Query 001770
Match_columns 1015
No_of_seqs 530 out of 2607
Neff 5.9
Searched_HMMs 29240
Date Tue Mar 26 17:26:05 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001770.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1065-1069//hhsearch_pdb/001770hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ihp_A Ubiquitin carboxyl-term 1.0 1 1 533.7 25.6 340 417-785 290-853 (854)
2 2y6e_A Ubiquitin carboxyl-term 1.0 1 1 506.1 31.5 313 475-790 6-364 (367)
3 2gfo_A Ubiquitin carboxyl-term 1.0 1 1 498.7 28.6 308 475-785 60-396 (396)
4 3nhe_A Ubiquitin carboxyl-term 1.0 1 1 487.9 30.3 309 475-787 7-345 (348)
5 3i3t_A Ubiquitin carboxyl-term 1.0 1 1 487.7 22.9 308 475-787 1-353 (355)
6 2ayn_A Ubiquitin carboxyl-term 1.0 1 1 486.7 22.5 307 475-788 12-397 (404)
7 1vjv_A Ubiquitin carboxyl-term 1.0 1 1 479.5 23.5 288 475-785 22-414 (415)
8 3mhs_A Ubiquitin carboxyl-term 1.0 1 1 479.2 27.4 307 475-786 139-475 (476)
9 2f1z_A Ubiquitin carboxyl-term 1.0 1 1 474.4 25.8 294 474-787 172-486 (522)
10 1nb8_A Ubiquitin carboxyl-term 1.0 1 1 474.0 27.4 293 475-787 4-317 (353)
No 1
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=533.72 Aligned_cols=340 Identities=22% Similarity=0.299 Sum_probs=294.0
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCC-EEEECCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 98883000063110384211001110245337531280-76100113432000001378688553138996225899999
Q 001770 417 QGSNVVSKMGIMKMMGLRKSTKLRQDSSELWHDQHRKL-KMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQC 495 (1015)
Q Consensus 417 ~g~~hLs~fGI~k~~~L~~~~Kteks~~eL~~d~nk~~-~~l~~~E~~~~l~~~~~~~~~gp~GL~NlGNTCYlNSVLQ~ 495 (1015)
....||++||| ++.++.||++++.+|+.++|.++ +|....+....+. ..++ +|++||.|+|||||||||||+
T Consensus 290 ~l~~~l~~~gi----~~~~~~kt~k~~~el~~~~n~~~g~~~~~~~~g~~l~--p~~~-~G~~GL~NlGNTCYmNSvLQ~ 362 (854)
T 3ihp_A 290 SLAEHLSHFGI----DMLKMQKTDKTMTELEIDMNQRIGEWELIQESGVPLK--PLFG-PGYTGIRNLGNSCYLNSVVQV 362 (854)
T ss_dssp THHHHHHHTTC----CC-------------------------------------CCCS-TTCCCBCCCSSCHHHHHHHHH
T ss_pred CHHHHHHHHCC----CCCCCCCCCHHHHHHHHHHCCCCCHHHHHCCCCCCCC--CCCC-CCCCCEEECCCCEEHHHHHHH
T ss_conf 27889987372----2244445501210100332222001333133576235--4567-886551766776203379999
Q ss_pred HHCCHHHHHHHHHCCCC---CCCCCCCCHHHHHHHHHHHHHHC---------------------CCCCCCHHHHHHHHHH
Q ss_conf 95489899999952347---65689850599999999999970---------------------8999893899999984
Q 001770 496 LTCTKPLVIYLLRRSHS---SACCGKDWCLMCELEQHVMMLRE---------------------SAGPLSPGRILSHMRS 551 (1015)
Q Consensus 496 L~sip~fr~~Ll~~~~~---~~~~~~~~~l~~qL~kL~~~L~s---------------------s~~~isP~~ll~~L~~ 551 (1015)
|+++|+|+++|+...+. .....+..++.++|++|+..|+. ....+.|..|+..++.
T Consensus 363 L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~~~~~~~~~~~~~~~isP~~f~~~l~~ 442 (854)
T 3ihp_A 363 LFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGERVPEQKEVQDGIAPRMFKALIGK 442 (854)
T ss_dssp HTTSHHHHHHHTTTHHHHHHHCCSCGGGCHHHHHHHHHHHHHSCC---------------------CCBCCHHHHHHHTT
T ss_pred HHCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 85729999999854344302566785411889999999987456645444211222233333467775481999999864
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEEEEEE
Q ss_conf 01236999867599999999999999997412999887976444530102345388779996678984310000134554
Q 001770 552 ISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTL 631 (1015)
Q Consensus 552 ~~~~F~~g~QQDA~EFL~~LLd~Le~e~l~~~~~~~~~~~~~~e~s~I~~lF~G~l~~~ikC~~Cg~~S~~~E~f~~LsL 631 (1015)
.++.|..++||||+|||.+||+.|+.++. ..+.|.++|+|.+.++++|..|++++.+.++|++|+|
T Consensus 443 ~~~~F~~~~QQDA~EFl~~LLd~L~~el~--------------~~s~i~~lF~G~l~s~i~C~~C~~vs~t~e~F~~LsL 508 (854)
T 3ihp_A 443 GHPEFSTNRQQDAQEFFLHLINMVERNCR--------------SSENPNEVFRFLVEEKIKCLATEKVKYTQRVDYIMQL 508 (854)
T ss_dssp TCTTTTSSSCCBHHHHHHHHHHHHHHTCT--------------TSCCGGGGTCEEEEEEEEETTTTEEEEEEEEESEEEE
T ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHHHHC--------------CCCCCHHHCCCEEEEEEEECCCCCEEEEEEECEEEEE
T ss_conf 03311214433789999999999998736--------------5688222107358899996489977677630647884
Q ss_pred ECCCC-------------------------------CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCC
Q ss_conf 02366-------------------------------35589999731799768898742246555321000333330269
Q 001770 632 EIYGW-------------------------------VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAP 680 (1015)
Q Consensus 632 ~I~~~-------------------------------~~sLed~L~~f~~~E~Ldg~nky~C~~Ck~k~~A~K~~~I~slP 680 (1015)
+|+.. ..+|++||+.|+.+|.|+| |+|++|+.++.+.|+.+|.++|
T Consensus 509 ~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~sL~dcL~~f~~~E~Le~---y~C~~C~~k~~a~K~~~i~~lP 585 (854)
T 3ihp_A 509 PVPMDAALNKEELLEYEEKKRQAEEEKMALPELVRAQVPFSSCLEAYGAPEQVDD---FWSTALQAKSVAVKTTRFASFP 585 (854)
T ss_dssp CCCGGGCTTHHHHHHHHHHHHHHHHTTCCCCCCCCEECCHHHHHHHHHSCEEEEE---EEETTTTEEEEEEEEEEESSCC
T ss_pred ECCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEE---EECCCCCCCCEEEEEEEEEECC
T ss_conf 5786323442100010011110002355443245677779999998558407533---1035568730053888821289
Q ss_pred CEEEEEEEEEECC---CCCCCCCEEECCCCCCCCCCCCCCC---------------------------------------
Q ss_conf 5389999831024---2232540686787678777547899---------------------------------------
Q 001770 681 NILTIVLKRFQEG---RYGKINKCITFPEMLDMMPFMTGTG--------------------------------------- 718 (1015)
Q Consensus 681 ~iLiIqLkRF~~~---~~~Ki~~~V~FP~~LDLs~yl~~~~--------------------------------------- 718 (1015)
+||+|||+||.++ ...|++..|.||..|||.+|+..+.
