Query 001764
Match_columns 1016
No_of_seqs 722 out of 3527
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 08:47:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001764.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001764hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1032 Uncharacterized conser 100.0 1E-29 2.3E-34 298.2 15.6 288 698-1013 117-435 (590)
2 KOG1032 Uncharacterized conser 99.9 4E-27 8.6E-32 276.6 6.4 570 444-1014 4-582 (590)
3 KOG1028 Ca2+-dependent phospho 99.9 1.4E-21 3E-26 224.4 25.0 104 2-108 168-277 (421)
4 cd04016 C2_Tollip C2 domain pr 99.9 5.2E-21 1.1E-25 181.8 14.9 118 537-657 2-121 (121)
5 COG5038 Ca2+-dependent lipid-b 99.8 5.6E-19 1.2E-23 211.0 30.1 123 535-658 1038-1161(1227)
6 cd04016 C2_Tollip C2 domain pr 99.8 6.7E-20 1.5E-24 174.2 15.7 117 2-125 3-121 (121)
7 cd08682 C2_Rab11-FIP_classI C2 99.8 1.1E-19 2.4E-24 175.8 13.6 117 539-656 1-126 (126)
8 cd08682 C2_Rab11-FIP_classI C2 99.8 1.9E-19 4.2E-24 174.2 14.7 119 3-123 1-125 (126)
9 cd04019 C2C_MCTP_PRT_plant C2 99.8 4.2E-19 9.1E-24 176.0 15.0 123 539-662 2-136 (150)
10 cd08376 C2B_MCTP_PRT C2 domain 99.8 8.6E-19 1.9E-23 167.1 15.8 115 538-658 1-115 (116)
11 cd04042 C2A_MCTP_PRT C2 domain 99.8 9.1E-19 2E-23 168.2 16.0 118 539-658 2-120 (121)
12 cd08379 C2D_MCTP_PRT_plant C2 99.8 1.3E-18 2.8E-23 166.5 14.3 113 539-653 2-125 (126)
13 cd04022 C2A_MCTP_PRT_plant C2 99.8 1.7E-18 3.6E-23 167.8 14.5 121 2-126 1-126 (127)
14 cd08681 C2_fungal_Inn1p-like C 99.8 8.6E-19 1.9E-23 167.6 12.3 117 537-657 1-118 (118)
15 cd04019 C2C_MCTP_PRT_plant C2 99.8 3.6E-18 7.9E-23 169.3 17.0 126 3-128 2-134 (150)
16 cd04022 C2A_MCTP_PRT_plant C2 99.8 1.6E-18 3.5E-23 168.0 13.5 119 539-658 2-126 (127)
17 cd04042 C2A_MCTP_PRT C2 domain 99.8 3.7E-18 7.9E-23 164.0 15.7 120 2-127 1-121 (121)
18 cd04036 C2_cPLA2 C2 domain pre 99.8 2.3E-18 5.1E-23 164.8 14.2 114 539-658 2-118 (119)
19 cd08379 C2D_MCTP_PRT_plant C2 99.8 2.9E-18 6.3E-23 164.1 14.2 115 3-121 2-125 (126)
20 cd08395 C2C_Munc13 C2 domain t 99.8 3E-18 6.6E-23 162.5 13.2 102 539-642 2-113 (120)
21 cd04024 C2A_Synaptotagmin-like 99.8 3.6E-18 7.9E-23 165.8 13.8 120 537-657 1-128 (128)
22 cd08375 C2_Intersectin C2 doma 99.8 8.1E-18 1.8E-22 164.4 15.3 118 535-657 13-135 (136)
23 cd08391 C2A_C2C_Synaptotagmin_ 99.8 5.6E-18 1.2E-22 162.8 14.0 115 537-657 1-121 (121)
24 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 5.1E-18 1.1E-22 162.6 13.5 117 539-657 2-121 (121)
25 cd04024 C2A_Synaptotagmin-like 99.8 9.1E-18 2E-22 163.0 15.3 124 2-125 2-128 (128)
26 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 1E-17 2.2E-22 160.5 15.1 118 3-125 2-121 (121)
27 cd08378 C2B_MCTP_PRT_plant C2 99.8 1E-17 2.2E-22 160.5 14.0 116 3-126 2-120 (121)
28 KOG1030 Predicted Ca2+-depende 99.7 3.3E-18 7.1E-23 165.3 9.3 94 536-631 5-98 (168)
29 cd08378 C2B_MCTP_PRT_plant C2 99.7 1.3E-17 2.9E-22 159.6 13.4 113 539-657 2-119 (121)
30 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 1.7E-17 3.6E-22 159.9 14.1 116 539-655 2-122 (123)
31 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 2.1E-17 4.6E-22 161.5 14.8 122 2-125 1-132 (133)
32 cd08400 C2_Ras_p21A1 C2 domain 99.7 3.3E-17 7.1E-22 158.3 15.8 116 538-658 5-123 (126)
33 cd08678 C2_C21orf25-like C2 do 99.7 2.3E-17 4.9E-22 159.6 14.5 118 539-660 1-122 (126)
34 cd04015 C2_plant_PLD C2 domain 99.7 3.1E-17 6.8E-22 164.4 15.9 118 537-657 7-157 (158)
35 cd04017 C2D_Ferlin C2 domain f 99.7 3.9E-17 8.4E-22 159.9 16.1 122 2-128 2-134 (135)
36 cd08681 C2_fungal_Inn1p-like C 99.7 1.9E-17 4E-22 158.4 13.2 115 2-125 2-118 (118)
37 cd08678 C2_C21orf25-like C2 do 99.7 4.3E-17 9.4E-22 157.7 15.7 120 3-128 1-122 (126)
38 KOG2059 Ras GTPase-activating 99.7 2.7E-17 6E-22 186.8 16.4 119 2-126 6-125 (800)
39 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 5.1E-17 1.1E-21 156.5 15.3 119 2-123 1-122 (123)
40 cd04046 C2_Calpain C2 domain p 99.7 8.2E-17 1.8E-21 155.6 16.4 120 3-128 5-124 (126)
41 cd08376 C2B_MCTP_PRT C2 domain 99.7 6.8E-17 1.5E-21 154.0 15.6 113 3-126 2-115 (116)
42 KOG1030 Predicted Ca2+-depende 99.7 1.4E-17 3.1E-22 160.9 10.8 91 2-92 7-97 (168)
43 cd08381 C2B_PI3K_class_II C2 d 99.7 2.1E-17 4.5E-22 158.6 11.8 102 536-639 12-121 (122)
44 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 5.2E-17 1.1E-21 155.8 14.3 116 539-656 2-120 (121)
45 cd08375 C2_Intersectin C2 doma 99.7 8.6E-17 1.9E-21 157.1 15.9 117 2-125 16-135 (136)
46 cd04010 C2B_RasA3 C2 domain se 99.7 2.5E-17 5.4E-22 162.4 12.2 101 539-642 2-123 (148)
47 cd08377 C2C_MCTP_PRT C2 domain 99.7 1.1E-16 2.3E-21 153.4 16.1 117 2-125 2-118 (119)
48 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 4.5E-17 9.8E-22 159.2 13.6 117 539-657 2-132 (133)
49 cd08377 C2C_MCTP_PRT C2 domain 99.7 9.3E-17 2E-21 153.8 15.2 117 537-657 1-118 (119)
50 cd04010 C2B_RasA3 C2 domain se 99.7 3.5E-17 7.5E-22 161.4 12.4 118 2-123 1-147 (148)
51 cd04043 C2_Munc13_fungal C2 do 99.7 9.6E-17 2.1E-21 155.4 15.0 118 538-662 2-125 (126)
52 cd08677 C2A_Synaptotagmin-13 C 99.7 3.2E-17 6.9E-22 153.3 10.8 101 535-639 12-118 (118)
53 cd04050 C2B_Synaptotagmin-like 99.7 5.6E-17 1.2E-21 151.5 12.3 100 539-642 2-103 (105)
54 cd04028 C2B_RIM1alpha C2 domai 99.7 7.7E-17 1.7E-21 157.9 13.3 106 537-644 29-141 (146)
55 cd04014 C2_PKC_epsilon C2 doma 99.7 1.7E-16 3.8E-21 154.8 15.6 114 537-659 4-130 (132)
56 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 2.1E-16 4.5E-21 151.7 15.6 118 3-124 2-120 (121)
57 cd04027 C2B_Munc13 C2 domain s 99.7 1.5E-16 3.4E-21 153.9 14.8 115 2-123 2-127 (127)
58 cd08394 C2A_Munc13 C2 domain f 99.7 1.2E-16 2.6E-21 150.8 13.1 100 2-107 3-102 (127)
59 cd08381 C2B_PI3K_class_II C2 d 99.7 8.5E-17 1.8E-21 154.3 12.4 99 2-104 14-121 (122)
60 cd08395 C2C_Munc13 C2 domain t 99.7 9E-17 2E-21 152.4 12.3 102 2-107 1-113 (120)
61 cd08400 C2_Ras_p21A1 C2 domain 99.7 3.6E-16 7.8E-21 151.1 16.8 118 2-127 5-124 (126)
62 cd04027 C2B_Munc13 C2 domain s 99.7 1.7E-16 3.6E-21 153.7 13.7 115 538-655 2-127 (127)
63 cd08382 C2_Smurf-like C2 domai 99.7 2.1E-16 4.5E-21 152.2 14.2 119 2-123 1-122 (123)
64 cd04017 C2D_Ferlin C2 domain f 99.7 2.3E-16 4.9E-21 154.5 14.6 118 538-658 2-132 (135)
65 cd08373 C2A_Ferlin C2 domain f 99.7 2.8E-16 6E-21 152.3 14.9 117 543-662 2-120 (127)
66 cd04015 C2_plant_PLD C2 domain 99.7 4.8E-16 1E-20 155.9 16.7 119 2-125 8-157 (158)
67 cd04046 C2_Calpain C2 domain p 99.7 4.7E-16 1E-20 150.3 16.0 118 536-658 2-122 (126)
68 cd08688 C2_KIAA0528-like C2 do 99.7 1E-16 2.2E-21 151.1 10.9 101 539-640 1-108 (110)
69 cd08677 C2A_Synaptotagmin-13 C 99.7 1.3E-16 2.8E-21 149.2 11.4 97 2-104 15-118 (118)
70 cd08392 C2A_SLP-3 C2 domain fi 99.7 1.4E-16 3E-21 153.9 12.0 104 2-105 16-128 (128)
71 cd04028 C2B_RIM1alpha C2 domai 99.7 2.2E-16 4.7E-21 154.8 13.3 104 2-108 30-140 (146)
72 cd04036 C2_cPLA2 C2 domain pre 99.7 3E-16 6.4E-21 150.3 14.0 113 3-126 2-118 (119)
73 cd04029 C2A_SLP-4_5 C2 domain 99.7 1.7E-16 3.8E-21 152.9 11.9 105 535-640 13-125 (125)
74 cd08688 C2_KIAA0528-like C2 do 99.7 2.2E-16 4.8E-21 148.8 12.3 104 3-106 1-109 (110)
75 cd08393 C2A_SLP-1_2 C2 domain 99.7 1.6E-16 3.4E-21 153.4 11.2 104 536-640 14-125 (125)
76 cd04050 C2B_Synaptotagmin-like 99.7 3.1E-16 6.7E-21 146.5 12.3 101 3-107 2-103 (105)
77 cd08385 C2A_Synaptotagmin-1-5- 99.7 3.4E-16 7.3E-21 151.1 12.5 105 535-640 14-123 (124)
78 cd04041 C2A_fungal C2 domain f 99.7 1.8E-16 3.8E-21 149.8 10.0 100 537-640 1-107 (111)
79 cd08387 C2A_Synaptotagmin-8 C2 99.7 3.3E-16 7.2E-21 151.1 12.1 105 535-640 14-123 (124)
80 cd04039 C2_PSD C2 domain prese 99.7 3E-16 6.4E-21 146.9 11.3 94 537-631 1-99 (108)
81 cd04018 C2C_Ferlin C2 domain t 99.7 3.4E-16 7.3E-21 154.6 12.2 103 539-642 2-126 (151)
82 cd08382 C2_Smurf-like C2 domai 99.7 4.3E-16 9.2E-21 150.0 12.5 114 539-655 2-122 (123)
83 cd08393 C2A_SLP-1_2 C2 domain 99.7 3.9E-16 8.4E-21 150.6 11.8 101 2-105 16-125 (125)
84 cd08392 C2A_SLP-3 C2 domain fi 99.7 5.2E-16 1.1E-20 149.9 12.0 104 536-640 14-128 (128)
85 cd04040 C2D_Tricalbin-like C2 99.7 8.7E-16 1.9E-20 146.1 13.3 113 539-653 1-114 (115)
86 cd04031 C2A_RIM1alpha C2 domai 99.7 6.2E-16 1.3E-20 149.5 12.2 103 536-640 15-125 (125)
87 cd08685 C2_RGS-like C2 domain 99.7 4E-16 8.8E-21 148.8 10.7 102 536-639 11-119 (119)
88 cd08391 C2A_C2C_Synaptotagmin_ 99.7 1.3E-15 2.8E-20 146.3 14.3 113 2-125 2-121 (121)
89 cd04018 C2C_Ferlin C2 domain t 99.7 9.1E-16 2E-20 151.6 12.9 107 2-108 1-127 (151)
90 cd08394 C2A_Munc13 C2 domain f 99.7 1.1E-15 2.4E-20 144.3 12.6 98 537-641 2-101 (127)
91 cd08373 C2A_Ferlin C2 domain f 99.6 2.2E-15 4.9E-20 146.0 15.3 116 7-130 2-120 (127)
92 cd04043 C2_Munc13_fungal C2 do 99.6 3.2E-15 7E-20 144.7 16.2 118 2-128 2-123 (126)
93 cd08386 C2A_Synaptotagmin-7 C2 99.6 1.3E-15 2.8E-20 147.3 13.2 105 535-640 14-124 (125)
94 cd04011 C2B_Ferlin C2 domain s 99.6 1E-15 2.2E-20 144.6 12.2 101 2-106 5-110 (111)
95 cd04044 C2A_Tricalbin-like C2 99.6 1.4E-15 3.1E-20 146.6 13.4 118 537-658 2-123 (124)
96 cd04029 C2A_SLP-4_5 C2 domain 99.6 1.2E-15 2.7E-20 146.9 12.7 101 2-105 16-125 (125)
97 cd04030 C2C_KIAA1228 C2 domain 99.6 1.6E-15 3.5E-20 147.0 12.9 105 535-640 14-127 (127)
98 cd04051 C2_SRC2_like C2 domain 99.6 9.2E-16 2E-20 148.2 10.8 113 539-653 2-125 (125)
99 cd08388 C2A_Synaptotagmin-4-11 99.6 2.1E-15 4.5E-20 146.0 13.1 105 535-640 14-127 (128)
100 cd04014 C2_PKC_epsilon C2 doma 99.6 5.9E-15 1.3E-19 144.0 16.3 115 2-127 5-130 (132)
101 cd04044 C2A_Tricalbin-like C2 99.6 2.9E-15 6.2E-20 144.5 13.8 119 2-127 3-124 (124)
102 cd04051 C2_SRC2_like C2 domain 99.6 1.5E-15 3.2E-20 146.8 11.5 116 2-121 1-125 (125)
103 cd08690 C2_Freud-1 C2 domain f 99.6 5.2E-15 1.1E-19 146.1 15.2 120 539-660 4-139 (155)
104 KOG0696 Serine/threonine prote 99.6 1.3E-16 2.9E-21 171.5 4.0 126 515-642 151-289 (683)
105 cd08685 C2_RGS-like C2 domain 99.6 2E-15 4.2E-20 144.1 11.6 99 2-104 13-119 (119)
106 cd04011 C2B_Ferlin C2 domain s 99.6 2E-15 4.3E-20 142.6 11.5 100 537-641 4-110 (111)
107 cd08680 C2_Kibra C2 domain fou 99.6 1.9E-15 4E-20 144.7 11.4 104 535-639 12-124 (124)
108 cd04049 C2_putative_Elicitor-r 99.6 2.5E-15 5.4E-20 145.0 12.0 105 537-642 1-109 (124)
109 cd04031 C2A_RIM1alpha C2 domai 99.6 2.9E-15 6.3E-20 144.7 12.4 101 1-105 16-125 (125)
110 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.6 2.5E-15 5.4E-20 151.2 12.2 106 535-641 25-138 (162)
111 cd08680 C2_Kibra C2 domain fou 99.6 2.5E-15 5.4E-20 143.9 11.4 101 2-104 15-124 (124)
112 cd08691 C2_NEDL1-like C2 domai 99.6 8.9E-15 1.9E-19 142.4 15.5 119 1-123 1-136 (137)
113 cd04039 C2_PSD C2 domain prese 99.6 3.8E-15 8.2E-20 139.4 12.4 91 2-92 2-98 (108)
114 cd04041 C2A_fungal C2 domain f 99.6 2.1E-15 4.5E-20 142.4 10.7 99 2-106 2-108 (111)
115 cd08521 C2A_SLP C2 domain firs 99.6 2.6E-15 5.5E-20 144.7 11.6 104 535-639 12-123 (123)
116 cd08387 C2A_Synaptotagmin-8 C2 99.6 3.7E-15 8E-20 143.8 12.5 101 2-105 17-123 (124)
117 cd08388 C2A_Synaptotagmin-4-11 99.6 4.3E-15 9.2E-20 143.8 12.9 104 2-106 17-128 (128)
118 cd08386 C2A_Synaptotagmin-7 C2 99.6 5.1E-15 1.1E-19 143.1 13.1 103 1-106 16-125 (125)
119 cd08390 C2A_Synaptotagmin-15-1 99.6 4.9E-15 1.1E-19 142.7 12.9 105 535-640 12-122 (123)
120 cd04045 C2C_Tricalbin-like C2 99.6 4.1E-15 8.9E-20 142.2 12.2 103 537-642 1-104 (120)
121 cd08385 C2A_Synaptotagmin-1-5- 99.6 5.6E-15 1.2E-19 142.5 13.2 101 2-105 17-123 (124)
122 cd08676 C2A_Munc13-like C2 dom 99.6 3.6E-15 7.7E-20 147.6 11.6 99 535-639 26-153 (153)
123 cd08675 C2B_RasGAP C2 domain s 99.6 3.5E-15 7.6E-20 146.1 11.4 103 539-643 1-122 (137)
124 cd08389 C2A_Synaptotagmin-14_1 99.6 5.1E-15 1.1E-19 142.5 12.4 104 535-640 14-123 (124)
125 cd04038 C2_ArfGAP C2 domain pr 99.6 5.5E-15 1.2E-19 145.4 11.8 91 537-630 2-92 (145)
126 cd08389 C2A_Synaptotagmin-14_1 99.6 6.9E-15 1.5E-19 141.6 12.3 102 1-106 16-124 (124)
127 cd04032 C2_Perforin C2 domain 99.6 5.5E-15 1.2E-19 141.7 11.2 92 535-628 26-118 (127)
128 cd04013 C2_SynGAP_like C2 doma 99.6 2.3E-14 5E-19 140.0 15.6 119 2-128 12-141 (146)
129 cd04030 C2C_KIAA1228 C2 domain 99.6 1.2E-14 2.6E-19 140.9 13.1 101 2-105 17-127 (127)
130 cd04013 C2_SynGAP_like C2 doma 99.6 2.4E-14 5.2E-19 139.9 14.6 117 538-660 12-141 (146)
131 cd08691 C2_NEDL1-like C2 domai 99.6 2.8E-14 6.1E-19 138.9 14.6 114 538-655 2-136 (137)
132 cd04037 C2E_Ferlin C2 domain f 99.6 9E-15 1.9E-19 140.9 10.7 89 539-628 2-92 (124)
133 cd04049 C2_putative_Elicitor-r 99.6 1.9E-14 4E-19 138.9 12.8 104 2-108 2-110 (124)
134 KOG0696 Serine/threonine prote 99.6 9.4E-16 2E-20 165.0 4.1 102 2-107 181-289 (683)
135 cd08521 C2A_SLP C2 domain firs 99.6 1.9E-14 4.1E-19 138.6 12.6 100 2-104 15-123 (123)
136 cd04021 C2_E3_ubiquitin_ligase 99.6 4.2E-14 9.1E-19 136.4 14.7 119 2-123 3-124 (125)
137 cd08690 C2_Freud-1 C2 domain f 99.6 4.8E-14 1E-18 139.2 15.4 119 3-128 4-139 (155)
138 cd04045 C2C_Tricalbin-like C2 99.6 2.5E-14 5.4E-19 136.8 12.8 103 2-108 2-105 (120)
139 cd08383 C2A_RasGAP C2 domain ( 99.6 4E-14 8.7E-19 135.1 13.8 112 3-125 2-117 (117)
140 cd04009 C2B_Munc13-like C2 dom 99.6 1.7E-14 3.6E-19 140.9 11.4 94 2-95 17-122 (133)
141 cd04038 C2_ArfGAP C2 domain pr 99.6 2.3E-14 5.1E-19 141.0 12.4 90 2-92 3-92 (145)
142 cd08675 C2B_RasGAP C2 domain s 99.6 2.1E-14 4.6E-19 140.6 11.8 102 3-108 1-122 (137)
143 cd04021 C2_E3_ubiquitin_ligase 99.6 3.8E-14 8.3E-19 136.7 13.4 114 538-655 3-124 (125)
144 cd04052 C2B_Tricalbin-like C2 99.6 2.2E-14 4.7E-19 135.4 11.2 99 554-658 9-109 (111)
145 cd08384 C2B_Rabphilin_Doc2 C2 99.6 6.6E-15 1.4E-19 143.9 7.7 105 535-642 11-122 (133)
146 cd08406 C2B_Synaptotagmin-12 C 99.5 3.1E-14 6.6E-19 138.8 12.1 101 537-640 15-122 (136)
147 cd08390 C2A_Synaptotagmin-15-1 99.5 4.2E-14 9.1E-19 136.2 12.7 102 2-106 15-123 (123)
148 cd08383 C2A_RasGAP C2 domain ( 99.5 7.4E-14 1.6E-18 133.2 14.0 112 539-657 2-117 (117)
149 cd04032 C2_Perforin C2 domain 99.5 2.8E-14 6E-19 136.9 10.9 88 2-90 29-118 (127)
150 cd00275 C2_PLC_like C2 domain 99.5 8.2E-14 1.8E-18 135.2 14.4 115 538-657 3-127 (128)
151 cd04026 C2_PKC_alpha_gamma C2 99.5 4.1E-14 9E-19 137.9 11.7 104 537-642 13-122 (131)
152 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.5 4.7E-14 1E-18 142.0 12.2 102 2-106 28-138 (162)
153 cd04040 C2D_Tricalbin-like C2 99.5 8.2E-14 1.8E-18 132.5 13.2 112 3-121 1-114 (115)
154 cd08404 C2B_Synaptotagmin-4 C2 99.5 1.3E-14 2.7E-19 142.4 7.7 104 536-642 14-124 (136)
155 PLN03008 Phospholipase D delta 99.5 6.7E-14 1.5E-18 166.3 15.1 122 537-661 14-180 (868)
156 cd08407 C2B_Synaptotagmin-13 C 99.5 3.2E-14 7E-19 138.5 10.1 101 536-639 14-123 (138)
157 cd00275 C2_PLC_like C2 domain 99.5 1.7E-13 3.7E-18 133.0 15.2 116 1-125 2-127 (128)
158 cd04048 C2A_Copine C2 domain f 99.5 3.5E-14 7.5E-19 136.1 10.2 98 543-640 6-113 (120)
159 cd08676 C2A_Munc13-like C2 dom 99.5 5.4E-14 1.2E-18 139.2 11.5 96 1-104 28-153 (153)
160 cd08406 C2B_Synaptotagmin-12 C 99.5 6.1E-14 1.3E-18 136.7 11.6 101 2-107 16-124 (136)
161 cd04009 C2B_Munc13-like C2 dom 99.5 5.5E-14 1.2E-18 137.3 11.0 92 537-629 16-118 (133)
162 cd08405 C2B_Synaptotagmin-7 C2 99.5 7.7E-14 1.7E-18 136.9 11.6 104 535-641 13-123 (136)
163 cd04037 C2E_Ferlin C2 domain f 99.5 7.3E-14 1.6E-18 134.6 11.2 88 3-90 2-92 (124)
164 cd08402 C2B_Synaptotagmin-1 C2 99.5 7.2E-14 1.6E-18 137.1 11.4 104 535-641 13-123 (136)
165 cd08407 C2B_Synaptotagmin-13 C 99.5 9.7E-14 2.1E-18 135.2 11.4 87 2-88 16-112 (138)
166 cd08410 C2B_Synaptotagmin-17 C 99.5 8.2E-14 1.8E-18 136.3 10.9 106 535-642 12-124 (135)
167 cd08404 C2B_Synaptotagmin-4 C2 99.5 4.3E-14 9.3E-19 138.7 8.7 103 1-108 15-125 (136)
168 cd08384 C2B_Rabphilin_Doc2 C2 99.5 1.1E-13 2.4E-18 135.2 11.2 102 2-108 14-123 (133)
169 cd08692 C2B_Tac2-N C2 domain s 99.5 1.4E-13 3E-18 132.0 10.9 103 535-639 12-121 (135)
170 cd04026 C2_PKC_alpha_gamma C2 99.5 1.8E-13 3.9E-18 133.3 11.8 102 2-107 14-122 (131)
171 cd08402 C2B_Synaptotagmin-1 C2 99.5 1.4E-13 3.1E-18 135.0 10.9 101 2-107 16-124 (136)
172 KOG1011 Neurotransmitter relea 99.5 5.5E-14 1.2E-18 156.9 8.8 122 535-659 293-425 (1283)
173 PLN03008 Phospholipase D delta 99.5 2.8E-13 6E-18 161.1 14.9 107 20-131 75-182 (868)
174 cd08686 C2_ABR C2 domain in th 99.5 4.9E-13 1.1E-17 124.7 13.4 94 539-640 1-108 (118)
175 cd08403 C2B_Synaptotagmin-3-5- 99.5 5E-14 1.1E-18 137.9 7.0 104 535-641 12-122 (134)
176 cd04035 C2A_Rabphilin_Doc2 C2 99.5 3.2E-13 6.9E-18 130.1 12.3 103 535-639 13-123 (123)
177 cd04052 C2B_Tricalbin-like C2 99.5 3.5E-13 7.7E-18 127.2 12.2 100 18-127 9-110 (111)
178 cd08408 C2B_Synaptotagmin-14_1 99.5 2.4E-13 5.3E-18 133.1 11.3 102 2-107 16-126 (138)
179 cd08405 C2B_Synaptotagmin-7 C2 99.5 3.2E-13 7E-18 132.5 12.3 102 1-107 15-124 (136)
180 cd08408 C2B_Synaptotagmin-14_1 99.5 2.4E-13 5.3E-18 133.1 10.9 104 535-640 13-124 (138)
181 PF02893 GRAM: GRAM domain; I 99.5 4.8E-14 1E-18 120.7 5.1 67 690-756 1-69 (69)
182 cd04048 C2A_Copine C2 domain f 99.5 2.9E-13 6.4E-18 129.7 10.8 97 7-106 6-114 (120)
183 cd00276 C2B_Synaptotagmin C2 d 99.5 9.3E-14 2E-18 135.9 7.5 104 536-642 13-123 (134)
184 PLN03200 cellulose synthase-in 99.5 2.1E-13 4.4E-18 176.7 12.3 120 534-659 1977-2101(2102)
185 cd08692 C2B_Tac2-N C2 domain s 99.4 5.3E-13 1.1E-17 128.1 11.7 88 2-89 15-110 (135)
186 cd08410 C2B_Synaptotagmin-17 C 99.4 2.3E-13 4.9E-18 133.2 8.2 103 2-108 15-125 (135)
187 cd08403 C2B_Synaptotagmin-3-5- 99.4 8.6E-13 1.9E-17 129.1 12.2 103 1-108 14-124 (134)
188 KOG1028 Ca2+-dependent phospho 99.4 7.5E-13 1.6E-17 152.6 13.5 126 538-664 168-300 (421)
189 KOG1011 Neurotransmitter relea 99.4 2.5E-13 5.5E-18 151.6 8.9 124 2-132 296-430 (1283)
190 cd08409 C2B_Synaptotagmin-15 C 99.4 9.3E-13 2E-17 129.1 11.9 101 2-106 16-124 (137)
191 cd08409 C2B_Synaptotagmin-15 C 99.4 2.5E-13 5.3E-18 133.2 7.1 103 536-640 14-123 (137)
192 cd00276 C2B_Synaptotagmin C2 d 99.4 3.3E-13 7.1E-18 132.0 7.4 102 2-108 15-124 (134)
193 cd08686 C2_ABR C2 domain in th 99.4 1.4E-12 3.1E-17 121.6 10.5 80 3-88 1-92 (118)
194 cd04035 C2A_Rabphilin_Doc2 C2 99.4 2.5E-12 5.4E-17 123.8 12.2 90 2-92 16-114 (123)
195 KOG1326 Membrane-associated pr 99.4 2.5E-13 5.3E-18 160.2 5.5 89 537-626 613-703 (1105)
196 cd04047 C2B_Copine C2 domain s 99.4 2.5E-12 5.3E-17 121.3 10.8 88 541-630 4-101 (110)
197 cd04047 C2B_Copine C2 domain s 99.3 5.1E-12 1.1E-16 119.2 11.2 87 4-91 3-100 (110)
198 PF00168 C2: C2 domain; Inter 99.3 4.7E-12 1E-16 112.8 10.4 82 539-621 1-85 (85)
199 smart00568 GRAM domain in gluc 99.3 2.5E-12 5.4E-17 107.3 5.5 59 698-756 2-61 (61)
200 PLN03200 cellulose synthase-in 99.3 6.4E-12 1.4E-16 163.1 11.3 114 2-126 1981-2100(2102)
201 PF00168 C2: C2 domain; Inter 99.3 1.8E-11 3.8E-16 109.1 10.2 81 3-83 1-85 (85)
202 KOG2059 Ras GTPase-activating 99.2 2.4E-11 5.2E-16 139.1 9.1 119 539-660 7-127 (800)
203 PLN02223 phosphoinositide phos 99.2 1.6E-10 3.5E-15 133.0 14.1 117 537-657 409-536 (537)
204 cd00030 C2 C2 domain. The C2 d 99.2 1.4E-10 3E-15 106.0 10.8 100 539-639 1-102 (102)
205 smart00239 C2 Protein kinase C 99.1 5.1E-10 1.1E-14 102.6 10.5 93 539-632 2-97 (101)
206 cd00030 C2 C2 domain. The C2 d 99.1 9.1E-10 2E-14 100.5 11.5 100 3-104 1-102 (102)
207 PLN02223 phosphoinositide phos 99.1 1.7E-09 3.7E-14 124.7 15.3 116 2-125 410-536 (537)
208 smart00239 C2 Protein kinase C 99.0 1.7E-09 3.6E-14 99.1 11.3 90 2-91 1-94 (101)
209 KOG1328 Synaptic vesicle prote 99.0 6E-11 1.3E-15 135.1 1.6 130 535-665 112-308 (1103)
210 PLN02952 phosphoinositide phos 99.0 1.9E-09 4E-14 127.2 13.9 117 537-657 470-598 (599)
211 PLN02270 phospholipase D alpha 99.0 1.8E-09 3.9E-14 129.2 13.7 121 537-660 8-150 (808)
212 cd08374 C2F_Ferlin C2 domain s 99.0 1.7E-09 3.6E-14 104.0 10.1 92 539-631 2-125 (133)
213 cd08374 C2F_Ferlin C2 domain s 99.0 2.2E-09 4.8E-14 103.2 10.7 91 2-92 1-124 (133)
214 PLN02230 phosphoinositide phos 99.0 2.5E-09 5.5E-14 125.7 12.8 118 536-657 468-597 (598)
215 PLN02952 phosphoinositide phos 99.0 5.5E-09 1.2E-13 123.2 15.4 116 2-125 471-598 (599)
216 COG5038 Ca2+-dependent lipid-b 99.0 1.7E-09 3.6E-14 131.1 11.0 133 484-629 393-529 (1227)
217 KOG0169 Phosphoinositide-speci 99.0 2.9E-09 6.3E-14 124.7 11.7 117 538-658 617-744 (746)
218 PLN02270 phospholipase D alpha 98.9 1.2E-08 2.7E-13 122.2 15.2 125 2-131 9-153 (808)
219 PLN02230 phosphoinositide phos 98.9 1.3E-08 2.8E-13 119.9 14.3 116 2-125 470-597 (598)
220 PLN02222 phosphoinositide phos 98.9 1.3E-08 2.8E-13 119.8 13.6 117 537-657 452-580 (581)
221 PLN02222 phosphoinositide phos 98.9 2.6E-08 5.6E-13 117.2 15.2 116 2-125 453-580 (581)
222 PLN02228 Phosphoinositide phos 98.8 2.3E-08 4.9E-13 117.4 13.8 119 537-659 431-562 (567)
223 PLN02228 Phosphoinositide phos 98.8 3.7E-08 8E-13 115.6 15.1 118 2-127 432-562 (567)
224 KOG0169 Phosphoinositide-speci 98.8 2.3E-08 4.9E-13 117.4 11.9 117 2-126 617-744 (746)
225 KOG1031 Predicted Ca2+-depende 98.8 1.1E-08 2.4E-13 114.0 8.2 125 537-663 3-141 (1169)
226 KOG1264 Phospholipase C [Lipid 98.8 2.8E-08 6E-13 115.0 10.4 124 536-664 1064-1195(1267)
227 KOG1328 Synaptic vesicle prote 98.7 3.5E-09 7.5E-14 121.1 2.1 94 535-629 945-1049(1103)
228 KOG1264 Phospholipase C [Lipid 98.7 7.5E-08 1.6E-12 111.6 11.4 119 1-128 1065-1191(1267)
229 cd08689 C2_fungal_Pkc1p C2 dom 98.7 5.9E-08 1.3E-12 87.5 8.2 83 539-628 1-87 (109)
230 KOG1031 Predicted Ca2+-depende 98.7 4.9E-08 1.1E-12 108.9 8.2 121 2-126 4-136 (1169)
231 cd08689 C2_fungal_Pkc1p C2 dom 98.7 1E-07 2.3E-12 85.9 8.6 84 3-91 1-88 (109)
232 KOG1013 Synaptic vesicle prote 98.5 2E-08 4.3E-13 106.7 0.8 158 2-167 94-263 (362)
233 PLN02352 phospholipase D epsil 98.4 1.8E-06 4E-11 103.7 12.8 116 537-661 10-133 (758)
234 PLN02352 phospholipase D epsil 98.2 1.2E-05 2.7E-10 96.8 13.4 118 2-131 11-135 (758)
235 KOG1326 Membrane-associated pr 97.9 5.2E-06 1.1E-10 99.6 3.4 87 2-88 614-703 (1105)
236 KOG0905 Phosphoinositide 3-kin 97.8 2E-05 4.4E-10 95.5 4.9 102 2-106 1525-1635(1639)
237 PLN02964 phosphatidylserine de 97.7 5.5E-05 1.2E-09 90.8 6.8 93 532-632 49-142 (644)
238 KOG1013 Synaptic vesicle prote 97.7 4.9E-05 1.1E-09 81.4 5.4 85 2-86 234-326 (362)
239 KOG0905 Phosphoinositide 3-kin 97.6 4.6E-05 9.9E-10 92.6 4.9 105 536-641 1523-1635(1639)
240 KOG4347 GTPase-activating prot 97.2 0.0002 4.3E-09 83.3 3.6 105 685-812 6-113 (671)
241 KOG2060 Rab3 effector RIM1 and 97.1 0.0004 8.7E-09 75.8 3.8 105 2-108 270-381 (405)
242 cd08683 C2_C2cd3 C2 domain fou 97.1 0.00059 1.3E-08 63.8 4.3 101 539-639 1-143 (143)
243 cd08683 C2_C2cd3 C2 domain fou 97.0 0.0017 3.6E-08 60.9 6.7 100 3-104 1-143 (143)
244 PLN02964 phosphatidylserine de 96.9 0.0011 2.5E-08 79.8 5.9 84 3-93 56-141 (644)
245 KOG1327 Copine [Signal transdu 96.9 0.0014 3E-08 75.9 6.3 87 541-629 140-236 (529)
246 KOG2060 Rab3 effector RIM1 and 96.7 0.0013 2.8E-08 72.0 3.8 105 537-643 269-381 (405)
247 KOG1327 Copine [Signal transdu 96.6 0.008 1.7E-07 69.8 9.3 163 571-738 43-220 (529)
248 KOG3837 Uncharacterized conser 96.4 0.0032 7E-08 69.4 4.6 119 3-128 369-505 (523)
249 KOG3837 Uncharacterized conser 96.2 0.0045 9.8E-08 68.3 4.5 124 538-662 368-507 (523)
250 cd08684 C2A_Tac2-N C2 domain f 95.9 0.0065 1.4E-07 52.9 3.1 94 540-638 2-102 (103)
251 PF12416 DUF3668: Cep120 prote 95.9 0.097 2.1E-06 58.7 12.9 121 539-662 2-136 (340)
252 PF15627 CEP76-C2: CEP76 C2 do 95.7 0.084 1.8E-06 52.1 10.4 121 538-659 10-151 (156)
253 PF12416 DUF3668: Cep120 prote 95.6 0.31 6.7E-06 54.8 15.6 122 3-129 2-135 (340)
254 cd08684 C2A_Tac2-N C2 domain f 95.6 0.016 3.4E-07 50.6 4.0 85 4-91 2-94 (103)
255 PF15627 CEP76-C2: CEP76 C2 do 95.5 0.16 3.6E-06 50.1 11.6 125 3-129 11-153 (156)
256 KOG1265 Phospholipase C [Lipid 95.5 0.029 6.3E-07 67.4 7.3 109 2-126 704-823 (1189)
257 cd08398 C2_PI3K_class_I_alpha 95.0 0.17 3.7E-06 50.6 10.1 84 539-627 10-106 (158)
258 cd08693 C2_PI3K_class_I_beta_d 94.9 0.18 3.9E-06 51.4 10.1 85 539-626 10-119 (173)
259 cd08380 C2_PI3K_like C2 domain 94.0 0.34 7.3E-06 48.6 9.7 87 539-627 10-107 (156)
260 PF14470 bPH_3: Bacterial PH d 93.8 0.5 1.1E-05 42.8 9.7 88 698-808 1-90 (96)
261 cd08693 C2_PI3K_class_I_beta_d 93.7 0.29 6.4E-06 49.8 8.7 69 2-72 9-87 (173)
262 cd08398 C2_PI3K_class_I_alpha 93.6 0.86 1.9E-05 45.6 11.7 84 2-89 9-106 (158)
263 KOG1265 Phospholipase C [Lipid 93.2 0.4 8.7E-06 58.1 9.8 111 536-658 702-823 (1189)
264 PF10358 NT-C2: N-terminal C2 93.0 2.7 5.8E-05 41.2 14.3 119 537-662 7-139 (143)
265 cd08397 C2_PI3K_class_III C2 d 92.9 0.93 2E-05 45.5 10.7 71 556-627 28-107 (159)
266 PF10698 DUF2505: Protein of u 92.6 4.9 0.00011 40.4 15.6 147 856-1011 4-157 (159)
267 cd04012 C2A_PI3K_class_II C2 d 92.3 0.6 1.3E-05 47.5 8.6 89 538-627 9-119 (171)
268 PF10358 NT-C2: N-terminal C2 92.3 4.1 8.9E-05 39.9 14.4 118 2-129 8-138 (143)
269 KOG1452 Predicted Rho GTPase-a 91.8 0.38 8.2E-06 51.7 6.5 116 535-658 49-167 (442)
270 cd08380 C2_PI3K_like C2 domain 91.7 0.8 1.7E-05 45.9 8.6 87 2-89 9-107 (156)
271 cd08687 C2_PKN-like C2 domain 89.7 3.6 7.8E-05 36.7 9.5 83 22-125 9-92 (98)
272 cd08687 C2_PKN-like C2 domain 89.4 3.6 7.8E-05 36.7 9.2 83 558-657 9-92 (98)
273 PF14844 PH_BEACH: PH domain a 89.0 0.37 8E-06 44.8 3.3 53 704-756 2-70 (106)
274 cd04012 C2A_PI3K_class_II C2 d 88.9 1.4 3E-05 44.9 7.7 88 2-89 9-119 (171)
275 cd08397 C2_PI3K_class_III C2 d 88.1 1.6 3.4E-05 43.9 7.2 69 20-88 28-106 (159)
276 PF00792 PI3K_C2: Phosphoinosi 87.3 2.4 5.1E-05 41.8 7.9 55 572-627 23-85 (142)
277 cd08399 C2_PI3K_class_I_gamma 86.8 6.4 0.00014 40.2 10.8 69 539-608 12-88 (178)
278 smart00142 PI3K_C2 Phosphoinos 86.1 4.2 9.1E-05 37.4 8.4 71 539-609 13-92 (100)
279 PF10698 DUF2505: Protein of u 84.3 47 0.001 33.2 16.9 145 257-416 4-156 (159)
280 PF11605 Vps36_ESCRT-II: Vacuo 84.2 3.4 7.3E-05 37.1 6.6 41 719-759 37-77 (89)
281 cd08399 C2_PI3K_class_I_gamma 83.6 6.2 0.00014 40.3 9.0 69 2-71 11-88 (178)
282 KOG1452 Predicted Rho GTPase-a 79.9 3.4 7.4E-05 44.7 5.7 112 3-126 53-167 (442)
283 PF00792 PI3K_C2: Phosphoinosi 77.9 9.3 0.0002 37.5 8.0 54 36-89 23-85 (142)
284 smart00142 PI3K_C2 Phosphoinos 76.6 11 0.00024 34.5 7.6 69 3-71 13-91 (100)
285 cd05018 CoxG Carbon monoxide d 73.2 88 0.0019 29.9 14.0 138 856-1013 6-143 (144)
286 PF14429 DOCK-C2: C2 domain in 71.6 16 0.00035 37.6 8.2 55 571-626 61-120 (184)
287 PF15625 CC2D2AN-C2: CC2D2A N- 69.9 60 0.0013 32.9 11.7 79 559-640 38-123 (168)
288 PF15625 CC2D2AN-C2: CC2D2A N- 69.8 84 0.0018 31.8 12.7 69 21-90 36-107 (168)
289 cd08694 C2_Dock-A C2 domains f 68.3 58 0.0013 33.8 11.1 55 571-625 55-114 (196)
290 cd08695 C2_Dock-B C2 domains f 66.1 52 0.0011 34.0 10.2 38 34-71 54-94 (189)
291 cd08694 C2_Dock-A C2 domains f 61.1 77 0.0017 32.9 10.4 38 34-71 54-94 (196)
292 cd08695 C2_Dock-B C2 domains f 59.4 47 0.001 34.3 8.5 54 571-625 55-112 (189)
293 PF14429 DOCK-C2: C2 domain in 59.2 24 0.00053 36.2 6.7 55 34-88 60-120 (184)
294 KOG1329 Phospholipase D1 [Lipi 58.4 9.4 0.0002 47.5 3.8 101 557-659 137-241 (887)
295 PF11696 DUF3292: Protein of u 57.8 34 0.00074 41.5 8.2 97 707-812 520-634 (642)
296 KOG0694 Serine/threonine prote 55.7 3.9 8.4E-05 49.3 0.0 97 557-662 27-125 (694)
297 cd08876 START_1 Uncharacterize 54.3 2.1E+02 0.0045 29.3 12.8 143 856-1012 46-193 (195)
298 cd07823 SRPBCC_5 Ligand-bindin 53.1 2.2E+02 0.0048 27.5 12.5 64 943-1013 79-144 (146)
299 KOG1329 Phospholipase D1 [Lipi 52.9 20 0.00043 44.8 5.3 103 22-128 138-242 (887)
300 cd08904 START_STARD6-like Lipi 51.6 1.6E+02 0.0034 30.9 11.2 75 930-1005 120-199 (204)
301 PF08567 TFIIH_BTF_p62_N: TFII 51.3 53 0.0012 28.8 6.4 38 720-757 14-53 (79)
302 cd07821 PYR_PYL_RCAR_like Pyra 50.6 2.1E+02 0.0046 26.8 11.5 19 856-874 6-24 (140)
303 cd08679 C2_DOCK180_related C2 49.5 35 0.00076 34.9 5.9 54 571-626 55-115 (178)
304 PTZ00447 apical membrane antig 45.6 2.3E+02 0.0049 31.7 11.2 110 3-124 60-171 (508)
305 cd08905 START_STARD1-like Chol 44.7 2.3E+02 0.0049 29.8 11.3 64 931-995 125-192 (209)
306 cd08906 START_STARD3-like Chol 44.4 3.8E+02 0.0083 28.1 12.9 138 855-1003 53-200 (209)
307 cd08868 START_STARD1_3_like Ch 44.2 1.5E+02 0.0032 31.0 9.9 51 933-983 125-180 (208)
308 PF11618 DUF3250: Protein of u 42.3 1.4E+02 0.003 27.9 8.0 95 25-126 2-105 (107)
309 PF11618 DUF3250: Protein of u 40.0 96 0.0021 28.9 6.6 93 561-657 2-104 (107)
310 PTZ00447 apical membrane antig 39.9 1.9E+02 0.0041 32.3 9.6 111 537-656 58-171 (508)
311 PF04707 PRELI: PRELI-like fam 39.3 2.3E+02 0.0049 28.3 9.7 64 940-1003 77-141 (157)
312 cd08679 C2_DOCK180_related C2 37.4 85 0.0018 32.1 6.5 51 37-87 56-114 (178)
313 smart00683 DM16 Repeats in sea 37.1 65 0.0014 26.1 4.3 34 720-754 21-54 (55)
314 cd08696 C2_Dock-C C2 domains f 32.4 1E+02 0.0022 31.6 5.9 39 571-609 56-96 (179)
315 KOG2419 Phosphatidylserine dec 31.6 11 0.00024 44.7 -1.2 57 557-615 304-361 (975)
316 PF06115 DUF956: Domain of unk 31.2 2.9E+02 0.0063 26.1 8.1 41 715-756 20-60 (118)
317 PF00407 Bet_v_1: Pathogenesis 30.9 5E+02 0.011 25.7 10.6 137 857-1014 10-149 (151)
318 KOG0694 Serine/threonine prote 30.8 18 0.00038 44.0 0.2 94 21-126 27-121 (694)
319 cd08696 C2_Dock-C C2 domains f 30.4 1.4E+02 0.0031 30.6 6.7 38 34-71 55-95 (179)
320 cd08697 C2_Dock-D C2 domains f 29.2 1.7E+02 0.0037 30.2 7.0 38 34-71 57-97 (185)
321 PF01060 DUF290: Transthyretin 28.6 1.8E+02 0.0039 25.3 6.2 40 593-642 7-46 (80)
322 PF07289 DUF1448: Protein of u 28.4 2.9E+02 0.0063 31.2 9.0 84 719-816 42-128 (339)
323 cd00177 START Lipid-binding ST 28.3 5.2E+02 0.011 25.8 10.8 50 932-983 114-167 (193)
324 PF10409 PTEN_C2: C2 domain of 26.6 5.7E+02 0.012 24.4 10.2 89 2-90 5-98 (134)
325 PF06219 DUF1005: Protein of u 26.6 4.4E+02 0.0096 30.5 10.0 106 22-128 36-169 (460)
326 cd01201 Neurobeachin Neurobeac 26.5 70 0.0015 29.7 3.3 54 703-756 2-70 (108)
327 cd08870 START_STARD2_7-like Li 26.4 7.5E+02 0.016 25.7 12.8 143 857-1010 56-207 (209)
328 PF07162 B9-C2: Ciliary basal 26.4 6.4E+02 0.014 25.4 10.7 78 3-86 4-101 (168)
329 cd08697 C2_Dock-D C2 domains f 26.1 1.9E+02 0.0042 29.8 6.7 38 571-608 58-97 (185)
330 KOG0904 Phosphatidylinositol 3 26.0 1.1E+02 0.0023 38.5 5.5 66 539-607 345-421 (1076)
331 cd08877 START_2 Uncharacterize 23.6 8.5E+02 0.019 25.4 12.3 128 855-992 50-198 (215)
332 PF12068 DUF3548: Domain of un 20.2 1.2E+02 0.0025 32.1 3.9 36 739-777 111-146 (213)
333 cd05137 RasGAP_CLA2_BUD2 CLA2/ 20.1 1.3E+02 0.0027 35.1 4.5 42 616-658 1-44 (395)
No 1
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=99.96 E-value=1e-29 Score=298.25 Aligned_cols=288 Identities=22% Similarity=0.310 Sum_probs=212.7
Q ss_pred CCcccccccceeceeeeeccccceeeeeccEEEEeeccCCceEEEEEecccceEEEEcCCcccCCCCCeEEEEEeecCCC
Q 001764 698 LPPEEFLINDFTCHLKRKMLLQGRLFLSARIIGFHANLFGHKTNFFFLWEDIEDIQVLPPSLSSMGSPVIVMTLRQGRGM 777 (1016)
Q Consensus 698 l~~~E~l~~~~~c~~~~~~~~~Grlyis~~~~cF~s~~~g~~t~~~i~~~dI~~i~k~~~~~~~~~~~~~~i~l~~~~~~ 777 (1016)
+|+++.|+.+|+|+++|.|.+|||||++..||||||++|||.|+.+||+++|.-|+|+.++.
T Consensus 117 ~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf~eI~~ikk~~tag------------------ 178 (590)
T KOG1032|consen 117 VPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIPFDEITLIKKTKTAG------------------ 178 (590)
T ss_pred CCCcceeeeecchhhccccccccccccccceeeecccccCccceeEEeeeeeeeeehhhhcc------------------
Confidence 88999999999999999999999999999999999999999999999999999999999543
Q ss_pred CCCCCceeeccCCceEEEeccCcCHHHHHHHHHHHHHhc---CCCchhhccccc--cccc-cc------cCCCC--CCCC
Q 001764 778 DARHGAKTQDEEGRLKFHFHSFVSYNVAHRTIMALWKAR---SLSPEQKVQIVE--ESEA-KS------LQSEE--GGTF 843 (1016)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~f~sf~~rd~~~~~i~~~w~~~---~~~~~~~~~~~~--~~~~-~~------~~~e~--~~~~ 843 (1016)
.+++++.++ .+..+|+|+||.+||.+|++|..+-+.- .-++..-..... +.+. ++ ...++ ....
T Consensus 179 -~fpn~i~i~-t~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~s 256 (590)
T KOG1032|consen 179 -IFPNAIEIT-TGTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPRADSDYLSSVEPEVNDDQQGNVDNSQSPSALQNS 256 (590)
T ss_pred -CCCcceEEe-cCCCcceeeecccCccHHHHHHHhhhhcccccCCccccchhcccCCCCcCcccccccccCCCccccccc
Confidence 457778887 3667999999999999999886654421 111110000000 0000 00 00000 0000
Q ss_pred CCCC-------------CcccceeecccccCChhheee-ecCCChhHHHHHHHcCcceeeecccccCCCCceEEEEEEEE
Q 001764 844 LGLE-------------DVTMSEVYSSVLPVPMSFFME-LFGGGELERAVMEKAGCVSYSCSSWESEKLDVYERQIYYRF 909 (1016)
Q Consensus 844 ~~~~-------------~~~~~~v~~~~~p~~~~~~f~-lF~~~~~~~~~~~~~g~~~~~~~~W~~~~~~~~~R~~sy~~ 909 (1016)
.+.+ ......+....|.+++..+|+ ||++..|...+.+.++..+++..+|.....+...|.++|+.
T Consensus 257 ~~~~~~e~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~lf~d~~~~~~~l~~~~~~~vs~~~~~~~~~~~~~r~~~y~~ 336 (590)
T KOG1032|consen 257 FDSPKEEELEHDFSCSLSRLFGVLGRLPFSAPIGAFFSLLFGDNTFFFFFLEDQDEIQVSPIPWKGPRSGILLRTLSYTK 336 (590)
T ss_pred cCCCccccccccccccccccccccccccccccccccceeeccCcceeeeccccccccccccccccCCCccceeEeccCCc
Confidence 0100 111223344567799999997 59988899999999999999999998776788999999996
Q ss_pred eeccCCCccccC--ce-EEEEeccCCCcEEEEEEEEeCCCCCCCceEEEEEEEEEeCCCCCCccEEEEEEEEEEeeccch
Q 001764 910 DKCISRYRGEVT--ST-QQKSPLPNGNGWLVEEVMTLHGVPLGDYFNLHLRYQVEDSPSRPKGCLAQVYLGVAWLKSTRH 986 (1016)
Q Consensus 910 ~~~~~~~~~~v~--~~-q~~~~~~~~~~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~~~c~l~V~~~V~w~Kst~~ 986 (1016)
..+. +.|+..| .. |...+..-..++.|...+.|++||||++|.|++||+|+|... +.|+|+|+++|+|.|++|.
T Consensus 337 ~l~~-~~gPk~t~~~~~~~l~~~~~~~~~~vls~t~~~~vps~~~f~v~~~y~i~~~~~--~~~~l~v~~~V~~~~~sw~ 413 (590)
T KOG1032|consen 337 GLPA-KSGPKSTDCEGTQTLHHQDLEKYFRVLSETLTPDVPSGDSFYVKTRYLISRAGS--NSCKLKVSTSVEWTKSSWD 413 (590)
T ss_pred cCCC-cCCCccccccceeeEEeccchhhhhhhheeccCCccccceeeeeEEEEEEecCC--cceeecceeEEEeccCchh
Confidence 5443 4444433 22 333333334458899999999999999999999999999876 9999999999999999999
Q ss_pred hhhhhhhhHHhHHHHHHHHHHHHHhhh
Q 001764 987 QKRITKNIVSNLEDRLRVKLSVIEKEF 1013 (1016)
Q Consensus 987 K~~Ie~~~~~~~~~~~~~~~~~~~~ev 1013 (1016)
+.+++.++. ..+.+++.+++.+
T Consensus 414 ~~~~~~~~~-----~~k~lv~~~~~~~ 435 (590)
T KOG1032|consen 414 VPVSEIGSN-----TLKDLVEILEKLL 435 (590)
T ss_pred hcccccccc-----chhhHHHHHHHHH
Confidence 999988875 4455555555544
No 2
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=99.93 E-value=4e-27 Score=276.56 Aligned_cols=570 Identities=29% Similarity=0.354 Sum_probs=448.2
Q ss_pred CchhhhhccccceeEEeehhhHhhheeeeeeccCccccCCCccCCCCCccchheeeehhhhhcCceehhhHHHHHHhhhh
Q 001764 444 SDWKLAVHYFANFTVVSSFFMGIYVLIHIWLATSTTIQGLEFVGLDLPDSIGEFIVCGVLVLQGERFLQLISRFMQARKQ 523 (1016)
Q Consensus 444 ~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~~~ 523 (1016)
..|+....++....+.......+++-++...+.+...++..+.++++++..+...-+...+....+..-...++..+...
T Consensus 4 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~~~~~~~n~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~k~~ 83 (590)
T KOG1032|consen 4 MQQKSESPKFAKVSVLLSSPLGISVDVAMNVEESAKIQGFPFLGLNLPDVSGSLFSSKVISSDLERSSDRVDSFASAKLH 83 (590)
T ss_pred ccccccccchhhhhcccccccccccceeccccccccccCcccccCCchhhcccccCCccccccccccccccccccccccC
Confidence 44555666777777777777778888999999999999999999999998888887777777666666666666676666
Q ss_pred cCCCCCcccCCCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEE
Q 001764 524 KGSDHGVKAQGDGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVE 603 (1016)
Q Consensus 524 ~~~d~~~~~~~~~~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~ 603 (1016)
.+...+.+...+++......+.+.++..-..++.++||..+.+.+..+...+...+.+|.|++.+.|.....+-....+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vI 163 (590)
T KOG1032|consen 84 KGGLKGSPKTEKGYIGSSALLAGVNLASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVI 163 (590)
T ss_pred CCCCCcccccCccccchhhhhcchhhhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCccceeEE
Confidence 77778888888888888888888899888888899999999999999999999999999999999997655555678888
Q ss_pred EEEccCCCCCCceeeEEEEEceecCCCCceeEEEECCcCCcCcccceEEEEEEEeecCCCccchhhhhhcccccCce--e
Q 001764 604 VYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQACQSKLHLRIFLNNTKGSNVVKEYLTKMEKEVGKK--I 681 (1016)
Q Consensus 604 V~D~d~~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~~~~~~~~~g~l~l~~~~~~~~~~~~~~~~l~k~e~~~~~~--~ 681 (1016)
.++++..+.+..-.|.+...+.-- .......|..|.++.+..+.-+++++..+..++.+.....++..++++.+.+ -
T Consensus 164 pf~eI~~ikk~~tag~fpn~i~i~-t~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~~~~~~l~~~~~~~~~~~~~ 242 (590)
T KOG1032|consen 164 PFDEITLIKKTKTAGIFPNAIEIT-TGTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPRADSDYLSSVEPEVNDDQQG 242 (590)
T ss_pred eeeeeeeeehhhhccCCCcceEEe-cCCCcceeeecccCccHHHHHHHhhhhcccccCCccccchhcccCCCCcCccccc
Confidence 888887556666677666555544 5667799999999888777778999999999999988999999998887776 3
Q ss_pred EeecCCccccceeccCCCcccccccceeceeeeeccccceeeeeccEEEEeeccCCceEEEEEecccceEEEEcCCcccC
Q 001764 682 NLRSPQTNSAFQKLFGLPPEEFLINDFTCHLKRKMLLQGRLFLSARIIGFHANLFGHKTNFFFLWEDIEDIQVLPPSLSS 761 (1016)
Q Consensus 682 ~~~s~~~~~~f~~~F~l~~~E~l~~~~~c~~~~~~~~~Grlyis~~~~cF~s~~~g~~t~~~i~~~dI~~i~k~~~~~~~ 761 (1016)
.....+.++.++..|++|.+|.+..+++|.+.+.++++|+++++-...||++.+||..+.+...|++++.++..+.....
T Consensus 243 ~~~~~~~~s~~~~s~~~~~~e~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~lf~d~~~~~~~l~~~~~~~vs~~~~~~ 322 (590)
T KOG1032|consen 243 NVDNSQSPSALQNSFDSPKEEELEHDFSCSLSRLFGVLGRLPFSAPIGAFFSLLFGDNTFFFFFLEDQDEIQVSPIPWKG 322 (590)
T ss_pred ccccCCCccccccccCCCccccccccccccccccccccccccccccccccceeeccCcceeeeccccccccccccccccC
Confidence 45667778889999999999999999999999999999999999999999999999999999999999999998877765
Q ss_pred CCCCeEEEEEeecCCCCCCCCceeeccCCceEEEeccCcCH-HHHHHHHHHHHHhcCCCchhhcccccccc---ccccCC
Q 001764 762 MGSPVIVMTLRQGRGMDARHGAKTQDEEGRLKFHFHSFVSY-NVAHRTIMALWKARSLSPEQKVQIVEESE---AKSLQS 837 (1016)
Q Consensus 762 ~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~f~sf~~r-d~~~~~i~~~w~~~~~~~~~~~~~~~~~~---~~~~~~ 837 (1016)
.+.+....++..+.++.+.++.+.....+.+.++|.++... ...-.+++..|............+..... ..-...
T Consensus 323 ~~~~~~~r~~~y~~~l~~~~gPk~t~~~~~~~l~~~~~~~~~~vls~t~~~~vps~~~f~v~~~y~i~~~~~~~~~l~v~ 402 (590)
T KOG1032|consen 323 PRSGILLRTLSYTKGLPAKSGPKSTDCEGTQTLHHQDLEKYFRVLSETLTPDVPSGDSFYVKTRYLISRAGSNSCKLKVS 402 (590)
T ss_pred CCccceeEeccCCccCCCcCCCccccccceeeEEeccchhhhhhhheeccCCccccceeeeeEEEEEEecCCcceeecce
Confidence 55566888888888999999999998888888999887663 22222333233211111111111111100 000000
Q ss_pred CCCCCCCCCCCcccceeecccccCChhheeeecCCChhHHHHHHHcCcceeeecccccCCCCceEEEEEEEE--eeccCC
Q 001764 838 EEGGTFLGLEDVTMSEVYSSVLPVPMSFFMELFGGGELERAVMEKAGCVSYSCSSWESEKLDVYERQIYYRF--DKCISR 915 (1016)
Q Consensus 838 e~~~~~~~~~~~~~~~v~~~~~p~~~~~~f~lF~~~~~~~~~~~~~g~~~~~~~~W~~~~~~~~~R~~sy~~--~~~~~~ 915 (1016)
.+..-....-+..+.++.....++.++.+..+|.+..-.+.-+++.++..+.-++|+...+++.+|+.+|+- ...+++
T Consensus 403 ~~V~~~~~sw~~~~~~~~~~~~k~lv~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~~~~~~i~~ 482 (590)
T KOG1032|consen 403 TSVEWTKSSWDVPVSEIGSNTLKDLVEILEKLLENGEELAKNQEKEDELTYEGSPWEVEKPGGTVRQLSYKEVWNKPISP 482 (590)
T ss_pred eEEEeccCchhhccccccccchhhHHHHHHHHHhccHHHHHhhcccccccccCCCccccCCCceeeeecccccccccccc
Confidence 100000112234456666656677777777888877766777888888888888999888899999999995 566788
Q ss_pred CccccCceEEEEeccCCCcEEEEEEEEeCCCCCCCceEEEEEEE-EEeCCCCCCccEEEEEEEEEEeeccchhhhhhhhh
Q 001764 916 YRGEVTSTQQKSPLPNGNGWLVEEVMTLHGVPLGDYFNLHLRYQ-VEDSPSRPKGCLAQVYLGVAWLKSTRHQKRITKNI 994 (1016)
Q Consensus 916 ~~~~v~~~q~~~~~~~~~~~vv~~~~~~~dVPygd~F~v~~r~~-i~~~~~~~~~c~l~V~~~V~w~Kst~~K~~Ie~~~ 994 (1016)
....++..|++........|++++++.+|+||||++|.|+.||. ..........+.+.++..|.|++..+++-...+.+
T Consensus 483 ~~~~~~~~~i~~l~~~~~~~l~~~i~~l~~~~~g~~~~~h~r~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~~~~k~~ 562 (590)
T KOG1032|consen 483 DKREVTLLQVVVLVPLKILWLLNTILFLHDVPFGSYFEVHERYREALDETSKVKTTLVWVSFRIEWLKDIKMEARKIKQI 562 (590)
T ss_pred ccccceeEEEEEEehhhhhHHHHHHhhccCCCCccceeeehhhhhhhcccchhhhhhHHHHHHHHHHHHHHHHHhhhHHH
Confidence 88999999999888887899999999999999999999999994 33333344677888888999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHhhhc
Q 001764 995 VSNLEDRLRVKLSVIEKEFA 1014 (1016)
Q Consensus 995 ~~~~~~~~~~~~~~~~~ev~ 1014 (1016)
+-+.++.++.++.+++++-.
T Consensus 563 ~r~~~~~l~~~~~~l~~~~~ 582 (590)
T KOG1032|consen 563 LRNDQDLLEVLFSLLEKLSQ 582 (590)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988643
No 3
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.4e-21 Score=224.43 Aligned_cols=104 Identities=40% Similarity=0.653 Sum_probs=89.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEEEeeeccCCCCCeeccEEEEEEe---CCCCEEEEEEEecCCCCC
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR---QRFKTKVVRKSLSPSWEEEFSFKVE---DLKDELVISVLDEDKYFN 75 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~---~k~kTkvi~~t~nP~WnE~f~f~v~---~~~~~L~v~V~D~d~~~~ 75 (1016)
.|.|+|++|++|+.++..|.+||||++++.. .+.+|++.++++||+|||+|.|.+. -....|.+.|||.|+|++
T Consensus 168 ~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drfsr 247 (421)
T KOG1028|consen 168 LLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRFSR 247 (421)
T ss_pred EEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCCccc
Confidence 5899999999999999778899999999963 5699999999999999999999983 346899999999999999
Q ss_pred CceeEEEEeecccccccCCCCCccEEEEccCCC
Q 001764 76 DDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (1016)
Q Consensus 76 d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~ 108 (1016)
+++||++.++|..+.... ....|..|....
T Consensus 248 ~~~iGev~~~l~~~~~~~---~~~~w~~l~~~~ 277 (421)
T KOG1028|consen 248 HDFIGEVILPLGEVDLLS---TTLFWKDLQPSS 277 (421)
T ss_pred ccEEEEEEecCccccccc---cceeeecccccc
Confidence 999999999988875322 145688887653
No 4
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.86 E-value=5.2e-21 Score=181.82 Aligned_cols=118 Identities=14% Similarity=0.271 Sum_probs=105.0
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeecCCC-CCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCCCCc
Q 001764 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQ-QCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEAT 615 (1016)
Q Consensus 537 ~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~-t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~~dd 615 (1016)
|+|.|+|++|++|+..+ .|++||||+|.+++++.+|+++.+ +.||+|||+|.|.+... ...|.|+|||+|. +++|+
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~-~~~dd 78 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERA-FTMDE 78 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCC-CcCCc
Confidence 47999999999998887 899999999999999999999865 89999999999987543 5689999999999 99999
Q ss_pred eeeEEEEEce-ecCCCCceeEEEECCcCCcCcccceEEEEEEE
Q 001764 616 SLGHAEINFV-KSDISDLADVWIPLQGKLAQACQSKLHLRIFL 657 (1016)
Q Consensus 616 ~lG~~~i~l~-~~~~~~~~~~w~~L~~~~~~~~~g~l~l~~~~ 657 (1016)
+||.+.+++. .+..+...+.|++|.++.+....|.|||.+.|
T Consensus 79 ~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 79 RIAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred eEEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence 9999999996 46667778999999987776788999999875
No 5
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.84 E-value=5.6e-19 Score=211.04 Aligned_cols=123 Identities=29% Similarity=0.489 Sum_probs=108.8
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee-eeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCCC
Q 001764 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNE 613 (1016)
Q Consensus 535 ~~~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~~-~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~~ 613 (1016)
+.|-|+|.+..|.||+..|.+|.+||||++.+++++ ++|+++++|+||.|||+|..++.......+.+.|+|||. -.+
T Consensus 1038 nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~-~~k 1116 (1227)
T COG5038 1038 NSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDS-GEK 1116 (1227)
T ss_pred ccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeeccc-CCC
Confidence 457799999999999999999999999999999996 999999999999999999999877778899999999999 789
Q ss_pred CceeeEEEEEceecCCCCceeEEEECCcCCcCcccceEEEEEEEe
Q 001764 614 ATSLGHAEINFVKSDISDLADVWIPLQGKLAQACQSKLHLRIFLN 658 (1016)
Q Consensus 614 dd~lG~~~i~l~~~~~~~~~~~w~~L~~~~~~~~~g~l~l~~~~~ 658 (1016)
+|.||.+.++|..+..+.....-.+|.++......|.+|+.+.+.
