763 771 IDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEG 850 (1017)
Q Consensus 771 ~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 850 (1017)
.+....||+++.|.+.-.++-.++ .|..|+..-..+|+.+-|+..|++... |.-|.-.|.-.|+.++-
T Consensus 650 F~LaLe~gnle~ale~akkldd~d---~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL 717 (1202)
T KOG0292|consen 650 FELALECGNLEVALEAAKKLDDKD---VWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKL 717 (1202)
T ss_pred eeeehhcCCHHHHHHHHHhcCcHH---HHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHH
Confidence 345567899999988776554443 899999999999999999998887654 22333346667888776
Q ss_pred HHHHHHhhhhcCCCcCch-hHHHHHHhhhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 001763 851 RQIFETMVSCHGIQPRVD-HCACMVDLLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIE 927 (1017)
Q Consensus 851 ~~~~~~m~~~~~~~p~~~-~~~~l~~~l~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~ 927 (1017)
.+....+.. +.|.. +|-.+ +| .|+.+|-.++++....-| ..|. . -..||.-+.|+...+.+-.
T Consensus 718 ~Km~~iae~----r~D~~~~~qna--lY--l~dv~ervkIl~n~g~~~--layl---t-a~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 718 SKMMKIAEI----RNDATGQFQNA--LY--LGDVKERVKILENGGQLP--LAYL---T-AAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHHHh----hhhhHHHHHHH--HH--hccHHHHHHHHHhcCccc--HHHH---H-HhhcCcHHHHHHHHHhhcc
Confidence 555444322 22221 22111 12 467777777776654333 1121 1 2367888888888777655
No 478
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=24.25 E-value=5.7e+02 Score=26.88 Aligned_cols=107 Identities=11% Similarity=0.083 Sum_probs=50.3
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccC
Q 001763 802 MIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWG 881 (1017)
Q Consensus 802 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g 881 (1017)
++..+.+.++..+-++.++.+.. + ..-...+......|++..|+++.....+. --...+|.|+-++-.+..
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~--v----~~~~~~l~~ll~~~dy~~Al~li~~~~~~---l~~l~~~~c~~~L~~~L~ 174 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKT--V----QQTQSRLQELLEEGDYPGALDLIEECQQL---LEELKGYSCVRHLSSQLQ 174 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--H----HHHHHHHHHHHhcCCHHHHHHHHHHHHHH---HHhcccchHHHHHhHHHH
Confidence 34444454554444444444433 1 11122333444667777777766666552 123445555544432222
Q ss_pred CHHHHH-HH----HHhCCCCCCHHHHHHHHHHHHhcCCchH
Q 001763 882 FLKEAE-EF----IEQLTFEPDSRIWTTLLGACGVHRDDIR 917 (1017)
Q Consensus 882 ~~~eA~-~~----~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 917 (1017)
.+.+-. +. +.++...-|+..|..+..||..-|+...
T Consensus 175 e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~ 215 (291)
T PF10475_consen 175 ETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQS 215 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHH
Confidence 211111 11 1222234566677777777776665544
No 479
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=23.80 E-value=1.2e+02 Score=23.30 Aligned_cols=54 Identities=9% Similarity=0.035 Sum_probs=41.1
Q ss_pred cCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhcc
Q 001763 216 GAVDLDTVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNL 270 (1017)
Q Consensus 216 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 270 (1017)
++..+....++.++..+++..-.++++..++++...| ..+..+|..-++.+++.
T Consensus 2 ~~v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 2 EIVVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLARE 55 (65)
T ss_dssp GTEE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 3445666778889999999888999999999999988 46777777777776653
No 480
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=23.35 E-value=8e+02 Score=27.38 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=24.5
Q ss_pred hhhcccCCCchHHHHHHHH---HHHCCCCcC-HHhHHHHH
Q 001763 701 ISGHAQNDSNYEALHFYRE---MRSHNVLPD-QATFVSVL 736 (1017)
Q Consensus 701 i~~~~~~g~~~~A~~~~~~---m~~~~~~pd-~~t~~~ll 736 (1017)
+..|+.+|+++..+++|+. |+++++.|- ..|-.+++
T Consensus 344 gavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssll 383 (615)
T KOG0508|consen 344 GAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLL 383 (615)
T ss_pred eeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHH
Confidence 4558899999999999886 556666553 34444444
No 481
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=23.10 E-value=91 Score=32.48 Aligned_cols=36 Identities=28% Similarity=0.311 Sum_probs=26.5
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHH
Q 001763 918 GRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVN 953 (1017)
Q Consensus 918 a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~ 953 (1017)
|+..|.+++.+.|.+..+|+.||-++...|+.-+|.
