Query 001764
Match_columns 1016
No_of_seqs 656 out of 3527
Neff 8.1
Searched_HMMs 29240
Date Tue Mar 26 16:58:57 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001764.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1060-1064//hhsearch_pdb/001764hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r83_A Synaptotagmin-1; C2A-C2 1.0 1 1 230.2 30.2 103 2-107 20-128 (284)
2 1dqv_A Synaptotagmin III; beta 1.0 1 1 228.5 17.6 103 2-106 21-130 (296)
3 2fk9_A Protein kinase C, ETA t 1.0 1 1 160.7 13.8 115 535-658 27-156 (157)
4 2dmh_A Myoferlin; beta-sandwic 1.0 1 1 155.3 16.8 123 535-659 5-133 (140)
5 3jzy_A Intersectin 2; C2 domai 1.0 1 1 153.6 14.8 120 535-659 385-508 (510)
6 3m7f_B E3 ubiquitin-protein li 1.0 1 1 152.9 16.4 125 2-128 9-142 (176)
7 3kwu_A MUNC13-1; calcium bindi 1.0 1 1 152.8 18.9 121 535-659 15-147 (148)
8 3b7y_A E3 ubiquitin-protein li 1.0 1 1 152.6 16.4 122 535-658 18-152 (153)
9 1wfj_A Putative elicitor-respo 1.0 1 1 152.3 13.4 123 535-661 8-132 (136)
10 1gmi_A Protein kinase C, epsil 1.0 1 1 152.3 13.8 117 536-661 5-135 (136)
No 1
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=1.00 E-value=1 Score=230.25 Aligned_cols=103 Identities=39% Similarity=0.690 Sum_probs=90.1
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCEEEEEECC---EEEEEEECCCCCCCEECCEEEEEEEC---CCCEEEEEEEECCCCCC
Q ss_conf 9999999854699999999887299999999---58885300399997121299999708---99989999996589999
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR---QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKYFN 75 (1016)
Q Consensus 2 ~L~V~V~~A~~L~~~d~~g~~DPyv~i~~~~---~k~kTkvv~~t~nP~WnE~f~f~i~~---~~~~L~i~V~d~d~~~~ 75 (1016)
+|.|+|++|++|++++.+|.+||||++.++. .+++|+++++++||+|||+|.|.+.. ....|.|.|||++.+++
T Consensus 20 ~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~~~~ 99 (284)
T 2r83_A 20 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSK 99 (284)
T ss_dssp EEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCSSSC
T ss_pred EEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCEEECCCCCCCCCCEECCEEEEEECHHHHCCCEEEEEEEECCCCCC
T ss_conf 99999998409998778999796799999819985476885159999825736999846688375789999998898877
Q ss_pred CCEEEEEEEECCCCCCCCCCCCCCEEEECCCC
Q ss_conf 93348788206401256889986489985579
Q 001764 76 DDFVGFLKIPVSRVFDADNKSLPTAWHSLQPK 107 (1016)
Q Consensus 76 d~~lG~~~i~L~~l~~~~~~~~~~~w~~L~~~ 107 (1016)
+++||++.++|.++... .....|++|.+.