T Consensus 1117 nd~lg~~~idL~~l~~~~~~n~~i~ldgk~~~~~~g~~~~~~~~r 1161 (1227)
T COG5038 1117 NDLLGTAEIDLSKLEPGGTTNSNIPLDGKTFIVLDGTLHPGFNFR 1161 (1227)
T ss_pred ccccccccccHhhcCcCCccceeeeccCcceEecccEeecceecc
Confidence 999999999999999888778889998875344566666666553
No 6
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.83 E-value=6.7e-20 Score=174.21 Aligned_cols=117 Identities=23% Similarity=0.479 Sum_probs=102.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccC-CCCCeeccEEEEEEeCCCCEEEEEEEecCCCCCCceeE
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRK-SLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVG 80 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~~k~kTkvi~~-t~nP~WnE~f~f~v~~~~~~L~v~V~D~d~~~~d~~lG 80 (1016)
+|+|+|++|++|+..+ .|++||||++.+++++++|+++.+ +.||+|||+|.|.+.+....|.|+|||+|.+++|++||
T Consensus 3 ~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~iG 81 (121)
T cd04016 3 RLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERIA 81 (121)
T ss_pred EEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceEE
Confidence 5899999999988777 799999999999999999999976 79999999999999766678999999999999999999
Q ss_pred EEEeeccc-ccccCCCCCccEEEEccCCCCCCCCCcceEEEEEEEE
Q 001764 81 FLKIPVSR-VFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (1016)
Q Consensus 81 ~~~v~l~~-l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~ 125 (1016)
++.+++.. +..+ .....||+|.++.++ ...|+|+|+++|
T Consensus 82 ~~~i~l~~~~~~g---~~~~~W~~L~~~~~~---~~~g~i~l~l~y 121 (121)
T cd04016 82 WTHITIPESVFNG---ETLDDWYSLSGKQGE---DKEGMINLVFSY 121 (121)
T ss_pred EEEEECchhccCC---CCccccEeCcCccCC---CCceEEEEEEeC
Confidence 99999964 5432 336889999876543 467999999987
No 7
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.82 E-value=1.1e-19 Score=175.82 Aligned_cols=117 Identities=19% Similarity=0.326 Sum_probs=102.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeecCCCCCCCeeeEEEEEEeeC-----CCCCeEEEEEEEccCCCCC
Q 001764 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMD-----EPPSMLDVEVYDFDGPFNE 613 (1016)
Q Consensus 539 L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~~~~-----~~~~~L~i~V~D~d~~~~~ 613 (1016)
++|+|++|+||+.++..|.+||||+|.+++.+++|+++++++||+|||.|.|.+.. .....|.|.|||+|. +++
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~-~~~ 79 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL-LGL 79 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc-cCC
Confidence 57999999999999999999999999999999999999999999999999998855 246789999999998 888
Q ss_pred CceeeEEEEEceecC--CCCceeEEEECCcCCc--CcccceEEEEEE
Q 001764 614 ATSLGHAEINFVKSD--ISDLADVWIPLQGKLA--QACQSKLHLRIF 656 (1016)
Q Consensus 614 dd~lG~~~i~l~~~~--~~~~~~~w~~L~~~~~--~~~~g~l~l~~~ 656 (1016)
|++||++.|++.++. .+...+.||+|.++.+ ....|+|+|+++
T Consensus 80 d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 80 DKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred CceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 999999999999976 5566789999986433 235799998873
No 8
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.81 E-value=1.9e-19 Score=174.16 Aligned_cols=119 Identities=32% Similarity=0.573 Sum_probs=103.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeC------CCCEEEEEEEecCCCCCC
Q 001764 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVED------LKDELVISVLDEDKYFND 76 (1016)
Q Consensus 3 L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~~k~kTkvi~~t~nP~WnE~f~f~v~~------~~~~L~v~V~D~d~~~~d 76 (1016)
|+|+|++|+||+.++..|.+||||++.+++++++|+++++++||+|||+|.|.+.. ....|.+.|||++.+++|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 58999999999999999999999999999999999999999999999999999965 467899999999998899
Q ss_pred ceeEEEEeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEE
Q 001764 77 DFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTI 123 (1016)
Q Consensus 77 ~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l 123 (1016)
++||++.|+|.++.... +.....||+|.++.++ ..+.+|+|+|++
T Consensus 81 ~~iG~~~i~l~~l~~~~-~~~~~~W~~L~~~~~~-~~~~~Gei~l~~ 125 (126)
T cd08682 81 KFLGQVSIPLNDLDEDK-GRRRTRWFKLESKPGK-DDKERGEIEVDI 125 (126)
T ss_pred ceeEEEEEEHHHhhccC-CCcccEEEECcCCCCC-CccccceEEEEe
Confidence 99999999999986322 3346789999875542 235789999987
No 9
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.80 E-value=4.2e-19 Score=176.03 Aligned_cols=123 Identities=22% Similarity=0.312 Sum_probs=106.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeecCCC-CCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCCCCcee
Q 001764 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQ-QCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSL 617 (1016)
Q Consensus 539 L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~-t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~~dd~l 617 (1016)
|+|+|++|+||+++|..|.+||||++.++++..+|+++.+ ++||+|||.|+|.+.....+.|.|+|||++. .++|++|
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~-~~~dd~l 80 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVG-PNKDEPL 80 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecC-CCCCCeE
Confidence 8999999999999999999999999999999999998876 6999999999998765556789999999998 7889999
Q ss_pred eEEEEEceecCCC----CceeEEEECCcCCc-------CcccceEEEEEEEeecCC
Q 001764 618 GHAEINFVKSDIS----DLADVWIPLQGKLA-------QACQSKLHLRIFLNNTKG 662 (1016)
Q Consensus 618 G~~~i~l~~~~~~----~~~~~w~~L~~~~~-------~~~~g~l~l~~~~~~~~~ 662 (1016)
|++.++|.++..+ ...+.||+|.+..+ ...+|+|||++.+....+
T Consensus 81 G~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~ 136 (150)
T cd04019 81 GRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYH 136 (150)
T ss_pred EEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcce
Confidence 9999999997643 34589999986543 345899999999985443
No 10
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.80 E-value=8.6e-19 Score=167.08 Aligned_cols=115 Identities=26% Similarity=0.493 Sum_probs=105.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCCCCcee
Q 001764 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSL 617 (1016)
Q Consensus 538 ~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~~dd~l 617 (1016)
+|+|+|++|+||+.++..|.+||||++.++++.++|+++++++||.|||+|.|.+.......|.|+|||+|. +++|++|
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~-~~~~~~i 79 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDT-GKKDEFI 79 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCC-CCCCCeE
Confidence 389999999999999999999999999999999999999999999999999998866557899999999998 8899999
Q ss_pred eEEEEEceecCCCCceeEEEECCcCCcCcccceEEEEEEEe
Q 001764 618 GHAEINFVKSDISDLADVWIPLQGKLAQACQSKLHLRIFLN 658 (1016)
Q Consensus 618 G~~~i~l~~~~~~~~~~~w~~L~~~~~~~~~g~l~l~~~~~ 658 (1016)
|++.+++.++..+...+.|++|.+. .|+|++++.+.
T Consensus 80 G~~~~~l~~l~~~~~~~~w~~L~~~-----~G~~~~~~~~~ 115 (116)
T cd08376 80 GRCEIDLSALPREQTHSLELELEDG-----EGSLLLLLTLT 115 (116)
T ss_pred EEEEEeHHHCCCCCceEEEEEccCC-----CcEEEEEEEec
Confidence 9999999999888889999999753 48899998764
No 11
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.80 E-value=9.1e-19 Score=168.20 Aligned_cols=118 Identities=27% Similarity=0.443 Sum_probs=106.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCCCCcee
Q 001764 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGK-SRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSL 617 (1016)
Q Consensus 539 L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~-~~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~~dd~l 617 (1016)
|+|+|++|+||+.+|..|.+||||++.++++ .++|+++.+++||.|||.|.|.+.. ..+.|.|+|||+|. +++|++|
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~-~~~~l~~~v~D~d~-~~~~~~i 79 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIED-VTQPLYIKVFDYDR-GLTDDFM 79 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecC-CCCeEEEEEEeCCC-CCCCcce
Confidence 8999999999999999999999999999884 5899999999999999999998743 46789999999999 8899999
Q ss_pred eEEEEEceecCCCCceeEEEECCcCCcCcccceEEEEEEEe
Q 001764 618 GHAEINFVKSDISDLADVWIPLQGKLAQACQSKLHLRIFLN 658 (1016)
Q Consensus 618 G~~~i~l~~~~~~~~~~~w~~L~~~~~~~~~g~l~l~~~~~ 658 (1016)
|++.+++.++..+...+.|++|.++.+....|.|+|++.+.
T Consensus 80 G~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~ 120 (121)
T cd04042 80 GSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLT 120 (121)
T ss_pred EEEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEEC
Confidence 99999999999888899999998765555789999999874
No 12
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.79 E-value=1.3e-18 Score=166.52 Aligned_cols=113 Identities=22% Similarity=0.307 Sum_probs=99.5
Q ss_pred EEEEEEEeec---CCCCCCCCCCCcEEEEEECCeeeeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCC---
Q 001764 539 LTVALIKGDN---LAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFN--- 612 (1016)
Q Consensus 539 L~V~v~~A~~---L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~--- 612 (1016)
|+|+|++|+| |+++|..|.+||||+|++++++.+|+++++++||+|||+|.|.+.. ....|.|+|||+|. ++
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~-~~~~l~v~V~d~d~-~~~~~ 79 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYD-PCTVLTVGVFDNSQ-SHWKE 79 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecC-CCCEEEEEEEECCC-ccccc
Confidence 8999999999 8999999999999999999999999999999999999999998754 35689999999987 63
Q ss_pred ---CCceeeEEEEEceecCCCCceeEEEECCcCC--cCcccceEEE
Q 001764 613 ---EATSLGHAEINFVKSDISDLADVWIPLQGKL--AQACQSKLHL 653 (1016)
Q Consensus 613 ---~dd~lG~~~i~l~~~~~~~~~~~w~~L~~~~--~~~~~g~l~l 653 (1016)
+|++||++.+++..+..+...+.||+|.... +....|+|++
T Consensus 80 ~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 80 AVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred cCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 8999999999999998888889999998532 3335677764
No 13
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.78 E-value=1.7e-18 Score=167.82 Aligned_cols=121 Identities=26% Similarity=0.410 Sum_probs=105.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCC----CCEEEEEEEecCCCC-CC
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDL----KDELVISVLDEDKYF-ND 76 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~~k~kTkvi~~t~nP~WnE~f~f~v~~~----~~~L~v~V~D~d~~~-~d 76 (1016)
+|.|+|++|++|++.+..|.+||||++.+++++++|+++++++||+|||.|.|.+... ...|.|+|||++.++ ++
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 5899999999999999889999999999999999999999999999999999999543 368999999999886 89
Q ss_pred ceeEEEEeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEEEEE
Q 001764 77 DFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (1016)
Q Consensus 77 ~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~ 126 (1016)
+|||++.+++.++.. .+.....||+|..++.. ...+|+|+|++.+.
T Consensus 81 ~~lG~v~i~l~~l~~--~~~~~~~w~~L~~~~~~--~~~~G~l~l~~~~~ 126 (127)
T cd04022 81 SFLGRVRISGTSFVP--PSEAVVQRYPLEKRGLF--SRVRGEIGLKVYIT 126 (127)
T ss_pred CeeeEEEEcHHHcCC--CCCccceEeEeeeCCCC--CCccEEEEEEEEEc
Confidence 999999999999873 23346799999865432 35789999999874
No 14
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.78 E-value=8.6e-19 Score=167.63 Aligned_cols=117 Identities=22% Similarity=0.376 Sum_probs=102.7
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeecCC-CCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCCCCc
Q 001764 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKF-QQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEAT 615 (1016)
Q Consensus 537 ~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~-~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~~dd 615 (1016)
|.|+|+|++|+||+..+..|.+||||++.+++..++|+++. +++||.|||.|.|.+..+..+.|.|+|||++. .+ |+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~-~~-~~ 78 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDK-RK-PD 78 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCC-CC-Cc
Confidence 46999999999999999999999999999999888898875 57999999999998876667889999999998 65 89
Q ss_pred eeeEEEEEceecCCCCceeEEEECCcCCcCcccceEEEEEEE
Q 001764 616 SLGHAEINFVKSDISDLADVWIPLQGKLAQACQSKLHLRIFL 657 (1016)
Q Consensus 616 ~lG~~~i~l~~~~~~~~~~~w~~L~~~~~~~~~g~l~l~~~~ 657 (1016)
+||++.+++.++..+...+.|++|..+. ...|+|+|++.|
T Consensus 79 ~iG~~~~~l~~~~~~~~~~~w~~L~~~~--~~~G~i~l~l~f 118 (118)
T cd08681 79 LIGDTEVDLSPALKEGEFDDWYELTLKG--RYAGEVYLELTF 118 (118)
T ss_pred ceEEEEEecHHHhhcCCCCCcEEeccCC--cEeeEEEEEEEC
Confidence 9999999999987666679999998643 367899998864
No 15
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.78 E-value=3.6e-18 Score=169.35 Aligned_cols=126 Identities=30% Similarity=0.484 Sum_probs=108.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccC-CCCCeeccEEEEEEeCC-CCEEEEEEEecCCCCCCceeE
Q 001764 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRK-SLSPSWEEEFSFKVEDL-KDELVISVLDEDKYFNDDFVG 80 (1016)
Q Consensus 3 L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~~k~kTkvi~~-t~nP~WnE~f~f~v~~~-~~~L~v~V~D~d~~~~d~~lG 80 (1016)
|+|+|++|++|++++.+|.+||||++.+++++.+|+++.+ ++||+|||.|.|.+.+. ...|.|.|||++.++++++||
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG 81 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLG 81 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEE
Confidence 8999999999999999999999999999999999999977 69999999999999543 468999999999888899999
Q ss_pred EEEeecccccccC-CCCCccEEEEccCCCC----CCCCCcceEEEEEEEEEec
Q 001764 81 FLKIPVSRVFDAD-NKSLPTAWHSLQPKNK----KSKNKDCGEILLTISFSHN 128 (1016)
Q Consensus 81 ~~~v~l~~l~~~~-~~~~~~~w~~L~~~~~----~~~~~~~G~I~l~l~~~~~ 128 (1016)
++.++|.++.... .+....+||+|.+..+ ++..+.+|+|+|.++|.+.
T Consensus 82 ~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~ 134 (150)
T cd04019 82 RAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGG 134 (150)
T ss_pred EEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCc
Confidence 9999999986432 2344689999997653 1234678999999999754
No 16
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.78 E-value=1.6e-18 Score=167.97 Aligned_cols=119 Identities=21% Similarity=0.379 Sum_probs=103.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeecCCCCCCCeeeEEEEEEeeCC---CCCeEEEEEEEccCCCC-CC
Q 001764 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDE---PPSMLDVEVYDFDGPFN-EA 614 (1016)
Q Consensus 539 L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~~~~~---~~~~L~i~V~D~d~~~~-~d 614 (1016)
|+|+|++|+||++.+..|.+||||++.+++++++|++++++.||.|||.|.|.+... ....|.|+|||++. +. ++
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~-~~~~d 80 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR-SGRRR 80 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC-CcCCC
Confidence 899999999999999999999999999999999999999999999999999987532 23579999999998 66 89
Q ss_pred ceeeEEEEEceecC-CCCceeEEEECCcCC-cCcccceEEEEEEEe
Q 001764 615 TSLGHAEINFVKSD-ISDLADVWIPLQGKL-AQACQSKLHLRIFLN 658 (1016)
Q Consensus 615 d~lG~~~i~l~~~~-~~~~~~~w~~L~~~~-~~~~~g~l~l~~~~~ 658 (1016)
++||++.+++.++. .+.....||+|..++ ....+|+|+|++.++
T Consensus 81 ~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 81 SFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 99999999999987 456679999998653 223589999998875
No 17
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.78 E-value=3.7e-18 Score=163.99 Aligned_cols=120 Identities=33% Similarity=0.573 Sum_probs=106.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCCCCCceeE
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-QRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVG 80 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~-~k~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~v~V~D~d~~~~d~~lG 80 (1016)
+|+|+|++|++|+..+.+|.+||||++.+++ ..++|+++.+++||+|||+|.|.+......|.|+|||++.++++++||
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG 80 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMG 80 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceE
Confidence 6899999999999999999999999999987 578999999999999999999999776789999999999998999999
Q ss_pred EEEeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEEEEEe
Q 001764 81 FLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSH 127 (1016)
Q Consensus 81 ~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~ 127 (1016)
++.+++.++... .....|++|.++++ .+..|+|+|.++|.|
T Consensus 81 ~~~~~l~~l~~~---~~~~~~~~L~~~~~---~~~~G~l~l~~~~~~ 121 (121)
T cd04042 81 SAFVDLSTLELN---KPTEVKLKLEDPNS---DEDLGYISLVVTLTP 121 (121)
T ss_pred EEEEEHHHcCCC---CCeEEEEECCCCCC---ccCceEEEEEEEECC
Confidence 999999998643 23578999986653 256899999999853
No 18
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.78 E-value=2.3e-18 Score=164.84 Aligned_cols=114 Identities=22% Similarity=0.343 Sum_probs=102.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCCCCc
Q 001764 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNG---KSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEAT 615 (1016)
Q Consensus 539 L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~---~~~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~~dd 615 (1016)
|+|+|++|+||+..+..|.+||||++.+++ ..++|++++++.||+|||+|.|.+.......|.|+|||+|. + +|+
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~-~-~~~ 79 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDY-V-MDD 79 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCC-C-CCc
Confidence 899999999999999999999999999863 45899999999999999999998866556689999999998 7 899
Q ss_pred eeeEEEEEceecCCCCceeEEEECCcCCcCcccceEEEEEEEe
Q 001764 616 SLGHAEINFVKSDISDLADVWIPLQGKLAQACQSKLHLRIFLN 658 (1016)
Q Consensus 616 ~lG~~~i~l~~~~~~~~~~~w~~L~~~~~~~~~g~l~l~~~~~ 658 (1016)
+||++.+++.++..+...+.|++|..+ ..|+|++++.++
T Consensus 80 ~iG~~~~~l~~l~~g~~~~~~~~L~~~----~~g~l~~~~~~~ 118 (119)
T cd04036 80 HLGTVLFDVSKLKLGEKVRVTFSLNPQ----GKEELEVEFLLE 118 (119)
T ss_pred ccEEEEEEHHHCCCCCcEEEEEECCCC----CCceEEEEEEee
Confidence 999999999999988889999999754 368899988875
No 19
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.77 E-value=2.9e-18 Score=164.09 Aligned_cols=115 Identities=26% Similarity=0.410 Sum_probs=100.3
Q ss_pred EEEEEEEeec---CCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCCC-----
Q 001764 3 LVVRVIEARN---IPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYF----- 74 (1016)
Q Consensus 3 L~V~V~~Ar~---L~~~d~~g~~dPyv~v~~~~~k~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~v~V~D~d~~~----- 74 (1016)
|+|+|++|+| |+++|..|.+||||.+.+++++.||+++++++||+|||+|.|.+.+....|.|+|||++.++
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~ 81 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAV 81 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccccccC
Confidence 8999999999 89999999999999999999999999999999999999999999777779999999999873
Q ss_pred -CCceeEEEEeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEE
Q 001764 75 -NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILL 121 (1016)
Q Consensus 75 -~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l 121 (1016)
+|++||++.++|..+..+. ....||+|....++. .+..|+|++
T Consensus 82 ~~dd~lG~~~i~l~~l~~~~---~~~~~~~L~~~~~~~-~~~~g~l~~ 125 (126)
T cd08379 82 QPDVLIGKVRIRLSTLEDDR---VYAHSYPLLSLNPSG-VKKMGELEC 125 (126)
T ss_pred CCCceEEEEEEEHHHccCCC---EEeeEEEeEeCCCCC-ccCCcEEEe
Confidence 8999999999999986432 357899999765432 356788865
No 20
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.77 E-value=3e-18 Score=162.48 Aligned_cols=102 Identities=20% Similarity=0.345 Sum_probs=89.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeeeecCCCCCCCeeeEEEEEEeeCC---CCCeEEEEEEEcc
Q 001764 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNG-------KSRTSSIKFQQCDPMWNEIFEYDAMDE---PPSMLDVEVYDFD 608 (1016)
Q Consensus 539 L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~-------~~~~T~~~~~t~nP~WnE~f~f~~~~~---~~~~L~i~V~D~d 608 (1016)
|+|+|++|+||+.++ .|.+||||+|.+.| ++++|+++++++||+|||+|.|.+... ....|.|.|||+|
T Consensus 2 L~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 2 VTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred EEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 899999999999988 59999999999732 236899999999999999999998643 2356999999999
Q ss_pred CCCCCCceeeEEEEEceecCCCCceeEEEECCcC
Q 001764 609 GPFNEATSLGHAEINFVKSDISDLADVWIPLQGK 642 (1016)
Q Consensus 609 ~~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~~~ 642 (1016)
. .++|++||++.+++.++..++..+.|++|...
T Consensus 81 ~-~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~ 113 (120)
T cd08395 81 F-ARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR 113 (120)
T ss_pred c-cCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence 8 78899999999999999988888999999764
No 21
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.77 E-value=3.6e-18 Score=165.79 Aligned_cols=120 Identities=23% Similarity=0.414 Sum_probs=105.2
Q ss_pred eEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCeeeeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCCCC
Q 001764 537 WLLTVALIKGDNLAAVDS--SGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEA 614 (1016)
Q Consensus 537 ~~L~V~v~~A~~L~~~d~--~g~sDPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~~d 614 (1016)
|+|+|+|++|+||+.++. .|.+||||++.++++.++|++++++.||.|||.|.|.+.....+.|.|+|||+|. .+.+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~-~~~~ 79 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDR-FAGK 79 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCC-CCCC
Confidence 469999999999999998 8999999999999999999999999999999999998866567899999999998 7889
Q ss_pred ceeeEEEEEceecC---CCCceeEEEECCcCCc---CcccceEEEEEEE
Q 001764 615 TSLGHAEINFVKSD---ISDLADVWIPLQGKLA---QACQSKLHLRIFL 657 (1016)
Q Consensus 615 d~lG~~~i~l~~~~---~~~~~~~w~~L~~~~~---~~~~g~l~l~~~~ 657 (1016)
++||++.+++.++. .....+.|++|.++.. ....|+|+|++.+
T Consensus 80 ~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 80 DYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 99999999999976 3344689999986532 2358999999864
No 22
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.76 E-value=8.1e-18 Score=164.35 Aligned_cols=118 Identities=20% Similarity=0.315 Sum_probs=102.7
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCCCC
Q 001764 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEA 614 (1016)
Q Consensus 535 ~~~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~~d 614 (1016)
..|.|+|+|++|++|+.+|..|.+||||++.++++.++|++++++.||.|||+|.|.+.......|.|+|||+|. +++|
T Consensus 13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~-~~~d 91 (136)
T cd08375 13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDF-FSPD 91 (136)
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCC-CCCC
Confidence 457899999999999999999999999999999999999999999999999999998866556789999999998 8899
Q ss_pred ceeeEEEEEceecCC-----CCceeEEEECCcCCcCcccceEEEEEEE
Q 001764 615 TSLGHAEINFVKSDI-----SDLADVWIPLQGKLAQACQSKLHLRIFL 657 (1016)
Q Consensus 615 d~lG~~~i~l~~~~~-----~~~~~~w~~L~~~~~~~~~g~l~l~~~~ 657 (1016)
++||++.+++.++.. ......|+.|.+ ...|.|+|++.+
T Consensus 92 ~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~----~~~g~i~l~~~~ 135 (136)
T cd08375 92 DFLGRTEIRVADILKETKESKGPITKRLLLHE----VPTGEVVVKLDL 135 (136)
T ss_pred CeeEEEEEEHHHhccccccCCCcEEEEecccc----ccceeEEEEEEe
Confidence 999999999999765 333356777753 346899999876
No 23
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.76 E-value=5.6e-18 Score=162.76 Aligned_cols=115 Identities=27% Similarity=0.509 Sum_probs=102.7
Q ss_pred eEEEEEEEEeecCCCCCC------CCCCCcEEEEEECCeeeeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCC
Q 001764 537 WLLTVALIKGDNLAAVDS------SGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGP 610 (1016)
Q Consensus 537 ~~L~V~v~~A~~L~~~d~------~g~sDPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~ 610 (1016)
|+|+|+|++|+||+.+|. .|.+||||++.++++.++|++++++.||.|||.|.|.+.....+.|.|+|||+|.
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~- 79 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDP- 79 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCC-
Confidence 469999999999999875 3789999999999988999999999999999999998876667899999999998
Q ss_pred CCCCceeeEEEEEceecCCCCceeEEEECCcCCcCcccceEEEEEEE
Q 001764 611 FNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQACQSKLHLRIFL 657 (1016)
Q Consensus 611 ~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~~~~~~~~~g~l~l~~~~ 657 (1016)
. ++++||++.+++.++..++..+.|++|.+. .+|+|+|++++
T Consensus 80 ~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~----~~G~~~~~~~~ 121 (121)
T cd08391 80 D-KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV----KSGRLHLKLEW 121 (121)
T ss_pred C-CCCcEEEEEEEHHHhcccCccceEEECcCC----CCceEEEEEeC
Confidence 6 889999999999998877778999999753 46899998764
No 24
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.76 E-value=5.1e-18 Score=162.55 Aligned_cols=117 Identities=21% Similarity=0.271 Sum_probs=101.0
Q ss_pred EEEEEEEeecCCCCC-CCCCCCcEEEEEECCee-eeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCCCCce
Q 001764 539 LTVALIKGDNLAAVD-SSGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATS 616 (1016)
Q Consensus 539 L~V~v~~A~~L~~~d-~~g~sDPyv~v~~~~~~-~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~~dd~ 616 (1016)
|+|+|++|+||++++ ..|.+||||.|.++++. ++|+++++|+||.|||+|.|.+... ...|.|.|||+|. +++|++
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~-~~~~~~ 79 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDV-LRRDSV 79 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCC-CCCCce
Confidence 789999999999974 46889999999998764 8999999999999999999987543 5799999999999 889999
Q ss_pred eeEEEEEceecCCCCceeEEEECCcCC-cCcccceEEEEEEE
Q 001764 617 LGHAEINFVKSDISDLADVWIPLQGKL-AQACQSKLHLRIFL 657 (1016)
Q Consensus 617 lG~~~i~l~~~~~~~~~~~w~~L~~~~-~~~~~g~l~l~~~~ 657 (1016)
||.+.++++++..++..+.|++|.... ....+|+|||++.+
T Consensus 80 iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 80 IGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred EEEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 999999999998777789999998532 22358999998753
No 25
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.76 E-value=9.1e-18 Score=162.99 Aligned_cols=124 Identities=31% Similarity=0.568 Sum_probs=108.0
Q ss_pred EEEEEEEEeecCCCCCC--CCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeC-CCCEEEEEEEecCCCCCCce
Q 001764 2 KLVVRVIEARNIPAMDQ--NGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVED-LKDELVISVLDEDKYFNDDF 78 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~--~g~~dPyv~v~~~~~k~kTkvi~~t~nP~WnE~f~f~v~~-~~~~L~v~V~D~d~~~~d~~ 78 (1016)
.|+|+|++|++|+..+. .+.+||||.+.++.++.+|+++++++||.|||+|.|.+.. ....|.|+|||++.++++++
T Consensus 2 ~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~~ 81 (128)
T cd04024 2 VLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKDY 81 (128)
T ss_pred EEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCCc
Confidence 48999999999999998 8899999999999999999999999999999999999965 56899999999999889999
Q ss_pred eEEEEeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEEEE
Q 001764 79 VGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (1016)
Q Consensus 79 lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~ 125 (1016)
||++.+++.++...........||.|.++....+....|+|+|++++
T Consensus 82 lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 82 LGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred ceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 99999999998743233346789999987544445689999999863
No 26
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.76 E-value=1e-17 Score=160.48 Aligned_cols=118 Identities=27% Similarity=0.464 Sum_probs=101.5
Q ss_pred EEEEEEEeecCCCCC-CCCCCCcEEEEEECCe-EEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCCCCCceeE
Q 001764 3 LVVRVIEARNIPAMD-QNGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVG 80 (1016)
Q Consensus 3 L~V~V~~Ar~L~~~d-~~g~~dPyv~v~~~~~-k~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~v~V~D~d~~~~d~~lG 80 (1016)
|.|+|++|+||++.+ .+|.+||||.+.++++ ..+|+++++++||+|||+|.|.+.+....|.|.|||++.++++++||
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG 81 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG 81 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence 789999999999874 4678999999999865 58999999999999999999999766689999999999999999999
Q ss_pred EEEeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEEEE
Q 001764 81 FLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (1016)
Q Consensus 81 ~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~ 125 (1016)
++.+++.++... .....||+|++.... .+.+|+|+|+++|
T Consensus 82 ~~~i~l~~l~~~---~~~~~w~~L~~~~~~--~~~~G~i~l~~~~ 121 (121)
T cd08401 82 KVAIKKEDLHKY---YGKDTWFPLQPVDAD--SEVQGKVHLELRL 121 (121)
T ss_pred EEEEEHHHccCC---CCcEeeEEEEccCCC--CcccEEEEEEEEC
Confidence 999999998642 235789999976432 2468999999874
No 27
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.75 E-value=1e-17 Score=160.49 Aligned_cols=116 Identities=34% Similarity=0.586 Sum_probs=101.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeC-CCCEEEEEEEecCCCCCCceeEE
Q 001764 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVED-LKDELVISVLDEDKYFNDDFVGF 81 (1016)
Q Consensus 3 L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~~k~kTkvi~~t~nP~WnE~f~f~v~~-~~~~L~v~V~D~d~~~~d~~lG~ 81 (1016)
|.|+|++|+||+.+ .+||||++.+++++.+|++++++.||+|||+|.|.+.. ....|.++|||++.+ ++++||+
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~ 76 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGG 76 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeee
Confidence 78999999999887 69999999999999999999999999999999999965 567899999999986 7899999
Q ss_pred EEeecccccccC--CCCCccEEEEccCCCCCCCCCcceEEEEEEEEE
Q 001764 82 LKIPVSRVFDAD--NKSLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (1016)
Q Consensus 82 ~~v~l~~l~~~~--~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~ 126 (1016)
+.+++.++.... ++....+||+|.+..+ .+.+|+|+|.+.|.
T Consensus 77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~---~~~~G~i~l~~~~~ 120 (121)
T cd08378 77 VCFDLSEVPTRVPPDSPLAPQWYRLEDKKG---GRVGGELMLAVWFG 120 (121)
T ss_pred EEEEhHhCcCCCCCCCCCCcceEEccCCCC---CccceEEEEEEEec
Confidence 999999986432 2334578999998654 36789999999873
No 28
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.75 E-value=3.3e-18 Score=165.34 Aligned_cols=94 Identities=31% Similarity=0.490 Sum_probs=87.4
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCCCCc
Q 001764 536 GWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEAT 615 (1016)
Q Consensus 536 ~~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~~dd 615 (1016)
-|.|+|+|++|.||..+|..++|||||++++++++.+|+++++++||+|||.|+|.+. ++...|.++|||+|. +++||
T Consensus 5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~-d~~~~lkv~VyD~D~-fs~dD 82 (168)
T KOG1030|consen 5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVK-DPNTPLKVTVYDKDT-FSSDD 82 (168)
T ss_pred ceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEec-CCCceEEEEEEeCCC-CCccc
Confidence 4679999999999999998899999999999999999999999999999999999765 458899999999999 99999
Q ss_pred eeeEEEEEceecCCCC
Q 001764 616 SLGHAEINFVKSDISD 631 (1016)
Q Consensus 616 ~lG~~~i~l~~~~~~~ 631 (1016)
++|.|+|+|..+....
T Consensus 83 ~mG~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 83 FMGEATIPLKPLLEAQ 98 (168)
T ss_pred ccceeeeccHHHHHHh
Confidence 9999999999976554
No 29
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.75 E-value=1.3e-17 Score=159.65 Aligned_cols=113 Identities=24% Similarity=0.355 Sum_probs=99.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCCCCceee
Q 001764 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLG 618 (1016)
Q Consensus 539 L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~~dd~lG 618 (1016)
|+|+|++|+||+.+ .+||||++.++++..+|++++++.||.|||+|.|.+.......|.|+|||+|. . ++++||
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~-~-~~~~lG 75 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDK-A-KDDFLG 75 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCC-C-cCceee
Confidence 89999999999988 79999999999988999999999999999999998755457789999999998 6 788999
Q ss_pred EEEEEceecCCCC-----ceeEEEECCcCCcCcccceEEEEEEE
Q 001764 619 HAEINFVKSDISD-----LADVWIPLQGKLAQACQSKLHLRIFL 657 (1016)
Q Consensus 619 ~~~i~l~~~~~~~-----~~~~w~~L~~~~~~~~~g~l~l~~~~ 657 (1016)
++.++++++.... ..+.||+|....+....|+|+|.+.+
T Consensus 76 ~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~ 119 (121)
T cd08378 76 GVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF 119 (121)
T ss_pred eEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence 9999999976532 24799999876555568999999876
No 30
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.74 E-value=1.7e-17 Score=159.91 Aligned_cols=116 Identities=28% Similarity=0.513 Sum_probs=101.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCCCCceee
Q 001764 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLG 618 (1016)
Q Consensus 539 L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~~dd~lG 618 (1016)
|+|+|++|++|+.++..|.+||||+|.+++...+|+++++++||.|||+|.|.+.......|.|+|||+|. ++++++||
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~-~~~~~~iG 80 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDL-VSKNDFLG 80 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCC-CCCCcEeE
Confidence 89999999999999999999999999999999999999999999999999998866556789999999998 88899999
Q ss_pred EEEEEceecCCCCceeEEEECCcCC-----cCcccceEEEEE
Q 001764 619 HAEINFVKSDISDLADVWIPLQGKL-----AQACQSKLHLRI 655 (1016)
Q Consensus 619 ~~~i~l~~~~~~~~~~~w~~L~~~~-----~~~~~g~l~l~~ 655 (1016)
++.+++.++..+...+.|+.|.... .....|.|+|.+
T Consensus 81 ~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 81 KVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 9999999987777779999998522 223467777765
No 31
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.74 E-value=2.1e-17 Score=161.55 Aligned_cols=122 Identities=30% Similarity=0.551 Sum_probs=105.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------EEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCCC
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ-------RFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYF 74 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~~-------k~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~v~V~D~d~~~ 74 (1016)
.|+|+|++|++|+..+..|.+||||++.+++. +.+|+++++++||+|||+|.|.+......|.|+|||++.++
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~ 80 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT 80 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence 38999999999999998899999999999754 57999999999999999999999766778999999999999
Q ss_pred CCceeEEEEeecccccccCCC---CCccEEEEccCCCCCCCCCcceEEEEEEEE
Q 001764 75 NDDFVGFLKIPVSRVFDADNK---SLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (1016)
Q Consensus 75 ~d~~lG~~~v~l~~l~~~~~~---~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~ 125 (1016)
++++||++.+++.++...... ....+||+|.++.+. .+..|+|+|++.|
T Consensus 81 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~--~~~~G~l~~~~~~ 132 (133)
T cd04033 81 RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSK--SRVKGHLRLYMAY 132 (133)
T ss_pred CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCC--CcceeEEEEEEee
Confidence 999999999999999754322 245789999965433 3578999999987
No 32
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.74 E-value=3.3e-17 Score=158.30 Aligned_cols=116 Identities=16% Similarity=0.330 Sum_probs=99.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCee-eeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCCCCce
Q 001764 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATS 616 (1016)
Q Consensus 538 ~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~~-~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~~dd~ 616 (1016)
.|+|+|++|+||+.+ +.+||||+|.+++.+ .+|+++ ++.||.|||+|.|.+.+.....|.|.|||+|. .++|++
T Consensus 5 ~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~-~~~d~~ 79 (126)
T cd08400 5 SLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAK-RSKDSE 79 (126)
T ss_pred EEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCC-CCCCCe
Confidence 499999999999975 478999999998865 688875 68999999999997654434679999999998 889999
Q ss_pred eeEEEEEceecCCCCceeEEEECCcCC--cCcccceEEEEEEEe
Q 001764 617 LGHAEINFVKSDISDLADVWIPLQGKL--AQACQSKLHLRIFLN 658 (1016)
Q Consensus 617 lG~~~i~l~~~~~~~~~~~w~~L~~~~--~~~~~g~l~l~~~~~ 658 (1016)
||++.++|.++..+...+.|++|.+.. +....|+|+|++.|.
T Consensus 80 iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~ 123 (126)
T cd08400 80 IAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYS 123 (126)
T ss_pred EEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEE
Confidence 999999999988888889999998754 345579999999986
No 33
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.74 E-value=2.3e-17 Score=159.62 Aligned_cols=118 Identities=24% Similarity=0.398 Sum_probs=102.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC--eeeeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCCCCce
Q 001764 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNG--KSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATS 616 (1016)
Q Consensus 539 L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~--~~~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~~dd~ 616 (1016)
|.|+|++|+||+. ..|.+||||++.+++ ++++|+++++++||.|||.|.|.+.. ....|.|+|||+|. .++|++
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~-~~~~~~ 76 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGK-KSDSKF 76 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCC-CCCCce
Confidence 5799999999998 689999999999974 55899999999999999999998743 36789999999999 788999
Q ss_pred eeEEEEEceecCCCCceeEEEECCcCC--cCcccceEEEEEEEeec
Q 001764 617 LGHAEINFVKSDISDLADVWIPLQGKL--AQACQSKLHLRIFLNNT 660 (1016)
Q Consensus 617 lG~~~i~l~~~~~~~~~~~w~~L~~~~--~~~~~g~l~l~~~~~~~ 660 (1016)
||++.+++.++........|++|.++. +....|+|+|++.|...
T Consensus 77 lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 77 LGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred EEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 999999999988877789999998653 23458999999998643
No 34
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.74 E-value=3.1e-17 Score=164.40 Aligned_cols=118 Identities=22% Similarity=0.335 Sum_probs=101.2
Q ss_pred eEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEECCee-eeeecCCCCCCCeee
Q 001764 537 WLLTVALIKGDNLAAVD------------------------------SSGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWN 585 (1016)
Q Consensus 537 ~~L~V~v~~A~~L~~~d------------------------------~~g~sDPyv~v~~~~~~-~~T~~~~~t~nP~Wn 585 (1016)
|+|.|+|++|++|+.|| ..|.+||||+|.+++.+ .+|++++++.||+||
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~Wn 86 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWN 86 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccc
Confidence 57999999999999998 35779999999999866 699999999999999
Q ss_pred EEEEEEeeCCCCCeEEEEEEEccCCCCCCceeeEEEEEceecCCCCceeEEEECCcCCcC--cccceEEEEEEE
Q 001764 586 EIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQ--ACQSKLHLRIFL 657 (1016)
Q Consensus 586 E~f~f~~~~~~~~~L~i~V~D~d~~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~~~~~~--~~~g~l~l~~~~ 657 (1016)
|+|.|.+. ...+.|.|.|||+|. ++ +++||++.++++++..+...+.|++|.+..+. ...|+|||++.|
T Consensus 87 E~F~~~~~-~~~~~l~~~V~d~d~-~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 87 ESFHIYCA-HYASHVEFTVKDNDV-VG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred eEEEEEcc-CCCCEEEEEEEeCCC-cC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 99999764 446789999999998 64 57999999999999888888999999864333 346789998876
No 35
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.74 E-value=3.9e-17 Score=159.92 Aligned_cols=122 Identities=24% Similarity=0.474 Sum_probs=103.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeC----------CCCEEEEEEEecC
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVED----------LKDELVISVLDED 71 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~~k~kTkvi~~t~nP~WnE~f~f~v~~----------~~~~L~v~V~D~d 71 (1016)
+|+|+|++|++|+.++..|.+||||++.+++++.+|+++++++||+|||.|.|.+.. ....|.|+|||++
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 799999999999999999999999999999999999999999999999999998522 1257999999999
Q ss_pred CCCCCceeEEEEe-ecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEEEEEec
Q 001764 72 KYFNDDFVGFLKI-PVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (1016)
Q Consensus 72 ~~~~d~~lG~~~v-~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~~ 128 (1016)
..++|++||++.+ |+..+..........+||+|.... ...|+|+|++.+.+.
T Consensus 82 ~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~-----~~~Geil~~~~~~~~ 134 (135)
T cd04017 82 SVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGG-----QSAGELLAAFELIEV 134 (135)
T ss_pred CCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCC-----CchhheeEEeEEEEe
Confidence 9999999999986 655554433445678999997443 468999999999753
No 36
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.74 E-value=1.9e-17 Score=158.38 Aligned_cols=115 Identities=32% Similarity=0.550 Sum_probs=100.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccC-CCCCeeccEEEEEEeC-CCCEEEEEEEecCCCCCCcee
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRK-SLSPSWEEEFSFKVED-LKDELVISVLDEDKYFNDDFV 79 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~~k~kTkvi~~-t~nP~WnE~f~f~v~~-~~~~L~v~V~D~d~~~~d~~l 79 (1016)
+|+|+|++|++|+..+..+.+||||++.+++.+.+|+++.+ ++||+|||.|.|.+.. ....|.|+|||++..+ +++|
T Consensus 2 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~i 80 (118)
T cd08681 2 TLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDLI 80 (118)
T ss_pred EEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccce
Confidence 69999999999999999999999999999999999999865 7999999999999965 4578999999999866 8999
Q ss_pred EEEEeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEEEE
Q 001764 80 GFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (1016)
Q Consensus 80 G~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~ 125 (1016)
|++.+++.++...+ ....||+|.... +..|+|+|+++|
T Consensus 81 G~~~~~l~~~~~~~---~~~~w~~L~~~~-----~~~G~i~l~l~f 118 (118)
T cd08681 81 GDTEVDLSPALKEG---EFDDWYELTLKG-----RYAGEVYLELTF 118 (118)
T ss_pred EEEEEecHHHhhcC---CCCCcEEeccCC-----cEeeEEEEEEEC
Confidence 99999999986532 257899998643 468999999986
No 37
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.74 E-value=4.3e-17 Score=157.65 Aligned_cols=120 Identities=23% Similarity=0.459 Sum_probs=103.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC--eEEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCCCCCceeE
Q 001764 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGR--QRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVG 80 (1016)
Q Consensus 3 L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~--~k~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~v~V~D~d~~~~d~~lG 80 (1016)
|.|+|++|+||+. ..|.+||||++.++. ++.+|+++++++||+|||.|.|.+......|.|+|||++..+++++||
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG 78 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLG 78 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEE
Confidence 6799999999988 678999999999973 578999999999999999999999766788999999999988999999
Q ss_pred EEEeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEEEEEec
Q 001764 81 FLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (1016)
Q Consensus 81 ~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~~ 128 (1016)
++.+++.++...+ ....||+|.++... .....|+|.+.+.|...
T Consensus 79 ~~~i~l~~l~~~~---~~~~~~~L~~~~~~-~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 79 LAIVPFDELRKNP---SGRQIFPLQGRPYE-GDSVSGSITVEFLFMEP 122 (126)
T ss_pred EEEEeHHHhccCC---ceeEEEEecCCCCC-CCCcceEEEEEEEEecc
Confidence 9999999987543 24689999976432 24678999999999754
No 38
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.74 E-value=2.7e-17 Score=186.82 Aligned_cols=119 Identities=29% Similarity=0.468 Sum_probs=105.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCCCCCceeE
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVG 80 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~~-k~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~v~V~D~d~~~~d~~lG 80 (1016)
.|+|+|.+|+|||+.+..|.+||||.|.++.+ ..||.++.+++.|.|.|+|.|.++..-..|.|.|||.| +++|+.||
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~IG 84 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDIIG 84 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-cccccccc
Confidence 48999999999999999999999999999876 49999999999999999999999888899999999999 89999999
Q ss_pred EEEeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEEEEE
Q 001764 81 FLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (1016)
Q Consensus 81 ~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~ 126 (1016)
.+.|.-.++... .....|+.|++.... ..++|+|+|++.+.
T Consensus 85 Kvai~re~l~~~---~~~d~W~~L~~VD~d--sEVQG~v~l~l~~~ 125 (800)
T KOG2059|consen 85 KVAIKREDLHMY---PGKDTWFSLQPVDPD--SEVQGKVHLELALT 125 (800)
T ss_pred eeeeeHHHHhhC---CCCccceeccccCCC--hhhceeEEEEEEec
Confidence 999988888543 246789999987654 46889999988874
No 39
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.73 E-value=5.1e-17 Score=156.53 Aligned_cols=119 Identities=31% Similarity=0.561 Sum_probs=103.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCC-CCEEEEEEEecCCCCCCceeE
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDL-KDELVISVLDEDKYFNDDFVG 80 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~~k~kTkvi~~t~nP~WnE~f~f~v~~~-~~~L~v~V~D~d~~~~d~~lG 80 (1016)
+|+|+|++|++|+.++.++.+||||++.+++.+.+|+++++++||+|||+|.|.+... ...|.|+|||++.++++++||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG 80 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence 5899999999999999888999999999999999999999999999999999999554 578999999999989999999
Q ss_pred EEEeecccccccCCCCCccEEEEccCCCCC--CCCCcceEEEEEE
Q 001764 81 FLKIPVSRVFDADNKSLPTAWHSLQPKNKK--SKNKDCGEILLTI 123 (1016)
Q Consensus 81 ~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~--~~~~~~G~I~l~l 123 (1016)
++.+++.++.... ....||.|.+...+ ...+..|.|.+.|
T Consensus 81 ~~~~~l~~l~~~~---~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 81 KVVFSIQTLQQAK---QEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEHHHcccCC---CCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 9999999986432 24779999975433 2456789999876
No 40
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.73 E-value=8.2e-17 Score=155.64 Aligned_cols=120 Identities=20% Similarity=0.322 Sum_probs=105.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCCCCCceeEEE
Q 001764 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGFL 82 (1016)
Q Consensus 3 L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~~k~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~v~V~D~d~~~~d~~lG~~ 82 (1016)
|+|+|++|++|+..+.+|.+||||++.+++++++|++++++.||+|||.|.|.+.+....|.|+|||++.+ +|++||++
T Consensus 5 ~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d~~lG~~ 83 (126)
T cd04046 5 TQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CDEFLGQA 83 (126)
T ss_pred EEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC-CCCceEEE
Confidence 78999999999999999999999999999999999999999999999999999977788999999999986 48999999
Q ss_pred EeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEEEEEec
Q 001764 83 KIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (1016)
Q Consensus 83 ~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~~ 128 (1016)
.+++..+. .....|++|..+..+.++...|+|.+.+.+.+.
T Consensus 84 ~~~l~~~~-----~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~ 124 (126)
T cd04046 84 TLSADPND-----SQTLRTLPLRKRGRDAAGEVPGTISVKVTSSDD 124 (126)
T ss_pred EEecccCC-----CcCceEEEcccCCCCCCCCCCCEEEEEEEEccc
Confidence 99998752 234689999865555667889999999987643
No 41
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.73 E-value=6.8e-17 Score=154.00 Aligned_cols=113 Identities=34% Similarity=0.618 Sum_probs=101.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCC-CCEEEEEEEecCCCCCCceeEE
Q 001764 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDL-KDELVISVLDEDKYFNDDFVGF 81 (1016)
Q Consensus 3 L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~~k~kTkvi~~t~nP~WnE~f~f~v~~~-~~~L~v~V~D~d~~~~d~~lG~ 81 (1016)
|+|+|++|++|++.+.++.+||||++.+++++.+|+++++++||.|||+|.|.+.+. ...|.|+|||++.++++++||+
T Consensus 2 ~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG~ 81 (116)
T cd08376 2 VTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIGR 81 (116)
T ss_pred EEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEEE
Confidence 789999999999999889999999999999999999999999999999999999654 6899999999999889999999
Q ss_pred EEeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEEEEE
Q 001764 82 LKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (1016)
Q Consensus 82 ~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~ 126 (1016)
+.++|.++... .....|++|.+. .|+|++.+.|.
T Consensus 82 ~~~~l~~l~~~---~~~~~w~~L~~~--------~G~~~~~~~~~ 115 (116)
T cd08376 82 CEIDLSALPRE---QTHSLELELEDG--------EGSLLLLLTLT 115 (116)
T ss_pred EEEeHHHCCCC---CceEEEEEccCC--------CcEEEEEEEec
Confidence 99999998643 346789999852 59999998874
No 42
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.73 E-value=1.4e-17 Score=160.88 Aligned_cols=91 Identities=44% Similarity=0.749 Sum_probs=87.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCCCCCceeEE
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGF 81 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~~k~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~v~V~D~d~~~~d~~lG~ 81 (1016)
.|+|+|++|.||..+|..+++||||.+++++++.+|+++.+++||+|||+|.|.+.++...|.+.|||+|.++.|||+|.
T Consensus 7 LL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~mG~ 86 (168)
T KOG1030|consen 7 LLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDFMGE 86 (168)
T ss_pred EEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCcccccce
Confidence 48999999999999998899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccccc
Q 001764 82 LKIPVSRVFDA 92 (1016)
Q Consensus 82 ~~v~l~~l~~~ 92 (1016)
+.|+|..++..
T Consensus 87 A~I~l~p~~~~ 97 (168)
T KOG1030|consen 87 ATIPLKPLLEA 97 (168)
T ss_pred eeeccHHHHHH
Confidence 99999999764
No 43
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.73 E-value=2.1e-17 Score=158.58 Aligned_cols=102 Identities=28% Similarity=0.429 Sum_probs=90.8
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeecCCCCCCCeeeEEEEEEeeC---CCCCeEEEEEEEc
Q 001764 536 GWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNG-----KSRTSSIKFQQCDPMWNEIFEYDAMD---EPPSMLDVEVYDF 607 (1016)
Q Consensus 536 ~~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~~~~---~~~~~L~i~V~D~ 607 (1016)
.+.|.|+|++|+||+.++ .|.+||||++.+.. .+++|++++++.||.|||+|.|.+.+ .....|.|+|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 356999999999999999 99999999999863 34899999999999999999998622 2456899999999
Q ss_pred cCCCCCCceeeEEEEEceecCCCCceeEEEEC
Q 001764 608 DGPFNEATSLGHAEINFVKSDISDLADVWIPL 639 (1016)
Q Consensus 608 d~~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L 639 (1016)
|. ++++++||++.++|.++......+.||+|
T Consensus 91 d~-~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DS-LVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CC-CcCCcEEEEEEEeccccccCCCccceEEC
Confidence 99 88999999999999999887778999998
No 44
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.73 E-value=5.2e-17 Score=155.85 Aligned_cols=116 Identities=20% Similarity=0.364 Sum_probs=100.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCee-eeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCCCCcee
Q 001764 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSL 617 (1016)
Q Consensus 539 L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~~-~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~~dd~l 617 (1016)
|.|+|++|+||+.+|..|.+||||++.++++. .+|+++.+++||.|||.|.|.+.. ....|.|+|||+|. +++|++|
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~~l~v~v~d~~~-~~~d~~i 79 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPP-GFHTVSFYVLDEDT-LSRDDVI 79 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCC-CCCEEEEEEEECCC-CCCCCEE
Confidence 89999999999999999999999999998875 799999999999999999998743 35799999999998 8899999
Q ss_pred eEEEEEceecCCC-CceeEEEECCcCC-cCcccceEEEEEE
Q 001764 618 GHAEINFVKSDIS-DLADVWIPLQGKL-AQACQSKLHLRIF 656 (1016)
Q Consensus 618 G~~~i~l~~~~~~-~~~~~w~~L~~~~-~~~~~g~l~l~~~ 656 (1016)
|++.+++.++..+ ...+.|++|.+.. .....|+|+|.+.
T Consensus 80 G~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 80 GKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 9999999887653 3468999998632 3345789988865
No 45
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.72 E-value=8.6e-17 Score=157.14 Aligned_cols=117 Identities=35% Similarity=0.637 Sum_probs=100.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCC-CCEEEEEEEecCCCCCCceeE
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDL-KDELVISVLDEDKYFNDDFVG 80 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~~k~kTkvi~~t~nP~WnE~f~f~v~~~-~~~L~v~V~D~d~~~~d~~lG 80 (1016)
+|+|+|++|++|++.+..|.+||||++.+++++++|+++++++||.|||+|.|.+.+. ...|.|+|||++.+++|++||
T Consensus 16 ~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~~lG 95 (136)
T cd08375 16 RLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDFLG 95 (136)
T ss_pred EEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCCeeE
Confidence 5899999999999999999999999999999999999999999999999999999653 578999999999989999999
Q ss_pred EEEeecccccccCCCCC--ccEEEEccCCCCCCCCCcceEEEEEEEE
Q 001764 81 FLKIPVSRVFDADNKSL--PTAWHSLQPKNKKSKNKDCGEILLTISF 125 (1016)
Q Consensus 81 ~~~v~l~~l~~~~~~~~--~~~w~~L~~~~~~~~~~~~G~I~l~l~~ 125 (1016)
++.+++.++........ ...|..|. ....|+|+|.+.+
T Consensus 96 ~~~i~l~~l~~~~~~~~~~~~~~~~~~-------~~~~g~i~l~~~~ 135 (136)
T cd08375 96 RTEIRVADILKETKESKGPITKRLLLH-------EVPTGEVVVKLDL 135 (136)
T ss_pred EEEEEHHHhccccccCCCcEEEEeccc-------cccceeEEEEEEe
Confidence 99999999975322222 23455553 2467999999986
No 46
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.72 E-value=2.5e-17 Score=162.41 Aligned_cols=101 Identities=25% Similarity=0.404 Sum_probs=88.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeecCCCCCCCeeeEEEEEEeeC--------------C-CCC
Q 001764 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNG-----KSRTSSIKFQQCDPMWNEIFEYDAMD--------------E-PPS 598 (1016)
Q Consensus 539 L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~~~~--------------~-~~~ 598 (1016)
|+|+|++|+||+. .+|.+||||+|.+.+ .+++|+++++++||+|||+|.|.+.. + ...
T Consensus 2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd04010 2 LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79 (148)
T ss_pred EEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence 8999999999998 578999999999976 45899999999999999999998841 1 235
Q ss_pred eEEEEEEEccCCCCCCceeeEEEEEceecCCC-CceeEEEECCcC
Q 001764 599 MLDVEVYDFDGPFNEATSLGHAEINFVKSDIS-DLADVWIPLQGK 642 (1016)
Q Consensus 599 ~L~i~V~D~d~~~~~dd~lG~~~i~l~~~~~~-~~~~~w~~L~~~ 642 (1016)
.|.|.|||++. +++|+|||++.|++..+..+ ...+.||+|..+
T Consensus 80 ~L~i~V~d~~~-~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~ 123 (148)
T cd04010 80 ELRVDLWHASM-GGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPR 123 (148)
T ss_pred EEEEEEEcCCC-CCCCceeEEEEEecccccccCCcCcceeecCCc
Confidence 79999999998 78999999999999998876 567999999754
No 47
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.72 E-value=1.1e-16 Score=153.42 Aligned_cols=117 Identities=34% Similarity=0.625 Sum_probs=104.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCCCCCceeEE
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGF 81 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~~k~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~v~V~D~d~~~~d~~lG~ 81 (1016)
.|+|+|++|++|+..+.++.+||||++.+++...+|++++++.||.|||+|.|.+.+....|.|+|||++.++++++||+
T Consensus 2 ~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG~ 81 (119)
T cd08377 2 FLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLGK 81 (119)
T ss_pred EEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceeeE
Confidence 58999999999999999999999999999998999999999999999999999997767899999999999889999999
Q ss_pred EEeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEEEE
Q 001764 82 LKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (1016)
Q Consensus 82 ~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~ 125 (1016)
+.+++.++..+ ...||.|.+.... ....|+|.|.+.+
T Consensus 82 ~~~~l~~~~~~-----~~~~~~l~~~~~~--~~~~G~i~l~~~~ 118 (119)
T cd08377 82 VAIPLLSIKNG-----ERKWYALKDKKLR--TRAKGSILLEMDV 118 (119)
T ss_pred EEEEHHHCCCC-----CceEEECcccCCC--CceeeEEEEEEEe
Confidence 99999998542 3679999876433 3478999999876
No 48
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.72 E-value=4.5e-17 Score=159.23 Aligned_cols=117 Identities=23% Similarity=0.281 Sum_probs=100.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------eeeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCC
Q 001764 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGK-------SRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPF 611 (1016)
Q Consensus 539 L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~-------~~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~ 611 (1016)
|+|+|++|+||+.+|..|.+||||++.+.+. .++|++++++.||.|||+|.|.+... ...|.|+|||+|. +
T Consensus 2 L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~-~ 79 (133)
T cd04033 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENR-L 79 (133)
T ss_pred EEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCC-C
Confidence 8999999999999999999999999999765 37899999999999999999987543 5689999999998 8
Q ss_pred CCCceeeEEEEEceecCCCCc------eeEEEECCcCC-cCcccceEEEEEEE
Q 001764 612 NEATSLGHAEINFVKSDISDL------ADVWIPLQGKL-AQACQSKLHLRIFL 657 (1016)
Q Consensus 612 ~~dd~lG~~~i~l~~~~~~~~------~~~w~~L~~~~-~~~~~g~l~l~~~~ 657 (1016)
+++++||++.+++.++..... ...||+|.+.. .....|.|+|++.|
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 899999999999999776543 36899998643 23458999999876
No 49
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.72 E-value=9.3e-17 Score=153.79 Aligned_cols=117 Identities=25% Similarity=0.432 Sum_probs=102.4
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCCCCce
Q 001764 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATS 616 (1016)
Q Consensus 537 ~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~~dd~ 616 (1016)
|.|+|+|++|+||+.++..+.+||||++.+++...+|++++++.||.|||+|.|.+. +....|.|+|||++. .+++++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~-~~~~~l~~~v~d~~~-~~~~~~ 78 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIK-DIHDVLEVTVYDEDK-DKKPEF 78 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEec-CcCCEEEEEEEECCC-CCCCce
Confidence 359999999999999999999999999999998899999999999999999999764 346789999999998 789999
Q ss_pred eeEEEEEceecCCCCceeEEEECCcCCc-CcccceEEEEEEE
Q 001764 617 LGHAEINFVKSDISDLADVWIPLQGKLA-QACQSKLHLRIFL 657 (1016)
Q Consensus 617 lG~~~i~l~~~~~~~~~~~w~~L~~~~~-~~~~g~l~l~~~~ 657 (1016)
||++.+++.++..+ ...|++|..+.. ....|+|+|++.+
T Consensus 79 iG~~~~~l~~~~~~--~~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 79 LGKVAIPLLSIKNG--ERKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred eeEEEEEHHHCCCC--CceEEECcccCCCCceeeEEEEEEEe
Confidence 99999999998654 378999986533 3358999998875
No 50
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.72 E-value=3.5e-17 Score=161.39 Aligned_cols=118 Identities=36% Similarity=0.522 Sum_probs=96.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEe---------------C-CC
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVE---------------D-LK 60 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~-----~k~kTkvi~~t~nP~WnE~f~f~v~---------------~-~~ 60 (1016)
+|.|+|++|+||+. .+|.+||||+|.+.+ ++++|+++++++||+|||+|.|.+. + ..
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 58999999999998 568999999999975 5789999999999999999999984 1 12
Q ss_pred CEEEEEEEecCCCCCCceeEEEEeecccccccCCCCCccEEEEccCCCCCC--------CCCcceEEEEEE
Q 001764 61 DELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKS--------KNKDCGEILLTI 123 (1016)
Q Consensus 61 ~~L~v~V~D~d~~~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~--------~~~~~G~I~l~l 123 (1016)
..|.|.|||++.+++|+|||++.|++..+... ......||+|.++..++ +....|.|+|.+
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~--~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQ--AGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI 147 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEeccccccc--CCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence 57999999999988999999999999998653 12357899999875432 223457777654
No 51
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.72 E-value=9.6e-17 Score=155.37 Aligned_cols=118 Identities=23% Similarity=0.467 Sum_probs=102.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe---eeeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCCCC
Q 001764 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGK---SRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEA 614 (1016)
Q Consensus 538 ~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~---~~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~~d 614 (1016)
.|+|+|++|+||+.++..|.+||||++.+++. .++|+++.+++||.|||+|.|.+.......|.|+|||+|. ++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~-~~~~ 80 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSF-VGKH 80 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCC-CCCC
Confidence 48999999999999999999999999998653 4899999999999999999998866556789999999998 7889
Q ss_pred ceeeEEEEEceecCC---CCceeEEEECCcCCcCcccceEEEEEEEeecCC
Q 001764 615 TSLGHAEINFVKSDI---SDLADVWIPLQGKLAQACQSKLHLRIFLNNTKG 662 (1016)
Q Consensus 615 d~lG~~~i~l~~~~~---~~~~~~w~~L~~~~~~~~~g~l~l~~~~~~~~~ 662 (1016)
++||++.++|..+.. +...+.|++|.+ +|+++|++.+...++
T Consensus 81 ~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~------~g~i~l~~~~~~~~~ 125 (126)
T cd04043 81 DLCGRASLKLDPKRFGDDGLPREIWLDLDT------QGRLLLRVSMEGERD 125 (126)
T ss_pred ceEEEEEEecCHHHcCCCCCCceEEEEcCC------CCeEEEEEEEeeecc
Confidence 999999999987532 345689999974 578999999986654
No 52
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.71 E-value=3.2e-17 Score=153.27 Aligned_cols=101 Identities=18% Similarity=0.317 Sum_probs=86.9
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eeeeeecCCCCCCCeeeEEEEEEeeCC--CCCeEEEEEEEcc
Q 001764 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNG----KSRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDFD 608 (1016)
Q Consensus 535 ~~~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~----~~~~T~~~~~t~nP~WnE~f~f~~~~~--~~~~L~i~V~D~d 608 (1016)
..+.|+|+|++|+||+ ..|.+||||++.+.. .+++|+++++|+||+|||+|.|++..+ ....|.|.|||+|
T Consensus 12 ~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~D 88 (118)
T cd08677 12 QKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCD 88 (118)
T ss_pred cCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCC
Confidence 4457999999999999 347799999999853 358999999999999999999988442 4567999999999
Q ss_pred CCCCCCceeeEEEEEceecCCCCceeEEEEC
Q 001764 609 GPFNEATSLGHAEINFVKSDISDLADVWIPL 639 (1016)
Q Consensus 609 ~~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L 639 (1016)
+ ++++|+||++.+++.++..+.+.+.|-.|
T Consensus 89 r-fs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 89 R-FSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred C-CCCCceEEEEEEccccccCCccccchhcC
Confidence 9 99999999999999998777777888765
No 53
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.71 E-value=5.6e-17 Score=151.54 Aligned_cols=100 Identities=26% Similarity=0.328 Sum_probs=90.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCCCCceee
Q 001764 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLG 618 (1016)
Q Consensus 539 L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~~dd~lG 618 (1016)
|.|+|++|+||+..+..|.+||||+++++++.++|++++++.||+|||.|.|.+..+..+.|.|+|||++. +++||
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~----~~~iG 77 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT----GKSLG 77 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC----CCccE
Confidence 89999999999999999999999999999999999999999999999999999876557789999999874 78999
Q ss_pred EEEEEceecCCCC--ceeEEEECCcC
Q 001764 619 HAEINFVKSDISD--LADVWIPLQGK 642 (1016)
Q Consensus 619 ~~~i~l~~~~~~~--~~~~w~~L~~~ 642 (1016)
++.++|.++.... ..+.||+|.++
T Consensus 78 ~~~i~l~~l~~~~~~~~~~w~~L~~~ 103 (105)
T cd04050 78 SLTLPLSELLKEPDLTLDQPFPLDNS 103 (105)
T ss_pred EEEEEHHHhhccccceeeeeEecCCC
Confidence 9999999976543 56899999865
No 54
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.71 E-value=7.7e-17 Score=157.92 Aligned_cols=106 Identities=24% Similarity=0.342 Sum_probs=93.1
Q ss_pred eEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC--e---eeeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEE-EccC
Q 001764 537 WLLTVALIKGDNLAAVD-SSGFCDPYVVFTCNG--K---SRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVY-DFDG 609 (1016)
Q Consensus 537 ~~L~V~v~~A~~L~~~d-~~g~sDPyv~v~~~~--~---~~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~-D~d~ 609 (1016)
+.|.|+|++|+||++++ ..|.+||||++.+.. + +++|+++++++||+|||+|.|.+. .....|.|+|| |++.
T Consensus 29 ~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~~ 107 (146)
T cd04028 29 GQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYGR 107 (146)
T ss_pred CEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCCCC
Confidence 46999999999999874 678999999999842 2 489999999999999999999886 55778999999 6888
Q ss_pred CCCCCceeeEEEEEceecCCCCceeEEEECCcCCc
Q 001764 610 PFNEATSLGHAEINFVKSDISDLADVWIPLQGKLA 644 (1016)
Q Consensus 610 ~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~~~~~ 644 (1016)
++++++||++.|+|+++..+.....||+|..+..
T Consensus 108 -~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~~ 141 (146)
T cd04028 108 -MDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTSS 141 (146)
T ss_pred -CCCCceEEEEEEEcccccCCCCceeEEecCCccc
Confidence 8899999999999999987777899999986543
No 55
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.71 E-value=1.7e-16 Score=154.79 Aligned_cols=114 Identities=25% Similarity=0.397 Sum_probs=100.8
Q ss_pred eEEEEEEEEeecCCCCCCC----------CCCCcEEEEEECCee-eeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEE
Q 001764 537 WLLTVALIKGDNLAAVDSS----------GFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVY 605 (1016)
Q Consensus 537 ~~L~V~v~~A~~L~~~d~~----------g~sDPyv~v~~~~~~-~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~ 605 (1016)
|.|+|+|++|+||+..|.. |.+||||++.++++. .+|+++.++.||.|||+|.|.+. ....|.|.||
T Consensus 4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~~v~ 81 (132)
T cd04014 4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH--NGRNLELTVF 81 (132)
T ss_pred eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC--CCCEEEEEEE
Confidence 5699999999999998863 689999999999876 79999999999999999999875 3578999999
Q ss_pred EccCCCCCCceeeEEEEEceecCC--CCceeEEEECCcCCcCcccceEEEEEEEee
Q 001764 606 DFDGPFNEATSLGHAEINFVKSDI--SDLADVWIPLQGKLAQACQSKLHLRIFLNN 659 (1016)
Q Consensus 606 D~d~~~~~dd~lG~~~i~l~~~~~--~~~~~~w~~L~~~~~~~~~g~l~l~~~~~~ 659 (1016)
|++. ++.+++||++.++|.++.. +...+.|++|. .+|+|+|++.+..
