Your job contains 1 sequence.
>001771
MSDPAVVSQQGVVSLPLSVEQLISKIYTEQNKLPPDDGARRSLASLGEDAALDVLRTIAS
DKIKYSFSGYINYLVKKRNNNGSPLKRVCFSPSSPQQNRSPVTVTTVRLLNLPQGTDYVV
KQSPVADQQPRGSPMSSISHAMRHRASIPQYVALGELEFRKAFLILSYIGENSLEEVITA
DEIRGMRDLQMARFESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFKG
PYLNQTRTHLQRELGDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIAREGILVGLRCYH
FFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTV
SSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGF
ISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFY
NGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSR
NLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSG
ISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQV
SWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFD
GDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSN
AKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPED
LKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCFDDGVPEACMT
KWKGYYDQYRWEMKEAIDKCTVEREEAAELVIEKYKQILYGAAEFEQSTRTLEEIYNEAL
AIYNITYDLAASRRQVSYCSFAWRVAGSALRKFYARRQGDRSMLCSASVLREICG
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001771
(1015 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2052040 - symbol:AT2G19910 species:3702 "Arabi... 2320 1.1e-240 1
TAIR|locus:2052020 - symbol:AT2G19930 species:3702 "Arabi... 1536 4.3e-239 2
TAIR|locus:2052030 - symbol:AT2G19920 species:3702 "Arabi... 1343 1.1e-211 2
TAIR|locus:2006822 - symbol:RDR1 "AT1G14790" species:3702... 184 5.2e-18 4
TAIR|locus:2136068 - symbol:RDR2 "RNA-dependent RNA polym... 129 2.5e-16 5
DICTYBASE|DDB_G0291249 - symbol:rrpB "RNA-directed RNA po... 239 1.4e-15 1
DICTYBASE|DDB_G0289659 - symbol:rrpA "RNA-directed RNA po... 238 1.9e-15 1
POMBASE|SPAC6F12.09 - symbol:rdp1 "RNA-directed RNA polym... 145 1.9e-11 5
UNIPROTKB|G4NJ50 - symbol:MGG_02748 "RNA-dependent RNA po... 111 7.2e-11 4
ASPGD|ASPL0000040001 - symbol:rrpC species:162425 "Emeric... 203 8.2e-11 2
UNIPROTKB|Q8LHH9 - symbol:SHL2 "Probable RNA-dependent RN... 138 4.1e-10 3
TAIR|locus:2114633 - symbol:RDR6 "AT3G49500" species:3702... 127 1.8e-09 2
DICTYBASE|DDB_G0280963 - symbol:rrpC "RNA-directed RNA po... 193 2.0e-09 2
WB|WBGene00004509 - symbol:rrf-2 species:6239 "Caenorhabd... 132 1.3e-05 2
WB|WBGene00004510 - symbol:rrf-3 species:6239 "Caenorhabd... 134 0.00053 2
>TAIR|locus:2052040 [details] [associations]
symbol:AT2G19910 species:3702 "Arabidopsis thaliana"
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016441 "posttranscriptional gene silencing" evidence=ISS]
InterPro:IPR007855 Pfam:PF05183 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003723 GO:GO:0031047 EMBL:AC005169
GO:GO:0003968 KO:K11699 PANTHER:PTHR23079 IPI:IPI00534018
PIR:F84582 RefSeq:NP_179581.2 UniGene:At.52837 PaxDb:O82190
PRIDE:O82190 EnsemblPlants:AT2G19910.1 GeneID:816510
KEGG:ath:AT2G19910 TAIR:At2g19910 eggNOG:NOG279775
InParanoid:O82190 OMA:IFYSERA PhylomeDB:O82190
Genevestigator:O82190 Uniprot:O82190
Length = 992
Score = 2320 (821.7 bits), Expect = 1.1e-240, P = 1.1e-240
Identities = 474/874 (54%), Positives = 609/874 (69%)
Query: 148 IPQYVALGELEFRKAFLILSYIGENSL-EEVITADEIRGMRDLQMARFESEVWEKLGRKN 206
IP +ALGELEF+KAFL+LSYIG SL EEVI+ D+IR +DL M +E+ VW +LG++
Sbjct: 137 IPPLLALGELEFKKAFLLLSYIGGESLVEEVISGDQIRKWKDLPMVSYEAAVWNRLGQRY 196
Query: 207 ISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGDDNILLVKFDE 266
S ++RR L+ DSG TH Y CH++T G+ FKG L T THL + LGDDN+L VKFD+
Sbjct: 197 CSPKERRRPLEGDSGMTHYYQCHVATDGSYKFKGHLLENTGTHLHKVLGDDNVLTVKFDK 256
Query: 267 ELGGHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFXXXXXXXXXXXPSTSPVKCYFV 326
LG ND YS Y IA+ GI+VGLR Y FFVF ST VKCYF+
Sbjct: 257 VLG---VETYCNDLYSTYKGIAKNGIMVGLRRYRFFVFKDGGKEEKKKDVSTKGVKCYFI 313
Query: 327 RMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSR 386
R +S+A IDM YI +GK++HEAR FMHV T+SS+ NYMSR SLILSKT LEVD +
Sbjct: 314 RTDSTASIDMQNPYIFAGKSMHEARMHFMHVNTLSSLPNYMSRFSLILSKTKTLEVDMTG 373
Query: 387 INIERIEDEPCRDKDG-NVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTE 445
I E+I+D C D+D +V+ K+G+ IH+DGTG+ISEDLA CP ++K K ++
Sbjct: 374 ITFEQIDDIHCHDQDDKDVLDKNGKPCIHSDGTGYISEDLARMCPVNIFKGKSMRSNN-- 431
Query: 446 RSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPS 505
I K L NF EPPLL+Q R+FYNG AVKGT L NKKLPP+T+Q+RPS
Sbjct: 432 --IQSKNL--NFEGQGPCGQ---EPPLLIQFRIFYNGYAVKGTFLTNKKLPPRTVQVRPS 484
Query: 506 MIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALD 565
MIKV DR LS+ TFNSLEVV TSN PRK LSRNL+ALLSYGGVP FFL+ILRN L+
Sbjct: 485 MIKVYEDRTLSNLSTFNSLEVVTTSNPPRKARLSRNLVALLSYGGVPNDFFLNILRNTLE 544
Query: 566 DARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQA 625
+++ +F ++R A K + NYG Y +A MIL GI LDEPYL+ RLS L+K E+ +L+A
Sbjct: 545 ESKTIFYSERAAFKAAINYGDDQY---TADMILVGIPLDEPYLKDRLSYLLKTERNALKA 601
Query: 626 GKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEKVLVYRNPGLHFGDIHVLKATY 685
G+ P+ ESYY+MGTVDPTG LK NE+C+IL GQ+S + VLVYRNPGLHFGDIHVLKATY
Sbjct: 602 GRFPIDESYYIMGTVDPTGELKENEICVILHSGQISGD-VLVYRNPGLHFGDIHVLKATY 660
Query: 686 VKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMST 745
VK LED+VG +K+A+FFP GPRSL DEIAGGDFDGDMYF+SRNP+LL+HFK SE W+S+
Sbjct: 661 VKALEDYVGNAKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHFKPSEPWVSS 720
Query: 746 SK--NLSANKRLIDXXXXXXXXXXXXXXXNTRFCPSNAKSLAADCWQAVMDRFLTLGDES 803
SK + ++ + RFC + +AADCW +MD FLTLGDES
Sbjct: 721 SKPSKIYCGRKPSELSEEELEEELFKMFLKARFCKRDVIGMAADCWLGIMDPFLTLGDES 780
Query: 804 AEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSV 863
A+EK K+N+L+LI+IYYDALDAPKK G KV++P DL+++ FP YM RD F STS+
Sbjct: 781 AKEKYERKKNILKLIDIYYDALDAPKK-GAKVDLPPDLEIKNFPHYMERDPKRDFRSTSI 839
Query: 864 LGTIYNTVKSYEAVDRSVTEIWKLPCFDDG-VPEACMTKWKGYYDQYRWEMKEAI-DKCT 921
LG I++TV S+ A + +EI KL F+D VP++ M K+ +Y+ YR EM +A+ +
Sbjct: 840 LGLIFDTVDSHNAEEPPPSEISKLWYFEDEPVPKSHMDKFTSWYENYRSEMSQAMMETDK 899
Query: 922 VEREEAAELVIEKYKQILYGAAEFEQSTRTLEEIYNEALAIYNITYDLAASRRQVSYCSF 981
V+R + VI++YKQ YGAA FE S ++LEE+Y +ALA+YN+ YD A + V+ C+F
Sbjct: 900 VKRNQLTNEVIQRYKQDFYGAAGFEDSNKSLEELYPQALALYNVVYDYAI-QEGVAKCTF 958
Query: 982 AWRVAGSALRKFYARRQGDRSMLCSASVLREICG 1015
AW VAG L KFY ++ D+S++ S SVL+++ G
Sbjct: 959 AWNVAGPVLCKFYLKKTKDKSVVASTSVLKKLLG 992
Score = 836 (299.3 bits), Expect = 1.9e-83, P = 1.9e-83
Identities = 200/444 (45%), Positives = 262/444 (59%)
Query: 7 VSQQGVVSLPLSVEQLISKIYTEQN-KLPPDDGARRSLASLGEDAALDVLRTIASDKIKY 65
VS + ++L SVE ++ KIY + N +LP RR L+S+ E+ AL+ LR + +
Sbjct: 9 VSPRSEIALLGSVETMLEKIYEKHNHRLPISVETRRKLSSISEELALETLRKVFNKPYLK 68
Query: 66 SFSGYINYLVKKRNN-NGSPLKRVCFSPS-SPQQNRSPVTVTTVRLLNLPQGTDYVVKQS 123
+ G I Y VK +GSP R+ SP SP Q SP T P Q