T Consensus 586 ~vLiihLkRF~~d~~~~~~Ki~~~V~FP~~LDl~~y~~~~~q~~E~~lp~~~~~~~~~~~~~~~~~d~~~l~~L~~mGf~ 665 (854)
T 3ihp_A 586 DYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQPGEEELPDIAPPLVTPDEPKAPMLDESVIIQLVEMGFP 665 (854)
T ss_dssp SEEEEEECCEEECGGGCEEECCEECCCCSEEECGGGBCCCSCTTCCBCCCC----------------CHHHHHHHHHTCC
T ss_pred CEEEEEEEHHEECCCCCEEECCEEEECCCCEEHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf 66799945313567773277886985688070688506788987212133566555655445667688999999864897
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001770 719 -------------------------------------------------------------------------------- 718 (1015)
Q Consensus 719 -------------------------------------------------------------------------------- 718 (1015)
T Consensus 666 ~~~~~kal~~t~n~~~e~a~~wl~~hmdd~di~~p~~~~~~~~~~s~~~~~~~~~~e~i~~l~~mGf~~~~a~~aL~~t~ 745 (854)
T 3ihp_A 666 MDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSGPGSTSAAADPPPEDCVTTIVSMGFSRDQALKALRATN 745 (854)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHTTSCGGGSCCCCC--------------CCHHHHHHHHTTTCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf 78888888631798567776777641676332465556666666665555688998999999982887889999998605
Q ss_pred ----------------------------------------------CCCCCEEEEEEEEEECCCCCCCCCCEEEEEECCC
Q ss_conf ----------------------------------------------9998325999999973799999970999999799
Q 001770 719 ----------------------------------------------DTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQ 752 (1015)
Q Consensus 719 ----------------------------------------------~~~~~YeL~AVIvH~G~~~S~~sGHYvayVK~~d 752 (1015)
+++..|+|+|||+|.|. ++++||||||||. +
T Consensus 746 ~~~eraidwlfs~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~--~~~~GHY~~~~~~-~ 822 (854)
T 3ihp_A 746 NSLERAVDWIFSHIDDLDAEAAMDISEGRSAADSISESVPVGPKVRDGPGKYQLFAFISHMGT--STMCGHYVCHIKK-E 822 (854)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHSCC------------------CCCCCCCSEEEEEEEEEEESS--CSSCCEEEEEEEE-T
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECC--CCCCCCEEEEEEE-C
T ss_conf 738777776406844334321001222233456543445555788889845999999996448--9997282999975-9
Q ss_pred CCEEEEECCCEEEECCCCCCCCCCEEEEEEECC
Q ss_conf 969998099112418664567973899999839
Q 001770 753 GTWFRIDDTQVHPVPMSQVMSEGAYMLFYMRSC 785 (1015)
Q Consensus 753 gkW~~FNDs~Vt~vs~eeV~s~~AYILfY~R~s 785 (1015)
++||+|||++|+.+ +++....||||||+|++
T Consensus 823 ~~W~~~nD~~V~~~--~~~~~~~aYilfY~R~~ 853 (854)
T 3ihp_A 823 GRWVIYNDQKVCAS--EKPPKDLGYIYFYQRVA 853 (854)
T ss_dssp TEEEEEETTEEEEC--SSCCTTSCSEEEEEECC
T ss_pred CEEEEEECCEEEEC--CCCCCCCCEEEEEEECC
T ss_conf 98999977715871--46677851699999568
No 2
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=1.00 E-value=1 Score=506.13 Aligned_cols=313 Identities=27% Similarity=0.442 Sum_probs=271.2
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCC-----CCCCCHHHHHHHHHHHHHHCCC-CCCCHHHHHHH
Q ss_conf 68855313899622589999995489899999952347656-----8985059999999999997089-99893899999
Q 001770 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC-----CGKDWCLMCELEQHVMMLRESA-GPLSPGRILSH 548 (1015)
Q Consensus 475 ~gp~GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~~~~~-----~~~~~~l~~qL~kL~~~L~ss~-~~isP~~ll~~ 548 (1015)
+|++||.|+|||||||||||+|+++|+|+++++...+.... .....++.++|+.|+..|+.+. ..+.|..|+..
T Consensus 6 ~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~~~ 85 (367)
T 2y6e_A 6 PGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFKTQ 85 (367)
T ss_dssp TTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 89808764885649899999997779999999737225550446988864299999999999997489987387999999
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC--CCCCC----------------CCCCCCCCCCCCEEEEEE
Q ss_conf 984012369998675999999999999999974129998--87976----------------444530102345388779
Q 001770 549 MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGES--KVDPR----------------LQETTFIQHTFGGRLWSK 610 (1015)
Q Consensus 549 L~~~~~~F~~g~QQDA~EFL~~LLd~Le~e~l~~~~~~~--~~~~~----------------~~e~s~I~~lF~G~l~~~ 610 (1015)
++..++.|..++||||+|||++|||.|++++........ ..+.. ....++|.++|+|++.++
T Consensus 86 l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l~s~ 165 (367)
T 2y6e_A 86 VGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKST 165 (367)
T ss_dssp HHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEEEEE
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEE
T ss_conf 99740410898787879999999999999987512577644556567960677899999988706982301337688435
Q ss_pred EEECCCCCCCCCEEEEEEEEEECCCC------------------CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 99667898431000013455402366------------------355899997317997688987422465553210003
Q 001770 611 VKCLRCSHESERYENIMDLTLEIYGW------------------VESLEDALTQFTSPEDLDGENMYKCARCATYVRARK 672 (1015)
Q Consensus 611 ikC~~Cg~~S~~~E~f~~LsL~I~~~------------------~~sLed~L~~f~~~E~Ldg~nky~C~~Ck~k~~A~K 672 (1015)
++|..|++++.+.|+|++|+|+||.. ..+|++||+.|+.+|.++++|+|+|++|+.++.|.|
T Consensus 166 ~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~~~a~K 245 (367)
T 2y6e_A 166 LVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATK 245 (367)
T ss_dssp EECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-CCEEETTTTEEECCEE
T ss_pred EEECCCCCEEEEECCCEEEEEECCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 89089999853375670577317987677501332056445678888999999861616478998724878788750789
Q ss_pred EEEEECCCCEEEEEEEEEECCC--CCCCCCEEECCC-CCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCEEEEEE
Q ss_conf 3333026953899998310242--232540686787-6787775478999998325999999973799999970999999
Q 001770 673 QLSIHEAPNILTIVLKRFQEGR--YGKINKCITFPE-MLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIK 749 (1015)
Q Consensus 673 ~~~I~slP~iLiIqLkRF~~~~--~~Ki~~~V~FP~-~LDLs~yl~~~~~~~~~YeL~AVIvH~G~~~S~~sGHYvayVK 749 (1015)
+..|.++|+||+|||+||.+.. ..|++..|.||. .|||.+|+.........|+|+|||+|.|. .++|||+||+|
T Consensus 246 ~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~---~~~GHY~a~~~ 322 (367)
T 2y6e_A 246 KFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYGA---MGVGHYTAYAK 322 (367)
T ss_dssp EEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSSSCCCEEEEEEEEEEECS---SSSCEEEEEEE
T ss_pred EEEEECCCCEEEEEEECEEECCCCCEECCCEEEECCCCCCHHHHCCCCCCCCCEEEEEEEEECCCC---CCCCEEEEEEE
T ss_conf 988824885789998476505766335376389317767756642587889714889988562899---98873667887
Q ss_pred CC-CCCEEEEECCCEEEECCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 79-996999809911241866456797389999983999984
Q 001770 750 DM-QGTWFRIDDTQVHPVPMSQVMSEGAYMLFYMRSCPRPRR 790 (1015)
Q Consensus 750 ~~-dgkW~~FNDs~Vt~vs~eeV~s~~AYILfY~R~s~~~~~ 790 (1015)
.. +++||+|||+.|+++++++|....||||||+|.+..+..