T Consensus 82 d~~~-~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~------~~G~l~l~~~~~~ 130 (132)
T cd04014 82 HDAA-IGPDDFVANCTISFEDLIQRGSGSFDLWVDLE------PQGKLHVKIELKG 130 (132)
T ss_pred eCCC-CCCCceEEEEEEEhHHhcccCCCcccEEEEcc------CCcEEEEEEEEec
Confidence 9998 7889999999999999876 56679999997 3589999999864
No 56
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.71 E-value=2.1e-16 Score=151.69 Aligned_cols=118 Identities=30% Similarity=0.502 Sum_probs=101.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeE-EEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCCCCCceeEE
Q 001764 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQR-FKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGF 81 (1016)
Q Consensus 3 L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~~k-~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~v~V~D~d~~~~d~~lG~ 81 (1016)
|.|+|++|++|++++.+|.+||||.+.+++.. .+|+++++++||+|||.|.|.+......|.|.|||++.++++++||+
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~ 81 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK 81 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence 88999999999999999999999999998764 79999999999999999999997666899999999999999999999
Q ss_pred EEeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEEE
Q 001764 82 LKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTIS 124 (1016)
Q Consensus 82 ~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~ 124 (1016)
+.+++..+... ......|++|.+.... ....|+|+|.++
T Consensus 82 ~~~~~~~~~~~--~~~~~~W~~L~~~~~~--~~~~G~i~l~~~ 120 (121)
T cd04054 82 VSLTREVISAH--PRGIDGWMNLTEVDPD--EEVQGEIHLELS 120 (121)
T ss_pred EEEcHHHhccC--CCCCCcEEECeeeCCC--CccccEEEEEEE
Confidence 99998887532 1235689999875422 356899999875
No 57
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.71 E-value=1.5e-16 Score=153.93 Aligned_cols=115 Identities=34% Similarity=0.598 Sum_probs=100.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCC--------
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKY-------- 73 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~~k~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~v~V~D~d~~-------- 73 (1016)
+|+|+|++|++|+..+..|.+||||++.+++..++|+++++++||.|||+|.|.+......|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~ 81 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQK 81 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccccee
Confidence 699999999999999999999999999999999999999999999999999999866667899999999852
Q ss_pred ---CCCceeEEEEeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEE
Q 001764 74 ---FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTI 123 (1016)
Q Consensus 74 ---~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l 123 (1016)
+.+++||++.+++.++.. ....||.|.++... ...+|+|+|++
T Consensus 82 ~~~~~~~~iG~~~i~l~~~~~-----~~~~w~~L~~~~~~--~~~~G~i~~~~ 127 (127)
T cd04027 82 FTRESDDFLGQTIIEVRTLSG-----EMDVWYNLEKRTDK--SAVSGAIRLHI 127 (127)
T ss_pred ccccCCCcceEEEEEhHHccC-----CCCeEEECccCCCC--CcEeEEEEEEC
Confidence 468999999999988732 24689999987643 45799999874
No 58
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.70 E-value=1.2e-16 Score=150.80 Aligned_cols=100 Identities=30% Similarity=0.465 Sum_probs=88.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCCCCCceeEE
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGF 81 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~~k~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~v~V~D~d~~~~d~~lG~ 81 (1016)
.|.|+|++||+|+.++ ..||||.|.+++++.+|+++++ .||.|||+|.|.+.+....|.|+|||++.+ +|+|||+
T Consensus 3 ~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~lG~ 77 (127)
T cd08394 3 LLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLVGT 77 (127)
T ss_pred eEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCceEE
Confidence 6999999999997654 4689999999999999999988 499999999999987777899999999975 8999999
Q ss_pred EEeecccccccCCCCCccEEEEccCC
Q 001764 82 LKIPVSRVFDADNKSLPTAWHSLQPK 107 (1016)
Q Consensus 82 ~~v~l~~l~~~~~~~~~~~w~~L~~~ 107 (1016)
+.|||.++...+ ..+..+||+|.+.
T Consensus 78 v~i~L~~v~~~~-~~~~~~Wy~L~~~ 102 (127)
T cd08394 78 VWIPLSTIRQSN-EEGPGEWLTLDSE 102 (127)
T ss_pred EEEEhHHcccCC-CCCCCccEecChH
Confidence 999999998753 4567899999965
No 59
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.70 E-value=8.5e-17 Score=154.32 Aligned_cols=99 Identities=31% Similarity=0.503 Sum_probs=87.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeeeccCCCCCeeccEEEEEE-e---CCCCEEEEEEEecCC
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKV-E---DLKDELVISVLDEDK 72 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~-----~~k~kTkvi~~t~nP~WnE~f~f~v-~---~~~~~L~v~V~D~d~ 72 (1016)
+|.|+|++|+||++.+ .+.+||||++.+. ..+++|+++++++||+|||+|.|.+ + .....|.|+|||++.
T Consensus 14 ~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~ 92 (122)
T cd08381 14 TLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDS 92 (122)
T ss_pred EEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCC
Confidence 5899999999999999 8999999999996 3478999999999999999999987 3 235799999999999
Q ss_pred CCCCceeEEEEeecccccccCCCCCccEEEEc
Q 001764 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSL 104 (1016)
Q Consensus 73 ~~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L 104 (1016)
++++++||++.|+|.++... .....||+|
T Consensus 93 ~~~~~~lG~~~i~l~~l~~~---~~~~~W~~L 121 (122)
T cd08381 93 LVENEFLGGVCIPLKKLDLS---QETEKWYPL 121 (122)
T ss_pred CcCCcEEEEEEEeccccccC---CCccceEEC
Confidence 99999999999999998643 235789987
No 60
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.70 E-value=9e-17 Score=152.44 Aligned_cols=102 Identities=26% Similarity=0.405 Sum_probs=87.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----C--eEEEeeeccCCCCCeeccEEEEEEeCC----CCEEEEEEEec
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG-----R--QRFKTKVVRKSLSPSWEEEFSFKVEDL----KDELVISVLDE 70 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~-----~--~k~kTkvi~~t~nP~WnE~f~f~v~~~----~~~L~v~V~D~ 70 (1016)
+|+|+|++|++|+..+ .|.+||||+|++. . ++++|+++.+++||+|||+|.|.+... ...|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 5899999999999987 4899999999982 2 357899999999999999999999532 35799999999
Q ss_pred CCCCCCceeEEEEeecccccccCCCCCccEEEEccCC
Q 001764 71 DKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPK 107 (1016)
Q Consensus 71 d~~~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~ 107 (1016)
+..+++++||++.+|+.++...+ ....|++|...
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~---~~~~w~~L~~~ 113 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAG---SCACWLPLGRR 113 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCC---cEEEEEECcCc
Confidence 98888999999999999997543 36789999764
No 61
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.70 E-value=3.6e-16 Score=151.05 Aligned_cols=118 Identities=25% Similarity=0.459 Sum_probs=98.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE-EEeeeccCCCCCeeccEEEEEEeCCC-CEEEEEEEecCCCCCCcee
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQR-FKTKVVRKSLSPSWEEEFSFKVEDLK-DELVISVLDEDKYFNDDFV 79 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~~k-~kTkvi~~t~nP~WnE~f~f~v~~~~-~~L~v~V~D~d~~~~d~~l 79 (1016)
.|+|+|++|+||++. +.+||||++.+++.+ .+|++ ++++||+|||+|.|.+.+.. ..|.|.|||++.++++++|
T Consensus 5 ~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~i 80 (126)
T cd08400 5 SLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEI 80 (126)
T ss_pred EEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCeE
Confidence 489999999999875 479999999998754 78887 46899999999999874433 6799999999999999999
Q ss_pred EEEEeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEEEEEe
Q 001764 80 GFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSH 127 (1016)
Q Consensus 80 G~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~ 127 (1016)
|++.+||..+..+ .....||+|.+... ......|+|+|+++|..
T Consensus 81 G~v~i~l~~l~~~---~~~~~W~~L~~~~~-~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 81 AEVTVQLSKLQNG---QETDEWYPLSSASP-LKGGEWGSLRIRARYSH 124 (126)
T ss_pred EEEEEEHhHccCC---CcccEeEEcccCCC-CCCCcCcEEEEEEEEEc
Confidence 9999999998653 33578999997643 22467899999999963
No 62
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.70 E-value=1.7e-16 Score=153.73 Aligned_cols=115 Identities=24% Similarity=0.461 Sum_probs=97.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCC-------
Q 001764 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGP------- 610 (1016)
Q Consensus 538 ~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~------- 610 (1016)
.|+|+|++|++|+.+|..|.+||||+|.+++...+|+++.+++||.|||+|.|.+.. ....|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~-~~~~l~i~v~d~d~~~~~~~~~ 80 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHN-SSDRIKVRVWDEDDDIKSRLKQ 80 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecC-CCCEEEEEEEECCCCcccccce
Confidence 489999999999999999999999999999888999999999999999999997743 357899999999851
Q ss_pred ---CCCCceeeEEEEEceecCCCCceeEEEECCcCCcC-cccceEEEEE
Q 001764 611 ---FNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQ-ACQSKLHLRI 655 (1016)
Q Consensus 611 ---~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~~~~~~-~~~g~l~l~~ 655 (1016)
.+.+++||++.+++.++. +..+.|++|..+++. ..+|+|.|++
T Consensus 81 ~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 81 KFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred eccccCCCcceEEEEEhHHcc--CCCCeEEECccCCCCCcEeEEEEEEC
Confidence 146899999999999875 345899999976543 3488888764
No 63
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.70 E-value=2.1e-16 Score=152.15 Aligned_cols=119 Identities=24% Similarity=0.432 Sum_probs=102.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-CeEEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCCCC--Cce
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG-RQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFN--DDF 78 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~-~~k~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~v~V~D~d~~~~--d~~ 78 (1016)
.|+|+|++|++|+..+.++.+||||++.++ .+.++|+++++++||+|||+|.|.+.. ...|.|+|||++.+++ ++|
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~ 79 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGF 79 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCce
Confidence 389999999999999999999999999996 678999999999999999999999965 6799999999998775 579
Q ss_pred eEEEEeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEE
Q 001764 79 VGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTI 123 (1016)
Q Consensus 79 lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l 123 (1016)
||++.+++.++..... ....||+|.+..........|+|.+.+
T Consensus 80 lG~~~i~l~~l~~~~~--~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 80 LGCVRIRANAVLPLKD--TGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred EeEEEEEHHHccccCC--CccceeEeecCCCCCCceEeeEEEEEe
Confidence 9999999999975332 246699998766544456789999876
No 64
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.70 E-value=2.3e-16 Score=154.51 Aligned_cols=118 Identities=22% Similarity=0.390 Sum_probs=99.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeecCCCCCCCeeeEEEEEEeeCC---------CCCeEEEEEEEcc
Q 001764 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDE---------PPSMLDVEVYDFD 608 (1016)
Q Consensus 538 ~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~~~~~---------~~~~L~i~V~D~d 608 (1016)
.|+|+|++|++|+.+|..|.+||||++.+++.+++|+++++++||.|||.|.|.+... ....|.|+|||+|
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 5899999999999999999999999999999999999999999999999999975321 1257999999999
Q ss_pred CCCCCCceeeEEEE-EceecCC---CCceeEEEECCcCCcCcccceEEEEEEEe
Q 001764 609 GPFNEATSLGHAEI-NFVKSDI---SDLADVWIPLQGKLAQACQSKLHLRIFLN 658 (1016)
Q Consensus 609 ~~~~~dd~lG~~~i-~l~~~~~---~~~~~~w~~L~~~~~~~~~g~l~l~~~~~ 658 (1016)
. .++|++||++.+ ++..+.. .....+|++|.... ...|+|.|.+++.
T Consensus 82 ~-~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~--~~~Geil~~~~~~ 132 (135)
T cd04017 82 S-VGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGG--QSAGELLAAFELI 132 (135)
T ss_pred C-CCCCccceEEEeeeeeecccCCCCCCCceEEEeecCC--CchhheeEEeEEE
Confidence 9 889999999997 4444432 35678999997543 3689999999875
No 65
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.69 E-value=2.8e-16 Score=152.30 Aligned_cols=117 Identities=21% Similarity=0.365 Sum_probs=103.7
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCeeeeeecCCCCCCCeeeEEEEEEeeC--CCCCeEEEEEEEccCCCCCCceeeEE
Q 001764 543 LIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMD--EPPSMLDVEVYDFDGPFNEATSLGHA 620 (1016)
Q Consensus 543 v~~A~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~~~~--~~~~~L~i~V~D~d~~~~~dd~lG~~ 620 (1016)
|++|+||+. ..|.+||||+|.+++.+++|++++++.||+|||+|.|.+.. ...+.|.|+|||++. .++|++||++
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~-~~~d~~iG~~ 78 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEK-VGRNRLIGSA 78 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCC-CCCCceEEEE
Confidence 789999998 78899999999999999999999999999999999998854 346789999999998 8889999999
Q ss_pred EEEceecCCCCceeEEEECCcCCcCcccceEEEEEEEeecCC
Q 001764 621 EINFVKSDISDLADVWIPLQGKLAQACQSKLHLRIFLNNTKG 662 (1016)
Q Consensus 621 ~i~l~~~~~~~~~~~w~~L~~~~~~~~~g~l~l~~~~~~~~~ 662 (1016)
.+++.++..++....|++|....+....|.|++++.|....+
T Consensus 79 ~~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 79 TVSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPPDG 120 (127)
T ss_pred EEEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCCCC
Confidence 999999988888899999986555555789999999876554
No 66
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.69 E-value=4.8e-16 Score=155.87 Aligned_cols=119 Identities=29% Similarity=0.481 Sum_probs=101.4
Q ss_pred EEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEECCeE-EEeeeccCCCCCeecc
Q 001764 2 KLVVRVIEARNIPAMD------------------------------QNGYSDPYVRLQLGRQR-FKTKVVRKSLSPSWEE 50 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d------------------------------~~g~~dPyv~v~~~~~k-~kTkvi~~t~nP~WnE 50 (1016)
+|+|+|++|++|+.+| ..|.+||||.+.+++.+ .+|++++++.||+|||
T Consensus 8 ~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~WnE 87 (158)
T cd04015 8 TLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWNE 87 (158)
T ss_pred eeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccce
Confidence 5899999999999987 34678999999999765 6999999999999999
Q ss_pred EEEEEEeCCCCEEEEEEEecCCCCCCceeEEEEeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEEEE
Q 001764 51 EFSFKVEDLKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (1016)
Q Consensus 51 ~f~f~v~~~~~~L~v~V~D~d~~~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~ 125 (1016)
+|.|.+......|.|.|||++.++ +++||++.+|+.++..+ .....||+|.+..++. .+..|+|+|++.|
T Consensus 88 ~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g---~~~~~w~~L~~~~~~~-~~~~~~l~v~~~f 157 (158)
T cd04015 88 SFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSG---EPVEGWLPILDSNGKP-PKPGAKIRVSLQF 157 (158)
T ss_pred EEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCC---CCcceEEECcCCCCCC-CCCCCEEEEEEEE
Confidence 999999777779999999999875 68999999999998643 3467899998765443 2457899999987
No 67
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.69 E-value=4.7e-16 Score=150.35 Aligned_cols=118 Identities=20% Similarity=0.335 Sum_probs=100.4
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCCCCc
Q 001764 536 GWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEAT 615 (1016)
Q Consensus 536 ~~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~~dd 615 (1016)
.++|+|+|++|++|+..|..|.+||||++.++++.++|++++++.||.|||.|.|.+. .....|.|+|||++. + .|+
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~-~~~~~l~i~V~d~~~-~-~d~ 78 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRK-KPRSPIKIQVWNSNL-L-CDE 78 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEec-CCCCEEEEEEEECCC-C-CCC
Confidence 3579999999999999999999999999999999999999999999999999999664 347789999999998 5 589
Q ss_pred eeeEEEEEceecCCCCceeEEEECCc---CCcCcccceEEEEEEEe
Q 001764 616 SLGHAEINFVKSDISDLADVWIPLQG---KLAQACQSKLHLRIFLN 658 (1016)
Q Consensus 616 ~lG~~~i~l~~~~~~~~~~~w~~L~~---~~~~~~~g~l~l~~~~~ 658 (1016)
+||.+.+++.++. .....|++|.. +......|.|.|++.+.
T Consensus 79 ~lG~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~ 122 (126)
T cd04046 79 FLGQATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISVKVTSS 122 (126)
T ss_pred ceEEEEEecccCC--CcCceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence 9999999998754 34578889963 23344588999888763
No 68
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.69 E-value=1e-16 Score=151.14 Aligned_cols=101 Identities=21% Similarity=0.464 Sum_probs=90.1
Q ss_pred EEEEEEEeecCCCCCC-CCCCCcEEEEEECCeeeeeecCCCCCCCee-eEEEEEEeeCC--CCCeEEEEEEEccCCCCCC
Q 001764 539 LTVALIKGDNLAAVDS-SGFCDPYVVFTCNGKSRTSSIKFQQCDPMW-NEIFEYDAMDE--PPSMLDVEVYDFDGPFNEA 614 (1016)
Q Consensus 539 L~V~v~~A~~L~~~d~-~g~sDPyv~v~~~~~~~~T~~~~~t~nP~W-nE~f~f~~~~~--~~~~L~i~V~D~d~~~~~d 614 (1016)
|.|+|++|+||+.++. .|.+||||++.++++.++|+++++++||.| ||+|.|.+... ..+.|.|+|||+|. ++++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~-~~~~ 79 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT-YSAN 79 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC-CCCC
Confidence 5899999999999984 789999999999998899999999999999 99999987543 24689999999999 8899
Q ss_pred ceeeEEEEEceecCC---CCceeEEEECC
Q 001764 615 TSLGHAEINFVKSDI---SDLADVWIPLQ 640 (1016)
Q Consensus 615 d~lG~~~i~l~~~~~---~~~~~~w~~L~ 640 (1016)
++||++.+++.++.. +...+.||+|.
T Consensus 80 ~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 80 DAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred CceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 999999999999876 34568999995
No 69
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.69 E-value=1.3e-16 Score=149.16 Aligned_cols=97 Identities=23% Similarity=0.388 Sum_probs=81.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eEEEeeeccCCCCCeeccEEEEEEeC---CCCEEEEEEEecCCCC
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR----QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKYF 74 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~----~k~kTkvi~~t~nP~WnE~f~f~v~~---~~~~L~v~V~D~d~~~ 74 (1016)
+|.|+|++|++|+ ..|.+||||++.+.. .+++|++.++|+||+|||+|.|.++. .+..|.++|||+|+++
T Consensus 15 ~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drfs 91 (118)
T cd08677 15 ELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDRFS 91 (118)
T ss_pred EEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCCCC
Confidence 6999999999998 346799999999963 57899999999999999999999943 3578999999999999
Q ss_pred CCceeEEEEeecccccccCCCCCccEEEEc
Q 001764 75 NDDFVGFLKIPVSRVFDADNKSLPTAWHSL 104 (1016)
Q Consensus 75 ~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L 104 (1016)
++++||++.+++.++... .....|..|
T Consensus 92 ~~d~IG~v~l~l~~~~~~---~~~~~W~~~ 118 (118)
T cd08677 92 RHSTLGELRLKLADVSMM---LGAAQWVDL 118 (118)
T ss_pred CCceEEEEEEccccccCC---ccccchhcC
Confidence 999999999999987322 124567654
No 70
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.69 E-value=1.4e-16 Score=153.88 Aligned_cols=104 Identities=25% Similarity=0.352 Sum_probs=90.6
Q ss_pred EEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CeEEEeeeccCCCCCeeccEEEEEEeCC---CCEEEEEEEecCC
Q 001764 2 KLVVRVIEARNIPAMDQN-GYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDEDK 72 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~-g~~dPyv~v~~~-----~~k~kTkvi~~t~nP~WnE~f~f~v~~~---~~~L~v~V~D~d~ 72 (1016)
+|.|+|++|+||++++.. |.+||||++.+. ..++||+++++++||+|||+|.|.+... ...|.+.|||++.
T Consensus 16 ~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~ 95 (128)
T cd08392 16 CLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRT 95 (128)
T ss_pred EEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCC
Confidence 689999999999999875 899999999995 2368999999999999999999998542 5799999999999
Q ss_pred CCCCceeEEEEeecccccccCCCCCccEEEEcc
Q 001764 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105 (1016)
Q Consensus 73 ~~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~ 105 (1016)
++++++||++.|+|.++...+.......||+|.
T Consensus 96 ~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 96 LKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred CcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 999999999999999996544445678999983
No 71
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.69 E-value=2.2e-16 Score=154.77 Aligned_cols=104 Identities=28% Similarity=0.430 Sum_probs=90.2
Q ss_pred EEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEE-ecCCCC
Q 001764 2 KLVVRVIEARNIPAMD-QNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVL-DEDKYF 74 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d-~~g~~dPyv~v~~~~-----~k~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~v~V~-D~d~~~ 74 (1016)
+|.|+|++|+||++.+ ..|.+||||++++.. .++||+++++++||+|||+|.|.+...+..|.|+|| |++.+.
T Consensus 30 ~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~~~ 109 (146)
T cd04028 30 QLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGRMD 109 (146)
T ss_pred EEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCCCC
Confidence 6899999999999875 578899999999943 378999999999999999999999877789999999 688888
Q ss_pred CCceeEEEEeecccccccCCCCCccEEEEccCCC
Q 001764 75 NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (1016)
Q Consensus 75 ~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~ 108 (1016)
+++|||++.|+|+++... .....||.|.+..
T Consensus 110 ~~~~iG~~~i~L~~l~~~---~~~~~Wy~L~~~~ 140 (146)
T cd04028 110 KKVFMGVAQILLDDLDLS---NLVIGWYKLFPTS 140 (146)
T ss_pred CCceEEEEEEEcccccCC---CCceeEEecCCcc
Confidence 999999999999998432 2357899999764
No 72
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.69 E-value=3e-16 Score=150.26 Aligned_cols=113 Identities=32% Similarity=0.490 Sum_probs=97.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEeeeccCCCCCeeccEEEEEEeC-CCCEEEEEEEecCCCCCCce
Q 001764 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLG---RQRFKTKVVRKSLSPSWEEEFSFKVED-LKDELVISVLDEDKYFNDDF 78 (1016)
Q Consensus 3 L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~---~~k~kTkvi~~t~nP~WnE~f~f~v~~-~~~~L~v~V~D~d~~~~d~~ 78 (1016)
|.|+|++|++|+..+..+.+||||++.++ ..+.+|++++++.||+|||+|.|.+.. ....|.|+|||++.+ ++++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 78999999999999988999999999986 357899999999999999999999954 356799999999998 8999
Q ss_pred eEEEEeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEEEEE
Q 001764 79 VGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (1016)
Q Consensus 79 lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~ 126 (1016)
||++.+++.++..+ .....|++|.+. ..|+|.+++.+.
T Consensus 81 iG~~~~~l~~l~~g---~~~~~~~~L~~~-------~~g~l~~~~~~~ 118 (119)
T cd04036 81 LGTVLFDVSKLKLG---EKVRVTFSLNPQ-------GKEELEVEFLLE 118 (119)
T ss_pred cEEEEEEHHHCCCC---CcEEEEEECCCC-------CCceEEEEEEee
Confidence 99999999998643 346789999863 369999988764
No 73
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.68 E-value=1.7e-16 Score=152.86 Aligned_cols=105 Identities=27% Similarity=0.386 Sum_probs=91.5
Q ss_pred CCeEEEEEEEEeecCCCCCC-CCCCCcEEEEEEC-----CeeeeeecCCCCCCCeeeEEEEEEeeCC--CCCeEEEEEEE
Q 001764 535 DGWLLTVALIKGDNLAAVDS-SGFCDPYVVFTCN-----GKSRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYD 606 (1016)
Q Consensus 535 ~~~~L~V~v~~A~~L~~~d~-~g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~WnE~f~f~~~~~--~~~~L~i~V~D 606 (1016)
..+.|.|+|++|+||+..+. .|.+||||++.+. ..+++|+++++++||+|||+|.|.+..+ ....|.|+|||
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d 92 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWH 92 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence 45569999999999998875 5899999999984 2247999999999999999999987432 34579999999
Q ss_pred ccCCCCCCceeeEEEEEceecCCCCceeEEEECC
Q 001764 607 FDGPFNEATSLGHAEINFVKSDISDLADVWIPLQ 640 (1016)
Q Consensus 607 ~d~~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~ 640 (1016)
+|. ++++++||++.|++.++......+.|++|.
T Consensus 93 ~~~-~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 93 YDR-FGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred CCC-CCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 998 899999999999999998888889999984
No 74
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.68 E-value=2.2e-16 Score=148.80 Aligned_cols=104 Identities=37% Similarity=0.684 Sum_probs=92.5
Q ss_pred EEEEEEEeecCCCCCC-CCCCCcEEEEEECCeEEEeeeccCCCCCee-ccEEEEEEeCC---CCEEEEEEEecCCCCCCc
Q 001764 3 LVVRVIEARNIPAMDQ-NGYSDPYVRLQLGRQRFKTKVVRKSLSPSW-EEEFSFKVEDL---KDELVISVLDEDKYFNDD 77 (1016)
Q Consensus 3 L~V~V~~Ar~L~~~d~-~g~~dPyv~v~~~~~k~kTkvi~~t~nP~W-nE~f~f~v~~~---~~~L~v~V~D~d~~~~d~ 77 (1016)
|.|+|++|+||+.++. .|.+||||++.+++++++|+++++++||+| ||+|.|.+... ...|.|+|||++.+++++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 6899999999999885 688999999999999999999999999999 99999999542 478999999999999999
Q ss_pred eeEEEEeecccccccCCCCCccEEEEccC
Q 001764 78 FVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (1016)
Q Consensus 78 ~lG~~~v~l~~l~~~~~~~~~~~w~~L~~ 106 (1016)
+||++.+++.++...++......||+|.+
T Consensus 81 ~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 81 AIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred ceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 99999999999986433445788999975
No 75
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.68 E-value=1.6e-16 Score=153.35 Aligned_cols=104 Identities=31% Similarity=0.477 Sum_probs=90.9
Q ss_pred CeEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC-----eeeeeecCCCCCCCeeeEEEEEEeeCC--CCCeEEEEEEEc
Q 001764 536 GWLLTVALIKGDNLAAVDSS-GFCDPYVVFTCNG-----KSRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDF 607 (1016)
Q Consensus 536 ~~~L~V~v~~A~~L~~~d~~-g~sDPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~~~~~--~~~~L~i~V~D~ 607 (1016)
.+.|.|+|++|+||+++|.. |.+||||++.+.. .+++|+++++++||+|||+|.|.+... ....|.|+|||+
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~ 93 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHR 93 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeC
Confidence 34699999999999999986 8999999999842 237999999999999999999987432 346899999999
Q ss_pred cCCCCCCceeeEEEEEceecCCCCceeEEEECC
Q 001764 608 DGPFNEATSLGHAEINFVKSDISDLADVWIPLQ 640 (1016)
Q Consensus 608 d~~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~ 640 (1016)
|. ++++++||++.|+|.++........||+|.
T Consensus 94 ~~-~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 94 DS-LGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred CC-CCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 98 899999999999999998777789999984
No 76
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.68 E-value=3.1e-16 Score=146.54 Aligned_cols=101 Identities=30% Similarity=0.489 Sum_probs=90.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeC-CCCEEEEEEEecCCCCCCceeEE
Q 001764 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVED-LKDELVISVLDEDKYFNDDFVGF 81 (1016)
Q Consensus 3 L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~~k~kTkvi~~t~nP~WnE~f~f~v~~-~~~~L~v~V~D~d~~~~d~~lG~ 81 (1016)
|.|+|++|++|+..+..+.+||||++++++++++|++++++.||+|||+|.|.+.+ ....|.|+|||++. +++||+
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG~ 78 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLGS 78 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccEE
Confidence 88999999999999988999999999999999999999999999999999999965 45789999999986 789999
Q ss_pred EEeecccccccCCCCCccEEEEccCC
Q 001764 82 LKIPVSRVFDADNKSLPTAWHSLQPK 107 (1016)
Q Consensus 82 ~~v~l~~l~~~~~~~~~~~w~~L~~~ 107 (1016)
+.++|.++...+ +.....||+|.++
T Consensus 79 ~~i~l~~l~~~~-~~~~~~w~~L~~~ 103 (105)
T cd04050 79 LTLPLSELLKEP-DLTLDQPFPLDNS 103 (105)
T ss_pred EEEEHHHhhccc-cceeeeeEecCCC
Confidence 999999997644 3346899999864
No 77
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.67 E-value=3.4e-16 Score=151.08 Aligned_cols=105 Identities=27% Similarity=0.490 Sum_probs=92.6
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeecCCCCCCCeeeEEEEEEeeCC--CCCeEEEEEEEccC
Q 001764 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNG---KSRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDFDG 609 (1016)
Q Consensus 535 ~~~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~---~~~~T~~~~~t~nP~WnE~f~f~~~~~--~~~~L~i~V~D~d~ 609 (1016)
..+.|+|+|++|+||+.++..|.+||||++.+.+ +.++|++++++.||.|||+|.|.+... ....|.|+|||+|.
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~ 93 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDR 93 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCC
Confidence 3456999999999999999999999999999853 347999999999999999999987432 24689999999998
Q ss_pred CCCCCceeeEEEEEceecCCCCceeEEEECC
Q 001764 610 PFNEATSLGHAEINFVKSDISDLADVWIPLQ 640 (1016)
Q Consensus 610 ~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~ 640 (1016)
++++++||++.++++++..+...+.|++|+
T Consensus 94 -~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 94 -FSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred -CCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 889999999999999988888889999986
No 78
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.67 E-value=1.8e-16 Score=149.76 Aligned_cols=100 Identities=22% Similarity=0.375 Sum_probs=87.7
Q ss_pred eEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC---eeeeeecCCCCCCCeeeEEEEEEeeCC---CCCeEEEEEEEccC
Q 001764 537 WLLTVALIKGDNLAAVDSS-GFCDPYVVFTCNG---KSRTSSIKFQQCDPMWNEIFEYDAMDE---PPSMLDVEVYDFDG 609 (1016)
Q Consensus 537 ~~L~V~v~~A~~L~~~d~~-g~sDPyv~v~~~~---~~~~T~~~~~t~nP~WnE~f~f~~~~~---~~~~L~i~V~D~d~ 609 (1016)
|+|+|+|++|+||+.+|.. |.+||||+|.+.+ ..++|+++++++||.|||.|.|.+... ....|.|+|||+|.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 4699999999999999988 9999999999853 348999999999999999999977543 45689999999999
Q ss_pred CCCCCceeeEEEEEceecCCCCceeEEEECC
Q 001764 610 PFNEATSLGHAEINFVKSDISDLADVWIPLQ 640 (1016)
Q Consensus 610 ~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~ 640 (1016)
+++|++||++.+++.++.. ...|+++.
T Consensus 81 -~~~dd~lG~~~i~l~~l~~---~~~~~~~~ 107 (111)
T cd04041 81 -FTADDRLGRVEIDLKELIE---DRNWMGRR 107 (111)
T ss_pred -CCCCCcceEEEEEHHHHhc---CCCCCccc
Confidence 8899999999999999873 36788885
No 79
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.67 E-value=3.3e-16 Score=151.13 Aligned_cols=105 Identities=31% Similarity=0.559 Sum_probs=93.1
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeeeecCCCCCCCeeeEEEEEEeeCC--CCCeEEEEEEEccC
Q 001764 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN---GKSRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDFDG 609 (1016)
Q Consensus 535 ~~~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~---~~~~~T~~~~~t~nP~WnE~f~f~~~~~--~~~~L~i~V~D~d~ 609 (1016)
..+.|.|+|++|+||+.++..|.+||||++.+. ...++|++++++.||.|||+|.|.+... ....|.|+|||+|.
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~ 93 (124)
T cd08387 14 DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQ 93 (124)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCC
Confidence 446799999999999999999999999999984 3348999999999999999999987432 34689999999998
Q ss_pred CCCCCceeeEEEEEceecCCCCceeEEEECC
Q 001764 610 PFNEATSLGHAEINFVKSDISDLADVWIPLQ 640 (1016)
Q Consensus 610 ~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~ 640 (1016)
++++++||++.+++.++..++..+.|++|.
T Consensus 94 -~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 94 -FSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred -CCCCceeEEEEEecccccCCCCcceEEECc
Confidence 889999999999999998778889999985
No 80
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.67 E-value=3e-16 Score=146.90 Aligned_cols=94 Identities=14% Similarity=0.201 Sum_probs=82.7
Q ss_pred eEEEEEEEEeecCCCCCCC----CCCCcEEEEEECCeeeeeecCCCCCCCeeeEEEEEEeeC-CCCCeEEEEEEEccCCC
Q 001764 537 WLLTVALIKGDNLAAVDSS----GFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMD-EPPSMLDVEVYDFDGPF 611 (1016)
Q Consensus 537 ~~L~V~v~~A~~L~~~d~~----g~sDPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~~~~-~~~~~L~i~V~D~d~~~ 611 (1016)
|+|.|+|++|+||+..+.. +.+||||+|.++++.++|+++++++||+|||.|.|.+.. .....|.|+|||+|. +
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~-~ 79 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDK-F 79 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCC-C
Confidence 4799999999999998742 358999999999888999999999999999999998754 334579999999999 8
Q ss_pred CCCceeeEEEEEceecCCCC
Q 001764 612 NEATSLGHAEINFVKSDISD 631 (1016)
Q Consensus 612 ~~dd~lG~~~i~l~~~~~~~ 631 (1016)
++|++||++.++|.++..+.
T Consensus 80 ~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 80 SFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCCcceEEEEEEHHHHHhhC
Confidence 99999999999999976543
No 81
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.67 E-value=3.4e-16 Score=154.62 Aligned_cols=103 Identities=22% Similarity=0.417 Sum_probs=88.9
Q ss_pred EEEEEEEeecCCCCCCCC--------------CCCcEEEEEECCeeeeeecCCCCCCCeeeEEEEEEee-CCCCCeEEEE
Q 001764 539 LTVALIKGDNLAAVDSSG--------------FCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAM-DEPPSMLDVE 603 (1016)
Q Consensus 539 L~V~v~~A~~L~~~d~~g--------------~sDPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~~~-~~~~~~L~i~ 603 (1016)
|.|+|++|++|+.+|..+ .+||||+|.+++++.+|+++++++||+|||+|.|.+. +...+.|.|+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 799999999999998554 7899999999999999999999999999999999874 4456799999
Q ss_pred EEEccCCCCCCceeeEEEEEceecCCCCc-------eeEEEECCcC
Q 001764 604 VYDFDGPFNEATSLGHAEINFVKSDISDL-------ADVWIPLQGK 642 (1016)
Q Consensus 604 V~D~d~~~~~dd~lG~~~i~l~~~~~~~~-------~~~w~~L~~~ 642 (1016)
|||+|. .++||+||++.+++.++...+. ...|+.|.+.
T Consensus 82 v~D~d~-~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~ 126 (151)
T cd04018 82 IRDWDR-VGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGS 126 (151)
T ss_pred EEECCC-CCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecC
Confidence 999999 8899999999999999765442 3567777553
No 82
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.67 E-value=4.3e-16 Score=149.96 Aligned_cols=114 Identities=22% Similarity=0.368 Sum_probs=95.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC-CeeeeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCCC--Cc
Q 001764 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCN-GKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNE--AT 615 (1016)
Q Consensus 539 L~V~v~~A~~L~~~d~~g~sDPyv~v~~~-~~~~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~~--dd 615 (1016)
|+|+|++|+||+.++..|.+||||++.++ .+.++|+++++++||.|||.|.|.+.. .+.|.|+|||++. +++ |+
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~-~~~~~d~ 78 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKK-FKKKDQG 78 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCC-CCCCCCc
Confidence 89999999999999999999999999997 556999999999999999999998744 6799999999998 664 57
Q ss_pred eeeEEEEEceecCCC-CceeEEEECCcCCc---CcccceEEEEE
Q 001764 616 SLGHAEINFVKSDIS-DLADVWIPLQGKLA---QACQSKLHLRI 655 (1016)
Q Consensus 616 ~lG~~~i~l~~~~~~-~~~~~w~~L~~~~~---~~~~g~l~l~~ 655 (1016)
+||++.+++.++... .....|++|..... ....|+|.+++
T Consensus 79 ~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 79 FLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred eEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 999999999997644 34588999965332 22367776654
No 83
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.67 E-value=3.9e-16 Score=150.59 Aligned_cols=101 Identities=32% Similarity=0.472 Sum_probs=87.8
Q ss_pred EEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CeEEEeeeccCCCCCeeccEEEEEEeC---CCCEEEEEEEecCC
Q 001764 2 KLVVRVIEARNIPAMDQN-GYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDK 72 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~-g~~dPyv~v~~~-----~~k~kTkvi~~t~nP~WnE~f~f~v~~---~~~~L~v~V~D~d~ 72 (1016)
+|.|+|++|+||++++.. |.+||||++.+. ..+++|+++++++||+|||+|.|.+.. ....|.|+|||++.
T Consensus 16 ~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~ 95 (125)
T cd08393 16 ELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDS 95 (125)
T ss_pred EEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCC
Confidence 699999999999999975 899999999994 235899999999999999999999843 34689999999999
Q ss_pred CCCCceeEEEEeecccccccCCCCCccEEEEcc
Q 001764 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105 (1016)
Q Consensus 73 ~~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~ 105 (1016)
++++++||++.++|.++... .....||+|+
T Consensus 96 ~~~~~~iG~~~i~L~~~~~~---~~~~~W~~L~ 125 (125)
T cd08393 96 LGRNSFLGEVEVDLGSWDWS---NTQPTWYPLQ 125 (125)
T ss_pred CCCCcEeEEEEEecCccccC---CCCcceEECc
Confidence 99999999999999998543 2357799985
No 84
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.66 E-value=5.2e-16 Score=149.86 Aligned_cols=104 Identities=24% Similarity=0.377 Sum_probs=89.2
Q ss_pred CeEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC-----eeeeeecCCCCCCCeeeEEEEEEeeCC--CCCeEEEEEEEc
Q 001764 536 GWLLTVALIKGDNLAAVDSS-GFCDPYVVFTCNG-----KSRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDF 607 (1016)
Q Consensus 536 ~~~L~V~v~~A~~L~~~d~~-g~sDPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~~~~~--~~~~L~i~V~D~ 607 (1016)
...|.|+|++|+||++++.. |.+||||++.+.. .+++|+++++++||+|||+|.|.+... ....|.|.|||+
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~ 93 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHS 93 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeC
Confidence 45699999999999999975 9999999999842 247999999999999999999987442 346899999999
Q ss_pred cCCCCCCceeeEEEEEceecCCC---CceeEEEECC
Q 001764 608 DGPFNEATSLGHAEINFVKSDIS---DLADVWIPLQ 640 (1016)
Q Consensus 608 d~~~~~dd~lG~~~i~l~~~~~~---~~~~~w~~L~ 640 (1016)
+. ++++++||++.|+|.++... .....||+|.
T Consensus 94 ~~-~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 94 RT-LKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred CC-CcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 98 88999999999999997653 3568899984
No 85
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.66 E-value=8.7e-16 Score=146.11 Aligned_cols=113 Identities=31% Similarity=0.506 Sum_probs=99.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCee-eeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCCCCcee
Q 001764 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSL 617 (1016)
Q Consensus 539 L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~~-~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~~dd~l 617 (1016)
|+|+|++|++|+..+..|.+||||++.+++.. ++|+++.++.||.|||+|.|.+.....+.|.|+|||++. .+++++|
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~-~~~~~~i 79 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDR-GGKDDLL 79 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCC-CCCCCce
Confidence 57999999999999999999999999997655 899999999999999999998866567889999999998 7889999
Q ss_pred eEEEEEceecCCCCceeEEEECCcCCcCcccceEEE
Q 001764 618 GHAEINFVKSDISDLADVWIPLQGKLAQACQSKLHL 653 (1016)
Q Consensus 618 G~~~i~l~~~~~~~~~~~w~~L~~~~~~~~~g~l~l 653 (1016)
|++.+++.++..+...+.|++|.++++ ...|.|.|
T Consensus 80 G~~~~~l~~l~~~~~~~~~~~L~~~g~-~~~~~~~~ 114 (115)
T cd04040 80 GSAYIDLSDLEPEETTELTLPLDGQGG-GKLGAVFL 114 (115)
T ss_pred EEEEEEHHHcCCCCcEEEEEECcCCCC-ccCceEEc
Confidence 999999999988888899999987643 34566553
No 86
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.66 E-value=6.2e-16 Score=149.45 Aligned_cols=103 Identities=27% Similarity=0.460 Sum_probs=88.7
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeecCCCCCCCeeeEEEEEEeeCC---CCCeEEEEEEEc
Q 001764 536 GWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNG-----KSRTSSIKFQQCDPMWNEIFEYDAMDE---PPSMLDVEVYDF 607 (1016)
Q Consensus 536 ~~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~~~~~---~~~~L~i~V~D~ 607 (1016)
.+.|.|+|++|+||+.++..+.+||||++.+.+ ..++|++++++.||+|||+|.|.+... ....|.|+|||+
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~ 94 (125)
T cd04031 15 TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDY 94 (125)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeC
Confidence 456999999999999999999999999999864 458999999999999999999975332 356899999999
Q ss_pred cCCCCCCceeeEEEEEceecCCCCceeEEEECC
Q 001764 608 DGPFNEATSLGHAEINFVKSDISDLADVWIPLQ 640 (1016)
Q Consensus 608 d~~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~ 640 (1016)
|. ++++++||++.++|.+.. ......||+|+
T Consensus 95 ~~-~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~ 125 (125)
T cd04031 95 DR-DGENDFLGEVVIDLADAL-LDDEPHWYPLQ 125 (125)
T ss_pred CC-CCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence 98 889999999999999833 34457899985
No 87
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.66 E-value=4e-16 Score=148.79 Aligned_cols=102 Identities=20% Similarity=0.315 Sum_probs=87.7
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeecCCCCCCCeeeEEEEEEeeC-CCCCeEEEEEEEccC
Q 001764 536 GWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNG-----KSRTSSIKFQQCDPMWNEIFEYDAMD-EPPSMLDVEVYDFDG 609 (1016)
Q Consensus 536 ~~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~~~~-~~~~~L~i~V~D~d~ 609 (1016)
.+.|.|+|++|+||++++ .|.+||||++.+.. .+++|++++++.||.|||+|.|.+.. .....|.|.|||+|.
T Consensus 11 ~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~ 89 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLS 89 (119)
T ss_pred CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCC
Confidence 356999999999999999 88999999999863 24789999999999999999998743 234578999999997
Q ss_pred CCC-CCceeeEEEEEceecCCCCceeEEEEC
Q 001764 610 PFN-EATSLGHAEINFVKSDISDLADVWIPL 639 (1016)
Q Consensus 610 ~~~-~dd~lG~~~i~l~~~~~~~~~~~w~~L 639 (1016)
.. ++++||.+.|++.++..+...+.||.|
T Consensus 90 -~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 90 -KSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred -CcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 54 478999999999998877777999987
No 88
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.66 E-value=1.3e-15 Score=146.26 Aligned_cols=113 Identities=36% Similarity=0.662 Sum_probs=98.2
Q ss_pred EEEEEEEEeecCCCCCC------CCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeC-CCCEEEEEEEecCCCC
Q 001764 2 KLVVRVIEARNIPAMDQ------NGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVED-LKDELVISVLDEDKYF 74 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~------~g~~dPyv~v~~~~~k~kTkvi~~t~nP~WnE~f~f~v~~-~~~~L~v~V~D~d~~~ 74 (1016)
.|+|+|++|+||+..+. .|.+||||++.++++..+|++++++.||+|||+|.|.+.+ ....|.|+|||++..
T Consensus 2 ~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~- 80 (121)
T cd08391 2 VLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD- 80 (121)
T ss_pred eEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC-
Confidence 48999999999998875 3689999999999999999999999999999999999954 567999999999987
Q ss_pred CCceeEEEEeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEEEE
Q 001764 75 NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (1016)
Q Consensus 75 ~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~ 125 (1016)
++++||++.+++.++... .....||+|.+. ..|+|+|.+.+
T Consensus 81 ~~~~iG~~~i~l~~l~~~---~~~~~w~~L~~~-------~~G~~~~~~~~ 121 (121)
T cd08391 81 KDDFLGRLSIDLGSVEKK---GFIDEWLPLEDV-------KSGRLHLKLEW 121 (121)
T ss_pred CCCcEEEEEEEHHHhccc---CccceEEECcCC-------CCceEEEEEeC
Confidence 899999999999998643 235789999853 46999998753
No 89
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.65 E-value=9.1e-16 Score=151.57 Aligned_cols=107 Identities=26% Similarity=0.499 Sum_probs=92.6
Q ss_pred EEEEEEEEeecCCCCCCCC--------------CCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEe--CCCCEEEE
Q 001764 2 KLVVRVIEARNIPAMDQNG--------------YSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVE--DLKDELVI 65 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g--------------~~dPyv~v~~~~~k~kTkvi~~t~nP~WnE~f~f~v~--~~~~~L~v 65 (1016)
+|.|+|++|++|+++|..+ .+||||+|.+++++.+|+++++++||+|||+|.|.+. .....|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 4899999999999988553 6899999999999999999999999999999999973 44679999
Q ss_pred EEEecCCCCCCceeEEEEeecccccccCCC----CCccEEEEccCCC
Q 001764 66 SVLDEDKYFNDDFVGFLKIPVSRVFDADNK----SLPTAWHSLQPKN 108 (1016)
Q Consensus 66 ~V~D~d~~~~d~~lG~~~v~l~~l~~~~~~----~~~~~w~~L~~~~ 108 (1016)
+|||+|.+++|++||++.+++.++...+.. ...+.|+.|+...
T Consensus 81 ~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~ 127 (151)
T cd04018 81 QIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSP 127 (151)
T ss_pred EEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCc
Confidence 999999999999999999999998754321 2467999998654
No 90
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.65 E-value=1.1e-15 Score=144.28 Aligned_cols=98 Identities=20% Similarity=0.234 Sum_probs=84.3
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCCCCce
Q 001764 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATS 616 (1016)
Q Consensus 537 ~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~~dd~ 616 (1016)
+.|.|+|++|++|+.++ ..||||+|++++++.+|++.++ .||.|||.|.|.+.. ....|.|+|||+|. + .||+
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~-~~~~L~v~V~dkd~-~-~DD~ 74 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINR-LDLGLVIELWNKGL-I-WDTL 74 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcC-CCCEEEEEEEeCCC-c-CCCc
Confidence 35999999999998755 4589999999999999999988 599999999997744 45669999999997 4 8999
Q ss_pred eeEEEEEceecCCCCce--eEEEECCc
Q 001764 617 LGHAEINFVKSDISDLA--DVWIPLQG 641 (1016)
Q Consensus 617 lG~~~i~l~~~~~~~~~--~~w~~L~~ 641 (1016)
||++.|+|.++..+... .+||+|++
T Consensus 75 lG~v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 75 VGTVWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred eEEEEEEhHHcccCCCCCCCccEecCh
Confidence 99999999997754444 89999985
No 91
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.65 E-value=2.2e-15 Score=145.96 Aligned_cols=116 Identities=22% Similarity=0.391 Sum_probs=100.6
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeC---CCCEEEEEEEecCCCCCCceeEEEE
Q 001764 7 VIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKYFNDDFVGFLK 83 (1016)
Q Consensus 7 V~~Ar~L~~~d~~g~~dPyv~v~~~~~k~kTkvi~~t~nP~WnE~f~f~v~~---~~~~L~v~V~D~d~~~~d~~lG~~~ 83 (1016)
|++|++|+. ..|.+||||++.+++.+++|++++++.||+|||+|.|.+.. ....|.|+|||++.++++++||++.
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 789999998 67899999999999999999999999999999999999953 4689999999999988999999999
Q ss_pred eecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEEEEEecCC
Q 001764 84 IPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHNTS 130 (1016)
Q Consensus 84 v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~~~~ 130 (1016)
+++.++... .....|++|.+..++ ..+|+|++.++|.+...
T Consensus 80 ~~l~~l~~~---~~~~~~~~L~~~~~~---~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 80 VSLQDLVSE---GLLEVTEPLLDSNGR---PTGATISLEVSYQPPDG 120 (127)
T ss_pred EEhhHcccC---CceEEEEeCcCCCCC---cccEEEEEEEEEeCCCC
Confidence 999999753 235789999865542 35799999999986644
No 92
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.65 E-value=3.2e-15 Score=144.68 Aligned_cols=118 Identities=27% Similarity=0.413 Sum_probs=100.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe---EEEeeeccCCCCCeeccEEEEEEeC-CCCEEEEEEEecCCCCCCc
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ---RFKTKVVRKSLSPSWEEEFSFKVED-LKDELVISVLDEDKYFNDD 77 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~~---k~kTkvi~~t~nP~WnE~f~f~v~~-~~~~L~v~V~D~d~~~~d~ 77 (1016)
.|.|+|++|++|+..+.++.+||||++.+++. ..+|+++++++||.|||+|.|.+.. ....|.|+|||++.+++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 58899999999999999999999999998643 5899999999999999999999965 3578999999999988999
Q ss_pred eeEEEEeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEEEEEec
Q 001764 78 FVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (1016)
Q Consensus 78 ~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~~ 128 (1016)
+||++.++|..+...+++.....|++|.+ .|+|+|.+.|...
T Consensus 82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~~---------~g~i~l~~~~~~~ 123 (126)
T cd04043 82 LCGRASLKLDPKRFGDDGLPREIWLDLDT---------QGRLLLRVSMEGE 123 (126)
T ss_pred eEEEEEEecCHHHcCCCCCCceEEEEcCC---------CCeEEEEEEEeee
Confidence 99999999988754332344678999974 4899999998643
No 93
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.65 E-value=1.3e-15 Score=147.28 Aligned_cols=105 Identities=26% Similarity=0.482 Sum_probs=92.4
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeeeecCCCCCCCeeeEEEEEEeeCC---CCCeEEEEEEEcc
Q 001764 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN---GKSRTSSIKFQQCDPMWNEIFEYDAMDE---PPSMLDVEVYDFD 608 (1016)
Q Consensus 535 ~~~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~---~~~~~T~~~~~t~nP~WnE~f~f~~~~~---~~~~L~i~V~D~d 608 (1016)
....|.|+|++|+||+.++..|.+||||++.+. +..++|++++++.||.|||+|.|.+.+. ....|.++|||+|
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d 93 (125)
T cd08386 14 QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYD 93 (125)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCC
Confidence 445699999999999999999999999999983 4458999999999999999999975321 2457999999999
Q ss_pred CCCCCCceeeEEEEEceecCCCCceeEEEECC
Q 001764 609 GPFNEATSLGHAEINFVKSDISDLADVWIPLQ 640 (1016)
Q Consensus 609 ~~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~ 640 (1016)
. ++++++||++.+++.++..+...+.|+.|.
T Consensus 94 ~-~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 94 R-FSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred C-CcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 8 889999999999999998888889999985
No 94
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.65 E-value=1e-15 Score=144.56 Aligned_cols=101 Identities=31% Similarity=0.510 Sum_probs=91.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCC-----CCEEEEEEEecCCCCCC
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDL-----KDELVISVLDEDKYFND 76 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~~k~kTkvi~~t~nP~WnE~f~f~v~~~-----~~~L~v~V~D~d~~~~d 76 (1016)
.|+|+|++|++|+ .|.+||||++.+++++++|++++++.||+|||+|.|.+... +..|.|+|||++.++++
T Consensus 5 ~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~ 80 (111)
T cd04011 5 QVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSD 80 (111)
T ss_pred EEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccC
Confidence 5899999999998 57899999999999999999999999999999999998432 46899999999998899
Q ss_pred ceeEEEEeecccccccCCCCCccEEEEccC
Q 001764 77 DFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (1016)
Q Consensus 77 ~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~ 106 (1016)
++||++.++|.++...+.+.....||+|.+
T Consensus 81 ~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 81 TLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred CccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 999999999999987776677889999964
No 95
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.65 E-value=1.4e-15 Score=146.64 Aligned_cols=118 Identities=21% Similarity=0.303 Sum_probs=99.3
Q ss_pred eEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC--eeeeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCCC
Q 001764 537 WLLTVALIKGDNLAAVDS-SGFCDPYVVFTCNG--KSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNE 613 (1016)
Q Consensus 537 ~~L~V~v~~A~~L~~~d~-~g~sDPyv~v~~~~--~~~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~~ 613 (1016)
|.|+|+|++|+||+..+. .|.+||||++.+++ ..++|+++.++.||.|||.|.|.+. ...+.|.|+|||++. .++
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~-~~~ 79 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFND-KRK 79 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCC-CCC
Confidence 569999999999997664 56799999999988 6699999999999999999999876 557899999999998 788
Q ss_pred CceeeEEEEEceecCCCCcee-EEEECCcCCcCcccceEEEEEEEe
Q 001764 614 ATSLGHAEINFVKSDISDLAD-VWIPLQGKLAQACQSKLHLRIFLN 658 (1016)
Q Consensus 614 dd~lG~~~i~l~~~~~~~~~~-~w~~L~~~~~~~~~g~l~l~~~~~ 658 (1016)
|++||++.+++.++..+.... .|..|... ....|+|++++.|.
T Consensus 80 d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~--~k~~G~i~~~l~~~ 123 (124)
T cd04044 80 DKLIGTAEFDLSSLLQNPEQENLTKNLLRN--GKPVGELNYDLRFF 123 (124)
T ss_pred CceeEEEEEEHHHhccCccccCcchhhhcC--CccceEEEEEEEeC
Confidence 999999999999988766554 45556532 23579999999873
No 96
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.64 E-value=1.2e-15 Score=146.94 Aligned_cols=101 Identities=27% Similarity=0.396 Sum_probs=87.3
Q ss_pred EEEEEEEEeecCCCCCC-CCCCCcEEEEEEC-----CeEEEeeeccCCCCCeeccEEEEEEeC---CCCEEEEEEEecCC
Q 001764 2 KLVVRVIEARNIPAMDQ-NGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDK 72 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~-~g~~dPyv~v~~~-----~~k~kTkvi~~t~nP~WnE~f~f~v~~---~~~~L~v~V~D~d~ 72 (1016)
+|.|+|++|+||++.+. .|.+||||++.+. ..++||+++++++||+|||+|.|.+.. ....|.|+|||++.
T Consensus 16 ~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~ 95 (125)
T cd04029 16 SLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDR 95 (125)
T ss_pred eEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC
Confidence 68999999999998875 5789999999984 235899999999999999999999953 35689999999999
Q ss_pred CCCCceeEEEEeecccccccCCCCCccEEEEcc
Q 001764 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105 (1016)
Q Consensus 73 ~~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~ 105 (1016)
++++++||++.++|..+... .....||+|+
T Consensus 96 ~~~~~~lG~~~i~l~~~~~~---~~~~~w~~l~ 125 (125)
T cd04029 96 FGRNTFLGEVEIPLDSWNFD---SQHEECLPLH 125 (125)
T ss_pred CCCCcEEEEEEEeCCccccc---CCcccEEECc
Confidence 99999999999999998643 2367899984
No 97
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.64 E-value=1.6e-15 Score=146.97 Aligned_cols=105 Identities=31% Similarity=0.428 Sum_probs=92.0
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeecCCCCCCCeeeEEEEEEeeCC--CCCeEEEEEEEc
Q 001764 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN-----GKSRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDF 607 (1016)
Q Consensus 535 ~~~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~WnE~f~f~~~~~--~~~~L~i~V~D~ 607 (1016)
..+.|+|+|++|+||+.++..+.+||||++.+. ...++|++++++.||.|||+|.|.+... ....|.|.|||+
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~ 93 (127)
T cd04030 14 QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNS 93 (127)
T ss_pred CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEEC
Confidence 345699999999999999999999999999985 3458999999999999999999987432 346899999999
Q ss_pred cCCC--CCCceeeEEEEEceecCCCCceeEEEECC
Q 001764 608 DGPF--NEATSLGHAEINFVKSDISDLADVWIPLQ 640 (1016)
Q Consensus 608 d~~~--~~dd~lG~~~i~l~~~~~~~~~~~w~~L~ 640 (1016)
+. + +++++||++.+++.++..+.....||+|.
T Consensus 94 ~~-~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 94 KS-FLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred Cc-ccCCCCceEEEEEEecccccccCCccceEECc
Confidence 87 5 68999999999999998888889999984
No 98
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.64 E-value=9.2e-16 Score=148.24 Aligned_cols=113 Identities=17% Similarity=0.207 Sum_probs=97.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeecCC-CCCCCeeeEEEEEEeeCCC----CCeEEEEEEEccCCCC
Q 001764 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNG-KSRTSSIKF-QQCDPMWNEIFEYDAMDEP----PSMLDVEVYDFDGPFN 612 (1016)
Q Consensus 539 L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~-~~~~T~~~~-~t~nP~WnE~f~f~~~~~~----~~~L~i~V~D~d~~~~ 612 (1016)
|+|+|++|++|+..+..+.+||||++.+++ .+++|++.. ++.||.|||.|.|.+.... ...|.|+|||++. ++
T Consensus 2 L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~-~~ 80 (125)
T cd04051 2 LEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP-SL 80 (125)
T ss_pred EEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC-CC
Confidence 899999999999999999999999999998 778998875 6899999999999875542 6789999999998 78
Q ss_pred CCceeeEEEEEceecCCCCc-----eeEEEECCcCCcCcccceEEE
Q 001764 613 EATSLGHAEINFVKSDISDL-----ADVWIPLQGKLAQACQSKLHL 653 (1016)
Q Consensus 613 ~dd~lG~~~i~l~~~~~~~~-----~~~w~~L~~~~~~~~~g~l~l 653 (1016)
.|++||++.+++.++..+.. ...||+|..+. ...+|.|++
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~-g~~~G~~~~ 125 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS-GKPQGVLNF 125 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC-CCcCeEEeC
Confidence 99999999999999876554 37899998754 345777764
No 99
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.63 E-value=2.1e-15 Score=146.03 Aligned_cols=105 Identities=21% Similarity=0.310 Sum_probs=88.3
Q ss_pred CCeEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CeeeeeecCCCCCCCeeeEEEEEE-eeCC--CCCeEEEEEEEc
Q 001764 535 DGWLLTVALIKGDNLAAVDSS-GFCDPYVVFTCN---GKSRTSSIKFQQCDPMWNEIFEYD-AMDE--PPSMLDVEVYDF 607 (1016)
Q Consensus 535 ~~~~L~V~v~~A~~L~~~d~~-g~sDPyv~v~~~---~~~~~T~~~~~t~nP~WnE~f~f~-~~~~--~~~~L~i~V~D~ 607 (1016)
....|+|+|++|+||+.++.. |.+||||++.+. +++++|+++++++||.|||+|.|. +... ....|.++|||+
T Consensus 14 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~ 93 (128)
T cd08388 14 EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSF 93 (128)
T ss_pred CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEc
Confidence 345799999999999999886 999999999985 334799999999999999999993 3211 234799999999
Q ss_pred cCCCCCCceeeEEEEEceecCCC--CceeEEEECC
Q 001764 608 DGPFNEATSLGHAEINFVKSDIS--DLADVWIPLQ 640 (1016)
Q Consensus 608 d~~~~~dd~lG~~~i~l~~~~~~--~~~~~w~~L~ 640 (1016)
|. +++|++||++.++|.++... +....|++|.
T Consensus 94 d~-~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 94 DR-YSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred CC-CCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 99 89999999999999998654 5568899885
No 100
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.63 E-value=5.9e-15 Score=144.00 Aligned_cols=115 Identities=26% Similarity=0.434 Sum_probs=99.4
Q ss_pred EEEEEEEEeecCCCCCCC----------CCCCcEEEEEECCeE-EEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEec
Q 001764 2 KLVVRVIEARNIPAMDQN----------GYSDPYVRLQLGRQR-FKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDE 70 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~----------g~~dPyv~v~~~~~k-~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~v~V~D~ 70 (1016)
.|+|+|++|++|+..+.. |.+||||++.+++++ .+|++++++.||.|||+|.|.+. ....|.|.|||+
T Consensus 5 ~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~d~ 83 (132)
T cd04014 5 TLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVFHD 83 (132)
T ss_pred EEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEEeC
Confidence 589999999999988863 679999999998865 69999999999999999999996 457899999999
Q ss_pred CCCCCCceeEEEEeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEEEEEe
Q 001764 71 DKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSH 127 (1016)
Q Consensus 71 d~~~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~ 127 (1016)
+.++++++||++.++|.++... .+.....|++|.+ .|+|+|.++|..
T Consensus 84 ~~~~~~~~iG~~~i~l~~l~~~-~~~~~~~w~~L~~---------~G~l~l~~~~~~ 130 (132)
T cd04014 84 AAIGPDDFVANCTISFEDLIQR-GSGSFDLWVDLEP---------QGKLHVKIELKG 130 (132)
T ss_pred CCCCCCceEEEEEEEhHHhccc-CCCcccEEEEccC---------CcEEEEEEEEec
Confidence 9888899999999999998753 1233688999973 499999999864
No 101
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.63 E-value=2.9e-15 Score=144.54 Aligned_cols=119 Identities=25% Similarity=0.403 Sum_probs=99.2
Q ss_pred EEEEEEEEeecCCCCCC-CCCCCcEEEEEECC--eEEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCCCCCce
Q 001764 2 KLVVRVIEARNIPAMDQ-NGYSDPYVRLQLGR--QRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDF 78 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~-~g~~dPyv~v~~~~--~k~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~v~V~D~d~~~~d~~ 78 (1016)
.|+|+|++|++|+..+. .+.+||||.+.+++ ...+|+++.++.||.|||.|.|.+......|.|+|||++..+++++
T Consensus 3 ~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~~ 82 (124)
T cd04044 3 VLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDKL 82 (124)
T ss_pred EEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCce
Confidence 58999999999997653 46799999999987 7899999999999999999999998668899999999999889999
Q ss_pred eEEEEeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEEEEEe
Q 001764 79 VGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSH 127 (1016)
Q Consensus 79 lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~ 127 (1016)
||++.+++.++...+. ....|+.|.. . .+..|+|++.++|.|
T Consensus 83 iG~~~~~l~~l~~~~~--~~~~~~~~~~-~----~k~~G~i~~~l~~~p 124 (124)
T cd04044 83 IGTAEFDLSSLLQNPE--QENLTKNLLR-N----GKPVGELNYDLRFFP 124 (124)
T ss_pred eEEEEEEHHHhccCcc--ccCcchhhhc-C----CccceEEEEEEEeCC
Confidence 9999999999975432 1223455543 2 245799999999964
No 102
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.63 E-value=1.5e-15 Score=146.78 Aligned_cols=116 Identities=21% Similarity=0.374 Sum_probs=99.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEeeecc-CCCCCeeccEEEEEEeCC-----CCEEEEEEEecCCCC
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-QRFKTKVVR-KSLSPSWEEEFSFKVEDL-----KDELVISVLDEDKYF 74 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~-~k~kTkvi~-~t~nP~WnE~f~f~v~~~-----~~~L~v~V~D~d~~~ 74 (1016)
+|+|+|++|++|+..+..+.+||||.+.+++ ++++|+++. ++.||+|||.|.|.+... ...|.|+|||++.++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 4899999999999999889999999999988 889999986 589999999999999655 689999999999988
Q ss_pred CCceeEEEEeecccccccCCC--CCccEEEEccCCCCCCCCCcceEEEE
Q 001764 75 NDDFVGFLKIPVSRVFDADNK--SLPTAWHSLQPKNKKSKNKDCGEILL 121 (1016)
Q Consensus 75 ~d~~lG~~~v~l~~l~~~~~~--~~~~~w~~L~~~~~~~~~~~~G~I~l 121 (1016)
++++||++.+++.++...... .....||.|....+ +..|.|++
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g----~~~G~~~~ 125 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG----KPQGVLNF 125 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCC----CcCeEEeC
Confidence 999999999999999864432 13578999997654 46788764
No 103
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.63 E-value=5.2e-15 Score=146.06 Aligned_cols=120 Identities=21% Similarity=0.253 Sum_probs=97.2
Q ss_pred EEEEEEEeec--CCCCCCCCCCCcEEEEEE--C---CeeeeeecCCCCCCCeeeEEEEEEeeCCC--------CCeEEEE
Q 001764 539 LTVALIKGDN--LAAVDSSGFCDPYVVFTC--N---GKSRTSSIKFQQCDPMWNEIFEYDAMDEP--------PSMLDVE 603 (1016)
Q Consensus 539 L~V~v~~A~~--L~~~d~~g~sDPyv~v~~--~---~~~~~T~~~~~t~nP~WnE~f~f~~~~~~--------~~~L~i~ 603 (1016)
..++|..|++ |+..+..|.+||||++.+ . .++.+|+++++|+||+|||+|.|.+.... ...|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 3455555555 889888999999999986 2 34599999999999999999999884331 3469999
Q ss_pred EEEccCCC-CCCceeeEEEEEceecCCCCceeEEEECCcCCcCcccceEEEEEEEeec
Q 001764 604 VYDFDGPF-NEATSLGHAEINFVKSDISDLADVWIPLQGKLAQACQSKLHLRIFLNNT 660 (1016)
Q Consensus 604 V~D~d~~~-~~dd~lG~~~i~l~~~~~~~~~~~w~~L~~~~~~~~~g~l~l~~~~~~~ 660 (1016)
|||.+. + .+|++||++.++|..+........|++|.. +.+..+|+|++++.+...
