Query 001763
Match_columns 1017
No_of_seqs 755 out of 4961
Neff 10.8
Searched_HMMs 29240
Date Tue Mar 26 16:34:53 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001763.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1060-1064//hhsearch_pdb/001763hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 1.0 1 1 331.5 32.6 213 730-945 374-596 (597)
2 2xpi_A Anaphase-promoting comp 1.0 1 1 328.0 34.0 259 700-964 311-581 (597)
3 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 219.4 33.7 284 659-948 98-388 (388)
4 4g26_A Pentatricopeptide repea 1.0 1 1 217.7 18.9 182 123-335 28-222 (501)
5 4g26_A Pentatricopeptide repea 1.0 1 1 215.4 19.7 211 139-371 8-223 (501)
6 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 213.2 32.6 317 636-962 43-368 (388)
7 2gw1_A Mitochondrial precursor 1.0 1 1 201.0 24.7 225 732-962 240-478 (514)
8 2y4t_A DNAJ homolog subfamily 1.0 1 1 198.5 28.1 221 735-958 149-405 (450)
9 2gw1_A Mitochondrial precursor 1.0 1 1 192.6 29.2 237 700-941 243-491 (514)
10 3fp2_A TPR repeat-containing p 1.0 1 1 184.8 31.0 233 700-937 249-500 (537)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=331.54 Aligned_cols=213 Identities=8% Similarity=0.008 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCC--CCHHHHHHHHHHHHH
Q ss_conf 769999999832176898999999999859998740685997678840998989999884168--884687999999998
Q 001763 730 ATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFA 807 (1017)
Q Consensus 730 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~ 807 (1017)
.++..+...+...|++++|..+++.+.+..+. +...++.++.+|.+.|++++|.++|+++.. ++....|+.++.+|.
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99999999999835699999999999872977-78999999999997577799999999999868134389999999999
Q ss_pred HCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC---CCCCC--CHHHHHHHHHHHCCC
Q ss_conf 3899789999999989879999-96769999997045896899999999936421---99767--016788998610369
Q 001763 808 KNGYAEDALKVFHEMKETQAMP-DDVTFLGVLTACSHAGRVSEGRQIFETMVSCH---GIQPR--VDHCACMVDLLGRWG 881 (1017)
Q Consensus 808 ~~g~~~~A~~~~~~~~~~~~~p-d~~~~~~l~~a~~~~g~~~~a~~~~~~m~~~~---~~~p~--~~~~~~l~~~l~~~g 881 (1017)
..|++++|++.|+++.+. .| +..++..++..|.+.|++++|..+|+++.+.. +..|+ ...+..++.+|.+.|
T Consensus 453 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp HHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 857999999999999984--888767999999999981899999999999998532345453549999999999999804
Q ss_pred CHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 9799999998689-999-999899999999712880399999999985089997017978778772
Q 001763 882 FLKEAEEFIEQLT-FEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAA 945 (1017)
Q Consensus 882 ~~~eA~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~ 945 (1017)
++++|.+.++++. ..| +..+|..++.+|...|++++|...++++++++|+++..+..++++|..
T Consensus 531 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf 799999999999973899738999999999981789999999999972088874899999998743
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=328.03 Aligned_cols=259 Identities=9% Similarity=0.006 Sum_probs=176.9
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 32100137991479999999997898867976999999983217689899999999985999874068599767884099
Q 001763 700 VISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGD 779 (1017)
Q Consensus 700 li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 779 (1017)
++.+|.+.|++++|+.+|+++...+ +.+..++..++.++...|++++|..+++.+.+..+. +...++.++.+|.++|+
T Consensus 311 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 388 (597)
T 2xpi_A 311 KADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE-KAVTWLAVGIYYLCVNK 388 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-SHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCC
T ss_conf 9999998468999999999999729-553799999999999827777999999999851835-47999999999998356
Q ss_pred HHHHHHHHHHCCC--CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 8989999884168--8846879999999983899789999999989879999-967699999970458968999999999
Q 001763 780 VKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMP-DDVTFLGVLTACSHAGRVSEGRQIFET 856 (1017)
Q Consensus 780 ~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-d~~~~~~l~~a~~~~g~~~~a~~~~~~ 856 (1017)
+++|.++|+++.. ++...+|+.++.+|...|++++|++.|+++.+. .| +..++..++.+|.+.|++++|.++|++
T Consensus 389 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 389 ISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--FQGTHLPYLFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TTTCSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999999998729777899999999999757779999999999986--813438999999999985799999999999
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHC-------CCCCC--HHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 3642199767016788998610369979999999868-------99999--99899999999712880399999999985
Q 001763 857 MVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL-------TFEPD--SRIWTTLLGACGVHRDDIRGRLAAKKLIE 927 (1017)
Q Consensus 857 m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~-------~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~l~ 927 (1017)
+.+. .+.+...|.+++.+|.+.|++++|.++++++ +..|+ ..+|..++.+|..+|+.++|...++++++
T Consensus 467 ~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 467 SYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp HHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHH--CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 9984--88876799999999998189999999999999853234545354999999999999980479999999999997
Q ss_pred HCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf 0899970179787787726992799999999997699
Q 001763 928 LEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGV 964 (1017)
Q Consensus 928 ~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~ 964 (1017)
++|+++..+..++++|...|+|++|.+.++++.+...
