Query 001767
Match_columns 1016
No_of_seqs 798 out of 6017
Neff 8.5
Searched_HMMs 29240
Date Tue Mar 26 16:12:13 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001767.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1065-1069//hhsearch_pdb/001767hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoj_A High affinity nerve gro 1.0 1 1 418.6 22.9 260 658-936 40-318 (329)
2 4asz_A BDNF/NT-3 growth factor 1.0 1 1 418.0 19.3 259 658-935 12-287 (299)
3 4gt4_A Tyrosine-protein kinase 1.0 1 1 413.5 22.0 258 659-935 26-304 (308)
4 4fie_A Serine/threonine-protei 1.0 1 1 408.6 24.2 257 658-946 150-407 (423)
5 4fih_A Serine/threonine-protei 1.0 1 1 408.2 23.5 258 658-947 73-331 (346)
6 4ase_A Vascular endothelial gr 1.0 1 1 406.8 16.7 269 649-935 54-345 (353)
7 4b9d_A Serine/threonine-protei 1.0 1 1 406.7 22.5 250 659-930 24-276 (350)
8 4g3f_A NF-kappa-beta-inducing 1.0 1 1 404.2 19.9 263 658-946 57-329 (336)
9 3omv_A RAF proto-oncogene seri 1.0 1 1 403.1 22.1 259 657-935 34-298 (307)
10 4aw0_A HPDK1, 3-phosphoinositi 1.0 1 1 399.0 16.8 260 659-945 32-296 (311)
No 1
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=418.56 Aligned_cols=260 Identities=28% Similarity=0.460 Sum_probs=218.3
Q ss_pred HCCCCCCCCCCCCCCEEEEEEECC------CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCEEE
Q ss_conf 238432372023797339998907------99599999925777131699999999998439987110022676162569
Q 001767 658 TNNFDAANKIGEGGFGPVYKGTLS------DGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCCIEGNQLL 731 (1016)
Q Consensus 658 ~~~f~~~~~LG~G~fG~Vy~~~~~------~~~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~~~~~~ 731 (1016)
.++|...++||+|+||+||+|++. +++.||||+++.......+.|.+|+.++++++|||||+++|+|.+++.++
T Consensus 40 ~~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~ 119 (329)
T 4aoj_A 40 RRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLL 119 (329)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEE
T ss_pred HHHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEE
T ss_conf 89928877971477848998998786657789699999977579799999999999998589989996989999899899
Q ss_pred EEEEECCCCCHHHHHCCCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEECCCCC
Q ss_conf 99963699948888302768-----------6767897889999999999999977228987683999876099815996
Q 001767 732 LVYEYLENNSLARALFGKEG-----------QCLNLDWATRKRICSDIARGLAYLHEESRLKIVHRDIKATNVLLDKDLN 800 (1016)
Q Consensus 732 lV~E~~~~gsL~~~l~~~~~-----------~~~~l~~~~~~~i~~qia~~L~yLH~~~~~~iiHrDlkp~NILl~~~~~ 800 (1016)
+|||||++|+|.++++.... ...+++|.+++.|+.|+|+||+|||+. +|+||||||+|||+++++.
T Consensus 120 lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLKp~NILl~~~~~ 196 (329)
T 4aoj_A 120 MVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGL---HFVHRDLATRNCLVGQGLV 196 (329)
T ss_dssp EEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTE
T ss_pred EEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC---CEECCCCCHHHEEECCCCC
T ss_conf 9998279993999998607541001221124578899999999999999999998408---8422666676489889996
Q ss_pred EEEECCCCCCCCCCCC-CCEEEECCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHH-CCCCCCCCCCHHHHHHHHHH
Q ss_conf 4561034643368888-511110146865448121113889973204579999999992-99999999913357588999
Q 001767 801 AKISDFGLAKLDEDEN-THISTRIAGTVGYMAPEYAMRGYLTDKADVYSFGIVALEIVS-GKSNTNYRPKEEFVYLLDWA 878 (1016)
Q Consensus 801 ~kL~DFGla~~~~~~~-~~~~~~~~Gt~~y~aPE~~~~~~~~~ksDV~SlGvil~ellt-G~~P~~~~~~~~~~~~~~~~ 878 (1016)
+||+|||+|+...... ........||+.|||||++.+..++.++|||||||++|||+| |+.||......+....+
T Consensus 197 ~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i--- 273 (329)
T 4aoj_A 197 VKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCI--- 273 (329)
T ss_dssp EEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHHHHHHH---
T ss_pred EEECCCCCCEECCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHH---
T ss_conf 89766603336567875300476455656658265447999966300105789999982899999998999999999---
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 9998708832014786899989999999999998720999999999889999831585
Q 001767 879 YVLQEQGNLLELVDPSLGSNFSKKEAMTMLNIALLCTNPSPTLRPTMSSAVSMLEGKT 936 (1016)
Q Consensus 879 ~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~l~~~Cl~~dP~~RPt~~ev~~~L~~~~ 936 (1016)
. .+. .+.. +..++..+.+++.+||+.||++||||+||++.|+...