T Consensus 323 ~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~~~~~ 364 (367)
T 2y6e_A 323 NKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDDEFYK 364 (367)
T ss_dssp CTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECCC----
T ss_pred CCCCCEEEEECCCCCEECCHHHCCCCCCEEEEEEECCCCCCC
T ss_conf 699990899779873399888868897379999973898789
No 3
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=1.00 E-value=1 Score=498.71 Aligned_cols=308 Identities=29% Similarity=0.482 Sum_probs=266.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCC-----CCCCCHHHHHHHHHHHHHHCCC-CCCCHHHHHHH
Q ss_conf 68855313899622589999995489899999952347656-----8985059999999999997089-99893899999
Q 001770 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC-----CGKDWCLMCELEQHVMMLRESA-GPLSPGRILSH 548 (1015)
Q Consensus 475 ~gp~GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~~~~~-----~~~~~~l~~qL~kL~~~L~ss~-~~isP~~ll~~ 548 (1015)
++++||.|+|||||||||||+|+++|+|+++++...+.... .....++.++|..|+..|+... ..++|..|+..
T Consensus 60 ~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~i~P~~f~~~ 139 (396)
T 2gfo_A 60 PALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKIT 139 (396)
T ss_dssp TTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEEEECCHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEECHHHHHHH
T ss_conf 78666561687416729999853788999999707421331235877741099999999999997099843778999999
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC-------CCCC-----------CCCCCCCCCCCCCEEEEEE
Q ss_conf 984012369998675999999999999999974129998-------8797-----------6444530102345388779
Q 001770 549 MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGES-------KVDP-----------RLQETTFIQHTFGGRLWSK 610 (1015)
Q Consensus 549 L~~~~~~F~~g~QQDA~EFL~~LLd~Le~e~l~~~~~~~-------~~~~-----------~~~e~s~I~~lF~G~l~~~ 610 (1015)
++..++.|..++||||+|||++|||.|++++........ ..+. .....++|.++|+|++.++
T Consensus 140 l~~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~l~s~ 219 (396)
T 2gfo_A 140 IGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKST 219 (396)
T ss_dssp HHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCEEEEEE
T ss_pred HHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCEEEEE
T ss_conf 99745433487887759999999999999986531455445555556642567789998766506883402008688777
Q ss_pred EEECCCCCCCCCEEEEEEEEEECCCC-CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEE
Q ss_conf 99667898431000013455402366-35589999731799768898742246555321000333330269538999983
Q 001770 611 VKCLRCSHESERYENIMDLTLEIYGW-VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKR 689 (1015)
Q Consensus 611 ikC~~Cg~~S~~~E~f~~LsL~I~~~-~~sLed~L~~f~~~E~Ldg~nky~C~~Ck~k~~A~K~~~I~slP~iLiIqLkR 689 (1015)
++|..|+.++.+.|+|++|+|+|+.. ..+|++||+.|+..|.|+|+|+|+|++|+.++.|.|+..|.++|+||+|||+|
T Consensus 220 i~C~~C~~~s~~~e~f~~LsL~ip~~~~~sL~~~L~~f~~~E~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkR 299 (396)
T 2gfo_A 220 VQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKR 299 (396)
T ss_dssp EEETTTCCEEEEEEEESSEEECCSCSSEEEHHHHHHHHTSCEEECSTTCEEETTTTEEECEEEEEEEEECCSEEEEEECC
T ss_pred EEECCCCCEECCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECC
T ss_conf 88579996203244631233326634657999999983772251687641157755545358999980378579998501
Q ss_pred EECCC--CCCCCCEEECC-CCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCEEEEEECC-CCCEEEEECCCEEE
Q ss_conf 10242--23254068678-7678777547899999832599999997379999997099999979-99699980991124
Q 001770 690 FQEGR--YGKINKCITFP-EMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM-QGTWFRIDDTQVHP 765 (1015)
Q Consensus 690 F~~~~--~~Ki~~~V~FP-~~LDLs~yl~~~~~~~~~YeL~AVIvH~G~~~S~~sGHYvayVK~~-dgkW~~FNDs~Vt~ 765 (1015)
|.+.. ..|++..|.|| +.|||.+|+.+.......|+|+|||+|.|. +++|||+||+|.. +++||+|||+.|++
T Consensus 300 F~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~---~~~GHY~a~v~~~~~~~W~~fnD~~V~~ 376 (396)
T 2gfo_A 300 FSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGG---LDGGHYTAYCKNAARQRWFKFDDHEVSD 376 (396)
T ss_dssp EEECSSSEEECCCEEECCSSCBCCGGGBCSCCSSCCCBEEEEEEEEESC---TTTCEEEEEEEETTTTEEEEEETTEEEE
T ss_pred EECCCCCCEECCCEEECCHHHCCCCCCCCCCCCCCCEEEEEEEEEECCC---CCCCCEEEEECCCCCCCEEEEECCCEEE
T ss_conf 1025761001674485453424566433477778735889999985699---9998307998579999879974887389
Q ss_pred ECCCCCCCCCCEEEEEEECC
Q ss_conf 18664567973899999839
Q 001770 766 VPMSQVMSEGAYMLFYMRSC 785 (1015)
Q Consensus 766 vs~eeV~s~~AYILfY~R~s 785 (1015)
++.++|....||||||+|.+
T Consensus 377 v~~~~v~~~~aYiLfY~r~~ 396 (396)
T 2gfo_A 377 ISVSSVKSSAAYILFYTSLG 396 (396)
T ss_dssp CCHHHHSCTTEEEEEEECC-
T ss_pred CCHHHCCCCCCEEEEEEECC
T ss_conf 88888689985699999759
No 4
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=1.00 E-value=1 Score=487.86 Aligned_cols=309 Identities=30% Similarity=0.510 Sum_probs=268.9
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCC---CCCCCHHHHHHHHHHHHHH--CCCCCCCHHHHHHHH
Q ss_conf 68855313899622589999995489899999952347656---8985059999999999997--089998938999999
Q 001770 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC---CGKDWCLMCELEQHVMMLR--ESAGPLSPGRILSHM 549 (1015)
Q Consensus 475 ~gp~GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~~~~~---~~~~~~l~~qL~kL~~~L~--ss~~~isP~~ll~~L 549 (1015)
+|++||.|+||||||||+||+|+++|+|+++++...+.... .....++.++|+.|+..|+ .....++|..|+..+
T Consensus 7 ~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~p~~~~~~l 86 (348)
T 3nhe_A 7 QGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKTQI 86 (348)
T ss_dssp CSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSSCCTTHHHHHHHHHHHHHHTTCCTTCEECCHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 99977875883479889999996679999998524466761468873118999999999999717898724899999999
Q ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC------------------CCCCCCCCCCCCEEEEEEE
Q ss_conf 8401236999867599999999999999997412999887976------------------4445301023453887799
Q 001770 550 RSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPR------------------LQETTFIQHTFGGRLWSKV 611 (1015)
