BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001771
(1015 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297738765|emb|CBI28010.3| unnamed protein product [Vitis vinifera]
Length = 929
Score = 1035 bits (2675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 559/1004 (55%), Positives = 706/1004 (70%), Gaps = 82/1004 (8%)
Query: 13 VSLPLSVEQLISKIYTEQNKLPPDDGARRSLASLGEDAALDVLRTIASDKIKYSFSGYIN 72
VSLP SVEQ++ +I TEQ + PP+ RR+LASLGE++ L++LR I+ KI+ + S IN
Sbjct: 3 VSLPHSVEQMLQRICTEQQQPPPEAHTRRNLASLGEESTLELLRKISHLKIR-NLSALIN 61
Query: 73 YLVKKRNNNGSPLKRVCFSPSSPQQNRSPVTVTTVRLLNLPQGTDYVVKQSPVADQQPRG 132
Y+V K + Q + + + T L++ P
Sbjct: 62 YMVGK----------------AAQGDAASHSPTPKHLISSP------------------- 86
Query: 133 SPMSSISHAMRHRASIPQYVALGELEFRKAFLILSYIGENSLEEVITADEIRGMRDLQMA 192
SS R +AS PQ VALGELEFRKAFLILSYIG+ E++++A+EI +++L M
Sbjct: 87 ---SSTPKKARRQASSPQLVALGELEFRKAFLILSYIGDKRPEDLLSAEEILKLKNLPMG 143
Query: 193 RFESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQR 252
FE+EVW LGRK I +EDR+ S WDS KTH+YHCH+S G+ FKGPYLN+TRTHLQR
Sbjct: 144 VFETEVWNNLGRKFIKEEDRQRSFDWDSDKTHIYHCHVSPDGSYRFKGPYLNKTRTHLQR 203
Query: 253 ELGDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEK 312
LGD+NILLVKF E++ S N DS + YN+IAREGI VGLR Y FFVFKDGGKEEK
Sbjct: 204 VLGDENILLVKFAEDVTDRSSLNCSTDSNASYNKIAREGIFVGLRQYRFFVFKDGGKEEK 263
Query: 313 KKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSL 372
KK+P TS VKCYFV MESSA LSGKTVHEAR +FMH VSSVA YM+R SL
Sbjct: 264 KKNP-TSSVKCYFVFMESSA---------LSGKTVHEARCIFMHAHMVSSVAKYMARFSL 313
Query: 373 ILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVY-KDGEALIHTDGTGFISEDLALKCPT 431
ILSKT+KL+VD S +NI+RI+DEP RD+DG+VVY +D + LI TDGTGFISEDLAL+CP
Sbjct: 314 ILSKTVKLDVDLSTVNIQRIDDEPGRDEDGHVVYDEDWKPLILTDGTGFISEDLALRCPN 373
Query: 432 YVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLL 491
+ + K N+ +++ PLL+Q RLF NG AVKGTLLL
Sbjct: 374 NLCRGKYMNNGNSD-------------------------PLLIQCRLFNNGCAVKGTLLL 408
Query: 492 NKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGV 551
N+KLPP+TIQIRPSMIKV+ D LSD QT NS+E+ TSNQPR++YLS+ LIALLSYGGV
Sbjct: 409 NRKLPPRTIQIRPSMIKVETDPKLSDTQTVNSVEINGTSNQPRRSYLSKYLIALLSYGGV 468
Query: 552 PEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHR 611
P +F+++L++AL+DA V S+KR AL+VS +G MD D RMILSGI +DEP+L H
Sbjct: 469 PNEYFMNLLKDALEDAPSVQSSKRAALRVSLRFGEMD-DSIVTRMILSGIPIDEPFLHHC 527
Query: 612 LSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEKVLVYRNP 671
LS ++ EE+K L+ GKLPV + +YLMGT DPTG LKS+EVCIIL GQV +VLVY++P
Sbjct: 528 LSFMVNEERKGLRVGKLPVNDCFYLMGTADPTGTLKSDEVCIILDHGQVQG-RVLVYKHP 586
Query: 672 GLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPE 731
GLHFGDIHVL ATYV+ LE+FVG +KYAIFFP GPRSLADE+A DFDGDMY+VSRN +
Sbjct: 587 GLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLADEMANSDFDGDMYWVSRNQQ 646
Query: 732 LLKHFKESERWM-STSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQ 790
LL++F+ SE WM S +KR DFS +ELE ELF+LFL TRF S+A +AAD W
Sbjct: 647 LLQYFRASEPWMRKRSTRHVPSKRPTDFSPDELEHELFQLFLTTRFQTSSAIGMAADNWL 706
Query: 791 AVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYM 850
MDR LTL D+ ++EK +K ML L +IYYDALDAP KSG+KV V ++LK EKFP +M
Sbjct: 707 VFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAP-KSGMKVNVSKELKAEKFPHFM 765
Query: 851 RRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCFD-DGVPEACMTKWKGYYDQY 909
R+ S+ STS+LG IY+ V+S++ ++S EIW+LP F+ D VP+AC+ WK YDQY
Sbjct: 766 GRES--SYHSTSILGQIYDAVESFQPENQSTKEIWRLPLFNIDAVPQACLRSWKDRYDQY 823
Query: 910 RWEMKEAIDKCTVEREEAAELVIEKYKQILYGAAEFEQSTRTLEEIYNEALAIYNITYDL 969
R EM A+ ++E A VI KYKQILYGAAEFE+S R LE+I++EALAIY++TY+
Sbjct: 824 RSEMAAALQHGGETKDEYAAEVINKYKQILYGAAEFEESPRNLEDIFDEALAIYHVTYEF 883
Query: 970 AASRRQVSYCSFAWRVAGSALRKFYARRQGDRSMLCSASVLREI 1013
+ +VSYC+F WRVAG AL K Y + G++SM+C SVLR++
Sbjct: 884 VINGARVSYCNFPWRVAGRALCKLYTVKLGEKSMVCVPSVLRQV 927
>gi|225445110|ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
vinifera]
Length = 943
Score = 1030 bits (2663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 565/1012 (55%), Positives = 710/1012 (70%), Gaps = 84/1012 (8%)
Query: 13 VSLPLSVEQLISKIYTEQNKLPPDDGARRSLASLGEDAALDVLRTIASDKIKYSFSGYIN 72
VSLP SVEQ++ +I TEQ + PP+ RR+LASLGE++ L++LR I+ KI+ + S IN
Sbjct: 3 VSLPHSVEQMLQRICTEQQQPPPEAHTRRNLASLGEESTLELLRKISHLKIR-NLSALIN 61
Query: 73 YLVKKRNNNGSPLKRVCFSPSSPQQNRSPVTVTTVRLLNLPQGTDYVVKQSPVADQQPRG 132
Y+V K + Q + + + T L++ P
Sbjct: 62 YMVGK----------------AAQGDAASHSPTPKHLISSP------------------- 86
Query: 133 SPMSSISHAMRHRASIPQYVALGELEFRKAFLILSYIGENSLEEVITADEIRGMRDLQMA 192
SS R +AS PQ VALGELEFRKAFLILSYIGE E++++A+EI +++L M
Sbjct: 87 ---SSTPKKARRQASSPQLVALGELEFRKAFLILSYIGELRPEDLLSAEEILKLKNLPMG 143
Query: 193 RFESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFK--------GPYLN 244
FE+EVW LGRK I +EDR+ S WDS KTH+YHCH+S G+ FK GPYLN
Sbjct: 144 VFETEVWNNLGRKFIKEEDRQRSFDWDSDKTHIYHCHVSPDGSYRFKVCISSSLNGPYLN 203
Query: 245 QTRTHLQRELGDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVF 304
+TRTHLQR LGD+NILLVKF E++ S N DS + YN+IAREGI VGLR Y FFVF
Sbjct: 204 KTRTHLQRVLGDENILLVKFAEDVTDRSSLNCSTDSNASYNKIAREGIFVGLRQYRFFVF 263
Query: 305 KDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVA 364
KDGGKEEKKK+P TS VKCYFV MESSA LSGKTVHEAR +FMH VSSVA
Sbjct: 264 KDGGKEEKKKNP-TSSVKCYFVFMESSA---------LSGKTVHEARCIFMHAHMVSSVA 313
Query: 365 NYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVY-KDGEALIHTDGTGFISE 423
YM+R SLILSKT+KL+VD S +NI+RI+DEP RD+DG+VVY +D + LI TDGTGFISE
Sbjct: 314 KYMARFSLILSKTVKLDVDLSTVNIQRIDDEPGRDEDGHVVYDEDWKPLILTDGTGFISE 373
Query: 424 DLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGT 483
DLAL+CP + + K N+ + SDV +S Y PLL+Q RLF NG
Sbjct: 374 DLALRCPNNLCRGKYMNNGN--------------SDVC--DSRY---PLLIQCRLFNNGC 414
Query: 484 AVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLI 543
AVKGTLLLN+KLPP+TIQIRPSMIKV+ D LSD QT NS+E+ TSNQPR++YLS+ LI
Sbjct: 415 AVKGTLLLNRKLPPRTIQIRPSMIKVETDPKLSDTQTVNSVEINGTSNQPRRSYLSKYLI 474
Query: 544 ALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISL 603
ALLSYGGVP +F+++L++AL+DA V S+KR AL+VS +G MD D RMILSGI +
Sbjct: 475 ALLSYGGVPNEYFMNLLKDALEDAPSVQSSKRAALRVSLRFGEMD-DSIVTRMILSGIPI 533
Query: 604 DEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWE 663
DEP+L H LS ++ EE+K L+ GKLPV + +YLMGT DPTG LKS+EVCIIL GQV
Sbjct: 534 DEPFLHHCLSFMVNEERKGLRVGKLPVNDCFYLMGTADPTGTLKSDEVCIILDHGQVQG- 592
Query: 664 KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDM 723
+VLVY++PGLHFGDIHVL ATYV+ LE+FVG +KYAIFFP GPRSLADE+A DFDGDM
Sbjct: 593 RVLVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLADEMANSDFDGDM 652
Query: 724 YFVSRNPELLKHFKESERWM-STSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAK 782
Y+VSRN +LL++F+ SE WM S +KR DFS +ELE ELF+LFL TRF S+A
Sbjct: 653 YWVSRNQQLLQYFRASEPWMRKRSTRHVPSKRPTDFSPDELEHELFQLFLTTRFQTSSAI 712
Query: 783 SLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLK 842
+AAD W MDR LTL D+ ++EK +K ML L +IYYDALDAP KSG+KV V ++LK
Sbjct: 713 GMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAP-KSGMKVNVSKELK 771
Query: 843 VEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCFD-DGVPEACMTK 901
EKFP +M R+ S+ STS+LG IY+ V+S++ ++S EIW+LP F+ D VP+AC+
Sbjct: 772 AEKFPHFMGRES--SYHSTSILGQIYDAVESFQPENQSTKEIWRLPLFNIDAVPQACLRS 829
Query: 902 WKGYYDQYRWEMKEAIDKCTVEREEAAELVIEKYKQILYGAAEFEQSTRTLEEIYNEALA 961
WK YDQYR EM A+ ++E A VI KYKQILYGAAEFE+S R LE+I++EALA
Sbjct: 830 WKDRYDQYRSEMAAALQHGGETKDEYAAEVINKYKQILYGAAEFEESPRNLEDIFDEALA 889
Query: 962 IYNITYDLAASRRQVSYCSFAWRVAGSALRKFYARRQGDRSMLCSASVLREI 1013
IY++TY+ + +VSYC+F WRVAG AL K Y + G++SM+C SVLR++
Sbjct: 890 IYHVTYEFVINGARVSYCNFPWRVAGRALCKLYTVKLGEKSMVCVPSVLRQV 941
>gi|449436040|ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
sativus]
Length = 1056
Score = 962 bits (2486), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 536/1027 (52%), Positives = 689/1027 (67%), Gaps = 56/1027 (5%)
Query: 13 VSLPLSVEQLISKIYTEQNKLPPDDGARRSLASLGEDAALDVLRTIASDKIKYSFSGYIN 72
VSLP SVEQ + I ++ PD R+LAS+GE AALD L I+ ++ + SG+I
Sbjct: 58 VSLPPSVEQFLLHICKLHDQPLPDTEVLRALASVGEVAALDALHKISCSTVR-NLSGFIL 116
Query: 73 YLVKKRNNNGSPLKRVCFSPSSPQQNRSPVTVTTVRLLNLPQGTDYVVKQSP-------- 124
+LV+K + K V SP ++SP + V L P + QSP
Sbjct: 117 HLVRKDSCASPQNKMVRVSP-----HQSPSSSCPVSQLQSPSTCSVSLHQSPSTFSVCSG 171
Query: 125 --------VADQQPRGSPMSSISHAMRHRASIPQYVALGELEFRKAFLILSYIGENSLEE 176
+ Q P S S ++ RA I Q+VALGELEFRK L+
Sbjct: 172 QGLGTAENASLQPPTPEKSGSFSSSVLDRARISQFVALGELEFRKITLL----------- 220
Query: 177 VITADEIRGMRDLQMARFESEVWEKLGRKNISQEDRRMS-----LKWDSGKTHMYHCHIS 231
R + + E W +++ + S + WD KTH+YHCH++
Sbjct: 221 --------KKRPWLLYGNQVERWLGWELVSVTHSESLPSYLVQYVDWDRRKTHIYHCHVA 272
Query: 232 TKGNCTFKGPYLNQTRTHLQRELGDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIAREG 291
G+C FKGP+LN T+THLQR LGDDN+L+VKF E+ SN+ S+ Y++IAR+G
Sbjct: 273 LDGSCRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTPLSNHSGGSFYAYSKIARDG 332
Query: 292 ILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEAR 351
IL+GLR YHFFVFKDGGKEEKKK+P+TS VKCYFVRMES A+ID Y LS +TV EAR
Sbjct: 333 ILLGLRRYHFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYIDKIEPYKLSNRTVFEAR 392
Query: 352 YMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEA 411
+FMH VSS+A+YM+R SLILSKT+ L++D S +N++RI D PC+D GNV+Y+DG+
Sbjct: 393 SLFMHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRIGDIPCKDIYGNVIYRDGKP 452
Query: 412 LIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYG--- 468
LIHTDGTGFISEDLAL+CP V+K + +D + R F + + G
Sbjct: 453 LIHTDGTGFISEDLALECPMNVFKGQAKHDADLKAIWQRIPAFEGFQNKTLQLTLPGLEL 512
Query: 469 -EPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVV 527
EPPLL+Q RLFYNG AVKGT LLNK+LPP+TIQIR SMIKV+ D DL + +T NSLE+V
Sbjct: 513 REPPLLIQFRLFYNGLAVKGTFLLNKQLPPRTIQIRDSMIKVEIDPDLENFETENSLELV 572
Query: 528 KTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGM 587
TSN P++T+LSRNLIALL+YGGVP +F++IL +AL D +GVFS+KR AL+VS N G M
Sbjct: 573 GTSNPPKRTFLSRNLIALLNYGGVPREYFMNILVDALKDVQGVFSSKRAALRVSINNGEM 632
Query: 588 DYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILK 647
D DF ARMIL+GI LDE YLQ+RLS+L+KEEKKSL++G+L V E YYLMGTVDPT L+
Sbjct: 633 D-DFLVARMILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHVPECYYLMGTVDPTFTLE 691
Query: 648 SNEVCIILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGP 707
S EVC+IL +GQ++ KVLVYRNPGLHFGDIHVL A YV++L VG +KYAIFF GP
Sbjct: 692 SGEVCVILYNGQIN-GKVLVYRNPGLHFGDIHVLTAKYVEKLVPVVGNAKYAIFFSSKGP 750
Query: 708 RSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWM-STSKNLSANKRLIDFSLEELESE 766
RS+ADEIAGGDFDGDMY+VSRN +LL++F+ E W S S + NK+ +FS +ELE+E
Sbjct: 751 RSVADEIAGGDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNKKPKEFSADELENE 810
Query: 767 LFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALD 826
LFKLFL+TRF PS AKS+AAD W A+MD+FL LG+E EE+ ++ +L+LINIYYDALD
Sbjct: 811 LFKLFLSTRFQPSYAKSVAADNWLALMDQFLMLGEERKEERNCIRAKILQLINIYYDALD 870
Query: 827 APKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWK 886
APKK G K+EVP+ LK P +M R ++ S+ STS+LG I++T Y+ ++ E+ K
Sbjct: 871 APKKGGKKIEVPKHLKAGTLPHFMERGKN-SYVSTSILGQIFDTANMYQEEVPNI-EVQK 928
Query: 887 LPCFDDGVPEACMTKWKGYYDQYRWEMKEAIDKCTVEREEAAELVIEKYKQILYGAAEFE 946
LPCF++ +PE KWK Y+ YR +M +A+ + AAE I+KYK+ILYGA E E
Sbjct: 929 LPCFEEELPEYIFMKWKFLYELYRKDMVDAMQLDPDAKNIAAEATIKKYKEILYGAEELE 988
Query: 947 QSTRTLEEIYNEALAIYNITYDLAASRRQVSYCSFAWRVAGSALRKFYARRQGDRSMLCS 1006
S R+ EE+Y EALAIY +TYD A S R V C FAW+VAGSAL K YA + +RS C
Sbjct: 989 GSPRSNEEVYQEALAIYQVTYDHAMS-RSVRNCGFAWKVAGSALFKLYAIKHSERSFHCL 1047
Query: 1007 ASVLREI 1013
SV+REI
Sbjct: 1048 PSVMREI 1054
>gi|42569164|ref|NP_179581.2| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
gi|322967566|sp|O82190.2|RDR3_ARATH RecName: Full=Probable RNA-dependent RNA polymerase 3; Short=AtRDRP3;
AltName: Full=RNA-directed RNA polymerase 3
gi|330251848|gb|AEC06942.1| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
Length = 992
Score = 947 bits (2449), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/1022 (52%), Positives = 692/1022 (67%), Gaps = 51/1022 (4%)
Query: 7 VSQQGVVSLPLSVEQLISKIYTEQN-KLPPDDGARRSLASLGEDAALDVLRTIASDKIKY 65
VS + ++L SVE ++ KIY + N +LP RR L+S+ E+ AL+ LR + +
Sbjct: 9 VSPRSEIALLGSVETMLEKIYEKHNHRLPISVETRRKLSSISEELALETLRKVFNKPYLK 68
Query: 66 SFSGYINYLVKKRNN-NGSPLKRVCFSPSSPQQNRSPVTVTTVRLLNLPQGTDYVVKQSP 124
+ G I Y VK +GSP R+ S Q R+P K+S
Sbjct: 69 TLDGLIMYFVKGTVTVDGSP--RLSPGESPVQSPRTPA------------------KKSC 108
Query: 125 VADQQPRGSPMSSISHAMRHRAS-----IPQYVALGELEFRKAFLILSYIGENSL-EEVI 178
A Q + M+ + IP +ALGELEF+KAFL+LSYIG SL EEVI
Sbjct: 109 RASQDVSLDLETPSPKFMKREENGGSKYIPPLLALGELEFKKAFLLLSYIGGESLVEEVI 168
Query: 179 TADEIRGMRDLQMARFESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTF 238
+ D+IR +DL M +E+ VW +LG++ S ++RR L+ DSG TH Y CH++T G+ F
Sbjct: 169 SGDQIRKWKDLPMVSYEAAVWNRLGQRYCSPKERRRPLEGDSGMTHYYQCHVATDGSYKF 228
Query: 239 KGPYLNQTRTHLQRELGDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIAREGILVGLRC 298
KG L T THL + LGDDN+L VKFD+ LG ND YS Y IA+ GI+VGLR
Sbjct: 229 KGHLLENTGTHLHKVLGDDNVLTVKFDKVLG---VETYCNDLYSTYKGIAKNGIMVGLRR 285
Query: 299 YHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVR 358
Y FFVFKDGGKEEKKKD ST VKCYF+R +S+A IDM YI +GK++HEAR FMHV
Sbjct: 286 YRFFVFKDGGKEEKKKDVSTKGVKCYFIRTDSTASIDMQNPYIFAGKSMHEARMHFMHVN 345
Query: 359 TVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDG-NVVYKDGEALIHTDG 417
T+SS+ NYMSR SLILSKT LEVD + I E+I+D C D+D +V+ K+G+ IH+DG
Sbjct: 346 TLSSLPNYMSRFSLILSKTKTLEVDMTGITFEQIDDIHCHDQDDKDVLDKNGKPCIHSDG 405
Query: 418 TGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVR 477
TG+ISEDLA CP ++K K + RS + + NF EPPLL+Q R
Sbjct: 406 TGYISEDLARMCPVNIFKGK------SMRSNNIQSKNLNFEGQGPCGQ---EPPLLIQFR 456
Query: 478 LFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTY 537
+FYNG AVKGT L NKKLPP+T+Q+RPSMIKV DR LS+ TFNSLEVV TSN PRK
Sbjct: 457 IFYNGYAVKGTFLTNKKLPPRTVQVRPSMIKVYEDRTLSNLSTFNSLEVVTTSNPPRKAR 516
Query: 538 LSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMI 597
LSRNL+ALLSYGGVP FFL+ILRN L++++ +F ++R A K + NYG Y +A MI
Sbjct: 517 LSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAINYGDDQY---TADMI 573
Query: 598 LSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKD 657
L GI LDEPYL+ RLS L+K E+ +L+AG+ P+ ESYY+MGTVDPTG LK NE+C+IL
Sbjct: 574 LVGIPLDEPYLKDRLSYLLKTERNALKAGRFPIDESYYIMGTVDPTGELKENEICVILHS 633
Query: 658 GQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGG 717
GQ+S + VLVYRNPGLHFGDIHVLKATYVK LED+VG +K+A+FFP GPRSL DEIAGG
Sbjct: 634 GQISGD-VLVYRNPGLHFGDIHVLKATYVKALEDYVGNAKFAVFFPQKGPRSLGDEIAGG 692
Query: 718 DFDGDMYFVSRNPELLKHFKESERWMSTSK--NLSANKRLIDFSLEELESELFKLFLNTR 775
DFDGDMYF+SRNP+LL+HFK SE W+S+SK + ++ + S EELE ELFK+FL R
Sbjct: 693 DFDGDMYFISRNPKLLEHFKPSEPWVSSSKPSKIYCGRKPSELSEEELEEELFKMFLKAR 752
Query: 776 FCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKV 835
FC + +AADCW +MD FLTLGDESA+EK K+N+L+LI+IYYDALDAPKK G KV
Sbjct: 753 FCKRDVIGMAADCWLGIMDPFLTLGDESAKEKYERKKNILKLIDIYYDALDAPKK-GAKV 811
Query: 836 EVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCF-DDGV 894
++P DL+++ FP YM RD F STS+LG I++TV S+ A + +EI KL F D+ V
Sbjct: 812 DLPPDLEIKNFPHYMERDPKRDFRSTSILGLIFDTVDSHNAEEPPPSEISKLWYFEDEPV 871
Query: 895 PEACMTKWKGYYDQYRWEMKEA-IDKCTVEREEAAELVIEKYKQILYGAAEFEQSTRTLE 953
P++ M K+ +Y+ YR EM +A ++ V+R + VI++YKQ YGAA FE S ++LE
Sbjct: 872 PKSHMDKFTSWYENYRSEMSQAMMETDKVKRNQLTNEVIQRYKQDFYGAAGFEDSNKSLE 931
Query: 954 EIYNEALAIYNITYDLAASRRQVSYCSFAWRVAGSALRKFYARRQGDRSMLCSASVLREI 1013
E+Y +ALA+YN+ YD A + V+ C+FAW VAG L KFY ++ D+S++ S SVL+++
Sbjct: 932 ELYPQALALYNVVYDYAI-QEGVAKCTFAWNVAGPVLCKFYLKKTKDKSVVASTSVLKKL 990
Query: 1014 CG 1015
G
Sbjct: 991 LG 992
>gi|297832162|ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329803|gb|EFH60222.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 981
Score = 920 bits (2377), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 519/1020 (50%), Positives = 676/1020 (66%), Gaps = 53/1020 (5%)
Query: 5 AVVSQQGVVSLPLSVEQLISKIYTEQNKLPPDDGARRSLASLGEDAALDVLRTIASDK-- 62
S + ++L +E + IY + N P +D R+ L+S+ E+ +++R + S +
Sbjct: 6 GAASTRSRIALSGRIETALENIYRKFNLTPINDETRQRLSSIPENLGFELVRNVFSLQAG 65
Query: 63 IKYSFSGYINYLVKKRNN-NGSPLKRVCFSPSSPQQNRSPVTVTTVRLLNLPQGTDYVVK 121
+ Y+ +I V + N G P R+ S SP +RSP R+L D
Sbjct: 66 LIYNLDSFIVSKVNQAVNFTGYP--RLS-SGVSPANSRSPSGRHVCRVLQEEMSVD---S 119
Query: 122 QSPVADQQPRGSPMSSISHAMRHRASIPQYVALGELEFRKAFLILSYIGENSLEEVITAD 181
+P SP S S IPQ VALGELEF+KAFL+LSYI L +V TAD
Sbjct: 120 DAP--------SPKSLKSEENGGSLHIPQLVALGELEFKKAFLLLSYIPGQQLGQVTTAD 171
Query: 182 EIRGMRDLQMARFESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGP 241
EIR +DL M +E+ VW++LGR+ Q DRRM L+WDSGKTH Y CH++ G+ TFKGP
Sbjct: 172 EIRLWKDLPMVAYEAAVWDRLGRRYCPQTDRRM-LQWDSGKTHYYQCHVAPDGSYTFKGP 230
Query: 242 YLNQTRTHLQRELGDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIAREGILVGLRCYHF 301
L T THL + LGD+N+L VKF + SS ND Y Y EIA+ GI++GLR Y F
Sbjct: 231 LLEHTGTHLHKVLGDENVLTVKFADV--PKNSSTYSNDRYFTYKEIAKNGIMIGLRRYQF 288
Query: 302 FVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVS 361
FVFKDGGKEEKKKD ST VKCYF+R +S+A DM YI +GK++HEAR FMHV
Sbjct: 289 FVFKDGGKEEKKKDLSTKKVKCYFIRTDSTASCDMENPYIFTGKSIHEARMHFMHVHRAP 348
Query: 362 SVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDG-NVVYKDGEALIHTDGTGF 420
++ANYM+R SLILSKT LEVD + I + I+D C D+DG +V+ K+ + IH+DGTG+
Sbjct: 349 TLANYMARFSLILSKTKTLEVDMTGITFDPIDDIHCHDQDGKDVLDKNKKPCIHSDGTGY 408
Query: 421 ISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFY 480
ISEDLA CP ++K KC ++ + + ++ +PPLL+Q R+FY
Sbjct: 409 ISEDLARMCPLNIFKGKCLRSENIQEACNQ------------------DPPLLIQFRMFY 450
Query: 481 NGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSR 540
+G AVKGT LLNKKL P+T+Q+RPSMIKV D LS+ TFN+LEVV TSN PR+T LS+
Sbjct: 451 DGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPRRTKLSK 510
Query: 541 NLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSG 600
NL+ALLSYGG+P FFLDIL N L++++ +F NK AL V+ NYG MD D +A+MIL G
Sbjct: 511 NLVALLSYGGIPNEFFLDILLNTLEESKSIFYNKHAALNVALNYGEMD-DQNAAQMILVG 569
Query: 601 ISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQV 660
I LDEP+L++ LSIL+K EK L+AG+LPVTESYYLMGTVDPTG LK +EVC+IL+ GQ+
Sbjct: 570 IPLDEPHLKNHLSILLKTEKNDLKAGRLPVTESYYLMGTVDPTGELKEDEVCVILESGQI 629
Query: 661 SWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFD 720
S E VLVYRNPGLHFGDIH+LKATYVK LE++VG SKYA+FFP GPRSL DEIAGGDFD
Sbjct: 630 SGE-VLVYRNPGLHFGDIHILKATYVKALEEYVGNSKYAVFFPQKGPRSLGDEIAGGDFD 688
Query: 721 GDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTR--FCP 778
GDMYF+SRNPELL+HFK SE W+S + +N L E E + + F
Sbjct: 689 GDMYFISRNPELLEHFKPSEPWVSLTPPSKSNSGRAPSQLSPEELEEELFEMFLKAGFHA 748
Query: 779 SNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVP 838
SN +AAD W +MDR L LGDE AEEKA MK+ ML+LI+IYYDALDAPKK G KV +P
Sbjct: 749 SNVIGIAADSWLTIMDRLLILGDERAEEKAEMKKKMLKLIDIYYDALDAPKK-GDKVYLP 807
Query: 839 EDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRS-VTEIWKLPCF-DDGVPE 896
+L+ + FP YM R++ F+STS+LG IY+ VKS + + +EI KLPCF D+ V E
Sbjct: 808 NELRPDIFPHYMEREK--KFKSTSILGLIYDFVKSQTTEEPTPSSEISKLPCFEDEPVSE 865
Query: 897 ACMTKWKGYYDQYRWEMKEAIDKCTVEREEAAELVIEKYKQILYGAAEFEQSTRTLEEIY 956
M K + +YD YR EM +A+ +++E+A VI++YKQ YGAA FE S ++LEE+Y
Sbjct: 866 FHMEKCRRWYDNYRSEMTQAM---KTDKDESANEVIQRYKQEFYGAAGFEDSKKSLEELY 922
Query: 957 NEALAIYNITYDLAASRRQVSYCSFAWRVAGSALRKFY-ARRQGDRSMLCSASVLREICG 1015
+AL +Y I YD A VS C F W+VAG L +FY ++ ++S++C+ SVL+E+ G
Sbjct: 923 PQALTLYKIVYDYAI-HAGVSKCGFVWKVAGPVLCRFYLMKKMQEKSLVCAPSVLKELWG 981
>gi|42569168|ref|NP_179583.3| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
gi|322967572|sp|O82188.2|RDR5_ARATH RecName: Full=Probable RNA-dependent RNA polymerase 5; Short=AtRDRP5;
AltName: Full=RNA-directed RNA polymerase 5
gi|330251850|gb|AEC06944.1| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
Length = 977
Score = 907 bits (2343), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/1022 (51%), Positives = 680/1022 (66%), Gaps = 73/1022 (7%)
Query: 13 VSLPLSVEQLISKIYTEQNKLPPDDGARRSLASLGEDAALDVLRTIASDK--IKYSFSGY 70
++L +E + IY + N P +D R+ L+S+ E+ +++R + S + + Y+ +
Sbjct: 10 IALSGRIETALENIYRKHNLTPINDETRQRLSSIPENLGFELVRKVFSLQAGLIYNLDSF 69
Query: 71 INYLVKKRNN----NGSPLKRVCFSPSSPQQNRSPVTVTTVRLLNLPQGTDYVVKQSPVA 126
I V K N G P SPS +R V Q ++
Sbjct: 70 I---VSKVNQAVSFTGYPQPANSLSPSGRHVSR--------------------VLQEEMS 106
Query: 127 DQQPRGSPMSSISHAMRHRASIPQYVALGELEFRKAFLILSYIGENSLEEVITADEIRGM 186
SP S S IPQ VALGELEF+K FL+LSYI + +VITADEIR
Sbjct: 107 VDSDAPSPKSLKSEDKGGSLHIPQLVALGELEFKKVFLLLSYIPGQHVGQVITADEIRLW 166
Query: 187 RDLQMARFESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFK------G 240
+DL M +E+ VW++LGR Q+DRRM L+WDSGKTH Y C+++ G+ TFK G
Sbjct: 167 KDLPMVEYEAAVWDRLGRHYCPQKDRRM-LQWDSGKTHYYQCNVAPNGSYTFKVLSALQG 225
Query: 241 PYLNQTRTHLQRELGDDNILLVKFDEELGGHRSSNNWN-DSYSKYNEIAREGILVGLRCY 299
P L T THL + LGDDN+L VKF + +SS+ ++ D Y Y IA+ GI++GLR Y
Sbjct: 226 PLLEHTGTHLHKVLGDDNVLTVKFADV---QKSSSTYSIDHYFTYKGIAKNGIMIGLRRY 282
Query: 300 HFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRT 359
FFVFKDGGKEEKKKD ST VKCYF+R +S+AF DM YIL+GK+++EAR FMHV
Sbjct: 283 QFFVFKDGGKEEKKKDLSTKKVKCYFIRTDSTAFYDMQNPYILTGKSIYEARMHFMHVHR 342
Query: 360 VSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDG-NVVYKDGEALIHTDGT 418
++ANYM+R SLILSKT LEVD + I ++I+D C D+DG +V+ K+ + IH+DGT
Sbjct: 343 APTLANYMARFSLILSKTKTLEVDMTGITFDQIDDIHCHDQDGKDVLDKNKKPCIHSDGT 402
Query: 419 GFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRL 478
G+ISEDLA CP ++K KC +S + E+ Y +PPLL+Q R+
Sbjct: 403 GYISEDLARMCPLNIFKGKCLRSESIQ------------------EACYQDPPLLIQFRM 444
Query: 479 FYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYL 538
FY+G AVKGT LLNKKL P+T+Q+RPSMIKV D LS+ TFN+LEVV TSN P++T L
Sbjct: 445 FYDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPKRTKL 504
Query: 539 SRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMIL 598
S+NL+ALLSYGG+P FFLDIL N L++++ +F NKR AL + NYG MD D +A+MIL
Sbjct: 505 SKNLVALLSYGGIPNEFFLDILLNTLEESKSIFYNKRAALNAALNYGEMD-DQNAAQMIL 563
Query: 599 SGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDG 658
GI LDEP+L++ LSIL+K EK L+AGKLPVTESYYLMGTVDPTG LK +EVC+IL+ G
Sbjct: 564 VGIPLDEPHLKNYLSILLKTEKNDLKAGKLPVTESYYLMGTVDPTGALKEDEVCVILESG 623
Query: 659 QVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGD 718
Q+S E VLVYRNPGLHFGDIH+LKATYVK LE++VG SK+A+FFP GPRSL DEIAGGD
Sbjct: 624 QISGE-VLVYRNPGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGD 682
Query: 719 FDGDMYFVSRNPELLKHFKESERWMSTSKNLSAN--KRLIDFSLEELESELFKLFLNTRF 776
FDGDMYF+SRNPELL++FK SE W+S + +N + S EELE ELF++FL F
Sbjct: 683 FDGDMYFISRNPELLENFKPSEPWVSLTPPSKSNSGRAPSQLSPEELEEELFEMFLTAGF 742
Query: 777 CPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVE 836
SN +AAD W +MDRFL LGD+ AEEKA MK+ ML LI+IYYDALDAPKK G KV
Sbjct: 743 HASNVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKK-GDKVY 801
Query: 837 VPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRS-VTEIWKLPCF-DDGV 894
+P LK + FP YM RD+ F+STS+LG I++ VKS + S +EI KLPCF D+ V
Sbjct: 802 LPNKLKPDIFPHYMERDK--KFQSTSILGLIFDFVKSQTTEEPSPSSEISKLPCFEDEPV 859
Query: 895 PEACMTKWKGYYDQYRWEMKEAIDKCTVEREEAAELVIEKYKQILYGAAEFEQSTRTLEE 954
E M K + +YD YR EM +A+ +++E+A VI++YKQ YGAA FE S ++LEE
Sbjct: 860 SEFHMQKCRLWYDNYRTEMTQAM---KTDKDESANEVIQRYKQEFYGAAGFEDSKKSLEE 916
Query: 955 IYNEALAIYNITYDLAASRRQVSYCSFAWRVAGSALRKFYA-RRQGDRSMLCSASVLREI 1013
+Y +ALA+Y I YD A VS C F W+VAG L +FY ++ ++ ++C+ SVL+E+
Sbjct: 917 LYPQALALYKIVYDYAI-HAGVSKCRFVWKVAGPVLCRFYLNKKMQEKCLVCAPSVLKEL 975
Query: 1014 CG 1015
G
Sbjct: 976 WG 977
>gi|3687227|gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana]
Length = 966
Score = 907 bits (2343), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/1021 (50%), Positives = 673/1021 (65%), Gaps = 75/1021 (7%)
Query: 7 VSQQGVVSLPLSVEQLISKIYTEQN-KLPPDDGARRSLASLGEDAALDVLRTIASDKIKY 65
VS + ++L SVE ++ KIY + N +LP RR L+S+ E+ AL+ LR + +
Sbjct: 9 VSPRSEIALLGSVETMLEKIYEKHNHRLPISVETRRKLSSISEELALETLRKVFNKPYLK 68
Query: 66 SFSGYINYLVKKRNN-NGSPLKRVCFSPSSPQQNRSPVTVTTVRLLNLPQGTDYVVKQSP 124
+ G I Y VK +GSP R+ S Q R+P K+S
Sbjct: 69 TLDGLIMYFVKGTVTVDGSP--RLSPGESPVQSPRTPA------------------KKSC 108
Query: 125 VADQQPRGSPMSSISHAMRHRAS-----IPQYVALGELEFRKAFLILSYIGENSL-EEVI 178
A Q + M+ + IP +ALGELEF+KAFL+LSYIG SL EEVI
Sbjct: 109 RASQDVSLDLETPSPKFMKREENGGSKYIPPLLALGELEFKKAFLLLSYIGGESLVEEVI 168
Query: 179 TADEIRGMRDLQMARFESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTF 238
+ D+IR +DL M +E+ VW +LG++ S ++RR L+ DSG TH Y CH++T G+ F
Sbjct: 169 SGDQIRKWKDLPMVSYEAAVWNRLGQRYCSPKERRRPLEGDSGMTHYYQCHVATDGSYKF 228
Query: 239 KGPYLNQTRTHLQRELGDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIAREGILVGLRC 298
KG L T THL + LGDDN+L VKFD+ LG ND YS Y IA+ GI+VGLR
Sbjct: 229 KGHLLENTGTHLHKVLGDDNVLTVKFDKVLG---VETYCNDLYSTYKGIAKNGIMVGLRR 285
Query: 299 YHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVR 358
Y FFVFKDGGKEEKKKD ST VKCYF+R +S+A IDM YI +GK++HEAR FMHV
Sbjct: 286 YRFFVFKDGGKEEKKKDVSTKGVKCYFIRTDSTASIDMQNPYIFAGKSMHEARMHFMHVN 345
Query: 359 TVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGT 418
T+SS+ NYMSR S+ D +V+ K+G+ IH+DGT
Sbjct: 346 TLSSLPNYMSRYSI-------------------------DQDDKDVLDKNGKPCIHSDGT 380
Query: 419 GFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRL 478
G+ISEDLA CP ++K K + RS + + NF EPPLL+Q R+
Sbjct: 381 GYISEDLARMCPVNIFKGK------SMRSNNIQSKNLNFEGQGPCGQ---EPPLLIQFRI 431
Query: 479 FYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYL 538
FYNG AVKGT L NKKLPP+T+Q+RPSMIKV DR LS+ TFNSLEVV TSN PRK L
Sbjct: 432 FYNGYAVKGTFLTNKKLPPRTVQVRPSMIKVYEDRTLSNLSTFNSLEVVTTSNPPRKARL 491
Query: 539 SRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMIL 598
SRNL+ALLSYGGVP FFL+ILRN L++++ +F ++R A K + NYG Y +A MIL
Sbjct: 492 SRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAINYGDDQY---TADMIL 548
Query: 599 SGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDG 658
GI LDEPYL+ RLS L+K E+ +L+AG+ P+ ESYY+MGTVDPTG LK NE+C+IL G
Sbjct: 549 VGIPLDEPYLKDRLSYLLKTERNALKAGRFPIDESYYIMGTVDPTGELKENEICVILHSG 608
Query: 659 QVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGD 718
Q+S + VLVYRNPGLHFGDIHVLKATYVK LED+VG +K+A+FFP GPRSL DEIAGGD
Sbjct: 609 QISGD-VLVYRNPGLHFGDIHVLKATYVKALEDYVGNAKFAVFFPQKGPRSLGDEIAGGD 667
Query: 719 FDGDMYFVSRNPELLKHFKESERWMSTSK--NLSANKRLIDFSLEELESELFKLFLNTRF 776
FDGDMYF+SRNP+LL+HFK SE W+S+SK + ++ + S EELE ELFK+FL RF
Sbjct: 668 FDGDMYFISRNPKLLEHFKPSEPWVSSSKPSKIYCGRKPSELSEEELEEELFKMFLKARF 727
Query: 777 CPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVE 836
C + +AADCW +MD FLTLGDESA+EK K+N+L+LI+IYYDALDAPKK G KV+
Sbjct: 728 CKRDVIGMAADCWLGIMDPFLTLGDESAKEKYERKKNILKLIDIYYDALDAPKK-GAKVD 786
Query: 837 VPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCF-DDGVP 895
+P DL+++ FP YM RD F STS+LG I++TV S+ A + +EI KL F D+ VP
Sbjct: 787 LPPDLEIKNFPHYMERDPKRDFRSTSILGLIFDTVDSHNAEEPPPSEISKLWYFEDEPVP 846
Query: 896 EACMTKWKGYYDQYRWEMKEA-IDKCTVEREEAAELVIEKYKQILYGAAEFEQSTRTLEE 954
++ M K+ +Y+ YR EM +A ++ V+R + VI++YKQ YGAA FE S ++LEE
Sbjct: 847 KSHMDKFTSWYENYRSEMSQAMMETDKVKRNQLTNEVIQRYKQDFYGAAGFEDSNKSLEE 906
Query: 955 IYNEALAIYNITYDLAASRRQVSYCSFAWRVAGSALRKFYARRQGDRSMLCSASVLREIC 1014
+Y +ALA+YN+ YD A + V+ C+FAW VAG L KFY ++ D+S++ S SVL+++
Sbjct: 907 LYPQALALYNVVYDYAI-QEGVAKCTFAWNVAGPVLCKFYLKKTKDKSVVASTSVLKKLL 965
Query: 1015 G 1015
G
Sbjct: 966 G 966
>gi|356497593|ref|XP_003517644.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine max]
Length = 953
Score = 870 bits (2248), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/869 (53%), Positives = 617/869 (71%), Gaps = 17/869 (1%)
Query: 153 ALGELEFRKAFLILSYIGENSLEEVITADEIRGMRDLQMARFESEVWEKLGRKNISQEDR 212
ALGELEFRKAFLILSYIG SLE IT +IR ++DL MA+FE +WE G K I +
Sbjct: 91 ALGELEFRKAFLILSYIGRESLENCITDAKIRSLKDLPMAKFEKTIWEDFGEKCIYDQSD 150
Query: 213 RMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGDDNILLVKFDEELGGHR 272
R + W+SG+TH+Y C + GN FKGP L TRTHLQ+ LGDDN+LLVKF E+ G
Sbjct: 151 RQLVNWNSGRTHVYQCFVFPDGNLRFKGPILQSTRTHLQKTLGDDNVLLVKFAEDGSGKN 210
Query: 273 SSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSA 332
+ ++ + Y + +EGI VGLR Y FFVFKDGG EEK+KDP++S VKCYFVRM+S