T Consensus 274 ---~-~g~-----~~~~----p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~ 318 (329)
T 4aoj_A 274 ---T-QGR-----ELER----PRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALA 318 (329)
T ss_dssp ---H-HTC-----CCCC----CTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHH
T ss_pred ---H-CCC-----CCCC----CCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHH
T ss_conf ---8-089-----8998----6446399999999974759657929999999999874
No 2
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=417.95 Aligned_cols=259 Identities=28% Similarity=0.504 Sum_probs=217.4
Q ss_pred HCCCCCCCCCCCCCCEEEEEEECC------CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCEEE
Q ss_conf 238432372023797339998907------99599999925777131699999999998439987110022676162569
Q 001767 658 TNNFDAANKIGEGGFGPVYKGTLS------DGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCCIEGNQLL 731 (1016)
Q Consensus 658 ~~~f~~~~~LG~G~fG~Vy~~~~~------~~~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~~~~~~ 731 (1016)
.++|.+.+.||+|+||+||+|++. ++..||||+++.......+.|.+|+.++++++|||||+++|+|.+++.++
T Consensus 12 r~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~ 91 (299)
T 4asz_A 12 RHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLI 91 (299)
T ss_dssp GGGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEE
T ss_pred HHHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEE
T ss_conf 88929824982078829999998776667788799999967778589999999999998589988862879995699899
Q ss_pred EEEEECCCCCHHHHHCCCC---------CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEECCCCCEE
Q ss_conf 9996369994888830276---------8676789788999999999999997722898768399987609981599645
Q 001767 732 LVYEYLENNSLARALFGKE---------GQCLNLDWATRKRICSDIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNAK 802 (1016)
Q Consensus 732 lV~E~~~~gsL~~~l~~~~---------~~~~~l~~~~~~~i~~qia~~L~yLH~~~~~~iiHrDlkp~NILl~~~~~~k 802 (1016)
+|||||++|+|.+++.... .....++|.++..|+.|+|+||+|||++ +|+||||||+|||+++++.+|
T Consensus 92 lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDlKp~NILl~~~~~~K 168 (299)
T 4asz_A 92 MVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGENLLVK 168 (299)
T ss_dssp EEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEE
T ss_pred EEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHEEECCCCCEE
T ss_conf 99985899968999986086421112357778899999999999999999999759---904676577638987998689
Q ss_pred EECCCCCCCCCCCCCC-EEEECCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHH-CCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 6103464336888851-1110146865448121113889973204579999999992-9999999991335758899999
Q 001767 803 ISDFGLAKLDEDENTH-ISTRIAGTVGYMAPEYAMRGYLTDKADVYSFGIVALEIVS-GKSNTNYRPKEEFVYLLDWAYV 880 (1016)
Q Consensus 803 L~DFGla~~~~~~~~~-~~~~~~Gt~~y~aPE~~~~~~~~~ksDV~SlGvil~ellt-G~~P~~~~~~~~~~~~~~~~~~ 880 (1016)
|+|||+|+........ ......||+.|||||++.+..++.++|||||||++|||+| |+.||......+....+
T Consensus 169 i~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i----- 243 (299)
T 4asz_A 169 IGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECI----- 243 (299)
T ss_dssp ECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHH-----
T ss_pred ECCCCCCEECCCCCCEEECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH-----
T ss_conf 887300100678874166475134701038898707999703667788999999980899999998999999999-----
Q ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 9870883201478689998999999999999872099999999988999983158
Q 001767 881 LQEQGNLLELVDPSLGSNFSKKEAMTMLNIALLCTNPSPTLRPTMSSAVSMLEGK 935 (1016)
Q Consensus 881 ~~~~~~~~~~~d~~l~~~~~~~~~~~l~~l~~~Cl~~dP~~RPt~~ev~~~L~~~ 935 (1016)
..+.. +.. +...+..+.+++.+||+.||++||||++|++.|+..