Sbjct: 69 TLDGLIMYFVKGTVTVDGSP--RL--SPGESPVQ--SPRT---------PAKKSCRASQD 113
Query: 124 PVADQQPRGSPMSSISHAMRHRASIPQYVALGELEFRKAFLILSYIGENSL-EEVITADE 182
D + SP IP +ALGELEF+KAFL+LSYIG SL EEVI+ D+
Sbjct: 114 VSLDLETP-SPKFMKREENGGSKYIPPLLALGELEFKKAFLLLSYIGGESLVEEVISGDQ 172
Query: 183 IRGMRDLQMARFESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPY 242
IR +DL M +E+ VW +LG++ S ++RR L+ DSG TH Y CH++T G+ FKG
Sbjct: 173 IRKWKDLPMVSYEAAVWNRLGQRYCSPKERRRPLEGDSGMTHYYQCHVATDGSYKFKGHL 232
Query: 243 LNQTRTHLQRELGDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIAREGILVGLRCYHFF 302
L T THL + LGDDN+L VKFD+ LG ND YS Y IA+ GI+VGLR Y FF
Sbjct: 233 LENTGTHLHKVLGDDNVLTVKFDKVLG---VETYCNDLYSTYKGIAKNGIMVGLRRYRFF 289
Query: 303 VFXXXXXXXXXXXPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSS 362
VF ST VKCYF+R +S+A IDM YI +GK++HEAR FMHV T+SS
Sbjct: 290 VFKDGGKEEKKKDVSTKGVKCYFIRTDSTASIDMQNPYIFAGKSMHEARMHFMHVNTLSS 349
Query: 363 VANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDG-NVVYKDGEALIHTDGTGFI 421
+ NYMSR SLILSKT LEVD + I E+I+D C D+D +V+ K+G+ IH+DGTG+I
Sbjct: 350 LPNYMSRFSLILSKTKTLEVDMTGITFEQIDDIHCHDQDDKDVLDKNGKPCIHSDGTGYI 409
Query: 422 SEDLALKCPTYVYKEKCTNDDSTE 445
SEDLA CP ++K K ++ +
Sbjct: 410 SEDLARMCPVNIFKGKSMRSNNIQ 433
>TAIR|locus:2052020 [details] [associations]
symbol:AT2G19930 species:3702 "Arabidopsis thaliana"
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016441 "posttranscriptional gene silencing" evidence=ISS]
[GO:0009410 "response to xenobiotic stimulus" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0009855 "determination of
bilateral symmetry" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0009944 "polarity specification of
adaxial/abaxial axis" evidence=RCA] [GO:0010014 "meristem
initiation" evidence=RCA] [GO:0010075 "regulation of meristem
growth" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016567 "protein
ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0048522 "positive regulation of cellular process"
evidence=RCA] [GO:0050826 "response to freezing" evidence=RCA]
InterPro:IPR007855 Pfam:PF05183 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003723 GO:GO:0031047 EMBL:AC005169
GO:GO:0003968 KO:K11699 PANTHER:PTHR23079 EMBL:AK229381
IPI:IPI00786210 PIR:H84582 RefSeq:NP_179583.3 UniGene:At.39772
EnsemblPlants:AT2G19930.1 GeneID:816512 KEGG:ath:AT2G19930
TAIR:At2g19930 HOGENOM:HOG000082682 OMA:LANYMAR
Genevestigator:O82188 Uniprot:O82188
Length = 977
Score = 1536 (545.8 bits), Expect = 4.3e-239, Sum P(2) = 4.3e-239
Identities = 319/557 (57%), Positives = 403/557 (72%)
Query: 464 ESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNS 523
E+ Y +PPLL+Q R+FY+G AVKGT LLNKKL P+T+Q+RPSMIKV D LS+ TFN+
Sbjct: 430 EACYQDPPLLIQFRMFYDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNA 489
Query: 524 LEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFN 583
LEVV TSN P++T LS+NL+ALLSYGG+P FFLDIL N L++++ +F NKR AL + N
Sbjct: 490 LEVVTTSNPPKRTKLSKNLVALLSYGGIPNEFFLDILLNTLEESKSIFYNKRAALNAALN 549
Query: 584 YGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPT 643
YG MD D +A+MIL GI LDEP+L++ LSIL+K EK L+AGKLPVTESYYLMGTVDPT
Sbjct: 550 YGEMD-DQNAAQMILVGIPLDEPHLKNYLSILLKTEKNDLKAGKLPVTESYYLMGTVDPT 608
Query: 644 GILKSNEVCIILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFP 703
G LK +EVC+IL+ GQ+S E VLVYRNPGLHFGDIH+LKATYVK LE++VG SK+A+FFP
Sbjct: 609 GALKEDEVCVILESGQISGE-VLVYRNPGLHFGDIHILKATYVKALEEYVGNSKFAVFFP 667
Query: 704 CNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMS-TSKNLSANKRLIDXXXXX 762
GPRSL DEIAGGDFDGDMYF+SRNPELL++FK SE W+S T + S + R
Sbjct: 668 QKGPRSLGDEIAGGDFDGDMYFISRNPELLENFKPSEPWVSLTPPSKSNSGRAPSQLSPE 727
Query: 763 XXXXXXXXXXNTR-FCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIY 821
T F SN +AAD W +MDRFL LGD+ AEEKA MK+ ML LI+IY
Sbjct: 728 ELEEELFEMFLTAGFHASNVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIY 787
Query: 822 YDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSV 881
YDALDAPKK G KV +P LK + FP YM RD+ F+STS+LG I++ VKS + S
Sbjct: 788 YDALDAPKK-GDKVYLPNKLKPDIFPHYMERDKK--FQSTSILGLIFDFVKSQTTEEPSP 844
Query: 882 T-EIWKLPCFDDG-VPEACMTKWKGYYDQYRWEMKEAIDKCTVEREEAAELVIEKYKQIL 939
+ EI KLPCF+D V E M K + +YD YR EM +A+ +++E+A VI++YKQ
Sbjct: 845 SSEISKLPCFEDEPVSEFHMQKCRLWYDNYRTEMTQAMK---TDKDESANEVIQRYKQEF 901
Query: 940 YGAAEFEQSTRTLEEIYNEALAIYNITYDLAASRRQVSYCSFAWRVAGSALRKFYA-RRQ 998
YGAA FE S ++LEE+Y +ALA+Y I YD A VS C F W+VAG L +FY ++
Sbjct: 902 YGAAGFEDSKKSLEELYPQALALYKIVYDYAI-HAGVSKCRFVWKVAGPVLCRFYLNKKM 960
Query: 999 GDRSMLCSASVLREICG 1015
++ ++C+ SVL+E+ G
Sbjct: 961 QEKCLVCAPSVLKELWG 977
Score = 792 (283.9 bits), Expect = 4.3e-239, Sum P(2) = 4.3e-239
Identities = 184/444 (41%), Positives = 260/444 (58%)
Query: 13 VSLPLSVEQLISKIYTEQNKLPPDDGARRSLASLGEDAALDVLRTIASDKIKYSFSGYIN 72
++L +E + IY + N P +D R+ L+S+ E+ +++R + S + ++ +
Sbjct: 10 IALSGRIETALENIYRKHNLTPINDETRQRLSSIPENLGFELVRKVFSLQAGLIYN-LDS 68
Query: 73 YLVKKRNNNGSPLKRVCFSP-SSPQQNRSPVTVTTVRLLNLPQGTDYVVKQSPVADQQPR 131
++V K N + V F+ P + SP R+L D +P
Sbjct: 69 FIVSKVN------QAVSFTGYPQPANSLSPSGRHVSRVLQEEMSVD---SDAP------- 112
Query: 132 GSPMSSISHAMRHRASIPQYVALGELEFRKAFLILSYIGENSLEEVITADEIRGMRDLQM 191
SP S S IPQ VALGELEF+K FL+LSYI + +VITADEIR +DL M
Sbjct: 113 -SPKSLKSEDKGGSLHIPQLVALGELEFKKVFLLLSYIPGQHVGQVITADEIRLWKDLPM 171
Query: 192 ARFESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFK------GPYLNQ 245
+E+ VW++LGR Q+DRRM L+WDSGKTH Y C+++ G+ TFK GP L
Sbjct: 172 VEYEAAVWDRLGRHYCPQKDRRM-LQWDSGKTHYYQCNVAPNGSYTFKVLSALQGPLLEH 230
Query: 246 TRTHLQRELGDDNILLVKFDEELGGHRSSNNWN-DSYSKYNEIAREGILVGLRCYHFFVF 304
T THL + LGDDN+L VKF + +SS+ ++ D Y Y IA+ GI++GLR Y FFVF
Sbjct: 231 TGTHLHKVLGDDNVLTVKFADV---QKSSSTYSIDHYFTYKGIAKNGIMIGLRRYQFFVF 287
Query: 305 XXXXXXXXXXXPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVA 364
ST VKCYF+R +S+AF DM YIL+GK+++EAR FMHV ++A
Sbjct: 288 KDGGKEEKKKDLSTKKVKCYFIRTDSTAFYDMQNPYILTGKSIYEARMHFMHVHRAPTLA 347
Query: 365 NYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDG-NVVYKDGEALIHTDGTGFISE 423
NYM+R SLILSKT LEVD + I ++I+D C D+DG +V+ K+ + IH+DGTG+ISE
Sbjct: 348 NYMARFSLILSKTKTLEVDMTGITFDQIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISE 407
Query: 424 DLALKCPTYVYKEKCTNDDSTERS 447
DLA CP ++K KC +S + +
Sbjct: 408 DLARMCPLNIFKGKCLRSESIQEA 431
>TAIR|locus:2052030 [details] [associations]
symbol:AT2G19920 species:3702 "Arabidopsis thaliana"
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0016441 "posttranscriptional gene silencing" evidence=ISS]
InterPro:IPR007855 Pfam:PF05183 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003723 GO:GO:0031047 EMBL:AC005169