Sbjct: 211 FRTHAEEANALYGKFGKEGIRVGLRLYRFFVFKDGGNEEKQKDPTSSTVKCYFVRMQSGC 270
Query: 333 FIDMGYQYILSGKTVHEARYMFMHVRT-VSSVANYMSRLSLILSKTMKLEVDFSRINIER 391
D G YILS KTV EAR +FMH + ++ YM+R SLILSKT+KL +D + +++++
Sbjct: 271 SADEGADYILSNKTVSEARTLFMHAHMLLPNLNKYMARFSLILSKTLKLNIDLTTVSVQK 330
Query: 392 IEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRK 451
I DE C+D +GN++ + + I TDGTGFIS DLAL CP VYK ++ + +
Sbjct: 331 IPDEYCKDANGNIMVDNEKPRILTDGTGFISRDLALLCPNNVYKGSNLENNCIQEINNLV 390
Query: 452 ELEANFSDVARTES-HYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVK 510
ELE + + E EPPLL+Q RLF+ G A+KGTLL+N+KLPP+TIQ+RPSMIKV+
Sbjct: 391 ELEDMSNAMGEAEQLSTHEPPLLIQCRLFHMGHAIKGTLLVNRKLPPRTIQVRPSMIKVE 450
Query: 511 ADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGV 570
D + Q+ NSLEVV TSN+P++ YLS++LIALLS+GGVP FF+D+LR+ ++DA V
Sbjct: 451 KDPSVH-MQSINSLEVVTTSNKPKRGYLSKHLIALLSFGGVPNEFFMDLLRSNMEDANHV 509
Query: 571 FSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPV 630
+SNKR+AL+ S N G D ++ +A MIL GI LDEP+L+H LS +EEKK L+ GKL +
Sbjct: 510 YSNKRSALRASINCGEKD-EYNAAEMILCGIPLDEPFLKHHLSRFAREEKKKLRGGKLYM 568
Query: 631 TESYYLMGTVDPTGILKSNEVCIILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELE 690
+ +YLMGTVDPTG LK N+VCII ++ Q+ + VLVYRNPGLHFGDIH + ATYVKELE
Sbjct: 569 PDCFYLMGTVDPTGHLKKNQVCIIHENSQIVGD-VLVYRNPGLHFGDIHKMDATYVKELE 627
Query: 691 DFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNL- 749
+VG SKY IFFP G RS+ADEIAGGDFDGD Y+VS +P+LL++F++ + W+ S L
Sbjct: 628 SYVGHSKYGIFFPRVGTRSVADEIAGGDFDGDTYWVSNHPQLLQYFRKGDPWIENSVPLD 687
Query: 750 SANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAE-EKA 808
S+ K+ +FS EELE ELF+LFL TRF PS A ++ + W A+MDR LTL + + E EK
Sbjct: 688 SSVKKPSEFSPEELEEELFRLFLKTRFQPSYAMGMSENSWMALMDRLLTLNNCTNENEKE 747
Query: 809 AMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIY 868
+KENML+LI+IYY+ALDAP KSG KV+VP DL E FP YM +D+ SF STS+LG IY
Sbjct: 748 RVKENMLKLIDIYYEALDAP-KSGRKVQVPNDLIAELFPHYMEKDK--SFTSTSILGLIY 804
Query: 869 NTVKSYEAVDRSVTEIWKLPCFDDGVPEACMTKWKGYYDQYRWEMKEAI---DKCTVERE 925
+ V+ + D V EIWKLPCFD VP +C+ KWK Y++YR +M +A+ DK + E
Sbjct: 805 DEVEIWLENDM-VGEIWKLPCFDVEVPPSCLEKWKTKYEEYRKDMTDALNLKDK-SKSHE 862
Query: 926 EAAELVIEKYKQILYGAA-EFEQSTRTLEEIYNEALAIYNITYDLAASRRQVSYCSFAWR 984
EAAE V KYK+ YG E E +++ +I+NEALA+YN++Y+ A +++V C FAW+
Sbjct: 863 EAAE-VNRKYKEEFYGPTLEMEGCLKSIGDIFNEALAVYNVSYEYAMLKKEVKRCGFAWK 921
Query: 985 VAGSALRKFYARRQGDRSMLCSASVLREI 1013
+AGSAL + Y +Q ++++ C SV+REI
Sbjct: 922 IAGSALTRLYIIKQNEKALNCDPSVVREI 950
Score = 47.8 bits (112), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%)
Query: 8 SQQGVVSLPLSVEQLISKIYTEQNKLPPDDGARRSLASLGEDAALDVLRTIASDKIKYSF 67
+ + ++ LP SVE LI I +QN+ P D R L GE+ +L +L IA+ +I+ SF
Sbjct: 6 NHRDLLILPPSVEALIESICRDQNRPPLDYSTRHRLKLQGEEQSLRILNKIAATRIRLSF 65
Query: 68 SGY 70
+G+
Sbjct: 66 AGF 68
>gi|42569166|ref|NP_179582.2| RNA-dependent RNA polymerase family protein [Arabidopsis thaliana]
gi|322967571|sp|O82189.2|RDR4_ARATH RecName: Full=Probable RNA-dependent RNA polymerase 4;
Short=AtRDRP4; AltName: Full=RNA-directed RNA polymerase
4
gi|330251849|gb|AEC06943.1| RNA-dependent RNA polymerase family protein [Arabidopsis thaliana]
Length = 927
Score = 855 bits (2209), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/960 (49%), Positives = 629/960 (65%), Gaps = 58/960 (6%)
Query: 13 VSLPLSVEQLISKIYTEQNKLPPDD-GARRSLASLGEDAALDVLRTIASDKIKYSFSGYI 71
++L SVE ++ K+Y + N PP RR L+S+ E+ AL+ LR + + + G I
Sbjct: 20 IALLGSVETMLEKVYGKHNHHPPIKVETRRRLSSISEELALETLRKVLNMPNVKTLDGII 79
Query: 72 NYLVKKRNN-NGSPLKRVCFSPSSPQQNRSPVTVTTVRLLNLPQGTDYVVKQSPVADQQP 130
Y + +GSP +S SP V+ P Q+ V+ +
Sbjct: 80 IYFLNDAVTVDGSPR---LWSGESP-----------VQFPRTPGKKSCRASQAEVSLDRE 125
Query: 131 RGSPMSSISHAMRHRASIPQYVALGELEFRKAFLILSYIGENSLEEVITADEIRGMRDLQ 190
SP I +ALGELEF+KAFL+L+Y+G SL EVI+ DEIR +DL
Sbjct: 126 DPSPKFLRGDENGESKHISLLLALGELEFKKAFLLLTYLGGKSLGEVISGDEIRQWKDLP 185
Query: 191 MARFESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHL 250
M +E VW KLG Q + RM L+ DSGKTH Y CH++ G+ KG +L T THL
Sbjct: 186 MVAYERAVWFKLG-----QNEERMQLESDSGKTHYYQCHVAPDGSYRLKGYFLENTGTHL 240
Query: 251 QRELGDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKE 310
+ LGDDN+L V+FD+ + S ++ YSKY EIA+ GI+VGLR Y FFVFKDGGK
Sbjct: 241 HKVLGDDNVLTVRFDQL---PKESTYCDNPYSKYKEIAKNGIMVGLRRYQFFVFKDGGKA 297
Query: 311 EKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRL 370
EKKK ST VKCYF+R S+A DM YILSG ++HEAR FMHV T+ S ANYM+R
Sbjct: 298 EKKKRNSTKQVKCYFIRTGSTASSDMENPYILSGMSIHEARMHFMHVHTLPSPANYMARF 357
Query: 371 SLILSKTMKLEVDFSRINIERIEDEPCRDKDGN-VVYKDGEALIHTDGTGFISEDLALKC 429
SLILSKT KLEVD + I + +I+D C D+ N V+ K+G+ IH+DGTG+ISEDLA C
Sbjct: 358 SLILSKTKKLEVDMTEITVMQIDDIHCHDQSNNDVLDKNGKPRIHSDGTGYISEDLARMC 417
Query: 430 PTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTL 489
P ++K K ++ + + + EPPLL+Q+R+F +G+AVKG
Sbjct: 418 PLNIFKGKSMRSNNIQGTCVQ------------------EPPLLIQIRMFNDGSAVKGIF 459
Query: 490 LLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYG 549
LLNK LPPQT+Q+RPSMIKV D++LS+ TFNSLEVV TSN P++ LS+NL+ALLSYG
Sbjct: 460 LLNKNLPPQTVQVRPSMIKVYKDKNLSNFSTFNSLEVVTTSNPPKRAKLSKNLVALLSYG 519
Query: 550 GVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQ 609
GVP FFLDIL N L+ + +F R A K + +YG MD D + +MI++GI LDEPYL+
Sbjct: 520 GVPNDFFLDILLNTLEKKKTIFFKVRAAGKAALHYGNMD-DKNALQMIMAGIPLDEPYLK 578
Query: 610 HRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEKVLVYR 669
H LS L+K EK L+AGKLP+ ESYYLMGTVDPTG LK +EV G + VLVYR
Sbjct: 579 HYLSKLLKLEKDDLKAGKLPIDESYYLMGTVDPTGELKEDEVS-----GLAKSQDVLVYR 633
Query: 670 NPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRN 729
NPGLHFGDIH+LKATYVK LE +VG SKY +FFP GPRSL DEIAGGDFDGDMYF+SRN
Sbjct: 634 NPGLHFGDIHILKATYVKSLEQYVGNSKYGVFFPQKGPRSLGDEIAGGDFDGDMYFISRN 693
Query: 730 PELLKHFKESERWMSTS--KNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAAD 787
P+LL+H+K SE W+S+S + ++ + S E+LE ELFK+FL T F PS+ AAD
Sbjct: 694 PKLLEHYKPSEPWVSSSPRSKIYTGRQPSELSPEQLEEELFKIFLKTGFSPSSVIGQAAD 753
Query: 788 CWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFP 847
W A+MDRFLTLGDE+ +EKA MK+ ML+L +IYYDA+DAP K+G +V +P D+KV+ FP
Sbjct: 754 SWLAIMDRFLTLGDENVKEKAEMKKKMLKLTDIYYDAIDAP-KTGTEVNLPLDVKVDLFP 812
Query: 848 CYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCF-DDGVPEACMTKWKGYY 906
YM R++ +F+STS+LG I++TV + A D + + I KL CF D+ V E M K K ++
Sbjct: 813 HYMERNK--TFKSTSILGLIFDTVDFHNAEDTTPSGISKLQCFEDEPVSEFDMEKCKLWH 870
Query: 907 DQYRWEMKEAIDKCTVEREEAAELVIEKYKQILYGAAEFEQSTRTLEEIYNEALAIYNIT 966
YR EM +A++ + +++ VI+KYKQ Y AA F++S + LEE+Y +ALA+YN+T
Sbjct: 871 KDYRKEMCQAMNS---DDDDSCNEVIQKYKQEFYSAAGFKESKKILEELYPKALALYNVT 927
>gi|3687226|gb|AAC62124.1| hypothetical protein [Arabidopsis thaliana]
Length = 905
Score = 806 bits (2083), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/944 (48%), Positives = 606/944 (64%), Gaps = 80/944 (8%)
Query: 13 VSLPLSVEQLISKIYTEQNKLPPDD-GARRSLASLGEDAALDVLRTIASDKIKYSFSGYI 71
++L SVE ++ K+Y + N PP RR L+S+ E+ AL+ LR + + + G I
Sbjct: 20 IALLGSVETMLEKVYGKHNHHPPIKVETRRRLSSISEELALETLRKVLNMPNVKTLDGII 79
Query: 72 NYLVKKRNN-NGSPLKRVCFSPSSPQQNRSPVTVTTVRLLNLPQGTDYVVKQSPVADQQP 130
Y + +GSP R+ S Q R+P G V+ +
Sbjct: 80 IYFLNDAVTVDGSP--RLWSGESPVQFPRTP-------------GKKSCRASQEVSLDRE 124
Query: 131 RGSPMSSISHAMRHRASIPQYVALGELEFRKAFLILSYIGEN------SLEEVITADEIR 184
SP I +ALGELEF+KAFL+L+Y+G + SL EVI+ DEIR
Sbjct: 125 DPSPKFLRGDENGESKHISLLLALGELEFKKAFLLLTYLGGDRLCNRKSLGEVISGDEIR 184
Query: 185 GMRDLQMARFESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLN 244
+DL M +E VW KLG Q + RM L+ DSGKTH Y CH++ G+ KG +L
Sbjct: 185 QWKDLPMVAYERAVWFKLG-----QNEERMQLESDSGKTHYYQCHVAPDGSYRLKGYFLE 239
Query: 245 QTRTHLQRELGDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVF 304
T THL + LGDDN+L V+FD+ + S ++ YSKY EIA+ GI+VGLR Y FFVF
Sbjct: 240 NTGTHLHKVLGDDNVLTVRFDQL---PKESTYCDNPYSKYKEIAKNGIMVGLRRYQFFVF 296
Query: 305 KDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVA 364
KDGGK EKKK ST VKCYF+R S+A DM YILSG ++HEAR FMHV T+ S A
Sbjct: 297 KDGGKAEKKKRNSTKQVKCYFIRTGSTASSDMENPYILSGMSIHEARMHFMHVHTLPSPA 356
Query: 365 NYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGN-VVYKDGEALIHTDGTGFISE 423
NYM+R SLILSKT KLEVD + I + +I+D C D+ N V+ K+G+ IH+DGTG+ISE
Sbjct: 357 NYMARFSLILSKTKKLEVDMTEITVMQIDDIHCHDQSNNDVLDKNGKPRIHSDGTGYISE 416
Query: 424 DLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGT 483
DLA CP ++K K ++ + + + EPPLL+Q+R+F +G+
Sbjct: 417 DLARMCPLNIFKGKSMRSNNIQGTCVQ------------------EPPLLIQIRMFNDGS 458
Query: 484 AVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLI 543
AVKG LLNK LPPQT+Q+RPSMIKV D++LS+ TFNSLEVV TSN P++ LS+NL+
Sbjct: 459 AVKGIFLLNKNLPPQTVQVRPSMIKVYKDKNLSNFSTFNSLEVVTTSNPPKRAKLSKNLV 518
Query: 544 ALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISL 603
ALLSYGGVP FFLDIL N L+ + +F R A K + +YG MD D + +MI++GI L
Sbjct: 519 ALLSYGGVPNDFFLDILLNTLEKKKTIFFKVRAAGKAALHYGNMD-DKNALQMIMAGIPL 577
Query: 604 DEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWE 663
DEPYL+H LS L+K EK L+AGKLP+ ESYYLMGTVDPTG LK +EVC+IL
Sbjct: 578 DEPYLKHYLSKLLKLEKDDLKAGKLPIDESYYLMGTVDPTGELKEDEVCVIL-------- 629
Query: 664 KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDM 723
NPGLHFGDIH+LKATYVK LE +VG SKY +FFP GPRSL DEIAGGDFDGDM
Sbjct: 630 ------NPGLHFGDIHILKATYVKSLEQYVGNSKYGVFFPQKGPRSLGDEIAGGDFDGDM 683
Query: 724 YFVSRNPELLKHFKESERWMSTS--KNLSANKRLIDFSLEELESELFKLFLNTRFCPSNA 781
YF+SRNP+LL+H+K SE W+S+S + ++ + S E+LE ELFK+FL T F PS+
Sbjct: 684 YFISRNPKLLEHYKPSEPWVSSSPRSKIYTGRQPSELSPEQLEEELFKIFLKTGFSPSSV 743
Query: 782 KSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDL 841
AAD W A+MDRFLTLGDE+ +EKA MK+ ML+L +IYYDA+DAP K+G +V +P D+
Sbjct: 744 IGQAADSWLAIMDRFLTLGDENVKEKAEMKKKMLKLTDIYYDAIDAP-KTGTEVNLPLDV 802
Query: 842 KVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRS------VTEIWKLPCF-DDGV 894
KV+ FP YM R++ +F+STS+LG I++TV + A D + ++ I KL CF D+ V
Sbjct: 803 KVDLFPHYMERNK--TFKSTSILGLIFDTVDFHNAEDTTPSALGYLSGISKLQCFEDEPV 860
Query: 895 PEACMTKWKGYYDQYRWEMKEAIDKCTVEREEAAELVIEKYKQI 938
E M K K ++ YR EM +A++ + +++ VI+KYKQ+
Sbjct: 861 SEFDMEKCKLWHKDYRKEMCQAMNS---DDDDSCNEVIQKYKQV 901
>gi|222617920|gb|EEE54052.1| hypothetical protein OsJ_00745 [Oryza sativa Japonica Group]
Length = 1243
Score = 798 bits (2061), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/963 (45%), Positives = 617/963 (64%), Gaps = 56/963 (5%)
Query: 93 SSPQQNRSPVTVTTVRLLNLPQGTDYVVKQSPV-ADQQPRGSPMSSISHAMRHRASIPQY 151
S+P++ +P +V + L V SP+ A Q + + +A+R AS PQ
Sbjct: 288 STPRRVSTPSSVQDISRLIENMAGPSVSPPSPITAMPQNPTTTCHTTDNALREAAS-PQM 346
Query: 152 VALGELEFRKAFLILSYIGENSLEEVITADEIRGMRDLQMARFESEVWEKLGRKNISQED 211
+AL EL FRK F++ +Y+ +E V++ D IR ++ L MA+FES++W G K I+ D
Sbjct: 347 LALEELGFRKIFMVFAYLASEKIENVLSVDYIRSLKFLSMAQFESQIWRTFGHKYIAASD 406
Query: 212 RRMSLKWDSGKTHMYHCHISTKGNCT---FKGPYLNQTRTHLQRELGDDNILLVKFDEEL 268
R +L D G T +YHC+++ +G+ FKGPY+ TRTHLQ+ +GDDN+L+VKF +L
Sbjct: 407 RAKNLDSDPGMTKVYHCNVAIRGDTVVKIFKGPYIENTRTHLQKVVGDDNVLVVKFMGKL 466
Query: 269 GGHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEK-------KKDPSTSPV 321
++ +++ Y+++A +GI++GLR Y FFV+KDGGKEEK K+ TSPV
Sbjct: 467 SDTKT--DFSTYCEHYHKVAEDGIVLGLRRYRFFVYKDGGKEEKLKQEKIEDKNKCTSPV 524
Query: 322 KCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLE 381
CYFVR ES +M YILSG+TV +AR +FMH+ + ++A YM+R +LILSKT+ +
Sbjct: 525 MCYFVRTESG--WNMDEPYILSGRTVGQARELFMHISSAPTLAKYMARFALILSKTITWD 582
Query: 382 VDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTND 441
D S + + RI+DEPC D+ GNVV+KD E LIHTDGTG +S DLAL CPT ++K K
Sbjct: 583 ADLSAVYVRRIKDEPCMDRHGNVVHKDQEPLIHTDGTGLVSVDLALNCPTSIFKGKFLKP 642
Query: 442 DSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQ 501
+ D E + + R S E PLLMQ RLFYNG+AVKGT+L++++LPP TI
Sbjct: 643 QGIA-TCDESETVMRPNSLKRHRSLTAEHPLLMQFRLFYNGSAVKGTVLVDRRLPPATIL 701
Query: 502 IRPSMIKVK---------------------ADRDLSDGQTFNSLEVVKTSNQPRKTYLSR 540
IRPSM+K++ A + LS Q+ NS E+V TSN+PR+T SR
Sbjct: 702 IRPSMVKIETHPELSGVRSVNSSEIVSARNAKKSLSGVQSVNSFEIVSTSNRPRRTLTSR 761
Query: 541 NLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSG 600
LI LL YGGVPE +FL++L++A++ A + +AL+++F+Y M+ D SARMILSG
Sbjct: 762 FLITLLCYGGVPEEYFLELLQSAIEGAENACYDYEDALRIAFSYADME-DSMSARMILSG 820
Query: 601 ISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQV 660
I L+E YLQHRL + ++E+K ++ GK+P+ E YYLM T DPTG L+ NEVC+IL++GQ
Sbjct: 821 IPLEESYLQHRLDFMAQQERKGIKQGKIPIDECYYLMDTTDPTGTLRPNEVCVILENGQF 880
Query: 661 SWEKVLVYRNPGLHFGDIHVLKATYVKELE-DFVGTSKYAIFFPCNGPRSLADEIAGGDF 719
S + VLVY++PGLHFGDIHVLKATY+++LE ++VG +KYAI FP +GPRSLADE+A DF
Sbjct: 881 SGD-VLVYKHPGLHFGDIHVLKATYIRDLEKEYVGYAKYAILFPISGPRSLADEMANSDF 939
Query: 720 DGDMYFVSRNPELLKHFKESERWM-STSKNLSANKRLIDFSLEELESELFKLFLNTRFCP 778
DGD+Y+VS+NP+LL+HFK SE W+ + + K+ D + +LE LF FL TRF P
Sbjct: 940 DGDIYWVSKNPKLLEHFKPSEPWVQAIKPKKTKQKKPQDCNESKLERLLFHEFLKTRFTP 999
Query: 779 SNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVP 838
S A AAD W A MDR LT + E+K ++E ML+L+++YY ALDAP K+G KV +P
Sbjct: 1000 SFALGTAADSWLAYMDRLLTDSLDEIEKK-LIEEKMLKLVDLYYLALDAP-KTGNKVNIP 1057
Query: 839 EDLKVEKFPCYMRRDESVSFESTSVLGTIYNT---VKSYEAVDRSVTEIWKLPCF-DDGV 894
DL V+++P +M R S S+ S+S+LG IY+ V+S + + + LPCF +
Sbjct: 1058 SDLMVKQYPHFMGR--SFSYHSSSILGQIYDKAEDVESLRSCNVQPIGVSLLPCFMEREA 1115
Query: 895 PEACMTKWKGYYDQYRWE----MKEAIDKCTVEREEAAELVIEKYKQILYGAAEFEQSTR 950
P A W+ Y++Y + + +DK ER + + EKYK +LY A+EFEQ+ R
Sbjct: 1116 PPAARHLWQHRYEEYLTDSTMLYRAMVDK--EERNMKFQELYEKYKHMLYDASEFEQTQR 1173
Query: 951 TLEEIYNEALAIYNITYDLAASRRQVSYCSFAWRVAGSALRKFYARRQGDRSMLCSASVL 1010
+++++EA IY I Y+ A S C FAW+VAG AL FYA + + LCS +L
Sbjct: 1174 DPDDVFSEACVIYQIVYEKARWSNDASRCGFAWKVAGRALCHFYALKNEGDTALCSLPLL 1233
Query: 1011 REI 1013
R+I
Sbjct: 1234 RKI 1236
>gi|251765119|sp|Q5QMN5.2|RDR3_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 3; Short=OsRDR3
Length = 1153
Score = 783 bits (2021), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/961 (44%), Positives = 607/961 (63%), Gaps = 83/961 (8%)
Query: 93 SSPQQNRSPVTVTTVRLLNLPQGTDYVVKQSPV-ADQQPRGSPMSSISHAMRHRASIPQY 151
S+P++ +P +V + L V SP+ A Q + + +A+R AS PQ
Sbjct: 234 STPRRVSTPSSVQDISRLIENMAGPSVSPPSPITAMPQNPTTTCHTTDNALREAAS-PQM 292
Query: 152 VALGELEFRKAFLILSYIGENSLEEVITADEIRGMRDLQMARFESEVWEKLGRKNISQED 211
+AL EL FRK F++ +Y+ +E V++ D IR ++ L MA+FES++W G K I+ D
Sbjct: 293 LALEELGFRKIFMVFAYLASEKIENVLSVDYIRSLKFLSMAQFESQIWRTFGHKYIAASD 352
Query: 212 RRMSLKWDSGKTHMYHCHISTKGNCT---FKGPYLNQTRTHLQRELGDDNILLVKFDEEL 268
R +L D G T +YHC+++ +G+ FKGPY+ TRTHLQ+ +GDDN+L+VKF +L
Sbjct: 353 RAKNLDSDPGMTKVYHCNVAIRGDTVVKIFKGPYIENTRTHLQKVVGDDNVLVVKFMGKL 412
Query: 269 GGHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEK-------KKDPSTSPV 321
++ +++ Y+++A +GI++GLR Y FFV+KDGGKEEK K+ TSPV
Sbjct: 413 SDTKT--DFSTYCEHYHKVAEDGIVLGLRRYRFFVYKDGGKEEKLKQEKIEDKNKCTSPV 470
Query: 322 KCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLE 381
CYFVR ES +M YILSG+TV +AR +FMH+ + ++A YM+R +LILSKT+ +
Sbjct: 471 MCYFVRTESG--WNMDEPYILSGRTVGQARELFMHISSAPTLAKYMARFALILSKTITWD 528
Query: 382 VDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTND 441
D S + + RI+DEPC D+ GNVV+KD E LIHTDGTG +S DLAL CPT ++K K
Sbjct: 529 ADLSAVYVRRIKDEPCMDRHGNVVHKDQEPLIHTDGTGLVSVDLALNCPTSIFKGKFLKP 588
Query: 442 DSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQ 501
PLLMQ RLFYNG+AVKGT+L++++LPP TI
Sbjct: 589 Q----------------------------PLLMQFRLFYNGSAVKGTVLVDRRLPPATIL 620
Query: 502 IRPSMIKVK---------------------ADRDLSDGQTFNSLEVVKTSNQPRKTYLSR 540
IRPSM+K++ A + LS Q+ NS E+V TSN+PR+T SR
Sbjct: 621 IRPSMVKIETHPELSGVRSVNSSEIVSARNAKKSLSGVQSVNSFEIVSTSNRPRRTLTSR 680
Query: 541 NLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSG 600
LI LL YGGVPE +FL++L++A++ A + +AL+++F+Y M+ D SARMILSG
Sbjct: 681 FLITLLCYGGVPEEYFLELLQSAIEGAENACYDYEDALRIAFSYADME-DSMSARMILSG 739
Query: 601 ISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQV 660
I L+E YLQHRL + ++E+K ++ GK+P+ E YYLM T DPTG L+ NEVC+IL++GQ
Sbjct: 740 IPLEESYLQHRLDFMAQQERKGIKQGKIPIDECYYLMDTTDPTGTLRPNEVCVILENGQF 799
Query: 661 SWEKVLVYRNPGLHFGDIHVLKATYVKELE-DFVGTSKYAIFFPCNGPRSLADEIAGGDF 719
S + VLVY++PGLHFGDIHVLKATY+++LE ++VG +KYAI FP +GPRSLADE+A DF
Sbjct: 800 SGD-VLVYKHPGLHFGDIHVLKATYIRDLEKEYVGYAKYAILFPISGPRSLADEMANSDF 858
Query: 720 DGDMYFVSRNPELLKHFKESERWM-STSKNLSANKRLIDFSLEELESELFKLFLNTRFCP 778
DGD+Y+VS+NP+LL+HFK SE W+ + + K+ D + +LE LF FL TRF P
Sbjct: 859 DGDIYWVSKNPKLLEHFKPSEPWVQAIKPKKTKQKKPQDCNESKLERLLFHEFLKTRFTP 918
Query: 779 SNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVP 838
S A AAD W A MDR LT + E+K ++E ML+L+++YY ALDAP K+G KV +P
Sbjct: 919 SFALGTAADSWLAYMDRLLTDSLDEIEKK-LIEEKMLKLVDLYYLALDAP-KTGNKVNIP 976
Query: 839 EDLKVEKFPCYMRRDESVSFESTSVLGTIYNT---VKSYEAVDRSVTEIWKLPCF-DDGV 894
DL V+++P +M R S S+ S+S+LG IY+ V+S + + + LPCF +
Sbjct: 977 SDLMVKQYPHFMGR--SFSYHSSSILGQIYDKAEDVESLRSCNVQPIGVSLLPCFMEREA 1034
Query: 895 PEACMTKWKGYYDQYRWE----MKEAIDKCTVEREEAAELVIEKYKQILYGAAEFEQSTR 950
P A W+ Y++Y + + +DK ER + + EKYK +LY A+EFEQ+ R
Sbjct: 1035 PPAARHLWQHRYEEYLTDSTMLYRAMVDK--EERNMKFQELYEKYKHMLYDASEFEQTQR 1092
Query: 951 TLEEIYNEALAIYNITYDLAASRRQVSYCSFAWRVAGSALRKFYARRQGDRSMLCSASVL 1010
+++++EA IY I Y+ A S C FAW+VAG AL FYA + + LCS +L
Sbjct: 1093 DPDDVFSEACVIYQIVYEKARWSNDASRCGFAWKVAGRALCHFYALKNEGDTALCSLPLL 1152
Query: 1011 R 1011
R
Sbjct: 1153 R 1153
>gi|218187686|gb|EEC70113.1| hypothetical protein OsI_00772 [Oryza sativa Indica Group]
Length = 1155
Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/960 (44%), Positives = 603/960 (62%), Gaps = 77/960 (8%)
Query: 93 SSPQQNRSPVTVTTVRLLNLPQGTDYVVKQSPV-ADQQPRGSPMSSISHAMRHRASIPQY 151
S+P++ +P +V + L V SP+ A Q + + +A+R AS PQ
Sbjct: 227 STPRRVSTPSSVQDISRLIENMAGPSVSPPSPITAMPQNPTTTCHTTDNALREAAS-PQM 285
Query: 152 VALGELEFRKAFLILSYIGENSLEEVITADEIRGMRDLQMARFESEVWEKLGRKNISQED 211
+AL EL FRK F++ +Y+ +E V++ D IR ++ L M +FES++W G K I+ D
Sbjct: 286 LALEELGFRKIFMVFAYLASEKIENVLSVDYIRSLKFLSMVQFESQIWRTFGHKYIAASD 345
Query: 212 RRMSLKWDSGKTHMYHCHISTKGNCT---FKGPYLNQTRTHLQRELGDDNILLVKFDEEL 268
R +L D G T +YHC+++ +G+ FKGPY+ TRTHL + +GDDN+L+VKF +L
Sbjct: 346 RAKNLDSDPGMTKVYHCNVAIRGDTVVKIFKGPYIENTRTHLHKVVGDDNVLVVKFMGKL 405
Query: 269 GGHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEK-------KKDPSTSPV 321
++ +++ Y+++A +GI++GLR Y FFV+KDGGKEEK K+ TSPV
Sbjct: 406 SDTKT--DFSTYCEHYHKVAEDGIVLGLRRYRFFVYKDGGKEEKLKQEKIEDKNKCTSPV 463
Query: 322 KCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLE 381
+CYFVR ES +M YILSG+TV +AR +FMH+ + ++A YM+R +LILSKT+ L+
Sbjct: 464 RCYFVRTESG--WNMDEPYILSGRTVGQARELFMHISSAPTLAKYMARFALILSKTITLD 521
Query: 382 VDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTND 441
D S + + RI+DEPC D+ GNVV+KD E LIHTDGTG +S DLAL CPT ++K K
Sbjct: 522 ADLSAVYVRRIKDEPCMDRHGNVVHKDQELLIHTDGTGLVSVDLALNCPTSIFKGKFLKP 581
Query: 442 DSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQ 501
+ D E + + R S E PLLMQ RLFYNG+AVKGT+L++++LPP TI
Sbjct: 582 QGIA-TCDESETVMRPNSLKRHRSLTAEHPLLMQFRLFYNGSAVKGTVLVDRRLPPATIL 640
Query: 502 IRPSMIKVK---------------------ADRDLSDGQTFNSLEVVKTSNQPRKTYLSR 540
IRPSM+K++ A + LS Q+ NS E+V TSN+PR+T SR
Sbjct: 641 IRPSMVKIETHPELSGVRSVNSSEIVSARNAKKSLSGVQSVNSFEIVSTSNRPRRTLTSR 700
Query: 541 NLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSG 600
LI LL YGGVPE +FL++L++A++ A + +AL+++F+Y M+ D SARMILSG
Sbjct: 701 FLITLLCYGGVPEEYFLELLQSAIEGAENACYDYEDALRIAFSYADME-DSMSARMILSG 759
Query: 601 ISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQV 660
I L+E YLQHRL + ++E+K ++ GK+P+ E YYLM T DPTG L+ NEVC+IL++GQ
Sbjct: 760 IPLEESYLQHRLDFMAQQERKGIKQGKIPIDECYYLMDTTDPTGTLRPNEVCVILENGQF 819
Query: 661 SWEKVLVYRNPGLHFGDIHVLKATYVKELE-DFVGTSKYAIFFPCNGPRSLADEIAGGDF 719
S + VLVY++PGLHFGDIHVLKATY+++LE ++VG +KYAI FP +GPRSLADE+A DF
Sbjct: 820 SGD-VLVYKHPGLHFGDIHVLKATYIRDLEKEYVGYAKYAILFPISGPRSLADEMANSDF 878
Query: 720 DGDMYFVSRNPELLKHFKESERWM-STSKNLSANKRLIDFSLEELESELFKLFLNTRFCP 778
DGD+Y+VS+NP+LL+HFK SE W+ + + K+ D + +LE LF FL TRF P
Sbjct: 879 DGDIYWVSKNPKLLEHFKPSEPWVQAIKPKKTKQKKPQDCNESKLERLLFHEFLKTRFTP 938
Query: 779 SNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVP 838
S A AAD W A MDR LT + E+K ++E M++L+++YY ALDAP K+G KV +P
Sbjct: 939 SFALGTAADSWLAYMDRLLTDSLDEIEKK-LIEEKMIKLVDLYYLALDAP-KTGNKVNIP 996
Query: 839 EDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCF-DDGVPEA 897
DL V+++P +M R SF + + LPCF + P A
Sbjct: 997 SDLMVKQYPHFMGR----SF----------------------ICRVSLLPCFMEREAPPA 1030
Query: 898 CMTKWKGYYDQYRWE----MKEAIDKCTVEREEAAELVIEKYKQILYGAAEFEQSTRTLE 953
W+ Y++Y + + +DK ER + + EKYK +LY A+EFEQ+ R +
Sbjct: 1031 ARHLWQHRYEEYLTDSTMLYRAMVDK--EERNMKFQELYEKYKHMLYDASEFEQTQRDPD 1088
Query: 954 EIYNEALAIYNITYDLAASRRQVSYCSFAWRVAGSALRKFYARRQGDRSMLCSASVLREI 1013
++++EA IY I Y+ A S C FAW+VAG AL FYA + + LCS +LR+I
Sbjct: 1089 DVFSEACVIYQIVYEKARWSNDASRCGFAWKVAGRALCHFYALKNEGDTALCSLPLLRKI 1148
>gi|242051713|ref|XP_002455002.1| hypothetical protein SORBIDRAFT_03g002800 [Sorghum bicolor]
gi|241926977|gb|EES00122.1| hypothetical protein SORBIDRAFT_03g002800 [Sorghum bicolor]
Length = 1127
Score = 769 bits (1986), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/899 (47%), Positives = 583/899 (64%), Gaps = 45/899 (5%)
Query: 134 PMSSISHAMRHRASIPQYVALGELEFRKAFLILSYIGENSLEEVIT-ADEIRGMRDLQMA 192
P + HA+R S P +ALGELEF + FLI Y G+ +E+V+ IR + L M
Sbjct: 247 PSVAAGHALRATPS-PLMLALGELEFVRIFLIYVYHGDQKIEQVLEDVSYIRHLNSLPMD 305
Query: 193 RFESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGN---CTFKGPYLNQTRTH 249
FESE+W K G K I DRR +L WD KT +Y+C I +G+ FKGPY+ TRTH
Sbjct: 306 YFESEIWNKFGIKYIPASDRRKNLDWDPNKTRLYYCIIEKRGDNIATIFKGPYVENTRTH 365
Query: 250 LQRELGDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGK 309
LQ+ +GDDN+L+VKF + +++N Y+++A +GI++GLR Y FF+ KDGGK
Sbjct: 366 LQKIVGDDNVLIVKFADIPDLENNTDNLGIYCQYYSQVADDGIVLGLRRYRFFIHKDGGK 425
Query: 310 EEKKKDPST-------SP-VKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVS 361
EK K+ SP V+CYFVRMES D Y Y L+ TV++AR +FMH+
Sbjct: 426 TEKLKEEKKKEKNKKLSPSVRCYFVRMESGWERD--YPYKLADYTVNQARRLFMHINNAP 483
Query: 362 SVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFI 421
+VA Y+SR +LILSKT+KL+VDFS++N++ I+DEPCR++ G + +DG+ LIHTDGTG I
Sbjct: 484 TVAKYLSRFALILSKTIKLDVDFSKVNVKIIDDEPCREESGEIAVQDGKDLIHTDGTGLI 543
Query: 422 SEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYN 481
S DLA CP+ ++K D ++D K + T H PLL+Q R+F+N
Sbjct: 544 SVDLARNCPSSIFKGNFLKD-----AVDSKGHQH------LTTKH----PLLIQFRMFHN 588
Query: 482 GTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRN 541
G AVKGTLL +K+LP TI IRPSMIK+ D + ++FNSLEV+ TS +P++ + SR
Sbjct: 589 GYAVKGTLLADKRLPANTIHIRPSMIKIHGDENSFGEKSFNSLEVITTSYRPKRAFTSRF 648
Query: 542 LIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGI 601
LI+LL YG V E FFLD+LRNAL+D RN+L+V+FN+ +D D SARMILSGI
Sbjct: 649 LISLLHYGRVREEFFLDLLRNALEDVNNARHRPRNSLEVAFNHADLD-DSMSARMILSGI 707
Query: 602 SL-DEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQV 660
DE YLQ +L+++ K E+K L+ G++P+ ++YYLMGT DPTG LK ++VCIIL +GQ+
Sbjct: 708 QPEDEAYLQSQLALMAKVERKGLKEGRIPIDDTYYLMGTTDPTGTLKRDQVCIILDNGQL 767
Query: 661 SWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFD 720
S KVLVY++PGLHFGDIH+L ATY+ LE VG SKYAIFFP GPRSLADE+A DFD
Sbjct: 768 SG-KVLVYKHPGLHFGDIHILTATYIDGLEKIVGNSKYAIFFPTCGPRSLADEMANSDFD 826
Query: 721 GDMYFVSRNPELLKHF-KESERWMSTSKNLSAN-KRLIDFSLEELESELFKLFLNTRFCP 778
GD+Y+VSRNP+LL+ F K+ + W+ + K+ D++ +LES LF FL RF P
Sbjct: 827 GDLYWVSRNPQLLEGFTKQRKPWVRRIQPTKTELKKPQDYTGPKLESLLFHEFLRARFTP 886
Query: 779 SNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVP 838
S A++CW A+MDR LT G E+ A+K+ ML L++IYY ALDAPK+ G K+ VP
Sbjct: 887 SYVLGAASNCWLALMDRLLT-GGVPKSERQAIKKKMLDLVDIYYLALDAPKE-GNKITVP 944
Query: 839 EDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCFDD-GVPEA 897
+LKV+K+P +M RDE S+ STSVLG IY+ V E+ +I L CF + V E
Sbjct: 945 GELKVKKYPHFMERDEKKSYTSTSVLGKIYDEVMLKESEIDPEIKIVPLSCFTEVKVSED 1004
Query: 898 CMTKWKGYYDQYRWEMKEAIDKCTV----EREEAAELVIEKYKQILYGAAEFEQSTRTLE 953
+W+ Y QY ++E+ D C + E+ + ++YK+ LY A EFEQS R
Sbjct: 1005 YKGRWRSLYYQY---LRESTDLCKLEDKAEKNNNYRQLYQEYKRKLYEAEEFEQSPREQL 1061
Query: 954 EIYNEALAIYNITYDLAASRRQVSYCSFAWRVAGSALRKFYARRQGDRSMLCSASVLRE 1012
++ NEA A+Y + Y+ A SR ++ C FAW+VAG AL + Y ++G + LCS SVL +
Sbjct: 1062 DLLNEACAVYQVVYEYAMSRNDIAKCGFAWKVAGRALCRLYTLKRGGDTALCSFSVLED 1120
>gi|3687225|gb|AAC62123.1| hypothetical protein [Arabidopsis thaliana]
Length = 929
Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/1048 (45%), Positives = 621/1048 (59%), Gaps = 173/1048 (16%)
Query: 13 VSLPLSVEQLISKIYTEQNKLPPDDGARRSLASLGEDAALDVLRTIASDK--IKYSFSGY 70
++L +E + IY + N P +D R+ L+S+ E+ +++R + S + + Y+ +
Sbjct: 10 IALSGRIETALENIYRKHNLTPINDETRQRLSSIPENLGFELVRKVFSLQAGLIYNLDSF 69
Query: 71 INYLVKKRNN----NGSPLKRVCFSPSSPQQNRSPVTVTTVRLLNLPQGTDYVVKQSPVA 126
I V K N G P SPS +R V Q ++
Sbjct: 70 I---VSKVNQAVSFTGYPQPANSLSPSGRHVSR--------------------VLQEEMS 106
Query: 127 DQQPRGSPMSSISHAMRHRASIPQYVALGELEFRKAFLILSYIGENSLEEVITADEIRGM 186
SP S S IPQ VALGELEF+K FL+LSYI + +VITADEIR
Sbjct: 107 VDSDAPSPKSLKSEDKGGSLHIPQLVALGELEFKKVFLLLSYIPGQHVGQVITADEIRLW 166
Query: 187 RDLQMARFESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQT 246
+DL M +E+ VW++LGR Q+DRRM GP L T
Sbjct: 167 KDLPMVEYEAAVWDRLGRHYCPQKDRRM-------------------------GPLLEHT 201
Query: 247 RTHLQRELGDDNILLVKFDEELGGHRSSNNWN-DSYSKYNEIAREGILVGLRCYHFFVFK 305
THL + LGDDN+L VKF + +SS+ ++ D Y Y IA+ GI++GLR Y FFVFK
Sbjct: 202 GTHLHKVLGDDNVLTVKFADV---QKSSSTYSIDHYFTYKGIAKNGIMIGLRRYQFFVFK 258
Query: 306 DGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVAN 365
DGGKEEKKKD ST VKCYF+R +S+AF DM YIL+GK+++EAR FMHV ++AN
Sbjct: 259 DGGKEEKKKDLSTKKVKCYFIRTDSTAFYDMQNPYILTGKSIYEARMHFMHVHRAPTLAN 318
Query: 366 YMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDG-NVVYKDGEALIHTDGTGFISED 424
YM+R SLILSKT LEVD + I ++I+D C D+DG +V+ K+ + IH+DGTG+ISED
Sbjct: 319 YMARFSLILSKTKTLEVDMTGITFDQIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISED 378
Query: 425 LALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTA 484
LA CP ++K KC +S + PLL+Q R+FY+G A
Sbjct: 379 LARMCPLNIFKGKCLRSESIQ-------------------------PLLIQFRMFYDGYA 413
Query: 485 VKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIA 544
VKGT LLNKKL P+T+Q+RPSMIKV D LS+ TFN+LEVV T +Q
Sbjct: 414 VKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVVTTRSQ------------ 461
Query: 545 LLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLD 604
+F + NYG MD D +A+MIL GI LD
Sbjct: 462 -------------------------IFG------AAALNYGEMD-DQNAAQMILVGIPLD 489
Query: 605 EPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEK 664
EP+L++ LSIL+K EK L+AGKLPVTESYYLMGTVDPTG LK +EVC+IL+ GQ+S E
Sbjct: 490 EPHLKNYLSILLKTEKNDLKAGKLPVTESYYLMGTVDPTGALKEDEVCVILESGQISGE- 548
Query: 665 VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMY 724
VLVYRNPGLHFGDIH+LKATYVK LE++VG SK+A+FFP GPRSL DEIAGGDFDGDMY
Sbjct: 549 VLVYRNPGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMY 608
Query: 725 FVSRNPELLKHFKESERWMSTSKNLSAN--KRLIDFSLEELESELFKLFLNTRFCPSNAK 782
F+SRNPELL++FK SE W+S + +N + S EELE ELF++FL F SN
Sbjct: 609 FISRNPELLENFKPSEPWVSLTPPSKSNSGRAPSQLSPEELEEELFEMFLTAGFHASNVI 668
Query: 783 SLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLK 842
+AAD W +MDRFL LGD+ AEEKA MK+ ML LI+IYYDALDAPKK G KV +P LK
Sbjct: 669 GIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKK-GDKVYLPNKLK 727
Query: 843 VEKFPCYMRRDESVSFESTSVLGTIYNTVKS---------------------YEAVDRSV 881
+ FP YM RD+ F+STS+LG I++ VKS Y + + +
Sbjct: 728 PDIFPHYMERDK--KFQSTSILGLIFDFVKSQTTEEPSPSSGKGPLLVLLYTYNQITKEI 785
Query: 882 T------------EIWKLPCF-DDGVPEACMTKWKGYYDQYRWEMKEAIDKCTVEREEAA 928
EI KLPCF D+ V E M K + +YD YR EM +A+ +++E+A
Sbjct: 786 INHDMCFTVVYNLEISKLPCFEDEPVSEFHMQKCRLWYDNYRTEMTQAM---KTDKDESA 842
Query: 929 ELVIEKYKQILYGAAEFEQSTRTLEEIYNEALAIYNITYDLAASRRQVSYCSFAWRVAGS 988
VI++YKQ YGAA FE S ++LEE+Y +ALA+Y I YD A VS C F W+VAG
Sbjct: 843 NEVIQRYKQEFYGAAGFEDSKKSLEELYPQALALYKIVYDYAI-HAGVSKCRFVWKVAGP 901
Query: 989 ALRKFYA-RRQGDRSMLCSASVLREICG 1015
L +FY ++ ++ ++C+ SVL+E+ G
Sbjct: 902 VLCRFYLNKKMQEKCLVCAPSVLKELWG 929
>gi|297832164|ref|XP_002883964.1| hypothetical protein ARALYDRAFT_319567 [Arabidopsis lyrata subsp.
lyrata]
gi|297329804|gb|EFH60223.1| hypothetical protein ARALYDRAFT_319567 [Arabidopsis lyrata subsp.