T Consensus 244 --~~~~~-----~~~----p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~ 287 (299)
T 4asz_A 244 --TQGRV-----LQR----PRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNL 287 (299)
T ss_dssp --HHTCC-----CCC----CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred --HCCCC-----CCC----CCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHH
T ss_conf --80898-----899----741439999999997687966892999999999877
No 3
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=413.48 Aligned_cols=258 Identities=26% Similarity=0.396 Sum_probs=213.6
Q ss_pred CCCCCCCCCCCCCCEEEEEEECC------CCCEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCEEE
Q ss_conf 38432372023797339998907------99599999925777-131699999999998439987110022676162569
Q 001767 659 NNFDAANKIGEGGFGPVYKGTLS------DGAVIAVKQLSSKS-KQGNREFVNEIGMISALQHQNLVKLYGCCIEGNQLL 731 (1016)
Q Consensus 659 ~~f~~~~~LG~G~fG~Vy~~~~~------~~~~vAvK~~~~~~-~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~~~~~~ 731 (1016)
.+++..++||+|+||+||+|.+. +++.||||++.... ....+.|.+|+.++++++|||||+++|+|.+++.++
T Consensus 26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~ 105 (308)
T 4gt4_A 26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLS 105 (308)
T ss_dssp GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred HHCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEE
T ss_conf 88858669135888489999985776588886999999880149689999999999998589989877364998899889
Q ss_pred EEEEECCCCCHHHHHCCCCC------------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEECCCC
Q ss_conf 99963699948888302768------------676789788999999999999997722898768399987609981599
Q 001767 732 LVYEYLENNSLARALFGKEG------------QCLNLDWATRKRICSDIARGLAYLHEESRLKIVHRDIKATNVLLDKDL 799 (1016)
Q Consensus 732 lV~E~~~~gsL~~~l~~~~~------------~~~~l~~~~~~~i~~qia~~L~yLH~~~~~~iiHrDlkp~NILl~~~~ 799 (1016)
+|||||++|+|.++|..+.. ....++|.++..|+.|||+||+|||+. +|+||||||+|||+++++
T Consensus 106 lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLK~~NILl~~~~ 182 (308)
T 4gt4_A 106 MIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH---HVVHKDLATRNVLVYDKL 182 (308)
T ss_dssp EEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGG
T ss_pred EEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCCEEECCCC
T ss_conf 99981899949999986276543333221111246899999999999999999999868---997787362306887999
Q ss_pred CEEEECCCCCCCCCCCC-CCEEEECCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHH-CCCCCCCCCCHHHHHHHHH
Q ss_conf 64561034643368888-511110146865448121113889973204579999999992-9999999991335758899
Q 001767 800 NAKISDFGLAKLDEDEN-THISTRIAGTVGYMAPEYAMRGYLTDKADVYSFGIVALEIVS-GKSNTNYRPKEEFVYLLDW 877 (1016)
Q Consensus 800 ~~kL~DFGla~~~~~~~-~~~~~~~~Gt~~y~aPE~~~~~~~~~ksDV~SlGvil~ellt-G~~P~~~~~~~~~~~~~~~ 877 (1016)
.+||+|||+|+...... ........||+.|||||++.++.++.++|||||||++|||+| |+.||......+....+
T Consensus 183 ~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~~~~~i-- 260 (308)
T 4gt4_A 183 NVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVVEMI-- 260 (308)
T ss_dssp CEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHHH--
T ss_pred CEEECCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH--
T ss_conf 789887602023367774047345125776569899827999963000157999999996899999998999999999--
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 9999870883201478689998999999999999872099999999988999983158
Q 001767 878 AYVLQEQGNLLELVDPSLGSNFSKKEAMTMLNIALLCTNPSPTLRPTMSSAVSMLEGK 935 (1016)
Q Consensus 878 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~l~~~Cl~~dP~~RPt~~ev~~~L~~~ 935 (1016)
..+.. ...+..++..+.+++.+||+.||++||||.+|++.|+..
T Consensus 261 -----~~~~~---------~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 261 -----RNRQV---------LPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp -----HTTCC---------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred -----HCCCC---------CCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHC
T ss_conf -----81998---------999620369999999997587965792999999999853
No 4
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=408.57 Aligned_cols=257 Identities=26% Similarity=0.448 Sum_probs=214.9
Q ss_pred HCCCCCCCCCCCCCCEEEEEEECC-CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCEEEEEEEE
Q ss_conf 238432372023797339998907-9959999992577713169999999999843998711002267616256999963
Q 001767 658 TNNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCCIEGNQLLLVYEY 736 (1016)
Q Consensus 658 ~~~f~~~~~LG~G~fG~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E~ 736 (1016)
.+.|+..++||+|+||.||+|... +++.||||++........+.+.+|+.+++.++|||||++++++.+++.+|+||||
T Consensus 150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy 229 (423)
T 4fie_A 150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF 229 (423)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred HHHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 68438616962481848999999999989999998625546899999999999857998987168999989999999969
Q ss_pred CCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEECCCCCEEEECCCCCCCCCCCC
Q ss_conf 69994888830276867678978899999999999999772289876839998760998159964561034643368888
Q 001767 737 LENNSLARALFGKEGQCLNLDWATRKRICSDIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNAKISDFGLAKLDEDEN 816 (1016)
Q Consensus 737 ~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~qia~~L~yLH~~~~~~iiHrDlkp~NILl~~~~~~kL~DFGla~~~~~~~ 816 (1016)
|++|+|.+++... .+++..+..|+.||+.||+|||++ +|+||||||+|||++.++.+||+|||+|+......
T Consensus 230 ~~gG~L~~~i~~~-----~l~e~~~~~~~~qil~aL~ylH~~---~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~ 301 (423)
T 4fie_A 230 LEGGALTDIVTHT-----RMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV 301 (423)
T ss_dssp CTTEEHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSTTTEEECTTCCEEECCCTTCEECCSSC
T ss_pred CCCCCHHHHHHCC-----CCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCHHHEEECCCCCEEEECCCCCEECCCCC
T ss_conf 8998289887616-----989999999999999999999988---90446578777898589998980372654777887
Q ss_pred CCEEEECCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 51111014686544812111388997320457999999999299999999913357588999999870883201478689
Q 001767 817 THISTRIAGTVGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGNLLELVDPSLG 896 (1016)
Q Consensus 817 ~~~~~~~~Gt~~y~aPE~~~~~~~~~ksDV~SlGvil~elltG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~ 896 (1016)
. .....+||+.|||||++.+..|+.++||||+||++|||++|+.||......+....+ ... ..+.+.