Q Consensus 550 ~~~~~~F~~g~QQDA~EFL~~LLd~Le~e~l~~~~~~~~~~~~------------------~~e~s~I~~lF~G~l~~~i 611 (1015)
+...+.|..++||||+|||.+||+.|++++............. ....++|.++|+|.+.+.+
T Consensus 87 ~~~~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~ 166 (348)
T 3nhe_A 87 QRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSL 166 (348)
T ss_dssp HHHSGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHHHCEEEEEEE
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEE
T ss_conf 98606407987447999999999999998753046788775222468822778999999875069845555124999899
Q ss_pred EECCCCCCCCCEEEEEEEEEECCCC---CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEE
Q ss_conf 9667898431000013455402366---3558999973179976889874224655532100033333026953899998
Q 001770 612 KCLRCSHESERYENIMDLTLEIYGW---VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLK 688 (1015)
Q Consensus 612 kC~~Cg~~S~~~E~f~~LsL~I~~~---~~sLed~L~~f~~~E~Ldg~nky~C~~Ck~k~~A~K~~~I~slP~iLiIqLk 688 (1015)
+|..|++.+.+.++|++|+|+|+.. ..+|++||+.|+..|.++|+|+|.|++|+.++.+.|+..|.++|+||+|||+
T Consensus 167 ~C~~C~~~s~~~e~f~~LsL~i~~~~~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL~i~lk 246 (348)
T 3nhe_A 167 TCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLK 246 (348)
T ss_dssp EETTTCCEEEEEEEESSEEECCCSSCSSCEEHHHHHHHHHSCEEECGGGCCEETTTTEECCEEEEEEEEECCSEEEEEEC
T ss_pred ECCCCCCEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHCCCEEECCCCCEECCCCCCCCCEEEEEEEECCCCEEEEEEE
T ss_conf 94899988644446547764279855677789999987468057168885678888885648999881329865799987
Q ss_pred EEECCC--CCCCCCEEECC-CCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCEEEEEECC-CCCEEEEECCCEE
Q ss_conf 310242--23254068678-7678777547899999832599999997379999997099999979-9969998099112
Q 001770 689 RFQEGR--YGKINKCITFP-EMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM-QGTWFRIDDTQVH 764 (1015)
Q Consensus 689 RF~~~~--~~Ki~~~V~FP-~~LDLs~yl~~~~~~~~~YeL~AVIvH~G~~~S~~sGHYvayVK~~-dgkW~~FNDs~Vt 764 (1015)
||.... ..|+...|.|| ..|||.+|+..... ...|+|+|||+|.|. +.+|||+||+|.. +++||+|||+.|+
T Consensus 247 Rf~~~~~~~~K~~~~v~fp~~~ldl~~~~~~~~~-~~~Y~L~avv~H~G~---~~~GHY~~~~~~~~~~~W~~~nD~~V~ 322 (348)
T 3nhe_A 247 RFSESRIRTSKLTTFVNFPLRDLDLREFASENTN-HAVYNLYAVSNHSGT---TMGGHYTAYCRSPGTGEWHTFNDSSVT 322 (348)
T ss_dssp CBCCCSSCCCBCCCCEECCSSCEECGGGBCTTCC-CCEEEEEEEEEEEEC---SSCEEEEEEEECTTTCCEEEEETTEEE
T ss_pred CCCCCCCCEEECCCCEECCCCCCCHHHHCCCCCC-CCCEEEEEEEECCCC---CCCCCCEEEECCCCCCCEEEEECCCCE
T ss_conf 5345677414568623034775877660678889-986799999970489---999643888816998937998389806
Q ss_pred EECCCCCCCCCCEEEEEEECCCC
Q ss_conf 41866456797389999983999
Q 001770 765 PVPMSQVMSEGAYMLFYMRSCPR 787 (1015)
Q Consensus 765 ~vs~eeV~s~~AYILfY~R~s~~ 787 (1015)
+++.++|....||||||+|.++.
T Consensus 323 ~v~~~~v~~~~aY~LfY~r~~~~ 345 (348)
T 3nhe_A 323 PMSSSQVRTSDAYLLFYELASPP 345 (348)
T ss_dssp EECGGGTCCTTEEEEEEEECC--
T ss_pred ECCHHHCCCCCCEEEEEEECCCC
T ss_conf 99888857898369999964877
No 5
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=1.00 E-value=1 Score=487.72 Aligned_cols=308 Identities=31% Similarity=0.491 Sum_probs=265.3
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCC--CCCCCCHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHH
Q ss_conf 6885531389962258999999548989999995234765--68985059999999999997089--9989389999998
Q 001770 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSA--CCGKDWCLMCELEQHVMMLRESA--GPLSPGRILSHMR 550 (1015)
Q Consensus 475 ~gp~GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~~~~--~~~~~~~l~~qL~kL~~~L~ss~--~~isP~~ll~~L~ 550 (1015)
+|++||.|+||||||||+||+|+++|+|+++++....... ......++.++|+.|+..|+... ..++|..|+..++
T Consensus 1 TG~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~v~p~~~~~~l~ 80 (355)
T 3i3t_A 1 SGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAVFQ 80 (355)
T ss_dssp --CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC------CHHHHHHHHHHHHTSSCSSCCCBCCHHHHHHHH
T ss_pred CCCCCCEECCCCHHHHHHHHHHHCCHHHHHHHHHCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 99747588982669899999986789999999725488756789952699999999999984589887445899999999
Q ss_pred HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC------------------C---------------CCCCCC
Q ss_conf 4012369998675999999999999999974129998879------------------7---------------644453
Q 001770 551 SISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVD------------------P---------------RLQETT 597 (1015)
Q Consensus 551 ~~~~~F~~g~QQDA~EFL~~LLd~Le~e~l~~~~~~~~~~------------------~---------------~~~e~s 597 (1015)
...+.|..++||||+|||.+|||.|++++........... + .....+
T Consensus 81 ~~~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 160 (355)
T 3i3t_A 81 KYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDS 160 (355)
T ss_dssp HHCGGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHHCCS
T ss_pred HHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 73842289876678999999999999997654137875235676667644443223577788788999999985231698
Q ss_pred CCCCCCCEEEEEEEEECCCCCCCCCEEEEEEEEEECCCC-----CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 010234538877999667898431000013455402366-----355899997317997688987422465553210003
Q 001770 598 FIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGW-----VESLEDALTQFTSPEDLDGENMYKCARCATYVRARK 672 (1015)
Q Consensus 598 ~I~~lF~G~l~~~ikC~~Cg~~S~~~E~f~~LsL~I~~~-----~~sLed~L~~f~~~E~Ldg~nky~C~~Ck~k~~A~K 672 (1015)
+|.++|+|.+.+.++|..|++.+.+.++|++|+|+|+.. ..+|++||+.|+..|.++|+|+|+|++|+.++.+.|
T Consensus 161 ~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~~~~~sl~~~L~~~~~~e~l~~~n~~~C~~C~~~~~a~k 240 (355)
T 3i3t_A 161 KIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTK 240 (355)
T ss_dssp HHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC-------CBHHHHHHHHHCCEEECGGGCCCCSSSCCCCCEEE
T ss_pred CCCCCCCEEEEEEEEECCCCCCCEEECCCEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEECCCCCCCCCEEE
T ss_conf 15453357999558938999984022223465256786444567658999999857835458999855988788662379