lyrata]
Length = 893
Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/968 (47%), Positives = 597/968 (61%), Gaps = 123/968 (12%)
Query: 6 VVSQQGVVSLPLSVEQLISKIYTEQNKLPPDD-GARRSLASLGEDAALDVLRTIASDKIK 64
V S+ +V L SVE ++ KIY + N PP RR L+S+ E+ AL+ LR + + +
Sbjct: 10 VFSRSEIVLLG-SVETMLEKIYGKHNHHPPIKVETRRKLSSISEELALETLRKVLNMEYV 68
Query: 65 YSFSGYINYLVKKRNN-NGSPLKRVCFSPSSPQQNRSPVTVTTVRLLNLPQGTDYVVKQS 123
+ G I Y V +GSP R+ S SP Q SP T K+
Sbjct: 69 KTLDGIIMYFVNNAATVDGSP--RLS-SGESPLQ--SPTTPGK--------------KEV 109
Query: 124 PVADQQPRGSPMSSISHAMRHRASIPQYVALGELEFRKAFLILSYIGEN------SLEEV 177
+ + P SP IP VALGELEF+KAFL+L+Y+G + SL EV
Sbjct: 110 SLDGEDP--SPKFLRRDETGRTNHIPPLVALGELEFKKAFLLLTYLGGDRFCYRKSLGEV 167
Query: 178 ITADEIRGMRDLQMARFESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCT 237
I+ DEIR +DL M +ES VW KLG Q ++R+SL+ DSGKTH Y CH++ G+
Sbjct: 168 ISGDEIRQWKDLPMVAYESAVWFKLG-----QNEQRISLESDSGKTHYYQCHVTPDGSYR 222
Query: 238 FKGPYLNQTRTHLQRELGDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIAREGILVGLR 297
FKG L T THL + LGDDN+L VKFD+ + S ND YSK+ EIA+ GI+VGLR
Sbjct: 223 FKGYLLENTGTHLHKVLGDDNVLTVKFDQL---PKESTYCNDPYSKHKEIAKNGIMVGLR 279
Query: 298 CYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHV 357
Y FVFKDGGK EKKK ST VKCYF+RM+S+A DM YIL+G ++HEAR FMHV
Sbjct: 280 RYQIFVFKDGGKAEKKKRNSTKQVKCYFIRMDSTASSDMENPYILAGMSIHEARMHFMHV 339
Query: 358 RTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGN-VVYKDGEALIHTD 416
T+ S ANYM+R SLILSKT KLEVD + I +++I+D C D+ N V+ K+G+ IH+D
Sbjct: 340 HTLPSPANYMARFSLILSKTKKLEVDMTGITVKQIDDIHCHDQSNNDVLDKNGKPRIHSD 399
Query: 417 GTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQV 476
GTG+ISEDLA CP ++K K SD+ + ++ EPPLL+Q+
Sbjct: 400 GTGYISEDLARMCPVNIFKGKNIK-----------------SDIIQGKTCGQEPPLLIQI 442
Query: 477 RLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKT 536
R+F +G+AVKG LLNK LPP+T+Q+RPSMIKV D++LS+ TFNSLEVV TSN P++
Sbjct: 443 RMFNDGSAVKGIFLLNKNLPPRTVQVRPSMIKVYKDKNLSNFSTFNSLEVVTTSNPPKRA 502
Query: 537 YLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDY------- 589
LS+NL+ALLSYGGVP FFLDIL N L+ VF R A K S M
Sbjct: 503 KLSKNLVALLSYGGVPNDFFLDILLNTLEKKNTVFFKIRAAGKGSMRSHMMALFLSLFVF 562
Query: 590 ----------DFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGT 639
D + +MI++GI LDEPYL+H LS+L+K +K L+AG+LP+ ESYYLMGT
Sbjct: 563 CSCTSLRNMDDKNALQMIMAGIPLDEPYLKHHLSLLLKIKKDDLKAGRLPIDESYYLMGT 622
Query: 640 VDPTGILKSNEVCIILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYA 699
VDPTG LK +EVC+IL NPGLHFGDIH+L+ATYVK LE +VG SKYA
Sbjct: 623 VDPTGELKEDEVCVIL--------------NPGLHFGDIHILQATYVKTLEQYVGNSKYA 668
Query: 700 IFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTS--KNLSANKRLID 757
+FFP GPRSL DEIAGGDFDGDMYF+SRNP+LL+H+K SE W+S+S + ++ +
Sbjct: 669 VFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHYKPSEPWVSSSPPSKIYTGRKPSE 728
Query: 758 FSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRL 817
S E+LE ELF +FL T F PSN AAD W +MDRFLTLGDE
Sbjct: 729 LSPEQLEEELFNMFLKTGFSPSNVIGQAADSWLGIMDRFLTLGDE--------------- 773
Query: 818 INIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAV 877
+A+DAP K+G +V +P D+K + FP YM R++ F+S S+LG I++TV S+ A
Sbjct: 774 -----NAIDAP-KTGTEVNLPFDVKADVFPHYMERNK--IFKSISILGLIFDTVDSHNAE 825
Query: 878 DRS------VTEIWKLPCF-DDGVPEACMTKWKGYYDQYRWEMKEAIDKCTVEREEAAEL 930
D + ++EI KL CF D+ V E M K K ++ YR EM +A+ +++ +
Sbjct: 826 DPTPSALGYLSEISKLQCFEDEPVSEFDMEKCKSWHKDYRKEMCQAMH----SDDDSCDE 881
Query: 931 VIEKYKQI 938
VI+KYK++
Sbjct: 882 VIQKYKKV 889
>gi|251765120|sp|Q5QMN4.2|RDR4_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 4; Short=OsRDR4
Length = 1183
Score = 755 bits (1950), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/921 (45%), Positives = 584/921 (63%), Gaps = 82/921 (8%)
Query: 149 PQYVALGELEFRKAFLILSYIGENS--------------LEEVITADEIRGMRDLQMARF 194
PQ +ALGELEFRK F+I +Y+ N +E+V++ D IR ++ + MA+F
Sbjct: 277 PQMLALGELEFRKIFMIFAYLSWNKKGVKPPLSTPKSSKIEDVLSVDSIRSLKSMSMAQF 336
Query: 195 ESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCT---FKGPYLNQTRTHLQ 251
ES +W G NIS DR +L G + +YHC++ +G FKGPY+ RTHLQ
Sbjct: 337 ESRIWSTFGHDNISSSDRAKNLDSGPGMSKVYHCNVEIRGGTVVKIFKGPYIENRRTHLQ 396
Query: 252 RELGDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEE 311
+ LGDDN+L+VKF E + + + Y+++A EGI++GLRCY FF++KDGGKE
Sbjct: 397 KVLGDDNVLVVKFMEI--SSDTETDLSTYLEHYHKVAEEGIVLGLRCYRFFLYKDGGKEN 454
Query: 312 KKKDPS--------TSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSV 363
K K+ + TS V+CYFVR ES +M YILSG+T+ +AR +FMH+RTV ++
Sbjct: 455 KMKEENREEENKKCTSSVRCYFVRTESG--WNMDEPYILSGRTIGQARDLFMHIRTVLTL 512
Query: 364 ANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISE 423
A YM R +LI+SKT+ L+VD S + ++ I+DEPC D+ G V++DGE LIHTDGTG ISE
Sbjct: 513 AKYMLRFALIVSKTITLDVDLSEVLVKLIDDEPCLDEHGKEVFRDGERLIHTDGTGLISE 572
Query: 424 DLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGT 483
DLA +KCT +S + ++ +++ + ++ E PLL+Q+RLFYNG+
Sbjct: 573 DLA---------QKCTYSNSKGKLLEPQDIVDCAASKLMGSNNTTEYPLLIQLRLFYNGS 623
Query: 484 AVKGTLLLNKKLPPQTIQIRPSMIKVK---------------------ADRDLSDGQTFN 522
AVKGT+L++K+LPP+TI IRPSM+K+K A + LS Q+ N
Sbjct: 624 AVKGTVLVDKRLPPRTIHIRPSMLKIKTYPELSGVQSVNSLDIVSARNAKKSLSGVQSVN 683
Query: 523 SLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSF 582
S E+V TSN+ +T+ S NLIALL YGGVPE FF+++L+ A+++A + AL ++F
Sbjct: 684 SFEIVSTSNRSGRTFTSNNLIALLHYGGVPEEFFMELLQTAIEEADNARFDYAGALNIAF 743
Query: 583 NYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDP 642
NY M+ D ARMILSGI L+E YLQ RL L E+K ++ GK+P+ + YYLMGT DP
Sbjct: 744 NYADME-DSMPARMILSGIPLEESYLQSRLDFLSLLERKGIKNGKIPIDDCYYLMGTADP 802
Query: 643 TGILKSNEVCIILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFF 702
TG L NEVC+IL GQVS + VLVY+ PGLH GDIHVLKATY ++E VG SK+AI F
Sbjct: 803 TGKLGPNEVCVILDYGQVSGD-VLVYKYPGLHPGDIHVLKATYSSDIEKVVGNSKHAILF 861
Query: 703 PCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWM-STSKNLSANKRLIDFSLE 761
P G RSLADE+A DFDGD+Y+VS NP+LL+HFK S+ W+ + + N + K DF+
Sbjct: 862 PTTGQRSLADEMANSDFDGDIYWVSLNPKLLEHFKPSKPWVPAITPNGTKQKGPEDFNES 921
Query: 762 ELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLG-DESAEEKAAMKENMLRLINI 820
ELE LF FL TRF PS A++ AA W MDR LT+ DES EK +++ ML+L+++
Sbjct: 922 ELERVLFHEFLKTRFAPSYARATAATNWLVYMDRLLTVSLDES--EKKLIEKKMLKLVDL 979
Query: 821 YYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTV---KSYEAV 877
YY ALDAPK G KV +P DL V+++P +M D S S+ S+S+LG IY+ K +
Sbjct: 980 YYLALDAPKM-GNKVNIPRDLMVKQYPHFM--DRSPSYHSSSILGKIYDKAGDPKPLRSD 1036
Query: 878 DRSVTEIWKLPCFDD-GVPEACMTKWKGYYDQY------RWEMKEAIDKCTVEREEAAEL 930
+ T I LPCF + VP A W+ Y++Y + + ++ ++ +E
Sbjct: 1037 NVQPTSISSLPCFAERDVPPAIKQLWQHRYNEYLADSSLLYAEEADEEEKKIKFQE---- 1092
Query: 931 VIEKYKQILYGAAEFEQSTRTLEEIYNEALAIYNITYDLAASRRQVSYCSFAWRVAGSAL 990
+ EKYK +LYGA+EFE++ R L+++++EA AIY I Y+ A S V+ C FAW+VAG AL
Sbjct: 1093 LYEKYKHLLYGASEFEETPRDLDDVFSEACAIYQIAYEKARSANNVARCGFAWKVAGRAL 1152
Query: 991 RKFYARRQGDRSMLCSASVLR 1011
FY + +++CS +LR
Sbjct: 1153 CHFYTVKNEGNAVVCSLQLLR 1173
>gi|222617921|gb|EEE54053.1| hypothetical protein OsJ_00746 [Oryza sativa Japonica Group]
Length = 1148
Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/921 (45%), Positives = 578/921 (62%), Gaps = 101/921 (10%)
Query: 149 PQYVALGELEFRKAFLILSYIGENS--------------LEEVITADEIRGMRDLQMARF 194
PQ +ALGELEFRK F+I +Y+ N +E+V++ D IR ++ + MA+F
Sbjct: 261 PQMLALGELEFRKIFMIFAYLSWNKKGVKPPLSTPKSSKIEDVLSVDSIRSLKSMSMAQF 320
Query: 195 ESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCT---FKGPYLNQTRTHLQ 251
ES +W G NIS DR +L G + +YHC++ +G FKGPY+ RTHLQ
Sbjct: 321 ESRIWSTFGHDNISSSDRAKNLDSGPGMSKVYHCNVEIRGGTVVKIFKGPYIENRRTHLQ 380
Query: 252 RELGDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEE 311
+ LGDDN+L+VKF E + + + Y+++A EGI++GLRCY FF++KDGGKE
Sbjct: 381 KVLGDDNVLVVKFMEI--SSDTETDLSTYLEHYHKVAEEGIVLGLRCYRFFLYKDGGKEN 438
Query: 312 KKKDPS--------TSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSV 363
K K+ + TS V+CYFVR ES +M YILSG+T+ +AR +FMH+RTV ++
Sbjct: 439 KMKEENREEENKKCTSSVRCYFVRTESG--WNMDEPYILSGRTIGQARDLFMHIRTVLTL 496
Query: 364 ANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISE 423
A YM R +LI+SKT+ L+VD S + ++ I+DEPC D+ G V++DGE LIHTDGTG ISE
Sbjct: 497 AKYMLRFALIVSKTITLDVDLSEVLVKLIDDEPCLDEHGKEVFRDGERLIHTDGTGLISE 556
Query: 424 DLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGT 483
DLA +KCT +S + ++ + PLL+Q+RLFYNG+
Sbjct: 557 DLA---------QKCTYSNSKGKLLEPQ-------------------PLLIQLRLFYNGS 588
Query: 484 AVKGTLLLNKKLPPQTIQIRPSMIKVK---------------------ADRDLSDGQTFN 522
AVKGT+L++K+LPP+TI IRPSM+K+K A + LS Q+ N
Sbjct: 589 AVKGTVLVDKRLPPRTIHIRPSMLKIKTYPELSGVQSVNSLDIVSARNAKKSLSGVQSVN 648
Query: 523 SLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSF 582
S E+V TSN+ +T+ S NLIALL YGGVPE FF+++L+ A+++A + AL ++F
Sbjct: 649 SFEIVSTSNRSGRTFTSNNLIALLHYGGVPEEFFMELLQTAIEEADNARFDYAGALNIAF 708
Query: 583 NYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDP 642
NY M+ D ARMILSGI L+E YLQ RL L E+K ++ GK+P+ + YYLMGT DP
Sbjct: 709 NYADME-DSMPARMILSGIPLEESYLQSRLDFLSLLERKGIKNGKIPIDDCYYLMGTADP 767
Query: 643 TGILKSNEVCIILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFF 702
TG L NEVC+IL GQVS + VLVY+ PGLH GDIHVLKATY ++E VG SK+AI F
Sbjct: 768 TGKLGPNEVCVILDYGQVSGD-VLVYKYPGLHPGDIHVLKATYSSDIEKVVGNSKHAILF 826
Query: 703 PCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWM-STSKNLSANKRLIDFSLE 761
P G RSLADE+A DFDGD+Y+VS NP+LL+HFK S+ W+ + + N + K DF+
Sbjct: 827 PTTGQRSLADEMANSDFDGDIYWVSLNPKLLEHFKPSKPWVPAITPNGTKQKGPEDFNES 886
Query: 762 ELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLG-DESAEEKAAMKENMLRLINI 820
ELE LF FL TRF PS A++ AA W MDR LT+ DES EK +++ ML+L+++
Sbjct: 887 ELERVLFHEFLKTRFAPSYARATAATNWLVYMDRLLTVSLDES--EKKLIEKKMLKLVDL 944
Query: 821 YYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTV---KSYEAV 877
YY ALDAPK G KV +P DL V+++P +M D S S+ S+S+LG IY+ K +
Sbjct: 945 YYLALDAPKM-GNKVNIPRDLMVKQYPHFM--DRSPSYHSSSILGKIYDKAGDPKPLRSD 1001
Query: 878 DRSVTEIWKLPCFDD-GVPEACMTKWKGYYDQY------RWEMKEAIDKCTVEREEAAEL 930
+ T I LPCF + VP A W+ Y++Y + + ++ ++ +E
Sbjct: 1002 NVQPTSISSLPCFAERDVPPAIKQLWQHRYNEYLADSSLLYAEEADEEEKKIKFQE---- 1057
Query: 931 VIEKYKQILYGAAEFEQSTRTLEEIYNEALAIYNITYDLAASRRQVSYCSFAWRVAGSAL 990
+ EKYK +LYGA+EFE++ R L+++++EA AIY I Y+ A S V+ C FAW+VAG AL
Sbjct: 1058 LYEKYKHLLYGASEFEETPRDLDDVFSEACAIYQIAYEKARSANNVARCGFAWKVAGRAL 1117
Query: 991 RKFYARRQGDRSMLCSASVLR 1011
FY + +++CS +LR
Sbjct: 1118 CHFYTVKNEGNAVVCSLQLLR 1138
>gi|147767777|emb|CAN71520.1| hypothetical protein VITISV_042316 [Vitis vinifera]
Length = 1202
Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/856 (50%), Positives = 543/856 (63%), Gaps = 131/856 (15%)
Query: 160 RKAFLILSYIGENSLEEVITADEIRGMRDLQMARFESEVWEKLGRKNISQEDRRMSLKWD 219
++A L++ I E++++A+EI +++L M FE+EVW LGRK I +EDR+ S WD
Sbjct: 474 KEADLLIQQIEIKRPEDLLSAEEILKLKNLPMGVFETEVWNNLGRKFIKEEDRQRSFDWD 533
Query: 220 SGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGDDNILLVKFDEELGGHRSSNNWND 279
S KTH+YHCH+S G+ FKGPYLN+TRTHLQR LGD+NILLVKF E++ S N D
Sbjct: 534 SDKTHIYHCHVSPDGSYRFKGPYLNKTRTHLQRVLGDENILLVKFAEDVTDRSSLNCSTD 593
Query: 280 SYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQ 339
S + YN+IAREGI VGLR Y FFVFKDGGKEEKKK+P TS VKCYFV MESSA
Sbjct: 594 SNASYNKIAREGIFVGLRQYRFFVFKDGGKEEKKKNP-TSSVKCYFVFMESSA------- 645
Query: 340 YILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRD 399
LSGKT D
Sbjct: 646 --LSGKT----------------------------------------------------D 651
Query: 400 KDGNVVY-KDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFS 458
+DG VVY +D LI TDGTGFISEDLAL+CP + + K + +++R + ELE FS
Sbjct: 652 EDGXVVYDEDWXPLILTDGTGFISEDLALRCPNNLCRGKYMXNGNSDRLVGNVELEGKFS 711
Query: 459 DVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDG 518
++ E+H EPPLL+Q RLF NG AVKGTLLLN+KLPP+TIQIRPSMIKV+ D LSD
Sbjct: 712 ELRCLETHTWEPPLLIQCRLFNNGCAVKGTLLLNRKLPPRTIQIRPSMIKVETDPKLSDT 771
Query: 519 QTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNAL 578
QT NS+E+ TSNQPR++YLS+ LIALLSYGGVP +F+++L++AL+DA V S
Sbjct: 772 QTVNSVEINGTSNQPRRSYLSKYLIALLSYGGVPNEYFMNLLKDALEDAPSVQS------ 825
Query: 579 KVSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMG 638
+S + MD D RMILSGI +DEP+LQHRLS ++ EE+K L+ GKLPV + +YLMG
Sbjct: 826 -ISLRFDEMD-DSIVTRMILSGIPIDEPFLQHRLSFMVNEERKGLRVGKLPVNDCFYLMG 883
Query: 639 TVDPTGILKSNEVCIILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKY 698
T DPTG LKS+EVCIIL GQV +VLVY++PGLHFGDIHVL ATYV+ LE+
Sbjct: 884 TADPTGKLKSDEVCIILDHGQVQ-GRVLVYKHPGLHFGDIHVLNATYVEALEE------- 935
Query: 699 AIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWM-STSKNLSANKRLID 757
SE WM S +KR D
Sbjct: 936 ---------------------------------------ASEPWMRKXSTRHVPSKRPTD 956
Query: 758 FSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRL 817
FS +ELE ELF+LFL TRF S+A +AAD W MDR LTL D+ ++EK +K ML L
Sbjct: 957 FSPDELEHELFQLFLTTRFQTSSAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLEL 1016
Query: 818 INIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAV 877
+IYYDALDAP KSG+KV V ++LK EKFP +M R+ S+ STS+LG IY+ V+S++
Sbjct: 1017 TDIYYDALDAP-KSGMKVNVSKELKAEKFPHFMGRES--SYHSTSILGQIYDAVESFQPE 1073
Query: 878 DRSVTEIWKLPCFDDGVPEACMTKWKGYYDQYRWEMKEAIDKCTVEREEAAELVIEKYKQ 937
++S D VP+AC+ WK YDQYR EM A+ ++E A VI KYKQ
Sbjct: 1074 NQSTK---------DAVPQACLRSWKDRYDQYRSEMAAALQHGGETKDEYAAEVINKYKQ 1124
Query: 938 ILYGAAEFEQSTRTLEEIYNEALAIYNITYDLAASRRQVSYCSFAWRVAGSALRKFYARR 997
ILYGAAEFE+S R LE+I++EALAIY++TY+ A + +VSYC+F WRVAG AL K Y +
Sbjct: 1125 ILYGAAEFEESPRKLEDIFDEALAIYHVTYEFAINGARVSYCNFPWRVAGRALCKLYTVK 1184
Query: 998 QGDRSMLCSASVLREI 1013
G++SM+C SVLR++
Sbjct: 1185 LGEKSMVCVPSVLRQV 1200
>gi|218187687|gb|EEC70114.1| hypothetical protein OsI_00773 [Oryza sativa Indica Group]
Length = 1172
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/931 (43%), Positives = 564/931 (60%), Gaps = 136/931 (14%)
Query: 149 PQYVALGELEFRKAFLILSYIGENS--------------LEEVITADEIRGMRDLQMARF 194
PQ +ALGELEFRK F+I +Y+ N +E+V++ D IR ++ + MA+F
Sbjct: 300 PQMLALGELEFRKIFMIFAYLSWNKKGVKPPLSTPKSSKIEDVLSVDSIRSLKSMSMAQF 359
Query: 195 ESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQREL 254
ES +W G NIS DR KGPY+ RTHLQ+ L
Sbjct: 360 ESRIWSTFGHDNISSSDRA-------------------------KGPYIENRRTHLQKVL 394
Query: 255 GDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKK 314
GDDN+L+V F E + + + Y+++A EGI++GLRCY FF++KDGGKE K K
Sbjct: 395 GDDNVLVVNFMEI--SSDTETDLSTYLEHYHKVAEEGIVLGLRCYRFFLYKDGGKENKMK 452
Query: 315 DPS--------TSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANY 366
+ + TS V+CYFVR ES +M YILSG+T+ +AR +FMH+RTV ++A Y
Sbjct: 453 EENREEENKKCTSSVRCYFVRTESG--WNMDEPYILSGRTIGQARDLFMHIRTVLTLAKY 510
Query: 367 MSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLA 426
M R +LI+SKT+ L+VD S + ++ I+DEPC D+ G V++DGE LIHTDGTG ISEDLA
Sbjct: 511 MLRFALIVSKTITLDVDLSEVLVKLIDDEPCLDEHGKEVFRDGERLIHTDGTGLISEDLA 570
Query: 427 LKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVK 486
+KCT +S + ++ + PLL+Q+RLFYNG+AVK
Sbjct: 571 ---------QKCTYSNSKGKLLEPQ-------------------PLLIQLRLFYNGSAVK 602
Query: 487 GTLLLNKKLPPQTIQIRPSMIKVK---------------------ADRDLSDGQTFNSLE 525
GT+L++K+LPP+TI IRPSM+K+K A + LS Q+ NS E
Sbjct: 603 GTVLVDKRLPPRTIHIRPSMLKIKTYPELSGVQSVNSLDIVSARNAKKSLSGVQSVNSFE 662
Query: 526 VVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYG 585
+V TSN+ +T+ S NLIALL YGGVPE FF+++L+ A+++A + AL ++FNY
Sbjct: 663 IVSTSNRSGRTFTSNNLIALLHYGGVPEEFFMELLQTAIEEADNARFDYAGALNIAFNYA 722
Query: 586 GMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGI 645
M+ D ARMILSGI L+E YLQ RL L E+K ++ GK+P+ + YYLMGT DPTG
Sbjct: 723 DME-DSMPARMILSGIPLEESYLQSRLDFLSLLERKGIKNGKIPIDDCYYLMGTADPTGK 781
Query: 646 LKSNEVCIILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCN 705
L NEVC+IL GQVS + VLVY+ PGLH GDIHVLKATY ++ VG SK+AI FP
Sbjct: 782 LGPNEVCVILDYGQVSGD-VLVYKYPGLHPGDIHVLKATYSSDIGKVVGNSKHAILFPTT 840
Query: 706 GPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWM-STSKNLSANKRLIDFSLEELE 764
G RSLADE+A DFDGD+Y+VS NP+LL+HFK S+ W+ + + N + K DF+ ELE
Sbjct: 841 GQRSLADEMANSDFDGDIYWVSLNPKLLEHFKPSKPWVPAITPNGTKQKGPEDFNESELE 900
Query: 765 SELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLG-DESAEEKAAMKENMLRLINIYYD 823
LF FL TRF PS A++ AA W MDR LT+ DES EK +++ ML+L+++YY
Sbjct: 901 RVLFHEFLKTRFAPSYARATAATNWLVYMDRLLTVSLDES--EKKLIEKKMLKLVDLYYL 958
Query: 824 ALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTV---KSYEAVDRS 880
ALDAPK G KV +P DL V+++P +M D S S+ S+S+LG IY+ K + +
Sbjct: 959 ALDAPKM-GNKVNIPRDLMVKQYPHFM--DRSPSYHSSSILGKIYDKAGDPKPLRSDNVQ 1015
Query: 881 VTEIWKLPCFDD-GVPEACMTKWKGYYDQY------RWEMKEAIDKCTVEREEAAELVIE 933
T I LPCF + VP A W+ Y++Y + + ++ ++ +E + E
Sbjct: 1016 PTSISSLPCFAERDVPPAIKQLWQHRYNEYLADSSLLYAEEADEEEKKIKFQE----LYE 1071
Query: 934 KYK-------------QILYGAAEFEQSTRTLEEIYNEALAIYNITYDLAASRRQVSYCS 980
KYK Q+LYGA+EFE++ R L+++++EA AIY I Y+ A S V+ C
Sbjct: 1072 KYKHLQSSDPIALANIQLLYGASEFEETPRDLDDVFSEACAIYQIAYEKARSANNVARCG 1131
Query: 981 FAWRVAGSALRKFYARRQGDRSMLCSASVLR 1011
FAW+VAG AL FY + +++CS +LR
Sbjct: 1132 FAWKVAGRALCHFYTVKNEGNAVVCSLQLLR 1162
>gi|224093866|ref|XP_002310026.1| hypothetical protein POPTRDRAFT_562705 [Populus trichocarpa]
gi|222852929|gb|EEE90476.1| hypothetical protein POPTRDRAFT_562705 [Populus trichocarpa]
Length = 406
Score = 504 bits (1297), Expect = e-139, Method: Compositional matrix adjust.
Identities = 266/407 (65%), Positives = 315/407 (77%), Gaps = 11/407 (2%)
Query: 328 MESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRI 387
MES A ID IL GKT+ +AR +FMHV +SS++NYM+R SLILSKTM LEVD S +
Sbjct: 1 MESVASID-NQDNILCGKTIRQARSVFMHVDNLSSLSNYMARFSLILSKTMNLEVDLSCV 59
Query: 388 NIERIEDEPCRDKDGNVVY-KDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTER 446
+I+ I DEPCRDKDGN VY DG+ LIHTDGTGFIS DLALKCP K C + ER
Sbjct: 60 DIKPIADEPCRDKDGNAVYGTDGKPLIHTDGTGFISHDLALKCPKNQVKGTCLQASNIER 119
Query: 447 -SIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPS 505
+ + +E N E +G+PPLL+Q RLF NG AVKGT L+NKKL +T+ +RPS
Sbjct: 120 LRVHNEVMEQN------PECLHGDPPLLIQFRLFNNGRAVKGTFLVNKKLNHRTLHVRPS 173
Query: 506 MIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALD 565
MIKV+ D LS+ + NSLE+V TS +P+KT+LS+NLIALLSYGGVPE FF+ IL NAL+
Sbjct: 174 MIKVETDPKLSNTFSKNSLEIVGTSCRPKKTFLSKNLIALLSYGGVPEEFFMGILNNALE 233
Query: 566 DARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQA 625
DA G+ SNK+ AL+V+ NYG MD D A MI GI L+EPYLQH LSIL KEEKKSL+
Sbjct: 234 DAHGILSNKKAALRVALNYGDMD-DNIVATMIGCGIPLEEPYLQHHLSILKKEEKKSLKG 292
Query: 626 GKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEKVLVYRNPGLHFGDIHVLKATY 685
GK+PV ESYYLMGT DPTG+L+S+EVCIIL GQVS E VLVYRNPGLHFGDIH+LKATY
Sbjct: 293 GKIPVPESYYLMGTADPTGLLESDEVCIILDCGQVSGE-VLVYRNPGLHFGDIHILKATY 351
Query: 686 VKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPEL 732
V+ELEDFVG +KYAIFFPC GPRSLADE++GGDFDGDM+FVSRNP +
Sbjct: 352 VRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDMFFVSRNPRV 398
>gi|115435092|ref|NP_001042304.1| Os01g0198000 [Oryza sativa Japonica Group]
gi|56201772|dbj|BAD73222.1| RNA-dependent RNA polymerase -like [Oryza sativa Japonica Group]
gi|56201879|dbj|BAD73329.1| RNA-dependent RNA polymerase -like [Oryza sativa Japonica Group]
gi|113531835|dbj|BAF04218.1| Os01g0198000 [Oryza sativa Japonica Group]
gi|215693837|dbj|BAG89036.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 582
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 272/576 (47%), Positives = 373/576 (64%), Gaps = 44/576 (7%)
Query: 469 EPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVK------------------ 510
E PLL+Q+RLFYNG+AVKGT+L++K+LPP+TI IRPSM+K+K
Sbjct: 8 EYPLLIQLRLFYNGSAVKGTVLVDKRLPPRTIHIRPSMLKIKTYPELSGVQSVNSLDIVS 67
Query: 511 ---ADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDA 567
A + LS Q+ NS E+V TSN+ +T+ S NLIALL YGGVPE FF+++L+ A+++A
Sbjct: 68 ARNAKKSLSGVQSVNSFEIVSTSNRSGRTFTSNNLIALLHYGGVPEEFFMELLQTAIEEA 127
Query: 568 RGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGK 627
+ AL ++FNY M+ D ARMILSGI L+E YLQ RL L E+K ++ GK
Sbjct: 128 DNARFDYAGALNIAFNYADME-DSMPARMILSGIPLEESYLQSRLDFLSLLERKGIKNGK 186
Query: 628 LPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVK 687
+P+ + YYLMGT DPTG L NEVC+IL GQVS + VLVY+ PGLH GDIHVLKATY
Sbjct: 187 IPIDDCYYLMGTADPTGKLGPNEVCVILDYGQVSGD-VLVYKYPGLHPGDIHVLKATYSS 245
Query: 688 ELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWM-STS 746
++E VG SK+AI FP G RSLADE+A DFDGD+Y+VS NP+LL+HFK S+ W+ + +
Sbjct: 246 DIEKVVGNSKHAILFPTTGQRSLADEMANSDFDGDIYWVSLNPKLLEHFKPSKPWVPAIT 305
Query: 747 KNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLG-DESAE 805
N + K DF+ ELE LF FL TRF PS A++ AA W MDR LT+ DES
Sbjct: 306 PNGTKQKGPEDFNESELERVLFHEFLKTRFAPSYARATAATNWLVYMDRLLTVSLDES-- 363
Query: 806 EKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLG 865
EK +++ ML+L+++YY ALDAPK G KV +P DL V+++P +M D S S+ S+S+LG
Sbjct: 364 EKKLIEKKMLKLVDLYYLALDAPKM-GNKVNIPRDLMVKQYPHFM--DRSPSYHSSSILG 420
Query: 866 TIYNTV---KSYEAVDRSVTEIWKLPCFDD-GVPEACMTKWKGYYDQY------RWEMKE 915
IY+ K + + T I LPCF + VP A W+ Y++Y + +
Sbjct: 421 KIYDKAGDPKPLRSDNVQPTSISSLPCFAERDVPPAIKQLWQHRYNEYLADSSLLYAEEA 480
Query: 916 AIDKCTVEREEAAELVIEKYKQILYGAAEFEQSTRTLEEIYNEALAIYNITYDLAASRRQ 975
++ ++ +E + EKYK +LYGA+EFE++ R L+++++EA AIY I Y+ A S
Sbjct: 481 DEEEKKIKFQE----LYEKYKHLLYGASEFEETPRDLDDVFSEACAIYQIAYEKARSANN 536
Query: 976 VSYCSFAWRVAGSALRKFYARRQGDRSMLCSASVLR 1011
V+ C FAW+VAG AL FY + +++CS +LR
Sbjct: 537 VARCGFAWKVAGRALCHFYTVKNEGNAVVCSLQLLR 572
>gi|297832166|ref|XP_002883965.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329805|gb|EFH60224.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 934
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 281/615 (45%), Positives = 365/615 (59%), Gaps = 70/615 (11%)
Query: 7 VSQQGVVSLPLSVEQLISKIYTEQNKLPPDD-GARRSLASLGEDAALDVLRTIASDKIKY 65
VS + ++L SVE ++ KIY + + P RR L+S+ E+ AL+ LR + +
Sbjct: 9 VSPRTEIALLGSVETMLEKIYEKHKQHRPIKVETRRRLSSISEELALETLRKVFNMPYVK 68
Query: 66 SFSGYINYLVKKRNNNGSPLKRVCFSPSSPQQNRSPVTVTTVRLLNLPQGTDYVVK-QSP 124
+ G I Y V NN + + SS Q R+P + RL D + ++P
Sbjct: 69 TLDGIIMYFV----NNAATV-----DGSSVQCPRTPGK-KSCRLFQ-----DVSIDLETP 113
Query: 125 VADQQPRGSPMSSISHAMRHRASIPQYVALGELEFRKAFLILSYIGENSL-EEVITADEI 183
R S H IP +ALGELEF+KAFL+LSYIG SL EEVI+ DEI
Sbjct: 114 SPKFLRREENGGSSKH-------IPPLLALGELEFKKAFLLLSYIGGESLVEEVISGDEI 166
Query: 184 RGMRDLQMARFESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYL 243
R +DL M +E+EVW +LG++ ++RR L+ DSGKTH Y CH++ G+ FKG L
Sbjct: 167 RKWKDLPMVEYEAEVWNRLGQRYCPPKERRRPLEGDSGKTHYYQCHVAPDGSYKFKGYLL 226
Query: 244 NQTRTHLQRELGDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIAREGILVGLRCYHFF- 302
T THL + LGDDN+L VKFD+ LG ND YS Y IA+ GI+VGLR Y FF
Sbjct: 227 EDTGTHLHKVLGDDNVLTVKFDKVLG---VETYCNDLYSTYKGIAKNGIMVGLRRYRFFG 283
Query: 303 -------------------------------VFKDGGKEEKKKDPSTSPVKCYFVRMESS 331
VFKDGGKEEKKKD +T VKCYF+R +S+
Sbjct: 284 ANAMSSNTLQIIFIFVFKTAYSSLFTFPLKTVFKDGGKEEKKKDAATKGVKCYFIRTDST 343
Query: 332 AFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIER 391
A DM YI SGK++HEAR FMHV T+SS+ NYM+R SLILSKT LEVD + I E+
Sbjct: 344 ASNDMRNPYIFSGKSMHEARMHFMHVNTLSSLPNYMARFSLILSKTKTLEVDMTGITFEQ 403
Query: 392 IEDEPCRDKDG-NVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDR 450
I+D C D+D +V+ K+G+ IH+DGTG+ISEDLA CP ++K K ++ + I
Sbjct: 404 IDDIHCHDQDNKDVLDKNGKPCIHSDGTGYISEDLARMCPVNIFKGKSMRSNNIQSKIPN 463
Query: 451 KELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVK 510
E + EPPLL+Q R+F+NG AVKGT L NKKLPP T+Q+RPSMIKV
Sbjct: 464 IEGQGPCGQ---------EPPLLIQFRMFHNGYAVKGTFLTNKKLPPWTVQVRPSMIKVN 514
Query: 511 ADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGV 570
D+ +S+ TFNSLEVV TSN PR LSRNL+ALLSYGGVP FFL+ILRN L++++ +
Sbjct: 515 EDQTMSNFSTFNSLEVVTTSNPPRNARLSRNLVALLSYGGVPNDFFLNILRNTLEESKTI 574
Query: 571 FSNKRNALKVSFNYG 585
F ++R A KV N G
Sbjct: 575 FYSERAAFKVYRNPG 589
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 196/353 (55%), Positives = 261/353 (73%), Gaps = 6/353 (1%)
Query: 667 VYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFV 726
VYRNPGLHFGDIHVLKATYVK LED+VG SKYA+FFP GPRSL DEIAGGDFDGDMYF+
Sbjct: 584 VYRNPGLHFGDIHVLKATYVKALEDYVGNSKYAVFFPQKGPRSLGDEIAGGDFDGDMYFI 643
Query: 727 SRNPELLKHFKESERWMSTSK--NLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSL 784
SRNP+LL++FK SE W+S+SK + + ++ + S EELE ELFK+FL RFC + +
Sbjct: 644 SRNPKLLEYFKPSEPWVSSSKPSKIYSGRKPSELSEEELEEELFKMFLKARFCKRDVIGM 703
Query: 785 AADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVE 844
AADCW +MD LTLGDESA+EK K+N+L+LI+IYYDALDAPKK G KV++P DL+++
Sbjct: 704 AADCWLGIMDPLLTLGDESAKEKYERKKNILKLIDIYYDALDAPKK-GAKVDLPPDLEIK 762
Query: 845 KFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCF-DDGVPEACMTKWK 903
FP YM RD F STS+LG I++TV S+ A + +EI KL F D+ VP++ M K+
Sbjct: 763 NFPHYMERDPKRDFRSTSILGLIFDTVDSHNAEEPPPSEISKLWYFEDEPVPKSHMDKFT 822
Query: 904 GYYDQYRWEMKEAIDKC-TVEREEAAELVIEKYKQILYGAAEFEQSTRTLEEIYNEALAI 962
+Y+ YR EM +A+++ V++++ A VI++YKQ YGAA FE S ++LEE+Y +ALA+
Sbjct: 823 SWYENYRAEMSQAMEETDKVKKKQLANEVIQRYKQDFYGAARFEDSNKSLEELYPQALAL 882
Query: 963 YNITYDLAASRRQVSYCSFAWRVAGSALRKFYARRQGDRSMLCSASVLREICG 1015
YNI YD A VS C+F W+VAG L +FY ++ ++ ++ S SVL++I G
Sbjct: 883 YNIVYDFAFP-EGVSKCAFVWKVAGPVLCRFYLKKTQEKLVVASTSVLKKIWG 934
>gi|302782930|ref|XP_002973238.1| hypothetical protein SELMODRAFT_413790 [Selaginella moellendorffii]
gi|300158991|gb|EFJ25612.1| hypothetical protein SELMODRAFT_413790 [Selaginella moellendorffii]
Length = 878
Score = 407 bits (1046), Expect = e-110, Method: Compositional matrix adjust.