T Consensus 84 V~d~~~-f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~-~~k~~Gg~l~v~ir~r~p 139 (155)
T cd08690 84 VYHKGG-FLRSDKLLGTAQVKLEPLETKCEIHESVDLMD-GRKATGGKLEVKVRLREP 139 (155)
T ss_pred EEeCCC-cccCCCeeEEEEEEcccccccCcceEEEEhhh-CCCCcCCEEEEEEEecCC
Confidence 999997 6 579999999999999977766788999873 345678999999998643
No 104
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.63 E-value=1.3e-16 Score=171.49 Aligned_cols=126 Identities=23% Similarity=0.399 Sum_probs=105.4
Q ss_pred HHHHHhhhhcCCCCC-------cccCCCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeecCCCCCCC
Q 001764 515 SRFMQARKQKGSDHG-------VKAQGDGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNG-----KSRTSSIKFQQCDP 582 (1016)
Q Consensus 515 ~~~~~~~~~~~~d~~-------~~~~~~~~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~-----~~~~T~~~~~t~nP 582 (1016)
+++.....++|.||. ..++.....|+|+|.+|+||.+||.+|.|||||.+.+-. .+++|++++.++||
T Consensus 151 rCv~nVPslCG~DhtE~RGrl~l~~~~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP 230 (683)
T KOG0696|consen 151 RCVENVPSLCGTDHTERRGRLYLEAHIKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNP 230 (683)
T ss_pred HHhhcCCcccCCcchhhcceEEEEEEecCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCc
Confidence 445566677777763 334446677999999999999999999999999999742 23899999999999
Q ss_pred eeeEEEEEEee-CCCCCeEEEEEEEccCCCCCCceeeEEEEEceecCCCCceeEEEECCcC
Q 001764 583 MWNEIFEYDAM-DEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGK 642 (1016)
Q Consensus 583 ~WnE~f~f~~~-~~~~~~L~i~V~D~d~~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~~~ 642 (1016)
+|||+|+|++. .+...+|.|+|||||+ -+++||+|...+.++++.. .+.+.||.|...
T Consensus 231 ~wNEtftf~Lkp~DkdrRlsiEvWDWDr-TsRNDFMGslSFgisEl~K-~p~~GWyKlLsq 289 (683)
T KOG0696|consen 231 VWNETFTFKLKPSDKDRRLSIEVWDWDR-TSRNDFMGSLSFGISELQK-APVDGWYKLLSQ 289 (683)
T ss_pred cccceeEEecccccccceeEEEEecccc-cccccccceecccHHHHhh-cchhhHHHHhhh
Confidence 99999999984 4567899999999999 7899999999999999874 457999999753
No 105
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.62 E-value=2e-15 Score=144.08 Aligned_cols=99 Identities=26% Similarity=0.503 Sum_probs=84.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeC--CCCEEEEEEEecCCCC
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVED--LKDELVISVLDEDKYF 74 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~-----~k~kTkvi~~t~nP~WnE~f~f~v~~--~~~~L~v~V~D~d~~~ 74 (1016)
+|.|+|++|+||++++ .|.+||||++.+.. .+++|+++++++||+|||+|.|.+.. ....|.|+|||++...
T Consensus 13 ~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~~ 91 (119)
T cd08685 13 KLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSKS 91 (119)
T ss_pred EEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCCc
Confidence 6999999999999998 78999999999963 36799999999999999999999843 3467999999999865
Q ss_pred -CCceeEEEEeecccccccCCCCCccEEEEc
Q 001764 75 -NDDFVGFLKIPVSRVFDADNKSLPTAWHSL 104 (1016)
Q Consensus 75 -~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L 104 (1016)
++++||++.|++.++..+ ....+||.|
T Consensus 92 ~~~~~lG~~~i~l~~~~~~---~~~~~Wy~l 119 (119)
T cd08685 92 RDSGLLGCMSFGVKSIVNQ---KEISGWYYL 119 (119)
T ss_pred CCCEEEEEEEecHHHhccC---ccccceEeC
Confidence 478999999999999642 235789986
No 106
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.62 E-value=2e-15 Score=142.64 Aligned_cols=100 Identities=22% Similarity=0.420 Sum_probs=87.4
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeecCCCCCCCeeeEEEEEEeeCCC----CCeEEEEEEEccCCCC
Q 001764 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEP----PSMLDVEVYDFDGPFN 612 (1016)
Q Consensus 537 ~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~~~~~~----~~~L~i~V~D~d~~~~ 612 (1016)
+.|+|+|++|+||+ .|.+||||++++++++++|++++++.||.|||+|.|.+..+. ...|.|+|||++. ++
T Consensus 4 ~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~-~~ 78 (111)
T cd04011 4 FQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS-LR 78 (111)
T ss_pred EEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc-cc
Confidence 56999999999998 578999999999999999999999999999999999874432 3579999999998 88
Q ss_pred CCceeeEEEEEceecCCC---CceeEEEECCc
Q 001764 613 EATSLGHAEINFVKSDIS---DLADVWIPLQG 641 (1016)
Q Consensus 613 ~dd~lG~~~i~l~~~~~~---~~~~~w~~L~~ 641 (1016)
+|++||++.++|+++..+ .....|++|..
T Consensus 79 ~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 79 SDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred cCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 899999999999998655 33588999963
No 107
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.62 E-value=1.9e-15 Score=144.74 Aligned_cols=104 Identities=20% Similarity=0.245 Sum_probs=89.8
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C----eeeeeecCCCCCCCeeeEEEEEEeeCC--CCCeEEEEEEE
Q 001764 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN--G----KSRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYD 606 (1016)
Q Consensus 535 ~~~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~--~----~~~~T~~~~~t~nP~WnE~f~f~~~~~--~~~~L~i~V~D 606 (1016)
..+.|.|+|++|+||+.++..|.+||||++.+- + .+++|+++++++||+|||+|.|++..+ ....|.|.|||
T Consensus 12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~ 91 (124)
T cd08680 12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCS 91 (124)
T ss_pred CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEe
Confidence 345699999999999999999999999999963 2 358999999999999999999987443 45689999999
Q ss_pred ccCCCCCCceeeEEEEEceecCCCC-ceeEEEEC
Q 001764 607 FDGPFNEATSLGHAEINFVKSDISD-LADVWIPL 639 (1016)
Q Consensus 607 ~d~~~~~dd~lG~~~i~l~~~~~~~-~~~~w~~L 639 (1016)
+|. ++++++||.+.|+|.++.... ....||+|
T Consensus 92 ~~~-~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 92 VGP-DQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CCC-CCceeEEEEEEEEhhhccCCCccccccccC
Confidence 998 899999999999999986553 46789986
No 108
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.62 E-value=2.5e-15 Score=144.98 Aligned_cols=105 Identities=26% Similarity=0.356 Sum_probs=94.2
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeecCCC-CCCCeeeEEEEEEeeCC---CCCeEEEEEEEccCCCC
Q 001764 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQ-QCDPMWNEIFEYDAMDE---PPSMLDVEVYDFDGPFN 612 (1016)
Q Consensus 537 ~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~-t~nP~WnE~f~f~~~~~---~~~~L~i~V~D~d~~~~ 612 (1016)
|.|.|+|++|+||+.++..+.+||||++.++++.++|++..+ +.||.|||.|.|.+... ....|.|+|||++. +.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~-~~ 79 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN-FS 79 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc-CC
Confidence 359999999999999999999999999999988888888874 99999999999987554 25789999999998 88
Q ss_pred CCceeeEEEEEceecCCCCceeEEEECCcC
Q 001764 613 EATSLGHAEINFVKSDISDLADVWIPLQGK 642 (1016)
Q Consensus 613 ~dd~lG~~~i~l~~~~~~~~~~~w~~L~~~ 642 (1016)
+|++||++.+++.++..++..+.|+.|..+
T Consensus 80 ~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 80 DDDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred CCCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 999999999999998877788999999864
No 109
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.62 E-value=2.9e-15 Score=144.73 Aligned_cols=101 Identities=31% Similarity=0.572 Sum_probs=87.4
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeC----CCCEEEEEEEecC
Q 001764 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVED----LKDELVISVLDED 71 (1016)
Q Consensus 1 m~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~-----~k~kTkvi~~t~nP~WnE~f~f~v~~----~~~~L~v~V~D~d 71 (1016)
.+|.|+|++|+||+..+.++.+||||++.+.+ .+++|+++++++||+|||+|.|.+.. ....|.|+|||++
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~ 95 (125)
T cd04031 16 SQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYD 95 (125)
T ss_pred CEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCC
Confidence 37999999999999999889999999999964 57899999999999999999998633 3578999999999
Q ss_pred CCCCCceeEEEEeecccccccCCCCCccEEEEcc
Q 001764 72 KYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105 (1016)
Q Consensus 72 ~~~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~ 105 (1016)
.++++++||++.++|.+... + ....||+|+
T Consensus 96 ~~~~~~~iG~~~i~l~~~~~-~---~~~~W~~L~ 125 (125)
T cd04031 96 RDGENDFLGEVVIDLADALL-D---DEPHWYPLQ 125 (125)
T ss_pred CCCCCcEeeEEEEecccccc-c---CCcceEECc
Confidence 98899999999999998432 1 246899985
No 110
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.62 E-value=2.5e-15 Score=151.21 Aligned_cols=106 Identities=23% Similarity=0.388 Sum_probs=92.6
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeecCCCCCCCeeeEEEEEEeeCC---CCCeEEEEEEE
Q 001764 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN-----GKSRTSSIKFQQCDPMWNEIFEYDAMDE---PPSMLDVEVYD 606 (1016)
Q Consensus 535 ~~~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~WnE~f~f~~~~~---~~~~L~i~V~D 606 (1016)
..+.|.|+|++|+||+.++..|.+||||++.+. ...++|++++++.||.|||+|.|.+... ....|.|+|||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 456799999999999999999999999999873 2458999999999999999999975321 34579999999
Q ss_pred ccCCCCCCceeeEEEEEceecCCCCceeEEEECCc
Q 001764 607 FDGPFNEATSLGHAEINFVKSDISDLADVWIPLQG 641 (1016)
Q Consensus 607 ~d~~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~~ 641 (1016)
+|. ++++++||++.+++.++...+..+.|+.|.+
T Consensus 105 ~d~-~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 105 HDK-LSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred CCC-CCCCceEEEEEEeCCccccCCCccccccCCh
Confidence 999 8889999999999999887777899999974
No 111
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.62 E-value=2.5e-15 Score=143.89 Aligned_cols=101 Identities=24% Similarity=0.384 Sum_probs=87.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC------CeEEEeeeccCCCCCeeccEEEEEEeC---CCCEEEEEEEecCC
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG------RQRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDK 72 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~------~~k~kTkvi~~t~nP~WnE~f~f~v~~---~~~~L~v~V~D~d~ 72 (1016)
+|.|+|++|+||++.+..+.+||||++.+. ..+++|+++++++||+|||+|.|++.. .+..|.|+|||++.
T Consensus 15 ~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~ 94 (124)
T cd08680 15 SLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGP 94 (124)
T ss_pred EEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCCC
Confidence 699999999999999888899999999984 247999999999999999999999954 35799999999999
Q ss_pred CCCCceeEEEEeecccccccCCCCCccEEEEc
Q 001764 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSL 104 (1016)
Q Consensus 73 ~~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L 104 (1016)
++++++||++.|+|.++.... .....||.|
T Consensus 95 ~~~~~~lG~~~i~L~~~~~~~--~~~~~Wy~l 124 (124)
T cd08680 95 DQQEECLGGAQISLADFESSE--EMSTKWYNL 124 (124)
T ss_pred CCceeEEEEEEEEhhhccCCC--ccccccccC
Confidence 999999999999999984322 135679876
No 112
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.62 E-value=8.9e-15 Score=142.37 Aligned_cols=119 Identities=24% Similarity=0.401 Sum_probs=99.9
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------------eEEEeeeccCCCCCee-ccEEEEEEeCCCCEEEEE
Q 001764 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-------------QRFKTKVVRKSLSPSW-EEEFSFKVEDLKDELVIS 66 (1016)
Q Consensus 1 m~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~-------------~k~kTkvi~~t~nP~W-nE~f~f~v~~~~~~L~v~ 66 (1016)
+...|++++|+||+ ++..|++||||++.+.. ++++|+++++++||+| ||+|.|.+. ....|.|+
T Consensus 1 ~~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~-~~~~L~v~ 78 (137)
T cd08691 1 LSFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL-PTDVLEIE 78 (137)
T ss_pred CEEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC-CCCEEEEE
Confidence 34679999999998 77889999999999942 4699999999999999 999999995 45689999
Q ss_pred EEecCCCCC---CceeEEEEeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEE
Q 001764 67 VLDEDKYFN---DDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTI 123 (1016)
Q Consensus 67 V~D~d~~~~---d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l 123 (1016)
|||++..++ +++||++.+++.++...+.......||+|..+.. ...+.|+|.|.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~--~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTP--TDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCC--CCcEEEEEEEEe
Confidence 999875333 7999999999999987665555778999997763 357889999875
No 113
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.62 E-value=3.8e-15 Score=139.45 Aligned_cols=91 Identities=25% Similarity=0.486 Sum_probs=81.3
Q ss_pred EEEEEEEEeecCCCCCCC----CCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeC--CCCEEEEEEEecCCCCC
Q 001764 2 KLVVRVIEARNIPAMDQN----GYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVED--LKDELVISVLDEDKYFN 75 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~----g~~dPyv~v~~~~~k~kTkvi~~t~nP~WnE~f~f~v~~--~~~~L~v~V~D~d~~~~ 75 (1016)
.|.|+|++|++|++.+.. +.+||||++.++++++||+++++++||+|||.|.|.+.+ ....|.|.|||++.+++
T Consensus 2 ~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~~ 81 (108)
T cd04039 2 VVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFSF 81 (108)
T ss_pred EEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCCC
Confidence 389999999999988642 358999999999999999999999999999999999843 34589999999999999
Q ss_pred CceeEEEEeeccccccc
Q 001764 76 DDFVGFLKIPVSRVFDA 92 (1016)
Q Consensus 76 d~~lG~~~v~l~~l~~~ 92 (1016)
|++||++.++|.++...
T Consensus 82 dd~IG~~~l~L~~l~~~ 98 (108)
T cd04039 82 NDYVATGSLSVQELLNA 98 (108)
T ss_pred CcceEEEEEEHHHHHhh
Confidence 99999999999999754
No 114
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.62 E-value=2.1e-15 Score=142.44 Aligned_cols=99 Identities=29% Similarity=0.581 Sum_probs=86.9
Q ss_pred EEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CeEEEeeeccCCCCCeeccEEEEEEeC----CCCEEEEEEEecCCC
Q 001764 2 KLVVRVIEARNIPAMDQN-GYSDPYVRLQLG---RQRFKTKVVRKSLSPSWEEEFSFKVED----LKDELVISVLDEDKY 73 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~-g~~dPyv~v~~~---~~k~kTkvi~~t~nP~WnE~f~f~v~~----~~~~L~v~V~D~d~~ 73 (1016)
.|+|+|++|++|++.+.. +.+||||++.+. ....+|+++++++||+|||+|.|.+.. ....|.++|||++.+
T Consensus 2 ~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~ 81 (111)
T cd04041 2 VLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRF 81 (111)
T ss_pred EEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCCC
Confidence 589999999999999988 899999999984 346899999999999999999998843 356899999999999
Q ss_pred CCCceeEEEEeecccccccCCCCCccEEEEccC
Q 001764 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (1016)
Q Consensus 74 ~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~ 106 (1016)
++|++||++.+++.++.. ...|++++.
T Consensus 82 ~~dd~lG~~~i~l~~l~~------~~~~~~~~~ 108 (111)
T cd04041 82 TADDRLGRVEIDLKELIE------DRNWMGRRE 108 (111)
T ss_pred CCCCcceEEEEEHHHHhc------CCCCCcccc
Confidence 999999999999999963 356888763
No 115
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.62 E-value=2.6e-15 Score=144.71 Aligned_cols=104 Identities=28% Similarity=0.423 Sum_probs=90.6
Q ss_pred CCeEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eeeeeecCCCCCCCeeeEEEEEEeeCC--CCCeEEEEEEE
Q 001764 535 DGWLLTVALIKGDNLAAVD-SSGFCDPYVVFTCNG-----KSRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYD 606 (1016)
Q Consensus 535 ~~~~L~V~v~~A~~L~~~d-~~g~sDPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~~~~~--~~~~L~i~V~D 606 (1016)
..+.|.|+|++|+||+.++ ..|.+||||++.+.. .+++|++++++.||.|||+|.|.+... ....|.|+|||
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d 91 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWH 91 (123)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEe
Confidence 4457999999999999998 788999999999732 348999999999999999999987432 25689999999
Q ss_pred ccCCCCCCceeeEEEEEceecCCCCceeEEEEC
Q 001764 607 FDGPFNEATSLGHAEINFVKSDISDLADVWIPL 639 (1016)
Q Consensus 607 ~d~~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L 639 (1016)
+|. ++++++||++.++|.++..+...+.||+|
T Consensus 92 ~~~-~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 92 HDR-FGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred CCC-CcCCceeeEEEEecccccccCCCccEEEC
Confidence 998 88999999999999999777778999997
No 116
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.61 E-value=3.7e-15 Score=143.83 Aligned_cols=101 Identities=30% Similarity=0.572 Sum_probs=89.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEeeeccCCCCCeeccEEEEEEeCC---CCEEEEEEEecCCCCC
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG---RQRFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDEDKYFN 75 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~---~~k~kTkvi~~t~nP~WnE~f~f~v~~~---~~~L~v~V~D~d~~~~ 75 (1016)
.|.|+|++|+||++.+..|.+||||++.+. ...++|+++++++||+|||+|.|.+... ...|.|+|||++.+++
T Consensus 17 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~ 96 (124)
T cd08387 17 ILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFSR 96 (124)
T ss_pred EEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCCCC
Confidence 589999999999999999999999999984 3468999999999999999999998532 4689999999999999
Q ss_pred CceeEEEEeecccccccCCCCCccEEEEcc
Q 001764 76 DDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105 (1016)
Q Consensus 76 d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~ 105 (1016)
+++||++.+++.++...+ ....||+|+
T Consensus 97 ~~~iG~~~i~l~~~~~~~---~~~~W~~l~ 123 (124)
T cd08387 97 DECIGVVELPLAEVDLSE---KLDLWRKIQ 123 (124)
T ss_pred CceeEEEEEecccccCCC---CcceEEECc
Confidence 999999999999996433 457899986
No 117
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.61 E-value=4.3e-15 Score=143.84 Aligned_cols=104 Identities=37% Similarity=0.598 Sum_probs=87.8
Q ss_pred EEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CeEEEeeeccCCCCCeeccEEEEE-EeC---CCCEEEEEEEecCCC
Q 001764 2 KLVVRVIEARNIPAMDQN-GYSDPYVRLQLG---RQRFKTKVVRKSLSPSWEEEFSFK-VED---LKDELVISVLDEDKY 73 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~-g~~dPyv~v~~~---~~k~kTkvi~~t~nP~WnE~f~f~-v~~---~~~~L~v~V~D~d~~ 73 (1016)
+|.|+|++|+||+..+.. +.+||||++.+. .++.||+++++++||+|||+|.|. +.. ....|.+.|||++.+
T Consensus 17 ~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~ 96 (128)
T cd08388 17 ALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRY 96 (128)
T ss_pred EEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCC
Confidence 689999999999998876 899999999985 346799999999999999999994 432 235799999999999
Q ss_pred CCCceeEEEEeecccccccCCCCCccEEEEccC
Q 001764 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (1016)
Q Consensus 74 ~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~ 106 (1016)
+++++||++.++|.++...+++. ...|.+|++
T Consensus 97 ~~d~~lG~~~i~L~~l~~~~~~~-~~~~~~~~~ 128 (128)
T cd08388 97 SRDDVIGEVVCPLAGADLLNEGE-LLVSREIQP 128 (128)
T ss_pred CCCceeEEEEEeccccCCCCCce-EEEEEeccC
Confidence 99999999999999986543332 577988874
No 118
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.61 E-value=5.1e-15 Score=143.06 Aligned_cols=103 Identities=34% Similarity=0.629 Sum_probs=89.4
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEeeeccCCCCCeeccEEEEEEeC----CCCEEEEEEEecCCC
Q 001764 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLG---RQRFKTKVVRKSLSPSWEEEFSFKVED----LKDELVISVLDEDKY 73 (1016)
Q Consensus 1 m~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~---~~k~kTkvi~~t~nP~WnE~f~f~v~~----~~~~L~v~V~D~d~~ 73 (1016)
++|.|+|++|+||+..+..+.+||||++.+. .++.+|+++++++||+|||+|.|.+.+ ....|.++|||++.+
T Consensus 16 ~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~ 95 (125)
T cd08386 16 STLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRF 95 (125)
T ss_pred CEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCC
Confidence 5799999999999999989999999999983 467899999999999999999998522 246799999999998
Q ss_pred CCCceeEEEEeecccccccCCCCCccEEEEccC
Q 001764 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (1016)
Q Consensus 74 ~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~ 106 (1016)
+++++||++.+++.++... .....|+.|++
T Consensus 96 ~~~~~iG~~~i~l~~l~~~---~~~~~W~~l~~ 125 (125)
T cd08386 96 SRNDPIGEVSLPLNKVDLT---EEQTFWKDLKP 125 (125)
T ss_pred cCCcEeeEEEEecccccCC---CCcceEEecCC
Confidence 9999999999999998642 23678999974
No 119
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.61 E-value=4.9e-15 Score=142.72 Aligned_cols=105 Identities=29% Similarity=0.446 Sum_probs=92.1
Q ss_pred CCeEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC---CeeeeeecCCCCCCCeeeEEEEEEeeCC--CCCeEEEEEEEcc
Q 001764 535 DGWLLTVALIKGDNLAAVD-SSGFCDPYVVFTCN---GKSRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDFD 608 (1016)
Q Consensus 535 ~~~~L~V~v~~A~~L~~~d-~~g~sDPyv~v~~~---~~~~~T~~~~~t~nP~WnE~f~f~~~~~--~~~~L~i~V~D~d 608 (1016)
..+.|.|+|++|+||+.++ ..|.+||||++.+. .+.++|+++++++||+|||.|.|.+... ....|.|+|||++
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~ 91 (123)
T cd08390 12 EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVD 91 (123)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECC
Confidence 3456999999999999998 68899999999973 3348899999999999999999987432 2457999999999
Q ss_pred CCCCCCceeeEEEEEceecCCCCceeEEEECC
Q 001764 609 GPFNEATSLGHAEINFVKSDISDLADVWIPLQ 640 (1016)
Q Consensus 609 ~~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~ 640 (1016)
. .+++++||++.++|.++......+.|++|+
T Consensus 92 ~-~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 92 R-FSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred c-CCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 8 788999999999999999888889999996
No 120
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.61 E-value=4.1e-15 Score=142.24 Aligned_cols=103 Identities=22% Similarity=0.325 Sum_probs=91.1
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCCCCc
Q 001764 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGK-SRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEAT 615 (1016)
Q Consensus 537 ~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~-~~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~~dd 615 (1016)
|+|+|+|++|+||+..+..|.+||||++.+++. ..+|+++.++.||.|||.|.|.+... .+.|.|+|||++. +++|+
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~-~~~d~ 78 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEK-VGKDR 78 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCC-CCCCC
Confidence 469999999999999999999999999999875 48999999999999999999976443 5799999999998 88999
Q ss_pred eeeEEEEEceecCCCCceeEEEECCcC
Q 001764 616 SLGHAEINFVKSDISDLADVWIPLQGK 642 (1016)
Q Consensus 616 ~lG~~~i~l~~~~~~~~~~~w~~L~~~ 642 (1016)
+||++.+++.++..+ ..+.||.|...
T Consensus 79 ~IG~~~~~l~~l~~~-~~~~~~~~~~~ 104 (120)
T cd04045 79 SLGSVEINVSDLIKK-NEDGKYVEYDD 104 (120)
T ss_pred eeeEEEEeHHHhhCC-CCCceEEecCC
Confidence 999999999998765 56888888654
No 121
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.61 E-value=5.6e-15 Score=142.53 Aligned_cols=101 Identities=40% Similarity=0.684 Sum_probs=88.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEEEeeeccCCCCCeeccEEEEEEeC---CCCEEEEEEEecCCCCC
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR---QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKYFN 75 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~---~k~kTkvi~~t~nP~WnE~f~f~v~~---~~~~L~v~V~D~d~~~~ 75 (1016)
+|.|+|++|+||++.+..+.+||||++.+.+ .+++|+++++++||+|||+|.|.+.. ....|.|+|||++.+++
T Consensus 17 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~~ 96 (124)
T cd08385 17 QLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFSK 96 (124)
T ss_pred EEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCCCC
Confidence 6899999999999999999999999999853 46899999999999999999999853 24689999999999999
Q ss_pred CceeEEEEeecccccccCCCCCccEEEEcc
Q 001764 76 DDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105 (1016)
Q Consensus 76 d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~ 105 (1016)
+++||++.+++.++.. +.....|+.|.
T Consensus 97 ~~~lG~~~i~l~~~~~---~~~~~~W~~l~ 123 (124)
T cd08385 97 HDLIGEVRVPLLTVDL---GHVTEEWRDLE 123 (124)
T ss_pred CceeEEEEEecCcccC---CCCcceEEEcc
Confidence 9999999999999854 33467899985
No 122
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.61 E-value=3.6e-15 Score=147.56 Aligned_cols=99 Identities=28% Similarity=0.523 Sum_probs=87.2
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----------------------------eeeeecCCCCCCCeee
Q 001764 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGK-----------------------------SRTSSIKFQQCDPMWN 585 (1016)
Q Consensus 535 ~~~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~-----------------------------~~~T~~~~~t~nP~Wn 585 (1016)
+.+.|.|+|++|+||+.+|..|.+||||+|.+... .++|+++++++||.||
T Consensus 26 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~Wn 105 (153)
T cd08676 26 PIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWN 105 (153)
T ss_pred CeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCccc
Confidence 56789999999999999999999999999998531 2689999999999999
Q ss_pred EEEEEEeeCCCCCeEEEEEEEccCCCCCCceeeEEEEEceecCCCCceeEEEEC
Q 001764 586 EIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPL 639 (1016)
Q Consensus 586 E~f~f~~~~~~~~~L~i~V~D~d~~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L 639 (1016)
|+|.|.+.......|.|+|||+| +++||++.++++++.. ...+.||+|
T Consensus 106 E~F~f~v~~~~~~~L~i~V~D~d-----d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 106 ETFRFEVEDVSNDQLHLDIWDHD-----DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred cEEEEEeccCCCCEEEEEEEecC-----CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 99999886545678999999986 6899999999999884 457999987
No 123
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.60 E-value=3.5e-15 Score=146.07 Aligned_cols=103 Identities=24% Similarity=0.389 Sum_probs=92.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC----CeeeeeecCCCCCCCeeeEEEEEEeeCC---------------CCCe
Q 001764 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCN----GKSRTSSIKFQQCDPMWNEIFEYDAMDE---------------PPSM 599 (1016)
Q Consensus 539 L~V~v~~A~~L~~~d~~g~sDPyv~v~~~----~~~~~T~~~~~t~nP~WnE~f~f~~~~~---------------~~~~ 599 (1016)
|+|+|++|+||+.+ ..|.+||||++.++ +..++|+++.++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999999 88999999999998 6679999999999999999999987554 4568
Q ss_pred EEEEEEEccCCCCCCceeeEEEEEceecCCCCceeEEEECCcCC
Q 001764 600 LDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKL 643 (1016)
Q Consensus 600 L~i~V~D~d~~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~~~~ 643 (1016)
|.|+|||++. ++++++||++.+++.++........|++|..+.
T Consensus 80 l~i~V~d~~~-~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASM-VSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCc-CcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 9999999998 788999999999999988777789999998654
No 124
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.60 E-value=5.1e-15 Score=142.50 Aligned_cols=104 Identities=17% Similarity=0.353 Sum_probs=90.2
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeeeecCCCCCCCeeeEEEEEE-eeCC--CCCeEEEEEEEcc
Q 001764 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN---GKSRTSSIKFQQCDPMWNEIFEYD-AMDE--PPSMLDVEVYDFD 608 (1016)
Q Consensus 535 ~~~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~---~~~~~T~~~~~t~nP~WnE~f~f~-~~~~--~~~~L~i~V~D~d 608 (1016)
....|.|+|++|+||++++..|.+||||++.+. .++++|+++++ .||+|||+|.|+ +... ....|.++|||+|
T Consensus 14 ~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~ 92 (124)
T cd08389 14 SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVE 92 (124)
T ss_pred CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECC
Confidence 345699999999999999999999999998763 23488999888 999999999997 4321 3567999999999
Q ss_pred CCCCCCceeeEEEEEceecCCCCceeEEEECC
Q 001764 609 GPFNEATSLGHAEINFVKSDISDLADVWIPLQ 640 (1016)
Q Consensus 609 ~~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~ 640 (1016)
. ++++++||++.|+|+++..+.....|++|+
T Consensus 93 ~-~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 93 R-MRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred C-cccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 8 899999999999999998888899999996
No 125
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.60 E-value=5.5e-15 Score=145.44 Aligned_cols=91 Identities=32% Similarity=0.496 Sum_probs=83.9
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCCCCce
Q 001764 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATS 616 (1016)
Q Consensus 537 ~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~~dd~ 616 (1016)
|.|+|+|++|+||+..+. +.+||||++.++++..+|++++++.||.|||+|.|.+... ...|.|+|||+|. +++|++
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~-~~~dd~ 78 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDT-FSKDDS 78 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCC-CCCCCE
Confidence 579999999999999997 8999999999999999999999999999999999987544 7889999999999 899999
Q ss_pred eeEEEEEceecCCC
Q 001764 617 LGHAEINFVKSDIS 630 (1016)
Q Consensus 617 lG~~~i~l~~~~~~ 630 (1016)
||++.+++.++...
T Consensus 79 iG~a~i~l~~l~~~ 92 (145)
T cd04038 79 MGEAEIDLEPLVEA 92 (145)
T ss_pred EEEEEEEHHHhhhh
Confidence 99999999997644
No 126
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.60 E-value=6.9e-15 Score=141.61 Aligned_cols=102 Identities=34% Similarity=0.491 Sum_probs=88.1
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEeeeccCCCCCeeccEEEEE-EeC---CCCEEEEEEEecCCC
Q 001764 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLG---RQRFKTKVVRKSLSPSWEEEFSFK-VED---LKDELVISVLDEDKY 73 (1016)
Q Consensus 1 m~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~---~~k~kTkvi~~t~nP~WnE~f~f~-v~~---~~~~L~v~V~D~d~~ 73 (1016)
.+|.|+|++|+||++.+..|.+||||++.+. .++++|+++++ .||+|||+|.|+ +.. ....|.+.|||++.+
T Consensus 16 ~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~ 94 (124)
T cd08389 16 RKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERM 94 (124)
T ss_pred CEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCc
Confidence 3799999999999999988999999998773 35789999887 999999999998 532 357899999999999
Q ss_pred CCCceeEEEEeecccccccCCCCCccEEEEccC
Q 001764 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (1016)
Q Consensus 74 ~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~ 106 (1016)
+++++||++.|+|.++.. ......||+|++
T Consensus 95 ~~~~~lG~~~i~L~~l~~---~~~~~~w~~L~p 124 (124)
T cd08389 95 RKERLIGEKVVPLSQLNL---EGETTVWLTLEP 124 (124)
T ss_pred ccCceEEEEEEeccccCC---CCCceEEEeCCC
Confidence 999999999999999954 234678999974
No 127
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.59 E-value=5.5e-15 Score=141.72 Aligned_cols=92 Identities=23% Similarity=0.327 Sum_probs=82.1
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeecCCCCCCCeeeEEEEEEe-eCCCCCeEEEEEEEccCCCCC
Q 001764 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDA-MDEPPSMLDVEVYDFDGPFNE 613 (1016)
Q Consensus 535 ~~~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~~-~~~~~~~L~i~V~D~d~~~~~ 613 (1016)
..+.|+|+|++|++|+. +..|.+||||+|.++++.++|+++++++||+|||+|.|.. .....+.|.|+|||+|. +++
T Consensus 26 ~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~-~s~ 103 (127)
T cd04032 26 GLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDN-GWD 103 (127)
T ss_pred CcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCC-CCC
Confidence 44679999999999984 7788999999999999999999999999999999999964 33457799999999999 889
Q ss_pred CceeeEEEEEceecC
Q 001764 614 ATSLGHAEINFVKSD 628 (1016)
Q Consensus 614 dd~lG~~~i~l~~~~ 628 (1016)
|++||++.++|....
T Consensus 104 dd~IG~~~i~l~~~~ 118 (127)
T cd04032 104 DDLLGTCSVVPEAGV 118 (127)
T ss_pred CCeeEEEEEEecCCc
Confidence 999999999998644
No 128
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.59 E-value=2.3e-14 Score=140.04 Aligned_cols=119 Identities=18% Similarity=0.341 Sum_probs=98.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE-EEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCC-CC---CC
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQR-FKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDK-YF---ND 76 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~~k-~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~v~V~D~d~-~~---~d 76 (1016)
.|.|.|++|++||+++ +|||.|.+++++ .||+++.++.||.|+|+|.|.....-..|.|.||+.+. .+ ++
T Consensus 12 sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~~~ 86 (146)
T cd04013 12 SLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKDKS 86 (146)
T ss_pred EEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCccccccCC
Confidence 5899999999999864 799999999988 69999999999999999999876556789999986543 22 57
Q ss_pred ceeEEEEeecccccccCCCCCccEEEEccCCCCCC------CCCcceEEEEEEEEEec
Q 001764 77 DFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKS------KNKDCGEILLTISFSHN 128 (1016)
Q Consensus 77 ~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~------~~~~~G~I~l~l~~~~~ 128 (1016)
++||.+.||+.++.. +....+||+|.+..+.+ .....+.|++++.|.+.
T Consensus 87 ~~IG~V~Ip~~~l~~---~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 87 QLIGTVNIPVTDVSS---RQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred cEEEEEEEEHHHhcC---CCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 899999999999974 44578999999876543 12456899999999754
No 129
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.59 E-value=1.2e-14 Score=140.87 Aligned_cols=101 Identities=33% Similarity=0.499 Sum_probs=88.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeeeccCCCCCeeccEEEEEEeC---CCCEEEEEEEecCCC
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKY 73 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~-----~~k~kTkvi~~t~nP~WnE~f~f~v~~---~~~~L~v~V~D~d~~ 73 (1016)
+|.|+|++|+||+..+..+.+||||++.+. ..+++|++++++.||+|||+|.|.+.. ....|.|.|||++.+
T Consensus 17 ~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~ 96 (127)
T cd04030 17 KLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSF 96 (127)
T ss_pred EEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCcc
Confidence 699999999999999998999999999995 457999999999999999999999843 247899999999875
Q ss_pred --CCCceeEEEEeecccccccCCCCCccEEEEcc
Q 001764 74 --FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105 (1016)
Q Consensus 74 --~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~ 105 (1016)
+++++||++.++|.++... .....||.|.
T Consensus 97 ~~~~~~~iG~~~i~l~~l~~~---~~~~~W~~L~ 127 (127)
T cd04030 97 LSREKKLLGQVLIDLSDLDLS---KGFTQWYDLT 127 (127)
T ss_pred cCCCCceEEEEEEeccccccc---CCccceEECc
Confidence 6899999999999998543 2367899984
No 130
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.58 E-value=2.4e-14 Score=139.87 Aligned_cols=117 Identities=15% Similarity=0.328 Sum_probs=97.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCee-eeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCC---C
Q 001764 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFN---E 613 (1016)
Q Consensus 538 ~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~~-~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~---~ 613 (1016)
.|.|.|++|++||+++ ||||.|.+++.. .+|+++.++.||.|+|.|.|.... ....|.|.||+.+...+ +
T Consensus 12 sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~-~~~~l~v~v~k~~~~~~~~~~ 85 (146)
T cd04013 12 SLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLP-PVSVITVNLYRESDKKKKKDK 85 (146)
T ss_pred EEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCC-cccEEEEEEEEccCccccccC
Confidence 4999999999999875 799999999999 699999999999999999996433 35789999986553122 5
Q ss_pred CceeeEEEEEceecCCCCceeEEEECCcCCcC---------cccceEEEEEEEeec
Q 001764 614 ATSLGHAEINFVKSDISDLADVWIPLQGKLAQ---------ACQSKLHLRIFLNNT 660 (1016)
Q Consensus 614 dd~lG~~~i~l~~~~~~~~~~~w~~L~~~~~~---------~~~g~l~l~~~~~~~ 660 (1016)
+++||.+.|++.++..+...+.||+|.+..+. ...++|||++.|...
T Consensus 86 ~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 86 SQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred CcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 78999999999999988888999999864433 346799999998643
No 131
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.58 E-value=2.8e-14 Score=138.89 Aligned_cols=114 Identities=20% Similarity=0.271 Sum_probs=92.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------------eeeeeecCCCCCCCee-eEEEEEEeeCCCCCeEEEE
Q 001764 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNG-------------KSRTSSIKFQQCDPMW-NEIFEYDAMDEPPSMLDVE 603 (1016)
Q Consensus 538 ~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~-------------~~~~T~~~~~t~nP~W-nE~f~f~~~~~~~~~L~i~ 603 (1016)
+++|++++|+||+ ++..|++||||++.+.+ +.++|+++++++||.| ||.|.|.+. ..+.|.|+
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEE
Confidence 4789999999998 78899999999999842 3589999999999999 999999774 35689999
Q ss_pred EEEccCCCCC---CceeeEEEEEceecCCCC---ceeEEEECCcCCc-CcccceEEEEE
Q 001764 604 VYDFDGPFNE---ATSLGHAEINFVKSDISD---LADVWIPLQGKLA-QACQSKLHLRI 655 (1016)
Q Consensus 604 V~D~d~~~~~---dd~lG~~~i~l~~~~~~~---~~~~w~~L~~~~~-~~~~g~l~l~~ 655 (1016)
|||++. .++ +++||++.+++.++..+. ....|++|...+. ....|.|.|++
T Consensus 79 V~D~~~-~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFA-KSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEecCC-CCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 999875 333 789999999999975432 2577999986542 23377777765
No 132
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.57 E-value=9e-15 Score=140.87 Aligned_cols=89 Identities=22% Similarity=0.398 Sum_probs=81.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCee--eeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCCCCce
Q 001764 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKS--RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATS 616 (1016)
Q Consensus 539 L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~~--~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~~dd~ 616 (1016)
|+|+|++|++|+.+|..|.+||||++.+++.. .+|+++++++||.|||+|.|.+..+....|.|+|||+|. +++|++
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~-~~~dd~ 80 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDL-LGSDDL 80 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCC-CCCCce
Confidence 89999999999999999999999999999876 578888899999999999998765557789999999998 889999
Q ss_pred eeEEEEEceecC
Q 001764 617 LGHAEINFVKSD 628 (1016)
Q Consensus 617 lG~~~i~l~~~~ 628 (1016)
||++.+++.+..
T Consensus 81 iG~~~i~l~~~~ 92 (124)
T cd04037 81 IGETVIDLEDRF 92 (124)
T ss_pred eEEEEEeecccc
Confidence 999999998854
No 133
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.57 E-value=1.9e-14 Score=138.92 Aligned_cols=104 Identities=32% Similarity=0.565 Sum_probs=93.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccC-CCCCeeccEEEEEEeCC----CCEEEEEEEecCCCCCC
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRK-SLSPSWEEEFSFKVEDL----KDELVISVLDEDKYFND 76 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~~k~kTkvi~~-t~nP~WnE~f~f~v~~~----~~~L~v~V~D~d~~~~d 76 (1016)
+|.|+|++|++|+..+..+.+||||++.++++.++|+++++ +.||.|||+|.|.+... ...|.|+|||++.++++
T Consensus 2 ~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~d 81 (124)
T cd04049 2 TLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDD 81 (124)
T ss_pred eEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCCC
Confidence 68999999999999998899999999999999999999885 89999999999999655 57899999999998899
Q ss_pred ceeEEEEeecccccccCCCCCccEEEEccCCC
Q 001764 77 DFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (1016)
Q Consensus 77 ~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~ 108 (1016)
++||++.+++.++...+ ....|+.|.+..
T Consensus 82 ~~iG~~~i~l~~l~~~~---~~~~~~~l~p~~ 110 (124)
T cd04049 82 DFIGEATIHLKGLFEEG---VEPGTAELVPAK 110 (124)
T ss_pred CeEEEEEEEhHHhhhCC---CCcCceEeeccc
Confidence 99999999999997633 357899999854
No 134
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.57 E-value=9.4e-16 Score=165.00 Aligned_cols=102 Identities=39% Similarity=0.660 Sum_probs=91.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeeeccCCCCCeeccEEEEEEe--CCCCEEEEEEEecCCCC
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVE--DLKDELVISVLDEDKYF 74 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~-----~~k~kTkvi~~t~nP~WnE~f~f~v~--~~~~~L~v~V~D~d~~~ 74 (1016)
.|.|+|.+|+||.++|.+|.+||||++.+- ..+++|++++.++||+|||+|.|.+. +.++.|.|+|||||+-+
T Consensus 181 ~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrTs 260 (683)
T KOG0696|consen 181 VLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRTS 260 (683)
T ss_pred eEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccccc
Confidence 488999999999999999999999999983 35799999999999999999999994 45689999999999999
Q ss_pred CCceeEEEEeecccccccCCCCCccEEEEccCC
Q 001764 75 NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPK 107 (1016)
Q Consensus 75 ~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~ 107 (1016)
+++|+|...+.+++|...+ ...||.|...
T Consensus 261 RNDFMGslSFgisEl~K~p----~~GWyKlLsq 289 (683)
T KOG0696|consen 261 RNDFMGSLSFGISELQKAP----VDGWYKLLSQ 289 (683)
T ss_pred cccccceecccHHHHhhcc----hhhHHHHhhh
Confidence 9999999999999997643 5789999864
No 135
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.57 E-value=1.9e-14 Score=138.62 Aligned_cols=100 Identities=27% Similarity=0.466 Sum_probs=86.9
Q ss_pred EEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeC---CCCEEEEEEEecCC
Q 001764 2 KLVVRVIEARNIPAMD-QNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDK 72 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d-~~g~~dPyv~v~~~~-----~k~kTkvi~~t~nP~WnE~f~f~v~~---~~~~L~v~V~D~d~ 72 (1016)
+|.|+|++|+||+..+ ..+.+||||++.+.+ .+.+|++++++.||+|||+|.|.+.. ....|.|.|||++.
T Consensus 15 ~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~ 94 (123)
T cd08521 15 SLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDR 94 (123)
T ss_pred EEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCC
Confidence 6899999999999998 778999999999842 46899999999999999999999854 25689999999999
Q ss_pred CCCCceeEEEEeecccccccCCCCCccEEEEc
Q 001764 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSL 104 (1016)
Q Consensus 73 ~~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L 104 (1016)
++++++||++.++|.++... .....||+|
T Consensus 95 ~~~~~~iG~~~i~l~~l~~~---~~~~~w~~l 123 (123)
T cd08521 95 FGRNTFLGEVEIPLDSWDLD---SQQSEWYPL 123 (123)
T ss_pred CcCCceeeEEEEeccccccc---CCCccEEEC
Confidence 89999999999999999532 235789987
No 136
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.57 E-value=4.2e-14 Score=136.42 Aligned_cols=119 Identities=24% Similarity=0.391 Sum_probs=98.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCCCCCceeE
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVG 80 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~~-k~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~v~V~D~d~~~~d~~lG 80 (1016)
+|.|+|.+|+ |...+..+.+||||.+.++++ ..+|+++++++||+|||+|.|.+. ....|.|+|||++..+++++||
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~~~~~iG 80 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLKADVLLG 80 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEEEEEeCCCCCCCcEEE
Confidence 6899999998 655666889999999999887 899999999999999999999985 4578999999999988999999
Q ss_pred EEEeecccccccCCCCCcc--EEEEccCCCCCCCCCcceEEEEEE
Q 001764 81 FLKIPVSRVFDADNKSLPT--AWHSLQPKNKKSKNKDCGEILLTI 123 (1016)
Q Consensus 81 ~~~v~l~~l~~~~~~~~~~--~w~~L~~~~~~~~~~~~G~I~l~l 123 (1016)
++.++|.++...+.+.... .|+.|...+. ......|+|.+.+
T Consensus 81 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~G~~~~~~ 124 (125)
T cd04021 81 EASLDLSDILKNHNGKLENVKLTLNLSSENK-GSSVKVGELTVIL 124 (125)
T ss_pred EEEEEHHHhHhhcCCCccceEEEEEEEccCC-CcceeeeeEEEEe
Confidence 9999999998655544433 5888875441 1346789998865
No 137
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.57 E-value=4.8e-14 Score=139.23 Aligned_cols=119 Identities=14% Similarity=0.270 Sum_probs=97.0
Q ss_pred EEEEEEEeec--CCCCCCCCCCCcEEEEEE-----CCeEEEeeeccCCCCCeeccEEEEEEeCC---------CCEEEEE
Q 001764 3 LVVRVIEARN--IPAMDQNGYSDPYVRLQL-----GRQRFKTKVVRKSLSPSWEEEFSFKVEDL---------KDELVIS 66 (1016)
Q Consensus 3 L~V~V~~Ar~--L~~~d~~g~~dPyv~v~~-----~~~k~kTkvi~~t~nP~WnE~f~f~v~~~---------~~~L~v~ 66 (1016)
..++|..|++ |+..+.++.+||||++.+ +.++.||+++++|+||+|||+|.|.+... ...|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 4577777777 778887889999999987 24689999999999999999999999543 3579999
Q ss_pred EEecCCC-CCCceeEEEEeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEEEEEec
Q 001764 67 VLDEDKY-FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (1016)
Q Consensus 67 V~D~d~~-~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~~ 128 (1016)
|||++.+ .+|++||++.++|..+... .....|++|.... ...+|+|++.+....+
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~---~~~~~~~~L~~~~----k~~Gg~l~v~ir~r~p 139 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETK---CEIHESVDLMDGR----KATGGKLEVKVRLREP 139 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEccccccc---CcceEEEEhhhCC----CCcCCEEEEEEEecCC
Confidence 9999986 4799999999999998542 2345699988533 2578999999998643
No 138
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.56 E-value=2.5e-14 Score=136.84 Aligned_cols=103 Identities=21% Similarity=0.348 Sum_probs=92.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCCCCCceeE
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-QRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVG 80 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~-~k~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~v~V~D~d~~~~d~~lG 80 (1016)
.|+|+|++|++|+..+..+.+||||++.+++ ...+|++++++.||+|||.|.|.+......|.|+|||++.++++++||
T Consensus 2 ~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~IG 81 (120)
T cd04045 2 VLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSLG 81 (120)
T ss_pred eEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCeee
Confidence 4899999999999999889999999999976 468999999999999999999999777789999999999999999999
Q ss_pred EEEeecccccccCCCCCccEEEEccCCC
Q 001764 81 FLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (1016)
Q Consensus 81 ~~~v~l~~l~~~~~~~~~~~w~~L~~~~ 108 (1016)
++.+++.++... ....||.|.+.+
T Consensus 82 ~~~~~l~~l~~~----~~~~~~~~~~~~ 105 (120)
T cd04045 82 SVEINVSDLIKK----NEDGKYVEYDDE 105 (120)
T ss_pred EEEEeHHHhhCC----CCCceEEecCCC
Confidence 999999999764 247799998754
No 139
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.56 E-value=4e-14 Score=135.08 Aligned_cols=112 Identities=28% Similarity=0.452 Sum_probs=89.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeE-EEeeeccCCCCCeeccEEEEEEeC---CCCEEEEEEEecCCCCCCce
Q 001764 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQR-FKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKYFNDDF 78 (1016)
Q Consensus 3 L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~~k-~kTkvi~~t~nP~WnE~f~f~v~~---~~~~L~v~V~D~d~~~~d~~ 78 (1016)
|+|+|++|++|+.. +.+||||.+.+++++ .+|+++++ .||.|||+|.|.+.. ....|.|.+||.+...++.+
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~ 77 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV 77 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence 78999999999976 789999999998754 79999999 999999999999965 33578888999887666777
Q ss_pred eEEEEeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEEEE
Q 001764 79 VGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (1016)
Q Consensus 79 lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~ 125 (1016)
+|.+.+..... +.....||+|.++... ....|+|+|.+.|
T Consensus 78 ~g~v~l~~~~~-----~~~~~~w~~L~~~~~~--~~~~G~l~l~~~~ 117 (117)
T cd08383 78 IGKVALSKLDL-----GQGKDEWFPLTPVDPD--SEVQGSVRLRARY 117 (117)
T ss_pred EEEEEecCcCC-----CCcceeEEECccCCCC--CCcCceEEEEEEC
Confidence 77765544332 2335789999986542 3568999999876
No 140
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.56 E-value=1.7e-14 Score=140.94 Aligned_cols=94 Identities=33% Similarity=0.511 Sum_probs=83.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------CeEEEeeeccCCCCCeeccEEEEEEeC-----CCCEEEEEEEe
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG-------RQRFKTKVVRKSLSPSWEEEFSFKVED-----LKDELVISVLD 69 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~-------~~k~kTkvi~~t~nP~WnE~f~f~v~~-----~~~~L~v~V~D 69 (1016)
+|.|+|++|++|+..+.+|.+||||+|.+. ..+++|+++++++||+|||+|.|.+.. ....|.|+|||
T Consensus 17 ~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d 96 (133)
T cd04009 17 SLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKD 96 (133)
T ss_pred EEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEe
Confidence 689999999999999988999999999985 347999999999999999999999853 24689999999
Q ss_pred cCCCCCCceeEEEEeecccccccCCC
Q 001764 70 EDKYFNDDFVGFLKIPVSRVFDADNK 95 (1016)
Q Consensus 70 ~d~~~~d~~lG~~~v~l~~l~~~~~~ 95 (1016)
++.++++++||++.++|.++..-++.
T Consensus 97 ~d~~~~d~~iG~~~i~l~~l~~~~~~ 122 (133)
T cd04009 97 YDLLGSNDFEGEAFLPLNDIPGVEDT 122 (133)
T ss_pred cCCCCCCcEeEEEEEeHHHCCccccc
Confidence 99998899999999999999754443
No 141
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.56 E-value=2.3e-14 Score=140.96 Aligned_cols=90 Identities=38% Similarity=0.639 Sum_probs=84.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCCCCCceeEE
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGF 81 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~~k~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~v~V~D~d~~~~d~~lG~ 81 (1016)
.|+|+|++|+||+..+. +.+||||++.+++++.+|++++++.||+|||+|.|.+.+....|.|+|||++.+++|++||+
T Consensus 3 ~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG~ 81 (145)
T cd04038 3 LLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMGE 81 (145)
T ss_pred EEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEEE
Confidence 58999999999999887 88999999999999999999999999999999999998878899999999999999999999
Q ss_pred EEeeccccccc
Q 001764 82 LKIPVSRVFDA 92 (1016)
Q Consensus 82 ~~v~l~~l~~~ 92 (1016)
+.+++.++...
T Consensus 82 a~i~l~~l~~~ 92 (145)
T cd04038 82 AEIDLEPLVEA 92 (145)
T ss_pred EEEEHHHhhhh
Confidence 99999998753
No 142
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.56 E-value=2.1e-14 Score=140.56 Aligned_cols=102 Identities=34% Similarity=0.587 Sum_probs=90.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC----CeEEEeeeccCCCCCeeccEEEEEEeCC----------------CCE
Q 001764 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLG----RQRFKTKVVRKSLSPSWEEEFSFKVEDL----------------KDE 62 (1016)
Q Consensus 3 L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~----~~k~kTkvi~~t~nP~WnE~f~f~v~~~----------------~~~ 62 (1016)
|+|+|++|++|+.+ ..|.+||||++.++ ..+++|++++++.||.|||+|.|.+... ...
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 67999999999988 78899999999998 6789999999999999999999998543 468
Q ss_pred EEEEEEecCCCCCCceeEEEEeecccccccCCCCCccEEEEccCCC
Q 001764 63 LVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (1016)
Q Consensus 63 L~v~V~D~d~~~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~ 108 (1016)
|.|+|||++.+++++|||++.+++.++... .....||+|.++.
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~---~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQA---GSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCC---CcccceEecCCcC
Confidence 999999999988999999999999998632 2357899999875
No 143
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.56 E-value=3.8e-14 Score=136.72 Aligned_cols=114 Identities=20% Similarity=0.333 Sum_probs=93.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCCCCce
Q 001764 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGK-SRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATS 616 (1016)
Q Consensus 538 ~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~-~~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~~dd~ 616 (1016)
.|+|+|++|+ |...+..+.+||||++.++++ .++|++++++.||.|||.|.|.+. ..+.|.|+|||++. .+.|++
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~--~~~~l~~~V~d~~~-~~~~~~ 78 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT--PQSTLEFKVWSHHT-LKADVL 78 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC--CCCEEEEEEEeCCC-CCCCcE
Confidence 4999999999 655666889999999999988 699999999999999999999864 35789999999999 889999
Q ss_pred eeEEEEEceecCCCCc-----eeEEEECCcCC--cCcccceEEEEE
Q 001764 617 LGHAEINFVKSDISDL-----ADVWIPLQGKL--AQACQSKLHLRI 655 (1016)
Q Consensus 617 lG~~~i~l~~~~~~~~-----~~~w~~L~~~~--~~~~~g~l~l~~ 655 (1016)
||++.++|.++..... ...|++|...+ .....|.|++++
T Consensus 79 iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 79 LGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 9999999999654322 23588887433 224478887765
No 144
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.55 E-value=2.2e-14 Score=135.43 Aligned_cols=99 Identities=25% Similarity=0.416 Sum_probs=85.4
Q ss_pred CCCCCCcEEEEEECCee-eeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCCCCceeeEEEEEceecCC-CC
Q 001764 554 SSGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDI-SD 631 (1016)
Q Consensus 554 ~~g~sDPyv~v~~~~~~-~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~~dd~lG~~~i~l~~~~~-~~ 631 (1016)
.+|.+||||+|.++++. ++|+++.++.||.|||.|.|.+.+...+.|.|.|||++. + +|++||.+.++|+++.. ..
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~-~-~d~~iG~~~v~L~~l~~~~~ 86 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRD-R-HDPVLGSVSISLNDLIDATS 86 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCC-C-CCCeEEEEEecHHHHHhhhh
Confidence 47899999999998864 899999999999999999998765556789999999998 7 89999999999999743 44
Q ss_pred ceeEEEECCcCCcCcccceEEEEEEEe
Q 001764 632 LADVWIPLQGKLAQACQSKLHLRIFLN 658 (1016)
Q Consensus 632 ~~~~w~~L~~~~~~~~~g~l~l~~~~~ 658 (1016)
..+.||+|.+ ..+|+|++++.|.
T Consensus 87 ~~~~w~~L~~----~~~G~i~~~~~~~ 109 (111)
T cd04052 87 VGQQWFPLSG----NGQGRIRISALWK 109 (111)
T ss_pred ccceeEECCC----CCCCEEEEEEEEe
Confidence 5689999985 2469999999885
No 145
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.55 E-value=6.6e-15 Score=143.92 Aligned_cols=105 Identities=24% Similarity=0.385 Sum_probs=89.0
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeecCCCCCCCeeeEEEEEEeeCC--CCCeEEEEEEEc
Q 001764 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNG-----KSRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDF 607 (1016)
Q Consensus 535 ~~~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~~~~~--~~~~L~i~V~D~ 607 (1016)
..+.|.|+|++|+||+.+|..|.+||||++.+.+ ..++|+++++++||.|||+|.|.+..+ ....|.|+|||+
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~ 90 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDK 90 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeC
Confidence 4567999999999999999999999999999853 248999999999999999999987543 346899999999
Q ss_pred cCCCCCCceeeEEEEEceecCCCCceeEEEECCcC
Q 001764 608 DGPFNEATSLGHAEINFVKSDISDLADVWIPLQGK 642 (1016)
Q Consensus 608 d~~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~~~ 642 (1016)
|. .+++++||++.+++.. .+.....|+++...
T Consensus 91 d~-~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~ 122 (133)
T cd08384 91 DI-GKSNDYIGGLQLGINA--KGERLRHWLDCLKN 122 (133)
T ss_pred CC-CCCccEEEEEEEecCC--CCchHHHHHHHHhC
Confidence 98 7889999999999986 33455789888543
No 146
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.55 E-value=3.1e-14 Score=138.79 Aligned_cols=101 Identities=21% Similarity=0.249 Sum_probs=83.3
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC--e---eeeeecCCCCCCCeeeEEEEEEeeCC--CCCeEEEEEEEccC
Q 001764 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNG--K---SRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDFDG 609 (1016)
Q Consensus 537 ~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~--~---~~~T~~~~~t~nP~WnE~f~f~~~~~--~~~~L~i~V~D~d~ 609 (1016)
..|.|+|++|+||+.+|..|.+||||++.+.. + +++|+++++++||+|||+|.|.+..+ ....|.|+|||+|.
T Consensus 15 ~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~ 94 (136)
T cd08406 15 ERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTE 94 (136)
T ss_pred CEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCC
Confidence 45999999999999999999999999999832 2 36899999999999999999987432 35679999999998
Q ss_pred CCCCCceeeEEEEEceecCCCCceeEEEECC
Q 001764 610 PFNEATSLGHAEINFVKSDISDLADVWIPLQ 640 (1016)
Q Consensus 610 ~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~ 640 (1016)
++++++||++.|.... .+...+.|..+.
T Consensus 95 -~~~~~~iG~v~lg~~~--~g~~~~hW~~ml 122 (136)
T cd08406 95 -DGKTPNVGHVIIGPAA--SGMGLSHWNQML 122 (136)
T ss_pred -CCCCCeeEEEEECCCC--CChhHHHHHHHH
Confidence 8999999999997654 334445565554
No 147
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.55 E-value=4.2e-14 Score=136.23 Aligned_cols=102 Identities=30% Similarity=0.554 Sum_probs=88.4
Q ss_pred EEEEEEEEeecCCCCC-CCCCCCcEEEEEEC---CeEEEeeeccCCCCCeeccEEEEEEeCC---CCEEEEEEEecCCCC
Q 001764 2 KLVVRVIEARNIPAMD-QNGYSDPYVRLQLG---RQRFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDEDKYF 74 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d-~~g~~dPyv~v~~~---~~k~kTkvi~~t~nP~WnE~f~f~v~~~---~~~L~v~V~D~d~~~ 74 (1016)
+|.|+|++|+||+..+ ..+.+||||++.+. ....+|+++++++||+|||.|.|.+... ...|.|.|||++..+
T Consensus 15 ~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~ 94 (123)
T cd08390 15 QLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRFS 94 (123)
T ss_pred EEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCcCC
Confidence 6899999999999998 68899999999984 3468899999999999999999998542 468999999999988
Q ss_pred CCceeEEEEeecccccccCCCCCccEEEEccC
Q 001764 75 NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (1016)
Q Consensus 75 ~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~ 106 (1016)
++++||++.++|.++.... ....|++|.+
T Consensus 95 ~~~~iG~~~i~L~~l~~~~---~~~~w~~L~~ 123 (123)
T cd08390 95 RHCIIGHVLFPLKDLDLVK---GGVVWRDLEP 123 (123)
T ss_pred CCcEEEEEEEeccceecCC---CceEEEeCCC
Confidence 8999999999999986532 3468999864
No 148
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.54 E-value=7.4e-14 Score=133.24 Aligned_cols=112 Identities=21% Similarity=0.339 Sum_probs=88.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCee-eeeecCCCCCCCeeeEEEEEEeeCC--CCCeEEEEEEEccCCCCCCc
Q 001764 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDFDGPFNEAT 615 (1016)
Q Consensus 539 L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~~-~~T~~~~~t~nP~WnE~f~f~~~~~--~~~~L~i~V~D~d~~~~~dd 615 (1016)
|+|+|++|+||+.+ |.+||||++.+++++ ++|+++++ .||.|||+|.|.+... ....|.|.+||.+. .+++.
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~-~~~~~ 76 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRS-KDRDI 76 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEeccc-CCCee
Confidence 78999999999987 799999999999865 79999988 9999999999987543 23568888888876 66666
Q ss_pred eeeEEEEEceecCCCCceeEEEECCcCCc-CcccceEEEEEEE
Q 001764 616 SLGHAEINFVKSDISDLADVWIPLQGKLA-QACQSKLHLRIFL 657 (1016)
Q Consensus 616 ~lG~~~i~l~~~~~~~~~~~w~~L~~~~~-~~~~g~l~l~~~~ 657 (1016)
++|.+. +..+..++..+.|++|.+... ....|+|+|++.|
T Consensus 77 ~~g~v~--l~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 77 VIGKVA--LSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEEE--ecCcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 666655 455555667799999986533 3458999998864
No 149
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.54 E-value=2.8e-14 Score=136.90 Aligned_cols=88 Identities=26% Similarity=0.416 Sum_probs=79.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEe--CCCCEEEEEEEecCCCCCCcee
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVE--DLKDELVISVLDEDKYFNDDFV 79 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~~k~kTkvi~~t~nP~WnE~f~f~v~--~~~~~L~v~V~D~d~~~~d~~l 79 (1016)
+|+|+|++|++|+. +..+.+||||+|.+++++++|+++++++||+|||+|.|... .....|.|+|||++.+++|++|
T Consensus 29 ~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd~I 107 (127)
T cd04032 29 TLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDDLL 107 (127)
T ss_pred EEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCCee
Confidence 69999999999984 66788999999999999999999999999999999999853 3468999999999999999999
Q ss_pred EEEEeeccccc
Q 001764 80 GFLKIPVSRVF 90 (1016)
Q Consensus 80 G~~~v~l~~l~ 90 (1016)
|++.++|....
T Consensus 108 G~~~i~l~~~~ 118 (127)
T cd04032 108 GTCSVVPEAGV 118 (127)
T ss_pred EEEEEEecCCc
Confidence 99999998764
No 150
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.54 E-value=8.2e-14 Score=135.17 Aligned_cols=115 Identities=25% Similarity=0.375 Sum_probs=96.2
Q ss_pred EEEEEEEEeecCCCCC--CCCCCCcEEEEEEC------CeeeeeecCCCCC-CCeeeEEEEEEeeCCCCCeEEEEEEEcc
Q 001764 538 LLTVALIKGDNLAAVD--SSGFCDPYVVFTCN------GKSRTSSIKFQQC-DPMWNEIFEYDAMDEPPSMLDVEVYDFD 608 (1016)
Q Consensus 538 ~L~V~v~~A~~L~~~d--~~g~sDPyv~v~~~------~~~~~T~~~~~t~-nP~WnE~f~f~~~~~~~~~L~i~V~D~d 608 (1016)
.|+|+|++|+||+.++ ..+.+||||++++. ..+++|+++.++. ||.|||+|.|.+.......|.|+|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 4999999999999988 58899999999983 3458898887776 9999999999876554567999999999
Q ss_pred CCCCCCceeeEEEEEceecCCCCceeEEEECCcCCcC-cccceEEEEEEE
Q 001764 609 GPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQ-ACQSKLHLRIFL 657 (1016)
Q Consensus 609 ~~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~~~~~~-~~~g~l~l~~~~ 657 (1016)
. . ++++||++.+++.++..+ ..|++|..+.+. ...|.|.+++.+
T Consensus 83 ~-~-~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 83 S-G-DDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred C-C-CCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCCcceeEEEEEEE
Confidence 8 6 889999999999998543 579999865544 457889888875
No 151
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.53 E-value=4.1e-14 Score=137.88 Aligned_cols=104 Identities=25% Similarity=0.420 Sum_probs=91.6
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeecCCCCCCCeeeEEEEEEeeCC-CCCeEEEEEEEccCC
Q 001764 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNG-----KSRTSSIKFQQCDPMWNEIFEYDAMDE-PPSMLDVEVYDFDGP 610 (1016)
Q Consensus 537 ~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~~~~~-~~~~L~i~V~D~d~~ 610 (1016)
+.|+|+|++|+||+..+..|.+||||.+.+.+ ..++|+++.++.||.|||+|.|.+... ....|.|+|||++.
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~- 91 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDR- 91 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCC-
Confidence 56999999999999999999999999999863 458999999999999999999987542 45689999999998
Q ss_pred CCCCceeeEEEEEceecCCCCceeEEEECCcC
Q 001764 611 FNEATSLGHAEINFVKSDISDLADVWIPLQGK 642 (1016)
Q Consensus 611 ~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~~~ 642 (1016)
.+++++||++.++++++... ..+.||+|...
T Consensus 92 ~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~ 122 (131)
T cd04026 92 TTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQ 122 (131)
T ss_pred CCCcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence 78899999999999998754 67899999754
No 152
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.53 E-value=4.7e-14 Score=142.02 Aligned_cols=102 Identities=30% Similarity=0.493 Sum_probs=87.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeeeccCCCCCeeccEEEEEEeC----CCCEEEEEEEecCC
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVED----LKDELVISVLDEDK 72 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~-----~~k~kTkvi~~t~nP~WnE~f~f~v~~----~~~~L~v~V~D~d~ 72 (1016)
+|.|+|++|+||++.+..+.+||||++.+. ..+++|+++++++||+|||+|.|.+.. ....|.|+|||++.
T Consensus 28 ~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~ 107 (162)
T cd04020 28 ELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDK 107 (162)
T ss_pred eEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCC
Confidence 599999999999999988999999999883 357999999999999999999998622 23589999999999
Q ss_pred CCCCceeEEEEeecccccccCCCCCccEEEEccC
Q 001764 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (1016)
Q Consensus 73 ~~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~ 106 (1016)
++++++||++.+++.++.... ....|+.|..
T Consensus 108 ~~~d~~lG~v~i~l~~~~~~~---~~~~w~~~~~ 138 (162)
T cd04020 108 LSSNDFLGGVRLGLGTGKSYG---QAVDWMDSTG 138 (162)
T ss_pred CCCCceEEEEEEeCCccccCC---CccccccCCh
Confidence 999999999999999985322 3577888864
No 153
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.53 E-value=8.2e-14 Score=132.51 Aligned_cols=112 Identities=34% Similarity=0.541 Sum_probs=95.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEeeeccCCCCCeeccEEEEEEeC-CCCEEEEEEEecCCCCCCceeE
Q 001764 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGR-QRFKTKVVRKSLSPSWEEEFSFKVED-LKDELVISVLDEDKYFNDDFVG 80 (1016)
Q Consensus 3 L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~-~k~kTkvi~~t~nP~WnE~f~f~v~~-~~~~L~v~V~D~d~~~~d~~lG 80 (1016)
|+|+|++|++|+..+..+.+||||++.+++ ..++|+++.++.||+|||+|.|.+.. ....|.|+|||++..+++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 579999999999999888999999999975 44899999999999999999999965 4678999999999988999999
Q ss_pred EEEeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEE
Q 001764 81 FLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILL 121 (1016)
Q Consensus 81 ~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l 121 (1016)
++.+++.++... .....|++|.++++ ...|.+.|
T Consensus 81 ~~~~~l~~l~~~---~~~~~~~~L~~~g~----~~~~~~~~ 114 (115)
T cd04040 81 SAYIDLSDLEPE---ETTELTLPLDGQGG----GKLGAVFL 114 (115)
T ss_pred EEEEEHHHcCCC---CcEEEEEECcCCCC----ccCceEEc
Confidence 999999998642 33678999987654 34566543
No 154
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.53 E-value=1.3e-14 Score=142.42 Aligned_cols=104 Identities=24% Similarity=0.343 Sum_probs=88.2
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC--e---eeeeecCCCCCCCeeeEEEEEEeeCC--CCCeEEEEEEEcc
Q 001764 536 GWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNG--K---SRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDFD 608 (1016)
Q Consensus 536 ~~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~--~---~~~T~~~~~t~nP~WnE~f~f~~~~~--~~~~L~i~V~D~d 608 (1016)
...|.|+|++|+||+.+|..|.+||||++.+.. + +++|+++++++||.|||+|.|.+... ....|.|+|||+|
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d 93 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSD 93 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECC
Confidence 446999999999999999999999999999842 2 37899999999999999999987432 3457999999999
Q ss_pred CCCCCCceeeEEEEEceecCCCCceeEEEECCcC
Q 001764 609 GPFNEATSLGHAEINFVKSDISDLADVWIPLQGK 642 (1016)
Q Consensus 609 ~~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~~~ 642 (1016)
. ++++++||++.+++.. .+.....|++|...