T Consensus 100 ~~~lG~~~i~l~~l~~~---~~~~~w~~L~~~ 128 (284)
T 2r83_A 100 HDIIGEFKVPMNTVDFG---HVTEEWRDLQSA 128 (284)
T ss_dssp CCEEEEEEEEGGGCCCS---SCEEEEEECBCC
T ss_pred CCEEEEEEECCHHCCCC---CCCEEEEEEECC
T ss_conf 74658999735013567---763038983033
No 2
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=1.00 E-value=1 Score=228.47 Aligned_cols=103 Identities=35% Similarity=0.660 Sum_probs=84.8
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCEEEEEE---CCEEEEEEECCCCCCCEECCEEEEEEECC---CCEEEEEEEECCCCCC
Q ss_conf 99999998546999999998872999999---99588853003999971212999997089---9989999996589999
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL---GRQRFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDEDKYFN 75 (1016)
Q Consensus 2 ~L~V~V~~A~~L~~~d~~g~~DPyv~i~~---~~~k~kTkvv~~t~nP~WnE~f~f~i~~~---~~~L~i~V~d~d~~~~ 75 (1016)
+|.|+|++|++|++++.+|.+||||++.+ +.++++|+++++++||+|||+|.|.+... ...|.|.|||++.+++
T Consensus 21 ~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~ 100 (296)
T 1dqv_A 21 QLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSR 100 (296)
T ss_dssp EEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSSSC
T ss_pred EEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCEEEECCCCCCCCCCCEEEEEEEEECHHHHCCCEEEEEEEECCCCCC
T ss_conf 89999999579998678998083999999858971476872479999738207999936899267889999997589887
Q ss_pred CCEEEEEEEE-CCCCCCCCCCCCCCEEEECCC
Q ss_conf 9334878820-640125688998648998557
Q 001764 76 DDFVGFLKIP-VSRVFDADNKSLPTAWHSLQP 106 (1016)
Q Consensus 76 d~~lG~~~i~-L~~l~~~~~~~~~~~w~~L~~ 106 (1016)
+++||++.++ +..+... ......|+.|.+
T Consensus 101 ~~~iG~~~i~~l~~~~~~--~~~~~~w~~L~~ 130 (296)
T 1dqv_A 101 HDLIGQVVLDNLLELAEQ--PPDRPLWRDILE 130 (296)
T ss_dssp CCEEEEEECCCTTGGGSS--CSSCCCCEECBC
T ss_pred CCEEEEEEECCCCCCCCC--CCCCEEEECCCC
T ss_conf 746799992531021337--765046620234
No 3
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=160.72 Aligned_cols=115 Identities=19% Similarity=0.270 Sum_probs=101.0
Q ss_pred CCEEEEEEEEEEECCCCCCC----------CCCCCCEEEEEECCEE-EEEECCCCCCCCEEEEEEEEEEECCCCCEEEEE
Q ss_conf 88499999997563999998----------8888729999998935-455458899998361799999217999769999
Q 001764 535 DGWLLTVALIKGDNLAAVDS----------SGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVE 603 (1016)
Q Consensus 535 ~~~~L~V~v~~a~~L~~~d~----------~g~~DPYv~i~~~~~~-~~T~v~~~t~nP~WnE~f~f~v~~~~~~~L~i~ 603 (1016)
..+.|+|+|++|+||+++|. .|.+||||++.+++++ .+|+++++|+||.|||+|.|.+.. ...|.|+
T Consensus 27 ~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~--~~~L~~~ 104 (157)
T 2fk9_A 27 FNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD--GGHLELA 104 (157)
T ss_dssp EEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE--ECEEEEE
T ss_pred CCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEEECCCCCCCCCCCEEEEECCC--CCEEEEE
T ss_conf 76089999999889987555543220236788878299999999966786522799998337589999189--9999999
Q ss_pred EEECCCCCCCCCEEEEEEEECEECCCC----CCEEEEEECCCCCCCCCCCEEEEEEEEE
Q ss_conf 997168999884005899981114799----9332899777677674463079999996
Q 001764 604 VYDFDGPFNEATSLGHAEINFVKSDIS----DLADVWIPLQGKLAQACQSKLHLRIFLN 658 (1016)
Q Consensus 604 V~D~d~~~~~dd~iG~~~i~l~~i~~~----~~~~~w~~L~~~~~~~~~g~l~l~~~~~ 658 (1016)
|||+|. +++||+||++.|++.++..+ ...+.|++|.. +|+|+|++++.