Q ss_pred EEEEECCCCEEEEEEEEEECC--CCCCCCCEEECC-CCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCEEEEEE
Q ss_conf 333302695389999831024--223254068678-76787775478999998325999999973799999970999999
Q 001770 673 QLSIHEAPNILTIVLKRFQEG--RYGKINKCITFP-EMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIK 749 (1015)
Q Consensus 673 ~~~I~slP~iLiIqLkRF~~~--~~~Ki~~~V~FP-~~LDLs~yl~~~~~~~~~YeL~AVIvH~G~~~S~~sGHYvayVK 749 (1015)
+..|.++|+||+|||+||... ...|+...|.|| +.|||.+|+.... +...|+|+|||+|.|. +++|||+||+|
T Consensus 241 ~~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~~~~~~~-~~~~Y~L~avv~H~G~---~~~GHY~~~~~ 316 (355)
T 3i3t_A 241 KLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKA-GSPVYQLYALCNHSGS---VHYGHYTALCR 316 (355)
T ss_dssp EEEEEECCSEEEEEECCEECCSSCCEECCCCCBCCSSCEECGGGBC-----CCEEEEEEEEEEEEE---TTEEEEEEEEE
T ss_pred EEECCCCCHHEEEEHHHEECCCCCCEECCCCEECCCCCCCCHHHCCCCC-CCCCEEEEEEEEECCC---CCCCEEEEEEE
T ss_conf 9881139813099760200378980478861607765467302115899-9964599999882678---99980799997
Q ss_pred CCCCCEEEEECCCEEEECCCCCCCCCCEEEEEEECCCC
Q ss_conf 79996999809911241866456797389999983999
Q 001770 750 DMQGTWFRIDDTQVHPVPMSQVMSEGAYMLFYMRSCPR 787 (1015)
Q Consensus 750 ~~dgkW~~FNDs~Vt~vs~eeV~s~~AYILfY~R~s~~ 787 (1015)
. +++||+|||+.|+++++++|....||||||+|++.-
T Consensus 317 ~-~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~~~~ 353 (355)
T 3i3t_A 317 C-QTGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQEP 353 (355)
T ss_dssp E-TTEEEEEETTEEEEECHHHHHTSCCSEEEEEEC---
T ss_pred C-CCEEEEECCCCCEECCHHHCCCCCCEEEEEEECCCC
T ss_conf 2-992899819871798899907898679999960688
No 6
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=1.00 E-value=1 Score=486.72 Aligned_cols=307 Identities=25% Similarity=0.326 Sum_probs=260.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCC--C-CCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 688553138996225899999954898999999523476--5-6898505999999999999708999893899999984
Q 001770 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSS--A-CCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRS 551 (1015)
Q Consensus 475 ~gp~GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~~~--~-~~~~~~~l~~qL~kL~~~L~ss~~~isP~~ll~~L~~ 551 (1015)
..++||.|+|||||||||||+|+++|+|+++++...... . ......+++++|+.||..|+.....+.|..|+..++.
T Consensus 12 ~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~v~P~~~~~~l~~ 91 (404)
T 2ayn_A 12 ELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSSSIPPIILLQFLHM 91 (404)
T ss_dssp CCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHHCSEECCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 99988654770439899999987689999999964510134788885438999999999998638983886999999988
Q ss_pred CCCCCCC------CCCCCHHHHHHHHHHHHHHHHHHHCCCCCC--------CCCCCCCCCCCCCCCCEEEEEEEEECCCC
Q ss_conf 0123699------986759999999999999999741299988--------79764445301023453887799966789
Q 001770 552 ISCQIGD------GSQEDAHEFLRLLVASMQSICLERHGGESK--------VDPRLQETTFIQHTFGGRLWSKVKCLRCS 617 (1015)
Q Consensus 552 ~~~~F~~------g~QQDA~EFL~~LLd~Le~e~l~~~~~~~~--------~~~~~~e~s~I~~lF~G~l~~~ikC~~Cg 617 (1015)
.++.|.+ +.||||+|||++||+.|+.++......... ........++|.++|+|.+.+.++|..|+
T Consensus 92 ~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~i~~~F~G~l~s~i~C~~C~ 171 (404)
T 2ayn_A 92 AFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMKCTESE 171 (404)
T ss_dssp HCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC------------------CCHHHHHTCEEEEEEEEESSSC
T ss_pred HCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHCCEEEEEEEEECCCC
T ss_conf 57002023567886654899999999999998744356775221001221000001137602451567999999825789
Q ss_pred CCC--CCEEEEEEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEEECC--
Q ss_conf 843--1000013455402366355899997317997688987422465553210003333302695389999831024--
Q 001770 618 HES--ERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEG-- 693 (1015)
Q Consensus 618 ~~S--~~~E~f~~LsL~I~~~~~sLed~L~~f~~~E~Ldg~nky~C~~Ck~k~~A~K~~~I~slP~iLiIqLkRF~~~-- 693 (1015)
.++ .+.|+|++|+|+|+....+|++||+.|+. |.++ |+|++|+....+.|+..|.++|+||+|||+||.+.
T Consensus 172 ~~s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~-e~l~----~~c~~c~~~~~~~k~~~i~~lP~vL~i~LkRF~~~~~ 246 (404)
T 2ayn_A 172 EEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQ-EEIT----KQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEK 246 (404)
T ss_dssp CCCCBCCEEEESSEEEECSSSCCBHHHHHHHTTE-ECCC----CEETTTTEECCEEEEEEEEECCSSEEEEEECBCCCCS
T ss_pred CCCCCEEECCCCEEEEECCCCCCCHHHHHHHHCC-CCEE----ECCHHHCCCCCEEEEEEHHHCCCCEEEEEEEEEEECC
T ss_conf 8168524225746876569985429999987544-0103----6252009830155553172199716999998898246
Q ss_pred --CCCCCCCEEECCCCCCCCCCCCCC-------------------------------------------------CCCCC
Q ss_conf --223254068678767877754789-------------------------------------------------99998
Q 001770 694 --RYGKINKCITFPEMLDMMPFMTGT-------------------------------------------------GDTPP 722 (1015)
Q Consensus 694 --~~~Ki~~~V~FP~~LDLs~yl~~~-------------------------------------------------~~~~~ 722 (1015)
...|++..|.||..|||.+|+... .....
T Consensus 247 ~~~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 326 (404)
T 2ayn_A 247 ESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCG 326 (404)
T ss_dssp SSSCCBCCCCCBCCSEEECGGGBCHHHHHHTTTTTGGGTCTTC----------------------CCCCCSCTTTTCCCS
T ss_pred CCCEECCCCEECCCCEEEHHHHCCHHHHHHCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 68310017446468256776744855541020135677655315401333110335555553334555554555768885
Q ss_pred CEEEEEEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCEEEECCCCCCCCC-------CEEEEEEECCCCC
Q ss_conf 32599999997379999997099999979996999809911241866456797-------3899999839999
Q 001770 723 LYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQVMSEG-------AYMLFYMRSCPRP 788 (1015)
Q Consensus 723 ~YeL~AVIvH~G~~~S~~sGHYvayVK~~dgkW~~FNDs~Vt~vs~eeV~s~~-------AYILfY~R~s~~~ 788 (1015)
.|+|+|||+|.|. ++++|||+||||..+++||+|||+.|+++++++|+... ||||||+|++...