T Consensus 545 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 545 LSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
T ss_conf 3899738999999999981789999999999972088
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=219.35 Aligned_cols=284 Identities=11% Similarity=0.051 Sum_probs=199.9
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC--CCCCEEEHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 88658998899988706991889999842999--9982130013210013799147999999999789886797699999
Q 001763 659 FDDDFLHIALLSMYMNSKRNTDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVL 736 (1017)
Q Consensus 659 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll 736 (1017)
|.+...+..++..+.+.|++++|.+.|+++.. |.+...|..+...+...|++++|.+.|+++.... +.+..++..+.
T Consensus 98 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 176 (388)
T 1w3b_A 98 PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLG 176 (388)
T ss_dssp TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_conf 65399999999999985899999999999997598968999999999998468999999999998729-89789999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHCCCHHH
Q ss_conf 99832176898999999999859998740685997678840998989999884168--8846879999999983899789
Q 001763 737 RACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAED 814 (1017)
Q Consensus 737 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 814 (1017)
..+...|++++|...++.+.+.++. +...+..++.++...|++++|...+++... |+....|..++..|...|++++
T Consensus 177 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 255 (388)
T 1w3b_A 177 CVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDL 255 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
T ss_conf 9999859999999999999855988-679999999999985789999999999985296878999999999998688999
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHC
Q ss_conf 99999998987999996-76999999704589689999999993642199767016788998610369979999999868
Q 001763 815 ALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL 893 (1017)
Q Consensus 815 A~~~~~~~~~~~~~pd~-~~~~~l~~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~ 893 (1017)
|++.++++.+. .|+. .++..+..++...|++++|...|+++++. .+.+...+..++.++.+.|++++|.+.++++
T Consensus 256 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 331 (388)
T 1w3b_A 256 AIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKA 331 (388)
T ss_dssp HHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999864--9998899999999999869979999999999864--9444999999999999848999999999999
Q ss_pred -CCCC-CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
Q ss_conf -9999-999899999999712880399999999985089997017978778772699
Q 001763 894 -TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGN 948 (1017)
Q Consensus 894 -~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~ 948 (1017)
...| +...|..++..+...|+.++|...++++++++|+++.++..++++|...|+
T Consensus 332 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 332 LEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 860987399997799999986888999999999986199978999859999987459
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=217.74 Aligned_cols=182 Identities=18% Similarity=0.195 Sum_probs=79.9
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC---------HHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 4999999987189913699999999858999896669999997304798---------3679999999999558998330
Q 001763 123 AWNSILSMYSKRGSFENVFKSFGLLCNRGGVPNGFTFAIVLSACSKSMD---------VSYGRQLHCHVIELGFESSSFC 193 (1017)
Q Consensus 123 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~~~ 193 (1017)
.++.+|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.+. ++.|.+++.+|.+.|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 99999999985989999999999999818998783999999999857830433321249999999999998089998999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCH
Q ss_conf 89999999819991027986505889990209999999998599227999999999839998863499999998603997
Q 001763 194 KGALIDMYAKLNNVSDARRVFDGAVDLDTVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRL 273 (1017)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 273 (1017)
|+++|. +|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++
T Consensus 108 yn~lI~-------------------------------~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~ 156 (501)
T 4g26_A 108 FTNGAR-------------------------------LAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDA 156 (501)
T ss_dssp HHHHHH-------------------------------HHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHH-------------------------------HHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCH
T ss_conf 999999-------------------------------9984697788999999999728988611104899999988899
Q ss_pred HHHHHHHHHCC----CCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf 89999998058----998201589999986069906799999999962899985149999998713
Q 001763 274 DEARELFAQMQ----NPNVVAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLSGISS 335 (1017)
Q Consensus 274 ~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 335 (1017)
++|.++|++|. .||..+|+.||.+|++.|+.++|.++|++|++.|..|+..||..++..++.