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~av 36 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAV 36 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHH
Confidence 566788888888888888888888888877776664
No 482
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=22.57 E-value=4.6e+02 Score=30.97 Aligned_cols=145 Identities=17% Similarity=0.225 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhH----------HHHHHHcccCCcHHHHHHHHHHhhhhcC-CCcC
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTF----------LGVLTACSHAGRVSEGRQIFETMVSCHG-IQPR 866 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----------~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~~p~ 866 (1017)
+...|+-.|....+++.-+++.+.+.. -||..-+ ..-++--.+-|+-++|+...-.++++.| +.||
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 456677778888888888888888877 3543211 1122233356777888877777766433 4566
Q ss_pred chhH-----HHH--HHhhhccCCHHHHHHHHHhC-CCCCCHH---HHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCch
Q 001763 867 VDHC-----ACM--VDLLGRWGFLKEAEEFIEQL-TFEPDSR---IWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSP 935 (1017)
Q Consensus 867 ~~~~-----~~l--~~~l~~~g~~~eA~~~~~~~-~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~ 935 (1017)
.... --| ..-|..++..+.|.+++++. ..+|.-. -+..|+.+...| ++. -+|+. .+
T Consensus 280 m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~~--Fen-------s~Elq----~I 346 (1226)
T KOG4279|consen 280 MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGEH--FEN-------SLELQ----QI 346 (1226)
T ss_pred eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhhh--ccc-------hHHHH----HH
Confidence 4332 111 12355566677777777664 4555433 233344333221 222 12221 13
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHH
Q 001763 936 YVQLSNIYAALGNWNEVNTLRRE 958 (1017)
Q Consensus 936 ~~~l~~~y~~~g~~~~a~~~~~~ 958 (1017)
-+.|..++.+.|..++-.+.|+.
T Consensus 347 gmkLn~LlgrKG~leklq~YWdV 369 (1226)
T KOG4279|consen 347 GMKLNSLLGRKGALEKLQEYWDV 369 (1226)
T ss_pred HHHHHHHhhccchHHHHHHHHhH
Confidence 34566677777777776666654
No 483
>PF13934 ELYS: Nuclear pore complex assembly
Probab=22.39 E-value=8e+02 Score=24.62 Aligned_cols=107 Identities=19% Similarity=0.171 Sum_probs=61.4
Q ss_pred HHHHHHHHH--HhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHH
Q 001763 798 SWNSMIVGF--AKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVD 875 (1017)
Q Consensus 798 ~~~~l~~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 875 (1017)
.+...+.|+ .-++++++|++.+.+- .+.|+.. .-++.++...|+.+.|..+++.+.- .-.+.+....+..
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~ 149 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFP--DKILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFV 149 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHH
Confidence 445556654 3557777787776322 1222221 1355555667888888888887532 1112233333333
Q ss_pred hhhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 001763 876 LLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHR 913 (1017)
Q Consensus 876 ~l~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g 913 (1017)
+ ..+|.+.||..+.++.+-+-....|..++..|....
T Consensus 150 ~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 150 A-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred H-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 3 566889999988887653222447777777666433
No 484
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=22.35 E-value=3.6e+02 Score=31.25 Aligned_cols=59 Identities=20% Similarity=0.202 Sum_probs=33.0
Q ss_pred chHHHHHHHhccCCch------HHHHHHHHHHhcCCCCChhhHHHHHHHHhcccchhHHHHHHHHHHH
Q 001763 290 AWNVMISGHAKRGYDA------EAVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIK 351 (1017)
Q Consensus 290 ~~~~li~~~~~~g~~~------~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 351 (1017)
.||..|+.+.+.|.++ .|.+++++.. +.-|.-||..++.+....-.-..++-++.+.+.
T Consensus 67 ~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 67 MINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALLCQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHHHHhhcChHhHHhccHHHHHHHH
Confidence 4566666666666553 2333333333 666777787777766554444444555554444
No 485
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=22.22 E-value=2.5e+02 Score=26.83 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=17.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHH
Q 001763 801 SMIVGFAKNGYAEDALKVFHEMKE 824 (1017)
Q Consensus 801 ~l~~~~~~~g~~~~A~~~~~~m~~ 824 (1017)
..+..|.+.|.+++|.+++++...