T Consensus 327 ~Y~L~avv~H~G~--s~~~GHY~a~v~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~r~~~~~ 397 (404)
T 2ayn_A 327 YYDLQAVLTHQGR--SSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGPRRVEI 397 (404)
T ss_dssp EEEEEEEEEEESS--STTSSEEEEEEEEETTEEEEEBTTBCCCBCHHHHGGGGSSSSSCEEEEEEEECC----
T ss_pred EEEEEEEEEECCC--CCCCCCEEEEEECCCCEEEEEECCCCEECCHHHHHHHHCCCCCCEEEEEEEEECCCCC
T ss_conf 3999999995489--9999886999989999289960634566679999763079977628999998347777
No 7
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=1.00 E-value=1 Score=479.49 Aligned_cols=288 Identities=24% Similarity=0.321 Sum_probs=255.0
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCC-------CCHHHHHHHHHHHHHHCCC-CCCCHHHHH
Q ss_conf 68855313899622589999995489899999952347656898-------5059999999999997089-998938999
Q 001770 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGK-------DWCLMCELEQHVMMLRESA-GPLSPGRIL 546 (1015)
Q Consensus 475 ~gp~GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~~~~~~~~-------~~~l~~qL~kL~~~L~ss~-~~isP~~ll 546 (1015)
.+|+||.|+|||||||||||+|+++|+|+++++........... ..+++++|+.||..|+... ..+.|..|+
T Consensus 22 ~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~v~p~~~~ 101 (415)
T 1vjv_A 22 QLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLPVVLL 101 (415)
T ss_dssp CCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECCHHHH
T ss_pred CCCCCCEECCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 89888773885139999999997479999999712654466776433444113899999999999860799843779999
Q ss_pred HHHHHCCCCCC-------CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCC
Q ss_conf 99984012369-------99867599999999999999997412999887976444530102345388779996678984
Q 001770 547 SHMRSISCQIG-------DGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHE 619 (1015)
Q Consensus 547 ~~L~~~~~~F~-------~g~QQDA~EFL~~LLd~Le~e~l~~~~~~~~~~~~~~e~s~I~~lF~G~l~~~ikC~~Cg~~ 619 (1015)
..++...+.|. .+.||||+|||.+||+.|+.++.. ++|.++|+ .+.+.++|..|+..
T Consensus 102 ~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~---------------~~i~~~F~-~~~~~~~C~~C~~~ 165 (415)
T 1vjv_A 102 NTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD---------------KFSEDFRI-QFKTTIKDTANDND 165 (415)
T ss_dssp HHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH---------------HHHTTTCE-EEEEEEEETTEEEE
T ss_pred HHHHHHCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC---------------CHHHHHHH-HHEEEEEECCCCCC
T ss_conf 999875850210466777766668999999999999987343---------------46999998-61179997799987
Q ss_pred C--CCEEEEEEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEEECCC---
Q ss_conf 3--10000134554023663558999973179976889874224655532100033333026953899998310242---
Q 001770 620 S--ERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGR--- 694 (1015)
Q Consensus 620 S--~~~E~f~~LsL~I~~~~~sLed~L~~f~~~E~Ldg~nky~C~~Ck~k~~A~K~~~I~slP~iLiIqLkRF~~~~--- 694 (1015)
+ .+.|+|++|+|+|+....+|++||..|+. |.++ |+|+.|+....+.|+.+|.++|+||+|||+||.+..
T Consensus 166 s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~-e~i~----~~c~~c~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~ 240 (415)
T 1vjv_A 166 ITVKENESDSKLQCHISGTTNFMRNGLLEGLN-EKIE----KRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTN 240 (415)
T ss_dssp EEEECCCEESCEEECCCTTCCBHHHHHHHHHE-EC-------------CCCCEEEEEEEEECBSEEEEEECCEEEETTTT
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHHH-HHHH----HCCCCCCCCCCEEEEEECCCCCCEEEEEEEEEEEECCCC
T ss_conf 46313545436651256661238999998744-5553----146121786427888770269971599998899837888
Q ss_pred -CCCCCCEEECCCCCCCCCCCCCC--------------------------------------------------------
Q ss_conf -23254068678767877754789--------------------------------------------------------
Q 001770 695 -YGKINKCITFPEMLDMMPFMTGT-------------------------------------------------------- 717 (1015)
Q Consensus 695 -~~Ki~~~V~FP~~LDLs~yl~~~-------------------------------------------------------- 717 (1015)
..|++..|.||..|||.+|+...
T Consensus 241 ~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 320 (415)
T 1vjv_A 241 KKSKILRKVVFPFQLDVADMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESE 320 (415)
T ss_dssp EEEECCCCCBCCSEEECGGGBCHHHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHHH
T ss_pred CCHHHCCCCCCCCEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCHHHHHHH
T ss_conf 40431676479957676784283332221215799998753333456655310225554444345310222012567765
Q ss_pred -------------------CCCCCCEEEEEEEEEECCCCCCCCCCEEEEEEC--CCCCEEEEECCCEEEECCCCCCCCC-
Q ss_conf -------------------999983259999999737999999709999997--9996999809911241866456797-
Q 001770 718 -------------------GDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKD--MQGTWFRIDDTQVHPVPMSQVMSEG- 775 (1015)
Q Consensus 718 -------------------~~~~~~YeL~AVIvH~G~~~S~~sGHYvayVK~--~dgkW~~FNDs~Vt~vs~eeV~s~~- 775 (1015)
......|+|+|||+|.|. ++++|||+||||. .+++||+|||+.|+++++++|....
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~--s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~~~~v~~~~~ 398 (415)
T 1vjv_A 321 KDQWLEEYKKHFPPNLEKGENPSCVYNLIGVITHQGA--NSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAG 398 (415)
T ss_dssp HHHHHHHHHTTSCTTCCTTBCSSSEEEEEEEEEEESS--STTSSEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGGGC
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEECCC--CCCCCCEEEEEECCCCCCCEEEEECCCCEECCHHHHHHHCC
T ss_conf 5443332053334323235678843889999993589--99998879999478889948996788576727999764207
Q ss_pred ------CEEEEEEECC
Q ss_conf ------3899999839
Q 001770 776 ------AYMLFYMRSC 785 (1015)
Q Consensus 776 ------AYILfY~R~s 785 (1015)
||||||+|+.
T Consensus 399 g~~~~~aYiLfY~r~~ 414 (415)
T 1vjv_A 399 GGESDSALILMYKGFG 414 (415)
T ss_dssp CTTSCEEEEEEEEETT
T ss_pred CCCCCEEEEEEEEECC
T ss_conf 9876607999999547
No 8
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=1.00 E-value=1 Score=479.17 Aligned_cols=307 Identities=28% Similarity=0.515 Sum_probs=262.0
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCC--CCCCCHHHHHHHHHHHHHHCCC----------CCCCH
Q ss_conf 68855313899622589999995489899999952347656--8985059999999999997089----------99893
Q 001770 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC--CGKDWCLMCELEQHVMMLRESA----------GPLSP 542 (1015)
Q Consensus 475 ~gp~GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~~~~~--~~~~~~l~~qL~kL~~~L~ss~----------~~isP 542 (1015)
+|++||.|+|||||||||||+|+++|+|+++++...+...+ ..+..++.++|.+++..|+... ..+.|
T Consensus 139 ~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~ 218 (476)
T 3mhs_A 139 DGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQASSSSTSTNRQ 218 (476)
T ss_dssp TCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCTTTCHHHHHHHHHHHHHSCCCC--------CCCSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 89978770884679989999986789999998745035544578864105899999999996120333345666556575
Q ss_pred HHHHHHH---HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCCCCCCCCCCCEEEEEEEEECCCC
Q ss_conf 8999999---840123699986759999999999999999741299988--79764445301023453887799966789
Q 001770 543 GRILSHM---RSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESK--VDPRLQETTFIQHTFGGRLWSKVKCLRCS 617 (1015)
Q Consensus 543 ~~ll~~L---~~~~~~F~~g~QQDA~EFL~~LLd~Le~e~l~~~~~~~~--~~~~~~e~s~I~~lF~G~l~~~ikC~~Cg 617 (1015)
..+...+ ++.++.|..++||||+|||.+||+.|++++......... ........++|.++|+|.+.++++|..|+
T Consensus 219 ~~~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~G~l~~~~~C~~C~ 298 (476)
T 3mhs_A 219 TGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQ 298 (476)
T ss_dssp HHHHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC-------CCCSCCSHHHHHSCEEEEEEEECTTTC
T ss_pred CHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCEEEEEEEEECCCC
T ss_conf 00899999988745123888775999999999999999976415665334544556688800211325999889989999
Q ss_pred CCC-CCEEEEEEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEEECC---
Q ss_conf 843-1000013455402366355899997317997688987422465553210003333302695389999831024---
Q 001770 618 HES-ERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEG--- 693 (1015)
Q Consensus 618 ~~S-~~~E~f~~LsL~I~~~~~sLed~L~~f~~~E~Ldg~nky~C~~Ck~k~~A~K~~~I~slP~iLiIqLkRF~~~--- 693 (1015)
.++ .+.++|++|+|+|++ ..+|+++|+.|+..|.+++.+ |+|++|+.++.+.|+..|.++|+||+|||+||...