T Consensus 157 ~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 157 DKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf 999999999986299999999999999985389899999999999994899699999999999830
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=215.38 Aligned_cols=211 Identities=14% Similarity=0.106 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCC
Q ss_conf 699999999858999896-6699999973047983679999999999558998330899999998199910279865058
Q 001763 139 NVFKSFGLLCNRGGVPNG-FTFAIVLSACSKSMDVSYGRQLHCHVIELGFESSSFCKGALIDMYAKLNNVSDARRVFDGA 217 (1017)
Q Consensus 139 ~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 217 (1017)
.+..+.+.+.+.+....+ ..++.+|.+|++.|++++|..++++|.+.|+.||..+|++||.+|++.+....+.
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~------ 81 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESS------ 81 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSS------
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHH------
T ss_conf 59999999998266689799999999999859899999999999998189987839999999998578304333------
Q ss_pred CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCC----CCCCCHHH
Q ss_conf 89990209999999998599227999999999839998863499999998603997899999980589----98201589
Q 001763 218 VDLDTVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEARELFAQMQN----PNVVAWNV 293 (1017)
Q Consensus 218 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~ 293 (1017)
+.+..+.|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+ ||..+|+.
T Consensus 82 ----------------~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~ 145 (501)
T 4g26_A 82 ----------------PNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145 (501)
T ss_dssp ----------------CCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred ----------------HCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHH
T ss_conf ----------------2124999999999999808999899999999999846977889999999997289886111048
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
Q ss_conf 999986069906799999999962899985149999998713264137989999999949998522467999988716
Q 001763 294 MISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKC 371 (1017)
Q Consensus 294 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 371 (1017)
+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|+.++|..++++|...|..|+..+++.++..|+..
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
T ss_conf 999999888999999999999862999999999999999853898999999999999948996999999999998307
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=213.18 Aligned_cols=317 Identities=12% Similarity=0.085 Sum_probs=270.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC--CCCCEEEHHHHHHCCCCCCCHHH
Q ss_conf 0588751014699999998299888658998899988706991889999842999--99821300132100137991479
Q 001763 636 CDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYEA 713 (1017)
Q Consensus 636 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A 713 (1017)
+...++.+.+...+..+++.. |.+...+..++..|.+.|++++|...|+++.. |.+...|..++.++.+.|++++|
T Consensus 43 ~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 120 (388)
T 1w3b_A 43 HFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHH
T ss_pred HHHCCCHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH
T ss_conf 998689999999999997619--786699999999998779999999999999874965399999999999985899999
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCC
Q ss_conf 9999999978988679-769999999832176898999999999859998740685997678840998989999884168
Q 001763 714 LHFYREMRSHNVLPDQ-ATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE 792 (1017)
Q Consensus 714 ~~~~~~m~~~~~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 792 (1017)
+..|+++... .|+. ..+..+...+...|++++|...+..+.+..+. +...+..++.+|.+.|++++|...|+++..
T Consensus 121 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 197 (388)
T 1w3b_A 121 VQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197 (388)
T ss_dssp HHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999999975--9896899999999999846899999999999872989-789999999999985999999999999985
Q ss_pred --CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC-CH
Q ss_conf --884687999999998389978999999998987999996-76999999704589689999999993642199767-01
Q 001763 793 --RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPR-VD 868 (1017)
Q Consensus 793 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~pd~-~~~~~l~~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~ 868 (1017)
|+....|..++..+...|++++|+..++++.+. .|+. .++..+..++...|++++|...|+++++ ..|+ ..
T Consensus 198 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~ 272 (388)
T 1w3b_A 198 LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPD 272 (388)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHH
T ss_conf 59886799999999999857899999999999852--968789999999999986889999999999986---4999889
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHCC-C-CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 67889986103699799999998689-9-999998999999997128803999999999850899970179787787726
Q 001763 869 HCACMVDLLGRWGFLKEAEEFIEQLT-F-EPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAAL 946 (1017)
Q Consensus 869 ~~~~l~~~l~~~g~~~eA~~~~~~~~-~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~ 946 (1017)
.+..++.++.+.|++++|.+.++++. . +.+...|..+...+...|+.+.|...+++++++.|++...+..++.+|...
T Consensus 273 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 352 (388)
T 1w3b_A 273 AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ 352 (388)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
T ss_conf 99999999998699799999999998649444999999999999848999999999999860987399997799999986
Q ss_pred CCCHHHHHHHHHHHHC
Q ss_conf 9927999999999976
Q 001763 947 GNWNEVNTLRREMREK 962 (1017)
Q Consensus 947 g~~~~A~~~~~~~~~~ 962 (1017)
|++++|...++++.+.