T Consensus 302 ~-~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i------~~~------~~~~~~ 368 (423)
T 4fie_A 302 P-RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMI------RDN------LPPRLK 368 (423)
T ss_dssp C-CBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHH------HHS------CCCCCS
T ss_pred C-CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH------HCC------CCCCCC
T ss_conf 6-434666474727999977999996899999999999999787998986999999999------727------998876
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99899999999999987209999999998899998315857767312489
Q 001767 897 SNFSKKEAMTMLNIALLCTNPSPTLRPTMSSAVSMLEGKTAVQAPIIRRN 946 (1016)
Q Consensus 897 ~~~~~~~~~~l~~l~~~Cl~~dP~~RPt~~ev~~~L~~~~~~~~p~~~~~ 946 (1016)
........+.+|+.+||..||++|||+.|++ +|||+.+.
T Consensus 369 --~~~~~s~~~~dli~~~L~~dP~~R~ta~ell---------~Hp~~~~~ 407 (423)
T 4fie_A 369 --NLHKVSPSLKGFLDRLLVRDPAQRATAAELL---------KHPFLAKA 407 (423)
T ss_dssp --CTTSSCHHHHHHHHHHSCSSTTTSCCHHHHT---------TCGGGGGC
T ss_pred --CCCCCCHHHHHHHHHHCCCCHHHCCCHHHHH---------CCHHHCCC
T ss_conf --5012999999999998678956890999996---------09875689
No 5
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=408.18 Aligned_cols=258 Identities=26% Similarity=0.448 Sum_probs=214.9
Q ss_pred HCCCCCCCCCCCCCCEEEEEEECC-CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCEEEEEEEE
Q ss_conf 238432372023797339998907-9959999992577713169999999999843998711002267616256999963
Q 001767 658 TNNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCCIEGNQLLLVYEY 736 (1016)
Q Consensus 658 ~~~f~~~~~LG~G~fG~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E~ 736 (1016)
.+.|+..++||+|+||+||+|... +++.||||++........+.+.+|+.+++.++|||||++++++.+++.+|+||||
T Consensus 73 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy 152 (346)
T 4fih_A 73 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF 152 (346)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred HHHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 57538707960272829999999899989999998527656899999999999867998999199999989999999969
Q ss_pred CCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEECCCCCEEEECCCCCCCCCCCC
Q ss_conf 69994888830276867678978899999999999999772289876839998760998159964561034643368888
Q 001767 737 LENNSLARALFGKEGQCLNLDWATRKRICSDIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNAKISDFGLAKLDEDEN 816 (1016)
Q Consensus 737 ~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~qia~~L~yLH~~~~~~iiHrDlkp~NILl~~~~~~kL~DFGla~~~~~~~ 816 (1016)
|++|+|.+++... .+++..+..++.||+.||+|||++ +|+||||||+|||++.++.+||+|||+|+......
T Consensus 153 ~~gg~L~~~l~~~-----~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~ 224 (346)
T 4fih_A 153 LEGGALTDIVTHT-----RMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV 224 (346)
T ss_dssp CTTEEHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSSS
T ss_pred CCCCCHHHHHHCC-----CCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHEEECCCCCEEEECCCCCEECCCCC
T ss_conf 8998089998718-----989999999999999999999988---83556278899788799988990275753667887
Q ss_pred CCEEEECCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 51111014686544812111388997320457999999999299999999913357588999999870883201478689
Q 001767 817 THISTRIAGTVGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGNLLELVDPSLG 896 (1016)
Q Consensus 817 ~~~~~~~~Gt~~y~aPE~~~~~~~~~ksDV~SlGvil~elltG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~ 896 (1016)
. .....+||+.|||||++.+..|+.++||||+||++|||++|+.||......+....+ .. . ..+.+
T Consensus 225 ~-~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i------~~-~-----~~~~~- 290 (346)
T 4fih_A 225 P-RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMI------RD-N-----LPPRL- 290 (346)
T ss_dssp C-CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHH------HH-S-----SCCCC-
T ss_pred C-CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH------HC-C-----CCCCC-
T ss_conf 7-534656275827999977999996899999999999999787998985999999999------71-7-----99988-
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 998999999999999872099999999988999983158577673124899
Q 001767 897 SNFSKKEAMTMLNIALLCTNPSPTLRPTMSSAVSMLEGKTAVQAPIIRRNS 947 (1016)
Q Consensus 897 ~~~~~~~~~~l~~l~~~Cl~~dP~~RPt~~ev~~~L~~~~~~~~p~~~~~~ 947 (1016)
......+..+.+|+.+||..||++|||+.|++ +|||+.+..