GO:GO:0003968 KO:K11699 PANTHER:PTHR23079 IPI:IPI00546115
PIR:G84582 RefSeq:NP_179582.2 UniGene:At.50085 PRIDE:O82189
EnsemblPlants:AT2G19920.1 GeneID:816511 KEGG:ath:AT2G19920
TAIR:At2g19920 eggNOG:NOG266676 InParanoid:O82189 OMA:MSIHEAR
PhylomeDB:O82189 Genevestigator:O82189 Uniprot:O82189
Length = 927
Score = 1343 (477.8 bits), Expect = 1.1e-211, Sum P(2) = 1.1e-211
Identities = 275/501 (54%), Positives = 359/501 (71%)
Query: 469 EPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVK 528
EPPLL+Q+R+F +G+AVKG LLNK LPPQT+Q+RPSMIKV D++LS+ TFNSLEVV
Sbjct: 439 EPPLLIQIRMFNDGSAVKGIFLLNKNLPPQTVQVRPSMIKVYKDKNLSNFSTFNSLEVVT 498
Query: 529 TSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMD 588
TSN P++ LS+NL+ALLSYGGVP FFLDIL N L+ + +F R A K + +YG MD
Sbjct: 499 TSNPPKRAKLSKNLVALLSYGGVPNDFFLDILLNTLEKKKTIFFKVRAAGKAALHYGNMD 558
Query: 589 YDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKS 648
D + +MI++GI LDEPYL+H LS L+K EK L+AGKLP+ ESYYLMGTVDPTG LK
Sbjct: 559 -DKNALQMIMAGIPLDEPYLKHYLSKLLKLEKDDLKAGKLPIDESYYLMGTVDPTGELKE 617
Query: 649 NEVCIILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPR 708
+EV + K + VLVYRNPGLHFGDIH+LKATYVK LE +VG SKY +FFP GPR
Sbjct: 618 DEVSGLAKS-----QDVLVYRNPGLHFGDIHILKATYVKSLEQYVGNSKYGVFFPQKGPR 672
Query: 709 SLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTS--KNLSANKRLIDXXXXXXXXX 766
SL DEIAGGDFDGDMYF+SRNP+LL+H+K SE W+S+S + ++ +
Sbjct: 673 SLGDEIAGGDFDGDMYFISRNPKLLEHYKPSEPWVSSSPRSKIYTGRQPSELSPEQLEEE 732
Query: 767 XXXXXXNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALD 826
T F PS+ AAD W A+MDRFLTLGDE+ +EKA MK+ ML+L +IYYDA+D
Sbjct: 733 LFKIFLKTGFSPSSVIGQAADSWLAIMDRFLTLGDENVKEKAEMKKKMLKLTDIYYDAID 792
Query: 827 APKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWK 886
APK +G +V +P D+KV+ FP YM R+++ F+STS+LG I++TV + A D + + I K
Sbjct: 793 APK-TGTEVNLPLDVKVDLFPHYMERNKT--FKSTSILGLIFDTVDFHNAEDTTPSGISK 849
Query: 887 LPCFDDG-VPEACMTKWKGYYDQYRWEMKEAIDKCTVEREEAAELVIEKYKQILYGAAEF 945
L CF+D V E M K K ++ YR EM +A++ + +++ VI+KYKQ Y AA F
Sbjct: 850 LQCFEDEPVSEFDMEKCKLWHKDYRKEMCQAMNS---DDDDSCNEVIQKYKQEFYSAAGF 906
Query: 946 EQSTRTLEEIYNEALAIYNIT 966
++S + LEE+Y +ALA+YN+T
Sbjct: 907 KESKKILEELYPKALALYNVT 927
Score = 726 (260.6 bits), Expect = 1.1e-211, Sum P(2) = 1.1e-211
Identities = 150/295 (50%), Positives = 194/295 (65%)
Query: 152 VALGELEFRKAFLILSYIGENSLEEVITADEIRGMRDLQMARFESEVWEKLGRKNISQED 211
+ALGELEF+KAFL+L+Y+G SL EVI+ DEIR +DL M +E VW KLG Q +
Sbjct: 147 LALGELEFKKAFLLLTYLGGKSLGEVISGDEIRQWKDLPMVAYERAVWFKLG-----QNE 201
Query: 212 RRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGDDNILLVKFDEELGGH 271
RM L+ DSGKTH Y CH++ G+ KG +L T THL + LGDDN+L V+FD+
Sbjct: 202 ERMQLESDSGKTHYYQCHVAPDGSYRLKGYFLENTGTHLHKVLGDDNVLTVRFDQL---P 258
Query: 272 RSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFXXXXXXXXXXXPSTSPVKCYFVRMESS 331
+ S ++ YSKY EIA+ GI+VGLR Y FFVF ST VKCYF+R S+
Sbjct: 259 KESTYCDNPYSKYKEIAKNGIMVGLRRYQFFVFKDGGKAEKKKRNSTKQVKCYFIRTGST 318
Query: 332 AFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIER 391
A DM YILSG ++HEAR FMHV T+ S ANYM+R SLILSKT KLEVD + I + +
Sbjct: 319 ASSDMENPYILSGMSIHEARMHFMHVHTLPSPANYMARFSLILSKTKKLEVDMTEITVMQ 378
Query: 392 IEDEPCRDKDGN-VVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTE 445
I+D C D+ N V+ K+G+ IH+DGTG+ISEDLA CP ++K K ++ +
Sbjct: 379 IDDIHCHDQSNNDVLDKNGKPRIHSDGTGYISEDLARMCPLNIFKGKSMRSNNIQ 433
Score = 220 (82.5 bits), Expect = 3.3e-158, Sum P(2) = 3.3e-158
Identities = 70/195 (35%), Positives = 102/195 (52%)
Query: 13 VSLPLSVEQLISKIYTEQNKLPPDD-GARRSLASLGEDAALDVLRTIASDKIKYSFSGYI 71
++L SVE ++ K+Y + N PP RR L+S+ E+ AL+ LR + + + G I
Sbjct: 20 IALLGSVETMLEKVYGKHNHHPPIKVETRRRLSSISEELALETLRKVLNMPNVKTLDGII 79
Query: 72 NYLVKKRNN-NGSPLKRVCFSPSSPQQ-NRSPVTVTTVRLLNLPQGTDYVVKQSPVADQQ 129
Y + +GSP R+ +S SP Q R+P + R D ++ P + +
Sbjct: 80 IYFLNDAVTVDGSP--RL-WSGESPVQFPRTPGK-KSCRASQAEVSLD---REDP-SPKF 131
Query: 130 PRGSPMSSISHAMRHRASIPQYVALGELEFRKAFLILSYIGENSLEEVITADEIRGMRDL 189
RG H I +ALGELEF+KAFL+L+Y+G SL EVI+ DEIR +DL
Sbjct: 132 LRGDENGESKH-------ISLLLALGELEFKKAFLLLTYLGGKSLGEVISGDEIRQWKDL 184
Query: 190 QMARFESEVWEKLGR 204
M +E VW KLG+
Sbjct: 185 PMVAYERAVWFKLGQ 199
>TAIR|locus:2006822 [details] [associations]
symbol:RDR1 "AT1G14790" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0016441
"posttranscriptional gene silencing" evidence=ISS] [GO:0009615
"response to virus" evidence=IMP] [GO:0009751 "response to
salicylic acid stimulus" evidence=IEP] [GO:0060148 "positive
regulation of posttranscriptional gene silencing" evidence=IMP]
[GO:0000165 "MAPK cascade" evidence=RCA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0006612 "protein
targeting to membrane" evidence=RCA] [GO:0009617 "response to
bacterium" evidence=RCA] [GO:0009862 "systemic acquired resistance,
salicylic acid mediated signaling pathway" evidence=RCA]
[GO:0009867 "jasmonic acid mediated signaling pathway"
evidence=RCA] [GO:0010310 "regulation of hydrogen peroxide
metabolic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA] [GO:0031348
"negative regulation of defense response" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA] [GO:0010025
"wax biosynthetic process" evidence=IGI] InterPro:IPR007855
Pfam:PF05183 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006952
GO:GO:0010025 GO:GO:0009751 GO:GO:0003723 GO:GO:0009615
GO:GO:0031047 EMBL:AC006917 UniGene:At.70434 GO:GO:0003968
EMBL:AY148431 EMBL:AK228731 EMBL:AJ011977 IPI:IPI00542699
RefSeq:NP_172932.1 UniGene:At.27823 ProteinModelPortal:Q9LQV2
SMR:Q9LQV2 STRING:Q9LQV2 PaxDb:Q9LQV2 PRIDE:Q9LQV2
EnsemblPlants:AT1G14790.1 GeneID:838044 KEGG:ath:AT1G14790
TAIR:At1g14790 eggNOG:NOG307726 HOGENOM:HOG000239464
InParanoid:Q9LQV2 KO:K11699 OMA:YEDYITE PhylomeDB:Q9LQV2
ProtClustDB:CLSN2682981 Genevestigator:Q9LQV2 GO:GO:0060148
PANTHER:PTHR23079 Uniprot:Q9LQV2
Length = 1107
Score = 184 (69.8 bits), Expect = 5.2e-18, Sum P(4) = 5.2e-18
Identities = 82/293 (27%), Positives = 133/293 (45%)
Query: 452 ELEANFS-DVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVK 510
++ A F+ VAR P Q+R Y G KG + ++ + + +R SM K +
Sbjct: 540 KISAEFARKVARKCGLTEFSPSAFQIR--YGG--YKGVVAVDPN-SSKKLSLRKSMSKFE 594
Query: 511 ADRDLSDGQTFNSLEVVKTSN-QPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARG 569
++ L+V+ S QP Y++R LI LLS GV + F R +D
Sbjct: 595 SEN--------TKLDVLAWSKYQP--CYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDA 644
Query: 570 VFSNKRNALK-VSFNYGGMDYDFTSARMILSGISLD-EPYLQHRLSILMKEEKKSLQAG- 626
+ ++ A + + G + + A +IL G D EP+L L + L+
Sbjct: 645 ILTHPLEAHEALGLMAPGENTNILKA-LILCGYKPDAEPFLSMMLQNFRASKLLELRTKT 703