Identities = 289/890 (32%), Positives = 450/890 (50%), Gaps = 130/890 (14%)
Query: 153 ALGELEFRKAFLILSYIGENSLEEVITADEIRGMRDLQMARFESEVWEKLGRKNISQEDR 212
ALGEL+F K +LI + + + +E+R M+D++ FES + + + +
Sbjct: 45 ALGELDFYKRYLI-----QCLAKGRLGVEELRRMKDVKCEAFESYLCSLVNAR------Q 93
Query: 213 RMSLKWDSG---KTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGDDNILLVKFDEELG 269
R+ L + K+ MY C + G +++ PY RT LQR GDD +L V+F+ +
Sbjct: 94 RLPLNNSAPRVPKSLMYTCDVDEHGRISYQRPYYEDGRTPLQRAFGDDKVLQVRFNCQ-- 151
Query: 270 GHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEK-KKDPSTSPVKCYFVRM 328
S Y +I G VGLR + +FV K+ K + +K T + +FV
Sbjct: 152 -------GVTSPEMYRDIIERGFDVGLRHFEYFVHKEEKKRKNMRKVKQTRQQRSFFVCT 204
Query: 329 ESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRIN 388
+S A D+ + L +++ R MH+ TV + Y RL L LSKT
Sbjct: 205 KSIAASDLVDPHFLKFRSMDACRKYIMHIHTVPCLQLYNKRLQLALSKTWTAN------- 257
Query: 389 IERIEDEPCRDKDGNV-VYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERS 447
D G + V +G+ LIHTDGTGFISEDLA
Sbjct: 258 ---------HDPGGEIAVGCNGKPLIHTDGTGFISEDLA--------------------- 287
Query: 448 IDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMI 507
K++ N S+ E P L+QVRLFY+G AVKGTLL K L +TI R SM+
Sbjct: 288 ---KQVAVNTSE---------EYPALLQVRLFYHGIAVKGTLLTLKTLQHKTIVYRDSML 335
Query: 508 KVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDA 567
KVKAD L++ +FNSLE+ TS++P LSR +IALL GGVPE FF+ +++ A+ A
Sbjct: 336 KVKADPKLANCPSFNSLEICTTSHKPPVASLSRYVIALLLEGGVPESFFIQVVQEAIAKA 395
Query: 568 RGVFSNKRNALKVS--FNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQA 625
+ A ++ F++G M RMIL+GI L + +L++ L +++ + K
Sbjct: 396 MTPLQDIAAAHRLCSRFSFGDM-----PRRMILAGIPLTDHFLRNSLMTMIRTQLKRYAK 450
Query: 626 GKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEKVLVYRNPGLHFGDIHVLKATY 685
+P+ SYYLMG+ DPT L N+V I+L++G + KVLVY++PG+H GD+HV +AT+
Sbjct: 451 ANVPLEGSYYLMGSADPTNTLARNQVAILLENGPLHRHKVLVYKHPGMHPGDVHVFEATW 510
Query: 686 VKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMST 745
+ELE +G SKY I FP GPRS+ EIA D DGD+Y++ N ++ +K W
Sbjct: 511 NQELESCLGNSKYVIIFPTKGPRSVVHEIANSDLDGDLYWICTNEQVSNLYKPQLPWQEK 570
Query: 746 SKN-LSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESA 804
N +A + S E + S L +FL F P+ A S AA W MD++L+ ++
Sbjct: 571 RTNGTTAVPSCLGMSPEVIMSRLVAMFLRAIFKPNFAISRAATNWLIHMDKYLSTSFDNV 630
Query: 805 EEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKF-PCYMRRDESVS------ 857
E+ + +L L ++YY ALDA K+G V + + L +K P ++ + S +
Sbjct: 631 REREFRQNCLLELADLYYLALDA-DKTGEMVTIEDRLLCDKIKPHFLVEENSNNPNRRKI 689
Query: 858 ------FESTSVLGTIYNTVKSYEAVDRSVTEI-WKLPCFDDGVPEACMTK---WKGYYD 907
+ STS+ G IYN V E ++ E L +++ V ++ W+ +++
Sbjct: 690 QQQDNVYRSTSIFGKIYNLVT--EVIENEAKEFTGPLMFYEEFVYGNYLSYKDLWRQHFN 747
Query: 908 QYRWEMKEAIDKCTVEREEAAELVIEKYKQILY-GAAEFEQSTRTLEEIYNEALAIYNIT 966
YR E+ A+D+ + E+ + + +Y Q+LY G+ + + +++ +IY E+ AIY++
Sbjct: 748 NYRLEISLALDEKSAEKTDE---IAAQYCQMLYTGSTNLDGAKKSIYQIYQESCAIYSVV 804
Query: 967 YDLAASRRQVSYC------------------SFAWRVAGSALRKFYARRQ 998
+D V +C +FAW+VAG L + R+
Sbjct: 805 HD------HVQFCLDRARAGSENEKEWKPSFTFAWKVAGEPLCHLFCERR 848
>gi|302823993|ref|XP_002993644.1| hypothetical protein SELMODRAFT_431698 [Selaginella moellendorffii]
gi|300138572|gb|EFJ05336.1| hypothetical protein SELMODRAFT_431698 [Selaginella moellendorffii]
Length = 884
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 296/927 (31%), Positives = 458/927 (49%), Gaps = 156/927 (16%)
Query: 149 PQYVALGELEFRKAFLILSYIGENSLEEVITADEIRGMRDLQMARFESEVWEKLGRKNIS 208
P+ ALGEL+F K +LI + + + +E+R M+D++ FES + + +
Sbjct: 43 PEDRALGELDFYKRYLI-----QCLAKGRLGVEELRQMKDVKCEAFESYLCSLVNAR--- 94
Query: 209 QEDRRMSLKWDSG---KTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGDDNILLVKFD 265
+R+ L + K+ MY C + G +++ PY RT LQR GDD +L V+F+
Sbjct: 95 ---QRLPLNNSASGVPKSLMYTCDVDEHGRISYQRPYYEDGRTPLQRAFGDDKVLQVRFN 151
Query: 266 EELGGHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPS----TSPV 321
+ S Y +I G VGLR + +FV K+ E+K+K+ S T
Sbjct: 152 CQ---------GVTSPEMYRDIIERGFNVGLRHFEYFVHKE---EKKRKNMSKVKQTRQQ 199
Query: 322 KCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYM-----------SRL 370
+ +FV +S A D+ + L +++ R MH+ TV + Y SRL
Sbjct: 200 RSFFVCTKSIAASDLVDPHFLKFRSMDACRKYIMHIHTVPCLQLYNKRFSRTSSFLGSRL 259
Query: 371 SLILSKTMKLEVDFSRINIERIEDEPCRDKDGNV-VYKDGEALIHTDGTGFISEDLALKC 429
L LSKT D G + V +G+ LIHTDGTGFISEDLA +
Sbjct: 260 QLALSKTWTAN----------------HDPGGEIAVGCNGKPLIHTDGTGFISEDLAKQ- 302
Query: 430 PTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTL 489
E P L+QVRLFY+G AVKGTL
Sbjct: 303 ---------------------------------------EYPALLQVRLFYHGIAVKGTL 323
Query: 490 LLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYG 549
L K L +TI R SM+KVKAD L++ +FNSLE+ TS++P LSR +IALL G
Sbjct: 324 LTLKTLQHKTIVYRDSMLKVKADPKLANCPSFNSLEICTTSHKPPVASLSRYVIALLLEG 383
Query: 550 GVPEIFFLDILRNALDDARGVFSNKRNALKVS--FNYGGMDYDFTSARMILSGISLDEPY 607
GVPE FF+ +++ A+ A + A ++ F++G M RMIL+GI L + +
Sbjct: 384 GVPESFFIQVVQEAIAKAMTPLQDIAAAHRLCSRFSFGDM-----PRRMILAGIPLTDHF 438
Query: 608 LQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEKVLV 667
L++ L +++ + K +P+ SYYLMG+ DPT L N+V I+L++G + KVLV
Sbjct: 439 LRNSLMTMIRTQLKRYAKANVPLEGSYYLMGSADPTNTLARNQVAILLENGPLHRHKVLV 498
Query: 668 YRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVS 727
Y++PG+H GD+HV +AT+ +ELE +G SKY I FP GPRS+ EIA D DGD+Y++
Sbjct: 499 YKHPGMHPGDVHVFEATWNQELESSLGNSKYVIIFPTKGPRSVVHEIANSDLDGDLYWIC 558
Query: 728 RNPELLKHFKESERWMSTSKN-LSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAA 786
N ++ +K W N +A + S E + S L +FL F P+ A S AA
Sbjct: 559 TNEQVSNLYKPQLPWQEKRTNGTTAVPSCLGMSPEVIMSRLVAMFLRAIFKPNFAISRAA 618
Query: 787 DCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKF 846
W MD++L+ ++ E+ + +L L ++YY ALDA K+G V + + L +K
Sbjct: 619 TNWLIHMDKYLSTSFDNVREREFRQNCLLELADLYYLALDA-DKTGEMVTIEDRLLCDKI 677
Query: 847 -PCYMRRDESVS------------FESTSVLGTIYNTVKSYEAVDRSVTEI-WKLPCFDD 892
P ++ + S + + STS+ G IYN V E ++ E L +++
Sbjct: 678 KPHFLVEENSNNPNRRKIQQQDNVYRSTSIFGKIYNVVT--EVIENEAKEFTGPLMFYEE 735
Query: 893 GVPEACMTK---WKGYYDQYRWEMKEAIDKCTVEREEAAELVIEKYKQILY-GAAEFEQS 948
V ++ W+ +++ YR EM A+D+ + E+ + + +Y Q+LY G+ + +
Sbjct: 736 FVYGNYLSYKDLWRQHFNNYRLEMSLALDEKSAEKTDE---IAAQYCQMLYTGSTNLDGA 792
Query: 949 TRTLEEIYNEALAIYNITYDLAASRRQVSYC------------------SFAWRVAGSAL 990
+++ +IY E+ AIY++ +D V +C +FAW+VAG L
Sbjct: 793 KKSIYQIYQESCAIYSVVHD------HVQFCLDRARAGSENEKECRPSFTFAWKVAGEPL 846
Query: 991 RKFYARRQGDRSMLCSAS--VLREICG 1015
+ R+ + S + VL I G
Sbjct: 847 CHLFCERRKESGGTFSVARDVLDTIAG 873
>gi|224146916|ref|XP_002336366.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222834816|gb|EEE73265.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 320
Score = 369 bits (948), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 191/292 (65%), Positives = 223/292 (76%), Gaps = 18/292 (6%)
Query: 557 LDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILM 616
+ I+ NAL+DA G+ SNK AL+V+ NYG MD D A MI GI L+EPYLQ RLSILM
Sbjct: 1 MGIVNNALEDAHGILSNKNAALRVALNYGDMD-DNIVATMIGCGIPLEEPYLQCRLSILM 59
Query: 617 KEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEKVLVYRNPGLHFG 676
KEEKKSL+ GK+PV ESYYLMGT DPTG+L+S+EVCIIL GQ+S E VL+YRNPGLHFG
Sbjct: 60 KEEKKSLKGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQISGE-VLIYRNPGLHFG 118
Query: 677 DIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHF 736
DIH+LKATYV+ELEDFVG +KYAIFFPC GPRSLADE++GGDFDGDM+FVSRNP+LL+ F
Sbjct: 119 DIHILKATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDMFFVSRNPQLLETF 178
Query: 737 KESERWM-STSKNLSANKRLIDFSLEELESELFKLFLNTRFCPS-----NAKSL------ 784
K++E W STS N++ +FS EELE ELFKLFL RF PS NA L
Sbjct: 179 KQTEPWTPSTSTPNVPNRKPSEFSDEELEVELFKLFLRNRFQPSFITKFNASKLLATFSS 238
Query: 785 ----AADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSG 832
AAD W A+MDR LTLG++ AEE MKEN+ LI+IYYDALDAPKK G
Sbjct: 239 TVGVAADSWLAMMDRLLTLGNDCAEEIVCMKENINLLIDIYYDALDAPKKGG 290
>gi|168049572|ref|XP_001777236.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
gi|162671338|gb|EDQ57891.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
Length = 1040
Score = 363 bits (933), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 284/911 (31%), Positives = 446/911 (48%), Gaps = 115/911 (12%)
Query: 150 QYVALGELEFRKAFLILSYIGENSL--EEVITADEIRGMRDLQMARFESEVWEKLG-RKN 206
Q +ALG+LEF+K + LS +G+ L E+V+T ++I+ + L + V ++ K
Sbjct: 194 QQLALGKLEFKKFMVTLSCLGDLGLLPEKVLTLEQIKKLERLSLEDIPGYVSREVAINKG 253
Query: 207 ISQEDRRMSLK-WDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGDDNILLVKFD 265
+ E K W + + C++ G C FK T T L R GDD ++ V F+
Sbjct: 254 VRNEAFPYIRKDWLAKGLFSFECNVDKHGVCKFKCVKPRSTSTLLHRIFGDDRVMPVYFN 313
Query: 266 EELGGHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSP----- 320
E + K+ ++ R+GILVGLR Y + FKD GK + + T P
Sbjct: 314 E-----------FPTEDKF-QLVRDGILVGLRRYRLWSFKDSGKGDFRN--RTKPYAKDY 359
Query: 321 ---VKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKT 377
VKC+FV ES A +D+ + AR MH+ + ++ + SRL L LSK+
Sbjct: 360 QRAVKCFFVCTESLADVDLSDPNFKYFTRIEAARCHIMHIHAMPTMPRFASRLQLALSKS 419
Query: 378 MKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEK 437
+ +++ I +++I D + D + G+ + HT+GT IS D+A P V K +
Sbjct: 420 VTANLNWDEIEVKQIPDILSKTLDNS-----GKFMAHTEGTSEISPDVARLLPCSVCKGR 474
Query: 438 CTNDDSTERSIDRKELEANFSDVARTESHYGEP---PLLMQVRLFYNGTAVKGTLLLNKK 494
GEP P L+Q LF+ G A+KGT +N +
Sbjct: 475 V-----------------------------GEPKGYPTLVQGCLFWKGMAIKGTWQVNHQ 505
Query: 495 LPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSN--QPRKTYLSRNLIALLSYGGVP 552
L I RPSM+KV +D L D T S EVV T+ + + LS++LI LLS VP
Sbjct: 506 LKGLQILYRPSMVKVTSDPILKDIPTIKSFEVVNTNTCYKLEEARLSQDLIILLSINNVP 565
Query: 553 EIFFLDILRNALDDARGVFSNKRNALK----VSFNYGGMDYDFTSARMILSGISLDEPYL 608
FFL+++ AL+ R F+ + + S +Y D + RMI++ I + P +
Sbjct: 566 ASFFLELVEKALEKLRTFFTERGQVFRELKSCSPDYAVGD---QTLRMIMANIPMSNPQM 622
Query: 609 QHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPT--GILKSNEVCIILKDGQVSWEKVL 666
Q+ L + +++ L+ G LP+ +SYYLMGT DPT +LK NEV I+ K+G+ KVL
Sbjct: 623 QNNLKKITQDKIALLRKGCLPLPQSYYLMGTSDPTKEKVLKPNEVAIV-KNGEKVIGKVL 681
Query: 667 VYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFV 726
VY+NPG H+GD+H+ A + + L +VG +K+AIFF G R + DEIA D GD+++
Sbjct: 682 VYKNPGKHWGDVHIFDAVWDERLNPYVGPTKHAIFFSVRGNRPVVDEIANSDLCGDLFW- 740
Query: 727 SRNPELLKHFKESERWMSTSK--NLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSL 784
L+ F S W + N + + LE LF FL +RF P S
Sbjct: 741 -----LISLFTPSLPWKRIGEKINYPIGDGPSNLTSRALEYTLFDKFLKSRFTPYKPMSQ 795
Query: 785 AADCWQAVMDRFLTL--GDESAEEKAAMKENMLRLINIYYDALDAPKK-----------S 831
A W A MDR+L+L DE ++E + E++ LI+I+Y ALDA K +
Sbjct: 796 AGIFWTAHMDRYLSLKDADEYSDELELISESLEELIDIFYRALDADKTGEELCLHRHTFA 855
Query: 832 GIKVEVPEDLKVEKFPCYMRRDES--VSFESTSVLGTIYN-TVKSYEAVDRSVTE-IWKL 887
+ V++P L+ + FP +++ ++ + STS+LG IY+ V++ + + E I
Sbjct: 856 WMSVKLPRRLEPDCFPHFLKEIQTNRTYYTSTSILGQIYDMVVRNVDGIGCKPEETIAYD 915
Query: 888 PCFDDGVPEACMTKWKGYYDQYRWEMKEAIDKCTVEREEAAELVIEKYKQILYGAAEFEQ 947
P F+ G + M +W+G QY ++K AI +R VI Y++IL G
Sbjct: 916 PKFEYGRFDRYMERWRGLLQQYNKDIKAAIKNHEEDR------VIAYYQEILQG------ 963
Query: 948 STRTLEEIYNEALAIYNITYDLAA---SRRQVSYCSFAWRVAGSALRKFYARRQGDRSML 1004
+ +++ +++ EA A+Y + ++ A + + A VA L YA + +
Sbjct: 964 TNKSITQMWEEASALYAVNHEHAVMTLRKGHLPSLHCALTVALEYLCGIYASNEERKPYT 1023
Query: 1005 CSASVLREICG 1015
SAS +I G
Sbjct: 1024 LSASAKEDIFG 1034
>gi|168064128|ref|XP_001784017.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
gi|162664466|gb|EDQ51185.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
Length = 1042
Score = 357 bits (915), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 287/911 (31%), Positives = 442/911 (48%), Gaps = 110/911 (12%)
Query: 149 PQYVALGELEFRKAFLILSYIGENSL--EEVITADEIRGMRDLQMARFESEVWEKLG--R 204
PQ +ALG+L+F K + LS +GE L E+V+T ++I+ + L + V ++ R
Sbjct: 192 PQ-LALGKLDFEKFMVTLSCLGELDLQPEKVLTLEQIKKLERLDLEDVAGYVSREVAISR 250
Query: 205 KNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGP-----YLN-------QTRTHLQR 252
+E R+S +W + + C++ G C FK LN T L R
Sbjct: 251 GVRDEEVPRISKEWLTKGPFSFECNVDKHGVCKFKASTSTSMILNVEVVKPRPASTLLHR 310
Query: 253 ELGDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEE- 311
G+D ++ V F+E + + K+ ++ R+GILVGLR Y + FKD GKEE
Sbjct: 311 TFGEDRVMPVYFNE-----------SPTEDKF-QLVRDGILVGLRRYRLWTFKDSGKEEF 358
Query: 312 -KKKDPSTS----PVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANY 366
+ P VKC F+ ES A +D+ KT+ AR +H+ TV +++ +
Sbjct: 359 SNRSKPYDKDYQRAVKCIFICTESLADVDLADSNFKYFKTIEAARCHIVHIHTVPTMSKF 418
Query: 367 MSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLA 426
SRL L LSK++ +++ I + +I D D + G+ + HT+GT IS D+A
Sbjct: 419 ASRLQLALSKSVTANLNWDEIKVRQIPDILSTTLDNS-----GKFMSHTEGTAEISPDVA 473
Query: 427 LKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVK 486
P V+K K P L+Q RLF+ G A+K
Sbjct: 474 RLIPCSVFKGKGY-------------------------------PTLIQGRLFWKGMAIK 502
Query: 487 GTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSN---QPRKTYLSRNLI 543
GT +N +L I RPSM+KV D L D T NS E+V T+ + LS++LI
Sbjct: 503 GTWQVNHQLKGLQILYRPSMVKVTTDAALKDFPTINSFEIVNTNTCYKLKEEAKLSQDLI 562
Query: 544 ALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDF--TSARMILSGI 601
LLS VP FFL+ + AL++ F+ + + DYD + RMI++ I
Sbjct: 563 FLLSVNNVPASFFLEHVEKALENLHSFFTTRGQVFR-ELKRCSQDYDVGDQTLRMIMANI 621
Query: 602 SLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTG--ILKSNEVCIILKDGQ 659
++ P +Q L + +++ L+ G +P+ +S YLMGT DPT +LK NEV +I K+G
Sbjct: 622 PMNNPQMQKNLKKISQDKIALLRKGCVPLPQSCYLMGTCDPTKERVLKPNEVAVI-KNGD 680
Query: 660 VSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDF 719
KVLVY+NPG H+GD+HV A + + L +VG + IFF G R + DEIA D
Sbjct: 681 KVLGKVLVYKNPGKHWGDVHVFDAVWDERLNPYVGPANQTIFFSVRGNRPVVDEIANSDL 740
Query: 720 DGDMYFVSRNPE----LLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTR 775
DGD Y+V N + L +F + A L S L+ + L
Sbjct: 741 DGDFYWVCFNTQATNSFLDYFSSKVVFCQLIGVRIAAVDLSFHSKPTLDENRGEDKLPGW 800
Query: 776 FCPSNAKSLAADCWQAVMDRFLTL--GDESAEEKAAMKENMLRLINIYYDALDAPKKSGI 833
C L+A W A MDR+LTL DE +EE + E +L LI+I+Y ALDA K+G
Sbjct: 801 EC--KPMPLSATYWIAHMDRYLTLKYADEYSEELELLSETILELIDIFYRALDA-DKTGE 857
Query: 834 KVEVPEDLKVEKFPCYMRRDESVS----FESTSVLGTIYNTV-KSYEAVD-RSVTEIWKL 887
+V++ L+ + +P +MR+ S + STS+LG IY+ V K+ + + R I
Sbjct: 858 EVKLRRGLEPKCYPHFMRKQNQTSRRTYYTSTSILGQIYDMVDKNADRLGYRPEETIAYD 917
Query: 888 PCFDDGVPEACMTKWKGYYDQYRWEMKEAIDKCTVEREEAAELVIEKYKQILYGAAEFEQ 947
P F+ G + + W+G QY + + A ++R VI +Y++IL G
Sbjct: 918 PKFEFGRFDRYIENWRGLLQQYNKDTQAAFKNNELDR------VIARYQEILKG------ 965
Query: 948 STRTLEEIYNEALAIYNITYDLAASRRQVSYC---SFAWRVAGSALRKFYARRQGDRSML 1004
+++ ++ EA A+Y + ++ A + Y + AW VA L + YA ++ + +
Sbjct: 966 QNKSIIQVLEEASALYIVNHEHAEMTLRKGYTPTLNCAWNVALEYLCEIYASQEERKPYI 1025
Query: 1005 CSASVLREICG 1015
SAS +I G
Sbjct: 1026 LSASAREDIFG 1036
>gi|414588061|tpg|DAA38632.1| TPA: hypothetical protein ZEAMMB73_690745 [Zea mays]
Length = 462
Score = 351 bits (900), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 204/470 (43%), Positives = 286/470 (60%), Gaps = 23/470 (4%)
Query: 557 LDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILM 616
+++L NA++ + R+ALK+++ Y M+ D RMI SGI L+EPYL RLS +
Sbjct: 1 MELLHNAIEGVNNARYSFRHALKLAYGYANME-DSMLERMIHSGIPLEEPYLLSRLSFMA 59
Query: 617 KEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEKVLVYRNPGLHFG 676
K+E K + GKLP+ E YYLMGT DPTG LK NEVC+IL GQ S + VLV+++PGLHFG
Sbjct: 60 KQEMKVFREGKLPIDECYYLMGTTDPTGTLKPNEVCVILDSGQYSGD-VLVFKHPGLHFG 118
Query: 677 DIHVLKATYVKELE-DFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKH 735
DIH+L A + LE +F+G SK AI FP +G RSLADE+A DFDGD ++VSRN LLK
Sbjct: 119 DIHILTARQIDGLEKNFIGYSKNAILFPTSGQRSLADEMANSDFDGDEFWVSRNNMLLKT 178
Query: 736 F-KESERWMSTSKNLSANKRLI---DFSLEELESELFKLFLNTRFCPSNAKSLAADCWQA 791
F K SE W+ K RL D + LE LF L T F P+ K LA DCW A
Sbjct: 179 FEKRSEPWVELLKLKETQHRLSKPGDLNELILERVLFNECLTTMFIPNYTKGLAPDCWLA 238
Query: 792 VMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMR 851
MDR LT G + +EK ++ ENM++L+++YY ALD G KV+V L+V+ +P +M
Sbjct: 239 HMDRLLTEGVDQ-DEKKSIVENMIKLVDLYYAALD-----GHKVDVDRHLRVKAYPHFME 292
Query: 852 RDESVSFESTSVLGTIYNTVKSYEA--VDRSVTEIWKLPCFD--DGVPEACMTKWKGYYD 907
+ S+ S+S+LG IY+ + A D + +I LPCF + PE C + W+ Y
Sbjct: 293 KKGFESYHSSSILGRIYDETEEIIAQQCDEQI-QITTLPCFSEVEATPE-CTSLWEHRYQ 350
Query: 908 QYRWEMKEAIDKCTVEREEAAELVIEKYKQILYGAAEFEQSTRTLEEIYNEALAIYNITY 967
+Y + + D E+ + + + + YK +LY A E E+++R L +++ EA AIY I Y
Sbjct: 351 EYLTKSRGLFDLGKEEKNDEFQKLYQHYKHLLYDADELEETSRDLSDVFMEACAIYRIVY 410
Query: 968 DLAASRRQVSYCSFAWRVAGSALRKF----YARRQGDRSMLCSASVLREI 1013
+ A R VS C F W VAG+AL YA ++G+++ LC SV+R++
Sbjct: 411 ERAWCTRSVSRCRFVWNVAGAALCHLHATKYAAQRGEKTALCPLSVIRQL 460
>gi|110738636|dbj|BAF01243.1| hypothetical protein [Arabidopsis thaliana]
Length = 339
Score = 323 bits (829), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 187/346 (54%), Positives = 242/346 (69%), Gaps = 12/346 (3%)
Query: 675 FGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLK 734
FGDIH+LKATYVK LE++VG SK+A+FFP GPRSL DEIAGGDFDGDMYF+SRNPELL+
Sbjct: 1 FGDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLE 60
Query: 735 HFKESERWMSTSKNLSAN--KRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAV 792
+FK SE W+S + +N + S EELE ELF++FL F SN +AAD W +
Sbjct: 61 NFKPSEPWVSLTPPSKSNSGRAPSQLSPEELEEELFEMFLTAGFHASNVIGIAADSWLTI 120
Query: 793 MDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRR 852
MDRFL LGD+ AEEKA MK+ ML LI+IYYDALDAPKK G KV +P LK + FP YM R
Sbjct: 121 MDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKK-GDKVYLPNKLKPDIFPHYMER 179
Query: 853 DESVSFESTSVLGTIYNTVKSYEAVDRS-VTEIWKLPCF-DDGVPEACMTKWKGYYDQYR 910
D+ F+STS+LG I++ VKS + S +EI KLPCF D+ V E M K + +YD YR
Sbjct: 180 DK--KFQSTSILGLIFDFVKSQTTEEPSPSSEISKLPCFEDEPVSEFHMQKCRLWYDNYR 237
Query: 911 WEMKEAIDKCTVEREEAAELVIEKYKQILYGAAEFEQSTRTLEEIYNEALAIYNITYDLA 970
EM +A+ +++E+A VI++YKQ YGAA FE S ++LEE+Y +ALA+Y I YD A
Sbjct: 238 TEMTQAM---KTDKDESANEVIQRYKQEFYGAAGFEDSKKSLEELYPQALALYKIVYDYA 294
Query: 971 ASRRQVSYCSFAWRVAGSALRKFYA-RRQGDRSMLCSASVLREICG 1015
VS C F W+VAG L +FY ++ ++ ++C+ SVL+E+ G
Sbjct: 295 I-HAGVSKCRFVWKVAGPVLCRFYLNKKMQEKCLVCAPSVLKELWG 339
>gi|115435090|ref|NP_001042303.1| Os01g0197900 [Oryza sativa Japonica Group]
gi|56201770|dbj|BAD73220.1| unknown protein [Oryza sativa Japonica Group]
gi|56201877|dbj|BAD73327.1| unknown protein [Oryza sativa Japonica Group]
gi|113531834|dbj|BAF04217.1| Os01g0197900 [Oryza sativa Japonica Group]
Length = 387
Score = 320 bits (820), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 181/387 (46%), Positives = 252/387 (65%), Gaps = 17/387 (4%)
Query: 637 MGTVDPTGILKSNEVCIILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELE-DFVGT 695
M T DPTG L+ NEVC+IL++GQ S + VLVY++PGLHFGDIHVLKATY+++LE ++VG
Sbjct: 1 MDTTDPTGTLRPNEVCVILENGQFSGD-VLVYKHPGLHFGDIHVLKATYIRDLEKEYVGY 59
Query: 696 SKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWM-STSKNLSANKR 754
+KYAI FP +GPRSLADE+A DFDGD+Y+VS+NP+LL+HFK SE W+ + + K+
Sbjct: 60 AKYAILFPISGPRSLADEMANSDFDGDIYWVSKNPKLLEHFKPSEPWVQAIKPKKTKQKK 119
Query: 755 LIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENM 814
D + +LE LF FL TRF PS A AAD W A MDR LT + E+K ++E M
Sbjct: 120 PQDCNESKLERLLFHEFLKTRFTPSFALGTAADSWLAYMDRLLTDSLDEIEKK-LIEEKM 178
Query: 815 LRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNT---V 871
L+L+++YY ALDAP K+G KV +P DL V+++P +M R S S+ S+S+LG IY+ V
Sbjct: 179 LKLVDLYYLALDAP-KTGNKVNIPSDLMVKQYPHFMGR--SFSYHSSSILGQIYDKAEDV 235
Query: 872 KSYEAVDRSVTEIWKLPCF-DDGVPEACMTKWKGYYDQYRWE----MKEAIDKCTVEREE 926
+S + + + LPCF + P A W+ Y++Y + + +DK ER
Sbjct: 236 ESLRSCNVQPIGVSLLPCFMEREAPPAARHLWQHRYEEYLTDSTMLYRAMVDK--EERNM 293
Query: 927 AAELVIEKYKQILYGAAEFEQSTRTLEEIYNEALAIYNITYDLAASRRQVSYCSFAWRVA 986
+ + EKYK +LY A+EFEQ+ R +++++EA IY I Y+ A S C FAW+VA
Sbjct: 294 KFQELYEKYKHMLYDASEFEQTQRDPDDVFSEACVIYQIVYEKARWSNDASRCGFAWKVA 353
Query: 987 GSALRKFYARRQGDRSMLCSASVLREI 1013
G AL FYA + + LCS +LR+I
Sbjct: 354 GRALCHFYALKNEGDTALCSLPLLRKI 380
>gi|449485903|ref|XP_004157306.1| PREDICTED: probable RNA-dependent RNA polymerase 4-like [Cucumis
sativus]
Length = 560
Score = 317 bits (812), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 211/498 (42%), Positives = 285/498 (57%), Gaps = 37/498 (7%)
Query: 13 VSLPLSVEQLISKIYTEQNKLPPDDGARRSLASLGEDAALDVLRTIASDKIKYSFSGYIN 72
VSLP SVEQ + I ++ PD R+LAS+GE AALD L I+ ++ + SG+I
Sbjct: 58 VSLPPSVEQFLLHICKLHDQPLPDTEVLRALASVGEVAALDALHKISCSTVR-NLSGFIL 116
Query: 73 YLVKKRNNNGSPLKRVCFSPSSPQQNRSPVTVTTVRLLNLPQGTDYVVKQSP-------- 124
+LV+K + K V SP ++SP + V L P + QSP
Sbjct: 117 HLVRKDSCASPQNKMVRVSP-----HQSPSSSCPVSQLQSPSTCSVSLHQSPSTFSVCSG 171
Query: 125 --------VADQQPRGSPMSSISHAMRHRASIPQYVALGELEFRKAFLILS---YIGENS 173
+ Q P S S ++ RA I Q+VALGELEFRK L+ + N
Sbjct: 172 QGLGTAENASLQPPTPEKSGSFSSSVLDRARISQFVALGELEFRKITLLKKRPWLLYGNQ 231
Query: 174 LEEV---ITADEIRGMRDLQMARFESEVWEKL-GRKNISQEDRRMSLK--WDSGKTHMYH 227
+E + I+ + G+ +W + G + D+ + L+ S K H+
Sbjct: 232 VERLSLPISCSMLIGIVGKHTFTTVMLLWMGVAGSRQQQYVDKNLDLRALLVSAKKHVKL 291
Query: 228 CHISTKGNCTF--KGPYLNQTRTHLQRELGDDNILLVKFDEELGGHRSSNNWNDSYSKYN 285
++ F GP+LN T+THLQR LGDDN+L+VKF E+ SN+ S+ Y+
Sbjct: 292 AGMALYQPSIFIHAGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTPLSNHSGGSFYAYS 351
Query: 286 EIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGK 345
+IAR+GIL+GLR YHFFVFKDGGKEEKKK+P+TS VKCYFVRMES A+ID Y LS +
Sbjct: 352 KIARDGILLGLRRYHFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYIDKIEPYKLSNR 411
Query: 346 TVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVV 405
TV EAR +FMH VSS+A+YM+R SLILSKT+ L++D S +N++RI D PC+D GNV+
Sbjct: 412 TVFEARSLFMHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRIGDIPCKDIYGNVI 471
Query: 406 YKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTES 465
Y+DG+ LIHTDGTGFISEDLAL+CP V+K + +D + R F + +
Sbjct: 472 YRDGKPLIHTDGTGFISEDLALECPMNVFKGQAKHDADLKAIWQRIPAFEGFQNKTLQLT 531
Query: 466 HYG----EPPLLMQVRLF 479
G EPPLL+Q RLF
Sbjct: 532 LPGLELREPPLLIQFRLF 549
>gi|224093864|ref|XP_002310025.1| hypothetical protein POPTRDRAFT_562704 [Populus trichocarpa]
gi|222852928|gb|EEE90475.1| hypothetical protein POPTRDRAFT_562704 [Populus trichocarpa]
Length = 305
Score = 251 bits (642), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 146/307 (47%), Positives = 194/307 (63%), Gaps = 13/307 (4%)
Query: 5 AVVSQQGVVSLPLSVEQLISKIYTEQNKLPPDDGARRSLASLGEDAALDVLRTIASDKIK 64
A ++ +V LP VE+LI+KI EQN+ P + R +LASLGE+ AL++L I+ +I+
Sbjct: 2 AEINNDKIVPLPCVVEELIAKICREQNRRPLETNTRLTLASLGEEVALNILWRISGQEIR 61
Query: 65 YSFSGYINYLVKKRNNN-----GSPLKRVCFSPSSPQ-QNRSPVTVTTVRLLNLPQGTDY 118
SF G++ +L K+ + N SP SPS Q QNRSP+T T RLL Q
Sbjct: 62 KSFDGFVLHLAKQFSPNINASSSSPNIHSSLSPSPQQPQNRSPITTT--RLLMNSQSDSG 119
Query: 119 VVKQSPVADQQPRGSPMSSISHAMRHRASIPQYVALGELEFRKAFLILSYIGENSLEEVI 178
QSP++ + S M S + VALGELEFRKAFLILSY+G +LEEV+
Sbjct: 120 A--QSPISLKLEGSSTMDSQRQRGNESTTSQHLVALGELEFRKAFLILSYLGGKNLEEVV 177
Query: 179 TADEIRGMRDLQMARFESEVWEKLG--RKNISQEDRRMSLKWDSGKTHMYHCHISTKGNC 236
+ D+IRG +DL M FES++WE G R I +EDR L WDSGKTH+YHCH+ G+
Sbjct: 178 SVDQIRGYKDLPMRTFESKIWEAFGCRRDYIKEEDRVKYLDWDSGKTHIYHCHVDPDGSY 237
Query: 237 TFKGPYLNQTRTHLQRELGDDNILLVKFDEELGGHRS-SNNWNDSYSKYNEIAREGILVG 295
FKGPYL++ R LQR LGDDNIL+VKF+E S S++ ++ ++KYN++ REGI VG
Sbjct: 238 RFKGPYLSKQRNVLQRTLGDDNILMVKFEEVKDERYSVSSSLDNYFAKYNKVLREGIHVG 297
Query: 296 LRCYHFF 302
LRCY FF
Sbjct: 298 LRCYRFF 304
>gi|224144332|ref|XP_002336131.1| hypothetical protein POPTRDRAFT_584507 [Populus trichocarpa]
gi|222873590|gb|EEF10721.1| hypothetical protein POPTRDRAFT_584507 [Populus trichocarpa]
Length = 211
Score = 202 bits (515), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 111/222 (50%), Positives = 143/222 (64%), Gaps = 13/222 (5%)
Query: 793 MDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRR 852
MDR LTLG++ EE A +K+N+ LI+IYYDALDAPKK G K+EVPE LK E FP +M +
Sbjct: 1 MDRLLTLGNDCTEEIACVKKNINLLIDIYYDALDAPKKGGRKIEVPEALKAELFPHFMEK 60
Query: 853 DESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCFDDGVPEACMTKWKGYYDQYRWE 912
E ++ STS+LG IY+ VK+YE +D S V E+C+ KWKG Y QYR E
Sbjct: 61 HEKKTYRSTSILGKIYDKVKAYEDMDLS-----------SNVHESCLVKWKGLYGQYRTE 109
Query: 913 MKEAIDKCTVEREEAAELVIEKYKQILYGAAEFEQSTRTLEEIYNEALAIYNITYDLAAS 972
M+ A+ + EA E VI+KYK+ILY AAEF S R EEI+ EA A+Y +TY+ A
Sbjct: 110 MRNALQAGKEKNNEANE-VIKKYKEILYEAAEFNLSRRRDEEIFEEARALYQVTYNHAKR 168
Query: 973 RRQVSYCSFAWRVAGSALRKFYA-RRQGDRSMLCSASVLREI 1013
+ V C FAWRVAG AL Y + Q +R ++CS S L+ I
Sbjct: 169 QGAVGKCGFAWRVAGLALCTLYVLKNQEERPLICSPSALKGI 210
>gi|242072308|ref|XP_002446090.1| hypothetical protein SORBIDRAFT_06g001590 [Sorghum bicolor]
gi|241937273|gb|EES10418.1| hypothetical protein SORBIDRAFT_06g001590 [Sorghum bicolor]
Length = 181
Score = 193 bits (491), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 100/182 (54%), Positives = 130/182 (71%), Gaps = 1/182 (0%)
Query: 474 MQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQP 533
MQVRLFYNG AVKGTLL++K++ TI IRPSM+KVKAD LS ++ +SLE+V TS+Q
Sbjct: 1 MQVRLFYNGYAVKGTLLVDKRIRNDTIVIRPSMVKVKADPRLSQMKSLSSLEIVNTSHQS 60
Query: 534 RKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTS 593
+T SR LIALL YGGV E +F+++L NA++ + R+ALK++ Y M+ D
Sbjct: 61 NRTSTSRVLIALLHYGGVKEEYFMELLHNAIEGVENARYSFRHALKLASGYANME-DSML 119
Query: 594 ARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCI 653
RMI SGI L+EPYL RLS + K+E K + GKLP+ E Y+LMGT DPTG +K NEVC+
Sbjct: 120 ERMIHSGIPLEEPYLLSRLSFMAKQEMKGFREGKLPIDECYHLMGTTDPTGTVKPNEVCL 179
Query: 654 IL 655
IL
Sbjct: 180 IL 181
>gi|224093872|ref|XP_002310028.1| hypothetical protein POPTRDRAFT_654879 [Populus trichocarpa]
gi|222852931|gb|EEE90478.1| hypothetical protein POPTRDRAFT_654879 [Populus trichocarpa]
Length = 189
Score = 186 bits (473), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 95/181 (52%), Positives = 124/181 (68%), Gaps = 2/181 (1%)
Query: 834 KVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCFDDG 893
++EVPE LK E FP +M ++E ++ STS+LG IY+ VK+YE +D S ++WKLPCFD
Sbjct: 9 QIEVPEGLKAELFPHFMGKNEKKTYRSTSILGKIYDKVKAYEDMDLSSNDVWKLPCFDGE 68
Query: 894 VPEACMTKWKGYYDQYRWEMKEAIDKCTVEREEAAELVIEKYKQILYGAAEFEQSTRTLE 953
V E+C+ KWKG Y QYR EM+ A+ + EA E VI+KYK+ILY AAEF S R E
Sbjct: 69 VHESCLVKWKGLYGQYRTEMRNALQAGKEKNNEANE-VIKKYKEILYEAAEFNLSRRRDE 127
Query: 954 EIYNEALAIYNITYDLAASRRQVSYCSFAWRVAGSALRKFYA-RRQGDRSMLCSASVLRE 1012
EI+ EA A+Y +TY+ A S+ V CSFAWRVAG AL Y + QG+R M+CS S L+
Sbjct: 128 EIFEEARALYQVTYNHAKSQGVVGNCSFAWRVAGLALCTLYVLKNQGERPMICSPSALKG 187
Query: 1013 I 1013
I
Sbjct: 188 I 188
>gi|115435094|ref|NP_001042305.1| Os01g0198100 [Oryza sativa Japonica Group]
gi|113531836|dbj|BAF04219.1| Os01g0198100, partial [Oryza sativa Japonica Group]
Length = 456
Score = 159 bits (402), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 80/184 (43%), Positives = 112/184 (60%), Gaps = 25/184 (13%)
Query: 149 PQYVALGELEFRKAFLILSYIGENS--------------LEEVITADEIRGMRDLQMARF 194
PQ +ALGELEFRK F+I +Y+ N +E+V++ D IR ++ + MA+F
Sbjct: 277 PQMLALGELEFRKIFMIFAYLSWNKKGVKPPLSTPKSSKIEDVLSVDSIRSLKSMSMAQF 336
Query: 195 ESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCT---FKGPYLNQTRTHLQ 251
ES +W G NIS DR +L G + +YHC++ +G FKGPY+ RTHLQ
Sbjct: 337 ESRIWSTFGHDNISSSDRAKNLDSGPGMSKVYHCNVEIRGGTVVKIFKGPYIENRRTHLQ 396
Query: 252 RELGDDNILLVKFDEELGGHRSSNNWNDSYS---KYNEIAREGILVGLRCYHFFVFKDGG 308
+ LGDDN+L+VKF E SS+ D + Y+++A EGI++GLRCY FF++KDGG
Sbjct: 397 KVLGDDNVLVVKFME-----ISSDTETDLSTYLEHYHKVAEEGIVLGLRCYRFFLYKDGG 451
Query: 309 KEEK 312
KE K
Sbjct: 452 KENK 455
>gi|414588062|tpg|DAA38633.1| TPA: hypothetical protein ZEAMMB73_906920 [Zea mays]
Length = 343
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 90/200 (45%), Positives = 117/200 (58%), Gaps = 39/200 (19%)
Query: 303 VFKDGGKEEKKKDP-------STSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFM 355
V+KD GKE KKKD TSPV+CYF+ +S D Y + + R +FM
Sbjct: 140 VYKDPGKETKKKDSEQGDIKKCTSPVRCYFICTKSGWRGDEAYI------PIDKCRKLFM 193
Query: 356 HVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHT 415
H+ T ++ANYM R LILSKT+ L+VD S I++ I+DEPCRD+ GN+V DG+ LIHT
Sbjct: 194 HIHTAPTIANYMKRFHLILSKTLTLDVDLSTIDVILIDDEPCRDEHGNIVMLDGKRLIHT 253
Query: 416 DGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQ 475
DGTGFISE+LA KCP+ + K K ++ H GE
Sbjct: 254 DGTGFISENLAKKCPSRIIKGK----------------------KSKVYMHQGE----TT 287
Query: 476 VRLFYNGTAVKGTLLLNKKL 495
VRLFYNG AVKGTLL++K++
Sbjct: 288 VRLFYNGYAVKGTLLVDKRI 307
>gi|224114525|ref|XP_002332351.1| hypothetical protein POPTRDRAFT_587377 [Populus trichocarpa]
gi|222832072|gb|EEE70549.1| hypothetical protein POPTRDRAFT_587377 [Populus trichocarpa]
Length = 121
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/112 (63%), Positives = 83/112 (74%), Gaps = 2/112 (1%)
Query: 328 MESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRI 387
MES A +D IL GKT+ +AR +FMHV +SS++NYM+R SLILSKTM LEVD S +
Sbjct: 1 MESVASVD-NQDNILCGKTIRQARSVFMHVDNLSSLSNYMARFSLILSKTMNLEVDLSFV 59
Query: 388 NIERIEDEPCRDKDGNVVY-KDGEALIHTDGTGFISEDLALKCPTYVYKEKC 438
+I+ I DEPCRDKDGN VY DG+ LIHTDGTGFIS DLALKCP K C
Sbjct: 60 DIKPIADEPCRDKDGNAVYGTDGKPLIHTDGTGFISHDLALKCPKNQVKGTC 111
>gi|224093870|ref|XP_002310027.1| hypothetical protein POPTRDRAFT_562706 [Populus trichocarpa]
gi|222852930|gb|EEE90477.1| hypothetical protein POPTRDRAFT_562706 [Populus trichocarpa]
Length = 216
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 122/214 (57%), Gaps = 11/214 (5%)
Query: 5 AVVSQQGVVSLPLSVEQLISKIYTEQNKLPPDDGARRSLASLGEDAALDVLRTIASDKIK 64
A ++ +V LP +VE+LI+KI E+++ P + R +LASLGE+ AL++LR I+ +I+
Sbjct: 2 AEINNDKIVPLPCAVEELITKICREKDRRPLETNTRSTLASLGEEVALNILRRISGLEIR 61
Query: 65 YSFSGYINYLVKKRNNN----GSPLKRVCFSPSSPQQNRSPVTVTTVRLLNLPQGTDYVV 120
SF G++ +L K+ + N S SPQQ P T RLL Q
Sbjct: 62 KSFDGFVLHLAKQCSPNINASSSSPHMHSSLSPSPQQ---PQNRTNTRLLMNSQSDSGA- 117
Query: 121 KQSPVADQQPRGSPMSSISHAMRHRASIPQYVALGELEFRKAFLILSYIGENSLEEVITA 180
QSP + S M S + VALGELEFRKAFLILSY+G +LEEV++A
Sbjct: 118 -QSPTPLKLEGSSTMDSQRQRGSESTTSQHLVALGELEFRKAFLILSYLGGKNLEEVVSA 176
Query: 181 DEIRGMRDLQMARFESEVWEKLG--RKNISQEDR 212
D+IRG +DL M FES++WE G R I +EDR
Sbjct: 177 DQIRGYKDLPMETFESKIWEAFGCRRDYIKEEDR 210
>gi|90823307|gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 137 bits (344), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 177/699 (25%), Positives = 291/699 (41%), Gaps = 122/699 (17%)
Query: 192 ARFESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQ 251
+R+ E ++ R Q +SL D G ++ I T F GP +N + L+
Sbjct: 335 SRWLFEEYKNFSRSRKYQGSPTISL--DEGLVYVRRVQI-TPSRVYFCGPEINVSNRVLR 391
Query: 252 RELGD-DNILLVKF-DEELGGHRSSN-----NWNDSYSKYNEIAREGILVGLRCYHFFVF 304
+ D DN L + F DEEL S+N Y + R GI++G + + F F
Sbjct: 392 QFHNDIDNFLRISFVDEELEKIHSTNVQARGRRTGIYKRILSTLRNGIVIGNKRFEFLAF 451
Query: 305 KDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVA 364
S+S ++ E+SA++ + G T + R + + +VA
Sbjct: 452 ------------SSSQLR------ENSAWMFASRK----GLTAADIRSWMGNFSKIRNVA 489
Query: 365 NYMSRLSLILSK-TMKLEVDFSRIN-IERIEDEPCRDKDGNVVYKDGEALIHTDGTGFIS 422
Y +RL S T L V IN I IE + KDG + DG G IS
Sbjct: 490 KYAARLGQSFSSSTETLSVSKDEINLIPDIE-----------IMKDGIKYVFPDGIGKIS 538