T Consensus 291 -~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l---------~Hp~~~~~~ 331 (346)
T 4fih_A 291 -KNLHKVSPSLKGFLDRLLVRDPAQRATAAELL---------KHPFLAKAG 331 (346)
T ss_dssp -SCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHT---------TCGGGGGCC
T ss_pred -CCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHH---------CCHHHCCCC
T ss_conf -75022999999999998679956890999996---------098656899
No 6
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=406.81 Aligned_cols=269 Identities=26% Similarity=0.375 Sum_probs=216.5
Q ss_pred CCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCC------CCEEEEEECCCCC-HHHHHHHHHHHHHHHHCCC-CCEEEE
Q ss_conf 5789999982384323720237973399989079------9599999925777-1316999999999984399-871100
Q 001767 649 FTLRQIKAATNNFDAANKIGEGGFGPVYKGTLSD------GAVIAVKQLSSKS-KQGNREFVNEIGMISALQH-QNLVKL 720 (1016)
Q Consensus 649 ~~~~~~~~a~~~f~~~~~LG~G~fG~Vy~~~~~~------~~~vAvK~~~~~~-~~~~~~~~~E~~~l~~l~H-pnIv~l 720 (1016)
+...+.+...++|++.+.||+|+||+||+|.+.. ++.||||++.... ....+.|.+|+.++.++.| ||||++
T Consensus 54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l 133 (353)
T 4ase_A 54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 133 (353)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCCCCCEECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 88855170579959820982178959999998688854477599999976235868999999999999975799848778
Q ss_pred EEEEEEC-CEEEEEEEECCCCCHHHHHCCCCCC------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECC
Q ss_conf 2267616-2569999636999488883027686------------76789788999999999999997722898768399
Q 001767 721 YGCCIEG-NQLLLVYEYLENNSLARALFGKEGQ------------CLNLDWATRKRICSDIARGLAYLHEESRLKIVHRD 787 (1016)
Q Consensus 721 ~~~~~~~-~~~~lV~E~~~~gsL~~~l~~~~~~------------~~~l~~~~~~~i~~qia~~L~yLH~~~~~~iiHrD 787 (1016)
+|+|.+. +.+++|||||++|+|.++|...... ...++|.++..++.|||+||+|||++ +|+|||
T Consensus 134 ~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~---~iiHRD 210 (353)
T 4ase_A 134 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRD 210 (353)
T ss_dssp EEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSC
T ss_pred EEEEEECCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC---CEECCC
T ss_conf 89999469779999983898979999974356665433341011035689999999999999998767627---843574
Q ss_pred CCCCEEEECCCCCEEEECCCCCCCCCCCCC-CEEEECCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHH-CCCCCCC
Q ss_conf 987609981599645610346433688885-11110146865448121113889973204579999999992-9999999
Q 001767 788 IKATNVLLDKDLNAKISDFGLAKLDEDENT-HISTRIAGTVGYMAPEYAMRGYLTDKADVYSFGIVALEIVS-GKSNTNY 865 (1016)
Q Consensus 788 lkp~NILl~~~~~~kL~DFGla~~~~~~~~-~~~~~~~Gt~~y~aPE~~~~~~~~~ksDV~SlGvil~ellt-G~~P~~~ 865 (1016)
|||+|||+++++.+||+|||+|+....... ......+||+.|||||++.+..++.++|||||||++|||+| |+.||..
T Consensus 211 LK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~ 290 (353)
T 4ase_A 211 LAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPG 290 (353)
T ss_dssp CSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTT
T ss_pred CCCCCEEECCCCCEEECCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCCCC
T ss_conf 67211305799978979654322245688720325401466656989994699997553740689999998189999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 9913357588999999870883201478689998999999999999872099999999988999983158
Q 001767 866 RPKEEFVYLLDWAYVLQEQGNLLELVDPSLGSNFSKKEAMTMLNIALLCTNPSPTLRPTMSSAVSMLEGK 935 (1016)
Q Consensus 866 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~l~~~Cl~~dP~~RPt~~ev~~~L~~~ 935 (1016)
....+... ..... +. .+.. +...+.++.+++.+||+.||++||||+++++.|+..