T Consensus 353 g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 353 GKLQEALMHYKEAIRI 368 (388)
T ss_dssp TCCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHH
T ss_conf 8889999999999861
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=201.02 Aligned_cols=225 Identities=11% Similarity=-0.025 Sum_probs=103.2
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHC
Q ss_conf 9999999832176898999999999859998740685997678840998989999884168--88468799999999838
Q 001763 732 FVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKN 809 (1017)
Q Consensus 732 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~ 809 (1017)
+..+...+...|+++.|...++.+.+..+. ...+..++.+|...|++++|...++++.. ++....|..++..+...
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 999999999878999999999999863864--899999999999888899999999998613867789999999999980
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 9978999999998987999996-769999997045896899999999936421997670167889986103699799999
Q 001763 810 GYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEE 888 (1017)
Q Consensus 810 g~~~~A~~~~~~~~~~~~~pd~-~~~~~l~~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~ 888 (1017)
|++++|+..++++.+. .|+. ..+..+...+...|++++|...++.+++.. +.+...+..++.++.+.|++++|.+
T Consensus 318 ~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp TCTTHHHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 7799999999999873--85028999999999998689999999999999875--4677899999999987889999999
Q ss_pred HHHHCC----CCCC----HHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 998689----9999----9989999999971---2880399999999985089997017978778772699279999999
Q 001763 889 FIEQLT----FEPD----SRIWTTLLGACGV---HRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRR 957 (1017)
Q Consensus 889 ~~~~~~----~~p~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 957 (1017)
.++++. ..++ ...|..++..+.. .|+.+.|...++++++++|+++..+..++.+|...|++++|...++
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 99999976123321789999999999998663325888999999999987585558999999999998257999999999
Q ss_pred HHHHC
Q ss_conf 99976
Q 001763 958 EMREK 962 (1017)
Q Consensus 958 ~~~~~ 962 (1017)
++.+.
T Consensus 474 ~a~~~ 478 (514)
T 2gw1_A 474 ESADL 478 (514)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99876
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=198.55 Aligned_cols=221 Identities=12% Similarity=0.062 Sum_probs=180.8
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHCCCH
Q ss_conf 9999832176898999999999859998740685997678840998989999884168--88468799999999838997
Q 001763 735 VLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYA 812 (1017)
Q Consensus 735 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 812 (1017)
+...+...|++++|...++.+.+..+. +...+..++.+|.+.|++++|...++++.. ++....|..++..|...|++
T Consensus 149 ~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 227 (450)
T 2y4t_A 149 QALNAFGSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDH 227 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
T ss_conf 999999868999999999999986889-7699999999998779999999999999986889879999999999975999
Q ss_pred HHHHHHHHHHHHCCCCCCHH-HHHHH------------HHHCCCCCCHHHHHHHHHHHHHHCCCCCC--CHHHHHHHHHH
Q ss_conf 89999999989879999967-69999------------99704589689999999993642199767--01678899861
Q 001763 813 EDALKVFHEMKETQAMPDDV-TFLGV------------LTACSHAGRVSEGRQIFETMVSCHGIQPR--VDHCACMVDLL 877 (1017)
Q Consensus 813 ~~A~~~~~~~~~~~~~pd~~-~~~~l------------~~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~l 877 (1017)
++|+..++++.+. .|+.. .+..+ +.+|.+.|++++|...|+++++..+..|. ..++.+++.++
T Consensus 228 ~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~ 305 (450)
T 2y4t_A 228 ELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCF 305 (450)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 9999999999875--99808999999999999999999999987179999999999998508733689999999999999
Q ss_pred HCCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHH------------HHH
Q ss_conf 0369979999999868-9999-9998999999997128803999999999850899970179787------------787
Q 001763 878 GRWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLS------------NIY 943 (1017)
Q Consensus 878 ~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~l~------------~~y 943 (1017)
.+.|++++|++.++++ ...| +...|..++.+|...|+++.|...++++++++|+++..+..++ +.|
T Consensus 306 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y 385 (450)
T 2y4t_A 306 SKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYY 385 (450)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSG
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 98788999999999998848454899999999998703799999999999885935299999999999986433505699
Q ss_pred HHCC-----CCHHHHHHHHH
Q ss_conf 7269-----92799999999
Q 001763 944 AALG-----NWNEVNTLRRE 958 (1017)
Q Consensus 944 ~~~g-----~~~~A~~~~~~ 958 (1017)
...| +.+++.+.+++