Query: 627 KLPVTESYYLMGTVDPTGILKSNEVCIILKD----GQ--VSWEKVLVYRNPGLHFGDIHV 680
++ ++ +MG +D T L+ +V + D G+ + V+V +NP LH GD+ V
Sbjct: 704 RIFISGGRSMMGCLDETRTLEYGQVVVQYSDPMRPGRRFIITGPVVVAKNPCLHPGDVRV 763
Query: 681 LKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
L+A V L V + FP G R +E +G D DGD+YFV + EL+
Sbjct: 764 LQAVNVPALNHMVD----CVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELV 812
Score = 99 (39.9 bits), Expect = 5.2e-18, Sum P(4) = 5.2e-18
Identities = 43/209 (20%), Positives = 96/209 (45%)
Query: 805 EEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVL 864
E A + + L + A+D PK +G+ +P+ L V+++P +M + + ++ES +V+
Sbjct: 866 EPLKAFSDPCIELAKKFSTAVDFPK-TGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVI 924
Query: 865 GTIYN----------TVKSY--EAVDRSVTEIWKLPCFDDGVPEACMTKWKGYYDQYRWE 912
G ++ ++KS+ + +S + ++ F++ V EA K YD ++
Sbjct: 925 GKLFREVKERAPPLISIKSFTLDVASKSYDKDMEVDGFEEYVDEAFYQK--ANYD---FK 979
Query: 913 MKEAIDKCTVEREEAAELV---IEKYKQILYGAAEFEQSTRTLEEIYNEALAIYNITYD- 968
+ +D ++ E AE++ I + + + E R + + E L+++N + +
Sbjct: 980 LGNLMDYYGIKTE--AEILSGGIMRMSKSFTKRRDAESIGRAVRALRKETLSLFNASEEE 1037
Query: 969 -----LAASRRQVSYCSFAWRVAGSALRK 992
A++ V+Y S W + L +
Sbjct: 1038 ENESAKASAWYHVTYHSSYWGLYNEGLNR 1066
Score = 75 (31.5 bits), Expect = 5.2e-18, Sum P(4) = 5.2e-18
Identities = 34/122 (27%), Positives = 52/122 (42%)
Query: 193 RFESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQR 252
R E + W G+ +S +SL D G +MY + T F GP +N + L+
Sbjct: 340 RDEYKKWISKGKLPLSPT---ISL--DDGLVYMYRVQV-TPARVYFSGPEVNVSNRVLRH 393
Query: 253 -ELGDDNILLVKF-DEELG-------GHRSSNNWNDS-YSKYNEIAREGILVGLRCYHFF 302
+N L V F DE+L RSS Y + + R+GI++G + + F
Sbjct: 394 YSKYINNFLRVSFVDEDLEKVRSMDLSPRSSTQRRTKLYDRIYSVLRDGIVIGDKKFEFL 453
Query: 303 VF 304
F
Sbjct: 454 AF 455
Score = 48 (22.0 bits), Expect = 5.2e-18, Sum P(4) = 5.2e-18
Identities = 21/75 (28%), Positives = 33/75 (44%)
Query: 354 FMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALI 413
F H+R +VA Y +RL S + + +N+ E E D + + G +
Sbjct: 486 FDHIR---NVAKYAARLGQSFSSSRET------LNVRSDEIEVIPDVE---IISLGTRYV 533
Query: 414 HTDGTGFISEDLALK 428
+DG G IS + A K
Sbjct: 534 FSDGIGKISAEFARK 548
Score = 38 (18.4 bits), Expect = 2.7e-14, Sum P(4) = 2.7e-14
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 213 RMSLKWDSGKTHMYHCHISTK 233
R SL SG + C +STK
Sbjct: 91 RASLHTISGLKMFFGCQVSTK 111
>TAIR|locus:2136068 [details] [associations]
symbol:RDR2 "RNA-dependent RNA polymerase 2" species:3702
"Arabidopsis thaliana" [GO:0003968 "RNA-directed RNA polymerase
activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0016441 "posttranscriptional gene silencing" evidence=ISS]
[GO:0009751 "response to salicylic acid stimulus" evidence=IEP]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA;IMP] [GO:0016458 "gene silencing" evidence=IMP]
[GO:0007267 "cell-cell signaling" evidence=RCA;IMP] [GO:0016246
"RNA interference" evidence=RCA;IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0010495 "long-distance posttranscriptional gene
silencing" evidence=IMP] [GO:0050832 "defense response to fungus"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0010014 "meristem initiation" evidence=RCA]
[GO:0010073 "meristem maintenance" evidence=RCA] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0016569 "covalent chromatin modification"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0043687 "post-translational protein
modification" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] InterPro:IPR007855
Pfam:PF05183 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161531
GO:GO:0005730 GO:GO:0050832 GO:GO:0007267 GO:GO:0003723
GO:GO:0030422 EMBL:AF080120 EMBL:AL049876 GO:GO:0010495
GO:GO:0003968 HOGENOM:HOG000239464 KO:K11699
ProtClustDB:CLSN2682981 PANTHER:PTHR23079 IPI:IPI00535843
PIR:T01920 RefSeq:NP_192851.1 UniGene:At.43417
ProteinModelPortal:O82504 SMR:O82504 STRING:O82504 PaxDb:O82504
PRIDE:O82504 EnsemblPlants:AT4G11130.1 GeneID:826714
KEGG:ath:AT4G11130 TAIR:At4g11130 eggNOG:NOG252917
InParanoid:O82504 OMA:SKCAARM PhylomeDB:O82504
Genevestigator:O82504 Uniprot:O82504
Length = 1133
Score = 129 (50.5 bits), Expect = 2.5e-16, Sum P(5) = 2.5e-16
Identities = 31/70 (44%), Positives = 41/70 (58%)
Query: 664 KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDM 723
KV+V +NP LH GDI VL A Y E+ G I FP G R +E +GGD DGD
Sbjct: 778 KVVVTKNPCLHPGDIRVLDAIYEVHFEE-KGYLD-CIIFPQKGERPHPNECSGGDLDGDQ 835
Query: 724 YFVSRNPELL 733
+FVS + +++
Sbjct: 836 FFVSWDEKII 845
Score = 112 (44.5 bits), Expect = 2.5e-16, Sum P(5) = 2.5e-16
Identities = 46/188 (24%), Positives = 82/188 (43%)
Query: 784 LAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKV 843
+ +D + L D E+ A + L L N++ A+D K +G E+P LK
Sbjct: 880 MISDTLGVISTAHLVHADRDPEK--ARSQKCLELANLHSRAVDFAK-TGAPAEMPYALKP 936
Query: 844 EKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCFDDGVPEACMTKW- 902
+FP ++ R E ++ S SV G +Y VKS A + E +D + EA +
Sbjct: 937 REFPDFLERFEKPTYISESVFGKLYRAVKSSLAQRKPEAESEDTVAYDVTLEEAGFESFI 996
Query: 903 ---KGYYDQYRWEMKEAIDKCTVEREEAAELVIEKYKQIL-------YGAAEFEQSTRTL 952
K + D Y ++ + EE I K K++ YG + ++ T ++
Sbjct: 997 ETAKAHRDMYGEKLTSLMIYYGAANEEEILTGILKTKEMYLARDNRRYGDMK-DRITLSV 1055
Query: 953 EEIYNEAL 960
++++ EA+
Sbjct: 1056 KDLHKEAM 1063
Score = 102 (41.0 bits), Expect = 2.5e-16, Sum P(5) = 2.5e-16
Identities = 45/186 (24%), Positives = 85/186 (45%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVK-T 529
P Q+R Y G KG + +++ + + +R SM+K ++ + L V + T
Sbjct: 578 PSAFQIR--YGG--YKGVIAVDRS-SFRKLSLRDSMLKFDSNNRM--------LNVTRWT 624
Query: 530 SNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDY 589
+ P +L+R +I LLS G+ + F + L + ++ AL V G +
Sbjct: 625 ESMP--CFLNREIICLLSTLGIEDAMFEAMQAVHLSMLGNMLEDRDAALNVLQKLSGENS 682
Query: 590 DFTSARMILSGIS-LDEPYLQHRLSILMKEEKKSLQAG-KLPVTESYYLMGTVDPTGILK 647
+M+L G + EPYL L + + + L++ ++ V + L+G +D GIL+
Sbjct: 683 KNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRILVPKGRILIGCMDEMGILE 742
Query: 648 SNEVCI 653
+V +
Sbjct: 743 YGQVYV 748
Score = 50 (22.7 bits), Expect = 2.5e-16, Sum P(5) = 2.5e-16
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 945 FEQSTRTLEEIYNEALAIYNITYDLAASRRQVSYCSFAWRVAGSAL 990
FE+S ++ A A Y +TY+ ++++ SF W + G L
Sbjct: 1066 FEKSCEDEQQKKKLASAWYYVTYNPNHRDEKLTFLSFPW-IVGDVL 1110
Score = 42 (19.8 bits), Expect = 2.5e-16, Sum P(5) = 2.5e-16
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 281 YSKYNEIAREGILVGLRCYHFFVF 304
Y++ I EGI VG + + F F
Sbjct: 451 YNRVLSILGEGITVGPKRFEFLAF 474
Score = 40 (19.1 bits), Expect = 3.6e-10, Sum P(4) = 3.6e-10
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 519 QTFNSLEVVKTSNQPRKTYLSRNLIALLS-YGGVPEIFFLDI 559