T Consensus 299 ~~s~~~~e~f~~LsL~i~~-~~sl~~~L~~~~~~E~l~~~~-~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~ 376 (476)
T 3mhs_A 299 NNSKTTIDPFLDLSLDIKD-KKKLYECLDSFHKKEQLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNG 376 (476)
T ss_dssp CCCEEEEEEESCEEECCTT-CCBHHHHHHHHHCCEECSSCC-CEETTTTEECCCEEEEEEEEBCSEEEEEECCEEECTTS
T ss_pred CEECCCCCCHHHHCCCHHH-HHHHHHHHHHHCCHHHCCCCC-CCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCC
T ss_conf 8517865666661320124-668999999863842214778-76886688565789987014971139984402154899
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCC---------CCCCEEEEEEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCEE
Q ss_conf 22325406867876787775478999---------998325999999973799999970999999799969998099112
Q 001770 694 RYGKINKCITFPEMLDMMPFMTGTGD---------TPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVH 764 (1015)
Q Consensus 694 ~~~Ki~~~V~FP~~LDLs~yl~~~~~---------~~~~YeL~AVIvH~G~~~S~~sGHYvayVK~~dgkW~~FNDs~Vt 764 (1015)
...|++..|.||..|||.+|+..... ....|+|+|||+|.|. +++|||+||+|..+++||+|||+.|+
T Consensus 377 ~~~K~~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avv~H~G~---~~~GHY~a~vr~~~~~W~~fnD~~V~ 453 (476)
T 3mhs_A 377 SNRKLDDFIEFPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGT---VNEGHYIAFCKISGGQWFKFNDSMVS 453 (476)
T ss_dssp CEEECCCCCBCCSEEECGGGBSCCBCCC--CCCBCCCEEEEEEEEEEEEEC---SSSEEEEEEEECTTSCEEEEETTEEE
T ss_pred CEEECCEEECCCCEEECHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEECCC---CCCCCEEEEEECCCCCEEEEECCCEE
T ss_conf 717898787389700034323753234322346789973899999996899---98875499998898918999498158
Q ss_pred EECCCCCCCCCCEEEEEEECCC
Q ss_conf 4186645679738999998399
Q 001770 765 PVPMSQVMSEGAYMLFYMRSCP 786 (1015)
Q Consensus 765 ~vs~eeV~s~~AYILfY~R~s~ 786 (1015)
++++++|+...||||||+|++.
T Consensus 454 ~v~~~~v~~~~aYiLfY~r~~~ 475 (476)
T 3mhs_A 454 SISQEEVLKEQAYLLFYTIRQV 475 (476)
T ss_dssp EECHHHHTTSCEEEEEEEEEEE
T ss_pred ECCHHHHCCCCCEEEEEEEECC
T ss_conf 9998995669867999998438
No 9
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=1.00 E-value=1 Score=474.43 Aligned_cols=294 Identities=26% Similarity=0.419 Sum_probs=256.2
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
Q ss_conf 86885531389962258999999548989999995234765689850599999999999970899989389999998401
Q 001770 474 LLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSIS 553 (1015)
Q Consensus 474 ~~gp~GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~~~~~~~~~~~l~~qL~kL~~~L~ss~~~isP~~ll~~L~~~~ 553 (1015)
.++++||.|+||||||||+||+|+++|+|+++++.... .......++.++|+.||..|+.+..++.|..|+..++ .
T Consensus 172 ~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~--~~~~~~~~~~~~l~~lf~~l~~~~~~~~~~~l~~~~~--~ 247 (522)
T 2f1z_A 172 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPT--EGDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFG--W 247 (522)
T ss_dssp TTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCC--CSSCTTTCHHHHHHHHHHHHHHCSSCBCCTTHHHHTC--C
T ss_pred CCCCCCEECCCCCHHHHHHHHHHHCCHHHHHHHHHCCC--CCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHCC--C
T ss_conf 67854411386318888999998612999999960665--6776565289999999999863798557678886418--7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEEEEEEEC
Q ss_conf 23699986759999999999999999741299988797644453010234538877999667898431000013455402
Q 001770 554 CQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEI 633 (1015)
Q Consensus 554 ~~F~~g~QQDA~EFL~~LLd~Le~e~l~~~~~~~~~~~~~~e~s~I~~lF~G~l~~~ikC~~Cg~~S~~~E~f~~LsL~I 633 (1015)
+.|..+.||||+|||++||+.|+.++... ...++|.++|+|++.+.++|..|++.+.+.|+|++|+|+|
T Consensus 248 ~~~~~~~QqDa~Efl~~LLd~L~~~l~~~-----------~~~s~i~~lF~G~~~s~i~C~~C~~~s~~~e~f~~LsL~i 316 (522)
T 2f1z_A 248 ETLDSFMQHDVQELCRVLLDNVENKMKGT-----------CVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSI 316 (522)
T ss_dssp CTTTSSTTSCHHHHHHHHHHHHHHHHTTS-----------TTTTHHHHHHCEEEEEEECCSSSCCCCCEEEEESCEEECC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCC-----------CCCCCHHHHEEEEEEEEEECCCCCCEEEEEEEEEEEEEEE
T ss_conf 65787626469999999999998641588-----------6566021313379999887278995553663207898884
Q ss_pred CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEEECC----CCCCCCCEEECCCCCC
Q ss_conf 366355899997317997688987422465553210003333302695389999831024----2232540686787678
Q 001770 634 YGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEG----RYGKINKCITFPEMLD 709 (1015)
Q Consensus 634 ~~~~~sLed~L~~f~~~E~Ldg~nky~C~~Ck~k~~A~K~~~I~slP~iLiIqLkRF~~~----~~~Ki~~~V~FP~~LD 709 (1015)
++ ..+|++||..|+..|.++|+|+|.|+.|+ ++.|.|+..|.++|+||+|||+||.+. ...|+++.|.||..||
T Consensus 317 ~~-~~~l~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp~~Ld 394 (522)
T 2f1z_A 317 KG-KKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLP 394 (522)
T ss_dssp TT-CCBHHHHHHHHTCEEEECTTSCBCCGGGC-SBCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCCSEEE
T ss_pred CC-CCCCHHHHHHHHCEEECCCCCEEECCCCC-CCCEEEEEEEECCCCEEEEEEEEEEECCCCCCCEECCCEEECCCEEC
T ss_conf 78-64406799874050222776204047677-65367999934199638999874788166785267682796788134
Q ss_pred CCCCCCCCC-CCCCCEEEEEEEEEECCCCCCCCCCEEEEEEC-CCCCEEEEECCCEEEECCCCCCC--------------
Q ss_conf 777547899-99983259999999737999999709999997-99969998099112418664567--------------
Q 001770 710 MMPFMTGTG-DTPPLYMLYSVVVHLDTQNASFSGHYVSYIKD-MQGTWFRIDDTQVHPVPMSQVMS-------------- 773 (1015)
Q Consensus 710 Ls~yl~~~~-~~~~~YeL~AVIvH~G~~~S~~sGHYvayVK~-~dgkW~~FNDs~Vt~vs~eeV~s-------------- 773 (1015)
|.+|+.... ..+..|+|+|||+|.|. +++|||+||+|. .+++||+|||+.|++++.++|+.