T Consensus 94 ~-~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~ 124 (136)
T cd08404 94 R-VTKNEVIGRLVLGPKA--SGSGGHHWKEVCNP 124 (136)
T ss_pred C-CCCCccEEEEEECCcC--CCchHHHHHHHHhC
Confidence 9 8999999999999988 35556889888643
No 155
>PLN03008 Phospholipase D delta
Probab=99.53 E-value=6.7e-14 Score=166.32 Aligned_cols=122 Identities=20% Similarity=0.358 Sum_probs=102.8
Q ss_pred eEEEEEEEEeecCCCCCC------------------------------------------CCCCCcEEEEEECCee-eee
Q 001764 537 WLLTVALIKGDNLAAVDS------------------------------------------SGFCDPYVVFTCNGKS-RTS 573 (1016)
Q Consensus 537 ~~L~V~v~~A~~L~~~d~------------------------------------------~g~sDPyv~v~~~~~~-~~T 573 (1016)
|.|.|+|++|++||.||. .+++||||+|.+++++ .+|
T Consensus 14 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~RT 93 (868)
T PLN03008 14 GDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLART 93 (868)
T ss_pred cccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceeeE
Confidence 469999999999986432 3478999999998875 699
Q ss_pred ecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCCCCceeeEEEEEceecCCCCceeEEEECCcCCcCcc--cceE
Q 001764 574 SIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQAC--QSKL 651 (1016)
Q Consensus 574 ~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~~~~~~~~--~g~l 651 (1016)
+++++++||+|||+|.|.+.. +...|.|+|||+|. ++ +|+||++.|++.++..+...+.|++|.+..++.. .++|
T Consensus 94 rVi~n~~NPvWNE~F~f~vah-~~s~L~f~VkD~D~-~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~kl 170 (868)
T PLN03008 94 RVLKNSQEPLWDEKFNISIAH-PFAYLEFQVKDDDV-FG-AQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETAI 170 (868)
T ss_pred EeCCCCCCCCcceeEEEEecC-CCceEEEEEEcCCc-cC-CceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCCcEE
Confidence 999999999999999997654 46799999999998 76 5799999999999999988999999986544433 6799
Q ss_pred EEEEEEeecC
Q 001764 652 HLRIFLNNTK 661 (1016)
Q Consensus 652 ~l~~~~~~~~ 661 (1016)
|+++.|....
T Consensus 171 ~v~lqf~pv~ 180 (868)
T PLN03008 171 FIDMKFTPFD 180 (868)
T ss_pred EEEEEEEEcc
Confidence 9999986544
No 156
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.53 E-value=3.2e-14 Score=138.52 Aligned_cols=101 Identities=21% Similarity=0.300 Sum_probs=81.6
Q ss_pred CeEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCe-----eeeeecCCCCCCCeeeEEEEEEeeCC--CCCeEEEEEEE
Q 001764 536 GWLLTVALIKGDNLAAVDS--SGFCDPYVVFTCNGK-----SRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYD 606 (1016)
Q Consensus 536 ~~~L~V~v~~A~~L~~~d~--~g~sDPyv~v~~~~~-----~~~T~~~~~t~nP~WnE~f~f~~~~~--~~~~L~i~V~D 606 (1016)
.+.|.|+|++|+||+.+|. .+.+||||++.+... +++|+++++++||+|||.|.|.+..+ ....|.|+|||
T Consensus 14 ~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d 93 (138)
T cd08407 14 ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLN 93 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEe
Confidence 3459999999999999983 356999999997542 27899999999999999999987543 24579999999
Q ss_pred ccCCCCCCceeeEEEEEceecCCCCceeEEEEC
Q 001764 607 FDGPFNEATSLGHAEINFVKSDISDLADVWIPL 639 (1016)
Q Consensus 607 ~d~~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L 639 (1016)
+|. ++++|+||++.+.+.. .+.....|..+
T Consensus 94 ~d~-~~~~d~iG~v~lg~~~--~g~~~~hW~~m 123 (138)
T cd08407 94 QDS-PGQSLPLGRCSLGLHT--SGTERQHWEEM 123 (138)
T ss_pred CCC-CcCcceeceEEecCcC--CCcHHHHHHHH
Confidence 999 8999999999999865 23333445444
No 157
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.53 E-value=1.7e-13 Score=132.96 Aligned_cols=116 Identities=27% Similarity=0.507 Sum_probs=97.5
Q ss_pred CEEEEEEEEeecCCCCC--CCCCCCcEEEEEE------CCeEEEeeeccCCC-CCeeccEEEEEEeCCC-CEEEEEEEec
Q 001764 1 MKLVVRVIEARNIPAMD--QNGYSDPYVRLQL------GRQRFKTKVVRKSL-SPSWEEEFSFKVEDLK-DELVISVLDE 70 (1016)
Q Consensus 1 m~L~V~V~~Ar~L~~~d--~~g~~dPyv~v~~------~~~k~kTkvi~~t~-nP~WnE~f~f~v~~~~-~~L~v~V~D~ 70 (1016)
|+|+|+|++|+||+..+ ..+.+||||++++ ...+.+|+++.++. ||.|||+|.|.+.... ..|.++|||+
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 78999999999999888 5788999999999 34568999988775 9999999999986443 5799999999
Q ss_pred CCCCCCceeEEEEeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEEEE
Q 001764 71 DKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (1016)
Q Consensus 71 d~~~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~ 125 (1016)
+.. ++++||++.+++.++.. +..|++|....+. ....|.|.+.+.+
T Consensus 82 ~~~-~~~~iG~~~~~l~~l~~------g~~~~~l~~~~~~--~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSG-DDDFLGQACLPLDSLRQ------GYRHVPLLDSKGE--PLELSTLFVHIDI 127 (128)
T ss_pred CCC-CCcEeEEEEEEhHHhcC------ceEEEEecCCCCC--CCcceeEEEEEEE
Confidence 987 89999999999999843 3578999876543 2456999998875
No 158
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.53 E-value=3.5e-14 Score=136.13 Aligned_cols=98 Identities=26% Similarity=0.291 Sum_probs=86.5
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCee-------eeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccC---CCC
Q 001764 543 LIKGDNLAAVDSSGFCDPYVVFTCNGKS-------RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDG---PFN 612 (1016)
Q Consensus 543 v~~A~~L~~~d~~g~sDPyv~v~~~~~~-------~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~---~~~ 612 (1016)
.++|++|+.++..|.+||||++.+.+.. ++|+++++++||.|||+|.|.+..+..+.|.|+|||+|. .++
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 4889999999999999999999987653 899999999999999999998755556789999999994 147
Q ss_pred CCceeeEEEEEceecCCCCceeEEEECC
Q 001764 613 EATSLGHAEINFVKSDISDLADVWIPLQ 640 (1016)
Q Consensus 613 ~dd~lG~~~i~l~~~~~~~~~~~w~~L~ 640 (1016)
++++||++.+++.++..+.....|++|.
T Consensus 86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred CCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 8999999999999998877788999993
No 159
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.52 E-value=5.4e-14 Score=139.18 Aligned_cols=96 Identities=40% Similarity=0.665 Sum_probs=83.9
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----------------------------EEEeeeccCCCCCeeccE
Q 001764 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ-----------------------------RFKTKVVRKSLSPSWEEE 51 (1016)
Q Consensus 1 m~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~~-----------------------------k~kTkvi~~t~nP~WnE~ 51 (1016)
+.|.|+|++|+||+++|.+|.+||||++.++.. .++|+++++++||+|||+
T Consensus 28 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE~ 107 (153)
T cd08676 28 FVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNET 107 (153)
T ss_pred EEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCccccE
Confidence 479999999999999999999999999998531 378999999999999999
Q ss_pred EEEEEeC-CCCEEEEEEEecCCCCCCceeEEEEeecccccccCCCCCccEEEEc
Q 001764 52 FSFKVED-LKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSL 104 (1016)
Q Consensus 52 f~f~v~~-~~~~L~v~V~D~d~~~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L 104 (1016)
|.|.+.. ....|.|+|||++ ++|||++.+++.++.. . ....||+|
T Consensus 108 F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-~---~~d~W~~L 153 (153)
T cd08676 108 FRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-C---GLDSWFKL 153 (153)
T ss_pred EEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-C---CCCCeEeC
Confidence 9999965 3578999999998 8899999999999972 1 25889987
No 160
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.52 E-value=6.1e-14 Score=136.67 Aligned_cols=101 Identities=24% Similarity=0.322 Sum_probs=84.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeC---CCCEEEEEEEecCCC
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKY 73 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~-----~k~kTkvi~~t~nP~WnE~f~f~v~~---~~~~L~v~V~D~d~~ 73 (1016)
+|.|+|++|+||+..+..|.+||||++.+.. .+++|+++++++||+|||+|.|.++. .+..|.|+|||++.+
T Consensus 16 ~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~~ 95 (136)
T cd08406 16 RLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTED 95 (136)
T ss_pred EEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCCC
Confidence 6999999999999999889999999999942 25789999999999999999999953 357899999999999
Q ss_pred CCCceeEEEEeecccccccCCCCCccEEEEccCC
Q 001764 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPK 107 (1016)
Q Consensus 74 ~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~ 107 (1016)
+++++||++.++.... +.....|..+...
T Consensus 96 ~~~~~iG~v~lg~~~~-----g~~~~hW~~ml~~ 124 (136)
T cd08406 96 GKTPNVGHVIIGPAAS-----GMGLSHWNQMLAS 124 (136)
T ss_pred CCCCeeEEEEECCCCC-----ChhHHHHHHHHHC
Confidence 9999999999976542 1224556666543
No 161
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.52 E-value=5.5e-14 Score=137.27 Aligned_cols=92 Identities=24% Similarity=0.327 Sum_probs=81.5
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeeeecCCCCCCCeeeEEEEEEeeCC----CCCeEEEEEE
Q 001764 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNG-------KSRTSSIKFQQCDPMWNEIFEYDAMDE----PPSMLDVEVY 605 (1016)
Q Consensus 537 ~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~-------~~~~T~~~~~t~nP~WnE~f~f~~~~~----~~~~L~i~V~ 605 (1016)
..|+|+|++|++|+.++..|.+||||+|.+.+ ..++|+++++++||+|||+|.|.+... ....|.|+||
T Consensus 16 ~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~ 95 (133)
T cd04009 16 QSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVK 95 (133)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEE
Confidence 45999999999999999999999999999852 358999999999999999999987542 3568999999
Q ss_pred EccCCCCCCceeeEEEEEceecCC
Q 001764 606 DFDGPFNEATSLGHAEINFVKSDI 629 (1016)
Q Consensus 606 D~d~~~~~dd~lG~~~i~l~~~~~ 629 (1016)
|+|. ++++++||++.++|.++..
T Consensus 96 d~d~-~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 96 DYDL-LGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred ecCC-CCCCcEeEEEEEeHHHCCc
Confidence 9999 8889999999999999763
No 162
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.51 E-value=7.7e-14 Score=136.88 Aligned_cols=104 Identities=26% Similarity=0.369 Sum_probs=86.1
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--Ce---eeeeecCCCCCCCeeeEEEEEEeeCC--CCCeEEEEEEEc
Q 001764 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN--GK---SRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDF 607 (1016)
Q Consensus 535 ~~~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~--~~---~~~T~~~~~t~nP~WnE~f~f~~~~~--~~~~L~i~V~D~ 607 (1016)
..+.|.|+|++|+||+.++..|.+||||++.+. +. .++|++++++.||.|||+|.|.+..+ ....|.|+|||+
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~ 92 (136)
T cd08405 13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDK 92 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEEC
Confidence 345699999999999999999999999999983 22 37899999999999999999987432 245799999999
Q ss_pred cCCCCCCceeeEEEEEceecCCCCceeEEEECCc
Q 001764 608 DGPFNEATSLGHAEINFVKSDISDLADVWIPLQG 641 (1016)
Q Consensus 608 d~~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~~ 641 (1016)
|. ++++++||++.+++.+. +.....|++|..
T Consensus 93 ~~-~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~ 123 (136)
T cd08405 93 DR-LSRNDLIGKIYLGWKSG--GLELKHWKDMLS 123 (136)
T ss_pred CC-CCCCcEeEEEEECCccC--CchHHHHHHHHh
Confidence 98 88999999999999875 333466666654
No 163
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.51 E-value=7.3e-14 Score=134.56 Aligned_cols=88 Identities=32% Similarity=0.535 Sum_probs=80.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeE--EEeeeccCCCCCeeccEEEEEEe-CCCCEEEEEEEecCCCCCCcee
Q 001764 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQR--FKTKVVRKSLSPSWEEEFSFKVE-DLKDELVISVLDEDKYFNDDFV 79 (1016)
Q Consensus 3 L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~~k--~kTkvi~~t~nP~WnE~f~f~v~-~~~~~L~v~V~D~d~~~~d~~l 79 (1016)
|+|+|++|++|++.+..|.+||||++.+++.+ .+|+++++++||+|||+|.|.+. +....|.|+|||++.++++++|
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~i 81 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDLI 81 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCcee
Confidence 78999999999999999999999999998765 67888999999999999999984 3457899999999999999999
Q ss_pred EEEEeeccccc
Q 001764 80 GFLKIPVSRVF 90 (1016)
Q Consensus 80 G~~~v~l~~l~ 90 (1016)
|++.+++.+..
T Consensus 82 G~~~i~l~~~~ 92 (124)
T cd04037 82 GETVIDLEDRF 92 (124)
T ss_pred EEEEEeecccc
Confidence 99999998875
No 164
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.51 E-value=7.2e-14 Score=137.07 Aligned_cols=104 Identities=26% Similarity=0.449 Sum_probs=86.2
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eeeeeecCCCCCCCeeeEEEEEEeeCC--CCCeEEEEEEEc
Q 001764 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN--G---KSRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDF 607 (1016)
Q Consensus 535 ~~~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~--~---~~~~T~~~~~t~nP~WnE~f~f~~~~~--~~~~L~i~V~D~ 607 (1016)
..+.|+|+|++|+||+.++..|.+||||+|.+. + ..++|+++++++||.|||+|.|.+... ....|.|+|||+
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~ 92 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDY 92 (136)
T ss_pred CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeC
Confidence 445799999999999999999999999999984 2 237899999999999999999987432 134799999999
Q ss_pred cCCCCCCceeeEEEEEceecCCCCceeEEEECCc
Q 001764 608 DGPFNEATSLGHAEINFVKSDISDLADVWIPLQG 641 (1016)
Q Consensus 608 d~~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~~ 641 (1016)
|. +++|++||++.|++... +.....|+++..
T Consensus 93 ~~-~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~ 123 (136)
T cd08402 93 DR-IGKNDPIGKVVLGCNAT--GAELRHWSDMLA 123 (136)
T ss_pred CC-CCCCceeEEEEECCccC--ChHHHHHHHHHh
Confidence 99 89999999999999763 334466777653
No 165
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.50 E-value=9.7e-14 Score=135.17 Aligned_cols=87 Identities=22% Similarity=0.314 Sum_probs=76.5
Q ss_pred EEEEEEEEeecCCCCCC--CCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeC---CCCEEEEEEEecC
Q 001764 2 KLVVRVIEARNIPAMDQ--NGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDED 71 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~--~g~~dPyv~v~~~~-----~k~kTkvi~~t~nP~WnE~f~f~v~~---~~~~L~v~V~D~d 71 (1016)
+|.|.|++|+||++++. .+.+||||++++.. .++||+++++++||+|||.|.|.++. .+..|.|+|||++
T Consensus 16 ~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d 95 (138)
T cd08407 16 RLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQD 95 (138)
T ss_pred eEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCC
Confidence 68999999999999983 35599999999854 25789999999999999999999954 2578999999999
Q ss_pred CCCCCceeEEEEeeccc
Q 001764 72 KYFNDDFVGFLKIPVSR 88 (1016)
Q Consensus 72 ~~~~d~~lG~~~v~l~~ 88 (1016)
.++++++||++.+++..
T Consensus 96 ~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 96 SPGQSLPLGRCSLGLHT 112 (138)
T ss_pred CCcCcceeceEEecCcC
Confidence 99999999999999864
No 166
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.50 E-value=8.2e-14 Score=136.33 Aligned_cols=106 Identities=24% Similarity=0.326 Sum_probs=84.7
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEE-CC----eeeeeecCCCCCCCeeeEEEEEEeeCC-C-CCeEEEEEEEc
Q 001764 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTC-NG----KSRTSSIKFQQCDPMWNEIFEYDAMDE-P-PSMLDVEVYDF 607 (1016)
Q Consensus 535 ~~~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~-~~----~~~~T~~~~~t~nP~WnE~f~f~~~~~-~-~~~L~i~V~D~ 607 (1016)
..+.|.|+|++|+||+.+|..|.+||||++.+ .+ ..++|++++++.||.|||+|.|.+..+ . ...|.|+|||+
T Consensus 12 ~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~ 91 (135)
T cd08410 12 SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGH 91 (135)
T ss_pred CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeC
Confidence 34569999999999999999999999999997 33 237999999999999999999987432 2 33699999999
Q ss_pred cCCCCCCceeeEEEEEceecCCCCceeEEEECCcC
Q 001764 608 DGPFNEATSLGHAEINFVKSDISDLADVWIPLQGK 642 (1016)
Q Consensus 608 d~~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~~~ 642 (1016)
|. .+++++||++.|....... ...+.|+.|...
T Consensus 92 d~-~~~~~~iG~~~l~~~~~~~-~~~~~W~~l~~~ 124 (135)
T cd08410 92 NV-KSSNDFIGRIVIGQYSSGP-SETNHWRRMLNS 124 (135)
T ss_pred CC-CCCCcEEEEEEEcCccCCc-hHHHHHHHHHhC
Confidence 98 8899999999876543322 234678777643
No 167
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.50 E-value=4.3e-14 Score=138.67 Aligned_cols=103 Identities=29% Similarity=0.483 Sum_probs=87.5
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeC---CCCEEEEEEEecCC
Q 001764 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDK 72 (1016)
Q Consensus 1 m~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~-----~k~kTkvi~~t~nP~WnE~f~f~v~~---~~~~L~v~V~D~d~ 72 (1016)
++|.|+|++|+||+..+.+|.+||||++.+.. .+.+|+++++++||+|||+|.|.+.. ....|.|+|||++.
T Consensus 15 ~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~ 94 (136)
T cd08404 15 NRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDR 94 (136)
T ss_pred CeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCC
Confidence 47999999999999999999999999999842 25789999999999999999999843 34679999999999
Q ss_pred CCCCceeEEEEeecccccccCCCCCccEEEEccCCC
Q 001764 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (1016)
Q Consensus 73 ~~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~ 108 (1016)
++++++||++.+++... . .....|+.|....
T Consensus 95 ~~~~~~iG~~~~~~~~~-~----~~~~~w~~l~~~~ 125 (136)
T cd08404 95 VTKNEVIGRLVLGPKAS-G----SGGHHWKEVCNPP 125 (136)
T ss_pred CCCCccEEEEEECCcCC-C----chHHHHHHHHhCC
Confidence 99999999999999872 1 2256788887544
No 168
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.50 E-value=1.1e-13 Score=135.22 Aligned_cols=102 Identities=34% Similarity=0.592 Sum_probs=87.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeC---CCCEEEEEEEecCCC
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKY 73 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~-----~k~kTkvi~~t~nP~WnE~f~f~v~~---~~~~L~v~V~D~d~~ 73 (1016)
+|.|+|++|+||++.+..|.+||||++.+.+ .+.+|+++++++||+|||+|.|.+.. ....|.|+|||++..
T Consensus 14 ~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~~ 93 (133)
T cd08384 14 GLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIG 93 (133)
T ss_pred EEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCCC
Confidence 6999999999999999999999999999852 36899999999999999999999853 246899999999998
Q ss_pred CCCceeEEEEeecccccccCCCCCccEEEEccCCC
Q 001764 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (1016)
Q Consensus 74 ~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~ 108 (1016)
+++++||++.+++... +.....||.+....
T Consensus 94 ~~~~~lG~~~i~l~~~-----~~~~~~W~~~l~~~ 123 (133)
T cd08384 94 KSNDYIGGLQLGINAK-----GERLRHWLDCLKNP 123 (133)
T ss_pred CCccEEEEEEEecCCC-----CchHHHHHHHHhCC
Confidence 8999999999999752 22346798887543
No 169
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.49 E-value=1.4e-13 Score=132.05 Aligned_cols=103 Identities=13% Similarity=0.193 Sum_probs=82.0
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--Ce---eeeeecCCCCC-CCeeeEEEEEEeeCC-CCCeEEEEEEEc
Q 001764 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN--GK---SRTSSIKFQQC-DPMWNEIFEYDAMDE-PPSMLDVEVYDF 607 (1016)
Q Consensus 535 ~~~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~--~~---~~~T~~~~~t~-nP~WnE~f~f~~~~~-~~~~L~i~V~D~ 607 (1016)
..+.|+|+|++|+||++++..+.+||||+|.+- ++ +++|+++++|+ ||.|||+|.|++..+ ..-.|.|+|||+
T Consensus 12 ~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~ 91 (135)
T cd08692 12 VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSR 91 (135)
T ss_pred cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeC
Confidence 456799999999999998777788999999863 22 38999999996 699999999998543 334688999999
Q ss_pred cCCCCCCceeeEEEEEceecCCCCceeEEEEC
Q 001764 608 DGPFNEATSLGHAEINFVKSDISDLADVWIPL 639 (1016)
Q Consensus 608 d~~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L 639 (1016)
|. .+++++||++.+..+... +...+.|...
T Consensus 92 ~~-~~~n~~IG~v~lG~~~~~-~~~~~hW~~m 121 (135)
T cd08692 92 SS-VRRKHFLGQVWISSDSSS-SEAVEQWKDT 121 (135)
T ss_pred CC-CcCCceEEEEEECCccCC-chhhhhHHHH
Confidence 98 789999999999987632 2233556554
No 170
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.49 E-value=1.8e-13 Score=133.35 Aligned_cols=102 Identities=40% Similarity=0.654 Sum_probs=90.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeC--CCCEEEEEEEecCCCC
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVED--LKDELVISVLDEDKYF 74 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~-----~k~kTkvi~~t~nP~WnE~f~f~v~~--~~~~L~v~V~D~d~~~ 74 (1016)
+|+|+|++|++|+..+..+.+||||.+.+.+ .+++|++++++.||.|||+|.|.+.. ....|.|.|||++.++
T Consensus 14 ~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~~ 93 (131)
T cd04026 14 KLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRTT 93 (131)
T ss_pred EEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCCC
Confidence 5899999999999998889999999999963 57999999999999999999999854 3578999999999888
Q ss_pred CCceeEEEEeecccccccCCCCCccEEEEccCC
Q 001764 75 NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPK 107 (1016)
Q Consensus 75 ~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~ 107 (1016)
++++||++.+++.++... ....||+|.+.
T Consensus 94 ~~~~iG~~~~~l~~l~~~----~~~~w~~L~~~ 122 (131)
T cd04026 94 RNDFMGSLSFGVSELIKM----PVDGWYKLLNQ 122 (131)
T ss_pred CcceeEEEEEeHHHhCcC----ccCceEECcCc
Confidence 999999999999999643 35789999864
No 171
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.48 E-value=1.4e-13 Score=135.03 Aligned_cols=101 Identities=33% Similarity=0.563 Sum_probs=84.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeCC---CCEEEEEEEecCCC
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDEDKY 73 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~-----~k~kTkvi~~t~nP~WnE~f~f~v~~~---~~~L~v~V~D~d~~ 73 (1016)
+|.|+|++|++|+.++..|.+||||++.++. .+++|+++++++||+|||+|.|.+... ...|.|+|||++.+
T Consensus 16 ~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~~ 95 (136)
T cd08402 16 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDRI 95 (136)
T ss_pred eEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCCC
Confidence 6899999999999999999999999999842 357899999999999999999998432 35899999999999
Q ss_pred CCCceeEEEEeecccccccCCCCCccEEEEccCC
Q 001764 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPK 107 (1016)
Q Consensus 74 ~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~ 107 (1016)
+++++||++.+++... +.....|+.+...
T Consensus 96 ~~~~~iG~~~i~~~~~-----~~~~~~W~~~~~~ 124 (136)
T cd08402 96 GKNDPIGKVVLGCNAT-----GAELRHWSDMLAS 124 (136)
T ss_pred CCCceeEEEEECCccC-----ChHHHHHHHHHhC
Confidence 9999999999999763 1123557666543
No 172
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=5.5e-14 Score=156.87 Aligned_cols=122 Identities=25% Similarity=0.404 Sum_probs=101.7
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCC----
Q 001764 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGP---- 610 (1016)
Q Consensus 535 ~~~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~---- 610 (1016)
....++++|++|++|.++|..|++||||.+.++..+++|+++...+||+|||.|.|++++. ..+|+++|||.|..
T Consensus 293 wsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechns-tdrikvrvwded~dlksk 371 (1283)
T KOG1011|consen 293 WSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNS-TDRIKVRVWDEDNDLKSK 371 (1283)
T ss_pred cceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCC-CceeEEEEecCcccHHHH
Confidence 3456999999999999999999999999999999999999999999999999999998776 77999999999841
Q ss_pred ------CCCCceeeEEEEEceecCCCCceeEEEECCcCCc-CcccceEEEEEEEee
Q 001764 611 ------FNEATSLGHAEINFVKSDISDLADVWIPLQGKLA-QACQSKLHLRIFLNN 659 (1016)
Q Consensus 611 ------~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~~~~~-~~~~g~l~l~~~~~~ 659 (1016)
-.+|||+|++.|.+..+... .+.||.|+.+.. .+..|.|+|.+...-
T Consensus 372 lrqkl~resddflgqtvievrtlsge--mdvwynlekrtdksavsgairlhisvei 425 (1283)
T KOG1011|consen 372 LRQKLTRESDDFLGQTVIEVRTLSGE--MDVWYNLEKRTDKSAVSGAIRLHISVEI 425 (1283)
T ss_pred HHHHhhhcccccccceeEEEEecccc--hhhhcchhhccchhhccceEEEEEEEEE
Confidence 14789999999999998644 499999986432 334555555555443
No 173
>PLN03008 Phospholipase D delta
Probab=99.48 E-value=2.8e-13 Score=161.14 Aligned_cols=107 Identities=24% Similarity=0.428 Sum_probs=92.3
Q ss_pred CCCCcEEEEEECCeE-EEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCCCCCceeEEEEeecccccccCCCCCc
Q 001764 20 GYSDPYVRLQLGRQR-FKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLP 98 (1016)
Q Consensus 20 g~~dPyv~v~~~~~k-~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~v~V~D~d~~~~d~~lG~~~v~l~~l~~~~~~~~~ 98 (1016)
+++||||+|.+++++ .||+++++++||+|||+|.|.+......|.|+|||+|.++ +++||++.|||.++..++ ..
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge---~v 150 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGE---RI 150 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCC---ce
Confidence 467999999998764 6999999999999999999999877789999999999986 689999999999997643 36
Q ss_pred cEEEEccCCCCCCCCCcceEEEEEEEEEecCCC
Q 001764 99 TAWHSLQPKNKKSKNKDCGEILLTISFSHNTSS 131 (1016)
Q Consensus 99 ~~w~~L~~~~~~~~~~~~G~I~l~l~~~~~~~~ 131 (1016)
..|++|....++. .+.+|+|+|++.|.+...+
T Consensus 151 d~Wl~Ll~~~~kp-~k~~~kl~v~lqf~pv~~~ 182 (868)
T PLN03008 151 SGWFPVLGASGKP-PKAETAIFIDMKFTPFDQI 182 (868)
T ss_pred EEEEEccccCCCC-CCCCcEEEEEEEEEEcccc
Confidence 7899999877654 3567999999999987554
No 174
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.48 E-value=4.9e-13 Score=124.70 Aligned_cols=94 Identities=18% Similarity=0.329 Sum_probs=76.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEc------
Q 001764 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNG-----KSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDF------ 607 (1016)
Q Consensus 539 L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~------ 607 (1016)
|.|+|.+|+||+ |.+||||++.+.. ...+|+++++|+||+|||+|.|.+. ....|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~--~s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE--GSQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC--CCCEEEEEEEEccccccc
Confidence 689999999995 5699999999853 3489999999999999999999874 367999999998
Q ss_pred -cCCCCCCceeeEEEEEcee--cCCCCceeEEEECC
Q 001764 608 -DGPFNEATSLGHAEINFVK--SDISDLADVWIPLQ 640 (1016)
Q Consensus 608 -d~~~~~dd~lG~~~i~l~~--~~~~~~~~~w~~L~ 640 (1016)
|. .++|+++|.+.+.|.. +...+....-+.|.
T Consensus 74 ~d~-~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~~ 108 (118)
T cd08686 74 LDG-EGTDAIMGKGQIQLDPQSLQTKKWQEKVISMN 108 (118)
T ss_pred ccc-cCcccEEEEEEEEECHHHhccCCeeEEEEEec
Confidence 55 6789999999988866 44444445555653
No 175
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.48 E-value=5e-14 Score=137.87 Aligned_cols=104 Identities=27% Similarity=0.436 Sum_probs=85.8
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--Ce---eeeeecCCCCCCCeeeEEEEEEeeCC--CCCeEEEEEEEc
Q 001764 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN--GK---SRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDF 607 (1016)
Q Consensus 535 ~~~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~--~~---~~~T~~~~~t~nP~WnE~f~f~~~~~--~~~~L~i~V~D~ 607 (1016)
..+.|+|+|++|++|++++..|.+||||++.+. ++ .++|+++++++||.|||+|.|.+..+ ....|.|+|||+
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~ 91 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDY 91 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEEC
Confidence 346799999999999999999999999999984 22 37899999999999999999987432 224699999999
Q ss_pred cCCCCCCceeeEEEEEceecCCCCceeEEEECCc
Q 001764 608 DGPFNEATSLGHAEINFVKSDISDLADVWIPLQG 641 (1016)
Q Consensus 608 d~~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~~ 641 (1016)
|. ++++++||++.+++.. .+...+.|+.+..
T Consensus 92 ~~-~~~~~~IG~~~l~~~~--~~~~~~~w~~~~~ 122 (134)
T cd08403 92 DR-VGHNELIGVCRVGPNA--DGQGREHWNEMLA 122 (134)
T ss_pred CC-CCCCceeEEEEECCCC--CCchHHHHHHHHH
Confidence 99 8899999999998773 3444567877754
No 176
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.47 E-value=3.2e-13 Score=130.08 Aligned_cols=103 Identities=25% Similarity=0.361 Sum_probs=86.5
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeecCCCCCCCeeeEEEEEEeeCC---CCCeEEEEEEE
Q 001764 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN-----GKSRTSSIKFQQCDPMWNEIFEYDAMDE---PPSMLDVEVYD 606 (1016)
Q Consensus 535 ~~~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~WnE~f~f~~~~~---~~~~L~i~V~D 606 (1016)
..+.|+|+|++|++|+..+..+.+||||++.+. ....+|++++++.||.|||.|.|..... ....|.|+|||
T Consensus 13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d 92 (123)
T cd04035 13 ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLD 92 (123)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEE
Confidence 345699999999999999999999999999973 2348999999999999999999953322 24689999999
Q ss_pred ccCCCCCCceeeEEEEEceecCCCCceeEEEEC
Q 001764 607 FDGPFNEATSLGHAEINFVKSDISDLADVWIPL 639 (1016)
Q Consensus 607 ~d~~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L 639 (1016)
++. + .+++||++.++++++..+...+.|+.|
T Consensus 93 ~~~-~-~~~~iG~~~i~l~~l~~~~~~~~~~~~ 123 (123)
T cd04035 93 EDR-F-GNDFLGETRIPLKKLKPNQTKQFNICL 123 (123)
T ss_pred cCC-c-CCeeEEEEEEEcccCCCCcceEeeccC
Confidence 998 7 889999999999999887766666543
No 177
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.47 E-value=3.5e-13 Score=127.17 Aligned_cols=100 Identities=27% Similarity=0.516 Sum_probs=85.4
Q ss_pred CCCCCCcEEEEEECCe-EEEeeeccCCCCCeeccEEEEEEeCC-CCEEEEEEEecCCCCCCceeEEEEeecccccccCCC
Q 001764 18 QNGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDL-KDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNK 95 (1016)
Q Consensus 18 ~~g~~dPyv~v~~~~~-k~kTkvi~~t~nP~WnE~f~f~v~~~-~~~L~v~V~D~d~~~~d~~lG~~~v~l~~l~~~~~~ 95 (1016)
++|.+||||.+.++++ ..+|++++++.||+|||.|.|.+.+. ...|.|.|||++.+ ++++||++.++|.++... .
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~--~ 85 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDA--T 85 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhh--h
Confidence 4788999999999875 57999999999999999999999654 57899999999998 899999999999998642 1
Q ss_pred CCccEEEEccCCCCCCCCCcceEEEEEEEEEe
Q 001764 96 SLPTAWHSLQPKNKKSKNKDCGEILLTISFSH 127 (1016)
Q Consensus 96 ~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~ 127 (1016)
.....||+|.+ ...|+|++++.|.|
T Consensus 86 ~~~~~w~~L~~-------~~~G~i~~~~~~~p 110 (111)
T cd04052 86 SVGQQWFPLSG-------NGQGRIRISALWKP 110 (111)
T ss_pred hccceeEECCC-------CCCCEEEEEEEEec
Confidence 23578999985 23699999999975
No 178
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.47 E-value=2.4e-13 Score=133.09 Aligned_cols=102 Identities=25% Similarity=0.437 Sum_probs=85.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eEEEeeeccCCCCCeeccEEEEEEeC---CCCEEEEEEEecCC
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR------QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDK 72 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~------~k~kTkvi~~t~nP~WnE~f~f~v~~---~~~~L~v~V~D~d~ 72 (1016)
+|.|+|++|+||++.+..|.+||||++.+.. .+++|++++++.||+|||+|.|.+.. .+..|.|.|||++.
T Consensus 16 ~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~ 95 (138)
T cd08408 16 RLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRK 95 (138)
T ss_pred eEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCC
Confidence 6999999999999999999999999999842 25799999999999999999999953 35699999999999
Q ss_pred CCCCceeEEEEeecccccccCCCCCccEEEEccCC
Q 001764 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPK 107 (1016)
Q Consensus 73 ~~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~ 107 (1016)
++++++||++.+++...-.. ....|+.+...
T Consensus 96 ~~~~~~iG~v~l~~~~~~~~----~~~hW~~~l~~ 126 (138)
T cd08408 96 MKRKEMIGWFSLGLNSSGEE----EEEHWNEMKES 126 (138)
T ss_pred CCCCcEEEEEEECCcCCCch----HHHHHHHHHhC
Confidence 99999999999988654211 13467777543
No 179
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.47 E-value=3.2e-13 Score=132.45 Aligned_cols=102 Identities=31% Similarity=0.555 Sum_probs=84.6
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEEEeeeccCCCCCeeccEEEEEEeC---CCCEEEEEEEecCC
Q 001764 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLG--R---QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDK 72 (1016)
Q Consensus 1 m~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~--~---~k~kTkvi~~t~nP~WnE~f~f~v~~---~~~~L~v~V~D~d~ 72 (1016)
.+|.|+|++|+||+..+..|.+||||++.+. + .+.+|++++++.||+|||+|.|.+.. ....|.|+|||++.
T Consensus 15 ~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~ 94 (136)
T cd08405 15 NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDR 94 (136)
T ss_pred CeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCC
Confidence 3699999999999999989999999999983 2 35789999999999999999999842 24689999999999
Q ss_pred CCCCceeEEEEeecccccccCCCCCccEEEEccCC
Q 001764 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPK 107 (1016)
Q Consensus 73 ~~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~ 107 (1016)
++++++||++.+++... +.....|+.+...
T Consensus 95 ~~~~~~lG~~~i~~~~~-----~~~~~~w~~~~~~ 124 (136)
T cd08405 95 LSRNDLIGKIYLGWKSG-----GLELKHWKDMLSK 124 (136)
T ss_pred CCCCcEeEEEEECCccC-----CchHHHHHHHHhC
Confidence 99999999999999875 1123456665543
No 180
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.46 E-value=2.4e-13 Score=133.08 Aligned_cols=104 Identities=23% Similarity=0.309 Sum_probs=85.1
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---Ce---eeeeecCCCCCCCeeeEEEEEEeeCC--CCCeEEEEEEE
Q 001764 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN---GK---SRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYD 606 (1016)
Q Consensus 535 ~~~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~---~~---~~~T~~~~~t~nP~WnE~f~f~~~~~--~~~~L~i~V~D 606 (1016)
..+.|.|+|++|+||+.++..|.+||||++.+. ++ +++|++++++.||+|||+|.|.+..+ ....|.|.|||
T Consensus 13 ~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~ 92 (138)
T cd08408 13 LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYN 92 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEE
Confidence 345699999999999999999999999999984 22 37999999999999999999988542 34589999999
Q ss_pred ccCCCCCCceeeEEEEEceecCCCCceeEEEECC
Q 001764 607 FDGPFNEATSLGHAEINFVKSDISDLADVWIPLQ 640 (1016)
Q Consensus 607 ~d~~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~ 640 (1016)
+|. ++++++||++.+++..... ...+.|+.+.
T Consensus 93 ~~~-~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l 124 (138)
T cd08408 93 KRK-MKRKEMIGWFSLGLNSSGE-EEEEHWNEMK 124 (138)
T ss_pred CCC-CCCCcEEEEEEECCcCCCc-hHHHHHHHHH
Confidence 998 8999999999998875332 2235666664
No 181
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=99.46 E-value=4.8e-14 Score=120.75 Aligned_cols=67 Identities=40% Similarity=0.726 Sum_probs=48.7
Q ss_pred ccceeccCCCcccccccceeceeee-eccccceeeeeccEEEEeeccCCceE-EEEEecccceEEEEcC
Q 001764 690 SAFQKLFGLPPEEFLINDFTCHLKR-KMLLQGRLFLSARIIGFHANLFGHKT-NFFFLWEDIEDIQVLP 756 (1016)
Q Consensus 690 ~~f~~~F~l~~~E~l~~~~~c~~~~-~~~~~Grlyis~~~~cF~s~~~g~~t-~~~i~~~dI~~i~k~~ 756 (1016)
++|++.|+||.+|.|+.+|.|++.+ .++.+|+||+|.+++||+|+.+|..+ +++|||.||.+|+|.+
T Consensus 1 ~~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i~k~~ 69 (69)
T PF02893_consen 1 EKFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSIEKET 69 (69)
T ss_dssp ----------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEEEEEE-
T ss_pred CcccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeEEEEeC
Confidence 3689999999999999999999999 89999999999999999999999888 9999999999999864
No 182
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.46 E-value=2.9e-13 Score=129.71 Aligned_cols=97 Identities=22% Similarity=0.307 Sum_probs=83.7
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCe-------EEEeeeccCCCCCeeccEEEEEEe-CCCCEEEEEEEecCC----CC
Q 001764 7 VIEARNIPAMDQNGYSDPYVRLQLGRQ-------RFKTKVVRKSLSPSWEEEFSFKVE-DLKDELVISVLDEDK----YF 74 (1016)
Q Consensus 7 V~~Ar~L~~~d~~g~~dPyv~v~~~~~-------k~kTkvi~~t~nP~WnE~f~f~v~-~~~~~L~v~V~D~d~----~~ 74 (1016)
.++|++|+..+..|.+||||++.+.+. .++|+++++++||+|||+|.|.+. +....|.++|||++. ++
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 478999999999999999999999654 489999999999999999999863 445689999999997 78
Q ss_pred CCceeEEEEeecccccccCCCCCccEEEEccC
Q 001764 75 NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (1016)
Q Consensus 75 ~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~ 106 (1016)
++++||++.+++.++...+ ....|+.|.+
T Consensus 86 ~~d~iG~~~i~l~~l~~~~---~~~~~~~l~~ 114 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSP---GQKLTLPLKG 114 (120)
T ss_pred CCcEEEEEEEEHHHHhcCC---CcEEEEEccC
Confidence 9999999999999997643 2467888854
No 183
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.46 E-value=9.3e-14 Score=135.93 Aligned_cols=104 Identities=25% Similarity=0.384 Sum_probs=90.3
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----eeeeecCCCCCCCeeeEEEEEEeeCCC--CCeEEEEEEEcc
Q 001764 536 GWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGK-----SRTSSIKFQQCDPMWNEIFEYDAMDEP--PSMLDVEVYDFD 608 (1016)
Q Consensus 536 ~~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~-----~~~T~~~~~t~nP~WnE~f~f~~~~~~--~~~L~i~V~D~d 608 (1016)
.+.|.|+|++|+||+..+..+.+||||++.+.+. .++|+++.++.||.|||+|.|.+.... ...|.|+|||++
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~ 92 (134)
T cd00276 13 AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKD 92 (134)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecC
Confidence 3569999999999999999999999999998643 379999999999999999999875432 568999999999
Q ss_pred CCCCCCceeeEEEEEceecCCCCceeEEEECCcC
Q 001764 609 GPFNEATSLGHAEINFVKSDISDLADVWIPLQGK 642 (1016)
Q Consensus 609 ~~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~~~ 642 (1016)
. ++++++||++.+++.+ .+...+.|++|...
T Consensus 93 ~-~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 123 (134)
T cd00276 93 S-VGRNEVIGQVVLGPDS--GGEELEHWNEMLAS 123 (134)
T ss_pred C-CCCCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence 8 7889999999999999 55667899999754
No 184
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.45 E-value=2.1e-13 Score=176.67 Aligned_cols=120 Identities=20% Similarity=0.275 Sum_probs=102.2
Q ss_pred CCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeecCCCCCCCeeeEEEEEEeeCCC-CCeEEEEEEEccCCC
Q 001764 534 GDGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGK-SRTSSIKFQQCDPMWNEIFEYDAMDEP-PSMLDVEVYDFDGPF 611 (1016)
Q Consensus 534 ~~~~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~-~~~T~~~~~t~nP~WnE~f~f~~~~~~-~~~L~i~V~D~d~~~ 611 (1016)
.-.|.|.|+|++|+||. +..|.+||||+++++++ +++|++++++.||+|||.|+|.+..++ .+.|+|+|||+|. |
T Consensus 1977 ~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~-f 2053 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT-F 2053 (2102)
T ss_pred hCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc-c
Confidence 35678999999999998 55889999999999965 689999999999999999998664433 4679999999998 8
Q ss_pred CCCceeeEEEEEceecCCCCceeEEEECCcCCcCcccce---EEEEEEEee
Q 001764 612 NEATSLGHAEINFVKSDISDLADVWIPLQGKLAQACQSK---LHLRIFLNN 659 (1016)
Q Consensus 612 ~~dd~lG~~~i~l~~~~~~~~~~~w~~L~~~~~~~~~g~---l~l~~~~~~ 659 (1016)
++ |.+|.++|++.++..++....||+|.++++ ..|+ |+|++.|.+
T Consensus 2054 ~k-d~~G~~~i~l~~vv~~~~~~~~~~L~~~~~--k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2054 GK-SSLGKVTIQIDRVVMEGTYSGEYSLNPESN--KDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CC-CCCceEEEEHHHHhcCceeeeeeecCcccc--cCCCcceEEEEEEecC
Confidence 55 499999999999988888999999996533 2345 999998864
No 185
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.45 E-value=5.3e-13 Score=128.08 Aligned_cols=88 Identities=19% Similarity=0.326 Sum_probs=75.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeeeccCCC-CCeeccEEEEEEeC--CCCEEEEEEEecCCC
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG-----RQRFKTKVVRKSL-SPSWEEEFSFKVED--LKDELVISVLDEDKY 73 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~-----~~k~kTkvi~~t~-nP~WnE~f~f~v~~--~~~~L~v~V~D~d~~ 73 (1016)
+|.|.|++|+||++.+..+..||||+|.+- -.++||+++++++ ||+|||+|.|+++. .+-.|.|+|||++..
T Consensus 15 rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~~ 94 (135)
T cd08692 15 RIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSSV 94 (135)
T ss_pred eEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeCCCC
Confidence 689999999999998666778999999983 1468999999995 69999999999943 345788999999998
Q ss_pred CCCceeEEEEeecccc
Q 001764 74 FNDDFVGFLKIPVSRV 89 (1016)
Q Consensus 74 ~~d~~lG~~~v~l~~l 89 (1016)
+++++||++.++....
T Consensus 95 ~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 95 RRKHFLGQVWISSDSS 110 (135)
T ss_pred cCCceEEEEEECCccC
Confidence 9999999999998763
No 186
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.43 E-value=2.3e-13 Score=133.19 Aligned_cols=103 Identities=30% Similarity=0.467 Sum_probs=84.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeC--C-CCEEEEEEEecCCC
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVED--L-KDELVISVLDEDKY 73 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~-----~k~kTkvi~~t~nP~WnE~f~f~v~~--~-~~~L~v~V~D~d~~ 73 (1016)
+|.|+|++|++|+..+.+|.+||||++++.. .+++|+++++++||+|||+|.|.+.. . ...|.|+|||++..
T Consensus 15 ~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~~ 94 (135)
T cd08410 15 RLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNVK 94 (135)
T ss_pred eEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCCC
Confidence 6899999999999999999999999999832 35799999999999999999999843 2 34799999999998
Q ss_pred CCCceeEEEEeecccccccCCCCCccEEEEccCCC
Q 001764 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (1016)
Q Consensus 74 ~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~ 108 (1016)
+++++||++.+.....- ......|+.|....
T Consensus 95 ~~~~~iG~~~l~~~~~~----~~~~~~W~~l~~~~ 125 (135)
T cd08410 95 SSNDFIGRIVIGQYSSG----PSETNHWRRMLNSQ 125 (135)
T ss_pred CCCcEEEEEEEcCccCC----chHHHHHHHHHhCC
Confidence 99999999987653321 11246788887654
No 187
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.43 E-value=8.6e-13 Score=129.12 Aligned_cols=103 Identities=29% Similarity=0.535 Sum_probs=84.6
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeCC---CCEEEEEEEecCC
Q 001764 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDEDK 72 (1016)
Q Consensus 1 m~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~-----~k~kTkvi~~t~nP~WnE~f~f~v~~~---~~~L~v~V~D~d~ 72 (1016)
.+|+|+|++|++|++.+..|.+||||++.+.. .+++|+++++++||+|||+|.|.+... ...|.|+|||++.
T Consensus 14 ~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~ 93 (134)
T cd08403 14 GRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDR 93 (134)
T ss_pred CEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC
Confidence 36999999999999999999999999999842 357899999999999999999998432 3479999999999
Q ss_pred CCCCceeEEEEeecccccccCCCCCccEEEEccCCC
Q 001764 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (1016)
Q Consensus 73 ~~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~ 108 (1016)
++++++||++.+++... +.....|+.+....
T Consensus 94 ~~~~~~IG~~~l~~~~~-----~~~~~~w~~~~~~~ 124 (134)
T cd08403 94 VGHNELIGVCRVGPNAD-----GQGREHWNEMLANP 124 (134)
T ss_pred CCCCceeEEEEECCCCC-----CchHHHHHHHHHCC
Confidence 99999999999987632 12245677776443
No 188
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=7.5e-13 Score=152.58 Aligned_cols=126 Identities=26% Similarity=0.406 Sum_probs=108.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe---eeeeecCCCCCCCeeeEEEEEEeeC--CCCCeEEEEEEEccCCCC
Q 001764 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGK---SRTSSIKFQQCDPMWNEIFEYDAMD--EPPSMLDVEVYDFDGPFN 612 (1016)
Q Consensus 538 ~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~---~~~T~~~~~t~nP~WnE~f~f~~~~--~~~~~L~i~V~D~d~~~~ 612 (1016)
.|+|+|++|++|+.+|..|.+||||++++-.. +++|++.++++||.|||+|.|.+.. .....|.+.|||.|+ |+
T Consensus 168 ~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr-fs 246 (421)
T KOG1028|consen 168 LLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR-FS 246 (421)
T ss_pred EEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCC-cc
Confidence 49999999999999998889999999998533 3899999999999999999998632 356789999999999 99
Q ss_pred CCceeeEEEEEceecCCCCceeEEEECCcC--CcCcccceEEEEEEEeecCCCc
Q 001764 613 EATSLGHAEINFVKSDISDLADVWIPLQGK--LAQACQSKLHLRIFLNNTKGSN 664 (1016)
Q Consensus 613 ~dd~lG~~~i~l~~~~~~~~~~~w~~L~~~--~~~~~~g~l~l~~~~~~~~~~~ 664 (1016)
++++||++.++|..+........|.+|... ......|+|.+.+.|....+.-
T Consensus 247 r~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g~l 300 (421)
T KOG1028|consen 247 RHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAGRL 300 (421)
T ss_pred cccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCCCeE
Confidence 999999999999998887778999999853 2223347999999998876643
No 189
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=2.5e-13 Score=151.64 Aligned_cols=124 Identities=31% Similarity=0.548 Sum_probs=108.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCC--------
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKY-------- 73 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~~k~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~v~V~D~d~~-------- 73 (1016)
++.++|+.|.+|.++|+.|++||||..++++.+.||+++..++||+|||.|+|...+..+.|.+.|||+|.-
T Consensus 296 kitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksklrqk 375 (1283)
T KOG1011|consen 296 KITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLRQK 375 (1283)
T ss_pred eeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999999999999998852
Q ss_pred ---CCCceeEEEEeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEEEEEecCCCC
Q 001764 74 ---FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHNTSSA 132 (1016)
Q Consensus 74 ---~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~~~~~~ 132 (1016)
..|+|||+..|.+..+.. ..+.||.|..+..+ ..+.|-|+|.+...-...+.
T Consensus 376 l~resddflgqtvievrtlsg-----emdvwynlekrtdk--savsgairlhisveikgeek 430 (1283)
T KOG1011|consen 376 LTRESDDFLGQTVIEVRTLSG-----EMDVWYNLEKRTDK--SAVSGAIRLHISVEIKGEEK 430 (1283)
T ss_pred hhhcccccccceeEEEEeccc-----chhhhcchhhccch--hhccceEEEEEEEEEcCccc
Confidence 358999999999888743 25789999987765 46889999999877654443
No 190
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.43 E-value=9.3e-13 Score=129.11 Aligned_cols=101 Identities=28% Similarity=0.414 Sum_probs=82.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeC--C-CCEEEEEEEecCCC
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVED--L-KDELVISVLDEDKY 73 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~-----~k~kTkvi~~t~nP~WnE~f~f~v~~--~-~~~L~v~V~D~d~~ 73 (1016)
+|.|+|++|+||++.+ .+.+||||++.+.. .+++|++++++.||+|||+|.|.++. . ...|.|+|||++.+
T Consensus 16 ~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~ 94 (137)
T cd08409 16 RLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGV 94 (137)
T ss_pred eEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCCC
Confidence 6899999999999998 78899999999853 36799999999999999999999942 2 36899999999998
Q ss_pred CCCceeEEEEeecccccccCCCCCccEEEEccC
Q 001764 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (1016)
Q Consensus 74 ~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~ 106 (1016)
+++++||++.++......+ .....|..+..
T Consensus 95 ~~~~~lG~v~ig~~~~~~~---~~~~hW~~~~~ 124 (137)
T cd08409 95 RKSKLLGRVVLGPFMYARG---KELEHWNDMLS 124 (137)
T ss_pred CCcceEEEEEECCcccCCC---hHHHHHHHHHh
Confidence 9999999999986544221 12345666554
No 191
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.42 E-value=2.5e-13 Score=133.18 Aligned_cols=103 Identities=17% Similarity=0.260 Sum_probs=83.7
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeecCCCCCCCeeeEEEEEEeeCC--CCCeEEEEEEEcc
Q 001764 536 GWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNG-----KSRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDFD 608 (1016)
Q Consensus 536 ~~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~~~~~--~~~~L~i~V~D~d 608 (1016)
...|.|+|++|+||+..+ .+.+||||++.+.. .+++|++++++.||+|||.|.|.+..+ ....|.|+|||.+
T Consensus 14 ~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~ 92 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSG 92 (137)
T ss_pred CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCC
Confidence 356999999999999999 88899999999753 247899999999999999999988432 2357999999999
Q ss_pred CCCCCCceeeEEEEEceecCCCCceeEEEECC
Q 001764 609 GPFNEATSLGHAEINFVKSDISDLADVWIPLQ 640 (1016)
Q Consensus 609 ~~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~ 640 (1016)
. ..++++||++.+.......+...+.|..+.
T Consensus 93 ~-~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~ 123 (137)
T cd08409 93 G-VRKSKLLGRVVLGPFMYARGKELEHWNDML 123 (137)
T ss_pred C-CCCcceEEEEEECCcccCCChHHHHHHHHH
Confidence 8 889999999999865544444445565554
No 192
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.41 E-value=3.3e-13 Score=132.05 Aligned_cols=102 Identities=32% Similarity=0.526 Sum_probs=88.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----EEEeeeccCCCCCeeccEEEEEEeCC---CCEEEEEEEecCCC
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ-----RFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDEDKY 73 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~~-----k~kTkvi~~t~nP~WnE~f~f~v~~~---~~~L~v~V~D~d~~ 73 (1016)
+|.|+|++|+||+..+..+.+||||++.+.+. +++|+++.++.||.|||+|.|.+... ...|.|+|||.+.+
T Consensus 15 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~ 94 (134)
T cd00276 15 RLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSV 94 (134)
T ss_pred EEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCCC
Confidence 69999999999999988899999999998642 57999999999999999999999543 57899999999988
Q ss_pred CCCceeEEEEeecccccccCCCCCccEEEEccCCC
Q 001764 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (1016)
Q Consensus 74 ~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~ 108 (1016)
+++++||++.+++.+ . +.....|+.|....
T Consensus 95 ~~~~~lG~~~i~l~~-~----~~~~~~W~~l~~~~ 124 (134)
T cd00276 95 GRNEVIGQVVLGPDS-G----GEELEHWNEMLASP 124 (134)
T ss_pred CCCceeEEEEECCCC-C----CcHHHHHHHHHhCC
Confidence 899999999999988 2 22357899998754
No 193
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.40 E-value=1.4e-12 Score=121.57 Aligned_cols=80 Identities=28% Similarity=0.436 Sum_probs=69.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEec-------
Q 001764 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDE------- 70 (1016)
Q Consensus 3 L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~-----~k~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~v~V~D~------- 70 (1016)
|.|+|.+|+||+ +.+||||.+.++. .+.+|+++++++||+|||+|.|.+.. ...|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~ 74 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKL 74 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEcccccccc
Confidence 689999999995 5699999999853 46999999999999999999999964 77999999998
Q ss_pred CCCCCCceeEEEEeeccc
Q 001764 71 DKYFNDDFVGFLKIPVSR 88 (1016)
Q Consensus 71 d~~~~d~~lG~~~v~l~~ 88 (1016)
|..++|+++|.+.+.|..
T Consensus 75 d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 75 DGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred cccCcccEEEEEEEEECH
Confidence 566789999998887754
No 194
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.39 E-value=2.5e-12 Score=123.85 Aligned_cols=90 Identities=36% Similarity=0.662 Sum_probs=79.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeeeccCCCCCeeccEEEEEE-eC---CCCEEEEEEEecCC
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKV-ED---LKDELVISVLDEDK 72 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~-----~~k~kTkvi~~t~nP~WnE~f~f~v-~~---~~~~L~v~V~D~d~ 72 (1016)
+|.|+|++|++|++.+..+.+||||++.+. ..+.+|++++++.||+|||.|.|.. .. ....|.|+|||++.
T Consensus 16 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~ 95 (123)
T cd04035 16 ALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDR 95 (123)
T ss_pred EEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCC
Confidence 699999999999999988999999999983 2469999999999999999999964 22 24689999999998
Q ss_pred CCCCceeEEEEeeccccccc
Q 001764 73 YFNDDFVGFLKIPVSRVFDA 92 (1016)
Q Consensus 73 ~~~d~~lG~~~v~l~~l~~~ 92 (1016)
+ ++++||++.+++.++...
T Consensus 96 ~-~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 96 F-GNDFLGETRIPLKKLKPN 114 (123)
T ss_pred c-CCeeEEEEEEEcccCCCC
Confidence 7 899999999999999653
No 195
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.38 E-value=2.5e-13 Score=160.20 Aligned_cols=89 Identities=25% Similarity=0.371 Sum_probs=82.2
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee--eeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCCCC
Q 001764 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKS--RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEA 614 (1016)
Q Consensus 537 ~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~~--~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~~d 614 (1016)
-+++|.|++|-+|.+.|.+|.+||||.+.+|++. -+...+.+|+||++++.|++...-+....+.++|||+|. ++.|
T Consensus 613 ~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~-~~~d 691 (1105)
T KOG1326|consen 613 CLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDL-EAQD 691 (1105)
T ss_pred eeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeec-cccc
Confidence 3588999999999999999999999999999988 788899999999999999998877777789999999999 8999
Q ss_pred ceeeEEEEEcee
Q 001764 615 TSLGHAEINFVK 626 (1016)
Q Consensus 615 d~lG~~~i~l~~ 626 (1016)
+.||+..++|..
T Consensus 692 ~~iget~iDLEn 703 (1105)
T KOG1326|consen 692 EKIGETTIDLEN 703 (1105)
T ss_pred chhhceehhhhh
Confidence 999999999865
No 196
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.37 E-value=2.5e-12 Score=121.29 Aligned_cols=88 Identities=19% Similarity=0.322 Sum_probs=75.3
Q ss_pred EEEEEeecCCCCCCCCCCCcEEEEEECCe------eeeeecCCCCCCCeeeEEEEEEee----CCCCCeEEEEEEEccCC
Q 001764 541 VALIKGDNLAAVDSSGFCDPYVVFTCNGK------SRTSSIKFQQCDPMWNEIFEYDAM----DEPPSMLDVEVYDFDGP 610 (1016)
Q Consensus 541 V~v~~A~~L~~~d~~g~sDPyv~v~~~~~------~~~T~~~~~t~nP~WnE~f~f~~~----~~~~~~L~i~V~D~d~~ 610 (1016)
+-.++|++|+.+|..|.+||||++.+.+. .++|+++++++||.|| .|.|.+. .+....|.|+|||+|.
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~- 81 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS- 81 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC-
Confidence 44568999999999999999999997543 3899999999999999 6888652 2336789999999999
Q ss_pred CCCCceeeEEEEEceecCCC
Q 001764 611 FNEATSLGHAEINFVKSDIS 630 (1016)
Q Consensus 611 ~~~dd~lG~~~i~l~~~~~~ 630 (1016)
+++|++||++.+++.++...
T Consensus 82 ~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 82 SGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCCCcEEEEEEEEHHHHhcC
Confidence 88999999999999998743
No 197
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.35 E-value=5.1e-12 Score=119.15 Aligned_cols=87 Identities=22% Similarity=0.483 Sum_probs=75.7
Q ss_pred EEEEEEeecCCCCCCCCCCCcEEEEEECCe------EEEeeeccCCCCCeeccEEEEEEe-----CCCCEEEEEEEecCC
Q 001764 4 VVRVIEARNIPAMDQNGYSDPYVRLQLGRQ------RFKTKVVRKSLSPSWEEEFSFKVE-----DLKDELVISVLDEDK 72 (1016)
Q Consensus 4 ~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~~------k~kTkvi~~t~nP~WnE~f~f~v~-----~~~~~L~v~V~D~d~ 72 (1016)
.+-.++|++|+..+..|.+||||++.+.+. .++|+++++++||+|| +|.|.+. +....|.|+|||++.
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~ 81 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS 81 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence 345678999999999999999999998543 5999999999999999 7888762 236799999999999
Q ss_pred CCCCceeEEEEeecccccc
Q 001764 73 YFNDDFVGFLKIPVSRVFD 91 (1016)
Q Consensus 73 ~~~d~~lG~~~v~l~~l~~ 91 (1016)
+++|++||++.+++.++..
T Consensus 82 ~~~d~~iG~~~~~l~~l~~ 100 (110)
T cd04047 82 SGKHDLIGEFETTLDELLK 100 (110)
T ss_pred CCCCcEEEEEEEEHHHHhc
Confidence 9999999999999999973
No 198
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.35 E-value=4.7e-12 Score=112.83 Aligned_cols=82 Identities=35% Similarity=0.590 Sum_probs=75.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCCCCc
Q 001764 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNG---KSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEAT 615 (1016)
Q Consensus 539 L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~---~~~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~~dd 615 (1016)
|+|+|++|+||+..+..+..||||++.+++ ..++|+++.++.+|.|||+|.|.+.......|.|+|||++. .++|+
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~-~~~~~ 79 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDS-FGKDE 79 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETS-SSSEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCC-CCCCC
Confidence 789999999999999899999999999987 66999999999999999999998766666679999999998 88899
Q ss_pred eeeEEE
Q 001764 616 SLGHAE 621 (1016)
Q Consensus 616 ~lG~~~ 621 (1016)
+||++.
T Consensus 80 ~iG~~~ 85 (85)
T PF00168_consen 80 LIGEVK 85 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999974
No 199
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=99.31 E-value=2.5e-12 Score=107.26 Aligned_cols=59 Identities=37% Similarity=0.571 Sum_probs=56.4
Q ss_pred CCcccccccceeceeeeeccccceeeeeccEEEEeeccCCceE-EEEEecccceEEEEcC
Q 001764 698 LPPEEFLINDFTCHLKRKMLLQGRLFLSARIIGFHANLFGHKT-NFFFLWEDIEDIQVLP 756 (1016)
Q Consensus 698 l~~~E~l~~~~~c~~~~~~~~~Grlyis~~~~cF~s~~~g~~t-~~~i~~~dI~~i~k~~ 756 (1016)
||++|.|+.+|.|+|.+.++.+||||+|++++||+|+.+|..+ +++||+.||.+|+|..
T Consensus 2 l~~~E~l~~~~~C~l~~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~i~k~~ 61 (61)
T smart00568 2 LPEEEKLIADYSCYLSRDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADITRIEKST 61 (61)
T ss_pred cCCCcEEEEEEEeEECCCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHeeEEEECC
Confidence 7899999999999999999999999999999999999999988 9999999999999863
No 200
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.30 E-value=6.4e-12 Score=163.10 Aligned_cols=114 Identities=26% Similarity=0.442 Sum_probs=96.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EEEeeeccCCCCCeeccEEEEEEeCC--CCEEEEEEEecCCCCCCce
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDL--KDELVISVLDEDKYFNDDF 78 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~~-k~kTkvi~~t~nP~WnE~f~f~v~~~--~~~L~v~V~D~d~~~~d~~ 78 (1016)
.|.|+|++|+||. ...|.+||||++.++++ +.||++++++.||+|||+|.|.+.++ ...|+|+|||+|.+++| .
T Consensus 1981 ~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~kd-~ 2057 (2102)
T PLN03200 1981 SLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGKS-S 2057 (2102)
T ss_pred ceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCCC-C
Confidence 5899999999998 55789999999999966 88999999999999999999888654 36799999999998654 8
Q ss_pred eEEEEeecccccccCCCCCccEEEEccCCCCCCCCCcceE---EEEEEEEE
Q 001764 79 VGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGE---ILLTISFS 126 (1016)
Q Consensus 79 lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~---I~l~l~~~ 126 (1016)
+|.+.|++.++.... ....||+|.+++.+ .|+ |++.+.+.
T Consensus 2058 ~G~~~i~l~~vv~~~---~~~~~~~L~~~~~k-----~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2058 LGKVTIQIDRVVMEG---TYSGEYSLNPESNK-----DGSSRTLEIEFQWS 2100 (2102)
T ss_pred CceEEEEHHHHhcCc---eeeeeeecCccccc-----CCCcceEEEEEEec
Confidence 999999999997533 35679999975432 366 99988775
No 201
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.28 E-value=1.8e-11 Score=109.11 Aligned_cols=81 Identities=40% Similarity=0.741 Sum_probs=73.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEEEeeeccCCCCCeeccEEEEEE-eCCCCEEEEEEEecCCCCCCce
Q 001764 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGR---QRFKTKVVRKSLSPSWEEEFSFKV-EDLKDELVISVLDEDKYFNDDF 78 (1016)
Q Consensus 3 L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~---~k~kTkvi~~t~nP~WnE~f~f~v-~~~~~~L~v~V~D~d~~~~d~~ 78 (1016)
|+|+|++|+||+..+..+.+||||++.+++ ...+|+++.++.+|.|+|+|.|.+ .+....|.|+|||++..+++++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 789999999999988888999999999976 679999999999999999999997 3444669999999999888999
Q ss_pred eEEEE
Q 001764 79 VGFLK 83 (1016)
Q Consensus 79 lG~~~ 83 (1016)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
No 202
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.21 E-value=2.4e-11 Score=139.11 Aligned_cols=119 Identities=22% Similarity=0.311 Sum_probs=105.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCee-eeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCCCCcee
Q 001764 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSL 617 (1016)
Q Consensus 539 L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~~-~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~~dd~l 617 (1016)
|.|+|.+|+|||+.+..|.+||||.|.+..+. .+|.++.+++.|-|.|+|.|.+... -..|.|-|||.| +++|+.|
T Consensus 7 l~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~-F~~l~fYv~D~d--~~~D~~I 83 (800)
T KOG2059|consen 7 LKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRT-FRYLSFYVWDRD--LKRDDII 83 (800)
T ss_pred eeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcc-eeeEEEEEeccc--ccccccc
Confidence 89999999999999999999999999999887 8999999999999999999977443 567999999999 4899999
Q ss_pred eEEEEEceecCCCCceeEEEECCcCCc-CcccceEEEEEEEeec
Q 001764 618 GHAEINFVKSDISDLADVWIPLQGKLA-QACQSKLHLRIFLNNT 660 (1016)
Q Consensus 618 G~~~i~l~~~~~~~~~~~w~~L~~~~~-~~~~g~l~l~~~~~~~ 660 (1016)
|.+.|.-.++....+.+.|+.|..-.. ...+|++||++.+...