T Consensus 291 ~~~~~~~~-----~~i~~-g~-----~~~~----p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~l 345 (353)
T 4ase_A 291 VKIDEEFC-----RRLKE-GT-----RMRA----PDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL 345 (353)
T ss_dssp CCCSHHHH-----HHHHH-TC-----CCCC----CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCHHHHHH-----HHHHC-CC-----CCCC----CCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHH
T ss_conf 89899999-----99973-89-----8888----865789999999997686966793999999999999
No 7
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=406.65 Aligned_cols=250 Identities=23% Similarity=0.411 Sum_probs=210.0
Q ss_pred CCCCCCCCCCCCCCEEEEEEECC-CCCEEEEEECCCC--CHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCEEEEEEE
Q ss_conf 38432372023797339998907-9959999992577--71316999999999984399871100226761625699996
Q 001767 659 NNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQLSSK--SKQGNREFVNEIGMISALQHQNLVKLYGCCIEGNQLLLVYE 735 (1016)
Q Consensus 659 ~~f~~~~~LG~G~fG~Vy~~~~~-~~~~vAvK~~~~~--~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E 735 (1016)
++|++.+.||+|+||+||+|+.. +++.||||++... .....+.+.+|+.++++++|||||++++++.+++.+|+|||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 25588479702779399999988999899999986587897999999999999987799898919999998999999994
Q ss_pred ECCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEECCCCCEEEECCCCCCCCCCC
Q ss_conf 36999488883027686767897889999999999999977228987683999876099815996456103464336888
Q 001767 736 YLENNSLARALFGKEGQCLNLDWATRKRICSDIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNAKISDFGLAKLDEDE 815 (1016)
Q Consensus 736 ~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~qia~~L~yLH~~~~~~iiHrDlkp~NILl~~~~~~kL~DFGla~~~~~~ 815 (1016)
||++|+|.+++.... ...+++.++..|+.||+.||+|||++ +|+||||||+|||++.++.+||+|||+|+.....
T Consensus 104 y~~gg~L~~~i~~~~--~~~~~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~ 178 (350)
T 4b9d_A 104 YCEGGDLFKRINAQK--GVLFQEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTVQLGDFGIARVLNST 178 (350)
T ss_dssp CCTTCBHHHHHHHTT--TCCCCHHHHHHHHHHHHHHHHHHHHT---TCEETTCCGGGEEECTTCCEEECSTTEESCCCHH
T ss_pred CCCCCCHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHHHC---CEEECCCCHHHEEECCCCCEEECCCCCCEEECCC
T ss_conf 889983999999738--99997899999999999999999989---9151359789979878999897646521440688
Q ss_pred CCCEEEECCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 85111101468654481211138899732045799999999929999999991335758899999987088320147868
Q 001767 816 NTHISTRIAGTVGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGNLLELVDPSL 895 (1016)
Q Consensus 816 ~~~~~~~~~Gt~~y~aPE~~~~~~~~~ksDV~SlGvil~elltG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l 895 (1016)
. ......+||+.|||||++.+..++.++||||+||++|||++|+.||......+....+ . .+.. +..
T Consensus 179 ~-~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i-----~--~~~~-----~~~ 245 (350)
T 4b9d_A 179 V-ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKI-----I--SGSF-----PPV 245 (350)
T ss_dssp H-HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHH-----H--HTCC-----CCC
T ss_pred C-CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH-----H--CCCC-----CCC
T ss_conf 5-4101457883603999987999895999999999999999787998996999999999-----8--0899-----999
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 99989999999999998720999999999889999
Q 001767 896 GSNFSKKEAMTMLNIALLCTNPSPTLRPTMSSAVS 930 (1016)
Q Consensus 896 ~~~~~~~~~~~l~~l~~~Cl~~dP~~RPt~~ev~~ 930 (1016)
...+ +..+.+|+.+||+.||++|||+.|+++
T Consensus 246 ~~~~----s~~~~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 246 SLHY----SYDLRSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp CTTS----CHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CCCC----CHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf 7557----999999999985589667908999963
No 8
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=404.17 Aligned_cols=263 Identities=24% Similarity=0.263 Sum_probs=214.6
Q ss_pred HCCCCCCCCCCCCCCEEEEEEECC-CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCEEEEEEEE
Q ss_conf 238432372023797339998907-9959999992577713169999999999843998711002267616256999963
Q 001767 658 TNNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQLSSKSKQGNREFVNEIGMISALQHQNLVKLYGCCIEGNQLLLVYEY 736 (1016)
Q Consensus 658 ~~~f~~~~~LG~G~fG~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E~ 736 (1016)
.+.|+..++||+|+||.||+|+.+ +++.||||++..... ..+|+.+++.++|||||++++++.+++.+++||||
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy 131 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMEL 131 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred HHHEEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHHH-----HHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 3351768685138780999999889998999999788886-----99999999857998999399999989999999966
Q ss_pred CCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEECCCC-CEEEECCCCCCCCCCC
Q ss_conf 699948888302768676789788999999999999997722898768399987609981599-6456103464336888
Q 001767 737 LENNSLARALFGKEGQCLNLDWATRKRICSDIARGLAYLHEESRLKIVHRDIKATNVLLDKDL-NAKISDFGLAKLDEDE 815 (1016)
Q Consensus 737 ~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~qia~~L~yLH~~~~~~iiHrDlkp~NILl~~~~-~~kL~DFGla~~~~~~ 815 (1016)
|++|+|.+++.... .+++..+..++.|++.||+|||++ +|+||||||+|||++.++ .+||+|||+|+.....