T Consensus 386 ~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 386 KILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp GGSCSSTTCCTTHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHH
T ss_conf 98189866898999999999
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=192.64 Aligned_cols=237 Identities=9% Similarity=0.024 Sum_probs=144.4
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 32100137991479999999997898867976999999983217689899999999985999874068599767884099
Q 001763 700 VISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGD 779 (1017)
Q Consensus 700 li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 779 (1017)
++..+...|++++|+..++++... .|+...+..+...+...|++++|...++.+.+..+. +...+..++.+|...|+
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIEL--FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHCC
T ss_conf 999999878999999999999863--864899999999999888899999999998613867-78999999999998077
Q ss_pred HHHHHHHHHHCCC--CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 8989999884168--884687999999998389978999999998987999996-7699999970458968999999999
Q 001763 780 VKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFET 856 (1017)
Q Consensus 780 ~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~pd~-~~~~~l~~a~~~~g~~~~a~~~~~~ 856 (1017)
+++|...++++.. ++....|..++..+...|++++|+..++++.+. .|+. ..+..+...+...|++++|...+++
T Consensus 320 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999999998738502899999999999868999999999999987--546778999999999878899999999999
Q ss_pred HHHHCCCCCC----CHHHHHHHHHHHC---CCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 3642199767----0167889986103---69979999999868-9999-999899999999712880399999999985
Q 001763 857 MVSCHGIQPR----VDHCACMVDLLGR---WGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIE 927 (1017)
Q Consensus 857 m~~~~~~~p~----~~~~~~l~~~l~~---~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~ 927 (1017)
+.+.....+. ...+..++.++.+ .|++++|.+.++++ ...| +...|..++..+...|+.+.|...++++++
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99761233217899999999999986633258889999999999875855589999999999982579999999999987
Q ss_pred HCCCCCCHHHHHHH
Q ss_conf 08999701797877
Q 001763 928 LEPENPSPYVQLSN 941 (1017)
Q Consensus 928 ~~p~~~~~~~~l~~ 941 (1017)
++|.++..+..+..
T Consensus 478 ~~~~~~~~~~~~~~ 491 (514)
T 2gw1_A 478 LARTMEEKLQAITF 491 (514)
T ss_dssp HCSSHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHH
T ss_conf 66146889999999
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=184.76 Aligned_cols=233 Identities=11% Similarity=0.020 Sum_probs=155.0
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 32100137991479999999997898867976999999983217689899999999985999874068599767884099
Q 001763 700 VISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGD 779 (1017)
Q Consensus 700 li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 779 (1017)
++..+...|++++|+..+++.... .|+...+..+...+...|+++.|...+..+.+..+. +..++..++.+|...|+
T Consensus 249 ~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 325 (537)
T 3fp2_A 249 TGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQD 325 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCC
T ss_conf 999987545578999999999866--987469999999999803799999999997545999-87999999999986689
Q ss_pred HHHHHHHHHHCCC--CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 8989999884168--884687999999998389978999999998987999996-7699999970458968999999999
Q 001763 780 VKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFET 856 (1017)
Q Consensus 780 ~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~pd~-~~~~~l~~a~~~~g~~~~a~~~~~~ 856 (1017)
+++|...++++.. ++....|..++..+...|++++|+..++++.+. .|+. ..+..+...+...|++++|...|++
T Consensus 326 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 999999999999859997799999999999847799999999999873--999859999999999883788999999999
Q ss_pred HHHHCCCCCCC----HHHHHHHHHHHCC----------CCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 36421997670----1678899861036----------9979999999868-9999-99989999999971288039999
Q 001763 857 MVSCHGIQPRV----DHCACMVDLLGRW----------GFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRL 920 (1017)
Q Consensus 857 m~~~~~~~p~~----~~~~~l~~~l~~~----------g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 920 (1017)
+++.....+.. ..+...+.++.+. |++++|...++++ ...| +...|..++..+...|+.+.|..
T Consensus 404 a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 404 AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 98709762446888999998899999976401002247579999999999997499978999999999998514999999
Q ss_pred HHHHHHHHCCCCCCHHH
Q ss_conf 99999850899970179
Q 001763 921 AAKKLIELEPENPSPYV 937 (1017)
Q Consensus 921 ~~~~~l~~~p~~~~~~~ 937 (1017)
.+++++++.|.+.....
T Consensus 484 ~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 484 LFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHCCCCHHHHH
T ss_conf 99999986899388888
Done!