T Consensus 105 V~D~d~-~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~------~G~i~l~l~~~ 156 (157)
T 2fk9_A 105 VFHETP-LGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP------EGKVFVVITLT 156 (157)
T ss_dssp EEECCS-SSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS------SCEEEEEEEEC
T ss_pred EEECCC-CCCCCEEEEEEEEHHHHHCCCCCCCCCCEEEECCC------CCEEEEEEEEE
T ss_conf 998998-88898998999998993224577876337998999------93999999997
No 4
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=155.27 Aligned_cols=123 Identities=20% Similarity=0.272 Sum_probs=103.9
Q ss_pred CCEEEEEEEEEEECCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCEEEEEEEEEEECC---CCCEEEEEEEECCCCC
Q ss_conf 8849999999756399999888887299999989354554588999983617999992179---9976999999716899
Q 001764 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDE---PPSMLDVEVYDFDGPF 611 (1016)
Q Consensus 535 ~~~~L~V~v~~a~~L~~~d~~g~~DPYv~i~~~~~~~~T~v~~~t~nP~WnE~f~f~v~~~---~~~~L~i~V~D~d~~~ 611 (1016)
..+.|.|+|++|+||+.+|. |.+||||++.+++++++|+++++++||+|||+|.|.+... ....|.|+|||+|. +
T Consensus 5 ~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~-~ 82 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFET-I 82 (140)
T ss_dssp BCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTC-S
T ss_pred CCCEEEEEEEEEECCCCCCC-CCCCEEEEEEECCEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEECCC-C
T ss_conf 88489999998058998899-989949999999876783404699899617579998316565778889999997987-7
Q ss_pred CCCCEEEEEEEECEECCCCCCEEEEEE---CCCCCCCCCCCEEEEEEEEEE
Q ss_conf 988400589998111479993328997---776776744630799999960
Q 001764 612 NEATSLGHAEINFVKSDISDLADVWIP---LQGKLAQACQSKLHLRIFLNN 659 (1016)
Q Consensus 612 ~~dd~iG~~~i~l~~i~~~~~~~~w~~---L~~~~~~~~~g~l~l~~~~~~ 659 (1016)
++|++||++.+++.++..+...+.|++ |....+....|+|+|++.|.-
T Consensus 83 ~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p 133 (140)
T 2dmh_A 83 GQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDP 133 (140)
T ss_dssp SSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECC
T ss_pred CCCCEEEEEEEEHHHHCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEC
T ss_conf 799568999999899444798316885166337889887878999999978
No 5
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=1.00 E-value=1 Score=153.61 Aligned_cols=120 Identities=22% Similarity=0.257 Sum_probs=105.7
Q ss_pred CCEEEEEEEEEEECCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCCCCC
Q ss_conf 88499999997563999998888872999999893545545889999836179999921799976999999716899988
Q 001764 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEA 614 (1016)
Q Consensus 535 ~~~~L~V~v~~a~~L~~~d~~g~~DPYv~i~~~~~~~~T~v~~~t~nP~WnE~f~f~v~~~~~~~L~i~V~D~d~~~~~d 614 (1016)
..+.|.|+|++|++|+.+|..|.+||||++.++++.++|+++++++||.|||+|.|.+.......|.|+|||+|. +++|
T Consensus 385 ~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~-~~~~ 463 (510)
T 3jzy_A 385 GIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQ-FSPD 463 (510)
T ss_dssp -CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCS-SSSC
T ss_pred CCCEEEEEECEEECCCCCCCCCCCCEEEEEEECCEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEECCC-CCCC
T ss_conf 776699994545369999999997807999999960318856899899327438998348989979999983898-8888
Q ss_pred CEEEEEEEECEECCCCCC----EEEEEECCCCCCCCCCCEEEEEEEEEE
Q ss_conf 400589998111479993----328997776776744630799999960
Q 001764 615 TSLGHAEINFVKSDISDL----ADVWIPLQGKLAQACQSKLHLRIFLNN 659 (1016)
Q Consensus 615 d~iG~~~i~l~~i~~~~~----~~~w~~L~~~~~~~~~g~l~l~~~~~~ 659 (1016)
|+||++.+++.++..+.. ...|++|.+. ..|+|++++.+..