T Consensus 395 l~~~~~~~~~~~~~~Y~L~avv~H~G~---~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~ 471 (522)
T 2f1z_A 395 LDEFLQKTDPKDPANYILHAVLVHSGD---NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRH 471 (522)
T ss_dssp CGGGBSSCCTTSCCEEEEEEEEEEECS---SSCSEEEEEECTTSSSCCEEEETTEEEECCHHHHSTTSSCCC--------
T ss_pred CHHHHCCCCCCCCCEEEEEEEEEECCC---CCCCEEEEEEECCCCCCEEEEECCEEEECCHHHHHHHHCCCCCCCCCCCC
T ss_conf 435405446899837999999996456---99866899994389998999978324899899998863388754334576
Q ss_pred -CCCEEEEEEECCCC
Q ss_conf -97389999983999
Q 001770 774 -EGAYMLFYMRSCPR 787 (1015)
Q Consensus 774 -~~AYILfY~R~s~~ 787 (1015)
..||||||+|.+..
T Consensus 472 ~~~aYiLfY~r~~~~ 486 (522)
T 2f1z_A 472 CTNAYMLVYIRESKL 486 (522)
T ss_dssp CEEEEEEEEEETTSH
T ss_pred CCCEEEEEEEECCCH
T ss_conf 893499999988825
No 10
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=1.00 E-value=1 Score=473.96 Aligned_cols=293 Identities=26% Similarity=0.423 Sum_probs=256.0
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCC
Q ss_conf 68855313899622589999995489899999952347656898505999999999999708999893899999984012
Q 001770 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISC 554 (1015)
Q Consensus 475 ~gp~GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~~~~~~~~~~~l~~qL~kL~~~L~ss~~~isP~~ll~~L~~~~~ 554 (1015)
+|++||.|+||||||||+||+|+++|+|+++++..... ......++.++|+.||..|+.+..++.|..|+..++ ++
T Consensus 4 ~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~--~~~~~~~~~~~l~~lf~~l~~~~~~~~~~~l~~~~~--~~ 79 (353)
T 1nb8_A 4 TGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE--GDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFG--WE 79 (353)
T ss_dssp SSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCT--TSCTTTCHHHHHHHHHHHHHHCSSCBCCHHHHHHHT--CC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCC--CCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCC--CC
T ss_conf 89987564745449899999997779999999837877--776544099999999998860588778779986418--87
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEEEEEEECC
Q ss_conf 36999867599999999999999997412999887976444530102345388779996678984310000134554023
Q 001770 555 QIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIY 634 (1015)
Q Consensus 555 ~F~~g~QQDA~EFL~~LLd~Le~e~l~~~~~~~~~~~~~~e~s~I~~lF~G~l~~~ikC~~Cg~~S~~~E~f~~LsL~I~ 634 (1015)
.|..+.||||+|||.+||+.|+.++... ...++|.++|+|.+.+.++|..|++.+.+.++|++|+|+|+
T Consensus 80 ~~~~~~QqDA~EFl~~LLd~L~~~~~~~-----------~~~s~i~~~F~g~~~~~i~C~~C~~~s~~~e~f~~LsL~i~ 148 (353)
T 1nb8_A 80 TLDSFMQHDVQELCRVLLDNVENKMKGT-----------CVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIK 148 (353)
T ss_dssp BTTTTTTSCHHHHHHHHHHHHHHHTTTS-----------TTTTHHHHHHCEEEEEEEEESSSCCEEEEEEEESCEEECCT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCC-----------CCCCHHHHHCEEEEEEEEEECCCCCEECEEEEEEEEEEEEC
T ss_conf 7786532639999999999999884488-----------75551235030589999992568970022223279988979
Q ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEEECC----CCCCCCCEEECCCCCCC
Q ss_conf 66355899997317997688987422465553210003333302695389999831024----22325406867876787
Q 001770 635 GWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEG----RYGKINKCITFPEMLDM 710 (1015)
Q Consensus 635 ~~~~sLed~L~~f~~~E~Ldg~nky~C~~Ck~k~~A~K~~~I~slP~iLiIqLkRF~~~----~~~Ki~~~V~FP~~LDL 710 (1015)
+ ..+|.+||..|+.+|.++|+|+|.|+.|+ ++.|.|+..|.++|+||+|||+||.+. ...|+++.|.||..|||
T Consensus 149 ~-~~~l~~~L~~~~~~E~l~~~~~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp~~Ldl 226 (353)
T 1nb8_A 149 G-KKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPL 226 (353)
T ss_dssp T-CSBHHHHHHHHTCCEEECTTTCEECGGGC-EECEEEEEEESCCCSEEEEEECCCC--------CCCCCCCBCCSEEEC
T ss_pred C-CCCHHHHHHHHHCCCCCCCCCCCCCCCCC-CEEEEEEEEHHCCCCCEEEEEECEEEECCCCCEEECCCEEECCCEEEH
T ss_conf 9-76457799985173424787531477675-175689888400997259998367984235950755828977976652
Q ss_pred CCCCCCCC-CCCCCEEEEEEEEEECCCCCCCCCCEEEEEEC-CCCCEEEEECCCEEEECCCCCCC---------------
Q ss_conf 77547899-99983259999999737999999709999997-99969998099112418664567---------------
Q 001770 711 MPFMTGTG-DTPPLYMLYSVVVHLDTQNASFSGHYVSYIKD-MQGTWFRIDDTQVHPVPMSQVMS--------------- 773 (1015)
Q Consensus 711 s~yl~~~~-~~~~~YeL~AVIvH~G~~~S~~sGHYvayVK~-~dgkW~~FNDs~Vt~vs~eeV~s--------------- 773 (1015)
.+|+.... ..+..|+|+|||+|.|. +++|||+||+|. .+++||+|||+.|++++.++|+.
T Consensus 227 ~~~~~~~~~~~~~~Y~L~avv~H~G~---~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~gg~~~~~~~~~~ 303 (353)
T 1nb8_A 227 DEFLQKTDPKDPANYILHAVLVHSGD---NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHC 303 (353)
T ss_dssp GGGBSSCCTTSCCEEEEEEEEEEESS---TTCCCEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCC-------CC
T ss_pred HHHHCCCCCCCCCEEEEEEEEEEECC---CCCCEEEEEEECCCCCCEEEEECCCEEECCHHHHHHHHCCCCCCCCCCCCC
T ss_conf 35221337899815999999997478---988679999945999988999896028978899988723897654446768
Q ss_pred CCCEEEEEEECCCC
Q ss_conf 97389999983999
Q 001770 774 EGAYMLFYMRSCPR 787 (1015)
Q Consensus 774 ~~AYILfY~R~s~~ 787 (1015)
..||||||+|.+..
T Consensus 304 ~~aYiLfY~r~~~~ 317 (353)
T 1nb8_A 304 TNAYMLVYIRESKL 317 (353)
T ss_dssp EEEEEEEEEETTTH
T ss_pred CEEEEEEEEECCHH
T ss_conf 80799999988534
Done!