T Consensus 84 GKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~ 127 (800)
T KOG2059|consen 84 GKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEA 127 (800)
T ss_pred ceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEeccc
Confidence 999999888887778899999986443 3459999999997543
No 203
>PLN02223 phosphoinositide phospholipase C
Probab=99.19 E-value=1.6e-10 Score=132.98 Aligned_cols=117 Identities=20% Similarity=0.261 Sum_probs=95.6
Q ss_pred eEEEEEEEEeecCCCC-----CCCCCCCcEEEEEECCee-----eeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEE
Q 001764 537 WLLTVALIKGDNLAAV-----DSSGFCDPYVVFTCNGKS-----RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYD 606 (1016)
Q Consensus 537 ~~L~V~v~~A~~L~~~-----d~~g~sDPyv~v~~~~~~-----~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D 606 (1016)
..|+|+|+.|++++.. +.....||||+|.+.|.. ++|++..++.||+|||+|+|.+..+.-..|+|+|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D 488 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD 488 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence 4699999999998521 223467999999987643 678899999999999999999877667789999999
Q ss_pred ccCCCCCCceeeEEEEEceecCCCCceeEEEECCcCCcCc-ccceEEEEEEE
Q 001764 607 FDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQA-CQSKLHLRIFL 657 (1016)
Q Consensus 607 ~d~~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~~~~~~~-~~g~l~l~~~~ 657 (1016)
+|. ...|+|+|++.+|+..+..| -++++|..+.+.. ...+|.+++.+
T Consensus 489 ~D~-~~~ddfiGQ~~LPv~~Lr~G---yR~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 489 YEV-STADAFCGQTCLPVSELIEG---IRAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred cCC-CCCCcEEEEEecchHHhcCC---ceeEeccCCCcCCCCCceEEEEEEe
Confidence 998 78899999999999999876 5788998655544 45677777765
No 204
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.18 E-value=1.4e-10 Score=105.98 Aligned_cols=100 Identities=34% Similarity=0.616 Sum_probs=88.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCCCCcee
Q 001764 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNG-KSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSL 617 (1016)
Q Consensus 539 L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~-~~~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~~dd~l 617 (1016)
|.|+|++|++|+.....+..||||.+.+.+ ...+|.++.++.||.|||.|.|.+.......|.|+|||++. ...+.+|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~-~~~~~~i 79 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDR-FSKDDFL 79 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCC-CCCCcee
Confidence 479999999999877788999999999998 77999999999999999999998765457789999999998 6778899
Q ss_pred eEEEEEceecC-CCCceeEEEEC
Q 001764 618 GHAEINFVKSD-ISDLADVWIPL 639 (1016)
Q Consensus 618 G~~~i~l~~~~-~~~~~~~w~~L 639 (1016)
|++.+++.++. .......|++|
T Consensus 80 g~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 80 GEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEEEeHHHhhhcCCcCcceecC
Confidence 99999999987 66667888875
No 205
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.10 E-value=5.1e-10 Score=102.55 Aligned_cols=93 Identities=30% Similarity=0.546 Sum_probs=81.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe---eeeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCCCCc
Q 001764 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGK---SRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEAT 615 (1016)
Q Consensus 539 L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~---~~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~~dd 615 (1016)
|.|+|++|++|+..+..+..+|||.+.+.+. ..+|+.+.++.||.|||+|.|.+.......|.|+|||.+. ...+.
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~-~~~~~ 80 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDR-FGRDD 80 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCC-ccCCc
Confidence 7899999999999887678999999999875 6999999999999999999998755447899999999997 66789
Q ss_pred eeeEEEEEceecCCCCc
Q 001764 616 SLGHAEINFVKSDISDL 632 (1016)
Q Consensus 616 ~lG~~~i~l~~~~~~~~ 632 (1016)
++|.+.+++.++..+..
T Consensus 81 ~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 81 FIGQVTIPLSDLLLGGR 97 (101)
T ss_pred eeEEEEEEHHHcccCcc
Confidence 99999999999876543
No 206
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.08 E-value=9.1e-10 Score=100.49 Aligned_cols=100 Identities=50% Similarity=0.865 Sum_probs=86.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEeeeccCCCCCeeccEEEEEEeC-CCCEEEEEEEecCCCCCCceeE
Q 001764 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGR-QRFKTKVVRKSLSPSWEEEFSFKVED-LKDELVISVLDEDKYFNDDFVG 80 (1016)
Q Consensus 3 L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~-~k~kTkvi~~t~nP~WnE~f~f~v~~-~~~~L~v~V~D~d~~~~d~~lG 80 (1016)
|.|+|++|++|+.....+.++|||.+.+.. ...+|+++.++.||.|||.|.|.+.. ....|.++||+++..+.+.+||
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 579999999998877777899999999987 88999999999999999999999976 6789999999999887789999
Q ss_pred EEEeecccccccCCCCCccEEEEc
Q 001764 81 FLKIPVSRVFDADNKSLPTAWHSL 104 (1016)
Q Consensus 81 ~~~v~l~~l~~~~~~~~~~~w~~L 104 (1016)
.+.+++..+.. .......|++|
T Consensus 81 ~~~~~l~~l~~--~~~~~~~~~~l 102 (102)
T cd00030 81 EVEIPLSELLD--SGKEGELWLPL 102 (102)
T ss_pred EEEEeHHHhhh--cCCcCcceecC
Confidence 99999999861 12235667765
No 207
>PLN02223 phosphoinositide phospholipase C
Probab=99.06 E-value=1.7e-09 Score=124.67 Aligned_cols=116 Identities=22% Similarity=0.316 Sum_probs=92.2
Q ss_pred EEEEEEEEeecCCCC-----CCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeCCC-CEEEEEEEec
Q 001764 2 KLVVRVIEARNIPAM-----DQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVEDLK-DELVISVLDE 70 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~-----d~~g~~dPyv~v~~~~-----~k~kTkvi~~t~nP~WnE~f~f~v~~~~-~~L~v~V~D~ 70 (1016)
+|.|+|+.|.+++.. +.....||||+|.+.+ .+++|++..++.||+|||+|.|.+..++ ..|+|+|+|+
T Consensus 410 ~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D~ 489 (537)
T PLN02223 410 ILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYDY 489 (537)
T ss_pred EEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEec
Confidence 689999999987521 2234589999999843 3577888778999999999999996554 5789999999
Q ss_pred CCCCCCceeEEEEeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEEEE
Q 001764 71 DKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (1016)
Q Consensus 71 d~~~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~ 125 (1016)
|...+++|+|+..+|+..+.. +.++++|.++.+.. -....|.+++.+
T Consensus 490 D~~~~ddfiGQ~~LPv~~Lr~------GyR~VpL~~~~g~~--l~~~~Ll~~f~~ 536 (537)
T PLN02223 490 EVSTADAFCGQTCLPVSELIE------GIRAVPLYDERGKA--CSSTMLLTRFKW 536 (537)
T ss_pred CCCCCCcEEEEEecchHHhcC------CceeEeccCCCcCC--CCCceEEEEEEe
Confidence 988889999999999999964 57899999877653 234577777665
No 208
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.04 E-value=1.7e-09 Score=99.12 Aligned_cols=90 Identities=44% Similarity=0.790 Sum_probs=80.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe---EEEeeeccCCCCCeeccEEEEEEeCC-CCEEEEEEEecCCCCCCc
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ---RFKTKVVRKSLSPSWEEEFSFKVEDL-KDELVISVLDEDKYFNDD 77 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~~---k~kTkvi~~t~nP~WnE~f~f~v~~~-~~~L~v~V~D~d~~~~d~ 77 (1016)
+|.|+|++|++|......+..+|||.+.+... ..+|+++.++.||.|||+|.|.+... ...|.|+|||....+.+.
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~ 80 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDD 80 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCc
Confidence 37899999999998876678999999999865 79999999999999999999999766 889999999999877799
Q ss_pred eeEEEEeecccccc
Q 001764 78 FVGFLKIPVSRVFD 91 (1016)
Q Consensus 78 ~lG~~~v~l~~l~~ 91 (1016)
++|.+.+++.++..
T Consensus 81 ~~G~~~~~l~~~~~ 94 (101)
T smart00239 81 FIGQVTIPLSDLLL 94 (101)
T ss_pred eeEEEEEEHHHccc
Confidence 99999999988854
No 209
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.03 E-value=6e-11 Score=135.14 Aligned_cols=130 Identities=22% Similarity=0.466 Sum_probs=105.7
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C-----------e----------------e--eeeecCCCCCCCe
Q 001764 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN--G-----------K----------------S--RTSSIKFQQCDPM 583 (1016)
Q Consensus 535 ~~~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~--~-----------~----------------~--~~T~~~~~t~nP~ 583 (1016)
+...+.|.+.+|+||.++|.+|.||||+...+- . + + +-|+++++|+||.
T Consensus 112 P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPk 191 (1103)
T KOG1328|consen 112 PSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPK 191 (1103)
T ss_pred CcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcc
Confidence 455688999999999999999999999997651 0 0 0 5689999999999
Q ss_pred eeEEEEEEeeCCCCCeEEEEEEEccCC--------------------------------CC---CCceeeEEEEEceecC
Q 001764 584 WNEIFEYDAMDEPPSMLDVEVYDFDGP--------------------------------FN---EATSLGHAEINFVKSD 628 (1016)
Q Consensus 584 WnE~f~f~~~~~~~~~L~i~V~D~d~~--------------------------------~~---~dd~lG~~~i~l~~~~ 628 (1016)
|+|.|.|++.+-....+++.+||+|.- .+ .|||+|...||+.++.
T Consensus 192 W~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP 271 (1103)
T KOG1328|consen 192 WSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIP 271 (1103)
T ss_pred hhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCC
Confidence 999999999777788999999999820 01 3899999999999987
Q ss_pred CCCceeEEEECCcCCc-CcccceEEEEEEEeecCCCcc
Q 001764 629 ISDLADVWIPLQGKLA-QACQSKLHLRIFLNNTKGSNV 665 (1016)
Q Consensus 629 ~~~~~~~w~~L~~~~~-~~~~g~l~l~~~~~~~~~~~~ 665 (1016)
.. +.+.||.|+.++. ...+|.++|++.+..+.+...
T Consensus 272 ~~-Gld~WFkLepRS~~S~VqG~~~LklwLsT~e~~~a 308 (1103)
T KOG1328|consen 272 PD-GLDQWFKLEPRSDKSKVQGQVKLKLWLSTKEEGRA 308 (1103)
T ss_pred cc-hHHHHhccCcccccccccceEEEEEEEeeeccccc
Confidence 54 5799999998654 345999999999876655443
No 210
>PLN02952 phosphoinositide phospholipase C
Probab=99.03 E-value=1.9e-09 Score=127.15 Aligned_cols=117 Identities=21% Similarity=0.249 Sum_probs=91.7
Q ss_pred eEEEEEEEEeecCCCC------CCCCCCCcEEEEEECCe-----eeeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEE
Q 001764 537 WLLTVALIKGDNLAAV------DSSGFCDPYVVFTCNGK-----SRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVY 605 (1016)
Q Consensus 537 ~~L~V~v~~A~~L~~~------d~~g~sDPyv~v~~~~~-----~~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~ 605 (1016)
..|.|+|+.|++|+.. +.....||||+|.+.|. +++|+++.++.||.|||+|.|.+..+.-..|+|.||
T Consensus 470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~ 549 (599)
T PLN02952 470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVR 549 (599)
T ss_pred ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEE
Confidence 4699999999997532 11233599999998763 379999999999999999999887665677999999
Q ss_pred EccCCCCCCceeeEEEEEceecCCCCceeEEEECCcCCcCc-ccceEEEEEEE
Q 001764 606 DFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQA-CQSKLHLRIFL 657 (1016)
Q Consensus 606 D~d~~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~~~~~~~-~~g~l~l~~~~ 657 (1016)
|+|. .+.++|+|++.+||..+..|. .|++|..+.+.. ....|.+++.+
T Consensus 550 D~D~-~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G~~l~~a~Llv~f~~ 598 (599)
T PLN02952 550 EYDM-SEKDDFGGQTCLPVSELRPGI---RSVPLHDKKGEKLKNVRLLMRFIF 598 (599)
T ss_pred ecCC-CCCCCeEEEEEcchhHhcCCc---eeEeCcCCCCCCCCCEEEEEEEEe
Confidence 9998 788999999999999998774 699998654432 34455555543
No 211
>PLN02270 phospholipase D alpha
Probab=99.02 E-value=1.8e-09 Score=129.25 Aligned_cols=121 Identities=17% Similarity=0.188 Sum_probs=100.5
Q ss_pred eEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEECCee-eeeecCCCC-CCCeeeEEEEEEeeCCC
Q 001764 537 WLLTVALIKGDNLAAVD------------------SSGFCDPYVVFTCNGKS-RTSSIKFQQ-CDPMWNEIFEYDAMDEP 596 (1016)
Q Consensus 537 ~~L~V~v~~A~~L~~~d------------------~~g~sDPyv~v~~~~~~-~~T~~~~~t-~nP~WnE~f~f~~~~~~ 596 (1016)
|.|.|+|++|++|+.++ ..+++||||.|.+++.+ .+|+++.+. .||.|||.|.+.+ ...
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~-ah~ 86 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYC-AHM 86 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEee-ccC
Confidence 46999999999998642 13578999999999888 799999885 6999999999965 444
Q ss_pred CCeEEEEEEEccCCCCCCceeeEEEEEceecCCCCceeEEEECCcCCcCcc--cceEEEEEEEeec
Q 001764 597 PSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQAC--QSKLHLRIFLNNT 660 (1016)
Q Consensus 597 ~~~L~i~V~D~d~~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~~~~~~~~--~g~l~l~~~~~~~ 660 (1016)
...+.|.|.|.|. ++.. +||.+.||+.++..+...+.||++.+..++.. ..+||+++.|...
T Consensus 87 ~~~v~f~vkd~~~-~g~~-~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 87 ASNIIFTVKDDNP-IGAT-LIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred cceEEEEEecCCc-cCce-EEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 6899999999998 6654 99999999999988888999999987655544 4588888887653
No 212
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.00 E-value=1.7e-09 Score=104.04 Aligned_cols=92 Identities=22% Similarity=0.269 Sum_probs=77.2
Q ss_pred EEEEEEEeecCCCCC--CCCC--CCcEEEEEECCe---eeeeecCCCCCC--CeeeEEEEEEeeCC--------------
Q 001764 539 LTVALIKGDNLAAVD--SSGF--CDPYVVFTCNGK---SRTSSIKFQQCD--PMWNEIFEYDAMDE-------------- 595 (1016)
Q Consensus 539 L~V~v~~A~~L~~~d--~~g~--sDPyv~v~~~~~---~~~T~~~~~t~n--P~WnE~f~f~~~~~-------------- 595 (1016)
|+|.|.+|+|++..+ ..|. +||||++.+.+. +++|.+..+++| |.||+.|.|++.-.
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 899999999976554 3664 999999998763 389999999999 99999999887431
Q ss_pred ---------CCCeEEEEEEEccCCCCCCceeeEEEEEceecCCCC
Q 001764 596 ---------PPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISD 631 (1016)
Q Consensus 596 ---------~~~~L~i~V~D~d~~~~~dd~lG~~~i~l~~~~~~~ 631 (1016)
....|.|+|||.|. +++||+||.++++|..+..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~-~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDK-FSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcc-cCCCCcceEEEEEhhhccccc
Confidence 23569999999999 999999999999999876543
No 213
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.00 E-value=2.2e-09 Score=103.16 Aligned_cols=91 Identities=32% Similarity=0.449 Sum_probs=77.6
Q ss_pred EEEEEEEEeecCCCCCC--CC--CCCcEEEEEECC---eEEEeeeccCCCC--CeeccEEEEEEeC--------------
Q 001764 2 KLVVRVIEARNIPAMDQ--NG--YSDPYVRLQLGR---QRFKTKVVRKSLS--PSWEEEFSFKVED-------------- 58 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~--~g--~~dPyv~v~~~~---~k~kTkvi~~t~n--P~WnE~f~f~v~~-------------- 58 (1016)
.|+|.|.+|++++..+. .| .+||||++.+.+ .+++|.+..+++| |.||+.|.|++..
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH 80 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence 38999999999765443 56 499999999964 5699999999999 9999999998743
Q ss_pred ----------CCCEEEEEEEecCCCCCCceeEEEEeeccccccc
Q 001764 59 ----------LKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDA 92 (1016)
Q Consensus 59 ----------~~~~L~v~V~D~d~~~~d~~lG~~~v~l~~l~~~ 92 (1016)
....|.++|||.|.+++|++||++.++|..+..+
T Consensus 81 ~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~ 124 (133)
T cd08374 81 FWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRP 124 (133)
T ss_pred ccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccc
Confidence 1468999999999999999999999999988643
No 214
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.98 E-value=2.5e-09 Score=125.75 Aligned_cols=118 Identities=20% Similarity=0.243 Sum_probs=94.7
Q ss_pred CeEEEEEEEEeecCCCC------CCCCCCCcEEEEEECCee-----eeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEE
Q 001764 536 GWLLTVALIKGDNLAAV------DSSGFCDPYVVFTCNGKS-----RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEV 604 (1016)
Q Consensus 536 ~~~L~V~v~~A~~L~~~------d~~g~sDPyv~v~~~~~~-----~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V 604 (1016)
..+|.|+|+.|++++.. +.....||||+|.+.|.. ++|++..++.||.|||+|+|.+..+.-..|+|.|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 34699999999987522 223357999999986533 7888999999999999999998766677899999
Q ss_pred EEccCCCCCCceeeEEEEEceecCCCCceeEEEECCcCCcCc-ccceEEEEEEE
Q 001764 605 YDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQA-CQSKLHLRIFL 657 (1016)
Q Consensus 605 ~D~d~~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~~~~~~~-~~g~l~l~~~~ 657 (1016)
+|+|. ...|||+|++.+|+..+..| -+.++|..+.+.. ...+|.+++.+
T Consensus 548 ~d~d~-~~~ddfiGQ~~lPv~~Lr~G---yR~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 548 HEHDI-NEKDDFGGQTCLPVSEIRQG---IHAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EECCC-CCCCCEEEEEEcchHHhhCc---cceEeccCCCcCCCCCCeeEEEEEe
Confidence 99998 78999999999999999876 4578997665544 35677777764
No 215
>PLN02952 phosphoinositide phospholipase C
Probab=98.98 E-value=5.5e-09 Score=123.20 Aligned_cols=116 Identities=26% Similarity=0.316 Sum_probs=90.7
Q ss_pred EEEEEEEEeecCCCC--C----CCCCCCcEEEEEEC-----CeEEEeeeccCCCCCeeccEEEEEEeCCC-CEEEEEEEe
Q 001764 2 KLVVRVIEARNIPAM--D----QNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVEDLK-DELVISVLD 69 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~--d----~~g~~dPyv~v~~~-----~~k~kTkvi~~t~nP~WnE~f~f~v~~~~-~~L~v~V~D 69 (1016)
+|.|+|+.|.+|+.. + .....||||+|.+- ..+.+|+++.++.||+|||+|.|.+..++ ..|+|.|||
T Consensus 471 ~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~D 550 (599)
T PLN02952 471 TLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVRE 550 (599)
T ss_pred eEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEEe
Confidence 689999999887532 1 12335999999984 35789999999999999999999986544 578999999
Q ss_pred cCCCCCCceeEEEEeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEEEE
Q 001764 70 EDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (1016)
Q Consensus 70 ~d~~~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~ 125 (1016)
+|..+.++|+|+..+|+..|.. +.+|++|.++.+..- ..-.|.+++.|
T Consensus 551 ~D~~~~ddfiGq~~lPv~~Lr~------GyR~VpL~~~~G~~l--~~a~Llv~f~~ 598 (599)
T PLN02952 551 YDMSEKDDFGGQTCLPVSELRP------GIRSVPLHDKKGEKL--KNVRLLMRFIF 598 (599)
T ss_pred cCCCCCCCeEEEEEcchhHhcC------CceeEeCcCCCCCCC--CCEEEEEEEEe
Confidence 9988889999999999999964 467999987765432 23455555554
No 216
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.98 E-value=1.7e-09 Score=131.08 Aligned_cols=133 Identities=20% Similarity=0.358 Sum_probs=101.7
Q ss_pred CccCC-CCCccchheeeehhhhhcCceehhhHHHHHHhhhhcCCCCCcccCCCCeEEEEEEEEeecCCCCC--CCCCCCc
Q 001764 484 EFVGL-DLPDSIGEFIVCGVLVLQGERFLQLISRFMQARKQKGSDHGVKAQGDGWLLTVALIKGDNLAAVD--SSGFCDP 560 (1016)
Q Consensus 484 ~~~~l-~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~L~V~v~~A~~L~~~d--~~g~sDP 560 (1016)
.+||| .+...++...++.+++.|+..-+.... .| .++ ....-|+|.|+|.+|++|...| .++..||
T Consensus 393 ~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~-~m------~~~----s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDp 461 (1227)
T COG5038 393 AIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQ-IM------AGD----SGTAIGVVEVKIKSAEGLKKSDSTINGTVDP 461 (1227)
T ss_pred cCccHHHHHHHHHHhhcCCeeeCCceEEEcHHH-hh------ccc----cCCeeEEEEEEEeeccCcccccccccCCCCc
Confidence 35555 455455555556666777776554332 11 111 1124578999999999999998 6899999
Q ss_pred EEEEEECCee-eeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCCCCceeeEEEEEceecCC
Q 001764 561 YVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDI 629 (1016)
Q Consensus 561 yv~v~~~~~~-~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~~dd~lG~~~i~l~~~~~ 629 (1016)
|+++.+.+.. .||+++++++||+|||+|-+.+ +...+.|.|+|||.+. +.+|+.+|.+.++|..+..
T Consensus 462 yit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~l-ns~~d~L~LslyD~n~-~~sd~vvG~~~l~L~~L~~ 529 (1227)
T COG5038 462 YITVTFSDRVIGKTRVKKNTLNPVWNETFYILL-NSFTDPLNLSLYDFNS-FKSDKVVGSTQLDLALLHQ 529 (1227)
T ss_pred eEEEEeccccCCccceeeccCCccccceEEEEe-cccCCceeEEEEeccc-cCCcceeeeEEechHHhhh
Confidence 9999987665 8999999999999999998854 4668899999999888 7899999999999877543
No 217
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.96 E-value=2.9e-09 Score=124.70 Aligned_cols=117 Identities=21% Similarity=0.366 Sum_probs=96.0
Q ss_pred EEEEEEEEeecCCCCCC----CCCCCcEEEEEECCee-----eeee-cCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEc
Q 001764 538 LLTVALIKGDNLAAVDS----SGFCDPYVVFTCNGKS-----RTSS-IKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDF 607 (1016)
Q Consensus 538 ~L~V~v~~A~~L~~~d~----~g~sDPyv~v~~~~~~-----~~T~-~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~ 607 (1016)
+|.|+|+.|++++..-. ...+||||.|++.|.+ .+|+ +..++-||.|+|+|+|.+..+.-..|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 69999999997755422 2468999999998765 6777 788999999999999999777678999999999
Q ss_pred cCCCCCCceeeEEEEEceecCCCCceeEEEECCcCCcCc-ccceEEEEEEEe
Q 001764 608 DGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQA-CQSKLHLRIFLN 658 (1016)
Q Consensus 608 d~~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~~~~~~~-~~g~l~l~~~~~ 658 (1016)
|. .++|||+|+.++|+..+..|- +-++|.++.|.. ...+|.+++.+.
T Consensus 697 d~-~~~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 DY-IGKDDFIGQTTLPVSELRQGY---RHVPLLSREGEALSSASLFVRIAIV 744 (746)
T ss_pred CC-CCcccccceeeccHHHhhCce---eeeeecCCCCccccceeEEEEEEEe
Confidence 99 788999999999999998764 557887654443 366788887765
No 218
>PLN02270 phospholipase D alpha
Probab=98.92 E-value=1.2e-08 Score=122.23 Aligned_cols=125 Identities=18% Similarity=0.378 Sum_probs=103.4
Q ss_pred EEEEEEEEeecCCCCC------------------CCCCCCcEEEEEECCeE-EEeeeccCC-CCCeeccEEEEEEeCCCC
Q 001764 2 KLVVRVIEARNIPAMD------------------QNGYSDPYVRLQLGRQR-FKTKVVRKS-LSPSWEEEFSFKVEDLKD 61 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d------------------~~g~~dPyv~v~~~~~k-~kTkvi~~t-~nP~WnE~f~f~v~~~~~ 61 (1016)
+|.|+|++|++|+..+ ..+.+||||.|.+++.+ .||+++.+. .||+|+|.|.+++...-.
T Consensus 9 ~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~~~ 88 (808)
T PLN02270 9 TLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHMAS 88 (808)
T ss_pred ceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccCcc
Confidence 4899999999998631 12568999999998876 799999884 699999999999977778
Q ss_pred EEEEEEEecCCCCCCceeEEEEeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEEEEEecCCC
Q 001764 62 ELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHNTSS 131 (1016)
Q Consensus 62 ~L~v~V~D~d~~~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~~~~~ 131 (1016)
.+.|+|.|.+.++ ..+||.+.||+.++..++ ....||++....++.. +....|++++.|.+...+
T Consensus 89 ~v~f~vkd~~~~g-~~~ig~~~~p~~~~~~g~---~i~~~~~~~~~~~~p~-~~~~~~~~~~~f~~~~~~ 153 (808)
T PLN02270 89 NIIFTVKDDNPIG-ATLIGRAYIPVEEILDGE---EVDRWVEILDNDKNPI-HGGSKIHVKLQYFEVTKD 153 (808)
T ss_pred eEEEEEecCCccC-ceEEEEEEEEHHHhcCCC---ccccEEeccCCCCCcC-CCCCEEEEEEEEEEcccC
Confidence 9999999999976 569999999999998644 3688999998776542 345699999999876443
No 219
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.90 E-value=1.3e-08 Score=119.93 Aligned_cols=116 Identities=24% Similarity=0.299 Sum_probs=92.6
Q ss_pred EEEEEEEEeecCCCC------CCCCCCCcEEEEEEC-----CeEEEeeeccCCCCCeeccEEEEEEeCCC-CEEEEEEEe
Q 001764 2 KLVVRVIEARNIPAM------DQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVEDLK-DELVISVLD 69 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~------d~~g~~dPyv~v~~~-----~~k~kTkvi~~t~nP~WnE~f~f~v~~~~-~~L~v~V~D 69 (1016)
+|.|+|+.+.+++.. +.....||||+|.+- ..+.+|++..++.||+|||+|.|.+.-++ ..|+|.|+|
T Consensus 470 ~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~d 549 (598)
T PLN02230 470 TLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVHE 549 (598)
T ss_pred EEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEEE
Confidence 689999999987521 222347999999983 34688998889999999999999986554 688999999
Q ss_pred cCCCCCCceeEEEEeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEEEE
Q 001764 70 EDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (1016)
Q Consensus 70 ~d~~~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~ 125 (1016)
+|...+++|+|+..+|+..|.. +.+.++|.++.+.. -....|.+++.+
T Consensus 550 ~d~~~~ddfiGQ~~lPv~~Lr~------GyR~V~L~~~~G~~--l~~~~Ll~~f~~ 597 (598)
T PLN02230 550 HDINEKDDFGGQTCLPVSEIRQ------GIHAVPLFNRKGVK--YSSTRLLMRFEF 597 (598)
T ss_pred CCCCCCCCEEEEEEcchHHhhC------ccceEeccCCCcCC--CCCCeeEEEEEe
Confidence 9988899999999999999954 56789999877643 234577777765
No 220
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.88 E-value=1.3e-08 Score=119.78 Aligned_cols=117 Identities=18% Similarity=0.224 Sum_probs=92.5
Q ss_pred eEEEEEEEEeecCC----CC--CCCCCCCcEEEEEECCe-----eeeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEE
Q 001764 537 WLLTVALIKGDNLA----AV--DSSGFCDPYVVFTCNGK-----SRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVY 605 (1016)
Q Consensus 537 ~~L~V~v~~A~~L~----~~--d~~g~sDPyv~v~~~~~-----~~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~ 605 (1016)
..|.|+|+.|++++ .. +.....||||+|.+.|. +++|+++.++.||.|||+|+|.+..+.-..|+|.|+
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~ 531 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVH 531 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEE
Confidence 46999999999853 21 22345799999998653 378999999999999999999887665678999999
Q ss_pred EccCCCCCCceeeEEEEEceecCCCCceeEEEECCcCCcCc-ccceEEEEEEE
Q 001764 606 DFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQA-CQSKLHLRIFL 657 (1016)
Q Consensus 606 D~d~~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~~~~~~~-~~g~l~l~~~~ 657 (1016)
|+|. ...|+|+|++.+|+..+..| -+.++|..+.+.. ...+|.+++.+
T Consensus 532 d~D~-~~~ddfigq~~lPv~~Lr~G---yR~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 532 EYDM-SEKDDFGGQTCLPVWELSQG---IRAFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred ECCC-CCCCcEEEEEEcchhhhhCc---cceEEccCCCcCCCCCeeEEEEEEe
Confidence 9998 78899999999999999876 4678997655443 35567766654
No 221
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.86 E-value=2.6e-08 Score=117.24 Aligned_cols=116 Identities=23% Similarity=0.304 Sum_probs=91.9
Q ss_pred EEEEEEEEeecCC--CC----CCCCCCCcEEEEEEC-----CeEEEeeeccCCCCCeeccEEEEEEeCCC-CEEEEEEEe
Q 001764 2 KLVVRVIEARNIP--AM----DQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVEDLK-DELVISVLD 69 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~--~~----d~~g~~dPyv~v~~~-----~~k~kTkvi~~t~nP~WnE~f~f~v~~~~-~~L~v~V~D 69 (1016)
+|+|+|+.+.+++ .. +.....||||+|.+. ..+.+|+++.++.||+|||+|.|.+.-++ ..|+|.|||
T Consensus 453 ~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~d 532 (581)
T PLN02222 453 TLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVHE 532 (581)
T ss_pred eEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEEE
Confidence 6899999998743 21 123457999999984 35689999999999999999999986554 688999999
Q ss_pred cCCCCCCceeEEEEeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEEEE
Q 001764 70 EDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (1016)
Q Consensus 70 ~d~~~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~ 125 (1016)
+|....++|+|+..+|+..|.. +.+.++|.++.+.. -....|.+++.+
T Consensus 533 ~D~~~~ddfigq~~lPv~~Lr~------GyR~V~L~~~~g~~--l~~a~Lfv~~~~ 580 (581)
T PLN02222 533 YDMSEKDDFGGQTCLPVWELSQ------GIRAFPLHSRKGEK--YKSVKLLVKVEF 580 (581)
T ss_pred CCCCCCCcEEEEEEcchhhhhC------ccceEEccCCCcCC--CCCeeEEEEEEe
Confidence 9988889999999999999964 57789998877642 234577777664
No 222
>PLN02228 Phosphoinositide phospholipase C
Probab=98.84 E-value=2.3e-08 Score=117.41 Aligned_cols=119 Identities=17% Similarity=0.219 Sum_probs=95.6
Q ss_pred eEEEEEEEEeecCCC---CC---CCCCCCcEEEEEECCee-----eeeecCCCCCCCee-eEEEEEEeeCCCCCeEEEEE
Q 001764 537 WLLTVALIKGDNLAA---VD---SSGFCDPYVVFTCNGKS-----RTSSIKFQQCDPMW-NEIFEYDAMDEPPSMLDVEV 604 (1016)
Q Consensus 537 ~~L~V~v~~A~~L~~---~d---~~g~sDPyv~v~~~~~~-----~~T~~~~~t~nP~W-nE~f~f~~~~~~~~~L~i~V 604 (1016)
..|+|+|+.|++|+. .+ .....||||+|.+.|.. ++|+++.++.||.| ||+|+|.+..+.-..|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 369999999998732 11 22347999999986543 78999999999999 99999998766567899999
Q ss_pred EEccCCCCCCceeeEEEEEceecCCCCceeEEEECCcCCcCc-ccceEEEEEEEee
Q 001764 605 YDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQA-CQSKLHLRIFLNN 659 (1016)
Q Consensus 605 ~D~d~~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~~~~~~~-~~g~l~l~~~~~~ 659 (1016)
+|+|. .+.|+|+|++.+|+..+..| -+.++|..+.+.. ...+|.+++.+..
T Consensus 511 ~D~d~-~~~d~figq~~lPv~~Lr~G---YR~VpL~~~~G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 511 QDYDN-DTQNDFAGQTCLPLPELKSG---VRAVRLHDRAGKAYKNTRLLVSFALDP 562 (567)
T ss_pred EeCCC-CCCCCEEEEEEcchhHhhCC---eeEEEccCCCCCCCCCeEEEEEEEEcC
Confidence 99998 78899999999999999876 5678997665544 4667888888763
No 223
>PLN02228 Phosphoinositide phospholipase C
Probab=98.83 E-value=3.7e-08 Score=115.64 Aligned_cols=118 Identities=19% Similarity=0.321 Sum_probs=95.0
Q ss_pred EEEEEEEEeecCCC---CC---CCCCCCcEEEEEEC-----CeEEEeeeccCCCCCee-ccEEEEEEeCCC-CEEEEEEE
Q 001764 2 KLVVRVIEARNIPA---MD---QNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSW-EEEFSFKVEDLK-DELVISVL 68 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~---~d---~~g~~dPyv~v~~~-----~~k~kTkvi~~t~nP~W-nE~f~f~v~~~~-~~L~v~V~ 68 (1016)
+|.|+|++|.+|+. .+ .....||||+|.+. ..+++|+++.++.||+| ||+|.|.+..++ ..|+|.|+
T Consensus 432 ~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V~ 511 (567)
T PLN02228 432 TLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKVQ 511 (567)
T ss_pred eEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEEE
Confidence 69999999998732 11 12347999999983 34689999998999999 999999996554 68899999
Q ss_pred ecCCCCCCceeEEEEeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEEEEEe
Q 001764 69 DEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSH 127 (1016)
Q Consensus 69 D~d~~~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~ 127 (1016)
|+|..+.++|+|+..+|+..|.. +.+.++|.+..+.. -..++|.+++.+.+
T Consensus 512 D~d~~~~d~figq~~lPv~~Lr~------GYR~VpL~~~~G~~--l~~atLfv~~~~~~ 562 (567)
T PLN02228 512 DYDNDTQNDFAGQTCLPLPELKS------GVRAVRLHDRAGKA--YKNTRLLVSFALDP 562 (567)
T ss_pred eCCCCCCCCEEEEEEcchhHhhC------CeeEEEccCCCCCC--CCCeEEEEEEEEcC
Confidence 99988889999999999999954 57789998877642 24578999998864
No 224
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.80 E-value=2.3e-08 Score=117.37 Aligned_cols=117 Identities=25% Similarity=0.392 Sum_probs=94.5
Q ss_pred EEEEEEEEeecCCCCCC----CCCCCcEEEEEECC-----eEEEeeecc-CCCCCeeccEEEEEEeCCC-CEEEEEEEec
Q 001764 2 KLVVRVIEARNIPAMDQ----NGYSDPYVRLQLGR-----QRFKTKVVR-KSLSPSWEEEFSFKVEDLK-DELVISVLDE 70 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~----~g~~dPyv~v~~~~-----~k~kTkvi~-~t~nP~WnE~f~f~v~~~~-~~L~v~V~D~ 70 (1016)
+|+|+|+.+.++++... ...+||||.|++.+ .+.+|++++ ++.||.|+|+|.|.+..++ ..|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 59999999997654432 24489999999843 469999555 5799999999999997665 6789999999
Q ss_pred CCCCCCceeEEEEeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEEEEE
Q 001764 71 DKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (1016)
Q Consensus 71 d~~~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~ 126 (1016)
|..++|+|+|+..+|+..|.. +.+.++|.++.|+. -...+|.+++.+.
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~------GyRhVpL~~~~G~~--~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQ------GYRHVPLLSREGEA--LSSASLFVRIAIV 744 (746)
T ss_pred CCCCcccccceeeccHHHhhC------ceeeeeecCCCCcc--ccceeEEEEEEEe
Confidence 999999999999999999954 57789999876652 3467888888765
No 225
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.79 E-value=1.1e-08 Score=114.01 Aligned_cols=125 Identities=14% Similarity=0.363 Sum_probs=99.8
Q ss_pred eEEEEEEEEeecCCCCCCC-CCCCcEEEEEECCeeeeeecCCCCCCCeee-EEEEEEeeC--CCCCeEEEEEEEccCCCC
Q 001764 537 WLLTVALIKGDNLAAVDSS-GFCDPYVVFTCNGKSRTSSIKFQQCDPMWN-EIFEYDAMD--EPPSMLDVEVYDFDGPFN 612 (1016)
Q Consensus 537 ~~L~V~v~~A~~L~~~d~~-g~sDPyv~v~~~~~~~~T~~~~~t~nP~Wn-E~f~f~~~~--~~~~~L~i~V~D~d~~~~ 612 (1016)
|.|-|+|..|++||.||.. ...|.||.+.+++..++|.+-.+++||.|| ++|.|++.+ -.++.|.|+++|+|. ++
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt-ys 81 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT-YS 81 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc-cc
Confidence 4589999999999999974 467999999999999999999999999999 899998844 246789999999999 99
Q ss_pred CCceeeEEEEEceecCC----------CCceeEEEECCcCCcCcccceEEEEEEEeecCCC
Q 001764 613 EATSLGHAEINFVKSDI----------SDLADVWIPLQGKLAQACQSKLHLRIFLNNTKGS 663 (1016)
Q Consensus 613 ~dd~lG~~~i~l~~~~~----------~~~~~~w~~L~~~~~~~~~g~l~l~~~~~~~~~~ 663 (1016)
.+|-||.+.|++..+.. +.....|+|+...- ....|+|.+-+.+..-++.
T Consensus 82 andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-hgirgeinvivkvdlfndl 141 (1169)
T KOG1031|consen 82 ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-HGIRGEINVIVKVDLFNDL 141 (1169)
T ss_pred cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-ccccceeEEEEEEeehhhh
Confidence 99999999999877432 22347899997531 1235677776665444443
No 226
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.76 E-value=2.8e-08 Score=115.04 Aligned_cols=124 Identities=19% Similarity=0.292 Sum_probs=98.0
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee------eeeecCCCCCCCeee-EEEEEEeeCCCCCeEEEEEEEcc
Q 001764 536 GWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKS------RTSSIKFQQCDPMWN-EIFEYDAMDEPPSMLDVEVYDFD 608 (1016)
Q Consensus 536 ~~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~~------~~T~~~~~t~nP~Wn-E~f~f~~~~~~~~~L~i~V~D~d 608 (1016)
...|.|.|+.|+.|+... .|..-|||+|.+.|.. ++|.++.+++||+|| |.|+|++..+.-..|++.|+|.|
T Consensus 1064 p~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeD 1142 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEED 1142 (1267)
T ss_pred ceEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccc
Confidence 356999999999999654 4456799999986543 788899999999999 99999998887888999999999
Q ss_pred CCCCCCceeeEEEEEceecCCCCceeEEEECCcCC-cCcccceEEEEEEEeecCCCc
Q 001764 609 GPFNEATSLGHAEINFVKSDISDLADVWIPLQGKL-AQACQSKLHLRIFLNNTKGSN 664 (1016)
Q Consensus 609 ~~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~~~~-~~~~~g~l~l~~~~~~~~~~~ 664 (1016)
. ++...|||++..|+..+..+ -+-+||...- ..-.-..|.+.+.+-+..+..
T Consensus 1143 m-fs~~~FiaqA~yPv~~ik~G---fRsVpLkN~ySEdlELaSLLv~i~m~~~~~~~ 1195 (1267)
T KOG1264|consen 1143 M-FSDPNFLAQATYPVKAIKSG---FRSVPLKNGYSEDLELASLLVFIEMRPVLESE 1195 (1267)
T ss_pred c-cCCcceeeeeecchhhhhcc---ceeeecccCchhhhhhhhheeeeEeccccCcc
Confidence 9 88888999999999998865 4567886432 222345666777765555444
No 227
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.73 E-value=3.5e-09 Score=121.08 Aligned_cols=94 Identities=26% Similarity=0.419 Sum_probs=84.2
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee-------eeeecCCCCCCCeeeEEEEEEeeCCCCC----eEEEE
Q 001764 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKS-------RTSSIKFQQCDPMWNEIFEYDAMDEPPS----MLDVE 603 (1016)
Q Consensus 535 ~~~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~~-------~~T~~~~~t~nP~WnE~f~f~~~~~~~~----~L~i~ 603 (1016)
....|.|.|+.|+++.+-|.+|.|||||+|.+..+. .+|+++..|+||+|+|+|+|.+..+++. -+.++
T Consensus 945 n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FT 1024 (1103)
T KOG1328|consen 945 NAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFT 1024 (1103)
T ss_pred cccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEE
Confidence 445688999999999999999999999999998654 7999999999999999999999776654 49999
Q ss_pred EEEccCCCCCCceeeEEEEEceecCC
Q 001764 604 VYDFDGPFNEATSLGHAEINFVKSDI 629 (1016)
Q Consensus 604 V~D~d~~~~~dd~lG~~~i~l~~~~~ 629 (1016)
|+|+|- ++.+||-|++.+.|.++..
T Consensus 1025 VMDHD~-L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1025 VMDHDY-LRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred eeccce-ecccccchHHHHhhCCCCC
Confidence 999998 8999999999999988653
No 228
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.69 E-value=7.5e-08 Score=111.57 Aligned_cols=119 Identities=24% Similarity=0.399 Sum_probs=92.8
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----Ce-EEEeeeccCCCCCeec-cEEEEEEeCCC-CEEEEEEEecCC
Q 001764 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLG-----RQ-RFKTKVVRKSLSPSWE-EEFSFKVEDLK-DELVISVLDEDK 72 (1016)
Q Consensus 1 m~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~-----~~-k~kTkvi~~t~nP~Wn-E~f~f~v~~~~-~~L~v~V~D~d~ 72 (1016)
|+|.|.|+.||.|+.... |-+-|||.|.+- .. .++|.++.|.+||+|| |.|+|.+.++. ..|++.|+|.|.
T Consensus 1065 ~~lsv~vigaRHL~k~gr-~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLGR-SIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCCC-CccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 689999999999995543 456799999983 23 4556666788999999 99999997665 789999999999
Q ss_pred CCCCceeEEEEeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEEEEEec
Q 001764 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (1016)
Q Consensus 73 ~~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~~ 128 (1016)
++...|||++..|+..+.. +.+-++|... .++.-...+|.+.+...+.
T Consensus 1144 fs~~~FiaqA~yPv~~ik~------GfRsVpLkN~--ySEdlELaSLLv~i~m~~~ 1191 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKS------GFRSVPLKNG--YSEDLELASLLVFIEMRPV 1191 (1267)
T ss_pred cCCcceeeeeecchhhhhc------cceeeecccC--chhhhhhhhheeeeEeccc
Confidence 9988899999999999854 4566777653 2333456777777776544
No 229
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.69 E-value=5.9e-08 Score=87.50 Aligned_cols=83 Identities=20% Similarity=0.306 Sum_probs=69.7
Q ss_pred EEEEEEEeecCCCCC---CCCCCCcEEEEEECCe-eeeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCCCC
Q 001764 539 LTVALIKGDNLAAVD---SSGFCDPYVVFTCNGK-SRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEA 614 (1016)
Q Consensus 539 L~V~v~~A~~L~~~d---~~g~sDPyv~v~~~~~-~~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~~d 614 (1016)
|+|+|..|+|+...+ ..+.+||||.|.+++. +.+|+. +.||.|||+|.|++ +....+.|.|||... +..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~V--dk~nEiel~VyDk~~--~~~ 73 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPV--EKNNEEEVIVYDKGG--DQP 73 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEe--cCCcEEEEEEEeCCC--Cee
Confidence 689999999998887 5788999999999988 588887 48999999999988 347899999999875 455
Q ss_pred ceeeEEEEEceecC
Q 001764 615 TSLGHAEINFVKSD 628 (1016)
Q Consensus 615 d~lG~~~i~l~~~~ 628 (1016)
-.||-.-+.++++.
T Consensus 74 ~Pi~llW~~~sdi~ 87 (109)
T cd08689 74 VPVGLLWLRLSDIA 87 (109)
T ss_pred cceeeehhhHHHHH
Confidence 57888888877754
No 230
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.66 E-value=4.9e-08 Score=108.93 Aligned_cols=121 Identities=30% Similarity=0.579 Sum_probs=102.0
Q ss_pred EEEEEEEEeecCCCCCCC-CCCCcEEEEEECCeEEEeeeccCCCCCeeccE-EEEEEeCC---CCEEEEEEEecCCCCCC
Q 001764 2 KLVVRVIEARNIPAMDQN-GYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEE-FSFKVEDL---KDELVISVLDEDKYFND 76 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~-g~~dPyv~v~~~~~k~kTkvi~~t~nP~WnE~-f~f~v~~~---~~~L~v~V~D~d~~~~d 76 (1016)
+|.|+|..||+||.+|+. ...|.||.+.+++..++|.+..+++||.||-. |.|++.+. +..|.|.+.|+|.++.+
T Consensus 4 kl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysan 83 (1169)
T KOG1031|consen 4 KLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSAN 83 (1169)
T ss_pred cceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccccc
Confidence 588999999999999984 45899999999999999999999999999965 89999543 57899999999999999
Q ss_pred ceeEEEEeecccccccC-------CCCCccEEEEccCCCCCCCCCcceEEEEEEEEE
Q 001764 77 DFVGFLKIPVSRVFDAD-------NKSLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (1016)
Q Consensus 77 ~~lG~~~v~l~~l~~~~-------~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~ 126 (1016)
+-||.+.|++..+...+ .+.....|+++.+.-. ..+|+|.+-+...
T Consensus 84 daigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtih----girgeinvivkvd 136 (1169)
T KOG1031|consen 84 DAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIH----GIRGEINVIVKVD 136 (1169)
T ss_pred cccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecc----cccceeEEEEEEe
Confidence 99999999998876322 2233568999998653 5789999888764
No 231
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.65 E-value=1e-07 Score=85.92 Aligned_cols=84 Identities=25% Similarity=0.400 Sum_probs=70.3
Q ss_pred EEEEEEEeecCCCCC---CCCCCCcEEEEEECCe-EEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCCCCCce
Q 001764 3 LVVRVIEARNIPAMD---QNGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDF 78 (1016)
Q Consensus 3 L~V~V~~Ar~L~~~d---~~g~~dPyv~v~~~~~-k~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~v~V~D~d~~~~d~~ 78 (1016)
|.|+|..||++.-.+ ..+.+||||.+.+++. +.||++ +.||.|||+|.|++. ....+.+.|||... ...-.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd-k~nEiel~VyDk~~-~~~~P 75 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE-KNNEEEVIVYDKGG-DQPVP 75 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEec-CCcEEEEEEEeCCC-Ceecc
Confidence 679999999998777 5678999999999876 899988 479999999999994 57799999999865 44456
Q ss_pred eEEEEeecccccc
Q 001764 79 VGFLKIPVSRVFD 91 (1016)
Q Consensus 79 lG~~~v~l~~l~~ 91 (1016)
+|..=++++++..
T Consensus 76 i~llW~~~sdi~E 88 (109)
T cd08689 76 VGLLWLRLSDIAE 88 (109)
T ss_pred eeeehhhHHHHHH
Confidence 8888788887753
No 232
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=2e-08 Score=106.68 Aligned_cols=158 Identities=23% Similarity=0.371 Sum_probs=119.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEE--eC--CCCEEEEEEEecCC
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKV--ED--LKDELVISVLDEDK 72 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~-----~k~kTkvi~~t~nP~WnE~f~f~v--~~--~~~~L~v~V~D~d~ 72 (1016)
.+.+++..|++|.+++.++..|||+.+.++. .+.+|++..+++||.|+|+..... .+ ....+++.|.|.+.
T Consensus 94 ~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~ 173 (362)
T KOG1013|consen 94 MLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDNDK 173 (362)
T ss_pred hcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCcc
Confidence 3789999999999999999999999999863 358889999999999999877765 21 13577889999999
Q ss_pred CCCCceeEEEEeecccccccCCCCCccEEEE--ccCCCCC-CCCCcceEEEEEEEEEecCCCCCccCCCCCCCccccCCC
Q 001764 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHS--LQPKNKK-SKNKDCGEILLTISFSHNTSSADFNINSDPLDQLKTTES 149 (1016)
Q Consensus 73 ~~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~--L~~~~~~-~~~~~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (1016)
+..++++|+.++++..+...+... ...|+. +...... .....+|+|.+++.|.... +.+.+..++|.+.
T Consensus 174 ~~~~~sqGq~r~~lkKl~p~q~k~-f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~-------~~l~vt~iRc~~l 245 (362)
T KOG1013|consen 174 KTHNESQGQSRVSLKKLKPLQRKS-FNICLEKSLPSERADRDEDEERGAILISLAYSSTT-------PGLIVTIIRCSHL 245 (362)
T ss_pred cccccCcccchhhhhccChhhcch-hhhhhhccCCcccccccchhhccceeeeeccCcCC-------CceEEEEEEeeee
Confidence 999999999999999886544321 223332 2211111 1125689999999986432 3356777899999
Q ss_pred CCCCCCCCCCCCCCCCcc
Q 001764 150 PKRSFSGPSNAPSPVRVE 167 (1016)
Q Consensus 150 ~~~~~~~~s~~~s~~~~~ 167 (1016)
.+++++|+|+++...-..
T Consensus 246 ~ssDsng~sDpyvS~~l~ 263 (362)
T KOG1013|consen 246 ASSDSNGYSDPYVSQRLS 263 (362)
T ss_pred eccccCCCCCccceeecC
Confidence 999999999998666554
No 233
>PLN02352 phospholipase D epsilon
Probab=98.40 E-value=1.8e-06 Score=103.75 Aligned_cols=116 Identities=14% Similarity=0.183 Sum_probs=87.5
Q ss_pred eEEEEEEEEeecCCCC----CCC-CCCCcEEEEEECCee-eeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCC
Q 001764 537 WLLTVALIKGDNLAAV----DSS-GFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGP 610 (1016)
Q Consensus 537 ~~L~V~v~~A~~L~~~----d~~-g~sDPyv~v~~~~~~-~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~ 610 (1016)
|.|.++|++|+-+... +.. ...||||.|.+++.+ .+| .+..||.|||.|.+.+.......+.|.|.| .
T Consensus 10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~--~- 83 (758)
T PLN02352 10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT--K- 83 (758)
T ss_pred cceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec--C-
Confidence 5799999999843222 111 123999999999887 577 556699999999997744433689999977 2
Q ss_pred CCCCceeeEEEEEceecCCCCc-eeEEEECCcCCcCcccc-eEEEEEEEeecC
Q 001764 611 FNEATSLGHAEINFVKSDISDL-ADVWIPLQGKLAQACQS-KLHLRIFLNNTK 661 (1016)
Q Consensus 611 ~~~dd~lG~~~i~l~~~~~~~~-~~~w~~L~~~~~~~~~g-~l~l~~~~~~~~ 661 (1016)
..+||.+.||+.++..+.. .+.||++.+..++...| +||+++.|....
T Consensus 84 ---~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 133 (758)
T PLN02352 84 ---CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAE 133 (758)
T ss_pred ---CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhh
Confidence 3699999999999887755 89999998766555544 888888876443
No 234
>PLN02352 phospholipase D epsilon
Probab=98.19 E-value=1.2e-05 Score=96.80 Aligned_cols=118 Identities=14% Similarity=0.231 Sum_probs=89.7
Q ss_pred EEEEEEEEeecCCCC----CC-CCCCCcEEEEEECCeE-EEeeeccCCCCCeeccEEEEEEeCCC-CEEEEEEEecCCCC
Q 001764 2 KLVVRVIEARNIPAM----DQ-NGYSDPYVRLQLGRQR-FKTKVVRKSLSPSWEEEFSFKVEDLK-DELVISVLDEDKYF 74 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~----d~-~g~~dPyv~v~~~~~k-~kTkvi~~t~nP~WnE~f~f~v~~~~-~~L~v~V~D~d~~~ 74 (1016)
+|.++|.+|+-+... +. ....||||.|.+++.+ .|| .+..||+|+|.|.+++...- ..+.|+|.|
T Consensus 11 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~----- 82 (758)
T PLN02352 11 TLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT----- 82 (758)
T ss_pred ceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec-----
Confidence 589999999843221 11 1123999999998776 577 56669999999999995554 789999998
Q ss_pred CCceeEEEEeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEEEEEecCCC
Q 001764 75 NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHNTSS 131 (1016)
Q Consensus 75 ~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~~~~~ 131 (1016)
...+||.+.+|+.++..++. ....||++....++.. . ...|++++.|.+...+
T Consensus 83 ~~~~ig~~~~p~~~~~~g~~--~~~~~~~~~~~~~~p~-~-~~~~~~~~~~~~~~~~ 135 (758)
T PLN02352 83 KCSILGRFHIQAHQIVTEAS--FINGFFPLIMENGKPN-P-ELKLRFMLWFRPAELE 135 (758)
T ss_pred CCeEEEEEEEEHHHhhCCCc--ccceEEEcccCCCCCC-C-CCEEEEEEEEEEhhhC
Confidence 26799999999999986432 2678999998877643 2 2699999999877554
No 235
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.93 E-value=5.2e-06 Score=99.59 Aligned_cols=87 Identities=29% Similarity=0.509 Sum_probs=78.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE--EEeeeccCCCCCeeccEEEEEEe-CCCCEEEEEEEecCCCCCCce
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQR--FKTKVVRKSLSPSWEEEFSFKVE-DLKDELVISVLDEDKYFNDDF 78 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~~k--~kTkvi~~t~nP~WnE~f~f~v~-~~~~~L~v~V~D~d~~~~d~~ 78 (1016)
.++|+|++|-+|.+.|.+|.+|||+.+.+|++. -++..+.+++||+|++.|.+... +....|.+.|||+|.+++|+.
T Consensus 614 LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~ 693 (1105)
T KOG1326|consen 614 LVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEK 693 (1105)
T ss_pred eEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccch
Confidence 368999999999999999999999999999876 77788999999999999998874 446788999999999999999
Q ss_pred eEEEEeeccc
Q 001764 79 VGFLKIPVSR 88 (1016)
Q Consensus 79 lG~~~v~l~~ 88 (1016)
+|+..+.|..
T Consensus 694 iget~iDLEn 703 (1105)
T KOG1326|consen 694 IGETTIDLEN 703 (1105)
T ss_pred hhceehhhhh
Confidence 9999998754
No 236
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.78 E-value=2e-05 Score=95.53 Aligned_cols=102 Identities=29% Similarity=0.461 Sum_probs=84.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEE---eC-CCCEEEEEEEecCC
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKV---ED-LKDELVISVLDEDK 72 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~-----~k~kTkvi~~t~nP~WnE~f~f~v---~~-~~~~L~v~V~D~d~ 72 (1016)
+|.|-|.-|++|+-...+..+||||+.++.. .|+||+++.+|.||.|||.+.+.- .. ..+.|.++||..+.
T Consensus 1525 ~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~ 1604 (1639)
T KOG0905|consen 1525 TLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGG 1604 (1639)
T ss_pred eEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecccc
Confidence 5788889999997666566799999999963 369999999999999999998873 22 24799999999999
Q ss_pred CCCCceeEEEEeecccccccCCCCCccEEEEccC
Q 001764 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (1016)
Q Consensus 73 ~~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~ 106 (1016)
+..+.|+|.+.+||.++...+ ....||.|..
T Consensus 1605 ~~en~~lg~v~i~L~~~~l~k---E~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1605 LLENVFLGGVNIPLLKVDLLK---ESVGWYNLGA 1635 (1639)
T ss_pred eeeeeeeeeeecchhhcchhh---hhcceeeccc
Confidence 999999999999999985322 2458999975
No 237
>PLN02964 phosphatidylserine decarboxylase
Probab=97.69 E-value=5.5e-05 Score=90.83 Aligned_cols=93 Identities=13% Similarity=0.261 Sum_probs=76.7
Q ss_pred cCCCCeEEEEEEEEeecCCCCCCCCCCCcEEE-EEECCeeeeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCC
Q 001764 532 AQGDGWLLTVALIKGDNLAAVDSSGFCDPYVV-FTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGP 610 (1016)
Q Consensus 532 ~~~~~~~L~V~v~~A~~L~~~d~~g~sDPyv~-v~~~~~~~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~ 610 (1016)
+..-.|++.+++++|+ |+ ..|||.. +++|.+.++|.+.++|+||+||+...|.+.+....-.++.|||++.
T Consensus 49 ~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~- 120 (644)
T PLN02964 49 AEDFSGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNR- 120 (644)
T ss_pred cccccCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCC-
Confidence 3335688999999998 44 3688665 6688888999999999999999999998866655667999999999
Q ss_pred CCCCceeeEEEEEceecCCCCc
Q 001764 611 FNEATSLGHAEINFVKSDISDL 632 (1016)
Q Consensus 611 ~~~dd~lG~~~i~l~~~~~~~~ 632 (1016)
++.++++|.++++|.++...+.
T Consensus 121 ~s~n~lv~~~e~~~t~f~~kqi 142 (644)
T PLN02964 121 LSKNTLVGYCELDLFDFVTQEP 142 (644)
T ss_pred CCHHHhhhheeecHhhccHHHH
Confidence 9999999999998877655443
No 238
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=4.9e-05 Score=81.42 Aligned_cols=85 Identities=32% Similarity=0.476 Sum_probs=73.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeCC---CCEEEEEEEecCCC
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDEDKY 73 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~-----~k~kTkvi~~t~nP~WnE~f~f~v~~~---~~~L~v~V~D~d~~ 73 (1016)
.|.|+++++..|..+|.+|-+||||+..+.. .+++|.+.++++||.+|++|.|.+.+. ...+.|.|||.+..
T Consensus 234 ~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G 313 (362)
T KOG1013|consen 234 GLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIG 313 (362)
T ss_pred ceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCC
Confidence 3789999999999999999999999999852 368999999999999999999998543 46899999999997
Q ss_pred CCCceeEEEEeec
Q 001764 74 FNDDFVGFLKIPV 86 (1016)
Q Consensus 74 ~~d~~lG~~~v~l 86 (1016)
+.++++|-+...+
T Consensus 314 ~s~d~~GG~~~g~ 326 (362)
T KOG1013|consen 314 KSNDSIGGSMLGG 326 (362)
T ss_pred cCccCCCcccccc
Confidence 7889998766544
No 239
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.63 E-value=4.6e-05 Score=92.58 Aligned_cols=105 Identities=25% Similarity=0.340 Sum_probs=87.3
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----eeeeecCCCCCCCeeeEEEEEEeeC---CCCCeEEEEEEEc
Q 001764 536 GWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGK-----SRTSSIKFQQCDPMWNEIFEYDAMD---EPPSMLDVEVYDF 607 (1016)
Q Consensus 536 ~~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~-----~~~T~~~~~t~nP~WnE~f~f~~~~---~~~~~L~i~V~D~ 607 (1016)
.++|+|-|.-|++|+-..-+...||||+.++-.. ++||+++.+|.||.+||..+.+-.+ ...++|.+.||..
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 4678999999999976665678999999998532 2899999999999999999876322 2346899999999
Q ss_pred cCCCCCCceeeEEEEEceecCCCCceeEEEECCc
Q 001764 608 DGPFNEATSLGHAEINFVKSDISDLADVWIPLQG 641 (1016)
Q Consensus 608 d~~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~~ 641 (1016)
+. +..+.++|.+.|+|.++........||+|..
T Consensus 1603 ~~-~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1603 GG-LLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred cc-eeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence 98 8889999999999999887766679999953
No 240
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=97.24 E-value=0.0002 Score=83.34 Aligned_cols=105 Identities=20% Similarity=0.219 Sum_probs=81.2
Q ss_pred cCCccccceeccCCCcccccccceeceeee---eccccceeeeeccEEEEeeccCCceEEEEEecccceEEEEcCCcccC
Q 001764 685 SPQTNSAFQKLFGLPPEEFLINDFTCHLKR---KMLLQGRLFLSARIIGFHANLFGHKTNFFFLWEDIEDIQVLPPSLSS 761 (1016)
Q Consensus 685 s~~~~~~f~~~F~l~~~E~l~~~~~c~~~~---~~~~~Grlyis~~~~cF~s~~~g~~t~~~i~~~dI~~i~k~~~~~~~ 761 (1016)
.+.++++| ..|+|| |.|..+-.|.++. ....+|+||+|.+++||.|...+. +.+++|+..|..|++.. .-+.
T Consensus 6 ar~~s~~f-~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~~-c~~~~Pl~~vr~ve~~~-~ss~ 80 (671)
T KOG4347|consen 6 ARLKSEDF-AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEWL-CSFITPLLAVRSVERLD-DSSL 80 (671)
T ss_pred hhhccccc-ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCccc-ceEeeehhhhhhhhccC-cccc
Confidence 35667889 889999 9999999999977 345789999999999999988764 89999999999999988 2221
Q ss_pred CCCCeEEEEEeecCCCCCCCCceeeccCCceEEEeccCcCHHHHHHHHHHH
Q 001764 762 MGSPVIVMTLRQGRGMDARHGAKTQDEEGRLKFHFHSFVSYNVAHRTIMAL 812 (1016)
Q Consensus 762 ~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~f~sf~~rd~~~~~i~~~ 812 (1016)
+.+ .+.+.+.+...+.|..+..|+..+.-+..+
T Consensus 81 ~~~------------------~i~~~~~~~~~~~f~~~~~r~~~~~k~~~~ 113 (671)
T KOG4347|consen 81 FTQ------------------LISLFTSNMVGMRFGGLTERLKLLSKLHLP 113 (671)
T ss_pred chh------------------hhHHhhcCcceEEecchhhHHHHHHHHhch
Confidence 221 122223355689999999999887665543
No 241
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.0004 Score=75.81 Aligned_cols=105 Identities=26% Similarity=0.362 Sum_probs=86.6
Q ss_pred EEEEEEEEeecCCCCCCC-CCCCcEEEEEECC-----eEEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEE-ecCCCC
Q 001764 2 KLVVRVIEARNIPAMDQN-GYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVL-DEDKYF 74 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~-g~~dPyv~v~~~~-----~k~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~v~V~-D~d~~~ 74 (1016)
+|.|.|++|++|..+... ..++|||+|++.. .+.+|+...+++.|-+.+...|.-.++...|.++|| |..++.
T Consensus 270 ~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdygRmd 349 (405)
T KOG2060|consen 270 DLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYGRMD 349 (405)
T ss_pred ceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEeccccccc
Confidence 578999999999776542 2699999999853 368899999999998888899988888999999999 567788
Q ss_pred CCceeEEEEeecccccccCCCCCccEEEEccCCC
Q 001764 75 NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (1016)
Q Consensus 75 ~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~ 108 (1016)
.+.|+|.+.+-+.+|-.. ......||+|.+..
T Consensus 350 ~k~fmg~aqi~l~eL~ls--~~~~igwyKlfgss 381 (405)
T KOG2060|consen 350 HKSFMGVAQIMLDELNLS--SSPVIGWYKLFGSS 381 (405)
T ss_pred hHHHhhHHHHHhhhhccc--cccceeeeeccCCc
Confidence 889999999999988532 22467899999754
No 242
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.07 E-value=0.00059 Score=63.82 Aligned_cols=101 Identities=17% Similarity=0.228 Sum_probs=72.6
Q ss_pred EEEEEEEeecCCCCCC-------------CCCCCcEEEEEEC----CeeeeeecCCCCCCCeeeEEEEEEee-----CC-
Q 001764 539 LTVALIKGDNLAAVDS-------------SGFCDPYVVFTCN----GKSRTSSIKFQQCDPMWNEIFEYDAM-----DE- 595 (1016)
Q Consensus 539 L~V~v~~A~~L~~~d~-------------~g~sDPyv~v~~~----~~~~~T~~~~~t~nP~WnE~f~f~~~-----~~- 595 (1016)
|.|.|++|.+|...-. .=..++||++.+. ++.++|+++-++-.|.|+..++|.+. ++
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 4577888888754311 1125799999953 44599999999999999999999764 11
Q ss_pred ---------CCCeEEEEEEEccCC---------CCCCceeeEEEEEceecC-CCCceeEEEEC
Q 001764 596 ---------PPSMLDVEVYDFDGP---------FNEATSLGHAEINFVKSD-ISDLADVWIPL 639 (1016)
Q Consensus 596 ---------~~~~L~i~V~D~d~~---------~~~dd~lG~~~i~l~~~~-~~~~~~~w~~L 639 (1016)
....+.++||..+.. -.+|-.||.+.||+.++. ...+...|||+
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 134688999987641 124558999999999954 45566889985
No 243
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.02 E-value=0.0017 Score=60.88 Aligned_cols=100 Identities=21% Similarity=0.410 Sum_probs=74.5
Q ss_pred EEEEEEEeecCCCCCC-------------CCCCCcEEEEEE----CCeEEEeeeccCCCCCeeccEEEEEEe--------
Q 001764 3 LVVRVIEARNIPAMDQ-------------NGYSDPYVRLQL----GRQRFKTKVVRKSLSPSWEEEFSFKVE-------- 57 (1016)
Q Consensus 3 L~V~V~~Ar~L~~~d~-------------~g~~dPyv~v~~----~~~k~kTkvi~~t~nP~WnE~f~f~v~-------- 57 (1016)
|.|.|.+|.||..... .-.-++||.+.+ +++..+|+++.++..|.|+..++|.++
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 4577888888753321 012589999995 356799999999999999999999873
Q ss_pred C--------CCCEEEEEEEecCCC----------CCCceeEEEEeecccccccCCCCCccEEEEc
Q 001764 58 D--------LKDELVISVLDEDKY----------FNDDFVGFLKIPVSRVFDADNKSLPTAWHSL 104 (1016)
Q Consensus 58 ~--------~~~~L~v~V~D~d~~----------~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L 104 (1016)
. ....+.++||+...- .+|-.||.+.||+.+|+.... ....||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rs--GitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRS--GITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhccc--CccccccC
Confidence 1 136899999997752 245589999999999986433 35779875
No 244
>PLN02964 phosphatidylserine decarboxylase
Probab=96.91 E-value=0.0011 Score=79.76 Aligned_cols=84 Identities=19% Similarity=0.426 Sum_probs=68.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcE-EEEEECCeEEEeeeccCCCCCeeccEEEEEEeCC-CCEEEEEEEecCCCCCCceeE
Q 001764 3 LVVRVIEARNIPAMDQNGYSDPY-VRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDL-KDELVISVLDEDKYFNDDFVG 80 (1016)
Q Consensus 3 L~V~V~~Ar~L~~~d~~g~~dPy-v~v~~~~~k~kTkvi~~t~nP~WnE~f~f~v~~~-~~~L~v~V~D~d~~~~d~~lG 80 (1016)
+.+++++|+ ++ ..||| +.+++|.+.+||.+.++|+||+||+...|.+.+. ....++.|||.+.+++++.+|
T Consensus 56 ~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~lv~ 128 (644)
T PLN02964 56 ALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNTLVG 128 (644)
T ss_pred EEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHHhhh
Confidence 467777776 22 25775 5567788999999999999999999999999443 345699999999999999999
Q ss_pred EEEeecccccccC
Q 001764 81 FLKIPVSRVFDAD 93 (1016)
Q Consensus 81 ~~~v~l~~l~~~~ 93 (1016)
.+.++|.++...+
T Consensus 129 ~~e~~~t~f~~kq 141 (644)
T PLN02964 129 YCELDLFDFVTQE 141 (644)
T ss_pred heeecHhhccHHH
Confidence 9999998886543
No 245
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=96.90 E-value=0.0014 Score=75.93 Aligned_cols=87 Identities=17% Similarity=0.299 Sum_probs=70.1
Q ss_pred EEEEEeecCCCCCCCCCCCcEEEEEE--CCee----eeeecCCCCCCCeeeEEEEEE----eeCCCCCeEEEEEEEccCC
Q 001764 541 VALIKGDNLAAVDSSGFCDPYVVFTC--NGKS----RTSSIKFQQCDPMWNEIFEYD----AMDEPPSMLDVEVYDFDGP 610 (1016)
Q Consensus 541 V~v~~A~~L~~~d~~g~sDPyv~v~~--~~~~----~~T~~~~~t~nP~WnE~f~f~----~~~~~~~~L~i~V~D~d~~ 610 (1016)
.-.++|++|..+|..+++|||..+.- +... ++|.++++++||.|-+.. +. +..++...+.+.+||+|.