Query: 423 EDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNG 482
+ A K + CT P Q+R+
Sbjct: 539 AEFAKKVAAKCRLKGCT-------------------------------PSAFQIRI---- 563
Query: 483 TAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSN-QPRKTYLSRN 541
KG + ++ + +R SM K +++ L+V+ S QP +L+R
Sbjct: 564 GGFKGVVAIDPT-SSWKLSLRKSMEKYESEN--------TKLDVLAWSKYQP--CFLNRQ 612
Query: 542 LIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGI 601
LI LLS GVP+ F R +D + ++ A + + M+L G
Sbjct: 613 LITLLSTLGVPDYAFEKKQREVVDQLNALLTDPLEAQEALELMSPGENTNILKEMLLCGY 672
Query: 602 SLD-EPYLQHRLSILMKEEKKSLQA-GKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQ 659
D EP+L L + L+ ++ V + +MG +D T L +V + +
Sbjct: 673 KPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMGCLDETRTLNYGQVFVQFSGSR 732
Query: 660 -----VSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEI 714
+ KV+V +NP LH GD+ VL+A V +L V + FP G R +E
Sbjct: 733 SERRFIVQGKVIVAKNPCLHPGDVRVLRAVNVPDLHHMVD----CVVFPQKGTRPHPNEC 788
Query: 715 AGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNT 774
+G D DGD+YFV +PEL+ + + S + S K + ++EE+E E F T
Sbjct: 789 SGSDLDGDVYFVCWDPELIPYKQIDPMDYSPA---STTKLDHEVTIEEIE-EYF-----T 839
Query: 775 RFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIK 834
+ +++ + ++ A DR E AM L L ++ A+D PK +G+
Sbjct: 840 NYIVNDSLGIISNAHTAFADR---------EPGKAMSRPCLELAKLFSIAVDFPK-TGVP 889
Query: 835 VEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKS 873
E+P++L+V++FP +M + + S++S +V+G ++ VK+
Sbjct: 890 AEIPQELRVKEFPDFMEKPDKPSYQSYNVIGKLFREVKN 928
>gi|146762448|gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 136 bits (343), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 176/699 (25%), Positives = 292/699 (41%), Gaps = 122/699 (17%)
Query: 192 ARFESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQ 251
+R+ E ++ R Q +SL D G ++ I T F GP +N + L+
Sbjct: 335 SRWLFEEYKNFSRSRKYQGSPTISL--DEGLVYVRRVQI-TPSRVYFCGPEINVSNRVLR 391
Query: 252 RELGD-DNILLVKF-DEELGGHRSSN-----NWNDSYSKYNEIAREGILVGLRCYHFFVF 304
+ D DN L + F DEEL S+N Y + R GI++G + + F F
Sbjct: 392 QFHNDIDNFLRISFVDEELEKIHSTNVQARGRRTGIYKRILSTLRNGIVIGNKRFEFLAF 451
Query: 305 KDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVA 364
S+S ++ E+SA++ + G T + R + + +VA
Sbjct: 452 ------------SSSQLR------ENSAWMFASRK----GLTAADIRSWMGNFSKIRNVA 489
Query: 365 NYMSRLSLILSK-TMKLEVDFSRIN-IERIEDEPCRDKDGNVVYKDGEALIHTDGTGFIS 422
Y +RL S T L V IN I IE + KDG + +DG G IS
Sbjct: 490 KYAARLGQSFSSSTETLSVSKDEINLIPDIE-----------IMKDGIKYVFSDGIGKIS 538
Query: 423 EDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNG 482
+ A K + CT P Q+R+
Sbjct: 539 AEFAKKVAAKCRLKGCT-------------------------------PSAFQIRI---- 563
Query: 483 TAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSN-QPRKTYLSRN 541
KG + ++ + +R SM K +++ L+V+ S QP +L+R
Sbjct: 564 GGFKGVVAIDPT-SSWKLSLRKSMEKYESEN--------TKLDVLAWSKYQP--CFLNRQ 612
Query: 542 LIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGI 601
LI LLS GVP+ F R +D + ++ A + + M+L G
Sbjct: 613 LITLLSTLGVPDRAFEKKQREVVDQLNALLTDPLEAQEALELMSPGENTNILKEMLLCGY 672
Query: 602 SLD-EPYLQHRLSILMKEEKKSLQA-GKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQ 659
D EP+L L + L+ ++ V + +MG +D T L +V + +
Sbjct: 673 KPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMGCLDETRTLNYGQVFVQFSGSR 732
Query: 660 -----VSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEI 714
+ KV+V +NP LH GD+ VL+A V +L V + FP G R +E
Sbjct: 733 SERRFIVQGKVIVAKNPCLHPGDVRVLRAVNVPDLHHMVD----CVVFPQKGTRPHPNEC 788
Query: 715 AGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNT 774
+G D DGD+YFV +PEL+ + + S + S K + ++EE+E E F T
Sbjct: 789 SGSDLDGDVYFVCWDPELIPYKQIDPMDYSPA---STTKLDHEVTIEEIE-EYF-----T 839
Query: 775 RFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIK 834
+ +++ + ++ A DR E AM L L ++ A+D PK +G+
Sbjct: 840 NYIVNDSLGIISNAHTAFADR---------EPDKAMSRPCLELAKLFSIAVDFPK-TGVP 889
Query: 835 VEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKS 873
E+P++L+V+++P +M + + S++S +V+G ++ VK+
Sbjct: 890 AEIPQELRVKEYPDFMEKPDKPSYQSHNVIGKLFREVKN 928
>gi|255546343|ref|XP_002514231.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
gi|223546687|gb|EEF48185.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
Length = 114
Score = 136 bits (342), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 61/69 (88%), Positives = 65/69 (94%)
Query: 664 KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDM 723
KVLVYRNPGLHFGDIHVLKATYVK LEDFVG +KYAIFFPC GP+SLADEIAGGDF+ DM
Sbjct: 31 KVLVYRNPGLHFGDIHVLKATYVKALEDFVGNAKYAIFFPCKGPQSLADEIAGGDFNNDM 90
Query: 724 YFVSRNPEL 732
YFVSRNPE+
Sbjct: 91 YFVSRNPEV 99
>gi|242080895|ref|XP_002445216.1| hypothetical protein SORBIDRAFT_07g006150 [Sorghum bicolor]
gi|241941566|gb|EES14711.1| hypothetical protein SORBIDRAFT_07g006150 [Sorghum bicolor]
Length = 1220
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 136/440 (30%), Positives = 205/440 (46%), Gaps = 82/440 (18%)
Query: 470 PPLLMQVRLFYNGTAVKGTLLLNKKLPPQT----IQIRPSMIKVKADRDLSDGQTFNSLE 525
PP Q+R Y G KG + + P Q + +RPSM K ++ T + +E
Sbjct: 653 PPSAYQIR--YAG--FKGVIAV---WPGQNDGIRLSLRPSMRKFES--------THSVIE 697
Query: 526 VVK-TSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNY 584
VV T QP +L+R +I LL GVPE F ++ L + + S++ A KV N
Sbjct: 698 VVSWTKFQP--AFLNRQIIILLMSLGVPEAIFWEMQEAMLKNLDRILSDREIAYKVVTN- 754
Query: 585 GGMDYDFTSARMILS-GIS-LDEPYLQHRL-SILMKEEKKSLQAGKLPVTESYYLMGTVD 641
T AR++LS G S EP+L+ L +I + K L+ K+ V + +LMG +D
Sbjct: 755 -SCPERGTIARLMLSAGFSPATEPHLKAMLLAIKSSQLKGLLKKTKIFVPKGRWLMGCLD 813
Query: 642 PTGILKSNEVCI----------ILKDGQ--VSWEK--------VLVYRNPGLHFGDIHVL 681
GIL+ + I +K G S K V+V +NP LH GD+ VL
Sbjct: 814 ELGILEQGQCFIQASSLSINNHFMKHGSRFSSANKNAVTIVGTVVVAKNPCLHPGDVRVL 873
Query: 682 KATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESER 741
+A V EL V + FP G R +E +G D DGD+YFV+ + L+ K S +
Sbjct: 874 EAVDVPELHHLVD----CLVFPKKGERPHPNEASGSDLDGDVYFVTWDKNLVPPGKRSWK 929
Query: 742 WM--STSKNLSANKR-----LIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMD 794
M S ++ +R LIDF L+ + SE SNA + AD
Sbjct: 930 AMDYSPAEAKQLQRRVLQHDLIDFFLKNMASENIGRI-------SNAHVVHADI------ 976
Query: 795 RFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDE 854
E AM E ++L + A+D PK +G V +P L+ K+P +M +D+
Sbjct: 977 ----------SEYGAMDEKCIQLAELAATAVDFPK-TGKIVRMPPSLRPTKYPDFMEKDD 1025
Query: 855 SVSFESTSVLGTIYNTVKSY 874
++S++S ++G +Y TV+ Y
Sbjct: 1026 AISYKSEKIIGKLYRTVRYY 1045
>gi|449533441|ref|XP_004173684.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like, partial
[Cucumis sativus]
Length = 149
Score = 128 bits (322), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/152 (46%), Positives = 98/152 (64%), Gaps = 3/152 (1%)
Query: 835 VEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCFDDGV 894
+EVP+ LK P +M R ++ S+ STS+LG I++T Y+ ++ E+ KLPCF++ +
Sbjct: 1 IEVPKHLKAGTLPHFMERGKN-SYVSTSILGQIFDTANMYQEEVPNI-EVQKLPCFEEEL 58
Query: 895 PEACMTKWKGYYDQYRWEMKEAIDKCTVEREEAAELVIEKYKQILYGAAEFEQSTRTLEE 954
PE KWK Y+ YR +M +A+ + AAE I+KYK+ILYGA E E S R+ EE
Sbjct: 59 PEYIFMKWKFLYELYRKDMVDAMQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSNEE 118
Query: 955 IYNEALAIYNITYDLAASRRQVSYCSFAWRVA 986
+Y EALAIY +TYD A S R V C FAW+VA
Sbjct: 119 VYQEALAIYQVTYDHAMS-RSVRNCGFAWKVA 149
>gi|367042188|ref|XP_003651474.1| hypothetical protein THITE_2048877 [Thielavia terrestris NRRL 8126]
gi|346998736|gb|AEO65138.1| hypothetical protein THITE_2048877 [Thielavia terrestris NRRL 8126]
Length = 1511
Score = 127 bits (318), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 181/702 (25%), Positives = 287/702 (40%), Gaps = 147/702 (20%)
Query: 230 ISTKGNCTFKGPYLNQTRTHLQR-ELGDDNILLVKFDEEL--GGHRSSNNWNDS--YSKY 284
I T F P + T ++R + D+ + V+F +EL G R+ D Y++
Sbjct: 509 IVTPTRIYFNTPTVETTNRIVRRYKQVQDHFIRVQFTDELLEGRIRACEVDRDDELYTRV 568
Query: 285 NEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSG 344
+ +GI +G + F F + E +F + E GY I +
Sbjct: 569 YRVMMQGIRMGRWHWKFLAFGNSQIRENGA--------FFFCQAE-------GYPDI-TC 612
Query: 345 KTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNV 404
T+ + F H+ TV+ +A +RL S T L S I +I D
Sbjct: 613 DTIRQWMGNFSHISTVAKLA---ARLGQCFSTTRLLRC-ISSPWIVKIPD---------- 658
Query: 405 VYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTE 464
V K G TDG G IS LA S V++
Sbjct: 659 VEKGG--FCFTDGVGKISMVLA-------------------------------SLVSQDW 685
Query: 465 SHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSL 524
Y PP Q R+ KG L+ + IRPS K A+ +N L
Sbjct: 686 KIY-PPPSAFQFRM----GGCKGVLVTWPDAKGMEVHIRPSQEKFSAE--------YNGL 732
Query: 525 EVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNY 584
E+++ S T L+R I +LS GVP+ F ++ + + ++K A+++ +Y
Sbjct: 733 EIIRCSQFSCAT-LNRQTILILSCLGVPDDVFTSMMDEQISNYDAAMTDKDKAVELLSSY 791
Query: 585 GGMDYDFTS---ARMILSG-ISLDEPYLQHRLSILMKEEKKSL-QAGKLPVTESYYLMGT 639
+D + TS ARM+L+G + EP+++ L + K L + +L V + +++G
Sbjct: 792 --VDENMTSTTIARMVLNGFMHTQEPFVRTLLQLWRSWSIKGLKEKARLIVDQGAFVLGC 849
Query: 640 VDPTGILKSN----------------EVCIILKDG------QVSWEKVLVYRNPGLHFGD 677
VD TG L+ + ++ + + D +V LV RNP LH GD
Sbjct: 850 VDETGSLRGHSKATEGRKKIAQHHLPQIFLQVPDPRDRGAYKVITGLCLVGRNPSLHPGD 909
Query: 678 IHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFK 737
I V++A + +L + + FP +G R + +GGD DGD +FV +P+L+
Sbjct: 910 IRVVEAVDLPQLRHL----RDVVVFPLSGDRDIPSMCSGGDLDGDDFFVIWDPKLI---- 961
Query: 738 ESERWMSTSKNLSANKRLIDFSLEELES--ELFKLFLNTRFCPSNAKSLAADCWQAVMDR 795
W N SA K L + +S F LF+ P A +
Sbjct: 962 -PPEWSHPPMNYSAPKSLTEPRASTAKSLATFFVLFMKNDRLPLIAHA------------ 1008
Query: 796 FLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDES 855
L E + A L+L ++ A+D K+G+ E + L K+P +M + +S
Sbjct: 1009 --HLATADYEVEGAKHRKCLQLAELHSTAVDY-VKTGVPAEWNKKLDPRKYPHFMEKPKS 1065
Query: 856 VSFESTSVLGTIYNTVKSYEAVDRSV---TEIWKLPCFDDGV 894
S+ STSVLG K Y+ VDR V ++ +KLP FDD +
Sbjct: 1066 KSYHSTSVLG------KLYDMVDRVVFDNSDNYKLP-FDDRI 1100
>gi|356519367|ref|XP_003528344.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Glycine max]
Length = 1135
Score = 123 bits (308), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 193/833 (23%), Positives = 337/833 (40%), Gaps = 152/833 (18%)
Query: 215 SLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGD-DNILLVKF-DEELGG-- 270
++ D G +++ + T F GP +N + L+ D DN L V F DE++
Sbjct: 348 AISLDDGLVYVHRVQV-TPSKIYFCGPEVNLSNRVLRNYPEDTDNFLRVSFVDEDMDKLH 406
Query: 271 -----HRSSNNWNDSYSKYNE----IAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPV 321
RSS+ D +K +E + GI +G + + F F S S +
Sbjct: 407 SADLVPRSSSTDVDRETKLHERVLSTLKNGIAIGDKKFEFLAF------------SPSQL 454
Query: 322 KCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLE 381
+ V M +S +G T + R + +VA Y +RL S + +
Sbjct: 455 RDNSVWMFASR----------TGLTASDIRKWMGEFHEIRNVAKYAARLGQSFSSSRE-T 503
Query: 382 VDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTND 441
V IE I D R + + TDG G IS +LA + +KC
Sbjct: 504 VSVGEHEIEIIPDIELRRGETKYCF--------TDGIGKISSELAQEV-----AKKCGCR 550
Query: 442 DSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQ 501
D+ P Q+R Y G KG + ++ +
Sbjct: 551 DNN-------------------------IPSAFQIR--YGG--YKGVVAIDPT-SSTKLS 580
Query: 502 IRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILR 561
+R SM K K++ L+V+ S + YL+R +I LLS GV + F R
Sbjct: 581 LRKSMFKYKSEN--------TKLDVLAWSKY-KPCYLNRQIITLLSTLGVKDRVFRKKQR 631
Query: 562 NALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKK 621
L+ + + + L + F G + +I EP+L L L + +
Sbjct: 632 EILNQLKMISTKPLMVLDLMFT--GEITNILREMLICGFHQTKEPFLSMMLQTLCASKLQ 689
Query: 622 SLQ-AGKLPVTESYYLMGTVDPTGILKSNEVCIIL----------------------KDG 658
LQ ++ V + L+G +D T LK EV + + K
Sbjct: 690 ELQLKTRILVKKGRALLGCLDETRTLKYGEVFVQIAHQRNKQIHAMPSLSSNRYGGNKSK 749
Query: 659 QVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGD 718
+ KV+V +NP LH GD+ +L+A V L V + FP G R +E +G D
Sbjct: 750 HIVKGKVVVAKNPCLHPGDVRILRAVDVPSLHHMVD----CVVFPQKGRRPHPNECSGSD 805
Query: 719 FDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCP 778
DGD+YFVS +P+L+ +E+ + S+ ++ + D +L+E++ E F
Sbjct: 806 LDGDIYFVSWDPDLIPPHQENPMDHAPSQVMNVDH---DVTLQEVQ-EYF---------- 851
Query: 779 SNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVP 838
A + D V D+ E+ AM L ++ A+D KSG+ E+P
Sbjct: 852 --AHYIVEDRLGIVASAHTVFADKDPEK--AMSPACTELAKLHSIAVDF-AKSGVPAEIP 906
Query: 839 EDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKS---YEAVDRSVTEIWKLPCFD---- 891
+ L+VE++P +M + + S++S S++G +Y V++ ++ ++++ T +D
Sbjct: 907 QHLRVEEYPDFMEKPDKPSYQSNSIIGKLYREVRNVAQHKNLNKTFTRRVARQSYDPDME 966
Query: 892 -DGVPEACMTKWKGYYDQYRWEMKEAIDKCTVEREEAAELV---IEKYKQILYGAAEFEQ 947
DG + T + Y + Y +++ +D +E E AE++ I K + + E
Sbjct: 967 IDGFEKYTATACE-YKNMYDFKLGNLMDYYGIETE--AEIISGNILKMSKSFNERKDLEG 1023
Query: 948 STRTLEEIYNEALAIYNITYDLAASRRQVSYC-SFAWRVAGSALRKFYARRQG 999
+ + E + +N+ + + S+ + +Y + AW + R + + QG
Sbjct: 1024 INHAVMSLRKETRSWFNVMVNKSNSQGRDAYAIASAWYLVTYHPRYWGSYNQG 1076
>gi|75330108|sp|Q8LHH9.1|SHL2_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase SHL2; AltName:
Full=Protein SHOOTLESS 2
gi|21328146|dbj|BAC00725.1| putative RNA-dependent RNA polymerase [Oryza sativa Japonica Group]
gi|157279691|dbj|BAF80151.1| SHOOTLESS2 [Oryza sativa Japonica Group]
Length = 1218
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 146/560 (26%), Positives = 242/560 (43%), Gaps = 119/560 (21%)
Query: 345 KTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNV 404
KT EA +M T +VA + +R+ S T ++ + + E + D +V
Sbjct: 552 KTTVEAIRKWMGRFTSKNVAKHAARMGQCFSST------YATVTMRPDEVDESFD---DV 602
Query: 405 VYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTE 464
V+ + I +DG G I+ DLAL+ +R +L N
Sbjct: 603 VHNE---YIFSDGIGKITPDLALEV------------------AERLQLTDN-------- 633
Query: 465 SHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQT-IQIRPSMIKVKADRDLSDGQTFNS 523
PP Q+R KG + + + T + +RPSM K +++ +
Sbjct: 634 -----PPSAYQIRF----AGFKGVIAVWQGHGDGTRLFLRPSMRKFESNHLV-------- 676
Query: 524 LEVVK-TSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSF 582
LEVV T QP +L+R +I LLS VP+ F + L + + S++ A +V
Sbjct: 677 LEVVSWTKFQP--GFLNRQIIILLSSLNVPDSIFWQMQETMLSNLNNILSDRDVAFEV-L 733
Query: 583 NYGGMDYDFTSARMILSGI-SLDEPYLQHRL-SILMKEEKKSLQAGKLPVTESYYLMGTV 640
D T+A M+ +G EP+L+ L +I + + L+ ++ V + +LMG +
Sbjct: 734 TTSCADDGNTAALMLSAGFEPRTEPHLKAMLLAIRSAQLQDLLEKARIFVPKGRWLMGCL 793
Query: 641 DPTGILKSNEVCIIL---------------------KDGQVSWEKVLVYRNPGLHFGDIH 679
D G+L+ + C I K+ +V V++ +NP LH GD+
Sbjct: 794 DELGVLEQGQ-CFIRATVPSLNSYFVKHGSRFSSTDKNTEVILGTVVIAKNPCLHPGDVR 852
Query: 680 VLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKES 739
+L+A V EL V + FP G R A+E +G D DGD+YFV+ + +L+ K+S
Sbjct: 853 ILEAVDVPELHHLVD----CLVFPQKGERPHANEASGSDLDGDLYFVTWDEKLIPPGKKS 908
Query: 740 ERWMSTS----KNLS---ANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAV 792
M S K L + +IDF L+ + SE R C NA + AD
Sbjct: 909 WNPMDYSPPEAKQLPRQVSQHDIIDFFLKNMISENLG-----RIC--NAHVVHADL---- 957
Query: 793 MDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRR 852
E AM E + L + A+D PK + + +P LK + +P +M +
Sbjct: 958 ------------SEYGAMDEKCIHLAELAATAVDFPKTGKLAI-MPPHLKPKVYPDFMGK 1004
Query: 853 DESVSFESTSVLGTIYNTVK 872
++ S++S +LG +Y +++
Sbjct: 1005 EDGQSYKSEKILGRLYRSIQ 1024
>gi|356499585|ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Glycine max]
Length = 1125
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 173/709 (24%), Positives = 288/709 (40%), Gaps = 137/709 (19%)
Query: 212 RRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLN---QTRTHLQRELGDDNILLVKF-DEE 267
R ++ D+G ++ I T F GP +N + H + + DN L V F DEE
Sbjct: 357 RSPAISLDTGLVYVRRVQI-TPCKVYFCGPEMNVSNRVLRHFREHI--DNFLRVSFVDEE 413
Query: 268 LG-------GHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSP 320
L RS N + Y++ I + GI+VG + + F F S+S
Sbjct: 414 LDKLFSTDLSSRSQNKKTEIYTRILSILKNGIVVGDKKFEFLAF------------SSSQ 461
Query: 321 VKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLIL-SKTMK 379
++ E+S ++ + +G T R + + +VA Y +RL S T
Sbjct: 462 LR------ENSLWM---FAPTETGCTAAYIRKWMGNFSQIRNVAKYAARLGQSFGSSTET 512
Query: 380 LEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCT 439
L V R +E I D DGN + +DG G IS + A K +KC
Sbjct: 513 LSV--HRDEVEIIPDVKKLTYDGN-------EYVFSDGIGKISLEFAQKV-----AKKCG 558
Query: 440 NDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQT 499
D + P Q+R Y G KG + ++ K
Sbjct: 559 YDCT---------------------------PSAFQIR--YGG--YKGVVAVDPK-SCYK 586
Query: 500 IQIRPSMIKVKADRDLSDGQTFNSLEVVKTSN-QPRKTYLSRNLIALLSYGGVPEIFFLD 558
+ +R SM K +D L+V+ S QP YL+R LI+LLS G+ + F
Sbjct: 587 LSLRKSMRKYDSDN--------TKLDVLARSKFQP--CYLNRQLISLLSTLGIKDDVFEK 636
Query: 559 ILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLDE-PYLQHRLSILMK 617
R ++ + ++ A +V + M++ G +E P+L L
Sbjct: 637 KQRETVNQLNTILTDSLKAQEVLDLMSAGEITNVLKEMLICGYKPNEEPFLSMMLQTFRA 696
Query: 618 EEKKSLQ-AGKLPVTESYYLMGTVDPTGILKSNEVCII--------LKDGQVSWE----- 663
+ L+ ++ + + +MG +D T L+ +V + L D S++
Sbjct: 697 SKLLELRLKSRIFIPKGRAMMGCLDETRTLEYGQVFVQFSNNRLQNLSDDFFSYDLPKNY 756
Query: 664 ----KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDF 719
KV+V +NP LH GD+ VL+A V +L V + FP GPR +E +G D
Sbjct: 757 MVKGKVVVAKNPCLHPGDVRVLQAVDVPDLYHMVD----CVVFPQKGPRPHPNECSGSDL 812
Query: 720 DGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRF-CP 778
DGD+YFV + EL+ + + + D +EE+E +N
Sbjct: 813 DGDIYFVCWDHELIPSRPIDPMDYTAPATVELDH---DVMIEEVEEYFANYIVNDSLGII 869
Query: 779 SNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVP 838
+NA ++ AD E AM + ++L ++ A+D PK +G+ +P
Sbjct: 870 ANAHTVFAD----------------KEHLKAMSDQCVKLARLFSTAVDFPK-TGVPAVIP 912
Query: 839 EDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKL 887
+L V+++P +M + + +++S +V+G ++ VK S+T KL
Sbjct: 913 PELHVKEYPDFMEKPDKPTYKSHNVIGKLFREVKEISTSAGSITSFTKL 961
>gi|224099571|ref|XP_002311536.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222851356|gb|EEE88903.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1133
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 180/698 (25%), Positives = 277/698 (39%), Gaps = 139/698 (19%)
Query: 212 RRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGD-DNILLVKF-DEEL- 268
R L D+G ++Y I T F GP +N + L++ D DN L V F DEEL
Sbjct: 354 RSPVLSLDAGLVYVYKVQI-TPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELE 412
Query: 269 -------GGHRSSNNWNDSYSKYNEIA---REGILVGLRCYHFFVFKDGGKEEKKKDPST 318
SS N + YN I + GI++G + + F F E
Sbjct: 413 KIHSTDVSPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENS----- 467
Query: 319 SPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLIL-SKT 377
C+ M +S G T + R + +VA Y +RL S T
Sbjct: 468 ----CW---MFASRL----------GLTAADIRAWMGSFHKIRNVARYAARLGQSFGSST 510
Query: 378 MKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEK 437
L V S IE I D V + G + +DG G IS + A K K
Sbjct: 511 ETLSV--SSHEIEIIPDIE--------VSRGGTRYLFSDGIGKISAEFARKVAI-----K 555
Query: 438 CTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPP 497
C G P Q+R Y G KG + ++
Sbjct: 556 CGCK--------------------------GFTPSAFQIR--YAG--YKGVVAVDPT-SS 584
Query: 498 QTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSN-QPRKTYLSRNLIALLSYGGVPEIFF 556
+ + +R SM K +++ L+V+ S QP +L+R LI LLS GVP+ F
Sbjct: 585 KKLSLRRSMFKYESEN--------TKLDVLAHSKYQP--CFLNRQLITLLSTLGVPDHHF 634
Query: 557 LDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLD-EPYLQHRLSIL 615
R A+D + ++ A + + M+L G D EP+L L
Sbjct: 635 ERKQREAVDQLDAMLTDPLRAQEALELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTF 694
Query: 616 MKEEKKSLQA-GKLPVTESYYLMGTVDPTGILKSNEVCIILKD----------------- 657
+ L+ ++ + +MG +D T L+ +V +
Sbjct: 695 RASKLLELRTKTRIFIPNGRSMMGCLDETRTLEHGQVFVKFSGSRFRNLYDSSDMFSERG 754
Query: 658 -GQVSWEK--VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEI 714
GQ K V+V +NP LH GD+ +LKA V L V + FP GPR +E
Sbjct: 755 RGQCYLIKGSVVVAKNPCLHPGDLRILKAVDVPALHHMVD----CVVFPQKGPRPHPNEC 810
Query: 715 AGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNT 774
+G D DGD+YFV +PEL+ + S + L + D ++EE+E E F T
Sbjct: 811 SGSDLDGDIYFVCWDPELIPSQQISPMDYTPEPPLQLDH---DVTIEEVE-EYF-----T 861
Query: 775 RFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIK 834
+ +++ + A+ A D+ E AM E + L + A+D P K+G+
Sbjct: 862 NYIVNDSLGVIANAHTAHADK---------ESLKAMSEPCVELARKFSIAVDFP-KTGVP 911
Query: 835 VEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVK 872
E+P +L+ ++P +M + + S+ES +V+G ++ VK
Sbjct: 912 AEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVK 949
>gi|451997457|gb|EMD89922.1| hypothetical protein COCHEDRAFT_1138647 [Cochliobolus
heterostrophus C5]
Length = 1228
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 163/657 (24%), Positives = 258/657 (39%), Gaps = 138/657 (21%)
Query: 253 ELGDDNILLVKFDEELGGHRSSNNWNDS----YSKYNEIAREGILVGLRCYHFFVFKDGG 308
E D + V+F +E + N N + + + GI+V R Y F F +
Sbjct: 420 EADADRFIRVRFTDEKNEGQLRNQPNGRAEAVFDRVFRAMKNGIVVAGRYYEFLAFGNSQ 479
Query: 309 KEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMS 368
E YF SS S + + F H++TVS A +
Sbjct: 480 FRENG---------AYFYAPTSSK----------SANDIRISLGEFDHIKTVSKFA---A 517
Query: 369 RLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALK 428
RL S T + V +E DK N I TDG G +S LA
Sbjct: 518 RLGQCFSTTRAMGVT--------VELTTTPDKKHN-------NFIFTDGVGKLSPFLA-- 560
Query: 429 CPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGT 488
+ + L F+D PP L Q RL KG
Sbjct: 561 ----------------QMAAQELGLANAFTD----------PPSLFQFRL----GGSKGV 590
Query: 489 LLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSY 548
L L+ KL ++IRPS K +A + LE++++S+ Y +R +I +LSY
Sbjct: 591 LALDPKLKRNQVKIRPSQYKFRA--------PYTGLEIIRSSSF-ATPYFNRQIILVLSY 641
Query: 549 GGVPEIFFLDILRNALDDARGVFSNKRNAL-KVSFNYGGMDYDFTSARMILSG-ISLDEP 606
GV + FL + ++D +++ AL K+ N T A M+L G + EP
Sbjct: 642 LGVQDAVFLRKQEDMMNDYSRAMADETTALQKLRKNIDINQTTLTMAAMVLDGFMGSREP 701
Query: 607 YLQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKSN---------------- 649
++ L++ K+L + ++ + +L+G VD T LK +
Sbjct: 702 FIMSLLALWRACTIKNLKEKARIAIDNGAFLLGCVDETKKLKGHFNDPQSRRDATRDEKL 761
Query: 650 ----EVCIILKDGQVSWEKV------LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYA 699
E+ + + D + +V RNP LH GD+ V++A V+EL K
Sbjct: 762 ATLPEIFLQVSDPNSKGHYIIIEGICIVARNPSLHPGDVRVVRAVNVEELHHL----KNV 817
Query: 700 IFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRL-IDF 758
+ FP G R LA+ +GGD DGD Y V + +LL ER + + K + ID
Sbjct: 818 VVFPQTGDRDLANMCSGGDLDGDDYMVLWDTDLL-----PERINEPPMDFTPEKAVEIDG 872
Query: 759 SLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLI 818
+ L ++ + F+N + D + L D E L L
Sbjct: 873 PISAL--DMARFFVNY---------IKNDALGPIAHAHLAQAD--FNENGVGDPICLELA 919
Query: 819 NIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRR---DESVSFESTSVLGTIYNTVK 872
++ A+D P KSGI E+ +L+ +K+P +M + + ++S +LG +Y+ VK
Sbjct: 920 ELHSRAVDFP-KSGIPAEMKRELRPKKWPHFMEKKYLSQHQIYKSKKILGLLYDEVK 975
>gi|242066062|ref|XP_002454320.1| hypothetical protein SORBIDRAFT_04g028630 [Sorghum bicolor]
gi|241934151|gb|EES07296.1| hypothetical protein SORBIDRAFT_04g028630 [Sorghum bicolor]
Length = 1114
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 166/705 (23%), Positives = 287/705 (40%), Gaps = 134/705 (19%)
Query: 204 RKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGD-DNILLV 262
R++ R ++ D G +++ + T F GP +N + ++ D DN L +
Sbjct: 353 RRSRHASQRSSNISLDDGLVYVHRVQV-TPAKVYFYGPEINVSNRVVRNFSADIDNFLRI 411
Query: 263 KF-DEELGGHRS------SNNWNDS-----YSKYNEIAREGILVGLRCYHFFVFKDGGKE 310
F DE+ RS S + ND+ Y++ + GI +G + + F F
Sbjct: 412 SFVDEDCEKLRSLDLSPRSTSGNDARRTALYNRVLSVLSNGINIGDKHFEFLAF------ 465
Query: 311 EKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRL 370
S+S ++ ++SA++ Q G T + R R + +VA Y +RL
Sbjct: 466 ------SSSQLR------DNSAWMFASRQ----GLTASDIRKWMGDFRDIRNVAKYAARL 509
Query: 371 SLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFIS----EDLA 426
S + + + + +E+I D K+G I +DG G IS +++A
Sbjct: 510 GQSFSSSTETLI-VRKHEVEQIPD-----------IKNGTNYIFSDGVGKISANFAKEVA 557
Query: 427 LKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVK 486
+KC + P + Q+R Y G K
Sbjct: 558 MKCKLRRFA-----------------------------------PSVFQIR--YGG--YK 578
Query: 487 GTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALL 546
G + ++ + + + +R SM+K + S+ T + L K QP +L+R LI LL
Sbjct: 579 GVVAVDPR-SNRKLSLRRSMLKFQ-----SENITLDVLAYSKY--QP--CFLNRQLITLL 628
Query: 547 SYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLD-E 605
S GV + F + A+ + + + A + + ++ G D E
Sbjct: 629 STLGVGDNVFELKQKEAIKQLNRMVTEPQAAREAVELMPMGEVTNVVKELLSCGYQPDHE 688
Query: 606 PYLQHRLSILMKEEKKSLQA-GKLPVTESYYLMGTVDPTGILKSNEV------CIILKDG 658
PYL L + L+ ++ +T+ +MG +D T LK +V C
Sbjct: 689 PYLSMLLQTFRASKLLELKTKSRIFITQGRAMMGCLDETRTLKYGQVFIQASYCADDHHK 748
Query: 659 QVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGD 718
V KV+V +NP LH GDI VL+A V L + FP GPR +E +G D
Sbjct: 749 IVVTGKVVVAKNPCLHPGDIRVLQAVDVPSLHHMFD----CVVFPQQGPRPHPNECSGSD 804
Query: 719 FDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRF-C 777
DGD+YFVS +P+L+ E + + + + D ++EE++ +N
Sbjct: 805 LDGDIYFVSWDPDLIPSHMEDPMDYTPAPAETLDH---DVTIEEIQEYFTNYIVNESLGI 861
Query: 778 PSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEV 837
+NA + AD E+ A L L ++ A+D P K+G+ +
Sbjct: 862 IANAHVVYAD----------------KEDLKAKSRPCLELAKLFSIAVDFP-KTGVPALI 904
Query: 838 PEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSVT 882
P +L V+++P +M + + ++ES V+G +Y +K + R T
Sbjct: 905 PPELHVKEYPDFMEKLDKATYESKGVIGKLYREIKKHTPHIRHFT 949
>gi|242057591|ref|XP_002457941.1| hypothetical protein SORBIDRAFT_03g022880 [Sorghum bicolor]
gi|241929916|gb|EES03061.1| hypothetical protein SORBIDRAFT_03g022880 [Sorghum bicolor]
Length = 1207
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 109/404 (26%), Positives = 189/404 (46%), Gaps = 59/404 (14%)
Query: 500 IQIRPSMIKVKADRDLSDGQTFNSLEVVK-TSNQPRKTYLSRNLIALLSYGGVPEIFFLD 558
+ +RPSM K +++ N LEVV T QP +L+R +I LLS VP+ F
Sbjct: 650 LSLRPSMHKFESNH--------NVLEVVSWTKFQP--GFLNRQIITLLSSLNVPDAIFSQ 699
Query: 559 ILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLD-EPYLQHRL-SILM 616
+ L + + S+ A + + T+A M+ +GIS EP+L+ L +I
Sbjct: 700 MQEAMLSNLNNILSDTDVAFDI-VTTSCAEQGNTAALMLSAGISPGTEPHLKAMLLAIRS 758
Query: 617 KEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEV-----------CIIL---------K 656
+ L+ ++ V + +LMG +D GIL+ + C++ K
Sbjct: 759 SQLLGLLEKTRIFVPKGRWLMGCLDELGILEQGQCFIRASSPSLNNCLVKHGPRFSSANK 818
Query: 657 DGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAG 716
+ + +++ +NP LH GD+ +L+A V EL V + FP G R A+E +G
Sbjct: 819 NAETIVGTIVMAKNPCLHPGDVRILEAVDVPELHHLVD----CLVFPKKGERPHANEASG 874
Query: 717 GDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLI-DFSLEELESELFKLFLNTR 775
D DGD+YFV+ + L+ K+S W + + K+L S ++ K +N +
Sbjct: 875 SDLDGDLYFVTWDENLIPPGKKS--WNPMDYSPTEAKQLPRAVSPHDIVDFFLKNMVNEK 932
Query: 776 FCP-SNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIK 834
P SNA + AD E AM E ++L + A+D P K+G
Sbjct: 933 LGPISNAHVVHAD----------------MSEYGAMDEKCIQLAELAATAVDFP-KTGKI 975
Query: 835 VEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVD 878
V +P L+ + +P +M +++++S++S +LG +Y +++ + D
Sbjct: 976 VSMPPSLRPKLYPDFMGKEDAISYKSEKILGRLYRSIQEASSGD 1019
>gi|407918335|gb|EKG11606.1| RNA-dependent RNA polymerase eukaryotic-type [Macrophomina phaseolina
MS6]
Length = 1511
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 172/687 (25%), Positives = 270/687 (39%), Gaps = 136/687 (19%)
Query: 227 HCHISTKGNCT-----FKGPYLNQTRTHLQRELG-DDNILLVKFDEE--LGGHRSSNNWN 278
HC S N T F P + + ++ L D L VKF EE G RSS +
Sbjct: 427 HCVYSRSANITPSTITFASPTMEISNRIIREYLRFSDRFLRVKFTEEKPRGKIRSSRDDK 486
Query: 279 DS--YSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDM 336
D+ +++ R GI +G R Y F F + E YF D
Sbjct: 487 DTELFTRVWRTLRNGIAIGDRHYEFLAFGNSQFREHG---------AYFFAPIEDDLCDE 537
Query: 337 GYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEP 396
+ T + R + + VA Y SR+ S T E + ++ ED
Sbjct: 538 ------NNITPSDIRMLMGDFDEIQEVARYASRMGQCFSTTR--EATSVKAHVSGHED-- 587
Query: 397 CRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEAN 456
+ ++G I TDG G IS LA+K +
Sbjct: 588 --------IMRNG--YIFTDGVGKISAALAVK------------------------IAQE 613
Query: 457 FSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLS 516
F E +PP + Q RL KG L ++K+L I IR S K A S
Sbjct: 614 FGHPTAVE----DPPSVFQFRL----GGCKGVLAVSKELGADEIHIRRSQDKFPAP---S 662
Query: 517 DGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRN 576
+G LE++K S T L+R LI +L GVP F+ L++ L D + +++
Sbjct: 663 EG-----LEIIKWSQFATAT-LNRQLIIILDARGVPNGVFMKKLQDQLSDLKKAMTSEVV 716
Query: 577 ALKVSFNY-GGMDYDFTSARMILSG-ISLDEPYLQHRLSILMKEEKKSL-QAGKLPVTES 633
AL++ + T A M+L G + + EP+L L + K L + +L V E
Sbjct: 717 ALRLLQRFVDSNQVSLTLAGMVLDGFMGIKEPFLMSVLHLWRTWSIKYLKEKARLFVGEG 776
Query: 634 YYLMGTVDPTGILKSN--------------------EVCIILKDG--QVSWEKVLVYRNP 671
+L+G +D T L + +V I G ++ +V RNP
Sbjct: 777 AFLLGCLDETASLHGHFYSEQNWKSLQTNLLPQIFVQVSDINHPGRYKIIEGVCIVARNP 836
Query: 672 GLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPE 731
LH GD+ V++A +L K + FP G R + + +GGD DGD Y V + E
Sbjct: 837 SLHPGDVRVVQAVNQPKLHHL----KNVVVFPQTGDRDIPNMCSGGDLDGDDYMVVWDKE 892
Query: 732 LLKHFKESERWMSTSKNLSANKRLIDFSLEELES-ELFKLFLNTRFCPSNAKSLAADCWQ 790
L+ N + +DF+ + ++ E + T+F K+ D
Sbjct: 893 LIPQ---------------KNYKPMDFTPPQKQTVEKVTMEHITKFFVEYIKN---DSLG 934
Query: 791 AVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYM 850
+ + L D E++ M + L L I+ A+D P KSG+ + + L ++P +M
Sbjct: 935 VIANAHLAAAD--FEDEGVMSKRCLELARIHSTAVDYP-KSGVAAIMDKRLAPRRYPHFM 991
Query: 851 RR-----DESVSFESTSVLGTIYNTVK 872
+ + +ES +LG +++ VK
Sbjct: 992 QNNFRNLENGRCYESKKILGQLFDAVK 1018
>gi|206598331|gb|ACI16098.1| RNA-directed RNA polymerase 6a [Hordeum vulgare]
Length = 1047
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 112/407 (27%), Positives = 192/407 (47%), Gaps = 65/407 (15%)
Query: 500 IQIRPSMIKVKADRDLSDGQTFNSLEVVK-TSNQPRKTYLSRNLIALLSYGGVPEIFFLD 558
+ +RPSM K ++ + LEVV T QP +L+R +I LLS VP+ F
Sbjct: 484 LSLRPSMHKFESPHTV--------LEVVSWTKFQP--GFLNRQIITLLSSLNVPDAIFSQ 533
Query: 559 ILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGI-SLDEPYLQHRL-SILM 616
+ ++ L + + ++ A V D T+A M+ +GI EP+L+ L +I
Sbjct: 534 MQKDMLSNLNNILTDTDVAFDV-VTTSCADEGNTAALMLSAGILPGTEPHLKALLLAIRS 592
Query: 617 KEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCI----------ILKDG-------- 658
+ L+ ++ V + +LMG +D GIL+ + I ++K G
Sbjct: 593 TQLLGLLEKSRIFVPKGRWLMGCLDELGILEQGQCFIRASSPVLNNSLVKHGPRFSSANN 652
Query: 659 --QVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAG 716
+ V++ +NP LH GD+ +L+A V L V + FP NG R A+E +G
Sbjct: 653 NAETIVGTVVMAKNPCLHPGDVRILEAIDVPALHHLVD----CLVFPKNGERPHANEASG 708
Query: 717 GDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFL---- 772
D DGD+YFV+ + +L+ K+S W + + K+L + +S++ FL
Sbjct: 709 SDLDGDLYFVTWDEKLIPPGKKS--WNPMDYSPAEAKQL---PRQVTQSDIVDFFLKNMV 763
Query: 773 NTRFCP-SNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKS 831
N + P SNA + AD E AM E ++L + A+D P K+
Sbjct: 764 NEKLGPISNAHVVHAD----------------MSEYGAMDEKCIQLAELAAFAVDFP-KT 806
Query: 832 GIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVD 878
G V +P L+ + +P +M +D+++S++S +LG +Y +++ + D