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc
Confidence 345567777888888877777766
No 486
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=22.18 E-value=3.4e+02 Score=24.19 Aligned_cols=42 Identities=10% Similarity=0.161 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHH
Q 001763 814 DALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFE 855 (1017)
Q Consensus 814 ~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~ 855 (1017)
+..++|..|...|+--.. .-|..-...+...|++.+|.++|+
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 355666666666554333 234444555566666666666664
No 487
>PHA03100 ankyrin repeat protein; Provisional
Probab=21.59 E-value=1.2e+03 Score=26.43 Aligned_cols=20 Identities=15% Similarity=0.333 Sum_probs=9.3
Q ss_pred HHHHhccCCHHHHHHHHHhc
Q 001763 264 INVCFNLGRLDEARELFAQM 283 (1017)
Q Consensus 264 i~~~~~~g~~~~A~~~~~~m 283 (1017)
+...+..|+.+-+.-+++.-
T Consensus 180 L~~A~~~~~~~iv~~Ll~~g 199 (480)
T PHA03100 180 LHIAVEKGNIDVIKFLLDNG 199 (480)
T ss_pred HHHHHHhCCHHHHHHHHHcC
Confidence 33344445555555444443
No 488
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=21.03 E-value=9e+02 Score=27.73 Aligned_cols=98 Identities=21% Similarity=0.234 Sum_probs=64.7
Q ss_pred hHHHHHHhhhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC-CchHHHHHHHHHhcC
Q 001763 869 HCACMVDLLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPEN-PSPYVQLSNIYAALG 947 (1017)
Q Consensus 869 ~~~~l~~~l~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~-~~~~~~l~~~y~~~g 947 (1017)
.-.|+-+-+....++.-|.++-.+..+.. ..+|.+-+-+|.+.+++..|..-|++++++.-++ |....-+.++ ..-|
T Consensus 558 asecLRdqLie~ErYqlaV~mckKc~iD~-f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~diin~-ieGg 635 (1141)
T KOG1811|consen 558 ASECLRDQLIEAERYQLAVEMCKKCGIDT-FGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDIINL-IEGG 635 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCc-ccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHHHh-hcCC
Confidence 34566677777777888887777765432 3389999999999999999999999999997554 3444444433 3344
Q ss_pred CcHHHHHHHHHHHHcCCccCCc
Q 001763 948 NWNEVNTLRREMREKGVKKFPG 969 (1017)
Q Consensus 948 ~~~~a~~~~~~m~~~~~~~~~g 969 (1017)
--.++..++ .|.+.-++..|.
T Consensus 636 pp~dVq~Vr-em~dhlak~apt 656 (1141)
T KOG1811|consen 636 PPRDVQDVR-EMLDHLAKPAPT 656 (1141)
T ss_pred CcchHHHHH-HHHHHhccCCcc
Confidence 333333333 444555655554
No 489
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=20.97 E-value=1.8e+02 Score=29.75 Aligned_cols=75 Identities=12% Similarity=0.085 Sum_probs=39.5
Q ss_pred HHHHHHHHhccCCChh-HHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCC-CChHhHHHHHHHcccCCcHHHHHHHH
Q 001763 781 KRSAQVFDEMAERNYV-ISWNSMIVGFAKNGYAEDALKVFHEMKE----TQAM-PDDVTFLGVLTACSHAGRVSEGRQIF 854 (1017)
Q Consensus 781 ~~A~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~-p~~~~~~~l~~~~~~~g~~~~a~~~~ 854 (1017)
+.|.+.|......... ..-..|+..|...|++++|+++|+.+.. .|+. +...+...+..++.+.|+.++.+.+-
T Consensus 162 ~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 162 EKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4566666655553333 1123566677777777777777777642 2221 11233344445555566655555443
Q ss_pred H
Q 001763 855 E 855 (1017)
Q Consensus 855 ~ 855 (1017)
-
T Consensus 242 l 242 (247)
T PF11817_consen 242 L 242 (247)
T ss_pred H
Confidence 3
No 490
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=20.96 E-value=1.7e+02 Score=32.18 Aligned_cols=62 Identities=13% Similarity=0.073 Sum_probs=45.3
Q ss_pred HhHHHHHHHHhccCcHHHHHHHHHHHH--HhC-----CCCCcchHhHHHhHHHhcCCHHHHHHHHHhcc
Q 001763 730 ATFVSVLRACAVLSSLRDGGEIHSLIF--HTG-----YDLDEITGSALIDMYAKCGDVKRSAQVFDEMA 791 (1017)
Q Consensus 730 ~t~~~ll~~~~~~~~~~~a~~~~~~~~--~~~-----~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~ 791 (1017)
++...|++..+-.||+..|.++++.+. +.+ +.-.+.++.-++-+|.-.+++.+|++.|..+.
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888888888877542 111 22356677788888888899999999987653
No 491
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=20.81 E-value=4.5e+02 Score=21.48 Aligned_cols=45 Identities=11% Similarity=0.241 Sum_probs=32.9
Q ss_pred HHhHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHH
Q 001763 770 LIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDA 815 (1017)
Q Consensus 770 l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 815 (1017)
.-++.+...+.+.|.++++.++.+|.. ++..+..++...|...-|
T Consensus 36 ~e~I~~~~tr~~q~~~LLd~L~~RG~~-AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 36 IEEIQAAGSRRDQARQLLIDLETRGKQ-AFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhcCHH-HHHHHHHHHHhcCchHHH
Confidence 334444556788888888888888888 888888888777765544
No 492
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=20.70 E-value=6e+02 Score=26.97 Aligned_cols=86 Identities=17% Similarity=0.227 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhH-HHHHHhhhccCCHHHHHHH
Q 001763 811 YAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHC-ACMVDLLGRWGFLKEAEEF 889 (1017)
Q Consensus 811 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~~l~~~l~~~g~~~eA~~~ 889 (1017)
+|.....+|+-+.. +.|+.+.-.+-.-+.++..-.+.++...+.+..+.++. ...+| ..-.+++.|.|+.+||...