T Consensus 464 d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~----~~G~i~l~~~l~l 508 (510)
T 3jzy_A 464 DFLGRTEIPVAKIRTEQESKGPMTRRLLLHEV----PTGEVWVRFDLQL 508 (510)
T ss_dssp CEEEEEEEEHHHHHHHHHHHCSCCEEEECBSS----SSCEEEEEEEEEE
T ss_pred CCEEEEEEEHHHHCCCCCCCCCEEEEECCCCC----CCCEEEEEEEEEE
T ss_conf 70389999999925556778844566357887----8836999999997
No 6
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}
Probab=1.00 E-value=1 Score=152.90 Aligned_cols=125 Identities=29% Similarity=0.520 Sum_probs=70.8
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCEEEEEECC------EEEEEEECCCCCCCEECCEEEEEEECCCCEEEEEEEECCCCCC
Q ss_conf 9999999854699999999887299999999------5888530039999712129999970899989999996589999
Q 001764 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR------QRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFN 75 (1016)
Q Consensus 2 ~L~V~V~~A~~L~~~d~~g~~DPyv~i~~~~------~k~kTkvv~~t~nP~WnE~f~f~i~~~~~~L~i~V~d~d~~~~ 75 (1016)
.|.|+|++|++|+.++.+|.+||||++.+++ .+++|+++++++||+|||+|.|.+.+....|.|.|||++.+++
T Consensus 9 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~d~d~~~~ 88 (176)
T 3m7f_B 9 VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDENRLTR 88 (176)
T ss_dssp EEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEEECC----
T ss_pred EEEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCEECCEECCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCC
T ss_conf 99999997368987678989581899999887788651165761779999864666999975999979999998988778
Q ss_pred CCEEEEEEEECCCCCCCCCC---CCCCEEEECCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 93348788206401256889---986489985579989999734099999999926
Q 001764 76 DDFVGFLKIPVSRVFDADNK---SLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (1016)
Q Consensus 76 d~~lG~~~i~L~~l~~~~~~---~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~~~~ 128 (1016)
++|||++.++|.++...... .....||+|..+..+ ....|+|+|+++|.+.
T Consensus 89 d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~--~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 89 DDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHK--SRVKGYLRLKMTYLPK 142 (176)
T ss_dssp CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTT--CCCCSEEEEEEEECC-
T ss_pred CCEEEEEEEEHHHCCCCCCCCCCCCCCCEEECCCCCCC--CCCCEEEEEEEEEEEC
T ss_conf 96779999998994556775454443117883356788--9657799999999809
No 7
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*
Probab=1.00 E-value=1 Score=152.80 Aligned_cols=121 Identities=22% Similarity=0.397 Sum_probs=105.9
Q ss_pred CCEEEEEEEEEEECCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCC---
Q ss_conf 88499999997563999998888872999999893545545889999836179999921799976999999716899---
Q 001764 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPF--- 611 (1016)
Q Consensus 535 ~~~~L~V~v~~a~~L~~~d~~g~~DPYv~i~~~~~~~~T~v~~~t~nP~WnE~f~f~v~~~~~~~L~i~V~D~d~~~--- 611 (1016)
..+.|.|+|++|++|+.+|..|.+||||++.++++.++|+++++++||.|||+|.|.+... ...|.++|||+|. +
T Consensus 15 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~d~d~-~~~~ 92 (148)
T 3kwu_A 15 WSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNS-SDRIKVRVLDEDD-DIKS 92 (148)
T ss_dssp CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECST-TCEEEEEEEECCC-SHHH
T ss_pred CCCEEEEEEEEEECCCCCCCCCCCCEEEEEEECCEEEECCCCCCCCCCCCCCEEEEEECCC-CCEEEEEEEECCC-CCCC
T ss_conf 5537999999610998889998918379999999998877557998987246899984499-9989999998998-8443
Q ss_pred --------CCCCEEEEEEEECEECCCCCCEEEEEECCCCCC-CCCCCEEEEEEEEEE
Q ss_conf --------988400589998111479993328997776776-744630799999960
Q 001764 612 --------NEATSLGHAEINFVKSDISDLADVWIPLQGKLA-QACQSKLHLRIFLNN 659 (1016)
Q Consensus 612 --------~~dd~iG~~~i~l~~i~~~~~~~~w~~L~~~~~-~~~~g~l~l~~~~~~ 659 (1016)
+.|++||++.+++.++ ....+.|++|....+ ....|.|+|++.++.