+T + VK SN P+ T ++ L+ L + G +F L+I
Sbjct: 4 ETTTNRSTVKISNVPQ-TIVADELLRFLELHLGEDTVFALEI 44
>DICTYBASE|DDB_G0291249 [details] [associations]
symbol:rrpB "RNA-directed RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR007855 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF05183 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0291249
GO:GO:0005524 EMBL:AAFI02000177 GenomeReviews:CM000155_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG1111 GO:GO:0003968 KO:K11699
PANTHER:PTHR23079 RefSeq:XP_635263.1 ProteinModelPortal:Q54EH7
EnsemblProtists:DDB0220017 GeneID:8628208 KEGG:ddi:DDB_G0291249
InParanoid:Q54EH7 OMA:NINERTN ProtClustDB:CLSZ2429575
Uniprot:Q54EH7
Length = 2403
Score = 239 (89.2 bits), Expect = 1.4e-15, P = 1.4e-15
Identities = 122/477 (25%), Positives = 206/477 (43%)
Query: 475 QVRLFYNGTAVKGTLLLNKKLP-PQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQP 533
QVR+ N KG L++N + P P I IRPSM+K + G +LE+ S
Sbjct: 1388 QVRIGGN----KGMLVVNNQAPDPSGIYIRPSMVKFNP---IVCGDEHRTLEICSVSTTS 1440
Query: 534 RKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTS 593
R L+R +I+LLS G + F + + L+ + N NA K + +++ F
Sbjct: 1441 R-CKLNRQVISLLSTLGTQDNVFFALQDHYLNQVAQIV-NDTNASKQAI----VEF-FPD 1493
Query: 594 ARMILSGISLDEPYLQHRLSILMKEEKKSLQAG-KLPVTESYYLMGTVDPTGILKSNEVC 652
I G +PY++ L L K + + +Q + + +S L+G DPT L N V
Sbjct: 1494 ---ITEGELYQDPYIRRILISLYKLKMERIQQKCHIEIKDSRMLLGVCDPTNSLPPNTVF 1550
Query: 653 IILK-------DGQVSWEKVL-----VYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAI 700
+ L+ DG+ +EKV+ V +NP H GD+ LKA L + +
Sbjct: 1551 VQLEEEDEDDDDGR-KYEKVIEGLVMVIKNPCTHPGDVRYLKAVDNLRLRHL----RNVL 1605
Query: 701 FFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDXXX 760
F G EI+G D DGD YF + L+ + +SE + +S N + +
Sbjct: 1606 VFSTKGDVPNFKEISGSDLDGDRYFFCYDKSLIGNRSKSETAYLGDETVSNNDKKANVF- 1664
Query: 761 XXXXXXXXXXXXNTRFCPSNAKSLAADCWQA--VMDRFLTLGDESAEEKAAMKENMLRLI 818
N F S+ S + + + + L + D A E +++
Sbjct: 1665 ------------NDPFALSSMYSTNVERQELGKMYNSHLAISDLFG----ANHEFSIQIS 1708
Query: 819 NIYYDALDAPKKSGIKVEVPED----LKVEKFPCYMRRDES--VSFESTSVLGTIYNTVK 872
+ +D PK +GI +P++ LK + +P YM+R+ S V ++S +++G +Y+ +
Sbjct: 1709 KECFKEIDYPK-TGIHGTIPKEANVWLKTKGYPHYMQRENSTRVYYQSKTIMGKMYDQID 1767
Query: 873 SYEAVDRSVTEIW--KLPCFDDGVPEACMTKWKGYYDQYRWEMKEAIDKCTVEREEA 927
+ + I K DD E + K Y QY+ ++ + + E EE+
Sbjct: 1768 QLVYIGDFLPNISLDKSNLVDDY--EIYLNSAKILYSQYKLQVHSLLRHYSAESEES 1822
>DICTYBASE|DDB_G0289659 [details] [associations]
symbol:rrpA "RNA-directed RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR007855 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF05183 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0289659
GO:GO:0005524 GenomeReviews:CM000154_GR GO:GO:0003676
EMBL:AAFI02000148 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG1111 GO:GO:0003968 PANTHER:PTHR23079
ProtClustDB:CLSZ2429575 RefSeq:XP_636093.1
ProteinModelPortal:Q54H25 EnsemblProtists:DDB0191515 GeneID:8627305
KEGG:ddi:DDB_G0289659 InParanoid:Q54H25 Uniprot:Q54H25
Length = 2417
Score = 238 (88.8 bits), Expect = 1.9e-15, P = 1.9e-15
Identities = 121/478 (25%), Positives = 206/478 (43%)
Query: 475 QVRLFYNGTAVKGTLLLNKKLP-PQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQP 533
QVR+ N KG L++N + P P I IRPSM+K + G +LE+ S
Sbjct: 1373 QVRIGGN----KGVLVVNNQAPDPSGIYIRPSMVKFNP---IDCGDEHRTLEICSVSTTS 1425
Query: 534 RKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTS 593
R L+R +I+LLS G + F + + L+ + N NA K + +++ F
Sbjct: 1426 R-CKLNRQVISLLSTLGTQDNVFFALQDHYLNQVAQIV-NDTNASKQAI----VEF-FPD 1478
Query: 594 ARMILSGISLDEPYLQHRLSILMKEEKKSLQAG-KLPVTESYYLMGTVDPTGILKSNEVC 652
I G +PY++ L L K + + +Q + + +S L+G DPT L N V
Sbjct: 1479 ---ITEGELYQDPYIRRILISLYKLKMERIQQKCHIEIKDSRMLLGVCDPTNSLPPNTVF 1535
Query: 653 IILK--------DGQVSWEKVL-----VYRNPGLHFGDIHVLKATYVKELEDFVGTSKYA 699
+ L+ DG+ +EKV+ V +NP H GD+ LKA L +
Sbjct: 1536 VQLEEEDEDDDDDGR-KYEKVIEGLVMVIKNPCTHPGDVRYLKAVDNIRLRHL----RNV 1590
Query: 700 IFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDXX 759
+ F G EI+G D DGD YF + L+ + ESE + +S N + +
Sbjct: 1591 LVFSTKGDVPNFKEISGSDLDGDRYFFCYDKSLIGNRSESETAYLVVETVSNNDKKANVF 1650
Query: 760 XXXXXXXXXXXXXNTRFCPSNAKSLAADCWQA--VMDRFLTLGDESAEEKAAMKENMLRL 817
N F S+ S A+ + + L + D+ A + +++
Sbjct: 1651 -------------NDPFALSSMYSTNAERQELGKLYHSHLAISDQYG----ANHKYSIQI 1693
Query: 818 INIYYDALDAPKKSGIKVEVPEDLKVEK----FPCYMRRDES--VSFESTSVLGTIYNTV 871
+ +D PK +GI +P+++ + +P YM+R+ S V ++S ++G +Y+ +
Sbjct: 1694 SKECFKEIDYPK-TGIHGTIPKEVNIRLQTVGYPHYMQRENSTRVYYQSKKIMGKMYDQI 1752
Query: 872 KSYEAVDRSVTEIWKLPCFD--DGVPEACMTKWKGYYDQYRWEMKEAIDKCTVEREEA 927
+ + I L + DG E + K Y QY+ ++ + + E EE+
Sbjct: 1753 DQLVYIGDFLPNI-SLDKSNLVDGY-EIYLNSAKILYSQYKLQVHSLLRHYSAESEES 1808
>POMBASE|SPAC6F12.09 [details] [associations]
symbol:rdp1 "RNA-directed RNA polymerase Rdp1"
species:4896 "Schizosaccharomyces pombe" [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003968 "RNA-directed RNA polymerase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005721 "centromeric heterochromatin" evidence=IDA] [GO:0005724
"nuclear telomeric heterochromatin" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0030702 "chromatin silencing at
centromere" evidence=IMP] [GO:0031047 "gene silencing by RNA"
evidence=IMP] [GO:0031048 "chromatin silencing by small RNA"
evidence=IDA] [GO:0031060 "regulation of histone methylation"
evidence=IMP] [GO:0031380 "nuclear RNA-directed RNA polymerase
complex" evidence=IDA] [GO:0031934 "mating-type region
heterochromatin" evidence=IDA] [GO:0034613 "cellular protein
localization" evidence=IMP] [GO:0045141 "meiotic telomere
clustering" evidence=IMP] [GO:0071276 "cellular response to cadmium
ion" evidence=IMP] [GO:0071585 "detoxification of cadmium ion"
evidence=IMP] InterPro:IPR007855 Pfam:PF05183 PomBase:SPAC6F12.09
GO:GO:0005829 EMBL:CU329670 GO:GO:0034613 GenomeReviews:CU329670_GR
GO:GO:0071276 GO:GO:0071585 GO:GO:0003723 GO:GO:0030702
GO:GO:0000070 GO:GO:0031048 GO:GO:0005721 GO:GO:0031934
GO:GO:0005724 GO:GO:0045141 GO:GO:0031060 GO:GO:0031380
GO:GO:0003968 eggNOG:NOG307726 KO:K11699 PANTHER:PTHR23079
PIR:T11660 RefSeq:NP_593295.1 IntAct:O14227 STRING:O14227
EnsemblFungi:SPAC6F12.09.1 GeneID:2542198 KEGG:spo:SPAC6F12.09
OMA:RISAQNT OrthoDB:EOG44QX81 NextBio:20803268 Uniprot:O14227
Length = 1215
Score = 145 (56.1 bits), Expect = 1.9e-11, Sum P(5) = 1.9e-11
Identities = 52/210 (24%), Positives = 86/210 (40%)
Query: 666 LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYF 725
+V RNP LH GD+ V KA EL K I FP G RS+ +GGD DGD Y