Sbjct: 807 GKIVSMPPALRPKLYPDFMGKDDAISYKSEKILGRLYRSIQEASSSD 853
>gi|224133496|ref|XP_002321582.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222868578|gb|EEF05709.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1110
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 122/434 (28%), Positives = 192/434 (44%), Gaps = 62/434 (14%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P Q+R Y G KG + +++ + + +R SM+K ++ + L V K S
Sbjct: 565 PSAFQIR--YGG--YKGVVAVDRN-SFRKLSLRSSMLKFDSENRM--------LNVTKWS 611
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYD 590
+ YL+R +I+LLS GV + F + + L R + +NK +AL V N D
Sbjct: 612 -ESMPCYLNREIISLLSTLGVADEIFQALQQKQLYRLRKMLTNKESALDVLENLAWADSK 670
Query: 591 FTSARMILSGISLD-EPYLQHRLSILMKEEKKSLQA-GKLPVTESYYLMGTVDPTGILKS 648
+M+L G + EPYL L + L++ ++ V + L+G +D +GIL
Sbjct: 671 NILVQMLLQGYEPNVEPYLSMMLQAYHENSLMELRSRCRIFVPKGRILIGCLDESGILDY 730
Query: 649 NEVCIILKDGQVSWE-------------------KVLVYRNPGLHFGDIHVLKATYVKEL 689
+V + + + + +V V +NP LH GDI VL+A Y EL
Sbjct: 731 GQVYVRITMTKAELQCCDQSFFRKVDESTSTIIGEVAVTKNPCLHPGDIRVLEAVYDVEL 790
Query: 690 EDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNL 749
E+ I FP NG R +E +GGD DGD +F+S + LL E + +
Sbjct: 791 EEKGLVD--CIIFPQNGGRPHPNECSGGDLDGDQFFISWDEGLLPCHTE-----APMDYV 843
Query: 750 SANKRLID--FSLEELESELFKLFLN-TRFCPSNAKSLAADCWQAVMDRFLTLGDESAEE 806
+R++D +LEE++ +N T S A + ADC E
Sbjct: 844 GGRQRIMDHNVTLEEIQRFFVDYMINDTLGAISTAHLVHADC----------------EP 887
Query: 807 KAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGT 866
A E L+L ++ A+D K+G E+P LK +FP +M R E + S VLG
Sbjct: 888 DKARSEKCLQLATLHSMAVDFA-KTGAPAEMPLYLKPREFPDFMERAEKQMYISDGVLGK 946
Query: 867 IYNTVKSYEAVDRS 880
+Y + +RS
Sbjct: 947 LYRDIHDSTRQERS 960
>gi|414588065|tpg|DAA38636.1| TPA: hypothetical protein ZEAMMB73_143695 [Zea mays]
Length = 214
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 126/229 (55%), Gaps = 25/229 (10%)
Query: 793 MDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRR 852
MDR LT G + +EK ++ ENM++L+++YY ALD G KV+V L+V+ +P +M +
Sbjct: 1 MDRLLTEGVDQ-DEKKSIVENMIKLVDLYYAALD-----GHKVDVDRHLRVKAYPHFMEK 54
Query: 853 DESVSFESTSVLGTIYNTVKSY--EAVDRSVTEIWKLPCFDD--GVPEACMTKWKGYYDQ 908
S+ S+S+LG IY+ + + D + +I L CF + PE C + W+ Y +
Sbjct: 55 KGFESYHSSSILGRIYDETEEIIAQQCDEQI-QITTLACFSEVESTPE-CTSLWEHRYQE 112
Query: 909 YRWEMKEAIDKCTVEREEAAELVIEKYKQILYGAAEFEQSTRTLEEIYNEALAIYNITYD 968
Y + + D E+ + + + + YK +++R L +++ EA AIY I Y+
Sbjct: 113 YLTKSRGLFDLGKEEKNDEFQKLYQHYKH---------ETSRDLSDVFMEACAIYRIVYE 163
Query: 969 LAASRRQVSYCSFAWRVAGSALRKF----YARRQGDRSMLCSASVLREI 1013
A R VS C F W VAG+AL YA ++G+++ LC SV+R++
Sbjct: 164 RAWCTRSVSRCRFVWNVAGAALCHLHATKYAAQRGEKTALCPLSVIRQL 212
>gi|125548642|gb|EAY94464.1| hypothetical protein OsI_16234 [Oryza sativa Indica Group]
Length = 1136
Score = 115 bits (289), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 139/552 (25%), Positives = 239/552 (43%), Gaps = 113/552 (20%)
Query: 351 RYM--FMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKD 408
R+M F ++R+VS A M +L S EV R ++E I D + D
Sbjct: 495 RWMGHFENIRSVSKCAARMGQL--FSSSRQTFEV--LRWDVEVIPDIE--------ITTD 542
Query: 409 GEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYG 468
G I +DG G IS A + +V +D L + F
Sbjct: 543 GSKYIFSDGIGKISLRFAKRVAHHV-------------GLDPTNLPSAF----------- 578
Query: 469 EPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVK 528
Q+R Y G KG + ++ + + +RPSM K + S+ + N +
Sbjct: 579 ------QIR--YGG--YKGVIAIDP-MSSIDLSLRPSMKKFE-----SESRMLN----IT 618
Query: 529 TSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMD 588
+ ++ + Y++R +I+LLS G+ + F+ + ++ + + + +NK AL V GG +
Sbjct: 619 SWSKSQPCYVNREIISLLSTLGIRDEIFVAMQQDEMRETEEMLTNKEVALSVLGKLGGSE 678
Query: 589 YDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAG-----KLPVTESYYLMGTVDPT 643
T+ +M+L G EP + LS+++K +++ K+ V + L+G +D T
Sbjct: 679 TK-TAVKMLLQGY---EPSSEPYLSMILKAHQENRLTDIRTRCKIHVPKGRVLIGCLDET 734
Query: 644 GILKSNEVCIIL-------KDGQVSW------------EKVLVYRNPGLHFGDIHVLKAT 684
G+L+ +V I + KD S+ KV + +NP LH GDI VL+A
Sbjct: 735 GVLEYGQVYIRITKNSKEQKDSNQSYFYNDDGKTATVVGKVAITKNPCLHPGDIRVLEAI 794
Query: 685 YVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMS 744
Y +L V + FP G R +E +GGD DGD+YF++ + +L+ E+ +
Sbjct: 795 YDPDLVGMVD----CLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLI-----PEKVDT 845
Query: 745 TSKNLSANKRLID--FSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDE 802
+ R++D +LEE++ +N D A+ L D
Sbjct: 846 PMDYTATRPRIMDHVVTLEEIQKHFVDYMIN-------------DSLGAISTAHLIHADR 892
Query: 803 SAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTS 862
S + A L+L ++ A+D K+G E+P L+ ++P +M R E + S
Sbjct: 893 SPLK--ARSPECLQLATLHSMAVDF-AKTGAPAEMPRTLRPREYPDFMERWEKPMYISNG 949
Query: 863 VLGTIYNTVKSY 874
VLG +Y + +
Sbjct: 950 VLGKLYRSAMGH 961
>gi|295667341|ref|XP_002794220.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226286326|gb|EEH41892.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1273
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 148/627 (23%), Positives = 256/627 (40%), Gaps = 138/627 (22%)
Query: 278 NDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMG 337
N+ Y++ + GI +G RCY F F + E YF F +
Sbjct: 524 NEVYTRVTLTMKNGITIGDRCYEFLAFSNAQLREHA---------AYF-------FASLP 567
Query: 338 YQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPC 397
+ L+ + F +R +VA + +RL S T L + + I I+D
Sbjct: 568 H---LTAANIRAQLGKFNQIR---NVAKHAARLGQCFSSTRAL--NGCPVQIVEIDD--- 616
Query: 398 RDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANF 457
+ ++G +DG G IS LA + +++ F
Sbjct: 617 -------IERNGYTF--SDGVGLISTFLA------------------------QMIQSEF 643
Query: 458 SDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSD 517
+ E+ GEPP + Q RL KG L ++ K + + IR S K A
Sbjct: 644 A----IETLSGEPPSVFQFRL----GGCKGILTVSSKAHRREVHIRKSQYKFAAPH---- 691
Query: 518 GQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNA 577
N LE+++ S+ + L+R LI +LS G+P+ F+ L+ L++ +++ A
Sbjct: 692 ----NGLEIIRHSSFCFAS-LNRQLIIVLSSLGIPDEIFVKKLQVMLENLELAMTSQEQA 746
Query: 578 LKVSFNYGGMDYDFTSARMILSGISLD------EPYLQHRLSILMKEEKKSLQA-GKLPV 630
+ + Y D ++L+ + LD +P++ L + + K L+A K+ +
Sbjct: 747 VNLLQTY----VDPNQMTLVLADMVLDGFQQSQDPFVTSLLELWRVWQIKYLKAKAKIAI 802
Query: 631 TESYYLMGTVDPTGILKS--------------------NEVCI-ILKDGQVSWEKV---- 665
+ +L+G +D TG LK E+ + I + + ++E +
Sbjct: 803 DKGAFLLGCLDETGSLKGYFRSKRPGGGATYEQKLDCLPEIFVQISRHSEDTYEVIEGLC 862
Query: 666 LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYF 725
++ RNP LH GDI V+KA + +L K + P G R +A +GGD DGD Y
Sbjct: 863 ILARNPSLHPGDIRVVKAVDIPDLHHL----KDVVVLPQTGDRDIASMCSGGDLDGDDYV 918
Query: 726 VSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLA 785
V + +LL + W + SA K + + ++ K F++ +
Sbjct: 919 VIWDQDLL-----PKDWFEEPMDYSAPKSEV-LDRDVTVDDIIKFFVSY---------MQ 963
Query: 786 ADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEK 845
D + L + D S + E LRL ++ A+D KSG+ V + DLK +K
Sbjct: 964 NDRLPQIAPAHLAIADYS--DDGVQDEKCLRLATLHSAAVDY-NKSGMPVHMNRDLKPKK 1020
Query: 846 FPCYMRR---DESVSFESTSVLGTIYN 869
+P +M R + + S +LG +Y+
Sbjct: 1021 WPHFMERKFAKKDSQYTSRKILGQLYD 1047
>gi|75327281|sp|Q7XM31.1|RDR2_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 2; Short=OsRDR2
gi|32492169|emb|CAE04828.1| OSJNBb0048E02.13 [Oryza sativa Japonica Group]
Length = 1136
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 178/731 (24%), Positives = 298/731 (40%), Gaps = 163/731 (22%)
Query: 351 RYM--FMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKD 408
R+M F ++R+VS A M +L S EV R ++E I D + D
Sbjct: 495 RWMGHFENIRSVSKCAARMGQL--FSSSRQTFEV--LRWDVEVIPDIE--------ITTD 542
Query: 409 GEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYG 468
G I +DG G IS A + +V +D L + F
Sbjct: 543 GSKYIFSDGIGKISLRFAKRVAHHV-------------GLDPTNLPSAF----------- 578
Query: 469 EPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVK 528
Q+R Y G KG + ++ + + +RPSM K + S+ + N +
Sbjct: 579 ------QIR--YGG--YKGVIAIDP-MSSIDLSLRPSMKKFE-----SESRMLN----IT 618
Query: 529 TSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMD 588
+ ++ + Y++R +I+LLS G+ + F+ + ++ + + + +NK AL V GG +
Sbjct: 619 SWSKSQPCYVNREIISLLSTLGIRDEIFVAMQQDEMRETEEMLTNKEVALSVLGKLGGSE 678
Query: 589 YDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAG-----KLPVTESYYLMGTVDPT 643
T+ +M+L G EP + LS+++K +++ K+ V + L+G +D T
Sbjct: 679 TK-TAVKMLLQGY---EPSSEPYLSMILKAHQENRLTDIRTRCKIHVPKGRVLIGCLDET 734
Query: 644 GILKSNEVCIIL-------KDGQVSW------------EKVLVYRNPGLHFGDIHVLKAT 684
G+L+ +V I + KD S+ KV + +NP LH GDI VL+A
Sbjct: 735 GVLEYGQVYIRITKNSKEQKDSNQSYFYNDDGKTATVVGKVAITKNPCLHPGDIRVLEAI 794
Query: 685 YVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMS 744
Y +L V + FP G R +E +GGD DGD+YF++ + +L+ E+ +
Sbjct: 795 YDPDLVGMVD----CLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLI-----PEKVDT 845
Query: 745 TSKNLSANKRLID--FSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDE 802
+ R++D +LEE++ +N D A+ L D
Sbjct: 846 PMDYTATRPRIMDHVVTLEEIQKHFVDYMIN-------------DSLGAISTAHLIHADR 892
Query: 803 SAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTS 862
S + A L+L ++ A+D K+G E+P L+ ++P +M R E + S
Sbjct: 893 SPLK--ARSPECLQLATLHSMAVDF-AKTGAPAEMPRTLRPREYPDFMERWEKPMYISNG 949
Query: 863 VLGTIYNTV-----KSYEAVDRSVTEIWKLPCFDDG--VPEA-------------CMTKW 902
VLG +Y + KS ++ S + P +D VP + K
Sbjct: 950 VLGKLYRSAMGHMEKSGDSGALSSSSAQPSPTYDPDLEVPGSDEFLQAAEEYYELYEEKL 1009
Query: 903 KGYYDQYRWEMKEAIDKCTVERE------------EAAELVIEKYKQILYGAAEFEQSTR 950
+ YR E+++ I + + E + ++ + A + S+R
Sbjct: 1010 TTLMNYYRAELEDEILTGNIRNKMLYLKRDNKRYFEMKDRIVAAVDALHREARGWLLSSR 1069
Query: 951 TLEEIYNEALAIYNITYDLAASRRQVSYCSFAWRV--------AGSALRKFYARRQGDR- 1001
E+ A A Y +TY RR + SF W A S LR+ RRQ D
Sbjct: 1070 KEEDASRMASAWYRVTYH-PDRRRGKRFWSFPWIACDNLLAIKASSQLRR---RRQKDDD 1125
Query: 1002 -----SMLCSA 1007
M CSA
Sbjct: 1126 STAVVQMDCSA 1136
>gi|226490831|ref|NP_001142097.1| uncharacterized protein LOC100274261 [Zea mays]
gi|194707104|gb|ACF87636.1| unknown [Zea mays]
Length = 552
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 112/409 (27%), Positives = 184/409 (44%), Gaps = 65/409 (15%)
Query: 524 LEVVK-TSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSF 582
LEVV T QP +L+R +I LLS VP+ F + L + + S+ A +
Sbjct: 11 LEVVSWTKFQP--GFLNRQIITLLSSLNVPDAIFAQMQEAMLSNLNNILSDSDVAFDI-V 67
Query: 583 NYGGMDYDFTSARMILSGISL-DEPYLQHRL-SILMKEEKKSLQAGKLPVTESYYLMGTV 640
+ T+A M+ +GIS EP+L+ L +I + L+ ++ V + +LMG +
Sbjct: 68 TASCAEQGTTAALMLSAGISPGTEPHLKAMLLAIRSSQLLGLLEKTRIFVPKGRWLMGCL 127
Query: 641 DPTGILKSNEV-----------CII-----LKDGQVSWEKVL----VYRNPGLHFGDIHV 680
D GIL+ + C++ L + E +L + +NP LH GD+ +
Sbjct: 128 DELGILEQGQCFIRASSPSLNNCLVKYGSRLSAANTNAETILGTIVMAKNPCLHPGDVRI 187
Query: 681 LKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESE 740
L+A V EL V + FP G R A+E +G D DGD+YFV+ + L+ K+S
Sbjct: 188 LEAVDVPELHHLVD----CLVFPKKGERPHANEASGSDLDGDLYFVTWDENLIPPGKKS- 242
Query: 741 RWMSTSKNLSANKRLI-DFSLEELESELFKLFLNTRFCP-SNAKSLAADCWQAVMDRFLT 798
W + + K+L S ++ K +N + P SNA + AD
Sbjct: 243 -WNPMDYSPAEAKQLPRAVSQHDIVGFFLKNMVNEKLGPISNAHVVHAD----------- 290
Query: 799 LGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSF 858
E AM E ++L + A+D P K+G V +P L+ + +P +M +++++S+
Sbjct: 291 -----MSEYGAMDEKCIQLAELAATAVDFP-KTGKIVSMPASLRPKLYPDFMGKEDAISY 344
Query: 859 ESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCFDDGVPEACMTKWKGYYD 907
S +LG +Y +++ + DD VPE T YD
Sbjct: 345 RSEKILGRLYRSIQEASS--------------DDLVPEETCTSNNLPYD 379
>gi|255944161|ref|XP_002562848.1| Pc20g02950 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587583|emb|CAP85624.1| Pc20g02950 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1368
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 164/698 (23%), Positives = 271/698 (38%), Gaps = 147/698 (21%)
Query: 260 LLVKF-DEELGG--HRSSNNWNDS-YSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKD 315
L V+F DE+ G + S ND Y++ GI +G R Y F F + E
Sbjct: 503 LRVRFTDEKTEGRINASQRGCNDEVYTRVKRTLANGIAIGDRHYEFLAFGNSQFREHG-- 560
Query: 316 PSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILS 375
YFV ++ +S T+ F H+R +VA Y +RL S
Sbjct: 561 -------AYFVAPDAG----------ISAGTIRAWMGQFNHIR---NVAKYTARLGQCFS 600
Query: 376 KTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYK 435
T F+ +++ I PC D + ++G +DG G IS+ LA
Sbjct: 601 TTRA----FTGSSVQTI---PCDD-----IIRNG--FTFSDGVGKISKFLA--------- 637
Query: 436 EKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKL 495
++ + D+ ++ GEPP Q RL KG L+++
Sbjct: 638 ----------------QMVTSQHDI---KTLTGEPPSAFQFRL----GGAKGMLVVSTDP 674
Query: 496 PPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIF 555
PQ + IRPS K + + LE+++ S T L+R +I +LS G+P+
Sbjct: 675 LPQEVHIRPSQQKFETSQ--------AGLEIIRWSQYSLAT-LNRQIILVLSALGIPDEV 725
Query: 556 FLDILRNALDDARGVFSNKRNALKVSFNY-GGMDYDFTSARMILSGISLDE-PYLQHRLS 613
F L L N A+ + Y T A+M+ G +E P++ L
Sbjct: 726 FHSKLNTMLGSFHRAMLNDSKAINLLQKYIDPNQMTLTLAQMVSDGFRRNEEPFVNTMLE 785
Query: 614 ILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKSN----------------------- 649
+ K L + K+ + + ++G +D TG+LK
Sbjct: 786 LWKSWHLKHLKEKAKIAIDQGANVLGVMDETGVLKGYFRKELPSRRASYAEKLAALPEIF 845
Query: 650 -EVCIILKDGQVSWEKV----LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPC 704
+VC + DG +E + ++ RNP LH GDI V++A EL + + P
Sbjct: 846 VQVCRL--DGGGEYEVIEGLCILARNPSLHPGDIRVVRAVNRSELHAL----RDVVVLPQ 899
Query: 705 NGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELE 764
G + +A +GGD DGD Y V +P L+ W + +K D +
Sbjct: 900 TGDQDIASMCSGGDLDGDDYLVIWDPNLI-----PANWFVECMDYKGSK-APDLDHDVTV 953
Query: 765 SELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDA 824
E+ F+ + DC + L D + ++ +RL ++ DA
Sbjct: 954 DEITSFFVTY---------MKNDCLPRIAHAHLAWADRLP--RGVWEDKCIRLAQLHSDA 1002
Query: 825 LDAPKKSGIKVEVPEDLKVEKFPCYM----RRDESVSFESTSVLGTIYNTVKSYEAVDRS 880
+D KSG + L + +P +M +R S+ ++ST +LG +Y+ V + + V +
Sbjct: 1003 VDY-NKSGAHARMARSLDPKFWPHFMEKRFKRPSSI-YKSTKILGQLYDAVITPDFVPKL 1060
Query: 881 VTEIWKLPCFDDGVPEACMTKWKGYYDQYRWEMKEAID 918
FD + E+ + Y +Y E+K D
Sbjct: 1061 EKP------FDSRILESPLAPASEAYMEYARELKAEFD 1092
>gi|409083384|gb|EKM83741.1| hypothetical protein AGABI1DRAFT_66661 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1198
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 163/730 (22%), Positives = 293/730 (40%), Gaps = 145/730 (19%)
Query: 191 MARFESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHL 250
M+ FE+ +++ +++ ++L + G + I T + +GPY Q+ L
Sbjct: 364 MSSFEAT------KRDFEKQENTLTLVPEDGSYYQSLHVIITPTTMSLQGPYPEQSNRVL 417
Query: 251 QR------------ELGDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIAREGILVGLRC 298
+R DDN L ++FD ++ G + + ++G+ + R
Sbjct: 418 RRYDSKNHESFLRVTFRDDNYLQLRFDRDVDGPSFIRD------RVGRFLKQGLSIAGRT 471
Query: 299 YHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVR 358
+ F + +E +FV+ F + Y + KT+ ++ F ++
Sbjct: 472 FTFLAYSQSALKEHS---------VWFVK----KFHNAPYGDV-DAKTIIDSLGTFDNLS 517
Query: 359 TVSSV----ANYMSRLSLILSKTMKLEVDFSRINIERIED-EPCRDKDGNVVYKDGEALI 413
++ A Y +R+S + T D + +++E + + + + DG V+
Sbjct: 518 YDPTLKLCPARYAARISQAFTAT-----DAAVVSVEEVLNLDDIKTSDGKYVF------- 565
Query: 414 HTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLL 473
TDG G +S+DLA + + R + P
Sbjct: 566 -TDGVGTMSQDLA------------------------RAIWGKLRSAKRKSGRSSDYPHA 600
Query: 474 MQVRLFYNGTAVKGTLLLNKKL-PPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQ 532
QVR KG L ++ L TI +RPSM K +A+ G +E+ + ++
Sbjct: 601 YQVRFL----GSKGMLSIDHTLNGAHTIALRPSMTKFEAE----SGSGEQEIEIARAFDR 652
Query: 533 PRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYG-GMDYDF 591
P YL+R LI LL G+P FL +A+ + R A ++ +G G +
Sbjct: 653 PTAYYLNRPLITLLEGLGIPTNVFLKFQNDAVQETRSATLTLSKAARLLETHGLGASFRL 712
Query: 592 TSARMILSGISL----DEPYLQHRLSILMKEEKKSLQ-AGKLPVTESYYLMGTVDPTGIL 646
+ L+ + L D+P+ L I + + L+ ++PV +++ L+G D L
Sbjct: 713 PATMTSLAKLGLGSIHDDPFYGKLLQIAVHHVLRDLKHHARIPVPDAWTLVGVADVHSYL 772
Query: 647 KSNEVCIILKD---GQVSWEK-VLVYRNPGLHFGDIHVLKATYV-KELEDFVGTSKY-AI 700
+ EV +K G + E +L+ R+P +H GD+ ++KA V E F + +
Sbjct: 773 EEGEVFACVKHQTRGIIFLEGLLLISRSPTIHPGDVQIVKAIGVPPEGSCFAREPLHNTV 832
Query: 701 FFPCNGPRSLADEIAGGDFDGDMYFV---SRNPELLKH---FKESERWMSTSKNL----S 750
F G R L + GGD DGD+Y V +P+ + +K +E + T + L S
Sbjct: 833 VFSVKGRRPLPSCLGGGDLDGDIYNVLPLKEHPDFMPRRATYKPAE-YAPTQRKLLDQPS 891
Query: 751 ANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAM 810
+ DF +E + S+ + A W L + D+S
Sbjct: 892 TMDDVADFVME--------------YIISDVVGIIAINW-------LIIADQSP--AGIE 928
Query: 811 KENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPC--------YMRRDESVSFESTS 862
E+ LRL ++ DA+D P KSG V PE + KFP + D + ++S
Sbjct: 929 DEDCLRLAQLHSDAVDYP-KSGRAVN-PESIPKLKFPMKPDWNAPETINPDSANYYQSRK 986
Query: 863 VLGTIYNTVK 872
+G ++ VK
Sbjct: 987 AVGVLFREVK 996
>gi|156379597|ref|XP_001631543.1| predicted protein [Nematostella vectensis]
gi|156218585|gb|EDO39480.1| predicted protein [Nematostella vectensis]
Length = 523
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 146/589 (24%), Positives = 250/589 (42%), Gaps = 133/589 (22%)
Query: 359 TVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGT 418
++ V Y+SR+ S ++ D I ++ IE C +KD + + ++ TDG
Sbjct: 10 SIRCVGTYVSRMGQCFSTSL----DTVGITVDGIE---CLEKDD--IQTEEKSYTFTDGI 60
Query: 419 GFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRL 478
G IS LA K + K+ P Q+R
Sbjct: 61 GGISSQLARKVTIKIGKDFI--------------------------------PSAFQIR- 87
Query: 479 FYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYL 538
Y G KG L ++K L + + RPSM K ++ + LEV++TS +P+ YL
Sbjct: 88 -YAG--CKGVLAVDKSLGEKQLFCRPSMRKFQS--------SHRRLEVLQTS-RPQAVYL 135
Query: 539 SRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALK--VSFNYGGMDY-DFTSAR 595
+ +I LLS G+ + F+ +L LD+ G ++R A++ S G+ Y D A
Sbjct: 136 NHQVIMLLSNLGISDDVFMSLLEKTLDNLGGTLLDERLAMRQLSSAVKRGISYRDLFDAG 195
Query: 596 MILSG----ISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEV 651
+ L+ SL+ + RL L+ + + +LP+ + +MG VD TG+L+ +V
Sbjct: 196 VHLTVEPFFRSLNAAVYRDRLMQLLMKARM-----QLPLESARLMMGVVDETGVLEYGQV 250
Query: 652 CII---------------LKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTS 696
+ L D +V V+V RNP LH GD+ L A +L V
Sbjct: 251 FVQYSAASNDPRSDKEFELSDKRVLKGPVVVTRNPCLHPGDVRRLVAIDTPKLRHLVD-- 308
Query: 697 KYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKH----------FKESERWMSTS 746
+ FP G R E+AGGD DGD+YFV L+ +K + +
Sbjct: 309 --CVVFPKTGQRPHPSEMAGGDLDGDLYFVCWYKPLIPSQEISLYDPMDYKAPPKREDRT 366
Query: 747 KNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEE 806
+ SA+ + + ++ + ++ + N+ +A+ D+ +
Sbjct: 367 EITSAD--MTQYIVDYIRMDILGVIDNSH--------------KALADKL---------K 401
Query: 807 KAAMKENMLRLINIYYDALDAPKKSGIKVEVPE--DLKVEK-FPCYMRRDESVSFESTSV 863
K E L L + A+DAPK + P+ LK+ K +P +M + + ++ S +
Sbjct: 402 KGVQSEECLFLAEAHSYAVDAPKTG----QWPDLNGLKLPKSYPDFMMKTDKPTYRSKKL 457
Query: 864 LGTIYNTVKSYE--AVDRSVTEIWKLPCFDDGVPEACMTKWKGYYDQYR 910
LG +Y + +S++ A D + EI K PC D P + ++ + D+ +
Sbjct: 458 LGKLYRSCRSFKKLAEDSAPKEITK-PCLD---PNLLVAGYRRFLDEAK 502
>gi|242072310|ref|XP_002446091.1| hypothetical protein SORBIDRAFT_06g001600 [Sorghum bicolor]
gi|241937274|gb|EES10419.1| hypothetical protein SORBIDRAFT_06g001600 [Sorghum bicolor]
Length = 204
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 109/187 (58%), Gaps = 11/187 (5%)
Query: 835 VEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSY--EAVDRSVTEIWKLPCFDD 892
V V +L+VE +P +M + + S+ STS+LG IY+ + + D + +I LPCFD+
Sbjct: 19 VTVDRNLRVEAYPHFMEK-KGKSYHSTSILGKIYDETEKIISQQCDEQI-QITTLPCFDE 76
Query: 893 --GVPEACMTKWKGYYDQYRWEMKEAIDKCTVEREEAAELVIEKYKQILYGAAEFEQSTR 950
P AC + W+ Y +Y + ++ D E+ + + + + YK +LY A EFE+++R
Sbjct: 77 VEATP-ACTSLWEQRYQEYLTKSRQLFDLEKEEKNDEFQKLYQSYKHLLYNANEFEETSR 135
Query: 951 TLEEIYNEALAIYNITYDLAASRRQVSYCSFAWRVAGSALRKF----YARRQGDRSMLCS 1006
L +++ EA AIY I Y+ A S R ++ C F W VAG+AL YA + G+++ LC
Sbjct: 136 DLSDVFMEACAIYRIVYERARSTRSLTKCRFVWNVAGAALCYLHATKYAVQHGEKTALCP 195
Query: 1007 ASVLREI 1013
SV+R++
Sbjct: 196 LSVIRQL 202
>gi|116193483|ref|XP_001222554.1| hypothetical protein CHGG_06459 [Chaetomium globosum CBS 148.51]
gi|88182372|gb|EAQ89840.1| hypothetical protein CHGG_06459 [Chaetomium globosum CBS 148.51]
Length = 1572
Score = 113 bits (283), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 173/670 (25%), Positives = 267/670 (39%), Gaps = 138/670 (20%)
Query: 257 DNILLVKFDEEL--GGHRSSNNWNDS--YSKYNEIAREGILVGLRCYHFFVFKDGGKEEK 312
D+ + V+F +EL G R+S+ D Y++ + +GI +G + F F + E
Sbjct: 522 DHFIRVQFTDELLDGRIRASDVDRDDELYARVCRVMTQGIRMGKWHWKFLAFGNSQIREN 581
Query: 313 KKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSL 372
+F E T H R + +SSVA +RL
Sbjct: 582 GA--------FFFCEPEDGT------------TTCHSIREWMGNFDHISSVAKLAARLGQ 621
Query: 373 ILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTY 432
S T L I+ RI P ++ DG TDG G IS LA
Sbjct: 622 CFSTTRLLNC----ISAPRIVKIP------DIESNDG--FCFTDGVGKISFPLASLV--- 666
Query: 433 VYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLN 492
S ID + P Q R+ KG L+
Sbjct: 667 ----------SEAWKIDTR-------------------PSAFQFRM----GGCKGVLVTW 693
Query: 493 KKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVP 552
+ +RPS K A+ +N LE+++ S T L+R I +LS GVP
Sbjct: 694 PDAKGTEVHVRPSQEKFSAE--------YNGLEIIRCSQFSCPT-LNRQTILILSCLGVP 744
Query: 553 EIFFLDILRNALDDARGVFSNKRNALKVSFNY-GGMDYDFTSARMILSG-ISLDEPYLQH 610
+ F+D++ + +N+ A+++ Y G T A MIL+G + EP+++
Sbjct: 745 DDVFIDMMAGQIASYDTAMTNQDRAIELLSKYVDGNMTTTTIATMILNGFMHTREPFVRT 804
Query: 611 RLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDG----------- 658
L + K L + +L V + +L+G VD TG L+ + ++G
Sbjct: 805 LLQLWRSWSIKGLKEKARLVVDQGAFLLGCVDETGTLRGHSRATEGRNGITQNDLPQIFL 864
Query: 659 QVSWEK-----------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGP 707
QV K +V RNP LH GDI V++A V EL + + FP G
Sbjct: 865 QVPDRKDRGAYKVVTGICIVGRNPSLHPGDIRVVEAVDVPELRHL----RDVVVFPLKGD 920
Query: 708 RSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESEL 767
R + +GGD DGD +FV +P+L+ W N +A + L + S E + + L
Sbjct: 921 RDVPSMCSGGDLDGDDFFVIWDPKLI-----PPEWSHPPMNYTAPEPLNE-SQESIVNSL 974
Query: 768 ---FKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDA 824
F LF+ P L A A D +T A L+L +++ A
Sbjct: 975 AFFFVLFMKNDRLP-----LIAHAHLATADYEVT---------GAKHWKCLQLASLHSIA 1020
Query: 825 LDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEI 884
+D K+GI + L K+P +M + ++ S+ STSVLG +Y+ + E D +
Sbjct: 1021 VDY-VKTGIPARWNKKLDPRKYPHFMEKAKAKSYRSTSVLGKLYDMIDK-EVFDNR--DN 1076
Query: 885 WKLPCFDDGV 894
+KLP FDD +
Sbjct: 1077 YKLP-FDDRI 1085
>gi|260801475|ref|XP_002595621.1| hypothetical protein BRAFLDRAFT_64731 [Branchiostoma floridae]
gi|229280868|gb|EEN51633.1| hypothetical protein BRAFLDRAFT_64731 [Branchiostoma floridae]
Length = 1492
Score = 113 bits (283), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 139/535 (25%), Positives = 228/535 (42%), Gaps = 97/535 (18%)
Query: 360 VSSVANYMSRLSLILSKTMKLEVDFSRINIERIED-EPCRDKDGNVVYKDGEALIHTDGT 418
V A Y++R+ S T + V + RI D E RD DG ++ +DG
Sbjct: 588 VRCPATYLARMGQCFS-TTESSVTVRPGQVSRIADIEGGRDPDG-------KSYCFSDGI 639
Query: 419 GFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRL 478
G IS DLA KE C + T+RS + P QVR
Sbjct: 640 GKISRDLA--------KEVC---EKTQRSHE---------------------PSAFQVR- 666
Query: 479 FYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYL 538
Y G VKG L ++ L +Q R SM K ++ N++E+ S+ P + YL
Sbjct: 667 -YAG--VKGMLAVDPTLTGLAMQYRKSMEKFSSEH--------NNIEICSESH-PARFYL 714
Query: 539 SRNLIALLSYGGVPEIFFLDILRNALDDARGVF---SNKRNALKVSFNYGGMDYDFTSAR 595
+R +I++LS G+P+ F + + L +F + +AL G+ Y +
Sbjct: 715 NRQIISILSGLGIPDEVFQVLQEDQLRKLASMFLLENRAVDALNQRAQLSGVPYQ----K 770
Query: 596 MILSGISLD-EPYLQHRLSILMKE---EKKSLQAGKLPVTESYYLMGTVDPTGILKSNEV 651
+ G+ + EP+ + L + K + + ++P ++G +D TG L+ +V
Sbjct: 771 LSNCGVYMTREPFFKGMLRRVYKSGIGDTRRKARIEIPPEYGRNMLGVLDETGTLEYGQV 830
Query: 652 CI-----ILKDG---QVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFP 703
+ I G +V V+V RNP H GD+ L+A V L V I FP
Sbjct: 831 FVQYTEDITDKGGETKVLTGDVVVSRNPCFHPGDVRKLRAVDVPALHHMVDV----IVFP 886
Query: 704 CNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEEL 763
GPR +E++GGD DGD +FV+ +P+LL +R + + A K+ +
Sbjct: 887 SKGPRPHPNEMSGGDLDGDQFFVTWHPDLL-----FQRPNADPMHFKAPKK--------I 933
Query: 764 ESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYD 823
E E+ + F KS D + + L D+ EE + L L + D
Sbjct: 934 ELEIVTISDLQNFIVDYIKS---DILGVIANAHLAFSDK--EEDGVFSQVCLNLAEKHSD 988
Query: 824 ALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSF-ESTSVLGTIYNTVKSYEAV 877
A+D P K+G+ V + +D + + +P +M + + S +G +Y ++ E +
Sbjct: 989 AVDFP-KTGVPVGLSDDERPKAYPDFMDKSHKKTVRRSEKAMGEMYRECQAIENI 1042
>gi|383100937|emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
Length = 1107
Score = 112 bits (281), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 195/846 (23%), Positives = 350/846 (41%), Gaps = 160/846 (18%)
Query: 194 FESEVWEKLGRKNISQEDR---RMSLKWDSGKTHMYHCHISTKGNCTFKGPYLN---QTR 247
+E W + K +S + + ++ D G +MY + T F GP +N +
Sbjct: 334 YEPARWLRKQYKELSSKGKLPLSPTISLDDGLVYMYRVQV-TPARVYFSGPEVNVSNRVL 392
Query: 248 THLQRELGDDNILLVKF-DEELGGHRS--------SNNWNDSYSKYNEIAREGILVGLRC 298
H + + +N L V F DE+L RS + Y + + R+GI++G +
Sbjct: 393 RHYSKYI--NNFLRVSFVDEDLEKVRSMDLSPRSSTQRRTKLYDRIYSVLRDGIVIGDKK 450
Query: 299 YHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYM--FMH 356
+ F F S+S ++ E+SA++ + I + H +M F H
Sbjct: 451 FEFLAF------------SSSQLR------ENSAWM---FAPIDGLTSAHIRAWMGDFDH 489
Query: 357 VRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTD 416
+R +VA Y +RL S + + +N+ E E D + + G + +D
Sbjct: 490 IR---NVAKYAARLGQSFSSSRET------LNVRSDEIEVIPDVE---IISLGTRYVFSD 537
Query: 417 GTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQV 476
G G IS + A R + +K FS P Q+
Sbjct: 538 GIGKISAEFA-------------------RRVAKKCGLTEFS------------PSAFQI 566
Query: 477 RLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSN-QPRK 535
R Y G KG + ++ + + +R SM K +++ L+V+ S QP
Sbjct: 567 R--YGG--YKGVVAVDPN-SSKKLSLRKSMSKFESEN--------TKLDVLAWSKYQP-- 611
Query: 536 TYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALK-VSFNYGGMDYDFTSA 594
Y++R LI LLS GV + F R +D + ++ A + + G + + A
Sbjct: 612 CYMNRQLITLLSTLGVKDSVFKKKQREVVDRLDAILTDPLEAHEALGLMAPGENTNILKA 671
Query: 595 RMILSGISLD-EPYLQHRLSILMKEEKKSLQA-GKLPVTESYYLMGTVDPTGILKSNEVC 652
+IL G D EP+L L + L+ ++ ++ +MG +D T L+ +V
Sbjct: 672 -LILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCLDETRTLEYGQVV 730
Query: 653 IILKDGQVSWEK------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNG 706
+ D + V+V +NP LH GD+ VL+A V L V + FP G
Sbjct: 731 VQYSDPMRPGRRFIITGPVVVAKNPCLHPGDVRVLEAVNVPALNHMVD----CVVFPQKG 786
Query: 707 PRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESE 766
R +E +G D DGD+YFV + EL+ + SE T + A D ++EE+E
Sbjct: 787 LRPHPNECSGSDLDGDIYFVCWDQELIPP-RTSEPMDYTPE--PAQILDHDVTIEEVEEY 843
Query: 767 LFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALD 826
+N ++ + A+ A D+ E A + + L + A+D
Sbjct: 844 FANYIVN------DSLGIIANAHTAFADK---------EPLKAFSDPCIELARKFSVAVD 888
Query: 827 APKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVK------------SY 874
PK +G+ E+P+ L V+++P +M + + ++ES +V+G ++ VK +
Sbjct: 889 FPK-TGVAAEIPQHLHVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTL 947
Query: 875 EAVDRSVTEIWKLPCFDDGVPEACMTKWKGYYDQYRWEMKEAIDKCTVEREEAAELV--- 931
+ +S + ++ F++ V EA +K YD +++ +D ++ E AE++
Sbjct: 948 DVALKSYDKDMEVDGFEEYVDEAF--HYKANYD---FKLGNLMDYYGIKTE--AEILSGG 1000
Query: 932 IEKYKQILYGAAEFEQSTRTLEEIYNEALAIYNITYD-----LAASRRQVSYCSFAWRVA 986
I + + + E R + + E L+++N T + A++ V+Y S W +
Sbjct: 1001 IMRMSKSFTKRRDAESIGRAVRALRKETLSLFNATEEENESAKASAWYHVTYHSSYWGLY 1060
Query: 987 GSALRK 992
L +
Sbjct: 1061 NEGLNR 1066
>gi|426201566|gb|EKV51489.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
Length = 1198
Score = 112 bits (281), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 158/716 (22%), Positives = 286/716 (39%), Gaps = 137/716 (19%)
Query: 204 RKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQR----------- 252
+++ +++ ++L + G + I T + +GPY Q+ L+R
Sbjct: 371 KRDFEKQENTLTLVPEDGSYYQSLHVIITPTTMSLQGPYPEQSNRVLRRYDSKNHESFLR 430
Query: 253 -ELGDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEE 311
DDN L ++FD ++ G + + ++G+ + R + F + +E
Sbjct: 431 VTFRDDNYLQLRFDRDVDGPSFIRD------RVGRFLKQGLSIAGRTFTFLAYSQSALKE 484
Query: 312 KKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSV----ANYM 367
+FV+ F + Y + KT+ ++ F ++ ++ A Y
Sbjct: 485 HS---------VWFVK----KFHNAPYGDV-DAKTIIDSLGTFDNLSYDPTLKLCPARYA 530
Query: 368 SRLSLILSKTMKLEVDFSRINIERIED-EPCRDKDGNVVYKDGEALIHTDGTGFISEDLA 426
+R+S + T D + +++E + + + + DG V+ TDG G +S+DLA
Sbjct: 531 ARISQAFTAT-----DAAVVSVEEVLNLDDIKTSDGKYVF--------TDGVGTMSQDLA 577
Query: 427 LKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVK 486
+ + R + P QVR K
Sbjct: 578 ------------------------RAIWGKLRSAKRKSGRSSDYPHAYQVRFL----GSK 609
Query: 487 GTLLLNKKL-PPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIAL 545
G L ++ L TI +RPSM K +A+ G +E+ + ++P YL+R LI L
Sbjct: 610 GMLSIDHTLNGAHTIALRPSMTKFEAE----SGSGEQEIEIARAFDRPTAYYLNRPLITL 665
Query: 546 LSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYG-GMDYDFTSARMILSGISL- 603
L G+P FL +A+ + R A ++ +G G + + L+ + L
Sbjct: 666 LEGLGIPTNVFLKFQNDAVQETRSATLTLSKAARLLETHGLGASFRLPATMTSLAKLGLG 725
Query: 604 ---DEPYLQHRLSILMKEEKKSLQ-AGKLPVTESYYLMGTVDPTGILKSNEVCIILKD-- 657
D+P+ L I + + L+ ++P+ +++ L+G D L+ EV +K
Sbjct: 726 SIHDDPFYGKLLQIAVHHVLRDLKHHARIPIPDAWTLVGVADVHSYLEEGEVFACVKHQT 785
Query: 658 -GQVSWEK-VLVYRNPGLHFGDIHVLKATYV-KELEDFVGTSKY-AIFFPCNGPRSLADE 713
G + E +L+ R+P +H GD+ ++KA V E F + + F G R L
Sbjct: 786 RGIIFLEGLLLISRSPTIHPGDVQIVKAIGVPPEGSCFAREPLHNTVVFSVKGRRPLPSC 845
Query: 714 IAGGDFDGDMYFV---SRNPELL--KHFKESERWMSTSKNL----SANKRLIDFSLEELE 764
+ GGD DGD+Y V +P+ + + E + T + L S + DF +E
Sbjct: 846 LGGGDLDGDIYNVLPLKEHPDFMPKRATYEPAEYAPTQRKLLDQPSTMDDVADFVME--- 902
Query: 765 SELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDA 824
+ S+ + A W L + D+S E+ LRL ++ DA
Sbjct: 903 -----------YIISDVVGIIAINW-------LIIADQSP--AGIEDEDCLRLAQLHSDA 942
Query: 825 LDAPKKSGIKVEVPEDLKVEKFPC--------YMRRDESVSFESTSVLGTIYNTVK 872
+D P KSG V PE + KFP + D + ++S +G ++ VK
Sbjct: 943 VDYP-KSGRAVN-PELIPKLKFPMKPDWNAPETINPDSANYYQSRKAVGVLFREVK 996
>gi|197223664|gb|ACH53360.1| RNA-directed RNA polymerase 1a [Hordeum vulgare]
Length = 1114
Score = 112 bits (281), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 179/757 (23%), Positives = 306/757 (40%), Gaps = 156/757 (20%)
Query: 144 HRASIPQYVALGELEFRKAFLILSYIGENSLEEVITADEIRGMRDLQMARFESEVWEKLG 203
+R P YV + + + A +SY+ + L + E +++Q++R L
Sbjct: 309 YRLVSPGYVCIDHI--KHALENMSYLKKTCLNPINWLSE--KYKEIQISR------HMLT 358
Query: 204 RKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGD-DNILLV 262
NI+ +D G ++Y I T F GP +N + ++ D +N L +
Sbjct: 359 SPNIALDD--------DGLAYVYRVQI-TPAKVYFYGPEINVSNRVVRNYSADLENFLRI 409
Query: 263 KF-DEELGGHRSS---------NNWNDS--YSKYNEIAREGILVGLRCYHFFVFKDGGKE 310
F DE+ RS+ NN + + Y++ + GI +G + + F F
Sbjct: 410 SFVDEDCEKLRSTDLSPRYAPGNNASRTALYNRILSVLSNGITIGNKHFEFLAF------ 463
Query: 311 EKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRL 370
S+S ++ ++SA++ +G + + R + R + +VA Y +RL