T Consensus 93 ~~~~~~~~~~~~~lG~~~i~l~~l--~~~~~~w~~L~~~~~~~~~~G~i~l~l~~e~ 147 (148)
T 3kwu_A 93 RVKQRFKRESDDFLGQTIIEVRTL--SGEMDVWYNLDKRTDKSAVSGAIRLHISVEI 147 (148)
T ss_dssp HHHTTTSSCSSEEEEEEEEEGGGC--CSEEEEEEECBCSSTTCCCCCEEEEEEEEEC
T ss_pred CCCCCCCCCCCCCEEEEEEEHHHC--CCCCCEEEECCCCCCCCCCCEEEEEEEEEEE
T ss_conf 310123577896579999998997--6889889984068888887668999999996
No 8
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=1.00 E-value=1 Score=152.63 Aligned_cols=122 Identities=21% Similarity=0.271 Sum_probs=100.0
Q ss_pred CCEEEEEEEEEEECCCCCCCCCCCCCEEEEEECC------EEEEEECCCCCCCCEEEEEEEEEEECCCCCEEEEEEEECC
Q ss_conf 8849999999756399999888887299999989------3545545889999836179999921799976999999716
Q 001764 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNG------KSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFD 608 (1016)
Q Consensus 535 ~~~~L~V~v~~a~~L~~~d~~g~~DPYv~i~~~~------~~~~T~v~~~t~nP~WnE~f~f~v~~~~~~~L~i~V~D~d 608 (1016)
..+.|+|+|++|+||+.+|..|.+||||++.+++ ..++|+++++++||.|||+|.|.+... ...|.|+|||+|
T Consensus 18 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~l~~~V~d~d 96 (153)
T 3b7y_A 18 NSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ-QHRLLFEVFDEN 96 (153)
T ss_dssp TCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTT-TCEEEEEEEECC
T ss_pred CCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCCCCCCCEEEEEECCC-CCEEEEEEEECC
T ss_conf 7318999999856898888898978179999977888620004675065999989998899983398-898999999899
Q ss_pred CCCCCCCEEEEEEEECEECCCCCCE------EEEEECCCCC-CCCCCCEEEEEEEEE
Q ss_conf 8999884005899981114799933------2899777677-674463079999996
Q 001764 609 GPFNEATSLGHAEINFVKSDISDLA------DVWIPLQGKL-AQACQSKLHLRIFLN 658 (1016)
Q Consensus 609 ~~~~~dd~iG~~~i~l~~i~~~~~~------~~w~~L~~~~-~~~~~g~l~l~~~~~ 658 (1016)
. +++|++||++.+++.++..+... ..|++|..+. +....|+|+|++.|.
T Consensus 97 ~-~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~ 152 (153)
T 3b7y_A 97 R-LTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYL 152 (153)
T ss_dssp S-SSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEEC
T ss_pred C-CCCCCEEEEEEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEE
T ss_conf 9-9689705999999899244798420024401031344557997435999999995
No 9
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2
Probab=1.00 E-value=1 Score=152.33 Aligned_cols=123 Identities=20% Similarity=0.324 Sum_probs=101.5
Q ss_pred CCEEEEEEEEEEECCCCCCCCCCCCCEEEEEECCEEEEEECCC-CCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCCCC
Q ss_conf 8849999999756399999888887299999989354554588-999983617999992179997699999971689998
Q 001764 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKF-QQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNE 613 (1016)
Q Consensus 535 ~~~~L~V~v~~a~~L~~~d~~g~~DPYv~i~~~~~~~~T~v~~-~t~nP~WnE~f~f~v~~~~~~~L~i~V~D~d~~~~~ 613 (1016)
..+.|+|+|++|++|+.+|..|.+||||++.++++.++|++++ +++||.|||+|.|.+.. ....|.|+|||+|. +++
T Consensus 8 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~-~~~~l~~~V~d~~~-~~~ 85 (136)
T 1wfj_A 8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE-GTTELKAKIFDKDV-GTE 85 (136)
T ss_dssp CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEES-SCCEEEEEECCSSS-CTT
T ss_pred CCEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCEEEEEECC-CCCEEEEEEEECCC-CCC
T ss_conf 9689999999630898756577868269999999612107224999899417679999779-99889999997898-889
Q ss_pred CCEEEEEEEECEEC-CCCCCEEEEEECCCCCCCCCCCEEEEEEEEEECC
Q ss_conf 84005899981114-7999332899777677674463079999996069
Q 001764 614 ATSLGHAEINFVKS-DISDLADVWIPLQGKLAQACQSKLHLRIFLNNTK 661 (1016)
Q Consensus 614 dd~iG~~~i~l~~i-~~~~~~~~w~~L~~~~~~~~~g~l~l~~~~~~~~ 661 (1016)
|++||++.+++.++ ..+...+.|++|. + +....|+|+|++.|.-..