Sbjct: 851 IVARNPSLHPGDVRVCKAVRCDELMHL----KNVIVFPTTGDRSIPAMCSGGDLDGDEYT 906
Query: 726 VSRNPELLKHFKESERWMSTSKNLSANKRLIDXXXXXXXXXXXXXXXNTRFCPSNAKSLA 785
V + LL + +S K+ ID + ++ L
Sbjct: 907 VIWDQRLLPKIVNYPPLLESSP-----KKSIDFLEGKPLIDSVKEFF-VNYIKYDSLGLI 960
Query: 786 ADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEK 845
++ W+A D + L L ++ A+D K SG+ ++ ++
Sbjct: 961 SNAWKAWAH------DHDNNPEGIFGNVCLELAEMHSKAVDFAK-SGVACKMQAKYHPKR 1013
Query: 846 FPCYMRRDESVSFESTSVLGTIYNTVKSYE 875
+P +M++ ++ SF S + +G I+ ++
Sbjct: 1014 YPDFMQKTKTRSFRSETAVGKIFRYAARFQ 1043
Score = 109 (43.4 bits), Expect = 1.9e-11, Sum P(5) = 1.9e-11
Identities = 44/168 (26%), Positives = 78/168 (46%)
Query: 486 KGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNS-LEVVKTSNQPRKTYLSRNLIA 544
KG L L PP ++ + V R ++F+S LEV+K S +L+ LI
Sbjct: 649 KGVLSL---APPTKLEYHQGNL-VFPRRSQDKFKSFHSTLEVIKISRFSN-AHLNMQLIT 703
Query: 545 LLSYGGVPEIFFLDILRNALDDAR-GVFSNKRNALKVSFNYGGMDYDFTSARMILSG-IS 602
LL GV + FL++ R+ L + S +++ L + N A I +G +
Sbjct: 704 LLEGLGVEKTVFLELTRSQLSKMNESINSKQKSILMLRDNVDEYHSTLIIADFIQAGFLE 763
Query: 603 LDEPYLQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKSN 649
D+ + ++ L++ + + + + K+ V + YL+G D TG LK +
Sbjct: 764 RDDAFTENLLNLYYEWVLRLIKEKQKVSVPKGAYLLGVADETGTLKGH 811
Score = 47 (21.6 bits), Expect = 1.9e-11, Sum P(5) = 1.9e-11
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 269 GGHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVF 304
GG N YS+ ++ GI VG + Y F F
Sbjct: 504 GGSDGFRN-EKLYSRIQQLLTYGIKVGNQIYEFLAF 538
Score = 47 (21.6 bits), Expect = 1.9e-11, Sum P(5) = 1.9e-11
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 924 REEAA---ELVIEKYKQ-ILYGAAEFEQS---TRTLEEIYNEALAI-YNITYD 968
REE + +L+ +KY Q L A QS + EE N A+A Y++TYD
Sbjct: 1124 REEVSFQFDLLKKKYTQEYLEKCALSNQSAFDSSEYEERINSAVAATYDVTYD 1176
Score = 38 (18.4 bits), Expect = 1.9e-11, Sum P(5) = 1.9e-11
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 143 RHRASIPQYVALGELEFRKAFLILSYIGENSLEEV 177
+HR S+ + E+E A+L+ + + +N L E+
Sbjct: 367 KHRCSL---INDKEIEEEIAYLLQACLSKNLLSEI 398
>UNIPROTKB|G4NJ50 [details] [associations]
symbol:MGG_02748 "RNA-dependent RNA polymerase 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR007855 Pfam:PF05183 EMBL:CM001237
GO:GO:0003968 KO:K11699 PANTHER:PTHR23079 RefSeq:XP_003721007.1
EnsemblFungi:MGG_02748T0 GeneID:5050479 KEGG:mgr:MGG_02748
Uniprot:G4NJ50
Length = 1407
Score = 111 (44.1 bits), Expect = 7.2e-11, Sum P(4) = 7.2e-11
Identities = 34/95 (35%), Positives = 47/95 (49%)
Query: 644 GILKSNEVCIILKDGQVSWEKV-----LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKY 698
G +K E+ + + DG KV LV RNP LH GDI V++A V +L +
Sbjct: 824 GNMKLPEIFLQVPDGPSRDYKVITGLCLVGRNPSLHPGDIRVVQAIDVPQLRHI----RD 879
Query: 699 AIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
+ F G R + +GGD DGD +FV + LL
Sbjct: 880 VVVFAQTGDRDIPGMCSGGDLDGDDFFVLWDERLL 914
Score = 95 (38.5 bits), Expect = 7.2e-11, Sum P(4) = 7.2e-11
Identities = 42/164 (25%), Positives = 76/164 (46%)
Query: 486 KGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIAL 545
KG L++ + + Q I IRPS +K + D + LEV++ S+ + L+R I++
Sbjct: 651 KGVLVVWEDVKGQEIHIRPSQLKFETDH--------SRLEVIRCSHFSVAS-LNRQTISV 701
Query: 546 LSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDY-DFTSARMILSG-ISL 603
L+ GV F +L L + A+ + Y + T AR++ +G +
Sbjct: 702 LTSLGVKNEVFESMLAEQLAKYNRAMEDATAAMTLLTQYVDENQMTNTLARLVKAGFMES 761
Query: 604 DEPYLQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGIL 646
EP++ L + K+L + +L V + +++G VD T L
Sbjct: 762 HEPFVCTMLRLWRTWSVKTLKEKARLVVEKGAFVLGCVDETKTL 805
Score = 78 (32.5 bits), Expect = 7.2e-11, Sum P(4) = 7.2e-11
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 804 AEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSV 863
A++ A E L L ++ A+D PK +G+ + L +FP +M + + S +
Sbjct: 968 ADKYGAKDEKCLELAYLHSLAVDYPK-TGVPAAIRPRLMPNEFPHFMEKARG-RYHSRKI 1025
Query: 864 LGTIYNTVK 872
LG +Y+ VK
Sbjct: 1026 LGKLYDQVK 1034
Score = 59 (25.8 bits), Expect = 7.2e-11, Sum P(4) = 7.2e-11
Identities = 23/89 (25%), Positives = 41/89 (46%)
Query: 227 HCHISTKGNCTFKGPYLN----QTRTHLQRELGD--DNILLVKFDEEL--GGHRSSNNW- 277
+C ++ K T YL+ +T + R + D L V+F +EL G + N+
Sbjct: 452 YCTMTRKVTVTPSTMYLSSPMVETTNRVLRHYNEHKDRFLRVQFTDELPTGRLHAPNDLG 511
Query: 278 --NDSYSKYNEIAREGILVGLRCYHFFVF 304
++ +S+ + + GI +G R Y F F
Sbjct: 512 ADDEIFSRVYRVLKNGIHIGDRHYKFLAF 540
>ASPGD|ASPL0000040001 [details] [associations]
symbol:rrpC species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003968 "RNA-directed RNA
polymerase activity" evidence=IEA] InterPro:IPR007855 Pfam:PF05183
EMBL:BN001306 GO:GO:0003968 eggNOG:NOG307726 KO:K11699
PANTHER:PTHR23079 EMBL:AACD01000048 RefSeq:XP_660321.1
EnsemblFungi:CADANIAT00010398 GeneID:2874470 KEGG:ani:AN2717.2
HOGENOM:HOG000166092 OMA:KHKARIP OrthoDB:EOG4VMJPG Uniprot:Q5B9R3
Length = 1203
Score = 203 (76.5 bits), Expect = 8.2e-11, Sum P(2) = 8.2e-11
Identities = 76/272 (27%), Positives = 126/272 (46%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P Q+RL G A KG L L+ +L I IRPSM K + D ++ +E+ +
Sbjct: 580 PTCFQIRL---GGA-KGMLSLDPRLRGSKICIRPSMTKFQTDDQVN-------VEICGSG 628
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYD 590
++P +L+R +I +L GV +F+ + ++ R + +N +F G D
Sbjct: 629 SKPIPLFLNRQVIKILEDMGVDREWFMTLQELRIEQLRKATATTKNT--ATFVKGQSVAD 686
Query: 591 FTSA-RMIL--SGISLDE---PYLQHRLSILMKEEKKSLQ-AGKLPVTESYYLMGTVDPT 643
R+ L + LD P+L+ + ++ E + L+ ++PV + L G +D T
Sbjct: 687 CVKLYRLFLLFHNLKLDYKKIPFLRAVVEAMVLRELRLLKHKARIPVHKGITLYGVMDET 746
Query: 644 GILKSNEVCIILK--DGQVSWE---KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKY 698
G L NEV + + D + ++LV R+P LH GDI V + +
Sbjct: 747 GFLNENEVFVTYQAMDRLAAPPQNCRLLVTRSPALHNGDIQY-PYNVVPPKGHPLQQQRN 805
Query: 699 AIFFPCNGPRSLADEIAGGDFDGDMYFVSRNP 730
I F G R L +++GGD DGD+Y + +P
Sbjct: 806 CIVFSQKGTRDLPSQLSGGDLDGDLYNIIWDP 837
Score = 41 (19.5 bits), Expect = 8.2e-11, Sum P(2) = 8.2e-11
Identities = 14/66 (21%), Positives = 26/66 (39%)
Query: 858 FESTSVLGTIYNTVKSYE--------AVDRSVTEIWKLPCFDDGVPEACMT-----KWKG 904
+ S +LG +Y + +E V+ + T +WK D + C+ WK
Sbjct: 977 YRSEKILGKLYRAINEHEIWTKDIHTTVNSNPTAVWKR--IIDSLTGRCIALGAPVNWKA 1034
Query: 905 YYDQYR 910
+ + R
Sbjct: 1035 HVETAR 1040
Score = 38 (18.4 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 15/54 (27%), Positives = 22/54 (40%)
Query: 817 LINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDES---VSFESTSVLGTI 867
L NI +D APK+ P + ++ R D + V F + LG I
Sbjct: 830 LYNIIWDPAAAPKRVFTPANYPRNPPLDIKRVVEREDMANFFVEFMQSDRLGVI 883
Score = 37 (18.1 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 962 IYNITYDLAASRRQV 976
+YNI +D AA+ ++V
Sbjct: 830 LYNIIWDPAAAPKRV 844