T Consensus 140 ~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~~-i~~~~l~~~~~~~~~~i~~~d~~~- 217 (529)
T KOG1327|consen 140 QFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPFS-ISLQSLCSKDGNRPIQIECYDYDS- 217 (529)
T ss_pred eeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccccc-cchhhhcccCCCCceEEEEeccCC-
Confidence 34556899999999999999999873 2222 899999999999998632 21 123456789999999998
Q ss_pred CCCCceeeEEEEEceecCC
Q 001764 611 FNEATSLGHAEINFVKSDI 629 (1016)
Q Consensus 611 ~~~dd~lG~~~i~l~~~~~ 629 (1016)
.+++++||++..++.++..
T Consensus 218 ~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 218 NGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred CCCcCceeEecccHHHhcc
Confidence 7888999999999999865
No 246
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.0013 Score=72.04 Aligned_cols=105 Identities=19% Similarity=0.328 Sum_probs=84.2
Q ss_pred eEEEEEEEEeecCCCCCC-CCCCCcEEEEEECCee-----eeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEE-ccC
Q 001764 537 WLLTVALIKGDNLAAVDS-SGFCDPYVVFTCNGKS-----RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYD-FDG 609 (1016)
Q Consensus 537 ~~L~V~v~~A~~L~~~d~-~g~sDPyv~v~~~~~~-----~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D-~d~ 609 (1016)
+.+.|.|++|++|..+.. ...++|||+|++-... .+|+...+|++|.+-+...|+- .++...|.+.||- ..+
T Consensus 269 g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~-sp~~k~Lq~tv~gdygR 347 (405)
T KOG2060|consen 269 GDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQ-SPPGKYLQGTVWGDYGR 347 (405)
T ss_pred CceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhcc-CCCccEEEEEEeccccc
Confidence 459999999999987644 3368999999964322 7899999999998888888854 3446789999995 445
Q ss_pred CCCCCceeeEEEEEceecCCCC-ceeEEEECCcCC
Q 001764 610 PFNEATSLGHAEINFVKSDISD-LADVWIPLQGKL 643 (1016)
Q Consensus 610 ~~~~dd~lG~~~i~l~~~~~~~-~~~~w~~L~~~~ 643 (1016)
..++.|+|.+.+.+.++.... ....||+|.+..
T Consensus 348 -md~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss 381 (405)
T KOG2060|consen 348 -MDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS 381 (405)
T ss_pred -cchHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence 677889999999999988776 778999998753
No 247
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=96.57 E-value=0.008 Score=69.80 Aligned_cols=163 Identities=17% Similarity=0.113 Sum_probs=103.0
Q ss_pred eeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCC---CCCCceeeEEEEEceecCCCCceeEEEECCcCCcCcc
Q 001764 571 RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGP---FNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQAC 647 (1016)
Q Consensus 571 ~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~---~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~~~~~~~~ 647 (1016)
.+|.++.+.+||.|-+.|.+++..+..+.|+++++|-|.. +..+||+|+++..+..+........-+-|.. +....
T Consensus 43 ~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~-~~~~~ 121 (529)
T KOG1327|consen 43 GRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKP-GKNAG 121 (529)
T ss_pred cceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhccc-CccCC
Confidence 5899999999999999999988888899999999998751 3567899999999999765443222222221 13445
Q ss_pred cceEEEEEEEeecCCCccc---hhh-hhhcccccCc--eeEeecCCc-cccceeccCCCcccccccceeceeee-ecccc
Q 001764 648 QSKLHLRIFLNNTKGSNVV---KEY-LTKMEKEVGK--KINLRSPQT-NSAFQKLFGLPPEEFLINDFTCHLKR-KMLLQ 719 (1016)
Q Consensus 648 ~g~l~l~~~~~~~~~~~~~---~~~-l~k~e~~~~~--~~~~~s~~~-~~~f~~~F~l~~~E~l~~~~~c~~~~-~~~~~ 719 (1016)
.|.|.+++.-......... ..+ |++.+ .+++ +|....++- .+..+. +..+|.+.+..+..|.. .++.+
T Consensus 122 ~g~iti~aee~~~~~~~~~~~~~~~~ld~kd-~f~ksd~~l~~~~~~~d~s~~~---~~~tEv~~n~l~p~w~~~~i~~~ 197 (529)
T KOG1327|consen 122 SGTITISAEEDESDNDVVQFSFRAKNLDPKD-FFSKSDPYLEFYKRVDDGSTQM---LYRTEVVKNTLNPQWAPFSISLQ 197 (529)
T ss_pred cccEEEEeecccccCceeeeeeeeeecCccc-ccccCCcceEEEEecCCCceee---ccccceeccCCCCcccccccchh
Confidence 6777777764333222111 111 44333 2222 333222221 122232 45589999999998877 44443
Q ss_pred ----ceeeeeccEEEEeeccCCc
Q 001764 720 ----GRLFLSARIIGFHANLFGH 738 (1016)
Q Consensus 720 ----Grlyis~~~~cF~s~~~g~ 738 (1016)
+.+-.+...+|++.+..|.
T Consensus 198 ~l~~~~~~~~~~i~~~d~~~~~~ 220 (529)
T KOG1327|consen 198 SLCSKDGNRPIQIECYDYDSNGK 220 (529)
T ss_pred hhcccCCCCceEEEEeccCCCCC
Confidence 3444666688988877664
No 248
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.41 E-value=0.0032 Score=69.38 Aligned_cols=119 Identities=19% Similarity=0.343 Sum_probs=89.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeeeccCCCCCeeccEEEEEEeC---C---------CCEEEE
Q 001764 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVED---L---------KDELVI 65 (1016)
Q Consensus 3 L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~-----~~k~kTkvi~~t~nP~WnE~f~f~v~~---~---------~~~L~v 65 (1016)
|.+.|+++++++........|-|+.+.+- .++.+|.+++++.+|.|+|.|.+.+.. . ...+.|
T Consensus 369 lel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kf 448 (523)
T KOG3837|consen 369 LELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKF 448 (523)
T ss_pred hHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeE
Confidence 44567777777655433346778888772 457899999999999999999999843 1 347889
Q ss_pred EEEecCCC-CCCceeEEEEeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEEEEEec
Q 001764 66 SVLDEDKY-FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (1016)
Q Consensus 66 ~V~D~d~~-~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~~ 128 (1016)
+||+...| .+|.++|.+.+.|.-|. +.+.....|+|.+..+ .+.|.|.+.+.....
T Consensus 449 eifhkggf~rSdkl~gt~nikle~Le---n~cei~e~~~l~DGRK----~vGGkLevKvRiR~P 505 (523)
T KOG3837|consen 449 EIFHKGGFNRSDKLTGTGNIKLEILE---NMCEICEYLPLKDGRK----AVGGKLEVKVRIRQP 505 (523)
T ss_pred EEeeccccccccceeceeeeeehhhh---cccchhhceecccccc----ccCCeeEEEEEEecc
Confidence 99998854 56889999999988773 3444556788887553 678999999998654
No 249
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.23 E-value=0.0045 Score=68.26 Aligned_cols=124 Identities=15% Similarity=0.212 Sum_probs=93.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeecCCCCCCCeeeEEEEEEeeCCC-----------CCeEE
Q 001764 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCN-----GKSRTSSIKFQQCDPMWNEIFEYDAMDEP-----------PSMLD 601 (1016)
Q Consensus 538 ~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~-----~~~~~T~~~~~t~nP~WnE~f~f~~~~~~-----------~~~L~ 601 (1016)
.|.+.|+++.+++.-...-..|-||.+.+. .++.+|.++++|..|.++|.|.+++...+ ..-++
T Consensus 368 elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~k 447 (523)
T KOG3837|consen 368 ELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKK 447 (523)
T ss_pred HhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCee
Confidence 478889999988765433345678888863 33489999999999999999999875421 12389
Q ss_pred EEEEEccCCCCCCceeeEEEEEceecCCCCceeEEEECCcCCcCcccceEEEEEEEeecCC
Q 001764 602 VEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQACQSKLHLRIFLNNTKG 662 (1016)
Q Consensus 602 i~V~D~d~~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~~~~~~~~~g~l~l~~~~~~~~~ 662 (1016)
|++|....-+.+|.++|.+.+.+..+...-.....++|..- .+..+|+|.+++.+.+.-+
T Consensus 448 feifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DG-RK~vGGkLevKvRiR~Pi~ 507 (523)
T KOG3837|consen 448 FEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDG-RKAVGGKLEVKVRIRQPIG 507 (523)
T ss_pred EEEeeccccccccceeceeeeeehhhhcccchhhceecccc-ccccCCeeEEEEEEecccc
Confidence 99999876356788999999999888766556777888531 2346899999999876544
No 250
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=95.93 E-value=0.0065 Score=52.94 Aligned_cols=94 Identities=18% Similarity=0.265 Sum_probs=66.4
Q ss_pred EEEEEEeecCCCCCCCCCCCc--EEE--EEECCe-eeeeecCCCCCCCeeeEEEEEEee--CCCCCeEEEEEEEccCCCC
Q 001764 540 TVALIKGDNLAAVDSSGFCDP--YVV--FTCNGK-SRTSSIKFQQCDPMWNEIFEYDAM--DEPPSMLDVEVYDFDGPFN 612 (1016)
Q Consensus 540 ~V~v~~A~~L~~~d~~g~sDP--yv~--v~~~~~-~~~T~~~~~t~nP~WnE~f~f~~~--~~~~~~L~i~V~D~d~~~~ 612 (1016)
-++|+.++||.--...| -+| |++ +++... ..+|+++.+..||++.|+|.|.+. .-..-.|.+.|+.. ..
T Consensus 2 witv~~c~d~s~~~~~~-e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~---~~ 77 (103)
T cd08684 2 WITVLKCKDLSWPSSCG-ENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQ---TP 77 (103)
T ss_pred EEEEEEecccccccccC-cCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeecc---CC
Confidence 37889999996544333 234 554 344433 389999999999999999999773 23455788999983 35
Q ss_pred CCceeeEEEEEceecCCCCceeEEEE
Q 001764 613 EATSLGHAEINFVKSDISDLADVWIP 638 (1016)
Q Consensus 613 ~dd~lG~~~i~l~~~~~~~~~~~w~~ 638 (1016)
+...||.+.+.++++..++ .+.|..
T Consensus 78 RKe~iG~~sL~l~s~geeE-~~HW~e 102 (103)
T cd08684 78 RKRTIGECSLSLRTLSTQE-TDHWLE 102 (103)
T ss_pred ccceeeEEEeecccCCHHH-hhhhhc
Confidence 7789999999998865432 345543
No 251
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=95.86 E-value=0.097 Score=58.74 Aligned_cols=121 Identities=13% Similarity=0.232 Sum_probs=93.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeecCCCCCCCeeeEEEEEEeeC-------CCCCeEEEEEEEccCCC
Q 001764 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMD-------EPPSMLDVEVYDFDGPF 611 (1016)
Q Consensus 539 L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~~~~-------~~~~~L~i~V~D~d~~~ 611 (1016)
+.|+|++|+|.+... .-.-.+..+++|....|..+..+..|.||..+.+++.. .....|++++|-.|..-
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 679999999998873 33457778899999999999999999999999887632 23567999999998324
Q ss_pred CCCceeeEEEEEceec---CCC--CceeEEEECCcC--CcCcccceEEEEEEEeecCC
Q 001764 612 NEATSLGHAEINFVKS---DIS--DLADVWIPLQGK--LAQACQSKLHLRIFLNNTKG 662 (1016)
Q Consensus 612 ~~dd~lG~~~i~l~~~---~~~--~~~~~w~~L~~~--~~~~~~g~l~l~~~~~~~~~ 662 (1016)
+..+.||.+.++|..+ ..+ .....||+|.+. .-....-+|.|.+.+.....
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~ 136 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK 136 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEecccc
Confidence 6778999999999997 444 456889999865 22334567777777765443
No 252
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.75 E-value=0.084 Score=52.11 Aligned_cols=121 Identities=18% Similarity=0.181 Sum_probs=87.2
Q ss_pred EEEEEEEEeecCCCCCC--CCCCCc--EEEEEECCeeeeeecCCCCCCCeeeEEEEEEeeCC-------------CCCeE
Q 001764 538 LLTVALIKGDNLAAVDS--SGFCDP--YVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDE-------------PPSML 600 (1016)
Q Consensus 538 ~L~V~v~~A~~L~~~d~--~g~sDP--yv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~~~~~-------------~~~~L 600 (1016)
.|.|+|+.++-...--. .|..+. .+-+.+++++++|+.+.-+.+|.++|.|-|++..+ ..+.|
T Consensus 10 yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pi 89 (156)
T PF15627_consen 10 YLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPI 89 (156)
T ss_pred EEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCce
Confidence 48999999884322111 144444 44455789999999999999999999999988543 24568
Q ss_pred EEEEEEccCCCCCCceeeEEEEEceecCCCCce--eEEEECCcCCc--CcccceEEEEEEEee
Q 001764 601 DVEVYDFDGPFNEATSLGHAEINFVKSDISDLA--DVWIPLQGKLA--QACQSKLHLRIFLNN 659 (1016)
Q Consensus 601 ~i~V~D~d~~~~~dd~lG~~~i~l~~~~~~~~~--~~w~~L~~~~~--~~~~g~l~l~~~~~~ 659 (1016)
++.|.-.|. .+...++|.-.+++..+...+.. ..-+.|.+..+ +...|.|.|++++-.
T Consensus 90 hivli~~d~-~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP 151 (156)
T PF15627_consen 90 HIVLIRTDP-SGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLP 151 (156)
T ss_pred EEEEEEecC-CCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeec
Confidence 898988887 66668999999999997665555 33444445432 246899999998754
No 253
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=95.60 E-value=0.31 Score=54.80 Aligned_cols=122 Identities=18% Similarity=0.369 Sum_probs=93.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeC--------CCCEEEEEEEecC-CC
Q 001764 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVED--------LKDELVISVLDED-KY 73 (1016)
Q Consensus 3 L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~~k~kTkvi~~t~nP~WnE~f~f~v~~--------~~~~L~v~V~D~d-~~ 73 (1016)
+.|+|++|+|.+... .-.-++...++++...|-.+..+-.|.||.++.|+++. ....|++++|.-+ .-
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 678999999998763 34567778889999999999899999999999999832 2468889999887 44
Q ss_pred CCCceeEEEEeecccc---cccCCCCCccEEEEccCCCCCCCCCcceEEEEEEEEEecC
Q 001764 74 FNDDFVGFLKIPVSRV---FDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHNT 129 (1016)
Q Consensus 74 ~~d~~lG~~~v~l~~l---~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~~~ 129 (1016)
+..+-+|.+.++|... ... +......||+|..-+.+- .+..-+|+|.+......
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~-~~~~~~~W~~LL~~~~~y-~~~KPEl~l~l~ie~~~ 135 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEK-NQKQKPKWYKLLSSSSKY-KKHKPELLLSLSIEDDS 135 (340)
T ss_pred CcceeccEEEEEcccccccccc-ccccCCCeeEcccccccc-ccCCccEEEEEEEeccc
Confidence 6678999999999998 322 224678999999763221 13457888888887553
No 254
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=95.56 E-value=0.016 Score=50.65 Aligned_cols=85 Identities=16% Similarity=0.271 Sum_probs=62.3
Q ss_pred EEEEEEeecCCCCCCCCCCCc--EEEE--EEC-CeEEEeeeccCCCCCeeccEEEEEEe---CCCCEEEEEEEecCCCCC
Q 001764 4 VVRVIEARNIPAMDQNGYSDP--YVRL--QLG-RQRFKTKVVRKSLSPSWEEEFSFKVE---DLKDELVISVLDEDKYFN 75 (1016)
Q Consensus 4 ~V~V~~Ar~L~~~d~~g~~dP--yv~v--~~~-~~k~kTkvi~~t~nP~WnE~f~f~v~---~~~~~L~v~V~D~d~~~~ 75 (1016)
-++|+.+++|.-...-| -+| |++= ++. ....||.+.....||+|.|+|.|.+. -.+-.|.+.|+.. ..+
T Consensus 2 witv~~c~d~s~~~~~~-e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~--~~R 78 (103)
T cd08684 2 WITVLKCKDLSWPSSCG-ENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQ--TPR 78 (103)
T ss_pred EEEEEEecccccccccC-cCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeecc--CCc
Confidence 37899999996544322 334 4432 233 34688988889999999999999983 2356899999993 356
Q ss_pred CceeEEEEeecccccc
Q 001764 76 DDFVGFLKIPVSRVFD 91 (1016)
Q Consensus 76 d~~lG~~~v~l~~l~~ 91 (1016)
.+.||.+.+.++++-.
T Consensus 79 Ke~iG~~sL~l~s~ge 94 (103)
T cd08684 79 KRTIGECSLSLRTLST 94 (103)
T ss_pred cceeeEEEeecccCCH
Confidence 7899999999988743
No 255
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.53 E-value=0.16 Score=50.10 Aligned_cols=125 Identities=24% Similarity=0.267 Sum_probs=86.0
Q ss_pred EEEEEEEeecCCCCCCC--CC--CCcEEEEEECCeEEEeeeccCCCCCeeccEEEEEEeCC--------------CCEEE
Q 001764 3 LVVRVIEARNIPAMDQN--GY--SDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDL--------------KDELV 64 (1016)
Q Consensus 3 L~V~V~~Ar~L~~~d~~--g~--~dPyv~v~~~~~k~kTkvi~~t~nP~WnE~f~f~v~~~--------------~~~L~ 64 (1016)
|+++|..++-...--.. +. +--.+-+.+++++++|+.+..+.+|.++|.|.|++... ...|+
T Consensus 11 L~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pih 90 (156)
T PF15627_consen 11 LHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIH 90 (156)
T ss_pred EEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceE
Confidence 67777777643211110 22 23345556689999999999999999999999999321 35788
Q ss_pred EEEEecCCCCCCceeEEEEeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEEEEEecC
Q 001764 65 ISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHNT 129 (1016)
Q Consensus 65 v~V~D~d~~~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~~~ 129 (1016)
+.|.--|..+...++|.-.+....++..+.+.. ..-..|....... ....|-|.+++.+.|..
T Consensus 91 ivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~-~~~vEL~G~~~e~-kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 91 IVLIRTDPSGETTLVGSHFLDWRKVLCSGNGST-SFTVELCGVGPES-KVPVGILDLRLELLPNL 153 (156)
T ss_pred EEEEEecCCCceEeeeeceehHHHHhccCCCcc-ceeEEEeccCCCC-ccceeEEEEEEEeecCC
Confidence 888888876667899999999999886554321 2233444433322 24689999999998653
No 256
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.49 E-value=0.029 Score=67.43 Aligned_cols=109 Identities=25% Similarity=0.400 Sum_probs=80.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------CeEEEeeeccC-CCCCeeccE-EEEEE--eCCCCEEEEEEEec
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG-------RQRFKTKVVRK-SLSPSWEEE-FSFKV--EDLKDELVISVLDE 70 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~-------~~k~kTkvi~~-t~nP~WnE~-f~f~v--~~~~~~L~v~V~D~ 70 (1016)
+|.|+|+++.-|..++ ...||.|.+- ...++|+++.+ +.||+|+|+ |.|.- -+.-..|+|.||++
T Consensus 704 t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeE 779 (1189)
T KOG1265|consen 704 TLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEE 779 (1189)
T ss_pred eEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeecc
Confidence 5889999999997665 4489999983 24588988885 699999976 77753 34457899999997
Q ss_pred CCCCCCceeEEEEeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEEEEE
Q 001764 71 DKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (1016)
Q Consensus 71 d~~~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~ 126 (1016)
. ..|||+-.+|+..+.. +.+.+.|......+ -....|.+.+.+.
T Consensus 780 g----gK~ig~RIlpvd~l~~------GYrhv~LRse~Nqp--l~lp~Lfv~i~~k 823 (1189)
T KOG1265|consen 780 G----GKFIGQRILPVDGLNA------GYRHVCLRSESNQP--LTLPALFVYIVLK 823 (1189)
T ss_pred C----CceeeeeccchhcccC------cceeEEecCCCCCc--cccceeEEEEEee
Confidence 6 3699999999988843 56788888765432 2235555555543
No 257
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.01 E-value=0.17 Score=50.62 Aligned_cols=84 Identities=20% Similarity=0.321 Sum_probs=60.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE--CCee----eeeecCCCCCCCeeeEEEEEEee-C--CCCCeEEEEEEEccC
Q 001764 539 LTVALIKGDNLAAVDSSGFCDPYVVFTC--NGKS----RTSSIKFQQCDPMWNEIFEYDAM-D--EPPSMLDVEVYDFDG 609 (1016)
Q Consensus 539 L~V~v~~A~~L~~~d~~g~sDPyv~v~~--~~~~----~~T~~~~~t~nP~WnE~f~f~~~-~--~~~~~L~i~V~D~d~ 609 (1016)
++|+|++|.+++..+ .+|-||.+.+ |++. ..|+.+.. .++.|||.++|++. . +...+|.|+||+...
T Consensus 10 ~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~ 85 (158)
T cd08398 10 LRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKG 85 (158)
T ss_pred eEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEec
Confidence 899999999998653 4688888763 5554 34544443 68999999999872 1 346689999999753
Q ss_pred CCC----CCceeeEEEEEceec
Q 001764 610 PFN----EATSLGHAEINFVKS 627 (1016)
Q Consensus 610 ~~~----~dd~lG~~~i~l~~~ 627 (1016)
-. ..-.||.+.++|-+.
T Consensus 86 -~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 86 -RKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred -ccCCCCceEEEEEEEEEEECC
Confidence 11 224689998888773
No 258
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=94.88 E-value=0.18 Score=51.41 Aligned_cols=85 Identities=21% Similarity=0.257 Sum_probs=59.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEE--ECCee----eeeecCCCCCCCeeeEEEEEEeeC---CCCCeEEEEEEEccC
Q 001764 539 LTVALIKGDNLAAVDSSGFCDPYVVFT--CNGKS----RTSSIKFQQCDPMWNEIFEYDAMD---EPPSMLDVEVYDFDG 609 (1016)
Q Consensus 539 L~V~v~~A~~L~~~d~~g~sDPyv~v~--~~~~~----~~T~~~~~t~nP~WnE~f~f~~~~---~~~~~L~i~V~D~d~ 609 (1016)
++|+|+.+.+|... ...++-||.+. .|++. ..|+.+.-..++.|||.++|++.- +...+|.|.||+...
T Consensus 10 f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~~ 87 (173)
T cd08693 10 FSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVSK 87 (173)
T ss_pred EEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEecc
Confidence 89999999999862 23456677754 45655 466666656789999999998721 345689999999653
Q ss_pred CCC----------------CCceeeEEEEEcee
Q 001764 610 PFN----------------EATSLGHAEINFVK 626 (1016)
Q Consensus 610 ~~~----------------~dd~lG~~~i~l~~ 626 (1016)
.. .+..||.+.++|-+
T Consensus 88 -~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 88 -KAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred -cccccccccccccccccCcceEEEEEeEEEEc
Confidence 11 13577777777666
No 259
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=93.95 E-value=0.34 Score=48.58 Aligned_cols=87 Identities=17% Similarity=0.261 Sum_probs=61.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEE--ECCee----eeeecCCCCCCCeeeEEEEEEee---CCCCCeEEEEEEEccC
Q 001764 539 LTVALIKGDNLAAVDSSGFCDPYVVFT--CNGKS----RTSSIKFQQCDPMWNEIFEYDAM---DEPPSMLDVEVYDFDG 609 (1016)
Q Consensus 539 L~V~v~~A~~L~~~d~~g~sDPyv~v~--~~~~~----~~T~~~~~t~nP~WnE~f~f~~~---~~~~~~L~i~V~D~d~ 609 (1016)
++|++..+.++...+ ....+-||.+. .|++. ..|.......++.|||.++|++. -+...+|.|.||+.+.
T Consensus 10 ~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~ 88 (156)
T cd08380 10 LRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSE 88 (156)
T ss_pred eEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEec
Confidence 788999988887622 22456677765 35553 34555444478999999999862 1345689999999875
Q ss_pred CCC--CCceeeEEEEEceec
Q 001764 610 PFN--EATSLGHAEINFVKS 627 (1016)
Q Consensus 610 ~~~--~dd~lG~~~i~l~~~ 627 (1016)
.. .+..||.+.++|=+.
T Consensus 89 -~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 89 -PGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred -CCCCcceEEEEEeEEeEcc
Confidence 33 457999999998774
No 260
>PF14470 bPH_3: Bacterial PH domain
Probab=93.79 E-value=0.5 Score=42.80 Aligned_cols=88 Identities=17% Similarity=0.127 Sum_probs=62.3
Q ss_pred CCcccccccceeceeeee-ccccceeeeeccEEEEeecc-CCceEEEEEecccceEEEEcCCcccCCCCCeEEEEEeecC
Q 001764 698 LPPEEFLINDFTCHLKRK-MLLQGRLFLSARIIGFHANL-FGHKTNFFFLWEDIEDIQVLPPSLSSMGSPVIVMTLRQGR 775 (1016)
Q Consensus 698 l~~~E~l~~~~~c~~~~~-~~~~Grlyis~~~~cF~s~~-~g~~t~~~i~~~dI~~i~k~~~~~~~~~~~~~~i~l~~~~ 775 (1016)
|.++|.+.....|.+... -...|-+++|...+-|+..- +|......|||++|.+|+.....+
T Consensus 1 L~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~~---------------- 64 (96)
T PF14470_consen 1 LKEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGIL---------------- 64 (96)
T ss_pred CcCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEcccc----------------
Confidence 456888888888877632 22359999999999999765 667888999999999999887422
Q ss_pred CCCCCCCceeeccCCceEEEeccCcCHHHHHHH
Q 001764 776 GMDARHGAKTQDEEGRLKFHFHSFVSYNVAHRT 808 (1016)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~f~sf~~rd~~~~~ 808 (1016)
.+.+.+.. +..++.|.++ ..+++-..
T Consensus 65 -----~~~i~i~~-~~~~~~i~~i-~k~~~~~~ 90 (96)
T PF14470_consen 65 -----GGKITIET-NGEKIKIDNI-QKGDVKEF 90 (96)
T ss_pred -----ccEEEEEE-CCEEEEEEEc-CHHHHHHH
Confidence 13344444 3358888887 55554433
No 261
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=93.70 E-value=0.29 Score=49.85 Aligned_cols=69 Identities=22% Similarity=0.347 Sum_probs=49.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE----EEeeeccCCCCCeeccEEEEEEe----CCCCEEEEEEEecC
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL--GRQR----FKTKVVRKSLSPSWEEEFSFKVE----DLKDELVISVLDED 71 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~--~~~k----~kTkvi~~t~nP~WnE~f~f~v~----~~~~~L~v~V~D~d 71 (1016)
+++|+|+.+.+|... ....+-|+.+.+ |++. ..|+.+.-+.++.|||.+.|++. +....|.|+||+..
T Consensus 9 ~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 9 KFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 478999999999862 234666777654 5442 45655554567999999999872 34679999999965
Q ss_pred C
Q 001764 72 K 72 (1016)
Q Consensus 72 ~ 72 (1016)
.
T Consensus 87 ~ 87 (173)
T cd08693 87 K 87 (173)
T ss_pred c
Confidence 3
No 262
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=93.64 E-value=0.86 Score=45.64 Aligned_cols=84 Identities=18% Similarity=0.269 Sum_probs=59.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE----EEeeeccCCCCCeeccEEEEEEe----CCCCEEEEEEEecC
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL--GRQR----FKTKVVRKSLSPSWEEEFSFKVE----DLKDELVISVLDED 71 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~--~~~k----~kTkvi~~t~nP~WnE~f~f~v~----~~~~~L~v~V~D~d 71 (1016)
.++|+|++|.+++..+ .+|-|+.+++ |++. ..|+.+.. .++.|||-+.|++. +.+..|.|+||+..
T Consensus 9 ~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~ 84 (158)
T cd08398 9 NLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVK 84 (158)
T ss_pred CeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence 4789999999987643 4688888865 4432 34444443 67999999999882 34689999999965
Q ss_pred CCC----CCceeEEEEeecccc
Q 001764 72 KYF----NDDFVGFLKIPVSRV 89 (1016)
Q Consensus 72 ~~~----~d~~lG~~~v~l~~l 89 (1016)
.-. ....||.+.++|-+.
T Consensus 85 ~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 85 GRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred cccCCCCceEEEEEEEEEEECC
Confidence 311 124689998887664
No 263
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=93.22 E-value=0.4 Score=58.14 Aligned_cols=111 Identities=19% Similarity=0.239 Sum_probs=78.1
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------eeeeecC-CCCCCCeee-EEEEEEe-eCCCCCeEEEEEE
Q 001764 536 GWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGK-------SRTSSIK-FQQCDPMWN-EIFEYDA-MDEPPSMLDVEVY 605 (1016)
Q Consensus 536 ~~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~-------~~~T~~~-~~t~nP~Wn-E~f~f~~-~~~~~~~L~i~V~ 605 (1016)
.+.+.|+|++|.=|..++ ..-||.|.+-|- .++|++. .++.||+|+ |-|.|.- .-+.-..|+|.||
T Consensus 702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 367999999999998775 338999996442 2555554 588999999 5577753 3333567999999
Q ss_pred EccCCCCCCceeeEEEEEceecCCCCceeEEEECCcCCcCc-ccceEEEEEEEe
Q 001764 606 DFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQA-CQSKLHLRIFLN 658 (1016)
Q Consensus 606 D~d~~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~~~~~~~-~~g~l~l~~~~~ 658 (1016)
+... .+||+-.+|+..+..+. ..+.|....++. .-..|.+.+.+.
T Consensus 778 eEgg-----K~ig~RIlpvd~l~~GY---rhv~LRse~Nqpl~lp~Lfv~i~~k 823 (1189)
T KOG1265|consen 778 EEGG-----KFIGQRILPVDGLNAGY---RHVCLRSESNQPLTLPALFVYIVLK 823 (1189)
T ss_pred ccCC-----ceeeeeccchhcccCcc---eeEEecCCCCCccccceeEEEEEee
Confidence 9765 59999999999988764 556776543322 234566666543
No 264
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=93.04 E-value=2.7 Score=41.23 Aligned_cols=119 Identities=21% Similarity=0.343 Sum_probs=77.9
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee---eeee-cCCCCCCCeeeEEEEEEeeC---C-----CCCeEEEEE
Q 001764 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKS---RTSS-IKFQQCDPMWNEIFEYDAMD---E-----PPSMLDVEV 604 (1016)
Q Consensus 537 ~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~~---~~T~-~~~~t~nP~WnE~f~f~~~~---~-----~~~~L~i~V 604 (1016)
..+.|+|.+..++|.. ..--||....++.. .+|. ....+-.-.|||.|.+.+.- . ..-.+.|.|
T Consensus 7 f~~~l~i~~l~~~p~~----~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v 82 (143)
T PF10358_consen 7 FQFDLTIHELENLPSS----NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV 82 (143)
T ss_pred EEEEEEEEEeECcCCC----CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence 4588999999999872 23345556566553 2333 33345567899999887631 1 122488888
Q ss_pred EEccCCCCCCceeeEEEEEceecCCC--CceeEEEECCcCCcCcccceEEEEEEEeecCC
Q 001764 605 YDFDGPFNEATSLGHAEINFVKSDIS--DLADVWIPLQGKLAQACQSKLHLRIFLNNTKG 662 (1016)
Q Consensus 605 ~D~d~~~~~dd~lG~~~i~l~~~~~~--~~~~~w~~L~~~~~~~~~g~l~l~~~~~~~~~ 662 (1016)
+..+. -++...+|.+.|+|++.... .....-++|... ......|+|.+.+..-++
T Consensus 83 ~~~~~-~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~--~~~~a~L~isi~~~~~~~ 139 (143)
T PF10358_consen 83 FEVDG-SGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC--KKSNATLSISISLSELRE 139 (143)
T ss_pred EEecC-CCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC--CCCCcEEEEEEEEEECcc
Confidence 88743 23335999999999997663 455667777654 334567888888765444
No 265
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=92.89 E-value=0.93 Score=45.53 Aligned_cols=71 Identities=21% Similarity=0.327 Sum_probs=51.2
Q ss_pred CCCCcEEEEEE--CCee----eeeecCCCCCCCeeeEEEEEEeeC---CCCCeEEEEEEEccCCCCCCceeeEEEEEcee
Q 001764 556 GFCDPYVVFTC--NGKS----RTSSIKFQQCDPMWNEIFEYDAMD---EPPSMLDVEVYDFDGPFNEATSLGHAEINFVK 626 (1016)
Q Consensus 556 g~sDPyv~v~~--~~~~----~~T~~~~~t~nP~WnE~f~f~~~~---~~~~~L~i~V~D~d~~~~~dd~lG~~~i~l~~ 626 (1016)
..+|-||.+.+ +++. ..|+.+.-+..+.|||...|++.- +....|.|+|||.+. .++...||.+.++|=+
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~-~~~~~~vg~~~~~lFd 106 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSG-TGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecC-CCCceEEEEEEEeeEC
Confidence 34667777653 4443 456666666778999999998732 346689999999876 4456789999998876
Q ss_pred c
Q 001764 627 S 627 (1016)
Q Consensus 627 ~ 627 (1016)
.
T Consensus 107 ~ 107 (159)
T cd08397 107 K 107 (159)
T ss_pred C
Confidence 4
No 266
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=92.61 E-value=4.9 Score=40.38 Aligned_cols=147 Identities=14% Similarity=0.128 Sum_probs=96.7
Q ss_pred cccccCChhheeeecCCChhHHHHHHHcCcceeeecccccCCCCceEEEEEEEEee-cc----CC-CccccCceE-EEEe
Q 001764 856 SSVLPVPMSFFMELFGGGELERAVMEKAGCVSYSCSSWESEKLDVYERQIYYRFDK-CI----SR-YRGEVTSTQ-QKSP 928 (1016)
Q Consensus 856 ~~~~p~~~~~~f~lF~~~~~~~~~~~~~g~~~~~~~~W~~~~~~~~~R~~sy~~~~-~~----~~-~~~~v~~~q-~~~~ 928 (1016)
...||++++.++.+|.+..|.+..++..|..+..+..-.....+ ....+.-.++. .+ .. .++.+.-+| ..+.
T Consensus 4 ~~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~~~~g-~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~e~w~ 82 (159)
T PF10698_consen 4 SVEYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFEVDGDG-VRVTVRQTVPADKLPSAARKFVGGDLRVTRTETWT 82 (159)
T ss_pred EEEcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEEcCCe-EEEEEEEecChhhCCHHHHHhcCCCeEEEEEEEEe
Confidence 34689999999999999999988888888756666665433333 33333333332 11 01 122222222 2232
Q ss_pred ccCCCcEEEEEEEEeCCCCCCCceEEEEEEEEEeCCCCCCccEEEEEEEEEEeeccchhhhhhhhhHHhHHHHHHHHHHH
Q 001764 929 LPNGNGWLVEEVMTLHGVPLGDYFNLHLRYQVEDSPSRPKGCLAQVYLGVAWLKSTRHQKRITKNIVSNLEDRLRVKLSV 1008 (1016)
Q Consensus 929 ~~~~~~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~~~c~l~V~~~V~w~Kst~~K~~Ie~~~~~~~~~~~~~~~~~ 1008 (1016)
-.++..+-..-....+++| ..+...+.++..+ .+|++.+...|.= |=+++-++||+.+.+.+.+.+..--++
T Consensus 83 ~~~~g~~~g~~~~~~~G~P----~~~~G~~~L~~~~---~gt~~~~~g~v~v-~VPlvGgkiE~~v~~~~~~~~~~e~~~ 154 (159)
T PF10698_consen 83 PLDDGRRTGTFTVSIPGAP----VSISGTMRLRPDG---GGTRLTVEGEVKV-KVPLVGGKIEKAVAENLRKLLEAEQEF 154 (159)
T ss_pred cCCCCeEEEEEEEEecCce----EEEEEEEEEecCC---CCEEEEEEEEEEE-EEccccHHHHHHHHHHHHHHHHHHHHH
Confidence 2245566666666666555 6788888888854 6899988888764 447799999999999999888776666
Q ss_pred HHh
Q 001764 1009 IEK 1011 (1016)
Q Consensus 1009 ~~~ 1011 (1016)
+.+
T Consensus 155 ~~~ 157 (159)
T PF10698_consen 155 TAE 157 (159)
T ss_pred HHh
Confidence 543
No 267
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=92.29 E-value=0.6 Score=47.54 Aligned_cols=89 Identities=18% Similarity=0.197 Sum_probs=63.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEE--ECCee----eeeecCC----CCCCCeeeEEEEEEeeC---CCCCeEEEEE
Q 001764 538 LLTVALIKGDNLAAVDSSGFCDPYVVFT--CNGKS----RTSSIKF----QQCDPMWNEIFEYDAMD---EPPSMLDVEV 604 (1016)
Q Consensus 538 ~L~V~v~~A~~L~~~d~~g~sDPyv~v~--~~~~~----~~T~~~~----~t~nP~WnE~f~f~~~~---~~~~~L~i~V 604 (1016)
.+.|+|..+.+++........|-||.+. .|++. ..|+... -...+.|||.++|++.- +...+|.|.|
T Consensus 9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl 88 (171)
T cd04012 9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL 88 (171)
T ss_pred cEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence 3899999999999876555678888875 45555 3444221 22357799999998721 3456899999
Q ss_pred EEccCCCC---------CCceeeEEEEEceec
Q 001764 605 YDFDGPFN---------EATSLGHAEINFVKS 627 (1016)
Q Consensus 605 ~D~d~~~~---------~dd~lG~~~i~l~~~ 627 (1016)
|+... .. .+..||.+.++|=+.
T Consensus 89 ~~~~~-~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 89 YGTTS-SPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEec-CCccccccccccceEEEEEeEeeEcc
Confidence 99765 22 346888888887663
No 268
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=92.25 E-value=4.1 Score=39.88 Aligned_cols=118 Identities=23% Similarity=0.310 Sum_probs=77.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE---EEeeecc-CCCCCeeccEEEEEEe----C-----CCCEEEEEEE
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQR---FKTKVVR-KSLSPSWEEEFSFKVE----D-----LKDELVISVL 68 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~~k---~kTkvi~-~t~nP~WnE~f~f~v~----~-----~~~~L~v~V~ 68 (1016)
++.++|.+..++|. .....|+.+..++.. ..|.... .+..-.|||+|.+.+. . ....+.+.|+
T Consensus 8 ~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~ 83 (143)
T PF10358_consen 8 QFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVF 83 (143)
T ss_pred EEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEE
Confidence 47789999999986 234556666666543 4444433 3455789999999871 1 1247889998
Q ss_pred ecCCCCCCceeEEEEeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEEEEEecC
Q 001764 69 DEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHNT 129 (1016)
Q Consensus 69 D~d~~~~d~~lG~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~~~ 129 (1016)
....-++...||.+.+.|.++.... ......-+.|.... .....|.+++.+....
T Consensus 84 ~~~~~~~k~~lG~~~inLaey~~~~-~~~~~~~~~l~~~~-----~~~a~L~isi~~~~~~ 138 (143)
T PF10358_consen 84 EVDGSGKKKVLGKVSINLAEYANED-EEPITVRLLLKKCK-----KSNATLSISISLSELR 138 (143)
T ss_pred EecCCCccceEEEEEEEHHHhhCcC-CCcEEEEEeCccCC-----CCCcEEEEEEEEEECc
Confidence 8753233368999999999997632 12234456666541 3457888888887553
No 269
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=91.79 E-value=0.38 Score=51.71 Aligned_cols=116 Identities=16% Similarity=0.120 Sum_probs=76.5
Q ss_pred CCeEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCee-eeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCC
Q 001764 535 DGWLLTVALIKGDNLAAVDS--SGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPF 611 (1016)
Q Consensus 535 ~~~~L~V~v~~A~~L~~~d~--~g~sDPyv~v~~~~~~-~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~ 611 (1016)
..|+|.++++.+++|.-... .-+.+-||++.++.+. .+|.+.....--.|.|.|..++.+ ...+++-||.|+. -
T Consensus 49 ~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvySW~p-q 125 (442)
T KOG1452|consen 49 STGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYSWPP-Q 125 (442)
T ss_pred ccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc--ceeeeEEEeecCc-h
Confidence 45679999999999965432 4457899999998776 678887777778899999998865 4589999999997 3
Q ss_pred CCCceeeEEEEEceecCCCCceeEEEECCcCCcCcccceEEEEEEEe
Q 001764 612 NEATSLGHAEINFVKSDISDLADVWIPLQGKLAQACQSKLHLRIFLN 658 (1016)
Q Consensus 612 ~~dd~lG~~~i~l~~~~~~~~~~~w~~L~~~~~~~~~g~l~l~~~~~ 658 (1016)
.++.+.-...+.+..+.. ...+.-+.|.- ...|.+-|++-+.
T Consensus 126 ~RHKLC~~g~l~~~~v~r-qspd~~~Al~l----ePrgq~~~r~~~~ 167 (442)
T KOG1452|consen 126 RRHKLCHLGLLEAFVVDR-QSPDRVVALYL----EPRGQPPLRLPLA 167 (442)
T ss_pred hhccccccchhhhhhhhh-cCCcceeeeec----ccCCCCceecccC
Confidence 444443322333333322 22233333321 1235666666553
No 270
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=91.65 E-value=0.8 Score=45.88 Aligned_cols=87 Identities=25% Similarity=0.368 Sum_probs=59.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE----EEeeeccCCCCCeeccEEEEEEe----CCCCEEEEEEEecC
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL--GRQR----FKTKVVRKSLSPSWEEEFSFKVE----DLKDELVISVLDED 71 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~--~~~k----~kTkvi~~t~nP~WnE~f~f~v~----~~~~~L~v~V~D~d 71 (1016)
.++|++....++...+ ....+-|+.+++ |++. ..|+......++.|||-..|++. +.+..|.++||+..
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 4788888888876521 234566777755 4432 34444433468999999999872 44679999999976
Q ss_pred CCC--CCceeEEEEeecccc
Q 001764 72 KYF--NDDFVGFLKIPVSRV 89 (1016)
Q Consensus 72 ~~~--~d~~lG~~~v~l~~l 89 (1016)
... ++..||.+.++|-+.
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred cCCCCcceEEEEEeEEeEcc
Confidence 533 467899999988764
No 271
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=89.66 E-value=3.6 Score=36.66 Aligned_cols=83 Identities=16% Similarity=0.193 Sum_probs=56.1
Q ss_pred CCcEEEEEECCeE-EEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCCCCCceeEEEEeecccccccCCCCCccE
Q 001764 22 SDPYVRLQLGRQR-FKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTA 100 (1016)
Q Consensus 22 ~dPyv~v~~~~~k-~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~v~V~D~d~~~~d~~lG~~~v~l~~l~~~~~~~~~~~ 100 (1016)
.+..|.+.+++.. ..|.-. ...+..|++.|.++++ .+++|.|.||-.|- ...-|-.-+.|.+... ..
T Consensus 9 ~eV~avLklDn~~VgqT~Wk-~~s~q~WDQ~Fti~Ld-RsRELEI~VywrD~---RslCav~~lrLEd~~~-------~~ 76 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWK-PKSNQAWDQSFTLELE-RSRELEIAVYWRDW---RSLCAVKFLKLEDERH-------EV 76 (98)
T ss_pred cceEEEEEEcCeEEeecccc-ccccccccceeEEEee-cccEEEEEEEEecc---hhhhhheeeEhhhhcc-------cc
Confidence 6788899988754 445443 3467889999999994 45699999998775 3356666666666321 11
Q ss_pred EEEccCCCCCCCCCcceEEEEEEEE
Q 001764 101 WHSLQPKNKKSKNKDCGEILLTISF 125 (1016)
Q Consensus 101 w~~L~~~~~~~~~~~~G~I~l~l~~ 125 (1016)
-.+|. .+|.+...+.|
T Consensus 77 ~~~le---------pqg~l~~ev~f 92 (98)
T cd08687 77 QLDME---------PQLCLVAELTF 92 (98)
T ss_pred eeccc---------cccEEEEEEEe
Confidence 23333 45888877777
No 272
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=89.36 E-value=3.6 Score=36.68 Aligned_cols=83 Identities=13% Similarity=0.166 Sum_probs=58.4
Q ss_pred CCcEEEEEECCee-eeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCCCCceeeEEEEEceecCCCCceeEE
Q 001764 558 CDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVW 636 (1016)
Q Consensus 558 sDPyv~v~~~~~~-~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~~dd~lG~~~i~l~~~~~~~~~~~w 636 (1016)
++-.+++.+.++. ..|..+. -.+..|++.|.+++. ...+|.|.||-.|- ..+.|-..+-|.+. .+..-
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~Ld--RsRELEI~VywrD~----RslCav~~lrLEd~----~~~~~ 77 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELE--RSRELEIAVYWRDW----RSLCAVKFLKLEDE----RHEVQ 77 (98)
T ss_pred cceEEEEEEcCeEEeeccccc-cccccccceeEEEee--cccEEEEEEEEecc----hhhhhheeeEhhhh----cccce
Confidence 6778899998766 5565553 368899999999773 46789999998875 24677777777772 22444
Q ss_pred EECCcCCcCcccceEEEEEEE
Q 001764 637 IPLQGKLAQACQSKLHLRIFL 657 (1016)
Q Consensus 637 ~~L~~~~~~~~~g~l~l~~~~ 657 (1016)
++|. .+|.+..++.+
T Consensus 78 ~~le------pqg~l~~ev~f 92 (98)
T cd08687 78 LDME------PQLCLVAELTF 92 (98)
T ss_pred eccc------cccEEEEEEEe
Confidence 5554 35677777766
No 273
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=89.03 E-value=0.37 Score=44.82 Aligned_cols=53 Identities=17% Similarity=0.261 Sum_probs=38.4
Q ss_pred cccceeceeee-eccccceeeeeccEEEEeec---------------cCCceEEEEEecccceEEEEcC
Q 001764 704 LINDFTCHLKR-KMLLQGRLFLSARIIGFHAN---------------LFGHKTNFFFLWEDIEDIQVLP 756 (1016)
Q Consensus 704 l~~~~~c~~~~-~~~~~Grlyis~~~~cF~s~---------------~~g~~t~~~i~~~dI~~i~k~~ 756 (1016)
++-.+.|.+-. .....|++.++.++++|..+ .-.......+|++||..|.+..
T Consensus 2 i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RR 70 (106)
T PF14844_consen 2 ILLSVPCELITPLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRR 70 (106)
T ss_dssp -SEEEEEEEEETTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEE
T ss_pred EEEEEEEEEEEeeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHH
Confidence 44568898877 33467999999999999976 2233455789999999999887
No 274
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=88.89 E-value=1.4 Score=44.92 Aligned_cols=88 Identities=23% Similarity=0.361 Sum_probs=61.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE----EEeeecc--C--CCCCeeccEEEEEEe----CCCCEEEEEE
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL--GRQR----FKTKVVR--K--SLSPSWEEEFSFKVE----DLKDELVISV 67 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~--~~~k----~kTkvi~--~--t~nP~WnE~f~f~v~----~~~~~L~v~V 67 (1016)
.+.|+|.++.+++........|-|+.+.+ |++. ..|+... + ...+.|||-+.|++. +.+..|.|+|
T Consensus 9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl 88 (171)
T cd04012 9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL 88 (171)
T ss_pred cEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence 47899999999998765556788888865 4443 3444322 1 235779999999882 3467999999
Q ss_pred EecCCCC---------CCceeEEEEeecccc
Q 001764 68 LDEDKYF---------NDDFVGFLKIPVSRV 89 (1016)
Q Consensus 68 ~D~d~~~---------~d~~lG~~~v~l~~l 89 (1016)
|+..... .+..||-+.++|-+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 89 YGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEecCCccccccccccceEEEEEeEeeEcc
Confidence 9976433 345788877776553
No 275
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=88.05 E-value=1.6 Score=43.90 Aligned_cols=69 Identities=16% Similarity=0.167 Sum_probs=50.9
Q ss_pred CCCCcEEEEEE--CCeE----EEeeeccCCCCCeeccEEEEEEe----CCCCEEEEEEEecCCCCCCceeEEEEeeccc
Q 001764 20 GYSDPYVRLQL--GRQR----FKTKVVRKSLSPSWEEEFSFKVE----DLKDELVISVLDEDKYFNDDFVGFLKIPVSR 88 (1016)
Q Consensus 20 g~~dPyv~v~~--~~~k----~kTkvi~~t~nP~WnE~f~f~v~----~~~~~L~v~V~D~d~~~~d~~lG~~~v~l~~ 88 (1016)
..+|-||.+++ +++. ..|+.+.-+..+.|||-..|++. +.+..|.|+||+...-++...+|.+.++|-+
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 34788888876 4432 35555555667899999999983 4468999999998764566789999998765
No 276
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=87.27 E-value=2.4 Score=41.76 Aligned_cols=55 Identities=16% Similarity=0.285 Sum_probs=39.2
Q ss_pred eeecCCCC-CCCeeeEEEEEEee---CCCCCeEEEEEEEccCCCCCC----ceeeEEEEEceec
Q 001764 572 TSSIKFQQ-CDPMWNEIFEYDAM---DEPPSMLDVEVYDFDGPFNEA----TSLGHAEINFVKS 627 (1016)
Q Consensus 572 ~T~~~~~t-~nP~WnE~f~f~~~---~~~~~~L~i~V~D~d~~~~~d----d~lG~~~i~l~~~ 627 (1016)
.|+...-+ .+|.|||.++|++. -+....|.|.||+.+. .... ..||.+.++|-+.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~-~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDS-KKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEEC-STTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecC-CCccccceeEEEEEEEEeECC
Confidence 45555555 79999999999872 2456789999999876 3443 5899999988775
No 277
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=86.81 E-value=6.4 Score=40.22 Aligned_cols=69 Identities=17% Similarity=0.232 Sum_probs=44.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEE--ECCee---eeeecCCCCCCCeeeEEEEEEee-C--CCCCeEEEEEEEcc
Q 001764 539 LTVALIKGDNLAAVDSSGFCDPYVVFT--CNGKS---RTSSIKFQQCDPMWNEIFEYDAM-D--EPPSMLDVEVYDFD 608 (1016)
Q Consensus 539 L~V~v~~A~~L~~~d~~g~sDPyv~v~--~~~~~---~~T~~~~~t~nP~WnE~f~f~~~-~--~~~~~L~i~V~D~d 608 (1016)
++|+|.++.++ ..+.....--||.+. .|++. .+|+.+.-+.+|.|||.+.|++. . +...+|.|.||+..
T Consensus 12 friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 12 FRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred EEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 88898888743 322222222455543 24443 46666666778999999999872 2 34668999999963
No 278
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=86.06 E-value=4.2 Score=37.36 Aligned_cols=71 Identities=20% Similarity=0.267 Sum_probs=48.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE--CCee----eeeecCCCCCCCeeeEEEEEEee-C--CCCCeEEEEEEEccC
Q 001764 539 LTVALIKGDNLAAVDSSGFCDPYVVFTC--NGKS----RTSSIKFQQCDPMWNEIFEYDAM-D--EPPSMLDVEVYDFDG 609 (1016)
Q Consensus 539 L~V~v~~A~~L~~~d~~g~sDPyv~v~~--~~~~----~~T~~~~~t~nP~WnE~f~f~~~-~--~~~~~L~i~V~D~d~ 609 (1016)
+.+++..+++.+.......+|-||.+.+ |++. ..|+.+.-...+.|||..+|++. . +....|.|.||+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 5677777777766543333578888764 5554 45666665666999999999762 1 345689999998643
No 279
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=84.34 E-value=47 Score=33.22 Aligned_cols=145 Identities=14% Similarity=0.192 Sum_probs=94.6
Q ss_pred eEEEecChhhhhhccCCCCCchhHHHHHhcCCcceeeccccccCCCCceEEEEEEEeecC-------cCC-cceeEeEEE
Q 001764 257 DQMYVIAPQDLNTLLFSPDSNFPRTWAEEQGNTELQIGPWRFENGCESLKRDVTYIKAAN-------KLI-KATKGFEEQ 328 (1016)
Q Consensus 257 ~~~~~~~~~~l~~llf~~~s~f~~~~~~~~~~~~~~~~~w~~~~~~~~~~R~~~y~~~~~-------~~~-k~~~~~e~q 328 (1016)
...|+.++++++.++.+ -.||....+..+..+.....-....++ ....+.-..+.. +.+ ..+..++++
T Consensus 4 ~~~~~~~~~~v~~~~~d--~~y~~~r~~~~g~~~~~~~~~~~~~~g--~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~e 79 (159)
T PF10698_consen 4 SVEYPAPVERVWAAFTD--EDYWEARCAALGADNAEVESFEVDGDG--VRVTVRQTVPADKLPSAARKFVGGDLRVTRTE 79 (159)
T ss_pred EEEcCCCHHHHHHHHcC--HHHHHHHHHHcCCCCceEEEEEEcCCe--EEEEEEEecChhhCCHHHHHhcCCCeEEEEEE
Confidence 45789999999999986 468888777766655555544333333 333333333321 223 467778888
Q ss_pred EEEeeCCceEEEEEEeeCCCCCCCCeEEEEEEEEeecCCCCCCCCCeeEEEEEEEEEEEEeeeeehhhccchHHHHHHHH
Q 001764 329 TYLKADGKVFAILASVSTPEVMYGGSFKTELLFCITPGPELSSGEQSSHLVISWRMNFLQSTMMKGMIENGARSALRETY 408 (1016)
Q Consensus 329 ~~~~~~~~~~~v~~~~~tpdvP~g~~F~v~~~y~i~~g~~~~~~~~~~~l~i~~~v~~~~s~~~k~~Ie~~a~~g~~~~~ 408 (1016)
+....++..+.-..++..+ |....+.-.+.+.+ ....|++.+...+.-.= .+|-++||+-+...+...+
T Consensus 80 ~w~~~~~g~~~g~~~~~~~----G~P~~~~G~~~L~~------~~~gt~~~~~g~v~v~V-PlvGgkiE~~v~~~~~~~~ 148 (159)
T PF10698_consen 80 TWTPLDDGRRTGTFTVSIP----GAPVSISGTMRLRP------DGGGTRLTVEGEVKVKV-PLVGGKIEKAVAENLRKLL 148 (159)
T ss_pred EEecCCCCeEEEEEEEEec----CceEEEEEEEEEec------CCCCEEEEEEEEEEEEE-ccccHHHHHHHHHHHHHHH
Confidence 8754456666666666655 55667777777773 55678887777664321 5899999999998887777
Q ss_pred HHHHHHHh
Q 001764 409 EQFATFLS 416 (1016)
Q Consensus 409 ~~~~~~l~ 416 (1016)
..-.+...
T Consensus 149 ~~e~~~~~ 156 (159)
T PF10698_consen 149 EAEQEFTA 156 (159)
T ss_pred HHHHHHHH
Confidence 66555443
No 280
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.
Probab=84.24 E-value=3.4 Score=37.11 Aligned_cols=41 Identities=20% Similarity=0.197 Sum_probs=30.9
Q ss_pred cceeeeeccEEEEeeccCCceEEEEEecccceEEEEcCCcc
Q 001764 719 QGRLFLSARIIGFHANLFGHKTNFFFLWEDIEDIQVLPPSL 759 (1016)
Q Consensus 719 ~Grlyis~~~~cF~s~~~g~~t~~~i~~~dI~~i~k~~~~~ 759 (1016)
.|++|+|.+.+||.-+.-.....+.||+.+|..++.....+
T Consensus 37 ~G~l~LTsHRliw~d~~~~~~~s~~l~L~~i~~~e~~~gf~ 77 (89)
T PF11605_consen 37 NGRLYLTSHRLIWVDDSDPSKHSIALPLSLISHIEYSAGFL 77 (89)
T ss_dssp CEEEEEESSEEEEEESSGHCHH-EEEEGGGEEEEEEE-STT
T ss_pred CCEEEEEeeEEEEEcCCCCceeEEEEEchHeEEEEEEcccc
Confidence 49999999999997554333346899999999998777543
No 281
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=83.57 E-value=6.2 Score=40.30 Aligned_cols=69 Identities=16% Similarity=0.240 Sum_probs=44.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE---EEeeeccCCCCCeeccEEEEEEe----CCCCEEEEEEEecC
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL--GRQR---FKTKVVRKSLSPSWEEEFSFKVE----DLKDELVISVLDED 71 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~--~~~k---~kTkvi~~t~nP~WnE~f~f~v~----~~~~~L~v~V~D~d 71 (1016)
.++|+|..+.+ +..+......-||.+.+ |++. .+|+....+.+|.|||-+.|++. +....|.|+||+..
T Consensus 11 ~friki~~~~~-~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGIDI-PVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeecc-cCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 36788888873 33332222334555543 4432 35555555678999999999882 34689999999964
No 282
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=79.92 E-value=3.4 Score=44.70 Aligned_cols=112 Identities=18% Similarity=0.154 Sum_probs=69.3
Q ss_pred EEEEEEEeecCCCCCC--CCCCCcEEEEEECCe-EEEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCCCCCcee
Q 001764 3 LVVRVIEARNIPAMDQ--NGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFV 79 (1016)
Q Consensus 3 L~V~V~~Ar~L~~~d~--~g~~dPyv~v~~~~~-k~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~v~V~D~d~~~~d~~l 79 (1016)
|.++++.+|+|.-... +-..+-||.+..+.+ +.||.+-....--.|.|.|+.++... ..+.+-||.|+.-.++++.
T Consensus 53 L~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~-~vl~~lvySW~pq~RHKLC 131 (442)
T KOG1452|consen 53 LYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI-EVLHYLVYSWPPQRRHKLC 131 (442)
T ss_pred EEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccc-eeeeEEEeecCchhhcccc
Confidence 7799999999954333 445788999998754 45666554455557999999988543 4778889888875445532
Q ss_pred EEEEeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEEEEE
Q 001764 80 GFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (1016)
Q Consensus 80 G~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~ 126 (1016)
-.-.+.+..+... ....-+.|+- ..+|++-+++.+.
T Consensus 132 ~~g~l~~~~v~rq----spd~~~Al~l-------ePrgq~~~r~~~~ 167 (442)
T KOG1452|consen 132 HLGLLEAFVVDRQ----SPDRVVALYL-------EPRGQPPLRLPLA 167 (442)
T ss_pred ccchhhhhhhhhc----CCcceeeeec-------ccCCCCceecccC
Confidence 2222333333221 1233344442 3467888877664
No 283
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=77.95 E-value=9.3 Score=37.52 Aligned_cols=54 Identities=20% Similarity=0.363 Sum_probs=39.4
Q ss_pred EeeeccCC-CCCeeccEEEEEEe----CCCCEEEEEEEecCCCCCC----ceeEEEEeecccc
Q 001764 36 KTKVVRKS-LSPSWEEEFSFKVE----DLKDELVISVLDEDKYFND----DFVGFLKIPVSRV 89 (1016)
Q Consensus 36 kTkvi~~t-~nP~WnE~f~f~v~----~~~~~L~v~V~D~d~~~~d----~~lG~~~v~l~~l 89 (1016)
.|+...-+ .++.|||.+.|++. +.+..|.|+||........ ..||-+.++|-+.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 56555555 79999999999983 4567999999998764444 6899999987664
No 284
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=76.60 E-value=11 Score=34.55 Aligned_cols=69 Identities=28% Similarity=0.410 Sum_probs=45.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE----EEeeeccCCCCCeeccEEEEEEe----CCCCEEEEEEEecC
Q 001764 3 LVVRVIEARNIPAMDQNGYSDPYVRLQL--GRQR----FKTKVVRKSLSPSWEEEFSFKVE----DLKDELVISVLDED 71 (1016)
Q Consensus 3 L~V~V~~Ar~L~~~d~~g~~dPyv~v~~--~~~k----~kTkvi~~t~nP~WnE~f~f~v~----~~~~~L~v~V~D~d 71 (1016)
+.+.+..+++.+.......++-|+.+++ |++. ..|+.+.-...+.|||-..|++. +.+..|.++||+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 4566677777655443323578888866 4432 34554444556899999999872 34679999999854
No 285
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=73.23 E-value=88 Score=29.87 Aligned_cols=138 Identities=9% Similarity=0.045 Sum_probs=71.0
Q ss_pred cccccCChhheeeecCCChhHHHHHHHcCcceeeecccccCCCCceEEEEEEEEeeccCCCccccCceEEEEeccCCCcE
Q 001764 856 SSVLPVPMSFFMELFGGGELERAVMEKAGCVSYSCSSWESEKLDVYERQIYYRFDKCISRYRGEVTSTQQKSPLPNGNGW 935 (1016)
Q Consensus 856 ~~~~p~~~~~~f~lF~~~~~~~~~~~~~g~~~~~~~~W~~~~~~~~~R~~sy~~~~~~~~~~~~v~~~q~~~~~~~~~~~ 935 (1016)
+..++++++.+|.++.|-....++.-. +.++ .+ .+.+.. .+..+ ..+++.+...+..-......+...+
T Consensus 6 ~~~i~a~~e~v~~~l~D~~~~~~w~p~--~~~~---~~--~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (144)
T cd05018 6 EFRIPAPPEEVWAALNDPEVLARCIPG--CESL---EK--IGPNEY--EATVK--LKVGPVKGTFKGKVELSDLDPPESY 74 (144)
T ss_pred EEEecCCHHHHHHHhcCHHHHHhhccc--hhhc---cc--cCCCeE--EEEEE--EEEccEEEEEEEEEEEEecCCCcEE
Confidence 346889999999999886644333321 1111 11 111211 12222 1123333222211111111222344
Q ss_pred EEEEEEEeCCCCCCCceEEEEEEEEEeCCCCCCccEEEEEEEEEEeeccchhhhhhhhhHHhHHHHHHHHHHHHHhhh
Q 001764 936 LVEEVMTLHGVPLGDYFNLHLRYQVEDSPSRPKGCLAQVYLGVAWLKSTRHQKRITKNIVSNLEDRLRVKLSVIEKEF 1013 (1016)
Q Consensus 936 vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~~~c~l~V~~~V~w~Kst~~K~~Ie~~~~~~~~~~~~~~~~~~~~ev 1013 (1016)
.+.... .+.+..+.....|.|+.. . ++|+|.....+...+ .++.+...-.-...++.++..++-+++.+
T Consensus 75 ~~~~~~----~~~~~~~~~~~~~~l~~~-~--~gT~v~~~~~~~~~g--~l~~l~~~~~~~~~~~~~~~~~~~l~~~~ 143 (144)
T cd05018 75 TITGEG----KGGAGFVKGTARVTLEPD-G--GGTRLTYTADAQVGG--KLAQLGSRLIDGAARKLINQFFENLASKI 143 (144)
T ss_pred EEEEEE----cCCCceEEEEEEEEEEec-C--CcEEEEEEEEEEEcc--ChhhhCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444322 222556789999999987 3 689999888888754 34444444444444555666666666554
No 286
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=71.62 E-value=16 Score=37.59 Aligned_cols=55 Identities=16% Similarity=0.284 Sum_probs=33.1
Q ss_pred eeeecCCCCCCCeeeEEEEEEeeCC--CCCeEEEEEEEccCCCC-C--CceeeEEEEEcee
Q 001764 571 RTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDFDGPFN-E--ATSLGHAEINFVK 626 (1016)
Q Consensus 571 ~~T~~~~~t~nP~WnE~f~f~~~~~--~~~~L~i~V~D~d~~~~-~--dd~lG~~~i~l~~ 626 (1016)
+.|.+..++.+|.|+|+|.+++..+ ....|.|++++... -. + ...+|.+.++|-+
T Consensus 61 ~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~-~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 61 YYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSC-KESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE----SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeecc-ccccCccceeEEEEEEeee
Confidence 7888999999999999999988554 35579999998654 11 1 1578888888777
No 287
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=69.85 E-value=60 Score=32.91 Aligned_cols=79 Identities=16% Similarity=0.182 Sum_probs=54.8
Q ss_pred CcEEEEEECCee-eeeecCC--CCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCCCCceeeEEEEEceecCCC--Cc-
Q 001764 559 DPYVVFTCNGKS-RTSSIKF--QQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDIS--DL- 632 (1016)
Q Consensus 559 DPyv~v~~~~~~-~~T~~~~--~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~~dd~lG~~~i~l~~~~~~--~~- 632 (1016)
.=|++|.++++. .+|+... ....=.+||.|.+.+.. ..+.|.|+||.... ..+..|+++.+++-..... ..