T Consensus 132 ~~gg~L~~~l~~~~----~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~ 204 (336)
T 4g3f_A 132 LEGGSLGQLIKQMG----CLPEDRALYYLGQALEGLEYLHTR---RILHGDVKADNVLLSSDGSRAALCDFGHALCLQPD 204 (336)
T ss_dssp CTTCBHHHHHHHHS----SCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCCGGGEEECTTSCCEEECCCTTCEEC---
T ss_pred CCCCCHHHHHHHCC----CCCHHHHHHHHHHHHHHHHHHHHC---CCEECCCCHHHEEEECCCCEEEEEECCCCEECCCC
T ss_conf 59986999998769----999999999999999999999988---90426167788799589997999627877685678
Q ss_pred CCC----EEEECCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 851----1110146865448121113889973204579999999992999999999133575889999998708832014
Q 001767 816 NTH----ISTRIAGTVGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGNLLELV 891 (1016)
Q Consensus 816 ~~~----~~~~~~Gt~~y~aPE~~~~~~~~~ksDV~SlGvil~elltG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 891 (1016)
... .....+||+.|||||++.+..++.++||||+||++|||++|+.||......+....+ .......
T Consensus 205 ~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i-----~~~~~~~---- 275 (336)
T 4g3f_A 205 GLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKI-----ASEPPPI---- 275 (336)
T ss_dssp ---------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHH-----HHSCCGG----
T ss_pred CCCCCEECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH-----HCCCCCC----
T ss_conf 7654022178545580200899988999890899999999999999786998998999999999-----8089980----
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHC----CCCCCCCCCCCCC
Q ss_conf 786899989999999999998720999999999889999831----5857767312489
Q 001767 892 DPSLGSNFSKKEAMTMLNIALLCTNPSPTLRPTMSSAVSMLE----GKTAVQAPIIRRN 946 (1016)
Q Consensus 892 d~~l~~~~~~~~~~~l~~l~~~Cl~~dP~~RPt~~ev~~~L~----~~~~~~~p~~~~~ 946 (1016)
..+ +...+..+.+++.+||+.||++|||+.|+++.|. ....+.+||....
T Consensus 276 -~~~----~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~~~l~hPw~~~~ 329 (336)
T 4g3f_A 276 -REI----PPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVGGLKSPWKGEY 329 (336)
T ss_dssp -GGS----CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTTSSCSCSSSSC
T ss_pred -HHC----CCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf -025----866799999999997628976895999999999999754432169876777
No 9
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=403.15 Aligned_cols=259 Identities=28% Similarity=0.465 Sum_probs=208.6
Q ss_pred HHCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCC--CHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCEEEEEE
Q ss_conf 82384323720237973399989079959999992577--7131699999999998439987110022676162569999
Q 001767 657 ATNNFDAANKIGEGGFGPVYKGTLSDGAVIAVKQLSSK--SKQGNREFVNEIGMISALQHQNLVKLYGCCIEGNQLLLVY 734 (1016)
Q Consensus 657 a~~~f~~~~~LG~G~fG~Vy~~~~~~~~~vAvK~~~~~--~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~~~~~~lV~ 734 (1016)
..+++...++||+|+||+||+|++++ .||||+++.. .....+.|.+|+.++++++|||||+++|++.+ +.+++||
T Consensus 34 ~~~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVm 110 (307)
T 3omv_A 34 EASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVT 110 (307)
T ss_dssp CTTSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEE
T ss_pred CHHHEEEEEEEEECCCCEEEEEEECC--CEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CEEEEEE
T ss_conf 47994984498208886899999899--68999997268999999999999999985899887469999978-9589999
Q ss_pred EECCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEECCCCCEEEECCCCCCCCCC
Q ss_conf 63699948888302768676789788999999999999997722898768399987609981599645610346433688
Q 001767 735 EYLENNSLARALFGKEGQCLNLDWATRKRICSDIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNAKISDFGLAKLDED 814 (1016)
Q Consensus 735 E~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~qia~~L~yLH~~~~~~iiHrDlkp~NILl~~~~~~kL~DFGla~~~~~ 814 (1016)
|||++|+|.+++.... ..++|.++..|+.|||+||+|||++ +|+||||||+|||+++++.+||+|||+|+....
T Consensus 111 Ey~~gGsL~~~l~~~~---~~l~~~~~~~i~~qia~gL~yLH~~---~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~ 184 (307)
T 3omv_A 111 QWCEGSSLYKHLHVQE---TKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSR 184 (307)
T ss_dssp ECCSSCBHHHHHHTSC---CCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCSSSEEEETTEEEEECCCSSCBC---
T ss_pred ECCCCCCHHHHHHHCC---CCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHEEECCCCCEEEEECCCCEECCC
T ss_conf 7489987889875248---9999999999999999999999779---952785578997888999089944157542466
Q ss_pred CC-CCEEEECCCCCCCCCHHHHCC---CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 88-511110146865448121113---88997320457999999999299999999913357588999999870883201
Q 001767 815 EN-THISTRIAGTVGYMAPEYAMR---GYLTDKADVYSFGIVALEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGNLLEL 890 (1016)
Q Consensus 815 ~~-~~~~~~~~Gt~~y~aPE~~~~---~~~~~ksDV~SlGvil~elltG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (1016)
.. .......+||+.|||||++.+ +.++.++|||||||++|||+||+.||........... . ...+.