>UNIPROTKB|Q8LHH9 [details] [associations]
symbol:SHL2 "Probable RNA-dependent RNA polymerase SHL2"
species:39947 "Oryza sativa Japonica Group" [GO:0010492
"maintenance of shoot apical meristem identity" evidence=IMP]
[GO:0016246 "RNA interference" evidence=IMP] InterPro:IPR007855
Pfam:PF05183 GO:GO:0005634 GO:GO:0016246 GO:GO:0003723
GO:GO:0048440 GO:GO:0048366 GO:GO:0010492 GO:GO:0010267
EMBL:AP008207 GO:GO:0048544 GO:GO:0009616 GO:GO:0003968
eggNOG:NOG307726 HOGENOM:HOG000239464 PANTHER:PTHR23079 OMA:SCAEQGN
EMBL:AB353923 EMBL:AP004357 RefSeq:NP_001043229.1 UniGene:Os.30747
EnsemblPlants:LOC_Os01g34350.1 GeneID:4323938 Gramene:Q8LHH9
ProtClustDB:CLSN2691477 BRENDA:2.7.7.48 Uniprot:Q8LHH9
Length = 1218
Score = 138 (53.6 bits), Expect = 4.1e-10, Sum P(3) = 4.1e-10
Identities = 45/148 (30%), Positives = 74/148 (50%)
Query: 612 LSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCI----------ILKDGQ-- 659
L+I + + L+ ++ V + +LMG +D G+L+ + I +K G
Sbjct: 765 LAIRSAQLQDLLEKARIFVPKGRWLMGCLDELGVLEQGQCFIRATVPSLNSYFVKHGSRF 824
Query: 660 VSWEK--------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLA 711
S +K V++ +NP LH GD+ +L+A V EL V + FP G R A
Sbjct: 825 SSTDKNTEVILGTVVIAKNPCLHPGDVRILEAVDVPELHHLVD----CLVFPQKGERPHA 880
Query: 712 DEIAGGDFDGDMYFVSRNPELLKHFKES 739
+E +G D DGD+YFV+ + +L+ K+S
Sbjct: 881 NEASGSDLDGDLYFVTWDEKLIPPGKKS 908
Score = 116 (45.9 bits), Expect = 8.1e-08, Sum P(3) = 8.1e-08
Identities = 51/189 (26%), Positives = 88/189 (46%)
Query: 470 PPLLMQVRLFYNGTAVKGTLLLNKKLPPQT-IQIRPSMIKVKADRDLSDGQTFNSLEVVK 528
PP Q+R KG + + + T + +RPSM K +++ + LEVV
Sbjct: 634 PPSAYQIRF----AGFKGVIAVWQGHGDGTRLFLRPSMRKFESNHLV--------LEVVS 681
Query: 529 -TSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGM 587
T QP +L+R +I LLS VP+ F + L + + S++ A +V
Sbjct: 682 WTKFQPG--FLNRQIIILLSSLNVPDSIFWQMQETMLSNLNNILSDRDVAFEV-LTTSCA 738
Query: 588 DYDFTSARMILSGIS-LDEPYLQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGI 645
D T+A M+ +G EP+L+ L + + + L + ++ V + +LMG +D G+
Sbjct: 739 DDGNTAALMLSAGFEPRTEPHLKAMLLAIRSAQLQDLLEKARIFVPKGRWLMGCLDELGV 798
Query: 646 LKSNEVCII 654
L+ + C I
Sbjct: 799 LEQGQ-CFI 806
Score = 97 (39.2 bits), Expect = 4.1e-10, Sum P(3) = 4.1e-10
Identities = 42/177 (23%), Positives = 80/177 (45%)
Query: 806 EKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLG 865
E AM E + L + A+D PK + + +P LK + +P +M +++ S++S +LG
Sbjct: 959 EYGAMDEKCIHLAELAATAVDFPKTGKLAI-MPPHLKPKVYPDFMGKEDGQSYKSEKILG 1017
Query: 866 TIYNTVKSY---EAVDRSVTEIWKLPC-FDDGVPEAC---MTKW--KGYYDQYRWEMKEA 916
+Y +++ + V + V LP D VP A + W K YD ++
Sbjct: 1018 RLYRSIQEASNGDVVSQEVCTPNDLPYDIDLEVPGASDFLASAWQCKCSYDA---QLSAL 1074
Query: 917 IDKCTVEREEAAELVIEKYKQILYGAAEFEQSTRT-LEEIYNEALAIYNITYDLAAS 972
+ + V E AELV ++ +++ + + L+ Y+ + T++ AS
Sbjct: 1075 LSQYRVRTE--AELVTGHITFLVKNSSKKQGDIKDRLKTAYSALRKEFKSTFESIAS 1129
Score = 52 (23.4 bits), Expect = 4.1e-10, Sum P(3) = 4.1e-10
Identities = 29/108 (26%), Positives = 47/108 (43%)
Query: 322 KCYFVRMESSAFIDMGYQYILSG-KTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKL 380
K F+ S+ D + KT EA +M T +VA + +R+ S T
Sbjct: 528 KYSFLAFSSNQLRDKSAWFFAEDRKTTVEAIRKWMGRFTSKNVAKHAARMGQCFSST--- 584
Query: 381 EVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALK 428
++ + + DE D +VV+ + I +DG G I+ DLAL+
Sbjct: 585 ---YATVTMR--PDEVDESFD-DVVHNE---YIFSDGIGKITPDLALE 623
Score = 37 (18.1 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 558 DILRNALDDARGVFSNKRNALKVSFNYGGMDYDF 591
D++ N V+ R L F+ G Y F
Sbjct: 498 DLMSNFFQQKTTVYKRVRMLLTEGFHMCGRKYSF 531
>TAIR|locus:2114633 [details] [associations]
symbol:RDR6 "AT3G49500" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0016441
"posttranscriptional gene silencing" evidence=TAS] [GO:0030422
"production of siRNA involved in RNA interference" evidence=TAS]
[GO:0048366 "leaf development" evidence=IGI] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=IMP] [GO:0051607 "defense response to virus" evidence=IMP]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IMP] [GO:0009616 "virus induced gene silencing"
evidence=IMP] [GO:0031047 "gene silencing by RNA" evidence=IMP]
[GO:0048440 "carpel development" evidence=IGI] [GO:0048467
"gynoecium development" evidence=IMP] [GO:0048544 "recognition of
pollen" evidence=IMP] InterPro:IPR007855 Pfam:PF05183 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AC012329 GO:GO:0003723
GO:GO:0048440 GO:GO:0048366 GO:GO:0010492 GO:GO:0010267
GO:GO:0048544 GO:GO:0003887 GO:GO:0009616 EMBL:AL132964
GO:GO:0003968 eggNOG:NOG307726 HOGENOM:HOG000239464 KO:K11699
ProtClustDB:CLSN2682981 PANTHER:PTHR23079 EMBL:AF239718
EMBL:AF268093 IPI:IPI00524423 RefSeq:NP_190519.1 UniGene:At.65263
ProteinModelPortal:Q9SG02 SMR:Q9SG02 MINT:MINT-7014695
STRING:Q9SG02 PaxDb:Q9SG02 PRIDE:Q9SG02 EnsemblPlants:AT3G49500.1
GeneID:824112 KEGG:ath:AT3G49500 TAIR:At3g49500 InParanoid:Q9SG02
OMA:SCAEQGN PhylomeDB:Q9SG02 Genevestigator:Q9SG02 Uniprot:Q9SG02
Length = 1196
Score = 127 (49.8 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 80/337 (23%), Positives = 139/337 (41%)
Query: 624 QAGKLPVTESYYLMGTVDPTGILK-----------SNEVCII-----LKDGQVSWEKVLV 667
+ ++ VT +LMG +D GIL+ S E C K+ + E V
Sbjct: 753 EKSRIFVTSGRWLMGCLDEAGILEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKG 812
Query: 668 Y----RNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDM 723
Y +NP LH GD+ +L+A V +L + FP G R +E +G D DGD+
Sbjct: 813 YVAIAKNPCLHPGDVRILEAVDVPQLHHMYD----CLIFPQKGDRPHTNEASGSDLDGDL 868
Query: 724 YFVSRNPELLKHFKESERWMSTSKNLSANKRLIDXXXXXXXXXXXXXXXNTRFCPSNAKS 783
YFV+ + +L+ ++S + + + + K L + A++
Sbjct: 869 YFVAWDQKLIPPNRKS--YPAMHYDAAEEKSL------------GRAVNHQDIIDFFARN 914
Query: 784 LAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGI-------KVE 836
LA + + + + D S E AM E L L + A+D PK I K +
Sbjct: 915 LANEQLGTICNAHVVHADRS--EYGAMDEECLLLAELAATAVDFPKTGKIVSMPFHLKPK 972
Query: 837 V-PEDLKVEKFPCYMRRDESVSFESTSVLGTIYNT---VKSYEAVDRSVTE---IWKLPC 889
+ P+ + E + Y + + + +Y+ S E+ D S + ++P
Sbjct: 973 LYPDFMGKEDYQTY--KSNKILGRLYRRVKEVYDEDAEASSEESTDPSAIPYDAVLEIPG 1030
Query: 890 FDDGVPEACMTKWKGYYDQYRWEMKEAIDKCTVEREE 926
F+D +PEA W G+ Y ++ + + V++EE
Sbjct: 1031 FEDLIPEA----W-GHKCLYDGQLIGLLGQYKVQKEE 1062
Score = 106 (42.4 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 40/134 (29%), Positives = 65/134 (48%)
Query: 524 LEVVK-TSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSF 582
LE+ T QP +L+R +I LLS GVP+ F D+ + L + + A +V
Sbjct: 653 LEICSWTRFQPG--FLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEV-L 709
Query: 583 NYGGMDYDFTSARMILSGIS-LDEPYLQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTV 640