T Consensus 38 ~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~-~Pesi~l~i~E~~~--~~~~~la~v~vpvP~~~~~~~~~~ 114 (168)
T PF15625_consen 38 RYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITR-WPESIKLEIYEKSG--LSDRLLAEVFVPVPGSTVHTSTDN 114 (168)
T ss_pred eEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEec-CCCEEEEEEEEccC--ccceEEEEEEeeCCCCcccccccC
Confidence 368888888887 4444433 33334578999998855 57899999999875 5677999999998774332 11
Q ss_pred -eeEEEECC
Q 001764 633 -ADVWIPLQ 640 (1016)
Q Consensus 633 -~~~w~~L~ 640 (1016)
...|+...
T Consensus 115 ~~~~~~eFs 123 (168)
T PF15625_consen 115 VPLEEYEFS 123 (168)
T ss_pred CceEeEEEc
Confidence 45566654
No 288
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=69.79 E-value=84 Score=31.82 Aligned_cols=69 Identities=12% Similarity=0.276 Sum_probs=52.7
Q ss_pred CCCcEEEEEECCeE-EEeeeccCC--CCCeeccEEEEEEeCCCCEEEEEEEecCCCCCCceeEEEEeeccccc
Q 001764 21 YSDPYVRLQLGRQR-FKTKVVRKS--LSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGFLKIPVSRVF 90 (1016)
Q Consensus 21 ~~dPyv~v~~~~~k-~kTkvi~~t--~nP~WnE~f~f~v~~~~~~L~v~V~D~d~~~~d~~lG~~~v~l~~l~ 90 (1016)
...-|+++.++++. .+|+...-+ ..=.+||.|.+.+...-..|.+.||.... ..+..|+++.+|+-...
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGST 107 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCCc
Confidence 35678999998765 555544332 22357899999997778899999999887 67889999999987754
No 289
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=68.34 E-value=58 Score=33.77 Aligned_cols=55 Identities=18% Similarity=0.189 Sum_probs=38.6
Q ss_pred eeeecCCCCCCCeeeEEEEEEeeCC--CCCeEEEEEEEccCCCCCC---ceeeEEEEEce
Q 001764 571 RTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDFDGPFNEA---TSLGHAEINFV 625 (1016)
Q Consensus 571 ~~T~~~~~t~nP~WnE~f~f~~~~~--~~~~L~i~V~D~d~~~~~d---d~lG~~~i~l~ 625 (1016)
++|.+...+.+|.|+|++.+.+..+ ....|.++++..-..-.+| ..+|-+-++|-
T Consensus 55 ~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 55 YKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred EEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 7899999999999999999987544 4567888887743200122 35676666664
No 290
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=66.14 E-value=52 Score=33.99 Aligned_cols=38 Identities=16% Similarity=0.303 Sum_probs=30.6
Q ss_pred EEEeeeccCCCCCeeccEEEEEEeC---CCCEEEEEEEecC
Q 001764 34 RFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDED 71 (1016)
Q Consensus 34 k~kTkvi~~t~nP~WnE~f~f~v~~---~~~~L~v~V~D~d 71 (1016)
..+|-+...+.+|.|+|++.+.++. .+..|.+++++.-
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S 94 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCS 94 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEee
Confidence 4788888889999999999999943 3567888887743
No 291
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=61.11 E-value=77 Score=32.87 Aligned_cols=38 Identities=16% Similarity=0.309 Sum_probs=31.0
Q ss_pred EEEeeeccCCCCCeeccEEEEEEeC---CCCEEEEEEEecC
Q 001764 34 RFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDED 71 (1016)
Q Consensus 34 k~kTkvi~~t~nP~WnE~f~f~v~~---~~~~L~v~V~D~d 71 (1016)
..+|-+...+.+|.|+|++.+.++. .+..|.+++++..
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S 94 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRS 94 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeec
Confidence 5788888889999999999999943 3578889988743
No 292
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=59.37 E-value=47 Score=34.27 Aligned_cols=54 Identities=17% Similarity=0.252 Sum_probs=37.1
Q ss_pred eeeecCCCCCCCeeeEEEEEEeeCC--CCCeEEEEEEEccCCCCC--CceeeEEEEEce
Q 001764 571 RTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDFDGPFNE--ATSLGHAEINFV 625 (1016)
Q Consensus 571 ~~T~~~~~t~nP~WnE~f~f~~~~~--~~~~L~i~V~D~d~~~~~--dd~lG~~~i~l~ 625 (1016)
++|.+...+.+|.|+|++.+.+..+ ....|.++++..-. ..+ ...+|-+-++|-
T Consensus 55 ~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~-~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 55 YRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCST-KDKGEKKLFGFSFVPLM 112 (189)
T ss_pred EEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeee-ccCCCCCceEEEEEeec
Confidence 7899999999999999999987544 35568887776432 111 134555555553
No 293
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=59.19 E-value=24 Score=36.24 Aligned_cols=55 Identities=13% Similarity=0.269 Sum_probs=31.3
Q ss_pred EEEeeeccCCCCCeeccEEEEEEeC---CCCEEEEEEEecCCCC-C--CceeEEEEeeccc
Q 001764 34 RFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKYF-N--DDFVGFLKIPVSR 88 (1016)
Q Consensus 34 k~kTkvi~~t~nP~WnE~f~f~v~~---~~~~L~v~V~D~d~~~-~--d~~lG~~~v~l~~ 88 (1016)
...|.+...+.+|.|+|+|.+.++. .+..|.|++++...-. + +..+|-+-+||-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 3667777788999999999999953 3468889999855311 1 1567777777655
No 294
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=58.41 E-value=9.4 Score=47.51 Aligned_cols=101 Identities=13% Similarity=0.205 Sum_probs=75.0
Q ss_pred CCCcEEEEEECCee-eeeecCCCC-CCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCCCCceeeEEEEEceecCCCCcee
Q 001764 557 FCDPYVVFTCNGKS-RTSSIKFQQ-CDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLAD 634 (1016)
Q Consensus 557 ~sDPyv~v~~~~~~-~~T~~~~~t-~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~~dd~lG~~~i~l~~~~~~~~~~ 634 (1016)
..++|+.+.+.... .+|....+. .+|.|.+.|..- .......+.+.|-+.+. .+....+|.+.+++..+..+....
T Consensus 137 ~~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~-~~h~~g~v~~~~~~~~~-~G~s~~w~~v~~s~~~~~~~~~~~ 214 (887)
T KOG1329|consen 137 TLENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIG-FAHKAGYVIFRVKGARV-PGWSKRWGRVKISFLQYCSGHRIG 214 (887)
T ss_pred hccchheeeechhhhhchhhhhcccccchhhhhcccc-ccccccEEEEeecCCcc-ccceeEEEEeccchhhhhcccccc
Confidence 47899999988766 677777666 899999999873 34446678899888887 665679999999999988877889
Q ss_pred EEEECCcCCcCcc--cceEEEEEEEee
Q 001764 635 VWIPLQGKLAQAC--QSKLHLRIFLNN 659 (1016)
Q Consensus 635 ~w~~L~~~~~~~~--~g~l~l~~~~~~ 659 (1016)
.|+++....+... ...+++++.+..
T Consensus 215 ~~~~Il~~d~~~~~~~~~~~~~~~~~~ 241 (887)
T KOG1329|consen 215 GWFPILDNDGKPHQKGSNESLRLGFTP 241 (887)
T ss_pred ceeeeeccCCccccCCcccceEEeeEe
Confidence 9999875433333 334555555443
No 295
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=57.82 E-value=34 Score=41.53 Aligned_cols=97 Identities=16% Similarity=0.345 Sum_probs=64.4
Q ss_pred ceeceeeeeccccceeeeecc----EEEEeeccC------------CceEEEEEecccceEEEEcCCcccCCCCCe-EEE
Q 001764 707 DFTCHLKRKMLLQGRLFLSAR----IIGFHANLF------------GHKTNFFFLWEDIEDIQVLPPSLSSMGSPV-IVM 769 (1016)
Q Consensus 707 ~~~c~~~~~~~~~Grlyis~~----~~cF~s~~~------------g~~t~~~i~~~dI~~i~k~~~~~~~~~~~~-~~i 769 (1016)
.|.|.|+.+ .|.+||+.. .++|...-. ....-+.||..||.+++|... +|=-. +++
T Consensus 520 ~F~AR~~Gk---kG~v~I~ssa~~P~l~Ftt~~~~~~~d~~~~~~~~~~~~wsv~V~dI~elkKvgG----lGWK~KLvV 592 (642)
T PF11696_consen 520 EFPARYKGK---KGHVYIDSSATPPVLSFTTDKTSSLGDLRLEEREKGHPLWSVPVADIAELKKVGG----LGWKGKLVV 592 (642)
T ss_pred eeeeecCCc---cceEEEecCCCCcEEEEeccCccccccccccccccCceeeEEEhHHhhhhhhccc----ccceeeEEE
Confidence 377887764 499999933 788987511 234569999999999999983 33222 333
Q ss_pred EEeecCCCCCCCCceee-ccCCceEEEeccCcCHHHHHHHHHHH
Q 001764 770 TLRQGRGMDARHGAKTQ-DEEGRLKFHFHSFVSYNVAHRTIMAL 812 (1016)
Q Consensus 770 ~l~~~~~~~~~~~~~~~-~~~~~~~~~f~sf~~rd~~~~~i~~~ 812 (1016)
-+-.| +-....|...+ +..| +.|.++-...||+.|+-|.++
T Consensus 593 GWa~g-~kEv~DGL~I~g~~~g-~~y~lTA~~~RDeLFNRLiAm 634 (642)
T PF11696_consen 593 GWALG-EKEVVDGLVIVGDEPG-QEYHLTAMPRRDELFNRLIAM 634 (642)
T ss_pred eeecC-CcccccceEEeccCCC-CEEEEEecchHHHHHHHHHhc
Confidence 32221 11233444444 5545 599999999999999888765
No 296
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=55.74 E-value=3.9 Score=49.32 Aligned_cols=97 Identities=14% Similarity=0.118 Sum_probs=67.6
Q ss_pred CCCcEEEEEECCee-eeeecCCCCCCCeeeEEEEEEeeCCCCCeEEEEEEEccCCCCCCceeeEEEEEceecCC-CCcee
Q 001764 557 FCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDI-SDLAD 634 (1016)
Q Consensus 557 ~sDPyv~v~~~~~~-~~T~~~~~t~nP~WnE~f~f~~~~~~~~~L~i~V~D~d~~~~~dd~lG~~~i~l~~~~~-~~~~~ 634 (1016)
.-|||+.|.+.-.. ..+.+...+..|.|+++|..++.. ...+.|.|+.... ...+++...+.+..+++.. .....
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~--~~~~~i~v~~~~~-~~~~~~~a~~~~~~e~~k~~~~~~~ 103 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA--GGAKNIIVLLKSP-DPKALSEAQLSLQEESQKLLALEQR 103 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeeec--CCceEEEEEecCC-cchhhHHHhHHHHHHHHHHHhhhhh
Confidence 45789888887555 456668899999999999998644 4578888888654 4556566666666555442 23447
Q ss_pred EEEECCcCCcCcccceEEEEEEEeecCC
Q 001764 635 VWIPLQGKLAQACQSKLHLRIFLNNTKG 662 (1016)
Q Consensus 635 ~w~~L~~~~~~~~~g~l~l~~~~~~~~~ 662 (1016)
.|..++. .|+++..+.+.++-.
T Consensus 104 ~w~~~~~------~g~~~~~~~~~~~~~ 125 (694)
T KOG0694|consen 104 LWVLIEE------LGTLLKPAALTGTLE 125 (694)
T ss_pred hcccccc------ccceeeeecccCcCC
Confidence 7988754 367888887776544
No 297
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=54.30 E-value=2.1e+02 Score=29.32 Aligned_cols=143 Identities=7% Similarity=-0.066 Sum_probs=72.2
Q ss_pred cccccCChhheeeecCCChhHHHHHHHcCcceeeecccccCCCCceEEEEEEEEeeccCCCcc-ccCceEEEEeccCCCc
Q 001764 856 SSVLPVPMSFFMELFGGGELERAVMEKAGCVSYSCSSWESEKLDVYERQIYYRFDKCISRYRG-EVTSTQQKSPLPNGNG 934 (1016)
Q Consensus 856 ~~~~p~~~~~~f~lF~~~~~~~~~~~~~g~~~~~~~~W~~~~~~~~~R~~sy~~~~~~~~~~~-~v~~~q~~~~~~~~~~ 934 (1016)
..+++++++.++.++.+-.....+.... .+..+-. . .+.. ..+.|..-...-|+.. ............+...
T Consensus 46 ~~~i~~s~e~v~~vi~d~e~~~~w~~~~--~~~~vie--~--~~~~-~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~~ 118 (195)
T cd08876 46 VAEVDASIEAFLALLRDTESYPQWMPNC--KESRVLK--R--TDDN-ERSVYTVIDLPWPVKDRDMVLRSTTEQDADDGS 118 (195)
T ss_pred EEEEeCCHHHHHHHHhhhHhHHHHHhhc--ceEEEee--c--CCCC-cEEEEEEEecccccCCceEEEEEEEEEcCCCCE
Confidence 3468899999999877765555555432 2222211 1 1111 2334442111112211 1111111222222345
Q ss_pred EEEEEEEEeCCCCCC-C---ceEEEEEEEEEeCCCCCCccEEEEEEEEEEeeccchhhhhhhhhHHhHHHHHHHHHHHHH
Q 001764 935 WLVEEVMTLHGVPLG-D---YFNLHLRYQVEDSPSRPKGCLAQVYLGVAWLKSTRHQKRITKNIVSNLEDRLRVKLSVIE 1010 (1016)
Q Consensus 935 ~vv~~~~~~~dVPyg-d---~F~v~~r~~i~~~~~~~~~c~l~V~~~V~w~Kst~~K~~Ie~~~~~~~~~~~~~~~~~~~ 1010 (1016)
+++......+++|-. + .+.....|.|++.+. ++|+|.....+++.+ .+-+.+|..-+. .....+++.++
T Consensus 119 ~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~--~~t~vt~~~~~dp~g-~iP~~lv~~~~~----~~~~~~l~~l~ 191 (195)
T cd08876 119 VTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGN--GKTRVTYQAYADPGG-SIPGWLANAFAK----DAPYNTLENLR 191 (195)
T ss_pred EEEEeecCCccCCCCCCeEEceeceeeEEEEECCC--CeEEEEEEEEeCCCC-CCCHHHHHHHHH----HHHHHHHHHHH
Confidence 555444333335633 2 355667799999864 789999999999954 445555555543 33345555555
Q ss_pred hh
Q 001764 1011 KE 1012 (1016)
Q Consensus 1011 ~e 1012 (1016)
++
T Consensus 192 ~~ 193 (195)
T cd08876 192 KQ 193 (195)
T ss_pred Hh
Confidence 44
No 298
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=53.10 E-value=2.2e+02 Score=27.55 Aligned_cols=64 Identities=9% Similarity=-0.052 Sum_probs=41.8
Q ss_pred eCCCCCCCceEEEEEEEEEeCCCCCCccEEEEEEEEEEeec--cchhhhhhhhhHHhHHHHHHHHHHHHHhhh
Q 001764 943 LHGVPLGDYFNLHLRYQVEDSPSRPKGCLAQVYLGVAWLKS--TRHQKRITKNIVSNLEDRLRVKLSVIEKEF 1013 (1016)
Q Consensus 943 ~~dVPygd~F~v~~r~~i~~~~~~~~~c~l~V~~~V~w~Ks--t~~K~~Ie~~~~~~~~~~~~~~~~~~~~ev 1013 (1016)
-.+.+.+....+...|.++..+ .+|+|.+...+...+. .+++.+|++.+ ++.++.+++-+++.+
T Consensus 79 g~~~~~~g~~~~~~~~~l~~~~---~gT~v~~~~~~~~~g~l~~l~~~~v~~~~----~~~~~~~~~~l~~~~ 144 (146)
T cd07823 79 GKDARGQGTAEATVTLRLSPAG---GGTRVTVDTDLALTGKLAQFGRGGIGDVA----GRLLAQFAANLEARL 144 (146)
T ss_pred EecCCCcceEEEEEEEEEEecC---CcEEEEEEEEEEEeeEhHHhChhHHHHHH----HHHHHHHHHHHHHHh
Confidence 3335555666888888898733 5899999999988773 45666666655 444455555555443
No 299
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=52.92 E-value=20 Score=44.82 Aligned_cols=103 Identities=15% Similarity=0.198 Sum_probs=76.6
Q ss_pred CCcEEEEEECCeE-EEeeeccCC-CCCeeccEEEEEEeCCCCEEEEEEEecCCCCCCceeEEEEeecccccccCCCCCcc
Q 001764 22 SDPYVRLQLGRQR-FKTKVVRKS-LSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPT 99 (1016)
Q Consensus 22 ~dPyv~v~~~~~k-~kTkvi~~t-~nP~WnE~f~f~v~~~~~~L~v~V~D~d~~~~d~~lG~~~v~l~~l~~~~~~~~~~ 99 (1016)
.++|+.+.+.... .+|....+. .+|.|.+.|..........+++.|-+.+..+....+|.+.++...+..+ ....
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~---~~~~ 214 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSG---HRIG 214 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhcc---cccc
Confidence 4889999886554 667777766 7899999998888778889999999988877688999999999988763 3456
Q ss_pred EEEEccCCCCCCCCCcceEEEEEEEEEec
Q 001764 100 AWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (1016)
Q Consensus 100 ~w~~L~~~~~~~~~~~~G~I~l~l~~~~~ 128 (1016)
.|+.+....++.. ...-.+.+.+.|.+.
T Consensus 215 ~~~~Il~~d~~~~-~~~~~~~~~~~~~~~ 242 (887)
T KOG1329|consen 215 GWFPILDNDGKPH-QKGSNESLRLGFTPM 242 (887)
T ss_pred ceeeeeccCCccc-cCCcccceEEeeEee
Confidence 7999886654321 223345555666543
No 300
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=51.57 E-value=1.6e+02 Score=30.93 Aligned_cols=75 Identities=16% Similarity=0.173 Sum_probs=48.1
Q ss_pred cCCCcEEEEE-EEEeCCC-CCCCceEEE---EEEEEEeCCCCCCccEEEEEEEEEEeeccchhhhhhhhhHHhHHHHHHH
Q 001764 930 PNGNGWLVEE-VMTLHGV-PLGDYFNLH---LRYQVEDSPSRPKGCLAQVYLGVAWLKSTRHQKRITKNIVSNLEDRLRV 1004 (1016)
Q Consensus 930 ~~~~~~vv~~-~~~~~dV-Pygd~F~v~---~r~~i~~~~~~~~~c~l~V~~~V~w~Kst~~K~~Ie~~~~~~~~~~~~~ 1004 (1016)
.+++.|++.. ++.-|.. |-.++.+-+ +-|.+++.+.+|+.|++..++.+++. .-+=|..|++..-+.+-+.+..
T Consensus 120 ~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~Dlk-G~lP~~vv~~~~~~~~~~f~~~ 198 (204)
T cd08904 120 YEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELR-GNLSRSVIEKTMPTNLVNLILD 198 (204)
T ss_pred eCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCC-CCCCHHHHHHHhHHHHHHHHHH
Confidence 3566677643 4444443 445555544 56999999887789999999998884 2234667776655555544444
Q ss_pred H
Q 001764 1005 K 1005 (1016)
Q Consensus 1005 ~ 1005 (1016)
+
T Consensus 199 ~ 199 (204)
T cd08904 199 A 199 (204)
T ss_pred H
Confidence 3
No 301
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=51.31 E-value=53 Score=28.76 Aligned_cols=38 Identities=18% Similarity=0.272 Sum_probs=30.2
Q ss_pred ceeeeeccE--EEEeeccCCceEEEEEecccceEEEEcCC
Q 001764 720 GRLFLSARI--IGFHANLFGHKTNFFFLWEDIEDIQVLPP 757 (1016)
Q Consensus 720 Grlyis~~~--~cF~s~~~g~~t~~~i~~~dI~~i~k~~~ 757 (1016)
|.||+++.+ +-|-.+--+....+.|||.+|...+..+.
T Consensus 14 G~L~l~~d~~~~~W~~~~~~~~~~v~i~~~~I~~lq~Sp~ 53 (79)
T PF08567_consen 14 GTLTLTEDRKPLEWTPKASDGPSTVSIPLNDIKNLQQSPE 53 (79)
T ss_dssp EEEEEETTCSSEEEEECCSSSSSEEEEETTTEEEEEE--T
T ss_pred cEEEEecCCceEEEeecCCCCCceEEEEHHHhhhhccCCC
Confidence 999999999 99988644434479999999999999884
No 302
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=50.62 E-value=2.1e+02 Score=26.80 Aligned_cols=19 Identities=16% Similarity=0.127 Sum_probs=15.3
Q ss_pred cccccCChhheeeecCCCh
Q 001764 856 SSVLPVPMSFFMELFGGGE 874 (1016)
Q Consensus 856 ~~~~p~~~~~~f~lF~~~~ 874 (1016)
+.++++|++.+|+++.+..
T Consensus 6 ~~~i~a~~~~V~~~l~d~~ 24 (140)
T cd07821 6 SVTIDAPADKVWALLSDFG 24 (140)
T ss_pred EEEECCCHHHHHHHHhCcC
Confidence 4568899999999877754
No 303
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=49.52 E-value=35 Score=34.90 Aligned_cols=54 Identities=20% Similarity=0.350 Sum_probs=36.9
Q ss_pred eeeecCCCCCCCeeeEEEEEEeeCC--CCCeEEEEEEEccCCC-----CCCceeeEEEEEcee
Q 001764 571 RTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDFDGPF-----NEATSLGHAEINFVK 626 (1016)
Q Consensus 571 ~~T~~~~~t~nP~WnE~f~f~~~~~--~~~~L~i~V~D~d~~~-----~~dd~lG~~~i~l~~ 626 (1016)
+++.+..+ .+|.|+|+|.+.+..+ ....|.|++++.+. - .....+|-+.++|-+
T Consensus 55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~-~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSS-KKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEcccc-ccccCCCccceEEEEEEeccc
Confidence 55555555 9999999999988443 35679999998664 1 123456666666654
No 304
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=45.59 E-value=2.3e+02 Score=31.69 Aligned_cols=110 Identities=14% Similarity=0.268 Sum_probs=72.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCC--eeccEEEEEEeCCCCEEEEEEEecCCCCCCceeE
Q 001764 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSP--SWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVG 80 (1016)
Q Consensus 3 L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~~k~kTkvi~~t~nP--~WnE~f~f~v~~~~~~L~v~V~D~d~~~~d~~lG 80 (1016)
|-|.|-+-.++. -...-|+.+..|+...+|..+.-+..- .-.|.....+..-+.+|.+.||-... .+..-||
T Consensus 60 LLVeI~EI~~i~-----k~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkL-vkk~hIg 133 (508)
T PTZ00447 60 LLVKINEIFNIN-----KYKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKL-TKKVHIG 133 (508)
T ss_pred EEEEehhhhccc-----cceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEeccc-cceeEEE
Confidence 344444444432 346789999999888888665433222 23455555666778899999998876 4567899
Q ss_pred EEEeecccccccCCCCCccEEEEccCCCCCCCCCcceEEEEEEE
Q 001764 81 FLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTIS 124 (1016)
Q Consensus 81 ~~~v~l~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~ 124 (1016)
.+.+.+..-.-. ...+..+||.+...+ ...++|.|++.
T Consensus 134 dI~InIn~dIId-k~FPKnkWy~c~kDG-----q~~cRIqLSFh 171 (508)
T PTZ00447 134 QIKIDINASVIS-KSFPKNEWFVCFKDG-----QEICKVQMSFY 171 (508)
T ss_pred EEEecccHHHHh-ccCCccceEEEecCC-----ceeeeEEEEeh
Confidence 999988763321 123467899996433 45688888775
No 305
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=44.66 E-value=2.3e+02 Score=29.77 Aligned_cols=64 Identities=8% Similarity=-0.015 Sum_probs=39.7
Q ss_pred CCCcEEEEEEEEeCCCC-CCCceE---EEEEEEEEeCCCCCCccEEEEEEEEEEeeccchhhhhhhhhH
Q 001764 931 NGNGWLVEEVMTLHGVP-LGDYFN---LHLRYQVEDSPSRPKGCLAQVYLGVAWLKSTRHQKRITKNIV 995 (1016)
Q Consensus 931 ~~~~~vv~~~~~~~dVP-ygd~F~---v~~r~~i~~~~~~~~~c~l~V~~~V~w~Kst~~K~~Ie~~~~ 995 (1016)
++..+++......+..| ..++-+ ....|.|++.+.++++|++.-.+.++..++ .=+.+|.+...
T Consensus 125 ~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~-iP~~lvN~~~~ 192 (209)
T cd08905 125 GSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGW-LPKSIINQVLS 192 (209)
T ss_pred CCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCC-CCHHHHHHHhH
Confidence 33344445555555554 345544 457899999876568999999999998554 22334444433
No 306
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=44.41 E-value=3.8e+02 Score=28.11 Aligned_cols=138 Identities=14% Similarity=0.123 Sum_probs=67.7
Q ss_pred ecccccCChhhee-eecCCChhHHHHHHHcCcceeeeccccc-CCCCceEEEEEEEEeeccCCCccccCceE---EEEec
Q 001764 855 YSSVLPVPMSFFM-ELFGGGELERAVMEKAGCVSYSCSSWES-EKLDVYERQIYYRFDKCISRYRGEVTSTQ---QKSPL 929 (1016)
Q Consensus 855 ~~~~~p~~~~~~f-~lF~~~~~~~~~~~~~g~~~~~~~~W~~-~~~~~~~R~~sy~~~~~~~~~~~~v~~~q---~~~~~ 929 (1016)
...+++++++.+| .+|.|-..... -|..+..-+. ...+... .+.|.+..+ ..++.+.+.. .++..
T Consensus 53 ~~~~v~~~~~~l~~~ll~D~~~~~~-------W~~~~~~~~vi~~~~~~~-~i~Y~v~~p--~~~~pv~~RDfV~~r~~~ 122 (209)
T cd08906 53 LKAFMQCPAELVYQEVILQPEKMVL-------WNKTVSACQVLQRVDDNT-LVSYDVAAG--AAGGVVSPRDFVNVRRIE 122 (209)
T ss_pred EEEEEcCCHHHHHHHHHhChhhccc-------cCccchhhhheeeccCCc-EEEEEEccc--cccCCCCCCceEEEEEEE
Confidence 3456788999887 57766431111 1111111110 1111222 244653321 2233444332 23333
Q ss_pred cCCCcEEEE-EEEEeCCCC-CCCceEEE---EEEEEEeCCCCCCccEEEEEEEEEEeeccchhhhhhhhhHHhHHHHHH
Q 001764 930 PNGNGWLVE-EVMTLHGVP-LGDYFNLH---LRYQVEDSPSRPKGCLAQVYLGVAWLKSTRHQKRITKNIVSNLEDRLR 1003 (1016)
Q Consensus 930 ~~~~~~vv~-~~~~~~dVP-ygd~F~v~---~r~~i~~~~~~~~~c~l~V~~~V~w~Kst~~K~~Ie~~~~~~~~~~~~ 1003 (1016)
.++++|++- .++..+.+| ..++-+++ +.|.+...+.++++|++.-.+.++..+ ..=+.+|.+...+..-+.++
T Consensus 123 ~~~~~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G-~lP~~lvN~~~~~~~~~~~~ 200 (209)
T cd08906 123 RRRDRYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKG-RLPRYLIHQSLAATMFEFAS 200 (209)
T ss_pred ecCCcEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCC-CCCHHHHHHHHHHHHHHHHH
Confidence 456666654 444444444 45666666 556666643345899988888888855 22244555544443333333
No 307
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=44.20 E-value=1.5e+02 Score=31.03 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=35.0
Q ss_pred CcEEEEE-EEEeCCCCCC-CceEE---EEEEEEEeCCCCCCccEEEEEEEEEEeec
Q 001764 933 NGWLVEE-VMTLHGVPLG-DYFNL---HLRYQVEDSPSRPKGCLAQVYLGVAWLKS 983 (1016)
Q Consensus 933 ~~~vv~~-~~~~~dVPyg-d~F~v---~~r~~i~~~~~~~~~c~l~V~~~V~w~Ks 983 (1016)
+.|+|.. ...-+..|-. ++-++ ...|.|++.+.++++|++...+.++..++
T Consensus 125 ~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~ 180 (208)
T cd08868 125 NCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGW 180 (208)
T ss_pred CeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCC
Confidence 4565543 3443566644 44444 47899999876568999999999999775
No 308
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=42.31 E-value=1.4e+02 Score=27.91 Aligned_cols=95 Identities=15% Similarity=0.168 Sum_probs=50.1
Q ss_pred EEEEEECC-eEEEeeeccCCCCCeeccEEEEEEeCC--------CCEEEEEEEecCCCCCCceeEEEEeecccccccCCC
Q 001764 25 YVRLQLGR-QRFKTKVVRKSLSPSWEEEFSFKVEDL--------KDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNK 95 (1016)
Q Consensus 25 yv~v~~~~-~k~kTkvi~~t~nP~WnE~f~f~v~~~--------~~~L~v~V~D~d~~~~d~~lG~~~v~l~~l~~~~~~ 95 (1016)
||.+.+-. +.+.|.++. ..+|.+|-+-.|.|.-. +..+.++++..-. .....+|.+.+++..++....
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ll~~~~- 78 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPLLESNG- 78 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHHHH--S-
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhhhcCCC-
Confidence 55555544 456677765 88999998888887322 4788999988663 346689999999999985332
Q ss_pred CCccEEEEccCCCCCCCCCcceEEEEEEEEE
Q 001764 96 SLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (1016)
Q Consensus 96 ~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~ 126 (1016)
.....-..|.+..+ ..-|.|...+++.
T Consensus 79 ~~i~~~~~l~g~~~----~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 79 ERIHGSATLVGVSG----EDFGTLEYWIRLR 105 (107)
T ss_dssp --EEEEEEE-BSSS-----TSEEEEEEEEEE
T ss_pred ceEEEEEEEeccCC----CeEEEEEEEEEec
Confidence 12334455654443 3679888877764
No 309
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=40.00 E-value=96 Score=28.91 Aligned_cols=93 Identities=15% Similarity=0.159 Sum_probs=47.1
Q ss_pred EEEEEECCee-eeeecCCCCCCCeeeEEEEEEeeCC-------CCCeEEEEEEEccCCCCCCceeeEEEEEceecCCCC-
Q 001764 561 YVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDE-------PPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISD- 631 (1016)
Q Consensus 561 yv~v~~~~~~-~~T~~~~~t~nP~WnE~f~f~~~~~-------~~~~L~i~V~D~d~~~~~dd~lG~~~i~l~~~~~~~- 631 (1016)
||.+.+-.-. ..|.++. +.+|.+|-+-.+.+..+ ....+.|+++..-. .....+|.+.+++.++....
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g--~d~~tla~~~i~l~~ll~~~~ 78 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG--SDFETLAAGQISLRPLLESNG 78 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S--S-EEEEEEEEE--SHHHH--S
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc--CCeEEEEEEEeechhhhcCCC
Confidence 4555544433 6666665 89999999988877443 24568899987554 34679999999999965332
Q ss_pred -ceeEEEECCcCCcCcccceEEEEEEE
Q 001764 632 -LADVWIPLQGKLAQACQSKLHLRIFL 657 (1016)
Q Consensus 632 -~~~~w~~L~~~~~~~~~g~l~l~~~~ 657 (1016)
....-..|.+..+. .-|.|...+.+
T Consensus 79 ~~i~~~~~l~g~~~~-~~g~l~y~~rl 104 (107)
T PF11618_consen 79 ERIHGSATLVGVSGE-DFGTLEYWIRL 104 (107)
T ss_dssp --EEEEEEE-BSSS--TSEEEEEEEEE
T ss_pred ceEEEEEEEeccCCC-eEEEEEEEEEe
Confidence 34555666555443 55666665554
No 310
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=39.91 E-value=1.9e+02 Score=32.27 Aligned_cols=111 Identities=13% Similarity=0.126 Sum_probs=74.9
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeecCCCCCCCeeeEEEEEEe-eCCCCCeEEEEEEEccCCCCCCc
Q 001764 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDA-MDEPPSMLDVEVYDFDGPFNEAT 615 (1016)
Q Consensus 537 ~~L~V~v~~A~~L~~~d~~g~sDPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~~-~~~~~~~L~i~V~D~d~~~~~dd 615 (1016)
..|-|.|.+-.++... ..-|+.+..|....+|..+.-+..-.-+=.-.+.+ ....+..|+|.||-... .+..
T Consensus 58 F~LLVeI~EI~~i~k~-----khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkL--vkk~ 130 (508)
T PTZ00447 58 FYLLVKINEIFNINKY-----KHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKL--TKKV 130 (508)
T ss_pred eeEEEEehhhhccccc-----eeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEeccc--ccee
Confidence 3477888777766543 34799999998888886665554444442222222 22345689999998764 5677
Q ss_pred eeeEEEEEcee--cCCCCceeEEEECCcCCcCcccceEEEEEE
Q 001764 616 SLGHAEINFVK--SDISDLADVWIPLQGKLAQACQSKLHLRIF 656 (1016)
Q Consensus 616 ~lG~~~i~l~~--~~~~~~~~~w~~L~~~~~~~~~g~l~l~~~ 656 (1016)
-||.+.+.+.. +...-+...||-+... +...+++.|++.
T Consensus 131 hIgdI~InIn~dIIdk~FPKnkWy~c~kD--Gq~~cRIqLSFh 171 (508)
T PTZ00447 131 HIGQIKIDINASVISKSFPKNEWFVCFKD--GQEICKVQMSFY 171 (508)
T ss_pred EEEEEEecccHHHHhccCCccceEEEecC--CceeeeEEEEeh
Confidence 89999999987 5556677999999543 224567777765
No 311
>PF04707 PRELI: PRELI-like family; InterPro: IPR006797 These proteins contain a conserved region found in the yeast YLR168C gene MSF1 product. The function of this protein is unknown, though it is thought to be involved in intra-mitochondrial protein sorting. GFP-tagged MSF1 localizes to mitochondria and is required for wild-type respiratory growth []. This region is also found in a number of other eukaryotic proteins. The PRELI/MSF1 domain is an eukaryotic protein module which occurs in stand-alone form in several proteins, including the human PRELI protein and the yeast MSF1 protein, and as an amino-terminal domain in an orthologous group of proteins typified by human SEC14L1, which is conserved in all animals. In this group of proteins, the PRELI/MSF1 domain co-occurs with the CRAL-TRIO (see PDOC50191 from PROSITEDOC) and the GOLD domains (see PDOC50866 from PROSITEDOC). The PRELI/MSF1 domain is approximately 170 residues long and is predicted to assume a globular alpha + beta fold with six beta strands and four alpha helices. It has been suggested that the PRELI/MSF1 domain may have a function associated with cellular membrane [].
Probab=39.32 E-value=2.3e+02 Score=28.35 Aligned_cols=64 Identities=13% Similarity=0.174 Sum_probs=52.1
Q ss_pred EEEeCCCCCCCceEEEEEEEEEeCCCCCCccEEEEEEEEEEee-ccchhhhhhhhhHHhHHHHHH
Q 001764 940 VMTLHGVPLGDYFNLHLRYQVEDSPSRPKGCLAQVYLGVAWLK-STRHQKRITKNIVSNLEDRLR 1003 (1016)
Q Consensus 940 ~~~~~dVPygd~F~v~~r~~i~~~~~~~~~c~l~V~~~V~w~K-st~~K~~Ie~~~~~~~~~~~~ 1003 (1016)
++.+..+=|.+++.|+.+-.....+.+|+.|.+.-.+.|.-.+ ...+.+.||+-+++..++.++
T Consensus 77 ~~~t~Nls~~~~~~v~E~~~Y~~~p~np~~T~~~q~a~i~~~~~~~~~~~~iE~~~~~~f~~na~ 141 (157)
T PF04707_consen 77 TTKTRNLSFSSFLSVEETCVYKPHPDNPNWTLFKQEATISIKGSFSGFSSRIEKFSVSRFKSNAK 141 (157)
T ss_pred EEEEEEcccCceeEEEEEEEEEECCCCCCcceEEEEEEEEEeCchhhHhHHHHHHHHHHHHHHHH
Confidence 4567778899999999999999999888999999999999655 345889999877776655553
No 312
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=37.39 E-value=85 Score=32.09 Aligned_cols=51 Identities=16% Similarity=0.303 Sum_probs=32.8
Q ss_pred eeeccCCCCCeeccEEEEEEeC---CCCEEEEEEEecCCC-----CCCceeEEEEeecc
Q 001764 37 TKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKY-----FNDDFVGFLKIPVS 87 (1016)
Q Consensus 37 Tkvi~~t~nP~WnE~f~f~v~~---~~~~L~v~V~D~d~~-----~~d~~lG~~~v~l~ 87 (1016)
+.++....+|.|+|++.+.++. .+..|.|++++-..- .....+|-+-+||-
T Consensus 56 ~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~ 114 (178)
T cd08679 56 TSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLM 114 (178)
T ss_pred EEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEecc
Confidence 4444444899999999999942 357889999986531 11334555555543
No 313
>smart00683 DM16 Repeats in sea squirt COS41.4, worm R01H10.6, fly CG1126 etc.
Probab=37.13 E-value=65 Score=26.11 Aligned_cols=34 Identities=18% Similarity=0.329 Sum_probs=29.1
Q ss_pred ceeeeeccEEEEeeccCCceEEEEEecccceEEEE
Q 001764 720 GRLFLSARIIGFHANLFGHKTNFFFLWEDIEDIQV 754 (1016)
Q Consensus 720 Grlyis~~~~cF~s~~~g~~t~~~i~~~dI~~i~k 754 (1016)
|++++|.-.+.+||..- ....+.|||-.|..|+.
T Consensus 21 G~l~VTNlRiiW~s~~~-~~~NlSIgy~~i~~i~~ 54 (55)
T smart00683 21 GVFFVTNLRLVWHSDTN-PRFNISVGYLQITNVRV 54 (55)
T ss_pred eEEEEEeeEEEEEeCCC-CceEEEEcceeEEEEEe
Confidence 99999999999999763 46789999999988753
No 314
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=32.36 E-value=1e+02 Score=31.64 Aligned_cols=39 Identities=8% Similarity=0.175 Sum_probs=31.4
Q ss_pred eeeecCCCCCCCeeeEEEEEEeeCC--CCCeEEEEEEEccC
Q 001764 571 RTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDFDG 609 (1016)
Q Consensus 571 ~~T~~~~~t~nP~WnE~f~f~~~~~--~~~~L~i~V~D~d~ 609 (1016)
..|.+..++.+|.|+|++.+.+... ....|.|+.++-+.
T Consensus 56 ~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~ 96 (179)
T cd08696 56 AYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISC 96 (179)
T ss_pred EEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeec
Confidence 7888999999999999999987543 34568899988554
No 315
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=31.59 E-value=11 Score=44.66 Aligned_cols=57 Identities=11% Similarity=0.083 Sum_probs=41.4
Q ss_pred CCCcEEEEEECCeeeeeecCCCCCCCeeeEEEEEEee-CCCCCeEEEEEEEccCCCCCCc
Q 001764 557 FCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAM-DEPPSMLDVEVYDFDGPFNEAT 615 (1016)
Q Consensus 557 ~sDPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~~~-~~~~~~L~i~V~D~d~~~~~dd 615 (1016)
..+|++...++.+.++|++...+.+|+|||. +++.. ......|...|.+++. .+-+|
T Consensus 304 ~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~Fqsn~~l~~kiv~~~~-~~lnd 361 (975)
T KOG2419|consen 304 KDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSDFQSNRYLGNKIVGYCE-LDLND 361 (975)
T ss_pred CCCchheeecchhhhhhhhhccccccccccc-ccccccchhhHHHhhhcccccc-ccccc
Confidence 4679999999999999999999999999997 55442 1223445555666655 44444
No 316
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=31.21 E-value=2.9e+02 Score=26.12 Aligned_cols=41 Identities=12% Similarity=0.248 Sum_probs=30.6
Q ss_pred eccccceeeeeccEEEEeeccCCceEEEEEecccceEEEEcC
Q 001764 715 KMLLQGRLFLSARIIGFHANLFGHKTNFFFLWEDIEDIQVLP 756 (1016)
Q Consensus 715 ~~~~~Grlyis~~~~cF~s~~~g~~t~~~i~~~dI~~i~k~~ 756 (1016)
.+.-+|++.+..+-+-||.+-- .+-=+-|||++|..|...-
T Consensus 20 g~~~yGkimiGDkaFEFyn~~n-~~dyIQIPW~eI~~V~a~V 60 (118)
T PF06115_consen 20 GLGKYGKIMIGDKAFEFYNDRN-VEDYIQIPWEEIDYVIASV 60 (118)
T ss_pred cccccCeEEEcccceEeecCCC-hhhcEEeChhheeEEEEEE
Confidence 4556799999999999986531 1233679999999887554
No 317
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=30.89 E-value=5e+02 Score=25.70 Aligned_cols=137 Identities=12% Similarity=0.068 Sum_probs=72.9
Q ss_pred ccccCChhheeeecCCC-hhHHHHH-HHcCcceeeecccccCCCCceEEEEEEEEeeccCCCccccCceEEEEeccCCCc
Q 001764 857 SVLPVPMSFFMELFGGG-ELERAVM-EKAGCVSYSCSSWESEKLDVYERQIYYRFDKCISRYRGEVTSTQQKSPLPNGNG 934 (1016)
Q Consensus 857 ~~~p~~~~~~f~lF~~~-~~~~~~~-~~~g~~~~~~~~W~~~~~~~~~R~~sy~~~~~~~~~~~~v~~~q~~~~~~~~~~ 934 (1016)
..++++++.+|..|... .+..+++ +.-...++-.++|. .++..|.++|. + ++.....-++....|...
T Consensus 10 ~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg---~gGSIk~~~f~------~-~~~~~~~Kekve~~D~~~ 79 (151)
T PF00407_consen 10 VEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGG---PGGSIKKWTFG------P-GGPFKYVKEKVEAIDEEN 79 (151)
T ss_dssp EEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSS---TTT-EEEEEEE------T-TSSEEEEEEEEEEEETTT
T ss_pred EEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCC---CCCeEEEEEec------C-CCCcceeEEEEEeecCCC
Confidence 35689999999987762 2334433 22244566678884 44799999999 2 223222234444445554
Q ss_pred EEEEEEEEeCCCCCCCceEEEEEEEEEeCCCCCCccEEEEEEEEEEeeccchhhhhhhh-hHHhHHHHHHHHHHHHHhhh
Q 001764 935 WLVEEVMTLHGVPLGDYFNLHLRYQVEDSPSRPKGCLAQVYLGVAWLKSTRHQKRITKN-IVSNLEDRLRVKLSVIEKEF 1013 (1016)
Q Consensus 935 ~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~~~c~l~V~~~V~w~Kst~~K~~Ie~~-~~~~~~~~~~~~~~~~~~ev 1013 (1016)
..+.-++.=-| +.+++..-.....+.+.+. ++|.+ .+.++|-+.. +.. .-+...+.+..|+..++..+
T Consensus 80 ~~~~y~viEGd-~l~~~~~~~~~~~~~~~~~--g~~v~--k~t~~Ye~~~------~~~~~p~~~~~~~~~~~K~ieayL 148 (151)
T PF00407_consen 80 KTITYTVIEGD-VLGDYKSFKSTIQKIPKGD--GGCVV--KWTIEYEKKG------EDVPPPEKYLDFAVGMFKAIEAYL 148 (151)
T ss_dssp TEEEEEEEEET-TGTTTEEEEEEEEEEEETT--SCEEE--EEEEEEEESS------TSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEEecc-ccccEEEEEEEEEecCCCC--CceEE--EEEEEEEecC------CCCCCcHHHHHHHHHHHHHHHHHH
Confidence 55544444444 3455555555555555443 55654 4455565522 111 23333444566666666655
Q ss_pred c
Q 001764 1014 A 1014 (1016)
Q Consensus 1014 ~ 1014 (1016)
+
T Consensus 149 l 149 (151)
T PF00407_consen 149 L 149 (151)
T ss_dssp H
T ss_pred h
Confidence 4
No 318
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=30.78 E-value=18 Score=43.96 Aligned_cols=94 Identities=15% Similarity=0.103 Sum_probs=60.5
Q ss_pred CCCcEEEEEECCeE-EEeeeccCCCCCeeccEEEEEEeCCCCEEEEEEEecCCCCCCceeEEEEeecccccccCCCCCcc
Q 001764 21 YSDPYVRLQLGRQR-FKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPT 99 (1016)
Q Consensus 21 ~~dPyv~v~~~~~k-~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~v~V~D~d~~~~d~~lG~~~v~l~~l~~~~~~~~~~ 99 (1016)
.-+||+.|.+.-.. ..+.+.+.+..|.|+++|...+ .....+.|.|+.......+.+...+.+-..++... .....
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v-~~~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~--~~~~~ 103 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEV-VAGGAKNIIVLLKSPDPKALSEAQLSLQEESQKLL--ALEQR 103 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeee-ecCCceEEEEEecCCcchhhHHHhHHHHHHHHHHH--hhhhh
Confidence 46899999886433 3444566789999999999996 34557888898876544454444444444444321 11245
Q ss_pred EEEEccCCCCCCCCCcceEEEEEEEEE
Q 001764 100 AWHSLQPKNKKSKNKDCGEILLTISFS 126 (1016)
Q Consensus 100 ~w~~L~~~~~~~~~~~~G~I~l~l~~~ 126 (1016)
.|..+.+ .|++.+.+.+.
T Consensus 104 ~w~~~~~---------~g~~~~~~~~~ 121 (694)
T KOG0694|consen 104 LWVLIEE---------LGTLLKPAALT 121 (694)
T ss_pred hcccccc---------ccceeeeeccc
Confidence 6877653 47777776664
No 319
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=30.40 E-value=1.4e+02 Score=30.56 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=30.6
Q ss_pred EEEeeeccCCCCCeeccEEEEEEeC---CCCEEEEEEEecC
Q 001764 34 RFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDED 71 (1016)
Q Consensus 34 k~kTkvi~~t~nP~WnE~f~f~v~~---~~~~L~v~V~D~d 71 (1016)
...|.|...+.+|.|+|++.+.++. .+..|.|++++-.
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs 95 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHIS 95 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEee
Confidence 4778888889999999999999843 3467889998844
No 320
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=29.25 E-value=1.7e+02 Score=30.21 Aligned_cols=38 Identities=13% Similarity=0.268 Sum_probs=30.8
Q ss_pred EEEeeeccCCCCCeeccEEEEEEeC---CCCEEEEEEEecC
Q 001764 34 RFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDED 71 (1016)
Q Consensus 34 k~kTkvi~~t~nP~WnE~f~f~v~~---~~~~L~v~V~D~d 71 (1016)
...|.|...+.+|.|+|++.+.++. .+.-|.|++++-.
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 4778888889999999999999842 3567889998854
No 321
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=28.61 E-value=1.8e+02 Score=25.33 Aligned_cols=40 Identities=20% Similarity=0.333 Sum_probs=29.1
Q ss_pred eCCCCCeEEEEEEEccCCCCCCceeeEEEEEceecCCCCceeEEEECCcC
Q 001764 593 MDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGK 642 (1016)
Q Consensus 593 ~~~~~~~L~i~V~D~d~~~~~dd~lG~~~i~l~~~~~~~~~~~w~~L~~~ 642 (1016)
...+.....|++||.|. +..||+|+.+..+ .+..|.|.+.
T Consensus 7 ~~~P~~~~~V~L~e~d~-~~~Ddll~~~~Td---------~~G~F~l~G~ 46 (80)
T PF01060_consen 7 GGKPAKNVKVKLWEDDY-FDPDDLLDETKTD---------SDGNFELSGS 46 (80)
T ss_pred CCccCCCCEEEEEECCC-CCCCceeEEEEEC---------CCceEEEEEE
Confidence 34445567899999998 8899999987662 2456777654
No 322
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=28.42 E-value=2.9e+02 Score=31.20 Aligned_cols=84 Identities=17% Similarity=0.225 Sum_probs=53.8
Q ss_pred cceeeeeccEEEEeeccCCceEEEEEecccceEEEEcCCcccCCCCCeEEEEEeecCCCCCCCCceeeccCCceEEEecc
Q 001764 719 QGRLFLSARIIGFHANLFGHKTNFFFLWEDIEDIQVLPPSLSSMGSPVIVMTLRQGRGMDARHGAKTQDEEGRLKFHFHS 798 (1016)
Q Consensus 719 ~Grlyis~~~~cF~s~~~g~~t~~~i~~~dI~~i~k~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~f~s 798 (1016)
.|+|++|.-.+.|||.--- ...+.|-|.-|..|+........-| ....+.+-. + ....+..|+|+.
T Consensus 42 ~G~l~vTNLR~iW~s~~~~-r~NlSIG~~~i~~i~~~~~~sklrg-~teaL~i~~----------k--~~~~rfEFiFt~ 107 (339)
T PF07289_consen 42 RGRLVVTNLRLIWHSLKRP-RINLSIGYNCITNISTKTVNSKLRG-NTEALYILA----------K--FNNTRFEFIFTN 107 (339)
T ss_pred eeEEEEEeeeeEEeccCCC-ceeEEeeceeEEEEEEEEeeccccC-ceeEEEEee----------e--cCCceEEEEecc
Confidence 4999999999999997533 4778888988988875543222233 222222111 1 123556789997
Q ss_pred CcCHH---HHHHHHHHHHHhc
Q 001764 799 FVSYN---VAHRTIMALWKAR 816 (1016)
Q Consensus 799 f~~rd---~~~~~i~~~w~~~ 816 (1016)
..... ..|..+..+|++.
T Consensus 108 ~~~~~~~~~lf~~v~~v~raY 128 (339)
T PF07289_consen 108 LSPNSPRQRLFTSVQAVYRAY 128 (339)
T ss_pred CCCCCccchHHHHHHHHHHHH
Confidence 54322 4689999999863
No 323
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=28.33 E-value=5.2e+02 Score=25.85 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=34.8
Q ss_pred CCcEEEEEEEEeCCCCCC-CceEEEEE---EEEEeCCCCCCccEEEEEEEEEEeec
Q 001764 932 GNGWLVEEVMTLHGVPLG-DYFNLHLR---YQVEDSPSRPKGCLAQVYLGVAWLKS 983 (1016)
Q Consensus 932 ~~~~vv~~~~~~~dVPyg-d~F~v~~r---~~i~~~~~~~~~c~l~V~~~V~w~Ks 983 (1016)
+..+++..+...+.+|-. ++-+.+.. |.|++.+. ++|++.....++..++
T Consensus 114 ~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~--~~~~vt~~~~~D~~g~ 167 (193)
T cd00177 114 GTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDP--GKTKVTYVLQVDPKGS 167 (193)
T ss_pred CeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCC--CCEEEEEEEeeCCCCC
Confidence 344555555555446655 66666654 89999844 8999999999999775
No 324
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=26.63 E-value=5.7e+02 Score=24.39 Aligned_cols=89 Identities=12% Similarity=0.207 Sum_probs=53.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEE-eeeccCCCCCeeccEEEEEEe---CCCCEEEEEEEecCC-CCCC
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFK-TKVVRKSLSPSWEEEFSFKVE---DLKDELVISVLDEDK-YFND 76 (1016)
Q Consensus 2 ~L~V~V~~Ar~L~~~d~~g~~dPyv~v~~~~~k~k-Tkvi~~t~nP~WnE~f~f~v~---~~~~~L~v~V~D~d~-~~~d 76 (1016)
.|.++=+.-.++|..+..+.|.||+.|.-++.... +........-.=...+.+.+. .....+.|.+|+... ...+
T Consensus 5 ~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~~~ 84 (134)
T PF10409_consen 5 PLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYEDPKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSMSK 84 (134)
T ss_dssp EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCCCCCEEETTCEEEEEEEEEEEESEEEEEEEECETTECCC
T ss_pred eEEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEeccceeccccccceeEEEEeCCCCeEeCCEEEEEEeCCCccccc
Confidence 35556566678887777778999999998877653 222211111111233444442 235788899999772 3456
Q ss_pred ceeEEEEeeccccc
Q 001764 77 DFVGFLKIPVSRVF 90 (1016)
Q Consensus 77 ~~lG~~~v~l~~l~ 90 (1016)
+.+.++.+--.-+.
T Consensus 85 ~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 85 EKMFRFWFNTGFIE 98 (134)
T ss_dssp EEEEEEEEEGGGSB
T ss_pred CeEEEEEEeeeeee
Confidence 67877777665553
No 325
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=26.56 E-value=4.4e+02 Score=30.53 Aligned_cols=106 Identities=20% Similarity=0.280 Sum_probs=64.2
Q ss_pred CCcEEEEEECCeEEEeeeccC--C--CCC-e-eccEEEEEEe--------CC------CCEEEEEEEecCC-----C-CC
Q 001764 22 SDPYVRLQLGRQRFKTKVVRK--S--LSP-S-WEEEFSFKVE--------DL------KDELVISVLDEDK-----Y-FN 75 (1016)
Q Consensus 22 ~dPyv~v~~~~~k~kTkvi~~--t--~nP-~-WnE~f~f~v~--------~~------~~~L~v~V~D~d~-----~-~~ 75 (1016)
+..||+|.+.+--.+|..+.- . .+| . -+-.-.|+++ .. ...|+|.||.-.. + .+
T Consensus 36 spCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~~ 115 (460)
T PF06219_consen 36 SPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGNS 115 (460)
T ss_pred CCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCccccccc
Confidence 567999999876555554432 1 111 1 1222345542 11 2579999998442 2 45
Q ss_pred CceeEEEEeecccccccCCCC--CccEEEEccCCCCCCCCCcceEEEEEEEEEec
Q 001764 76 DDFVGFLKIPVSRVFDADNKS--LPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (1016)
Q Consensus 76 d~~lG~~~v~l~~l~~~~~~~--~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~~ 128 (1016)
..+||.++|+|. +...+... ....|..+-............+|+|.+...+.
T Consensus 116 ~klLG~v~vpld-l~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~EpD 169 (460)
T PF06219_consen 116 GKLLGKVRVPLD-LKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEPD 169 (460)
T ss_pred ceEEEEEEEEec-cccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccCC
Confidence 679999999987 33222222 24679999876543333457899999987654
No 326
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain. Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.
Probab=26.51 E-value=70 Score=29.75 Aligned_cols=54 Identities=15% Similarity=0.123 Sum_probs=37.2
Q ss_pred ccccceeceeeeec-cccceeeeeccEEEEeecc----CC-c---------eEEEEEecccceEEEEcC
Q 001764 703 FLINDFTCHLKRKM-LLQGRLFLSARIIGFHANL----FG-H---------KTNFFFLWEDIEDIQVLP 756 (1016)
Q Consensus 703 ~l~~~~~c~~~~~~-~~~Grlyis~~~~cF~s~~----~g-~---------~t~~~i~~~dI~~i~k~~ 756 (1016)
+++-+..|.+-.-+ -..|++-||..+++|..+- +. . .-...+++.+|.+|.+..
T Consensus 2 ~ivls~~~~mVtPl~vvpG~l~ITt~~lyF~~d~~~~~~~~~~~~vl~~~~~~~~~w~ls~Ir~v~~RR 70 (108)
T cd01201 2 PVLLSTPASLIAPGVVVKGTLSITTTEIFFEVDERDSQFKKIDDEVLSYCEELHGKWPFSEIRAIFSRR 70 (108)
T ss_pred CeEEEeeeeEEEEEEEeccEEEEecCEEEEEECCccccccccCccceeccccccceeeHHHHHHHHHHh
Confidence 44556677776632 3469999999999999631 21 1 113478999999888776
No 327
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=26.40 E-value=7.5e+02 Score=25.74 Aligned_cols=143 Identities=7% Similarity=0.030 Sum_probs=76.1
Q ss_pred ccc-cCChhheeeecCCChhHHHHHHHcCcceeeecccccCCCCceEEEEEEEEeeccCCCccccCce----EEEEeccC
Q 001764 857 SVL-PVPMSFFMELFGGGELERAVMEKAGCVSYSCSSWESEKLDVYERQIYYRFDKCISRYRGEVTST----QQKSPLPN 931 (1016)
Q Consensus 857 ~~~-p~~~~~~f~lF~~~~~~~~~~~~~g~~~~~~~~W~~~~~~~~~R~~sy~~~~~~~~~~~~v~~~----q~~~~~~~ 931 (1016)
.+| .++++.|++++.|..+..++....-...+- +..+. ...+.+.|...- |. .++.. +.+.....
T Consensus 56 ~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~l----e~~~~-~~~~i~y~~~~~---P~--P~s~RD~V~~r~~~~~~ 125 (209)
T cd08870 56 GVFEDCTPELLRDFYWDDEYRKKWDETVIEHETL----EEDEK-SGTEIVRWVKKF---PF--PLSDREYVIARRLWESD 125 (209)
T ss_pred EEEcCCCHHHHHHHHcChhhHhhhhhheeeEEEE----EecCC-CCcEEEEEEEEC---CC--cCCCceEEEEEEEEEcC
Confidence 456 579999999887776665555543211111 11111 013434444222 33 22222 12222222
Q ss_pred CCcEE-EEEEEEeCCCCCCCceEE---EEEEEEEeCCCCCCccEEEEEEEEEEeeccchhhhhhhhhHHhHHHHHHHHHH
Q 001764 932 GNGWL-VEEVMTLHGVPLGDYFNL---HLRYQVEDSPSRPKGCLAQVYLGVAWLKSTRHQKRITKNIVSNLEDRLRVKLS 1007 (1016)
Q Consensus 932 ~~~~v-v~~~~~~~dVPygd~F~v---~~r~~i~~~~~~~~~c~l~V~~~V~w~Kst~~K~~Ie~~~~~~~~~~~~~~~~ 1007 (1016)
++.++ +...+.-+.+|-.++-+| ..+|.|++...++++|++.+.+..+- +..+=+.++...+..+.-..++.|-.
T Consensus 126 ~~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp-~G~IP~wlvN~~~~~~~~~~l~~l~~ 204 (209)
T cd08870 126 DRSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNP-DGGIPRELAKLAVKRGMPGFLKKLEN 204 (209)
T ss_pred CCEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECC-CCCCCHHHHHHHHHhhhHHHHHHHHH
Confidence 34444 444555568887655554 47899998732347888888888875 43344555566666666666666555
Q ss_pred HHH
Q 001764 1008 VIE 1010 (1016)
Q Consensus 1008 ~~~ 1010 (1016)
.+.
T Consensus 205 a~~ 207 (209)
T cd08870 205 ALR 207 (209)
T ss_pred HHh
Confidence 443
No 328
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=26.35 E-value=6.4e+02 Score=25.37 Aligned_cols=78 Identities=19% Similarity=0.279 Sum_probs=53.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE----------CCe-EEEeeeccCC-----CCCeeccEEEEEEe--CC--CCE
Q 001764 3 LVVRVIEARNIPAMDQNGYSDPYVRLQL----------GRQ-RFKTKVVRKS-----LSPSWEEEFSFKVE--DL--KDE 62 (1016)
Q Consensus 3 L~V~V~~Ar~L~~~d~~g~~dPyv~v~~----------~~~-k~kTkvi~~t-----~nP~WnE~f~f~v~--~~--~~~ 62 (1016)
+.=.|..|.+.. ..+-||+-.+ +.. ...|.+.... ..-.||.-|.+.+. .. -..
T Consensus 4 v~G~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~ 77 (168)
T PF07162_consen 4 VIGEIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQ 77 (168)
T ss_pred EEEEEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCce
Confidence 445678888654 3466888776 123 4556555432 33579988888772 22 279
Q ss_pred EEEEEEecCCCCCCceeEEEEeec
Q 001764 63 LVISVLDEDKYFNDDFVGFLKIPV 86 (1016)
Q Consensus 63 L~v~V~D~d~~~~d~~lG~~~v~l 86 (1016)
|.++||..|.++++...|-..+.|
T Consensus 78 L~l~V~~~D~~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 78 LVLQVYSLDSWGRDRVEGYGFCHL 101 (168)
T ss_pred EEEEEEEEcccCCeEEeEEeEEEe
Confidence 999999999999999988765544
No 329
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=26.05 E-value=1.9e+02 Score=29.81 Aligned_cols=38 Identities=8% Similarity=0.166 Sum_probs=30.8
Q ss_pred eeeecCCCCCCCeeeEEEEEEeeCC--CCCeEEEEEEEcc
Q 001764 571 RTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDFD 608 (1016)
Q Consensus 571 ~~T~~~~~t~nP~WnE~f~f~~~~~--~~~~L~i~V~D~d 608 (1016)
..|.+..++.+|.|+|++.+.+... ....|.|+.++-.
T Consensus 58 ~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 58 AYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred EEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 7888999999999999999877443 3456889998865
No 330
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=25.97 E-value=1.1e+02 Score=38.52 Aligned_cols=66 Identities=20% Similarity=0.283 Sum_probs=44.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE----CCee----eeeecCCCCCCCeeeEEEEEEee-C--CCCCeEEEEEEEc
Q 001764 539 LTVALIKGDNLAAVDSSGFCDPYVVFTC----NGKS----RTSSIKFQQCDPMWNEIFEYDAM-D--EPPSMLDVEVYDF 607 (1016)
Q Consensus 539 L~V~v~~A~~L~~~d~~g~sDPyv~v~~----~~~~----~~T~~~~~t~nP~WnE~f~f~~~-~--~~~~~L~i~V~D~ 607 (1016)
++|+++.+.++. .....|-+|.|.. |++. +.|+-+....+|.||+..+|++. . +...+|.|.||--
T Consensus 345 frI~l~~is~~n---~~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~v 421 (1076)
T KOG0904|consen 345 FRIKLVGISKVN---LPETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYAV 421 (1076)
T ss_pred eEEEEeeccccC---CCcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeeeEe
Confidence 888888877653 2335567777664 4444 45666666889999999999883 2 2345677777753
No 331
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=23.55 E-value=8.5e+02 Score=25.38 Aligned_cols=128 Identities=10% Similarity=0.028 Sum_probs=65.3
Q ss_pred ecccccCChhheeeecCCChhHHHHHHHcCcceeeecccccCCCCceEEEEEEE-EeeccCCCcc--ccCceEEEEeccC
Q 001764 855 YSSVLPVPMSFFMELFGGGELERAVMEKAGCVSYSCSSWESEKLDVYERQIYYR-FDKCISRYRG--EVTSTQQKSPLPN 931 (1016)
Q Consensus 855 ~~~~~p~~~~~~f~lF~~~~~~~~~~~~~g~~~~~~~~W~~~~~~~~~R~~sy~-~~~~~~~~~~--~v~~~q~~~~~~~ 931 (1016)
...+++++++.+..++.+..+...+...+.... .+.. .+.. ..+.|. +..+. |++. .|...+....+.+
T Consensus 50 ~e~~i~~~~~~~~~vl~d~~~~~~W~p~~~~~~-~l~~-----~~~~-~~v~y~~~~~Pw-Pv~~RD~v~~~~~~~~~~~ 121 (215)
T cd08877 50 MEGEIDGPLFNLLALLNEVELYKTWVPFCIRSK-KVKQ-----LGRA-DKVCYLRVDLPW-PLSNREAVFRGFGVDRLEE 121 (215)
T ss_pred EEEEecCChhHeEEEEehhhhHhhhcccceeeE-EEee-----cCCc-eEEEEEEEeCce-EecceEEEEEEEEEeeecc
Confidence 345788999999988877765555444321111 1111 1111 234444 22211 2221 1111111112223
Q ss_pred CCcEEEEEEEEeC--C--------CCCCC-c----eEEEEEEEEEeCCCCCCccEEEEEEEEEEeec---cchhhhhhh
Q 001764 932 GNGWLVEEVMTLH--G--------VPLGD-Y----FNLHLRYQVEDSPSRPKGCLAQVYLGVAWLKS---TRHQKRITK 992 (1016)
Q Consensus 932 ~~~~vv~~~~~~~--d--------VPygd-~----F~v~~r~~i~~~~~~~~~c~l~V~~~V~w~Ks---t~~K~~Ie~ 992 (1016)
.+.++|......+ + +|-.. - -.....|.|++.+. ++|++...+.++-.++ .|+=+.+.+
T Consensus 122 ~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~--~~t~v~~~~~~DP~g~~IP~~liN~~~k 198 (215)
T cd08877 122 NGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISP--TKCYLRFVANVDPKMSLVPKSLLNFVAR 198 (215)
T ss_pred CCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCC--CCeEEEEEEEcCCCcccCCHHHHHHHHH
Confidence 4455554333221 1 55554 2 33567889999865 8999999999998766 444444433
No 332
>PF12068 DUF3548: Domain of unknown function (DUF3548); InterPro: IPR021935 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes and is typically between 184 to 216 amino acids in length. The domain is found associated with PF00566 from PFAM and at the N terminus of GYP7 proteins.
Probab=20.17 E-value=1.2e+02 Score=32.14 Aligned_cols=36 Identities=31% Similarity=0.466 Sum_probs=29.4
Q ss_pred eEEEEEecccceEEEEcCCcccCCCCCeEEEEEeecCCC
Q 001764 739 KTNFFFLWEDIEDIQVLPPSLSSMGSPVIVMTLRQGRGM 777 (1016)
Q Consensus 739 ~t~~~i~~~dI~~i~k~~~~~~~~~~~~~~i~l~~~~~~ 777 (1016)
.-.|.||+.||..|++.++.+ |.+.++++++.|..+
T Consensus 111 ~~aFsv~lsdl~Si~~~~p~~---G~~~lv~~~kdG~~~ 146 (213)
T PF12068_consen 111 SYAFSVPLSDLKSIRVSKPSL---GWWYLVFILKDGTSL 146 (213)
T ss_pred ceEEEEEhhheeeEEecCCCC---CceEEEEEecCCCcc
Confidence 347899999999999998755 888999998866554
No 333
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=20.07 E-value=1.3e+02 Score=35.13 Aligned_cols=42 Identities=12% Similarity=0.252 Sum_probs=30.5
Q ss_pred eeeEEEEEcee-cCCCCceeEEEECCcCCc-CcccceEEEEEEEe
Q 001764 616 SLGHAEINFVK-SDISDLADVWIPLQGKLA-QACQSKLHLRIFLN 658 (1016)
Q Consensus 616 ~lG~~~i~l~~-~~~~~~~~~w~~L~~~~~-~~~~g~l~l~~~~~ 658 (1016)
.+|.+.|++.. +..+...+.|+++.+... ....|.+ |++.+.
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~~~~~l-lk~~~~ 44 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKSVGEGLI-IKVSSE 44 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCCcCcceE-EEEEee
Confidence 48999999999 666667899999986433 3345666 676664
Done!