Sbjct: 464 ------SSSQLR------DNSAWMFASR----TGLSASDIREWMGNFRNIRNVAKYAARL 507
Query: 371 SLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCP 430
S + + + + + E + + +G + +DG G IS D A
Sbjct: 508 GQSFSASTE------TLKVHKYEVQALPE------VTNGTKYVFSDGIGTISADFA---- 551
Query: 431 TYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLL 490
+ RK A F+ P Q+R Y G KG +
Sbjct: 552 ---------------DEVSRKCKLARFT------------PSAFQIR--YGG--YKGVVA 580
Query: 491 LNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGG 550
++ + + +R SM K S+ T + L K QP +L+R LI LLS G
Sbjct: 581 IDPR-SHWKLSLRSSMSKFP-----SENITLDVLAYSKY--QP--CFLNRQLITLLSTLG 630
Query: 551 VPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLD-EPYLQ 609
V + F + A+ + + + A+ + ++L G D EPYL
Sbjct: 631 VRDNIFELKQQAAVMQLNRLVTEPQAAIDAIELMPMGEITNVVKELLLCGYQPDVEPYLS 690
Query: 610 -----HRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILK------DG 658
R S L++ + KS ++ + E +MG +D T LK EV I D
Sbjct: 691 MILQTFRASKLLELKTKS----RIFIPEGRAMMGCLDETRTLKYGEVFIQASNSANESDK 746
Query: 659 QVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGD 718
V KV+V +NP LH GDI +LKA Y L+ V + FP GPR +E +G D
Sbjct: 747 FVVTGKVVVAKNPCLHPGDIRILKAVYTPVLDHMVN----CVVFPQQGPRPHPNECSGSD 802
Query: 719 FDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFS--LEELESELFKLFLNTRF 776
DGD+YFVS +P+L+ R ++ A +D +EE+ +N
Sbjct: 803 LDGDIYFVSWDPDLI-----PTRMVAPMDYTPAPTETLDHDVVIEEVHEYFANYIVNESL 857
Query: 777 -CPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKV 835
+NA + AD E A ++L ++ A+D P K+G+
Sbjct: 858 GIIANAHVVFAD----------------KESLKAESTQCIKLAELFSIAVDYP-KTGVPA 900
Query: 836 EVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVK 872
++P +L V ++P +M + + ++ S V+G +Y +K
Sbjct: 901 QIPSELHVREYPDFMEKLDRATYISKGVIGKLYREIK 937
>gi|13641451|gb|AAK31733.1| suppressor of ascus dominance [Neurospora crassa]
Length = 1638
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 155/593 (26%), Positives = 245/593 (41%), Gaps = 119/593 (20%)
Query: 329 ESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRIN 388
E+ AF+ Q L+G + F H++ + A Y +RL S T + I
Sbjct: 622 EAGAFM-FCEQSNLTGDMMRAWMGRFSHIKVI---AKYAARLGQCFSTTRLV----PGIP 673
Query: 389 IERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSI 448
RI P +KDG TDG G IS LA K D SI
Sbjct: 674 APRIVTIPDVEKDG---------FCFTDGVGKISPLLA----------KIVAHDW---SI 711
Query: 449 DRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIK 508
D PP Q R+ KG L+ + + IR S K
Sbjct: 712 D-------------------PPPSAYQFRM----GGCKGVLVTWPDVKGMEVHIRKSQEK 748
Query: 509 VKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDAR 568
A+ FN LEVV+ S T L+R +IA+LS GVP+ F+D++ L D
Sbjct: 749 FVAE--------FNGLEVVRCSQFSTAT-LNRQIIAVLSSLGVPDQVFVDMMEQQLSDFN 799
Query: 569 GVFSNKRNALKVSFNYGGMDYDFTS---ARMILSG-ISLDEPYLQHRLSILMKEEKKSL- 623
+K+ A + + +D + + A M+ G + EP+++ L + K+L
Sbjct: 800 AAMEDKQKATAILKTF--IDENHMTPIIAEMLAYGFMGSQEPFVRTLLQLWRSWSIKTLK 857
Query: 624 QAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEKV------------------ 665
+ +L V +S +++G VD TG LK + + +I VS EK+
Sbjct: 858 EKARLNVEKSAFVLGCVDETGTLKGH-MKVIEDWKDVSSEKLPQIFLQIPDDVNGGYRVI 916
Query: 666 ----LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDG 721
+V RNP LH GDI V++A V L + + FP G R + +GGD DG
Sbjct: 917 TGTCVVGRNPSLHPGDIRVVEAVDVPALRHL----RDVVVFPLTGDRDVPSMCSGGDLDG 972
Query: 722 DMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNA 781
D +FV +P L+ KE S+ ++ + + ++ L + F L++ P A
Sbjct: 973 DDFFVIWDPLLIP--KERSHPPMISEPIAGKELATEPTVNNLIT-FFVLYMKYNNLPLIA 1029
Query: 782 KSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDL 841
+ L AE + L L +++ A+D K+G+ E P L
Sbjct: 1030 HA--------------HLATADAEVEGVKSPKCLELASLHSMAVDY-VKTGVAAEFPRRL 1074
Query: 842 KVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCFDDGV 894
+ +P +M ++ ++ S + LG +Y+ VK E D + E ++LP FD+ +
Sbjct: 1075 DPKTWPHFMEKNRH-TYHSVTALGKLYDMVKR-ETFD--MKENYQLP-FDNRI 1122
>gi|242073398|ref|XP_002446635.1| hypothetical protein SORBIDRAFT_06g019330 [Sorghum bicolor]
gi|241937818|gb|EES10963.1| hypothetical protein SORBIDRAFT_06g019330 [Sorghum bicolor]
Length = 1128
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 158/625 (25%), Positives = 256/625 (40%), Gaps = 136/625 (21%)
Query: 281 YSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQY 340
Y + I +EG +G + Y F F S S ++ V M +S
Sbjct: 445 YHRILSILKEGFCIGPKKYEFLAF------------SASQLRGNSVWMFAS-------NN 485
Query: 341 ILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDK 400
L+ +++ F +R+VS A M +L +T ++ S ++E I D
Sbjct: 486 SLTAESIRRWMGHFEDIRSVSKCAARMGQLFSSSRQTFEI----SSYDVEVIPDIE---- 537
Query: 401 DGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFS-D 459
V DG I +DG G IS A +++ F D
Sbjct: 538 ----VTSDGTKYIFSDGIGKISTRFA------------------------RQIAKLFGLD 569
Query: 460 VARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQT---IQIRPSMIKVKADRDLS 516
A PP Q+R Y G KG + ++ P + + +RPSM K ++ +
Sbjct: 570 PA-------HPPSAFQIR--YGG--YKGVITID----PTSFFNLSLRPSMKKFESKSTML 614
Query: 517 DGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRN 576
+ + + +QP Y++R +I+LLS G+ + F + ++ + ++ G+ +NK
Sbjct: 615 NITNW-------SKSQP--CYVNREIISLLSTLGIKDEVFESMQQDDMHESDGMLTNKEA 665
Query: 577 ALKVSFNYGGMDYDFTSARMILSGIS-LDEPYLQHRLSILMKEEKKSL----QAGKLPVT 631
AL V GG D T++ M+L G EPYL L IL L K+ V
Sbjct: 666 ALSVLGKIGGADTK-TASEMVLQGYEPSSEPYL---LMILKAHRANRLTDIRTRCKIHVQ 721
Query: 632 ESYYLMGTVDPTGILKSNEVCIILK-----------------DGQ--VSWEKVLVYRNPG 672
+ L+G +D T L +V I + DG+ V KV V +NP
Sbjct: 722 KGRVLIGCLDETCTLDYGQVYIRITKNRKEQKYSEQPFFCNDDGKTAVIVGKVAVTKNPC 781
Query: 673 LHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPEL 732
LH GD+ VL+A Y L D G + FP G R +E +GGD DGD++F++ + +L
Sbjct: 782 LHPGDVRVLEAVYDPAL-DARGLID-CVVFPQRGERPHPNECSGGDLDGDLFFITWDDKL 839
Query: 733 LKHFKESERWMSTSKNLSANKRLID--FSLEELESELFKLFLNTRFCPSNAKSLAADCWQ 790
+ E+ + + R++D +LEE++ +N D
Sbjct: 840 I-----PEKVDAPMDYTATRPRIMDHAVTLEEIQKHFVNYMIN-------------DALG 881
Query: 791 AVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYM 850
+ L D + + A L+L ++ A+D K+G E+P L+ +FP +M
Sbjct: 882 VISTAHLIHADRNPLK--ARSPECLQLAALHSMAVDF-AKTGAPAEMPVALRPREFPDFM 938
Query: 851 RRDESVSFESTSVLGTIYNTVKSYE 875
R E + STSVLG +Y +E
Sbjct: 939 ERWERPMYVSTSVLGKLYRAALRHE 963
>gi|357117510|ref|XP_003560510.1| PREDICTED: probable RNA-dependent RNA polymerase 2-like
[Brachypodium distachyon]
Length = 1138
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 116/421 (27%), Positives = 192/421 (45%), Gaps = 63/421 (14%)
Query: 498 QTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFL 557
+ + +RPSM K + SD + N + + ++ + +++R +I+LLS G+ + F
Sbjct: 591 RNLSLRPSMRKFE-----SDCRMLN----ITSWSKSQPCHVNREIISLLSTLGIRDEVFE 641
Query: 558 DILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGIS-LDEPYLQHRLSILM 616
+ ++ + + + +NK AL V G + T+A M+L G + EPYL L IL
Sbjct: 642 LMQQDDMCELDEMLTNKEIALSVLGKIGSAETK-TAADMLLQGYKPISEPYL---LMILK 697
Query: 617 KEEKKSL----QAGKLPVTESYYLMGTVDPTGILKSNEVCI-ILKDGQVSWE-------- 663
+ L K+ V + L+G +D TGILK +V I I K+ + E
Sbjct: 698 AHQDNRLTDIRSKFKIHVPKGRVLLGCLDETGILKYGQVYIRITKNNKEQKENEQPYFCK 757
Query: 664 ----------KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADE 713
KV V +NP LH GD+ VL+A V +LE + FP G R +E
Sbjct: 758 DDGKTVTLVGKVAVSKNPCLHPGDVRVLEA--VCDLELHATKLVDCVVFPQRGERPHPNE 815
Query: 714 IAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLID--FSLEELESELFKLF 771
+GGD DGD+YFV+ + L+ E+ + +A R++D +LEE++ +
Sbjct: 816 CSGGDLDGDLYFVTWDDRLI-----PEKADTPMDYTAARPRIMDHVVTLEEIQQHVVNYM 870
Query: 772 LNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKS 831
L +D A+ + L D + A LRL ++ A+D K+
Sbjct: 871 L-------------SDSLGAISNAHLIHADR--DPMKARSPECLRLAALHSMAVDF-AKT 914
Query: 832 GIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYN-TVKSYEAVDRSVTEIWKLPCF 890
G E+P L+ +FP +M R + + ST VLG +Y V E+ +++ P +
Sbjct: 915 GAPAELPRSLRPREFPDFMERWDKPMYISTGVLGKLYRAAVSRMESSHALASQVQSSPTY 974
Query: 891 D 891
D
Sbjct: 975 D 975
>gi|297849898|ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
Length = 1107
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 170/706 (24%), Positives = 294/706 (41%), Gaps = 133/706 (18%)
Query: 194 FESEVWEKLGRKNISQEDR---RMSLKWDSGKTHMYHCHISTKGNCTFKGPYLN---QTR 247
+E W + K +S + + ++ D G +MY + T F GP +N +
Sbjct: 334 YEPARWLRKQYKELSSKGKLPLSPTISLDDGLVYMYRVQV-TPARVYFSGPEVNVSNRVL 392
Query: 248 THLQRELGDDNILLVKF-DEELGGHRS--------SNNWNDSYSKYNEIAREGILVGLRC 298
H + + +N L V F DE+L RS + Y + + R+GI++G +
Sbjct: 393 RHYSKYI--NNFLRVSFVDEDLEKVRSMDLSPRSSTQRRTKLYDRIYSVLRDGIVIGDKK 450
Query: 299 YHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYM--FMH 356
+ F F S+S ++ E+SA++ + I + H +M F H
Sbjct: 451 FEFLAF------------SSSQLR------ENSAWM---FAPIEGLTSAHIRAWMGDFDH 489
Query: 357 VRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTD 416
+R +VA Y +RL S + + +N+ E E D + + G + +D
Sbjct: 490 IR---NVAKYAARLGQSFSSSRET------LNVRSDEIEVIPDVE---IISLGTRYVFSD 537
Query: 417 GTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQV 476
G G IS + A R + +K FS P Q+
Sbjct: 538 GIGKISAEFA-------------------RRVAKKCGLTEFS------------PSAFQI 566
Query: 477 RLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSN-QPRK 535
R Y G KG + ++ + + +R SM K +++ L+V+ S QP
Sbjct: 567 R--YGG--YKGVVAVDPN-SSKKLSLRKSMSKFESEN--------TKLDVLAWSKYQP-- 611
Query: 536 TYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALK-VSFNYGGMDYDFTSA 594
Y++R LI LLS GV + F R +D + ++ A + + G + + A
Sbjct: 612 CYMNRQLITLLSTLGVEDSVFEKKQREVVDRLDAILTDPLEAHEALGLMAPGENTNILKA 671
Query: 595 RMILSGISLD-EPYLQHRLSILMKEEKKSLQA-GKLPVTESYYLMGTVDPTGILKSNEVC 652
+IL G D EP+L L + L+ ++ ++ +MG +D T L+ +V
Sbjct: 672 -LILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCLDETRTLEYGQVV 730
Query: 653 IILKDGQVSWEK------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNG 706
+ D + V+V +NP LH GD+ VL+A V L V + FP G
Sbjct: 731 VQYSDPMRPGRRFIITGPVVVAKNPCLHPGDVRVLEAVNVPALNHMVD----CVVFPQKG 786
Query: 707 PRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESE 766
R +E +G D DGD+YFV + EL+ + SE T + A D ++EE+E
Sbjct: 787 LRPHPNECSGSDLDGDIYFVCWDQELIPP-RTSEPMDYTPE--PAQILDHDVTIEEVEEY 843
Query: 767 LFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALD 826
+N ++ + A+ A D+ E A + + L + A+D
Sbjct: 844 FANYIVN------DSLGIIANAHTAFADK---------EPLKAFSDPCIELARKFSVAVD 888
Query: 827 APKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVK 872
PK +G+ E+P+ L V+++P +M + + ++ES +V+G ++ VK
Sbjct: 889 FPK-TGVAAEIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVK 933
>gi|425783248|gb|EKV21105.1| RNA-directed RNA polymerase (Sad-1), putative [Penicillium digitatum
Pd1]
Length = 1347
Score = 111 bits (278), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 161/698 (23%), Positives = 269/698 (38%), Gaps = 147/698 (21%)
Query: 260 LLVKFDEELGGHRSSNNWNDS----YSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKD 315
L V+F +E R + + DS Y++ GI +G R Y F F + E
Sbjct: 498 LRVRFTDERTEGRINASLGDSNDEIYTRVKRTLANGISIGDRHYEFLAFGNSQFREHG-- 555
Query: 316 PSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILS 375
YF ++ +S T+ F H+R +VA Y +RL S
Sbjct: 556 -------AYFFAPDAG----------VSAATIRAWMGQFNHIR---NVAKYAARLGQCFS 595
Query: 376 KTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYK 435
T ++ C D V ++G +DG G +S+ LA
Sbjct: 596 TTRAF-------TGSSVQVATCND-----VVRNG--FTFSDGVGKVSKFLAQMV------ 635
Query: 436 EKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKL 495
+++ +I ++ GE P Q RL KG L+++
Sbjct: 636 -------TSQHNI---------------KTLTGESPSAFQFRL----GGAKGMLVVSPDP 669
Query: 496 PPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIF 555
PQ + IRPS K + T LE+++ S T L+R LI +LS G+P+
Sbjct: 670 MPQEVHIRPSQQKFET--------TQAGLEIIRWSQYSLAT-LNRQLILVLSALGIPDKV 720
Query: 556 FLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTS---ARMILSGISLDE-PYLQHR 611
F L + L V N A+ + Y +D + T+ A+M+ G +E P+
Sbjct: 721 FHSKLNSMLGSFHRVMCNDSKAINLLQKY--IDPNQTTLILAQMVSDGFRQNEEPFANTM 778
Query: 612 LSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKSN--------------------- 649
L + K L + K+ + + L+G +D TG+LK
Sbjct: 779 LELWKSWHLKHLKEKAKIAIDQGANLLGVMDETGVLKGYFKNTLPRRGASYAQKLAALPE 838
Query: 650 ---EVCIILKDGQ--VSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPC 704
++C + +G+ V ++ RNP LH GDI V++A EL+ + + P
Sbjct: 839 IFVQICRLEGNGEYEVIEGLCILARNPSLHPGDIRVVRAVNRPELKGL----RDVVVLPQ 894
Query: 705 NGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELE 764
G + +A +GGD DGD Y + +P+L+ RW + +K D +
Sbjct: 895 TGDQDIASMCSGGDLDGDDYLIIWDPDLI-----PTRWFVECMDYKGSK-APDLDHDVTV 948
Query: 765 SELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDA 824
E+ F+ + DC + L D + +E +RL ++ DA
Sbjct: 949 DEITSFFVTY---------MKNDCLPRIAHAHLAWADRLP--RGVWEEKCIRLAQLHSDA 997
Query: 825 LDAPKKSGIKVEVPEDLKVEKFPCYM----RRDESVSFESTSVLGTIYNTVKSYEAVDRS 880
+D KSG + L + +P +M +R S+ ++ST +LG +Y+ V + V +
Sbjct: 998 VDY-NKSGAHARMARSLDPKFWPHFMEKRFKRPSSI-YKSTKILGQLYDAVVTPNFVPKL 1055
Query: 881 VTEIWKLPCFDDGVPEACMTKWKGYYDQYRWEMKEAID 918
FD + E+ + Y +Y E+K D
Sbjct: 1056 GKP------FDSRILESPLASASETYIEYARELKAEFD 1087
>gi|225457089|ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [Vitis vinifera]
gi|297733815|emb|CBI15062.3| unnamed protein product [Vitis vinifera]
Length = 1127
Score = 111 bits (278), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 154/628 (24%), Positives = 255/628 (40%), Gaps = 124/628 (19%)
Query: 281 YSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQY 340
Y + I REGI++G + + F F S S ++ V M +S
Sbjct: 443 YHRILSILREGIVIGAKRFQFLAF------------SASQLRSNSVWMFAS-------ND 483
Query: 341 ILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDK 400
+ + E F +R+VS A M +L +T+ + V ++E I D
Sbjct: 484 KVRVDDIREWMGCFKKIRSVSKCAARMGQLFSSSVQTLPVPVQ----DVEVIPDIE---- 535
Query: 401 DGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDV 460
V DG +DG G IS A + +KC
Sbjct: 536 ----VTSDGFGYCFSDGIGKISLSFAKQV-----AQKCG--------------------- 565
Query: 461 ARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQT 520
+ P Q+R Y G KG + +++ + + +R SM+K ++ +
Sbjct: 566 ------LHQTPSAFQIR--YGG--YKGVIAVDRN-SFRKLSLRSSMLKFESQNRM----- 609
Query: 521 FNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKV 580
L V K S + YL+R +++LLS GV + F +L + + +N++ AL V
Sbjct: 610 ---LNVTKWS-ESTPCYLNREIVSLLSTLGVEDENFEALLNEQMHLLDKMLTNRQAALDV 665
Query: 581 SFNYGGMDYDFTSARMILSGISLD-EPYLQHRLSILMKEEKKSLQA-GKLPVTESYYLMG 638
+ GG+D A+M+L G + EPYL L + + ++ ++ V ++ L+G
Sbjct: 666 LESMGGIDNKNILAKMLLQGYEPNVEPYLSMMLQAYRESQLSDIRTRCRIFVPKARVLIG 725
Query: 639 TVDPTGILKSNEVCI-------------------ILKDGQVSWEKVLVYRNPGLHFGDIH 679
+D TGIL +V + + V KV+V +NP LH GDI
Sbjct: 726 CLDETGILNYGQVYVRVTMTKAEHKCRNQSFFQKVDDTTSVVIGKVIVTKNPCLHPGDIR 785
Query: 680 VLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKES 739
VL A Y ELE+ I FP G R +E +GGD DGD +F+ + L+ ++
Sbjct: 786 VLDAVYEVELEEKGLVD--CILFPQKGERPHPNECSGGDLDGDQFFICWDEGLIP--SQT 841
Query: 740 ERWMSTSKNLSANKRLI--DFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFL 797
E M + S R++ D +LEE++ +N D + L
Sbjct: 842 EAPMDYT---SRRPRIMDHDVTLEEIQKFFVDYMIN-------------DTLGVISTAHL 885
Query: 798 TLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVS 857
D E+ A + L L ++ A+D K+G E+P LK ++FP +M R +
Sbjct: 886 VHADREPEK--ARSKKCLELATLHSMAVDF-AKTGAPAEMPRVLKPKEFPDFMERVDKPM 942
Query: 858 FESTSVLGTIYNTVKSYEAVDRSVTEIW 885
+ S LG +Y + ++S + +W
Sbjct: 943 YISNGALGKLYRATIASRVNEKS-SFVW 969
>gi|297805194|ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
gi|297316317|gb|EFH46740.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
Length = 1097
Score = 111 bits (278), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 194/846 (22%), Positives = 350/846 (41%), Gaps = 160/846 (18%)
Query: 194 FESEVWEKLGRKNISQEDR---RMSLKWDSGKTHMYHCHISTKGNCTFKGPYLN---QTR 247
+E W + K +S + + ++ D G +MY + T F GP +N +
Sbjct: 324 YEPARWLRKQYKELSSKGKLPLSPTISLDDGLVYMYRVQV-TPARVYFSGPEVNVSNRVL 382
Query: 248 THLQRELGDDNILLVKF-DEELGGHRS--------SNNWNDSYSKYNEIAREGILVGLRC 298
H + + +N L V F DE+L RS + Y + + R+GI++G +
Sbjct: 383 RHYSKYI--NNFLRVSFVDEDLEKVRSMDLSPRSSTQRRTKLYDRIYSVLRDGIVIGDKK 440
Query: 299 YHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYM--FMH 356
+ F F S+S ++ E+SA++ + I + H +M F H
Sbjct: 441 FEFLAF------------SSSQLR------ENSAWM---FAPIDGLTSAHIRAWMGDFDH 479
Query: 357 VRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTD 416
+R +VA Y +RL S + + +N+ E E D + + G + +D
Sbjct: 480 IR---NVAKYAARLGQSFSSSRET------LNVRSDEIEVIPDVE---IISLGTRYVFSD 527
Query: 417 GTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQV 476
G G IS + A R + +K FS P Q+
Sbjct: 528 GIGKISAEFA-------------------RRVAKKCGLTEFS------------PSAFQI 556
Query: 477 RLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSN-QPRK 535
R Y G KG + ++ + + +R SM K +++ L+V+ S QP
Sbjct: 557 R--YGG--YKGVVAVDPN-SSKKLSLRKSMSKFESEN--------TKLDVLAWSKYQP-- 601
Query: 536 TYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALK-VSFNYGGMDYDFTSA 594
Y++R LI LLS G+ + F R +D + ++ A + + G + + A
Sbjct: 602 CYMNRQLITLLSTLGIKDSVFEKKQREVVDRLDAILTDPLEAHEALGLMAPGENTNILKA 661
Query: 595 RMILSGISLD-EPYLQHRLSILMKEEKKSLQA-GKLPVTESYYLMGTVDPTGILKSNEVC 652
+IL G D EP+L L + L+ ++ ++ +MG +D T L+ +V
Sbjct: 662 -LILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCLDETRTLEYGQVV 720
Query: 653 IILKDGQVSWEK------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNG 706
+ D + V+V +NP LH GD+ VL+A V L V + FP G
Sbjct: 721 VQYSDPMRPGRRFIITGPVVVAKNPCLHPGDVRVLEAVNVPALNHMVD----CVVFPQKG 776
Query: 707 PRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESE 766
R +E +G D DGD+YFV + EL+ + SE T + A D ++EE+E
Sbjct: 777 LRPHPNECSGSDLDGDIYFVCWDQELIPP-RTSEPMDYTPE--PAQILDHDVTIEEVEEY 833
Query: 767 LFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALD 826
+N ++ + A+ A D+ E A + + L + A+D
Sbjct: 834 FANYIVN------DSLGIIANAHTAFADK---------EPLKAFSDPCIELARKFSVAVD 878
Query: 827 APKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVK------------SY 874
PK +G+ E+P+ L V+++P +M + + ++ES +V+G ++ VK +
Sbjct: 879 FPK-TGVAAEIPQHLHVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTL 937
Query: 875 EAVDRSVTEIWKLPCFDDGVPEACMTKWKGYYDQYRWEMKEAIDKCTVEREEAAELV--- 931
+ +S + ++ F++ V EA +K YD +++ +D ++ E AE++
Sbjct: 938 DVALKSYDKDMEVDGFEEYVDEAF--HYKANYD---FKLGNLMDYYGIKTE--AEILSGG 990
Query: 932 IEKYKQILYGAAEFEQSTRTLEEIYNEALAIYNITYD-----LAASRRQVSYCSFAWRVA 986
I + + + E R + + E L+++N T + A++ V+Y S W +
Sbjct: 991 IMRMSKSFTKRRDAESIGRAVRALRKETLSLFNATEEENESAKASAWYHVTYHSSYWGLY 1050
Query: 987 GSALRK 992
L +
Sbjct: 1051 NEGLNR 1056
>gi|303313157|ref|XP_003066590.1| RNA-directed RNA polymerase, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240106252|gb|EER24445.1| RNA-directed RNA polymerase, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 1445
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 158/657 (24%), Positives = 248/657 (37%), Gaps = 144/657 (21%)
Query: 257 DNILLVKF-DEELGGH---RSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEK 312
D L V+F DE+ G +N ++ +++ GI +G R Y F F +
Sbjct: 524 DRFLRVRFTDEKFEGRIQPSHNNTMDEVFTRVKRTMMNGITLGDRHYEFLAFGN------ 577
Query: 313 KKDPSTSPVKCYFVRMESSAFIDMGYQYI--LSGKTVHEARYMFMHVRTVSSVANYMSRL 370
S F + G + L T R H + +A + +RL
Sbjct: 578 ------------------SQFREHGAYFFASLPHLTAANIRAWMGHFSDIKEIARHAARL 619
Query: 371 SLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCP 430
S T V + I IED + ++G +DG G IS LA
Sbjct: 620 GQCFSTTRA--VTGCPVQIREIED----------IQRNGYTF--SDGVGRISRFLAQMVM 665
Query: 431 T-YVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTL 489
T + K C GEPP + Q RL KG L
Sbjct: 666 TEFKIKTPC-----------------------------GEPPSVFQFRL----GGCKGIL 692
Query: 490 LLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYG 549
++ + Q + IR S K A N LEV++ S+ + L+R LI +LS
Sbjct: 693 TVSPEAQRQQVHIRKSQYKFPA--------IHNGLEVIRHSHFCMAS-LNRQLIVVLSSL 743
Query: 550 GVPEIFFLDILRNALDDARGVFSNKRNALKVSFNY-GGMDYDFTSARMILSGI-SLDEPY 607
VP+ FL+ LR L + +++ A+ + + Y A MI G S EP+
Sbjct: 744 EVPDEVFLEKLRMMLGNLELAMTSETQAIHLLYKYIDPNQMTLVLAEMIQDGFQSSKEPF 803
Query: 608 LQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKS------------------ 648
+ L + + K L + K+ + E L G +D TG LK
Sbjct: 804 VTSLLELWRAWQIKYLKEKAKIIIEEGACLFGCLDETGTLKGFFHDNIPSKDASYEERLA 863
Query: 649 --NEVCIIL----KDG--QVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAI 700
E+ + + DG ++ ++ RNP LH GDI V+KA L + I
Sbjct: 864 CLPEIFVQISRANNDGKYEIIEGPCIIARNPSLHPGDIRVVKAVNAPALHHL----RDVI 919
Query: 701 FFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKH--FKESERWMSTSKNLSANKRLIDF 758
FP G R + +GGD DGD Y V + +LL FK+ + + K L ++ D
Sbjct: 920 VFPQTGDRDIPSMCSGGDLDGDDYLVIWDQDLLPKDWFKQPMNYAPSVKALRLSR---DV 976
Query: 759 SLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLI 818
++ ++ S N R LA W + EK +RL
Sbjct: 977 TVNDITSFFVTYMKNDRLAQIAHSHLA---WADYL------------EKGVNDSKCIRLA 1021
Query: 819 NIYYDALDAPKKSGIKVEVPEDLKVEKFPCYM---RRDESVSFESTSVLGTIYNTVK 872
++ A+D K+GI ++ +DL K+P +M + + + S +LG +Y+ V+
Sbjct: 1022 ELHSAAVDY-NKTGIPAKMTKDLAPRKWPHFMEKKHKPKDAQYISQKILGKLYDIVE 1077
>gi|251765121|sp|Q0DXS3.2|RDR1_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 1; Short=OsRDR1
Length = 740
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 166/731 (22%), Positives = 292/731 (39%), Gaps = 153/731 (20%)
Query: 238 FKGPYLNQTRTHLQRELGD-DNILLVKF-DEELGGHRSSN-----------NWNDSYSKY 284
F GP +N + ++ D +N L + F DE+ R+++ N Y +
Sbjct: 11 FYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASGHDANRTALYKRV 70
Query: 285 NEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSG 344
+ +GI +G + + F F S+S ++ ++SA++ Q G
Sbjct: 71 LSVLSDGITIGGKNFEFLAF------------SSSQLR------DNSAWMFASRQ----G 108
Query: 345 KTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNV 404
+ R R + +VA Y +RL S + + + + +E I D
Sbjct: 109 LAASDIRTWMGDFRNIRNVAKYAARLGQSFSSSTE-TLKVQKYEVEEISD---------- 157
Query: 405 VYKDGEALIHTDGTGFIS----EDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDV 460
K+G + +DG G IS ++A+KC N
Sbjct: 158 -IKNGTQHVFSDGIGKISSAFANEVAMKC--------------------------NLKRF 190
Query: 461 ARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQT 520
A P Q+R Y G KG + ++ + +R SM+K ++D D
Sbjct: 191 A---------PSAFQIR--YGG--YKGVVAVDPT-SRWKLSLRKSMLKFQSDNITVDVLA 236
Query: 521 FNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKV 580
++ QP +L+R LI LLS GV + F A++ + ++ + A++
Sbjct: 237 YSKY-------QP--GFLNRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEA 287
Query: 581 SFNYGGMDYDFTSARMILSGISLD-EPYLQHRLSILMKEEKKSLQA-GKLPVTESYYLMG 638
+ ++L G D EPYL L + L+ ++ + + +MG
Sbjct: 288 IELMPMGEITNAVKELLLCGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMG 347
Query: 639 TVDPTGILKSNEVCIILKDGQVSWE------KVLVYRNPGLHFGDIHVLKATYVKELEDF 692
+D T LK +V I G + KV++ +NP LH GDI +L A V L
Sbjct: 348 CLDETRTLKYGQVFIRATSGVNDNDRFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHM 407
Query: 693 VGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSAN 752
+ FP GPR +E +G D DGD+YFVS +P L+ R ++ A
Sbjct: 408 FN----CVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPSLI-----PPRMVTPMDYTPAP 458
Query: 753 KRLI--DFSLEELESELFKLFLNTRF-CPSNAKSLAADCWQAVMDRFLTLGDESAEEKAA 809
+ D ++EE+E +N +NA + AD E+ A
Sbjct: 459 TETLDHDVTIEEVEEYFTNYIVNESLGMIANAHVVFAD----------------KEDLKA 502
Query: 810 MKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYN 869
+ L ++ A+D P K+G+ +P +L V+++P +M + + V++ES V+G +Y
Sbjct: 503 ESSPCIELAKLFSIAVDFP-KTGVPALIPPELHVKEYPDFMEKLDKVTYESKGVIGKLYR 561
Query: 870 TVKSY---------EAVDRSVTEIWKLPCFDDGVPEACMTKWKGYYDQYRWEMKEAIDKC 920
+K + E RS + ++D + EA K D+Y +++ +D
Sbjct: 562 EIKKHTPHIKHFTREVARRSYDTDMIVDGYEDYITEAMALK-----DEYDFKLGNLMDHY 616
Query: 921 TVEREEAAELV 931
++ E AE++
Sbjct: 617 GIKSE--AEII 625
>gi|326493668|dbj|BAJ85295.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1127
Score = 111 bits (277), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 143/572 (25%), Positives = 242/572 (42%), Gaps = 114/572 (19%)
Query: 351 RYM--FMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKD 408
R+M F +R+VS A M +L +T+ D ++E I D V D
Sbjct: 495 RWMGNFEEIRSVSKCAARMGQLFSSSRQTL----DILPRDVEEIPDIE--------VTTD 542
Query: 409 GEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYG 468
G I +DG G ISE A KE+ R Y
Sbjct: 543 GTKYIFSDGIGKISERFA------------------------KEM------ACRIGLDYT 572
Query: 469 EPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVK 528
PP Q+R Y G KG + ++ + + +RPSM K + S + FN +
Sbjct: 573 NPPSAFQIR--YGG--YKGVVAVDPD-SFRNLSLRPSMKKFE-----SKSRMFN----IT 618
Query: 529 TSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMD 588
++++ + Y++R +I+LLS G+ + F + ++ + + + +N+ AL V G +
Sbjct: 619 STSKSQPCYMNREIISLLSTLGIRDEIFELMQQHDMRELDEMLTNREAALSVLGKIGSAE 678
Query: 589 YDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAG-----KLPVTESYYLMGTVDPT 643
T+++++L G EP L+ L +++K + + K+ V + L+G +D T
Sbjct: 679 TK-TASKILLQGY---EPSLEPYLLMILKAHQDNRLTDIRTRCKIHVPKGRVLIGCLDET 734
Query: 644 GILKSNEVCI-ILKDGQ--------------------VSWEKVLVYRNPGLHFGDIHVLK 682
G L+ +V I I K+ + V KV V +NP LH GDI VL+
Sbjct: 735 GELEYGQVYIRITKNSKEQKDNCQPYFSEDNGKDKTAVVVGKVAVSKNPCLHPGDIRVLE 794
Query: 683 ATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERW 742
A Y L + + FP G R +E +GGD DGD+YF++ + +L+ E+
Sbjct: 795 AVYDHGL--YSKNLVDCVVFPQRGERPHPNECSGGDLDGDLYFITWDEKLI-----PEKV 847
Query: 743 MSTSKNLSANKRLID--FSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLG 800
S +A R++D +LEE++ +N D A+ L
Sbjct: 848 DSPMDYTAARPRIMDHVVTLEEIQKYFVDYMIN-------------DSLGAISTAHLVHA 894
Query: 801 DESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFES 860
D + A L+L ++ A+D KSG E+P L+ +++P +M R + ++ S
Sbjct: 895 DRHPMK--ARSPECLQLAALHSMAVDF-AKSGAPAEMPRSLRPKEYPDFMERWDKPTYIS 951
Query: 861 TSVLGTIYNTVKS-YEAVDRSVTEIWKLPCFD 891
LG +Y S ++ + +P FD
Sbjct: 952 NGPLGKLYRAAASRMQSAPAPSSSAQPIPAFD 983
>gi|350631624|gb|EHA19995.1| hypothetical protein ASPNIDRAFT_179412 [Aspergillus niger ATCC 1015]
Length = 1201
Score = 110 bits (276), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 164/705 (23%), Positives = 275/705 (39%), Gaps = 152/705 (21%)
Query: 221 GKTHMYHCHIS----TKGNCTFKGPYLNQTRTHLQRELGD-DNILLVKF-DEELGGH--- 271
K Y CH+ T + P ++ + ++R + D L V+F DE+L G
Sbjct: 447 AKIPPYCCHMRSATITPSTVYYNLPSVDISNRIIRRYMEHADRFLRVRFTDEKLYGRINA 506
Query: 272 RSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESS 331
RS N+ ++ +++ GI++G R Y F F + S
Sbjct: 507 RSDNSNDEIFTRIKRALANGIVIGDRRYEFLAFGN------------------------S 542
Query: 332 AFIDMGYQYI--LSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINI 389
F + G + L T R H + +VA Y +RL S T V + I
Sbjct: 543 QFREHGAYFFAPLPDLTAANIRAWMGHFSDIRNVAKYAARLGQCFSTTRA--VAGCPVQI 600
Query: 390 ERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSID 449
I D V ++G +DG G IS LA T +
Sbjct: 601 RNIPD----------VERNGYTF--SDGVGKISRFLAQMAMTEL---------------- 632
Query: 450 RKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKV 509
+ ++ GEPP Q RL KG L ++ PQ I IR S K
Sbjct: 633 ------------KIKTPTGEPPSAFQFRL----GGCKGMLAVSSDAQPQEIHIRESQNKF 676
Query: 510 KADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARG 569
N LE+++ S T L+R LI ++S GVP+ F L++ L
Sbjct: 677 PT--------VHNGLEIIRWSQFSMAT-LNRQLILVMSTLGVPDEVFHAKLKSMLRALDE 727
Query: 570 VFSNKRNALKVSFNYGGMDYD-FTSARMILSGISLD-EPYLQHRLSILMKEEKKSL-QAG 626
+ A++V Y + T ++M+ G EP+L L++ K L +
Sbjct: 728 AMESDSRAIEVLKKYVDPNQTTLTVSQMVSDGFRRSKEPFLTSILALWRTWHIKYLKEKA 787
Query: 627 KLPVTESYYLMGTVDPTGILKS--------------------NEVCIILKDGQVS----- 661
K+ + + L+G +D TGILK E+ + + + S
Sbjct: 788 KIVIDKGTNLLGVMDETGILKGYFYDKIPKKDASLEQKLAALPEIFLQIPRSEASEDGAT 847
Query: 662 WEKV----LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGG 717
+E + ++ RNP LH GDI V++A V EL + + P G R +A +GG
Sbjct: 848 YEVIEGLCILARNPSLHPGDIRVVRAVNVPELHSL----RDVVVLPQTGDRDIASMCSGG 903
Query: 718 DFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRL---IDFSLEELESELFKLFLNT 774
D DGD Y + + +L+ + W ++NK D +++E+ S F +++
Sbjct: 904 DLDGDDYLIIWDQDLIH-----KDWFLDPMRYTSNKAQDLDHDVTVDEVTS-FFVMYMKN 957
Query: 775 RFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIK 834
P+ A + A W + E +E +RL ++ DA+D K+G
Sbjct: 958 DSLPTIAHAHVA--WADQL------------EDGVNEEKCIRLAQLHSDAVDY-NKTGRP 1002
Query: 835 VEVPEDLKVEKFPCYMRRDES--VSFESTSVLGTIYNTVKSYEAV 877
+ +L+ ++P +M + + + + S +LG +Y+ V+ + V
Sbjct: 1003 AIMTRNLQPRRWPHFMEKPKPKDLIYHSEKILGQLYDAVERVDFV 1047
>gi|452837097|gb|EME39040.1| hypothetical protein DOTSEDRAFT_110589, partial [Dothistroma
septosporum NZE10]
Length = 1155
Score = 110 bits (276), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 181/710 (25%), Positives = 285/710 (40%), Gaps = 158/710 (22%)
Query: 232 TKGNCTFKGPYLNQT-RTHLQRELGDDNILLVKFDEELGGHRSSNNWNDSYSK---YNEI 287
T F P L + R Q + D L VKF +EL H+ D +S+ ++ I
Sbjct: 413 TPSTLHFATPVLETSNRVVRQYQQYQDRFLRVKFRDEL--HKGKIFPQDDHSESEVFSRI 470
Query: 288 AR---EGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSG 344
+R G+ +G R Y F F SS F + G + S
Sbjct: 471 SRAMTHGVKIGDRIYEFLAFG------------------------SSQFREHGAYFFAST 506
Query: 345 KTVHEA---RYM--FMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRD 399
+ A ++M F H++ V A Y +RL S T + +NIE I D
Sbjct: 507 AALTAADIRKWMGNFTHIKVV---AKYCARLGQCFSTTRSIP---HAVNIETISD----- 555
Query: 400 KDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSD 459
+ ++G TDG+G IS LA + + Y ++DD
Sbjct: 556 -----IERNGHCF--TDGSGKISPFLA-RLIAHHYGLPNSDDDH---------------- 591
Query: 460 VARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQ 519
P Q RL KG L ++ L TIQIRPS K A +
Sbjct: 592 -----------PSAFQFRL----AGCKGVLSVDPALRGLTIQIRPSQQKFAA-------E 629
Query: 520 TFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNAL- 578
F LE+ + S Q YL+ +I +LS GVP+ F+ +R L D ++ AL
Sbjct: 630 AFG-LEICRIS-QYSAAYLNMQIILVLSALGVPDEVFIARVRTMLKDFDEAMKSEDKALI 687
Query: 579 --KVSFNYGGMDYDFTSARMILSG-ISLDEPYLQHRLSILMKEEKKSL-QAGKLPVTESY 634
+ + +Y M T A MI+ G + +P+ L + K L + ++ V E +
Sbjct: 688 LLQKNIDYNQMT--LTLASMIMDGFMETKDPFTTTCLRLWRAWSLKYLKEKARVLVEEGF 745
Query: 635 YLMGTVDPTGILK-----SNEVCIILKDGQV-----------SWEKVLVY-------RNP 671
+ + + D TGIL+ S V + KDG + + K +V RNP
Sbjct: 746 FGIASPDETGILRGYSDDSPSVDEVQKDGDLPEIFLQIPDPDTPGKYIVLLGVCALARNP 805
Query: 672 GLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPE 731
LH GD+ V++A V EL K + P G R LA+ +GGD DGD + V + +
Sbjct: 806 SLHPGDVRVVRAVDVPELHH----KKNEVILPITGDRPLANMCSGGDLDGDDFMVIWDKD 861
Query: 732 LLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQA 791
L+ + E TS + ++ ++ +++ + F+N + A+ A + A
Sbjct: 862 LIPPERNHEPMDYTSPTPATSEGVVTV------ADMSRFFVNYIKNDNLARIATAHRYWA 915
Query: 792 VMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMR 851
++ L L N++ A+D K+G+ +P DLKV+ +P +
Sbjct: 916 -----------DWQDDGVKDPKCLALANLHSMAVDY-VKTGVPAYMPADLKVKMWPHWSE 963
Query: 852 ---RDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCFDDGVPEAC 898
+ + + S VLG +Y+ VK SV W +P FDD + AC
Sbjct: 964 PKGKSKRKVYTSKKVLGQLYDEVKR-----ESVVAAWDMP-FDDRILSAC 1007
>gi|320036523|gb|EFW18462.1| RNA-directed RNA polymerase Rdp1 [Coccidioides posadasii str.