+ T+A M+ +G EP+L+ LS + + L + ++ VT +LMG +
Sbjct: 710 TASCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCL 769
Query: 641 DPTGILKSNEVCII 654
D GIL+ + C I
Sbjct: 770 DEAGILEHGQ-CFI 782
>DICTYBASE|DDB_G0280963 [details] [associations]
symbol:rrpC "RNA-directed RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR007855 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF05183 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280963 GO:GO:0005524
GenomeReviews:CM000152_GR EMBL:AAFI02000040 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG1111 GO:GO:0003968 PANTHER:PTHR23079
ProtClustDB:CLSZ2429575 RefSeq:XP_640790.1
ProteinModelPortal:Q54UI6 STRING:Q54UI6 EnsemblProtists:DDB0216193
GeneID:8622843 KEGG:ddi:DDB_G0280963 InParanoid:Q54UI6 OMA:YELFNDY
Uniprot:Q54UI6
Length = 2285
Score = 193 (73.0 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 120/467 (25%), Positives = 193/467 (41%)
Query: 459 DVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSD- 517
++ +++Y Q+RL G+ KG L+LN+ + ++QIRPSM K + D
Sbjct: 1242 ELINQQNNYNSSTCAYQIRL--GGS--KGVLVLNENIDEMSLQIRPSMSKFELDYKSGQL 1297
Query: 518 GQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNA 577
+ +LE+V S R L+R I LLS GV + FL +L L+ N +
Sbjct: 1298 DEEHKTLEIVSASTTSR-CKLNRQAITLLSNAGVEDSTFLQMLEVELNQ------NAQTL 1350
Query: 578 LKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGK-LPVTESYYL 636
+ V+ + + DF + I ++ Y++ L L K + +Q + V ES L
Sbjct: 1351 VDVNLSKELLG-DFF--QHITEYELFNDYYIRSILLKLYKSKLIKIQDKCWIEVKESRNL 1407
Query: 637 MGTVDPTGILKSNEVCIILKD---------GQVSWEKVLVYRNPGLHFGDIHVLKATYVK 687
+G D +G L + V I +++ +V +V V +NP H GD+ LKA
Sbjct: 1408 LGVCDTSGTLPEDTVYIEVEELDPIDNLMKPKVIIGRVAVLKNPCHHPGDVRFLKAIDHP 1467
Query: 688 ELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKH-FKESERWMS-- 744
L + +FF NG + +G D DGD YFV + L++ E ++
Sbjct: 1468 PLNG----KRNVLFFSTNGMVPNFKQCSGSDLDGDRYFVIYDQTLIREDLITHEPYLGEE 1523
Query: 745 -TSKNLSANKRLIDXXXXXXXXXXXXXXXNTRFCPSNAKSLAADCWQAVMDRFLTLGDES 803
T L + D T +N + +D + +D+ LG S
Sbjct: 1524 QTVNPLIGEEDSDDDQYENDDNDITIPTSTTTKSTNNTPTKLSDIYLKNVDKS-KLGTIS 1582
Query: 804 AEEKAAMKENMLRLINIYYDALD-APKKSGIKVEV----PEDLKV---EK-FPCYMRRDE 854
A + IN A+ A + +K V P D+K EK +P +M+
Sbjct: 1583 NTHLAISDIEKVSSINSIKVAIQCAIEVDSVKTSVHGIIPRDVKSILKEKGYPHFMKIKN 1642
Query: 855 SVSFESTSVLGTIYNTVKSYEAVDRSVTEIW----KLPCFDDGVPEA 897
+FE G N K Y + DR + +I+ L F D +PEA
Sbjct: 1643 GSTFEYKG--G---NQRKYYIS-DRVIGKIYDSAENLLWFGDFLPEA 1683
Score = 44 (20.5 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 79 NNNGSPLKRVCFSPSSPQQNRSPVTVTTVRLLNLPQGT 116
NNN P+ + P Q++ ++ +L LP GT
Sbjct: 7 NNNNIPILKNNVKPRQYQEDAFNQCISRNTILVLPTGT 44
>WB|WBGene00004509 [details] [associations]
symbol:rrf-2 species:6239 "Caenorhabditis elegans"
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] InterPro:IPR007855 Pfam:PF05183 GO:GO:0003968
PANTHER:PTHR23079 GeneTree:ENSGT00390000016620 EMBL:AL132848
EMBL:Z81571 RefSeq:NP_493057.1 ProteinModelPortal:G5EFA8
EnsemblMetazoa:M01G12.12 GeneID:173092 KEGG:cel:CELE_M01G12.12
CTD:173092 WormBase:M01G12.12 NextBio:878243 Uniprot:G5EFA8
Length = 1579
Score = 132 (51.5 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 57/195 (29%), Positives = 88/195 (45%)
Query: 575 RNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQH--RLSILMKEEKKSLQAG-KLPVT 631
RN LK F +D D+ R I +EP+ + + SI K+ + ++P
Sbjct: 773 RNKLK-EFPRR-IDIDYL--RTIWGFTLSNEPFFRSLVKASIKFAITKQLFKEQIQIPSE 828
Query: 632 ESYYLMGTVDPTGILKSNEVCI--------IL--KDG-------QVSWEKVLVYRNPGLH 674
++G VD TGIL+ +V + IL +D ++ VL+ +NPG+
Sbjct: 829 LGRSMLGVVDETGILQYGQVFVQYTKNHRNILPPRDSNRKVLGSEIVTGTVLLTKNPGIV 888
Query: 675 FGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLK 734
GD+ + +A + EL + FP +GPR DE+AG D DGD Y V + +LL
Sbjct: 889 PGDVRIFEAVDIPELHHLCDV----VVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQKLLL 944
Query: 735 HFKESERWMSTSKNL 749
E + KNL
Sbjct: 945 ERNEEAFDFAVEKNL 959
Score = 66 (28.3 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 42/176 (23%), Positives = 75/176 (42%)
Query: 829 KKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLP 888
K K+EV E ++V+ F YM E + S G + +T+ +Y +S EI
Sbjct: 1089 KSEQYKIEVDESIRVDGFEEYM---EDAKKQLASYNGQLKSTMDTYGI--QSEGEIMSGC 1143
Query: 889 CFD--DGVPEACMTKWKGYYDQYRW---EMKEAIDKC-TV--ER----EEAAELVIEKYK 936
+ + + ++ +Y+ R +M + K T+ ++ +E L+ + Y
Sbjct: 1144 IIEMRNRISDSDQDDMS-FYNTNRMIETKMTALVSKFRTIFFQQFGGFQEVCTLLPDAYN 1202
Query: 937 QILYGAAEFEQSTRTLEEIYNEALAIYNITYDLAASRRQVSYCSFAWRVAGSALRK 992
+ + E EEI +A+A Y Y+ A S R+ SFAW +A + K
Sbjct: 1203 ESNFFNFRCENPN---EEIRKKAVAWYRACYECAKSTREPRKLSFAW-IAYDVIAK 1254
>WB|WBGene00004510 [details] [associations]
symbol:rrf-3 species:6239 "Caenorhabditis elegans"
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007855 Pfam:PF05183 EMBL:Z48334 GO:GO:0003968
PANTHER:PTHR23079 EMBL:Z66500 GeneTree:ENSGT00390000016620
RefSeq:NP_495713.2 IntAct:G5EE53 EnsemblMetazoa:F10B5.7
GeneID:174315 KEGG:cel:CELE_F10B5.7 CTD:174315 WormBase:F10B5.7
OMA:HISKAKI Uniprot:G5EE53
Length = 1765
Score = 134 (52.2 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 57/207 (27%), Positives = 86/207 (41%)
Query: 560 LRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLD-EPYLQHRL-SILMK 617
L L + N+ A + N + D+ +A +G L +P ++ L SI
Sbjct: 969 LERELCSLSNMLINENQAAEELVNRTNLAIDWNAASK-RAGFELSVDPLIRDMLFSIYRY 1027
Query: 618 EEKKSLQAGK--LPVTESYYLMGTVDPTGILKSNEVCIILKDG--QVSWE------KVLV 667
+ K LP + + G VD TG+L+ +V I Q S KVL+
Sbjct: 1028 NIIHHISKAKIFLPPSLGRSMYGVVDETGLLQYGQVFIQYSPSIRQTSNRPILKTGKVLI 1087
Query: 668 YRNPGLHF-GDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFV 726
+NP H GD+ V A + L V + FP +GPR DE+AG D DGD Y +
Sbjct: 1088 TKNP-CHVPGDVRVFDAVWQPALAHLVDV----VVFPQHGPRPHPDEMAGSDLDGDEYSI 1142
Query: 727 SRNPELLKHFKESERWMSTSKNLSANK 753
+ E+L + E +S +K
Sbjct: 1143 IWDQEMLLDYNEEAMVFPSSSAAEEDK 1169
Score = 49 (22.3 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 824 ALDAPKKSGIKVEVPEDLK-VEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAV 877
A+D PK SG+ E + E P YM + ST + G ++ + E V
Sbjct: 1220 AVDFPK-SGVPAEPLSSFEQCEMTPDYMMSGGKPMYYSTRLNGQLHRKARKVEEV 1273
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.134 0.392 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1015 989 0.00099 122 3 11 22 0.40 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 15
No. of states in DFA: 627 (67 KB)
Total size of DFA: 471 KB (2221 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 86.73u 0.10s 86.83t Elapsed: 00:00:06
Total cpu time: 86.74u 0.10s 86.84t Elapsed: 00:00:06
Start: Mon May 20 19:41:31 2013 End: Mon May 20 19:41:37 2013