T Consensus 311 DW~~I~aLYdaL~~--~apSPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~-gy~~~h~~RadlL~rLgr~~eAr~a 387 (415)
T COG4941 311 DWPAIDALYDALEQ--AAPSPVVTLNRAVALAMREGPAAGLAMVEALLARPRLD-GYHLYHAARADLLARLGRVEEARAA 387 (415)
T ss_pred ChHHHHHHHHHHHH--hCCCCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccc-cccccHHHHHHHHHHhCChHHHHHH
Confidence 56667777777777 45666433333334445555677777777766521221 22233 4457899999999999999
Q ss_pred HHhC-CCCCCH
Q 001763 890 IEQL-TFEPDS 899 (1017)
Q Consensus 890 ~~~~-~~~p~~ 899 (1017)
|++. .+.++.
T Consensus 388 ydrAi~La~~~ 398 (415)
T COG4941 388 YDRAIALARNA 398 (415)
T ss_pred HHHHHHhcCCh
Confidence 9874 344433
No 493
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=20.66 E-value=4.5e+02 Score=30.21 Aligned_cols=97 Identities=16% Similarity=0.115 Sum_probs=49.6
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcC-c-------hhHHHHHHhh
Q 001763 807 AKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPR-V-------DHCACMVDLL 877 (1017)
Q Consensus 807 ~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~-------~~~~~l~~~l 877 (1017)
...++...+...+...+. .+|+. ..+..|..+....|....+...+...-.. ..|+ . ..|. +.+.+
T Consensus 78 ~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~-~~~~~ 152 (620)
T COG3914 78 APLADSTLAFLAKRIPLS--VNPENCPAVQNLAAALELDGLQFLALADISEIAEW--LSPDNAEFLGHLIRFYQ-LGRYL 152 (620)
T ss_pred cccccchhHHHHHhhhHh--cCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCcchHHHHhhHHHHHH-HHHHH
Confidence 344455455555555555 34443 55666666665566666655555553321 2232 1 1222 45666
Q ss_pred hccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH
Q 001763 878 GRWGFLKEAEEFIEQL-TFEPD-SRIWTTLLGA 908 (1017)
Q Consensus 878 ~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~ 908 (1017)
.-.|+..++...+++. .+.|. +.+...++.+
T Consensus 153 ~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 153 KLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 6677777777776654 23342 3344455544
No 494
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=20.24 E-value=2.8e+02 Score=19.18 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=28.9
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHH
Q 001763 920 LAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLR 956 (1017)
Q Consensus 920 ~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 956 (1017)
.++..++--+|++...+...++-+...|+-..|.=++
T Consensus 3 ~all~AI~~~P~ddt~RLvYADWL~e~gdp~raefIr 39 (42)
T TIGR02996 3 EALLRAILAHPDDDTPRLVYADWLDEHGDPARAEFIR 39 (42)
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHcCCHHHHhHHH
Confidence 3566778888999889999999999999887665444
No 495
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=20.22 E-value=6.8e+02 Score=24.99 Aligned_cols=20 Identities=30% Similarity=0.224 Sum_probs=14.7
Q ss_pred HHhhhccCCHHHHHHHHHhC
Q 001763 874 VDLLGRWGFLKEAEEFIEQL 893 (1017)
Q Consensus 874 ~~~l~~~g~~~eA~~~~~~~ 893 (1017)
|.-....|+.++|++.+.+.
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHHHHhccHHHHHHHHHHh
Confidence 44557778888888888776
No 496
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=20.11 E-value=5e+02 Score=26.51 Aligned_cols=59 Identities=15% Similarity=0.199 Sum_probs=36.1
Q ss_pred chHhHHHhHHHhcCCHHHHHHHHHhccC----CChh----HHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 001763 765 ITGSALIDMYAKCGDVKRSAQVFDEMAE----RNYV----ISWNSMIVGFAKNGYAEDALKVFHEMK 823 (1017)
Q Consensus 765 ~~~~~l~~~y~~~g~~~~A~~~~~~~~~----~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~ 823 (1017)
.....|+.-|.+.|++++|.++|+.+.. .+.. .....+..++...|+.++.+...-++.
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3445677888888888888888887742 1111 112344556666677776666555543
Done!