T Consensus 86 d~~lG~~~i~l~~l~~~~~~~~~w~~L~-~-~~~~~G~i~l~l~~~p~~ 132 (136)
T 1wfj_A 86 DDAVGEATIPLEPVFVEGSIPPTAYNVV-K-DEEYKGEIWVALSFKPSG 132 (136)
T ss_dssp TCCSEEEEEESHHHHHHSEEEEEEEEEE-E-TTEEEEEEEEEEEEEECC
T ss_pred CCEEEEEEEEHHHHCCCCCCCCEEEEEE-C-CCCCCEEEEEEEEEEECC
T ss_conf 9638999998798245788886789964-3-985588999999998688
No 10
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=1.00 E-value=1 Score=152.27 Aligned_cols=117 Identities=18% Similarity=0.293 Sum_probs=100.3
Q ss_pred CEEEEEEEEEEECCCCCCCCCC-----------CCCEEEEEECCEE-EEEECCCCCCCCEEEEEEEEEEECCCCCEEEEE
Q ss_conf 8499999997563999998888-----------8729999998935-455458899998361799999217999769999
Q 001764 536 GWLLTVALIKGDNLAAVDSSGF-----------CDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVE 603 (1016)
Q Consensus 536 ~~~L~V~v~~a~~L~~~d~~g~-----------~DPYv~i~~~~~~-~~T~v~~~t~nP~WnE~f~f~v~~~~~~~L~i~ 603 (1016)
.+.|+|+|++|+||+.+|..|+ +||||++.+++.. .+|+++++++||.|||+|+|.+... ..|.|+
T Consensus 5 ~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~--~~L~~~ 82 (136)
T 1gmi_A 5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG--RKIELA 82 (136)
T ss_dssp EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE--CEEEEE
T ss_pred CEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEEECCCCCCCCCCEEEEEECCC--CEEEEE
T ss_conf 408999999686999866365113355467767695899998996700335787996974488899980689--999999
Q ss_pred EEECCCCCCCCCEEEEEEEECEECCCCC--CEEEEEECCCCCCCCCCCEEEEEEEEEECC
Q ss_conf 9971689998840058999811147999--332899777677674463079999996069
Q 001764 604 VYDFDGPFNEATSLGHAEINFVKSDISD--LADVWIPLQGKLAQACQSKLHLRIFLNNTK 661 (1016)
Q Consensus 604 V~D~d~~~~~dd~iG~~~i~l~~i~~~~--~~~~w~~L~~~~~~~~~g~l~l~~~~~~~~ 661 (1016)
|||+|. +++||+||.+.+++.++.... ..+.|++|.. .|+|+|++.+..+.
T Consensus 83 V~d~d~-~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~------~G~i~l~l~~~~~~ 135 (136)
T 1gmi_A 83 VFHDAP-IGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP------EGKVYVIIDLSGSS 135 (136)
T ss_dssp EEECCS-SSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS------SCEEEEEEEEEEEE
T ss_pred EEECCC-CCCCCEEEEEEEEHHHHCCCCCCCCCEEEECCC------CEEEEEEEEEEECC
T ss_conf 996998-888988999999889921057987117898599------80999999999168
Done!