T Consensus 185 ~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~-----~-~~~~~---- 254 (307)
T 3omv_A 185 WSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIF-----M-VGRGY---- 254 (307)
T ss_dssp ---------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHH-----H-HHTTC----
T ss_pred CCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH-----H-HHCCC----
T ss_conf 7764031564468772498786146899878687757289999999978899899996999999-----9-96588----
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 478689998999999999999872099999999988999983158
Q 001767 891 VDPSLGSNFSKKEAMTMLNIALLCTNPSPTLRPTMSSAVSMLEGK 935 (1016)
Q Consensus 891 ~d~~l~~~~~~~~~~~l~~l~~~Cl~~dP~~RPt~~ev~~~L~~~ 935 (1016)
..|.+ ...+..++..+.+++.+||+.||++||||.||++.|+..
T Consensus 255 ~~p~~-~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l 298 (307)
T 3omv_A 255 ASPDL-SKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELL 298 (307)
T ss_dssp CCCCS-TTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHH
T ss_pred CCCCC-CCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHH
T ss_conf 88872-003544569999999997577976890989999999997
No 10
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=1.00 E-value=1 Score=398.99 Aligned_cols=260 Identities=22% Similarity=0.320 Sum_probs=214.3
Q ss_pred CCCCCCCCCCCCCCEEEEEEECC-CCCEEEEEECCCCC---HHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCEEEEEE
Q ss_conf 38432372023797339998907-99599999925777---131699999999998439987110022676162569999
Q 001767 659 NNFDAANKIGEGGFGPVYKGTLS-DGAVIAVKQLSSKS---KQGNREFVNEIGMISALQHQNLVKLYGCCIEGNQLLLVY 734 (1016)
Q Consensus 659 ~~f~~~~~LG~G~fG~Vy~~~~~-~~~~vAvK~~~~~~---~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~~~~~~lV~ 734 (1016)
++|++.+.||+|+||+||+|+.. +++.||+|++.... ....+.+.+|+++++.++|||||++++++.+++.+|+||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CCCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEE
T ss_conf 23689889831648499999999999899999988888779789999999999998679989891999997389899999
Q ss_pred EECCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEECCCCCEEEECCCCCCCCCC
Q ss_conf 63699948888302768676789788999999999999997722898768399987609981599645610346433688
Q 001767 735 EYLENNSLARALFGKEGQCLNLDWATRKRICSDIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNAKISDFGLAKLDED 814 (1016)
Q Consensus 735 E~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~qia~~L~yLH~~~~~~iiHrDlkp~NILl~~~~~~kL~DFGla~~~~~ 814 (1016)
||+++|+|.+++.... .+++..+..++.||+.||+|||++ +|+||||||+|||++.++.+||+|||+|+....
T Consensus 112 Ey~~gG~L~~~i~~~~----~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~ 184 (311)
T 4aw0_A 112 SYAKNGELLKYIRKIG----SFDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSP 184 (311)
T ss_dssp CCCTTEEHHHHHHHHS----SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred ECCCCCCHHHHHHHCC----CCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHEEECCCCCEEEEECCCCEECCC
T ss_conf 6489989999998749----999999999999999999999988---782687878996985898889987687502577
Q ss_pred CC-CCEEEECCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 88-51111014686544812111388997320457999999999299999999913357588999999870883201478
Q 001767 815 EN-THISTRIAGTVGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGNLLELVDP 893 (1016)
Q Consensus 815 ~~-~~~~~~~~Gt~~y~aPE~~~~~~~~~ksDV~SlGvil~elltG~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 893 (1016)
.. .......+||+.|||||++.+..++.++||||+||++|||++|+.||......+.... +... . .
T Consensus 185 ~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~-----i~~~--~------~ 251 (311)
T 4aw0_A 185 ESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGLIFAK-----IIKL--E------Y 251 (311)
T ss_dssp TTTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHH-----HHHT--C------C
T ss_pred CCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH-----HHCC--C------C
T ss_conf 8776543675568030799897689999689899899999999749899899799999999-----9719--9------9
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 6899989999999999998720999999999889999831585776731248
Q 001767 894 SLGSNFSKKEAMTMLNIALLCTNPSPTLRPTMSSAVSMLEGKTAVQAPIIRR 945 (1016)
Q Consensus 894 ~l~~~~~~~~~~~l~~l~~~Cl~~dP~~RPt~~ev~~~L~~~~~~~~p~~~~ 945 (1016)
..+..+ ..++.+|+.+|+..||++|||+.|+... ....+|||+..
T Consensus 252 ~~p~~~----s~~~~dli~~lL~~dp~~R~t~~e~~~~---~~i~~Hp~F~~ 296 (311)
T 4aw0_A 252 DFPEKF----FPKARDLVEKLLVLDATKRLGCEEMEGY---GPLKAHPFFES 296 (311)
T ss_dssp CCCTTC----CHHHHHHHHHHSCSSGGGSTTSGGGTCH---HHHHTSGGGTT
T ss_pred CCCCCC----CHHHHHHHHHHCCCCHHHCCCHHHHCCC---HHHHCCCCCCC
T ss_conf 999656----9999999999762897578096797587---79877987589
Done!