Silveira]
Length = 1444
Score = 110 bits (275), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 158/657 (24%), Positives = 247/657 (37%), Gaps = 144/657 (21%)
Query: 257 DNILLVKF-DEELGGH---RSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEK 312
D L V+F DE+ G +N ++ +++ GI +G R Y F F +
Sbjct: 523 DRFLRVRFTDEKFEGRIQPSHNNTMDEVFTRVKRTMMNGITLGDRHYEFLAFGN------ 576
Query: 313 KKDPSTSPVKCYFVRMESSAFIDMGYQYI--LSGKTVHEARYMFMHVRTVSSVANYMSRL 370
S F + G + L T R H + +A + +RL
Sbjct: 577 ------------------SQFREHGAYFFASLPHLTAANIRAWMGHFSDIKEIARHAARL 618
Query: 371 SLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCP 430
S T V + I IED + ++G +DG G IS LA
Sbjct: 619 GQCFSTTRA--VTGCPVQIREIED----------IQRNGYTF--SDGVGRISRFLAQMVM 664
Query: 431 T-YVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTL 489
T + K C GEPP + Q RL KG L
Sbjct: 665 TEFKIKTPC-----------------------------GEPPSVFQFRL----GGCKGIL 691
Query: 490 LLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYG 549
++ + Q + IR S K A N LEV++ S+ + L+R LI +LS
Sbjct: 692 TVSPEAQRQQVHIRKSQYKFPA--------IHNGLEVIRHSHFCMAS-LNRQLIVVLSSL 742
Query: 550 GVPEIFFLDILRNALDDARGVFSNKRNALKVSFNY-GGMDYDFTSARMILSGI-SLDEPY 607
VP+ FL+ LR L + +++ A+ + Y A MI G S EP+
Sbjct: 743 EVPDEVFLEKLRMMLGNLELAMTSETQAIHLLHKYIDPNQMTLVLAEMIQDGFQSSKEPF 802
Query: 608 LQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKS------------------ 648
+ L + + K L + K+ + E L G +D TG LK
Sbjct: 803 VTSLLELWRAWQIKYLKEKAKIIIEEGACLFGCLDETGTLKGFFHDNIPSKDASYEERLA 862
Query: 649 --NEVCIIL----KDG--QVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAI 700
E+ + + DG ++ ++ RNP LH GDI V+KA L + I
Sbjct: 863 CLPEIFVQISRANNDGKYEIIEGPCIIARNPSLHPGDIRVVKAVNAPALHHL----RDVI 918
Query: 701 FFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKH--FKESERWMSTSKNLSANKRLIDF 758
FP G R + +GGD DGD Y V + +LL FK+ + + K L ++ D
Sbjct: 919 VFPQTGDRDIPSMCSGGDLDGDDYLVIWDQDLLPKDWFKQPMNYAPSVKALRLSR---DV 975
Query: 759 SLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLI 818
++ ++ S N R LA W + EK +RL
Sbjct: 976 TVNDITSFFVTYMKNDRLAQIAHSHLA---WADYL------------EKGVNDSKCIRLA 1020
Query: 819 NIYYDALDAPKKSGIKVEVPEDLKVEKFPCYM---RRDESVSFESTSVLGTIYNTVK 872
++ A+D K+GI ++ +DL K+P +M + + + S +LG +Y+ V+
Sbjct: 1021 ELHSAAVDY-NKTGIPAKMTKDLAPRKWPHFMEKKHKPKDAQYISQKILGKLYDIVE 1076
>gi|378728086|gb|EHY54545.1| RNA-directed RNA polymerase [Exophiala dermatitidis NIH/UT8656]
Length = 1461
Score = 110 bits (275), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 148/602 (24%), Positives = 243/602 (40%), Gaps = 108/602 (17%)
Query: 468 GEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVV 527
G+ P Q RL KG L L+ LP I+IRPS K +++ D LE++
Sbjct: 643 GKVPSAYQFRL----GGCKGVLALDPLLPGVDIKIRPSQYKFQSESD--------ELEII 690
Query: 528 KTSN--QPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYG 585
+ S QP +L+R LI +LS GVP+ FL + + + AL+ +
Sbjct: 691 RVSEFWQP---FLNRQLILVLSDLGVPDEVFLQKQEDCIKALDRAMVDDTAALRALRD-- 745
Query: 586 GMDYDFTS---ARMILSGI-SLDEPYLQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTV 640
+D + T+ A MI G +E ++ L + K L + K+PV + +++G V
Sbjct: 746 NVDPNLTTLSIAAMIEDGFRQSNEIFVTSLLRLYRAWTLKYLKEKAKIPVPQGAFVLGVV 805
Query: 641 DPTGILKSNE-----------------VCIILKDGQVSWEKV-----LVYRNPGLHFGDI 678
D T L+ +E + + D ++ ++ RNP LH GDI
Sbjct: 806 DETNKLRGHEPFVSPGSEPPTLQDLPQIFMQYTDQHTGQRRIVEGVCIIARNPSLHRGDI 865
Query: 679 HVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKE 738
V+ A + L + P G R L +GGD DGD Y V +P+L+
Sbjct: 866 RVVHAVDIPALHHLCDV----VVMPIQGERDLPSMCSGGDLDGDDYVVIWDPDLI---PP 918
Query: 739 SERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLT 798
E W + +A K + +E+ ++ F FC + D + L
Sbjct: 919 QEEWFVEPFSYAAPKPV---GKDEITTDDIINF----FC----DYMQNDFLGRIAHAHLA 967
Query: 799 LGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSF 858
D E + L L+N++ A+D P K+G+ E+P +L+ K+P +M + + +
Sbjct: 968 AADYLDE--GIRSDVCLSLVNLHSKAVDYP-KTGVPAEMPRELERNKWPHFMEKRRAPQY 1024
Query: 859 ESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCFDDGV------PEACMTKWKGYYDQYRWE 912
+S +LG +Y+ AV+R E FD + PE+ + + + Y
Sbjct: 1025 KSHKILGQLYD------AVERVAFEPNWEGSFDQRILKHQLPPESVVEEVRRLKKSYDEG 1078
Query: 913 MKE--AIDKCTVEREEAAELVIEKYKQI--LYGAAEFEQSTRTLEEIYNE---------- 958
M+ A + E E + V+ K E Q RTL+E Y +
Sbjct: 1079 MRRIMAQHQINTEFEVWSTFVLHHSKAARDFKFHEEIGQHARTLKEQYYDVLVEHAGGRD 1138
Query: 959 -------ALAIYNITYDLAASRRQVSYCSFAWRVAGSALRKFYARRQGDRSMLCSASVLR 1011
A+A Y+ITYD RQ V GS + + ++ G R+ +
Sbjct: 1139 FEKLMPMAVAAYHITYD---EFRQAQEA-----VDGSVIDEVFSDAAGSRASSAGGPQAK 1190
Query: 1012 EI 1013
E+
Sbjct: 1191 EM 1192
>gi|451852221|gb|EMD65516.1| hypothetical protein COCSADRAFT_354694 [Cochliobolus sativus ND90Pr]
Length = 1365
Score = 110 bits (275), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 155/659 (23%), Positives = 253/659 (38%), Gaps = 142/659 (21%)
Query: 253 ELGDDNILLVKFDEELGGHRSSNNWNDS----YSKYNEIAREGILVGLRCYHFFVFKDGG 308
E D + V+F +E + N N + + + GI+V R Y F F +
Sbjct: 509 EADADRFIRVRFTDEKSEGQLRNQPNGRAEAVFDRVFRAMKNGIVVAGRYYEFLAFGNSQ 568
Query: 309 KEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMS 368
E YF +S S + + F H+RTVS A +
Sbjct: 569 FRENG---------AYFYAPTASK----------SANDIRMSLGEFDHIRTVSKFA---A 606
Query: 369 RLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALK 428
RL S T + V + + +E ++G + TDG G +S LA
Sbjct: 607 RLGQCFSTTRAMGVTVKLVIVPDVE-------------RNG--FVFTDGVGKLSPFLA-- 649
Query: 429 CPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGT 488
+ + L F+D PP L Q RL KG
Sbjct: 650 ----------------QMAAQELGLTNAFTD----------PPSLFQFRL----GGSKGV 679
Query: 489 LLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSY 548
L L+ L + IR S K +A LE++++S+ Y +R +I +LSY
Sbjct: 680 LALDPNLNGNEVHIRRSQYKFRAPH--------TGLEIIRSSSF-ATPYFNRQIILVLSY 730
Query: 549 GGVPEIFFLDILRNALDDARGVFSNKRNAL-KVSFNYGGMDYDFTSARMILSG-ISLDEP 606
GV + FL + ++D +++ AL K+ N T A M+L G + EP
Sbjct: 731 LGVQDAVFLRKQEDMMNDYSSAMTDEIIALQKLRKNIDINQITLTMAAMVLDGFMGSREP 790
Query: 607 YLQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKSN---------------- 649
++ L++ K+L + ++ + +L+G VD TG LK +
Sbjct: 791 FIMSLLALWRACTIKNLKEKARIAIDNGAFLLGCVDETGTLKGHLNDPQSRRDATRDEKL 850
Query: 650 ----EVCIILKDGQVSWEKVLV------YRNPGLHFGDIHVLKATYVKELEDFVGTSKYA 699
E+ + + D + +++ RNP LH GD+ V++A V L K
Sbjct: 851 ATLPEIFLRVSDPESKGHYIIIEGICILARNPSLHPGDVRVVRAVNVPALHHL----KNV 906
Query: 700 IFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFS 759
+ FP G R LA+ +GGD DGD Y V + +L+ N+ +DF+
Sbjct: 907 VVFPQTGDRDLANMCSGGDLDGDDYMVLWDRDLVPEL--------------INEPPMDFT 952
Query: 760 LE---ELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLR 816
E E++ + + ++ F + D + L D EK L
Sbjct: 953 PEKPLEIDGPISAMDMSKFFV----NYIKNDALGPIAHAHLAQAD--FNEKCIGDAICLE 1006
Query: 817 LINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRR---DESVSFESTSVLGTIYNTVK 872
L ++ A+D P KSGI E+ +L+ K+P +M + + S +LG +Y+ VK
Sbjct: 1007 LAELHSRAVDFP-KSGIPAEMKRELRPRKWPHFMEKKYLSPHQIYNSKKILGLLYDEVK 1064
>gi|357164043|ref|XP_003579930.1| PREDICTED: probable RNA-dependent RNA polymerase 2-like [Brachypodium
distachyon]
Length = 1140
Score = 110 bits (275), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 129/496 (26%), Positives = 218/496 (43%), Gaps = 82/496 (16%)
Query: 467 YGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEV 526
+ PP Q+R KG + ++ + + +RPSM K + SD + N
Sbjct: 568 HTNPPSAFQIRF----GGYKGVIAVDPS-SFRNLSLRPSMRKFE-----SDCRMLN---- 613
Query: 527 VKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGG 586
+ + ++ + Y++R +I+LLS G+ + F + ++ + + + +NK AL V G
Sbjct: 614 ITSWSKSQPCYVNREIISLLSTLGIRDEVFELMQQDDMRELDEMLTNKEVALSVLGKIGS 673
Query: 587 MDYDFTSARMILSGIS-LDEPYLQHRLSILMKEEKKSL----QAGKLPVTESYYLMGTVD 641
+ T+A M+L G + EPYL L IL + L K+ V + L+G +D
Sbjct: 674 AETK-TAADMLLQGYEPISEPYL---LMILKAHQDNRLTDIRSKFKIHVPKGRVLLGCLD 729
Query: 642 PTGILKSNEVCI-ILKDGQVSWE------------------KVLVYRNPGLHFGDIHVLK 682
TG LK +V I I K+ + E KV V +NP LH GD+ VL+
Sbjct: 730 ETGKLKYGQVYIRITKNNKEQKENEQPYFSEDDGKTVTLVGKVAVSKNPCLHPGDVRVLE 789
Query: 683 ATY-----VKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFK 737
A Y K+L D + FP G R +E +GGD DGD+YFV+ + +L+
Sbjct: 790 AVYDPGLHAKKLVD-------CVVFPQRGERPHPNECSGGDLDGDLYFVTWDDKLI---- 838
Query: 738 ESERWMSTSKNLSANKRLID--FSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDR 795
E+ + A R++D +LEE++ + L +D A+ +
Sbjct: 839 -PEKADAPMDYTGARPRIMDHVVTLEEIQQHVVNYML-------------SDSLGAISNA 884
Query: 796 FLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDES 855
L D + A L+L ++ A+D K+G E+P L+ +FP +M R +
Sbjct: 885 HLIHADR--DPMKARSPECLQLAALHSMAVDF-AKTGAPAELPRSLRPREFPDFMERWDK 941
Query: 856 VSFESTSVLGTIYN-TVKSYEAVDRSVTEIWKLPCFDD--GVP--EACMTKWKGYYDQYR 910
+ S VLG +Y V E+ +++ P +D VP E + + +YD Y
Sbjct: 942 PMYISNGVLGKLYRAAVSRMESSHALASQVQSSPTYDRELAVPGFEEFLEDAEKHYDLYV 1001
Query: 911 WEMKEAIDKCTVEREE 926
++ ++ E E+
Sbjct: 1002 EKLTTLMNYYGAEHED 1017
>gi|119192036|ref|XP_001246624.1| hypothetical protein CIMG_00395 [Coccidioides immitis RS]
Length = 1492
Score = 110 bits (275), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 158/657 (24%), Positives = 247/657 (37%), Gaps = 144/657 (21%)
Query: 257 DNILLVKF-DEELGGH---RSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEK 312
D L V+F DE+ G +N ++ +++ GI +G R Y F F +
Sbjct: 571 DRFLRVRFTDEKFEGRIQPSHNNTMDEVFTRVKRTMMNGITLGDRHYEFLAFGN------ 624
Query: 313 KKDPSTSPVKCYFVRMESSAFIDMGYQYI--LSGKTVHEARYMFMHVRTVSSVANYMSRL 370
S F + G + L T R H + +A + +RL
Sbjct: 625 ------------------SQFREHGAYFFASLPHLTAANIRAWMGHFSDIKEIARHAARL 666
Query: 371 SLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCP 430
S T V + I IED + ++G +DG G IS LA
Sbjct: 667 GQCFSTTRA--VTGCPVQIREIED----------IQRNGYTF--SDGVGRISRFLAQMVM 712
Query: 431 T-YVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTL 489
T + K C GEPP + Q RL KG L
Sbjct: 713 TEFKIKTPC-----------------------------GEPPSVFQFRL----GGCKGIL 739
Query: 490 LLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYG 549
++ + Q + IR S K A N LEV++ S+ + L+R LI +LS
Sbjct: 740 TVSPEAQRQQVHIRKSQYKFPA--------IHNGLEVIRHSHFCMAS-LNRQLIVVLSSL 790
Query: 550 GVPEIFFLDILRNALDDARGVFSNKRNALKVSFNY-GGMDYDFTSARMILSGI-SLDEPY 607
VP+ FL+ LR L + +++ A+ + Y A MI G S EP+
Sbjct: 791 EVPDEVFLEKLRMMLGNLELAMTSETQAIHLLHKYIDPNQMTLVLAEMIQDGFQSSKEPF 850
Query: 608 LQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKS------------------ 648
+ L + + K L + K+ + E L G +D TG LK
Sbjct: 851 VTSLLELWRAWQIKYLKEKAKIIIEEGACLFGCLDETGTLKGLFHDNIPSKDASYEERLA 910
Query: 649 --NEVCIIL----KDG--QVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAI 700
E+ + + DG ++ ++ RNP LH GDI V+KA L + I
Sbjct: 911 CLPEIFVQISRANNDGKYEIIEGPCIIARNPSLHPGDIRVVKAVNAPALHHL----RDVI 966
Query: 701 FFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKH--FKESERWMSTSKNLSANKRLIDF 758
FP G R + +GGD DGD Y V + +LL FK+ + + K L ++ D
Sbjct: 967 VFPQTGDRDIPSMCSGGDLDGDDYLVIWDQDLLPKDWFKQPMNYAPSVKALRLSR---DV 1023
Query: 759 SLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLI 818
++ ++ S N R LA W + EK +RL
Sbjct: 1024 TVNDITSFFVTYMKNDRLAQIAHSHLA---WADYL------------EKGVNDSKCIRLA 1068
Query: 819 NIYYDALDAPKKSGIKVEVPEDLKVEKFPCYM---RRDESVSFESTSVLGTIYNTVK 872
++ A+D K+GI ++ +DL K+P +M + + + S +LG +Y+ V+
Sbjct: 1069 ELHSAAVDY-NKTGIPAKMTKDLAPRKWPHFMEKKHKPKDAQYISQKILGKLYDIVE 1124
>gi|302786286|ref|XP_002974914.1| hypothetical protein SELMODRAFT_150191 [Selaginella moellendorffii]
gi|300157073|gb|EFJ23699.1| hypothetical protein SELMODRAFT_150191 [Selaginella moellendorffii]
Length = 834
Score = 110 bits (275), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 110/394 (27%), Positives = 184/394 (46%), Gaps = 64/394 (16%)
Query: 500 IQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFF--- 556
+ +RPSM K S+ T + LE KT P +YL+R +I+LLS VP+ F
Sbjct: 329 LSLRPSMSKFP-----SEQTTLDVLE--KTRYIP--SYLNREIISLLSTLEVPDGVFERM 379
Query: 557 ----LDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGIS-LDEPYLQ-- 609
+++L L D+ + + L+V Y G + + M+L+G S + EPY++
Sbjct: 380 QAHQVELLDRMLLDSAATY----DVLRVL--YAGECHKLLVS-MVLAGFSPVTEPYMRSL 432
Query: 610 ---HRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEK-- 664
R + L+ EKKS ++ V + LMG +D +L+ + + + QV+
Sbjct: 433 LQAFRAAQLLSLEKKS----RIFVPKGRLLMGCLDEQRVLRYGQCFVQVSPLQVTARNQA 488
Query: 665 ------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGD 718
V+V +NP LH GD+ VL+A V EL V I FP GPR +E +G D
Sbjct: 489 FVVTGSVVVAKNPCLHPGDVLVLEAVDVPELHHMVD----CIVFPQQGPRPHPNECSGSD 544
Query: 719 FDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCP 778
DGD YFVS + L+ + + + + LEE++ + F+N
Sbjct: 545 LDGDQYFVSWDSALIPPKRHPPMNYEAPPAVELDHSV---RLEEIQ----EFFVNW---- 593
Query: 779 SNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVP 838
+ +D + L L D S + A + L +Y A+D P K+G+ +P
Sbjct: 594 -----ITSDSLGVIAHAHLALSDWS--DLQARDPKCMELARLYSVAVDFP-KTGVPAVMP 645
Query: 839 EDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVK 872
+L+ E++P +M + ++ ST V+G +Y +++
Sbjct: 646 PELRPEQYPDFMEKRNKRTYISTRVIGKLYRSIR 679
>gi|238505489|ref|XP_002383969.1| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus flavus
NRRL3357]
gi|220690083|gb|EED46433.1| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus flavus
NRRL3357]
Length = 1353
Score = 110 bits (275), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 179/743 (24%), Positives = 292/743 (39%), Gaps = 156/743 (20%)
Query: 257 DNILLVKF-DEELGGHRSS---NNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEK 312
D L V+F DE+L G +S + ++ +++ GI++G R Y F F +
Sbjct: 447 DRFLRVRFTDEKLLGRINSTTDSTMDEIFTRIKRALTNGIVIGDRRYEFLAFGN------ 500
Query: 313 KKDPSTSPVKCYFVRMESSAFIDMGYQYI--LSGKTVHEARYMFMHVRTVSSVANYMSRL 370
S F + G + L T R H ++ +VA + +RL
Sbjct: 501 ------------------SQFREHGAYFFAPLPNLTAANIRAWMGHFNSIRNVAKHAARL 542
Query: 371 SLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCP 430
S T + +++ +IED V ++G +DG G IS LA
Sbjct: 543 GQCFSTTRAIAG--CPVDVVKIED----------VERNGYNF--SDGVGRISRFLA---- 584
Query: 431 TYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLL 490
+ EL + ++ GEPP Q RL KG L
Sbjct: 585 ----------------QMSMSEL--------KIKTPTGEPPSAFQFRL----GGCKGMLA 616
Query: 491 LNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGG 550
++ + Q + IR S K A N LE+V+ S T L+R LI +LS G
Sbjct: 617 VSSEAQRQEVHIRKSQFKFAA--------IHNGLEIVRWSQFSMAT-LNRQLIIVLSTLG 667
Query: 551 VPEIFF---LDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLD-EP 606
+P+ F L + LD A LK + M T ++M+L G EP
Sbjct: 668 IPDQVFHAKLHTMLQGLDQALESDPQAIYWLKKYVDPNQMT--LTISQMVLDGFRRSKEP 725
Query: 607 YLQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKS--------NEVCIILKD 657
+L L++ K L + ++ V + L+G +D TG+L+ N+ + K
Sbjct: 726 FLTSVLTLWRAWHLKYLKEKARIAVDQGACLLGCMDETGLLQGYFHDKVPGNDASVEEKT 785
Query: 658 G-------QVSWEKV-----------LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYA 699
QVS + ++ RNP LH GDI V++A V +L +
Sbjct: 786 AALPEIFVQVSRPEADKKSEVIEGVCILARNPSLHPGDIRVVRAVNVPQLRHL----QDV 841
Query: 700 IFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKH--FKESERWMSTSKNLSANKRLID 757
+ P G R +A +GGD DGD Y V + +LL F+E ++ S A D
Sbjct: 842 VVLPQTGDRDIASMCSGGDLDGDDYIVIWDQDLLPKDWFREPMKYTSN----KAQDLDRD 897
Query: 758 FSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRL 817
++ ++ S F ++ F P A + A + FL E +E +RL
Sbjct: 898 VTVNDITS-FFVTYMKNDFLPRIAHAHLA------LADFL--------EDGVNEEKCIRL 942
Query: 818 INIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMR---RDESVSFESTSVLGTIYNTVKSY 874
++ DA+D K+GI + +L+ K+P +M + + + S +LG +Y+ V+
Sbjct: 943 AQLHSDAVDY-NKTGIPAILTRNLEPRKWPHFMEKFNKPKDRIYHSNKILGQLYDAVERI 1001
Query: 875 EAVDRSVTEIWK--LPCFDDGVPEACMTKWKGYYDQYRWEMKEAIDKCTVEREEAAELVI 932
+ V K L C + VP+ +T K QY M+ + + ++ E
Sbjct: 1002 DFVPSLEMPFDKRLLNC-EIEVPDDLLTFAKNLKGQYDDAMRRIMAQHEIKTE------F 1054
Query: 933 EKYKQILYGAAEFEQSTRTLEEI 955
E + + G A + + EEI
Sbjct: 1055 EIWSTFVLGHANTSKDYKFHEEI 1077
>gi|260789117|ref|XP_002589594.1| hypothetical protein BRAFLDRAFT_81564 [Branchiostoma floridae]
gi|229274774|gb|EEN45605.1| hypothetical protein BRAFLDRAFT_81564 [Branchiostoma floridae]
Length = 1867
Score = 110 bits (274), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 117/426 (27%), Positives = 190/426 (44%), Gaps = 51/426 (11%)
Query: 468 GEPPLLMQVRLFYNGTAVKGTLLLNKKLP-PQTIQIRPSMIKVKADRDLSDGQTFNSLEV 526
G P+ ++ Y G KG L + L IQIR SM K +++ +LEV
Sbjct: 567 GVSPVPSAFQIRYAG--CKGVLAQDPTLGNTDRIQIRGSMKKFESEH--------KTLEV 616
Query: 527 VKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALK-VSFNYG 585
+ P L+R I LLS VP++ FL + L+ + A+K +S
Sbjct: 617 TSVTT-PGVLSLNRQAITLLSGLNVPDMEFLKLQERVLNQLAEMLILDEAAVKALSGARV 675
Query: 586 GMDYDFTSARMILSGISLD-EPYLQHRLSILMKEEKKSL---QAGKLPVTESYYLMGTVD 641
GMD + SGISL EP+ + L + + L ++P E +MGT+D
Sbjct: 676 GMDI----RALHDSGISLTTEPFFRSMLLAVYRNRMGELLRRTRIEIPAGEGRIMMGTMD 731
Query: 642 PTGILKSNEVCIILK--------DGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFV 693
TG L+ +V I D V +V V +NP H GD+ A V EL V
Sbjct: 732 ETGKLQYGQVFIQYSREVDKPQADKVVHQGQVTVTKNPCFHPGDMRKFTAVDVPELRHMV 791
Query: 694 GTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANK 753
I FP GPR DE++G D DGDMYFV+ L+ +E+ M + + K
Sbjct: 792 D----CIVFPSRGPRPHPDEMSGSDLDGDMYFVTWREGLILP-RENRPAMDFT---AQPK 843
Query: 754 RLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKEN 813
R++ ++ ES++ + F + SN L A+ D+ E++ +
Sbjct: 844 RVLHRPVQ--ESDMIEFF--AEYIGSNQLGLIANAHLVHADK---------EDQGIFSQK 890
Query: 814 MLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKS 873
+ L ++ DA+DAP K+G E+ DL+ E +P +M + + + S ++G ++ +
Sbjct: 891 CIDLAQLHSDAVDAP-KTGQCPELKGDLRPEVYPDFMMKSDKPQYRSERIIGRLFRKCQE 949
Query: 874 YEAVDR 879
++ ++
Sbjct: 950 LDSANQ 955
>gi|15422180|gb|AAK95829.1| putative RNA-dependent RNA polymerase [Diaporthe ambigua]
Length = 1483
Score = 110 bits (274), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 169/712 (23%), Positives = 291/712 (40%), Gaps = 149/712 (20%)
Query: 210 EDRRMSLKWDSGKTHMYHC----HISTKGNCTFKGPYLNQTRTHLQRELGD--DNILLVK 263
+D ++ W + +T Y + T FK P + T L R+ D D L V+
Sbjct: 533 DDPKILHYWPNARTPPYATLVRRAVITPTAIYFKSPCVELTNRIL-RKYSDLNDRFLRVQ 591
Query: 264 FDEELGGHR-----SSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPST 318
F +E+ + S ++ +++ + + R GI++G R Y F F S
Sbjct: 592 FTDEITSGKIFSSQDSTKDDNLFTRVHRVMRNGIVIGDRHYRFLAF------------SN 639
Query: 319 SPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTM 378
S + E+ AF ++ + +++ E F H+R SV + +R+ + T
Sbjct: 640 SQFR------ENGAFFFCNTDHV-TCESIREWMGDFRHIR---SVGKFAARMGQCFTTTR 689
Query: 379 KLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIH-TDGTGFISEDLALKCPTYVYKEK 437
++ + I+I +I + G++ + G+ + + TDG G IS LA
Sbjct: 690 QV----NGISIPKIR------QIGDIQQQTGDHIWNFTDGVGKISPFLAT---------- 729
Query: 438 CTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPP 497
L AN E + E P Q+R+ KG ++ +PP
Sbjct: 730 ---------------LIAN-------ERNLPETPSCFQIRM----GGCKGVVVTWPDVPP 763
Query: 498 QTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFL 557
+ +RPS K KA +N LE++KTS T L++ +I +L GV + F+
Sbjct: 764 SEVHVRPSQEKFKA--------VYNGLEIIKTSAFSHAT-LNKQVIPVLVALGVDKSVFV 814
Query: 558 DILRNALDDARGVFSNKRNALKV-SFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILM 616
+L + L + ++ A ++ T A M+ + + +EP+L L +
Sbjct: 815 SMLDSELTEYEEALADSMRAGELLRSQVDENQTTLTLAEMVDTFMDSEEPFLWTLLRLWK 874
Query: 617 KEEKKSL-QAGKLPVTESYYLMGTVDPTGILKSN--------------------EVCIIL 655
K L Q + V S + G VD G+L+ + +V +
Sbjct: 875 CWVLKRLKQKFAISVKNSAMVFGVVDEIGVLRGHSQATEGRRDNNIESLPQIFLQVPVEG 934
Query: 656 KDGQ--VSWEKV----LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRS 709
DG+ ++E + +V RNP LH GD+ V++A EL K + FP G R
Sbjct: 935 SDGKSTTNYEVITGLCVVGRNPSLHPGDVRVVEAVDALELRHL----KNVVVFPRTGDRD 990
Query: 710 LADEIAGGDFDGDMYFVSRNPELLK----HFKESERWMSTSKNLSANKRLIDFSLEELES 765
+ +GGD DGD YFV + L+ H S++ L + D ++E++
Sbjct: 991 IPSMCSGGDMDGDDYFVYWDERLIPLEWYHPPLDHDAESSTPGLDKPE---DVTIEDV-- 1045
Query: 766 ELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKEN--MLRLINIYYD 823
TRF A+ + D + R T A++ + +N + L ++
Sbjct: 1046 --------TRFF---AQYMKNDS----LGRIATAHFAQADQLSGGVKNPKCIELAKLHSK 1090
Query: 824 ALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYE 875
A+D KSG + L+ K+P +M R++ S+ S S LG IYN +K E
Sbjct: 1091 AVDY-IKSGKPAVMQRHLQPRKWPHWMEREKKSSYPSVSALGQIYNRIKIEE 1141
>gi|242093792|ref|XP_002437386.1| hypothetical protein SORBIDRAFT_10g025950 [Sorghum bicolor]
gi|241915609|gb|EER88753.1| hypothetical protein SORBIDRAFT_10g025950 [Sorghum bicolor]
Length = 1239
Score = 110 bits (274), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 103/403 (25%), Positives = 187/403 (46%), Gaps = 70/403 (17%)
Query: 500 IQIRPSMIKVKADRDLSDGQTFNSLEVVK-TSNQPRKTYLSRNLIALLSYGGVPEIFFLD 558
+ +RPSM K ++ + LEV+ T QP ++L+R +I LL+ GVP+ F
Sbjct: 698 MSLRPSMRKFESAHSV--------LEVLSWTKFQP--SFLNRQIITLLTSLGVPDAVFWQ 747
Query: 559 ILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGIS-LDEPYLQHRL-SILM 616
+ L + + + S+ A +V N ++ T+ M+ +G + EP+L+ L +I
Sbjct: 748 MQEAMLGNLKRILSDNNVAYEVVTN-SCPEHGSTAGLMLSAGFAPATEPHLRAMLLAICA 806
Query: 617 KEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIIL--------------------- 655
+ + L ++ V + +LMG +D GIL+ + I +
Sbjct: 807 SQMQGLLDKTRIFVPKGRWLMGCLDELGILEQGQCFIQVSTPSLNNCYVNRGSIFPSEYK 866
Query: 656 KDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIA 715
+ ++ V++ +NP LH GD+ +L+A V EL V + FP G R A+E +
Sbjct: 867 NNAEIIVGTVVMAKNPCLHPGDVRILEAVDVPELHHLVD----CLVFPQKGERPHANEAS 922
Query: 716 GGDFDGDMYFVSRNPELLKHFKESERWM----STSKNLS---ANKRLIDFSLEELESELF 768
G D DGD+YFV+ + L+ ++S M + +K L +IDF LE + ++
Sbjct: 923 GSDLDGDIYFVTWDENLVPPGRQSGTPMDYFPAKTKQLPREVHQSDIIDFYLESMVNDNL 982
Query: 769 KLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAP 828
R C NA + AD + AM ++L + A+D+
Sbjct: 983 G-----RIC--NAHVVHAD----------------RSDDGAMDPKCIQLAKLAAIAVDS- 1018
Query: 829 KKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTV 871
K+G V +P L +++P +M + +++S++S +LG +Y ++
Sbjct: 1019 AKTGEIVRMPPSLSPKEYPDFMGKGDAISYKSKKILGRLYRSI 1061
>gi|24935275|gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
Length = 1107
Score = 110 bits (274), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 165/682 (24%), Positives = 282/682 (41%), Gaps = 130/682 (19%)
Query: 215 SLKWDSGKTHMYHCHISTKGNCTFKGPYLN---QTRTHLQRELGDDNILLVKF-DEELGG 270
++ D G +MY + T F GP +N + H + + +N L V F DE+L
Sbjct: 357 TISLDDGLVYMYRVQV-TPARVYFSGPEVNVSNRVLRHYSKYI--NNFLRVSFVDEDLEK 413
Query: 271 HRS--------SNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVK 322
RS + Y + + R+GI++G + + F F S+S ++
Sbjct: 414 VRSMDLSPRSSTQRRTKLYDRIYSVLRDGIVIGDKKFEFLAF------------SSSQLR 461
Query: 323 CYFVRMESSAFIDMGYQYILSGKTVHEARYM--FMHVRTVSSVANYMSRLSLILSKTMKL 380
E+SA++ I + H +M F H+R +VA Y +RL S + +
Sbjct: 462 ------ENSAWMFAPIDRITAA---HIRAWMGDFDHIR---NVAKYAARLGQSFSSSRET 509
Query: 381 EVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTN 440
+N+ E E D + + G + +DG G IS + A
Sbjct: 510 ------LNVRSDEIEVIPDVE---IISLGTRYVFSDGIGKISAEFA-------------- 546
Query: 441 DDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTI 500
R + RK FS P Q+R Y G KG + ++ + +
Sbjct: 547 -----RKVARKCGLTEFS------------PSAFQIR--YGG--YKGVVAVDPN-SSKKL 584
Query: 501 QIRPSMIKVKADRDLSDGQTFNSLEVVKTSN-QPRKTYLSRNLIALLSYGGVPEIFFLDI 559
+R SM K +++ L+V+ S QP Y++R LI LLS GV + F
Sbjct: 585 SLRKSMSKFESEN--------TKLDVLAWSKYQP--CYMNRQLITLLSTLGVTDSVFEKK 634
Query: 560 LRNALDDARGVFSNKRNALK-VSFNYGGMDYDFTSARMILSGISLD-EPYLQHRLSILMK 617
R +D + ++ A + + G + + A +IL G D EP+L L
Sbjct: 635 QREVVDRLDAILTHPLEAHEALGLMAPGENTNILKA-LILCGYKPDAEPFLSMMLQNFRA 693
Query: 618 EEKKSLQA-GKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEK------VLVYRN 670
+ L+ ++ ++ +MG +D T L+ +V + D + V+V +N
Sbjct: 694 SKLLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYSDPMRPGRRFIITGPVVVAKN 753
Query: 671 PGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNP 730
P LH GD+ VL+A V L V + FP G R +E +G D DGD+YFV +
Sbjct: 754 PCLHSGDVRVLQAVNVPALNHMVD----CVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQ 809
Query: 731 ELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQ 790
EL+ + SE T + D ++EE+E +N ++ + A+
Sbjct: 810 ELVPP-RTSEPMDYTPEPTQILDH--DVTIEEVEEYFANYIVN------DSLGIIANAHT 860
Query: 791 AVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYM 850
A D+ E A + + L + A+D PK +G+ +P+ L V+++P +M
Sbjct: 861 AFADK---------EPLKAFSDPCIELAKKFSTAVDFPK-TGVAAVIPQHLYVKEYPDFM 910
Query: 851 RRDESVSFESTSVLGTIYNTVK 872
+ + ++ES +V+G ++ VK
Sbjct: 911 EKPDKPTYESKNVIGKLFREVK 932
>gi|336463319|gb|EGO51559.1| suppressor of ascus dominance [Neurospora tetrasperma FGSC 2508]
gi|350297473|gb|EGZ78450.1| suppressor of ascus dominance [Neurospora tetrasperma FGSC 2509]
Length = 1633
Score = 109 bits (273), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 147/567 (25%), Positives = 235/567 (41%), Gaps = 116/567 (20%)
Query: 354 FMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALI 413
F H++ + A Y +RL S T + I RI P +KDG
Sbjct: 650 FSHIKVI---AKYAARLGQCFSTTRLV----PGIPAPRIITIPDVEKDG---------FC 693
Query: 414 HTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLL 473
TDG G IS LA K D SID PP
Sbjct: 694 FTDGIGKISPLLA----------KIVAHDW---SID-------------------PPPSA 721
Query: 474 MQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQP 533
Q R+ KG L+ + + IR S K A+ FN LEVV+ S
Sbjct: 722 YQFRM----GGCKGVLVTWPDVKGMEVHIRKSQEKFVAE--------FNGLEVVRCSQFS 769
Query: 534 RKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTS 593
T L+R +IA+LS GVP+ F+D++ L D +K+ A + + +D + +
Sbjct: 770 TAT-LNRQIIAVLSSLGVPDQVFVDMMEQQLSDFNAAMEDKQKATAILKTF--IDENHMT 826
Query: 594 ---ARMILSG-ISLDEPYLQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKS 648
A M+ G + EP+++ L + K+L + +L V +S +++G VD TG LK
Sbjct: 827 PIIAEMLAYGFMESQEPFVRTLLQLWRSWSIKTLKEKARLNVEKSAFVLGCVDETGTLKG 886
Query: 649 N----------------EVCIILKDG-----QVSWEKVLVYRNPGLHFGDIHVLKATYVK 687
+ ++ + + D +V +V RNP LH GDI V++A V
Sbjct: 887 HMKVTEDWKDVPSEKLPQIFLQIPDDVNGGYRVITGTCVVGRNPSLHPGDIRVVEAVDVP 946
Query: 688 ELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSK 747
L + + FP G R + +GGD DGD +FV +P L+ KE TS+
Sbjct: 947 ALRHL----RDVVVFPLAGDRDVPSMCSGGDLDGDDFFVIWDPLLIP--KERSHPPMTSE 1000
Query: 748 NLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEK 807
++ + + ++ L + F L++ P A + L AE +
Sbjct: 1001 PIAGKELATEPTVNNLIT-FFVLYMKYNNLPLIAHA--------------HLATADAEVE 1045
Query: 808 AAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTI 867
L L +++ A+D K+G+ E P L + +P +M ++ ++ S + LG +
Sbjct: 1046 GVKSPKCLELASLHSMAVDY-VKTGVAAEFPRRLDPKTWPHFMEKNRH-TYHSVTALGKL 1103
Query: 868 YNTVKSYEAVDRSVTEIWKLPCFDDGV 894
Y+ VK E D + E ++LP FD+ +
Sbjct: 1104 YDMVKR-ETFD--MKENYQLP-FDNRI 1126
>gi|145245289|ref|XP_001394912.1| RNA-directed RNA polymerase (Sad-1) [Aspergillus niger CBS 513.88]
gi|134079610|emb|CAK40827.1| unnamed protein product [Aspergillus niger]
Length = 1382
Score = 109 bits (273), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 163/705 (23%), Positives = 275/705 (39%), Gaps = 152/705 (21%)
Query: 221 GKTHMYHCHIS----TKGNCTFKGPYLNQTRTHLQRELGD-DNILLVKF-DEELGGH--- 271
K Y CH+ T + P ++ + ++R + D L V+F DE+L G
Sbjct: 456 AKIPPYCCHMRSATITPSTVYYNLPSVDISNRIIRRYMEHADRFLRVRFTDEKLYGRINA 515
Query: 272 RSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESS 331
RS N+ ++ +++ GI++G R Y F F + S
Sbjct: 516 RSDNSNDEIFTRIKRALANGIVIGDRRYEFLAFGN------------------------S 551
Query: 332 AFIDMGYQYI--LSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINI 389
F + G + L T R H + +VA Y +RL S T V + I
Sbjct: 552 QFREHGAYFFAPLPDLTAANIRAWMGHFSDIRNVAKYAARLGQCFSTTRA--VAGCPVQI 609
Query: 390 ERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSID 449
I D V ++G +DG G IS LA T +
Sbjct: 610 RNIPD----------VERNGYTF--SDGVGKISRFLAQMAMTEL---------------- 641
Query: 450 RKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKV 509
+ ++ GEPP Q RL KG L ++ PQ I IR S K
Sbjct: 642 ------------KIKTPTGEPPSAFQFRL----GGCKGMLAVSSDAQPQEIHIRESQNKF 685
Query: 510 KADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARG 569
N L++++ S T L+R LI ++S GVP+ F L++ L
Sbjct: 686 PT--------VHNGLDIIRWSQFSMAT-LNRQLILVMSTLGVPDEVFHAKLKSMLRALDE 736
Query: 570 VFSNKRNALKVSFNYGGMDYD-FTSARMILSGISLD-EPYLQHRLSILMKEEKKSL-QAG 626
+ A++V Y + T ++M+ G EP+L L++ K L +
Sbjct: 737 AMESDSRAIEVLKKYVDPNQTTLTVSQMVSDGFRRSKEPFLTSILALWRTWHIKYLKEKA 796
Query: 627 KLPVTESYYLMGTVDPTGILKS--------------------NEVCIILKDGQVS----- 661
K+ + + L+G +D TGILK E+ + + + S
Sbjct: 797 KIVIDKGTNLLGVMDETGILKGYFYDKIPKKDASLEQKLAALPEIFLQIPRSEASEDGAT 856
Query: 662 WEKV----LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGG 717
+E + ++ RNP LH GDI V++A V EL + + P G R +A +GG
Sbjct: 857 YEVIEGLCILARNPSLHPGDIRVVRAVNVPELHSL----RDVVVLPQTGDRDIASMCSGG 912
Query: 718 DFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRL---IDFSLEELESELFKLFLNT 774
D DGD Y + + +L+ + W ++NK D +++E+ S F +++
Sbjct: 913 DLDGDDYLIIWDQDLIH-----KDWFLDPMRYTSNKAQDLDHDVTVDEVTS-FFVMYMKN 966
Query: 775 RFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIK 834
P+ A + A W + E +E +RL ++ DA+D K+G
Sbjct: 967 DSLPTIAHAHVA--WADQL------------EDGVNEEKCIRLAQLHSDAVDY-NKTGRP 1011
Query: 835 VEVPEDLKVEKFPCYMRRDES--VSFESTSVLGTIYNTVKSYEAV 877
+ +L+ ++P +M + + + + S +LG +Y+ V+ + V
Sbjct: 1012 AIMTRNLQPRRWPHFMEKPKPKDLIYHSEKILGQLYDAVERVDFV 1056
>gi|40794967|gb|AAR91037.1| RNA-directed RNA polymerase 2 [Hordeum vulgare subsp. vulgare]
Length = 1115
Score = 109 bits (273), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 177/752 (23%), Positives = 303/752 (40%), Gaps = 156/752 (20%)
Query: 149 PQYVALGELEFRKAFLILSYIGENSLEEVITADEIRGMRDLQMARFESEVWEKLGRKNIS 208
P YV + + + A +SY+ + L + E +++Q++R L NI+
Sbjct: 314 PGYVCIDHI--KHALENMSYLKKTCLNPINWLSE--KYKEIQISR------HMLTSPNIA 363
Query: 209 QEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGD-DNILLVKF-DE 266
+D G ++Y I T F GP +N + ++ D +N L + F DE
Sbjct: 364 LDD--------DGLAYVYRVQI-TPAKVYFYGPEINVSNRVVRNYSADLENFLRISFVDE 414
Query: 267 ELGGHRSS---------NNWNDS--YSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKD 315
+ RS+ NN + + Y++ + GI +G + + F F
Sbjct: 415 DCEKLRSTDLSPRSAPGNNASRTALYNRILSVLSNGITIGNKHFEFLAF----------- 463
Query: 316 PSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILS 375
S+S ++ ++SA++ +G + + R + R + +VA Y +RL S
Sbjct: 464 -SSSQLR------DNSAWMFASR----TGLSASDIREWMGNFRNIRNVAKYAARLGQSFS 512
Query: 376 KTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYK 435
+ + + + + E + + +G + +DG G IS D A
Sbjct: 513 ASTE------TLKVHKYEVQALPE------VTNGTKYVFSDGIGTISADFA--------- 551
Query: 436 EKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKL 495
+ RK A F+ P Q+R Y G KG + ++ +
Sbjct: 552 ----------DEVSRKCKLARFT------------PSAFQIR--YGG--YKGVVAIDPR- 584
Query: 496 PPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIF 555
+ +R SM K S+ T + L K QP +L+R LI LLS GV +
Sbjct: 585 SHWKLSLRSSMSKFP-----SENITLDVLAYSKY--QP--CFLNRQLITLLSTLGVRDNI 635
Query: 556 FLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLD-EPYLQ----- 609
F + A+ + + + A+ + ++L G D EPYL
Sbjct: 636 FELKQQAAVMQLNRLVTEPQAAIDAIELMPMGEITNVVKELLLCGYQPDVEPYLSMILQT 695
Query: 610 HRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILK------DGQVSWE 663
R S L++ + KS ++ + E +MG +D T LK EV I D V
Sbjct: 696 FRASKLLELKTKS----RIFIPEGRAMMGCLDETRTLKYGEVFIQASNSANESDKFVVTG 751
Query: 664 KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDM 723
KV+V +NP LH GDI +L+A Y L+ V + FP GPR +E +G D DGD+
Sbjct: 752 KVVVAKNPCLHPGDIRILEAVYTPVLDHMVN----CVVFPQQGPRPHPNECSGSDLDGDI 807
Query: 724 YFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFS--LEELESELFKLFLNTRF-CPSN 780
YFVS +P+L+ R ++ A +D +EE+ +N +N
Sbjct: 808 YFVSWDPDLI-----PTRMVAPMDYTPAPTETLDHDVVIEEVHEYFANYIVNESLGIIAN 862
Query: 781 AKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPED 840
A + AD E A ++L ++ A+D P K+G+ ++P
Sbjct: 863 AHVVFAD----------------KESLKAESTQCIKLAELFSIAVDYP-KTGVPAQIPSK 905
Query: 841 LKVEKFPCYMRRDESVSFESTSVLGTIYNTVK 872
L V ++P +M + + ++ S V+G +Y +K
Sbjct: 906 LHVREYPDFMEKLDRATYISKGVIGKLYREIK 937
>gi|392864142|gb|EAS35051.2| RNA-directed RNA polymerase [Coccidioides immitis RS]
Length = 1403
Score = 109 bits (273), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 158/657 (24%), Positives = 247/657 (37%), Gaps = 144/657 (21%)
Query: 257 DNILLVKF-DEELGGH---RSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEK 312
D L V+F DE+ G +N ++ +++ GI +G R Y F F +
Sbjct: 482 DRFLRVRFTDEKFEGRIQPSHNNTMDEVFTRVKRTMMNGITLGDRHYEFLAFGN------ 535
Query: 313 KKDPSTSPVKCYFVRMESSAFIDMGYQYI--LSGKTVHEARYMFMHVRTVSSVANYMSRL 370
S F + G + L T R H + +A + +RL
Sbjct: 536 ------------------SQFREHGAYFFASLPHLTAANIRAWMGHFSDIKEIARHAARL 577
Query: 371 SLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCP 430
S T V + I IED + ++G +DG G IS LA
Sbjct: 578 GQCFSTTRA--VTGCPVQIREIED----------IQRNGYTF--SDGVGRISRFLAQMVM 623
Query: 431 T-YVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTL 489
T + K C GEPP + Q RL KG L
Sbjct: 624 TEFKIKTPC-----------------------------GEPPSVFQFRL----GGCKGIL 650
Query: 490 LLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYG 549
++ + Q + IR S K A N LEV++ S+ + L+R LI +LS
Sbjct: 651 TVSPEAQRQQVHIRKSQYKFPA--------IHNGLEVIRHSHFCMAS-LNRQLIVVLSSL 701
Query: 550 GVPEIFFLDILRNALDDARGVFSNKRNALKVSFNY-GGMDYDFTSARMILSGI-SLDEPY 607
VP+ FL+ LR L + +++ A+ + Y A MI G S EP+
Sbjct: 702 EVPDEVFLEKLRMMLGNLELAMTSETQAIHLLHKYIDPNQMTLVLAEMIQDGFQSSKEPF 761
Query: 608 LQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKS------------------ 648
+ L + + K L + K+ + E L G +D TG LK
Sbjct: 762 VTSLLELWRAWQIKYLKEKAKIIIEEGACLFGCLDETGTLKGLFHDNIPSKDASYEERLA 821
Query: 649 --NEVCIIL----KDG--QVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAI 700
E+ + + DG ++ ++ RNP LH GDI V+KA L + I
Sbjct: 822 CLPEIFVQISRANNDGKYEIIEGPCIIARNPSLHPGDIRVVKAVNAPALHHL----RDVI 877
Query: 701 FFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKH--FKESERWMSTSKNLSANKRLIDF 758
FP G R + +GGD DGD Y V + +LL FK+ + + K L ++ D
Sbjct: 878 VFPQTGDRDIPSMCSGGDLDGDDYLVIWDQDLLPKDWFKQPMNYAPSVKALRLSR---DV 934
Query: 759 SLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLI 818
++ ++ S N R LA W + EK +RL
Sbjct: 935 TVNDITSFFVTYMKNDRLAQIAHSHLA---WADYL------------EKGVNDSKCIRLA 979
Query: 819 NIYYDALDAPKKSGIKVEVPEDLKVEKFPCYM---RRDESVSFESTSVLGTIYNTVK 872
++ A+D K+GI ++ +DL K+P +M + + + S +LG +Y+ V+
Sbjct: 980 ELHSAAVDY-NKTGIPAKMTKDLAPRKWPHFMEKKHKPKDAQYISQKILGKLYDIVE 1035
>gi|391863075|gb|EIT72389.1| RNA-directed RNA polymerase QDE-1 [Aspergillus oryzae 3.042]
Length = 1458
Score = 109 bits (273), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 179/743 (24%), Positives = 292/743 (39%), Gaps = 156/743 (20%)
Query: 257 DNILLVKF-DEELGGHRSS---NNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEK 312
D L V+F DE+L G +S + ++ +++ GI++G R Y F F +
Sbjct: 552 DRFLRVRFTDEKLLGRINSTTDSTMDEIFTRIKRALTNGIVIGDRRYEFLAFGN------ 605
Query: 313 KKDPSTSPVKCYFVRMESSAFIDMGYQYI--LSGKTVHEARYMFMHVRTVSSVANYMSRL 370
S F + G + L T R H ++ +VA + +RL
Sbjct: 606 ------------------SQFREHGAYFFAPLPNLTAANIRAWMGHFNSIRNVAKHAARL 647
Query: 371 SLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCP 430
S T + +++ +IED V ++G +DG G IS LA
Sbjct: 648 GQCFSTTRAIAG--CPVDVVKIED----------VERNGYNF--SDGVGRISRFLA---- 689
Query: 431 TYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLL 490
+ EL + ++ GEPP Q RL KG L
Sbjct: 690 ----------------QMSMSEL--------KIKTPTGEPPSAFQFRL----GGCKGMLA 721
Query: 491 LNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGG 550
++ + Q + IR S K A N LE+V+ S T L+R LI +LS G
Sbjct: 722 VSSEAQRQEVHIRKSQFKFAA--------IHNGLEIVRWSQFSMAT-LNRQLIIVLSTLG 772
Query: 551 VPEIFF---LDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLD-EP 606
+P+ F L + LD A LK + M T ++M+L G EP
Sbjct: 773 IPDQVFHAKLHTMLQGLDQALESDPQAIYWLKKYVDPNQMT--LTISQMVLDGFRRSKEP 830
Query: 607 YLQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKS--------NEVCIILKD 657
+L L++ K L + ++ V + L+G +D TG+L+ N+ + K
Sbjct: 831 FLTSVLTLWRAWHLKYLKEKARIAVDQGACLLGCMDETGLLQGYFHDKVPGNDASVEEKT 890
Query: 658 G-------QVSWEKV-----------LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYA 699
QVS + ++ RNP LH GDI V++A V +L +
Sbjct: 891 AALPEIFVQVSRPEADKKSEVIEGVCILARNPSLHPGDIRVVRAVNVPQLRHL----QDV 946
Query: 700 IFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKH--FKESERWMSTSKNLSANKRLID 757
+ P G R +A +GGD DGD Y V + +LL F+E ++ S A D
Sbjct: 947 VVLPQTGDRDIASMCSGGDLDGDDYIVIWDQDLLPKDWFREPMKYTSN----KAQDLDRD 1002
Query: 758 FSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRL 817
++ ++ S F ++ F P A + A + FL E +E +RL
Sbjct: 1003 VTVNDITS-FFVTYMKNDFLPRIAHAHLA------LADFL--------EDGVNEEKCIRL 1047
Query: 818 INIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMR---RDESVSFESTSVLGTIYNTVKSY 874
++ DA+D K+GI + +L+ K+P +M + + + S +LG +Y+ V+
Sbjct: 1048 AQLHSDAVDY-NKTGIPAILTRNLEPRKWPHFMEKFNKPKDRIYHSNKILGQLYDAVERI 1106
Query: 875 EAVDRSVTEIWK--LPCFDDGVPEACMTKWKGYYDQYRWEMKEAIDKCTVEREEAAELVI 932
+ V K L C + VP+ +T K QY M+ + + ++ E
Sbjct: 1107 DFVPSLEMPFDKRLLNC-EIEVPDDLLTFAKNLKGQYDDAMRRIMAQHEIKTE------F 1159
Query: 933 EKYKQILYGAAEFEQSTRTLEEI 955
E + + G A + + EEI
Sbjct: 1160 EIWSTFVLGHANTSKDYKFHEEI 1182
>gi|15223906|ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
gi|75335341|sp|Q9LQV2.1|RDR1_ARATH RecName: Full=RNA-dependent RNA polymerase 1; Short=AtRDRP1;
AltName: Full=RNA-directed RNA polymerase 1
gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19 [Arabidopsis thaliana]
gi|110737376|dbj|BAF00633.1| putative RNA-directed RNA polymerase [Arabidopsis thaliana]
gi|332191105|gb|AEE29226.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
Length = 1107
Score = 109 bits (273), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 170/704 (24%), Positives = 290/704 (41%), Gaps = 135/704 (19%)
Query: 193 RFESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLN---QTRTH 249
R E + W G+ +S ++ D G +MY + T F GP +N + H
Sbjct: 340 RDEYKKWISKGKLPLSP-----TISLDDGLVYMYRVQV-TPARVYFSGPEVNVSNRVLRH 393
Query: 250 LQRELGDDNILLVKF-DEELGGHRS--------SNNWNDSYSKYNEIAREGILVGLRCYH 300
+ + +N L V F DE+L RS + Y + + R+GI++G + +
Sbjct: 394 YSKYI--NNFLRVSFVDEDLEKVRSMDLSPRSSTQRRTKLYDRIYSVLRDGIVIGDKKFE 451
Query: 301 FFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYM--FMHVR 358
F F S+S ++ E+SA++ I + H +M F H+R
Sbjct: 452 FLAF------------SSSQLR------ENSAWMFAPIDRITAA---HIRAWMGDFDHIR 490
Query: 359 TVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGT 418
+VA Y +RL S + + +N+ E E D + + G + +DG
Sbjct: 491 ---NVAKYAARLGQSFSSSRET------LNVRSDEIEVIPDVE---IISLGTRYVFSDGI 538
Query: 419 GFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRL 478
G IS + A R + RK FS P Q+R
Sbjct: 539 GKISAEFA-------------------RKVARKCGLTEFS------------PSAFQIR- 566
Query: 479 FYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSN-QPRKTY 537
Y G KG + ++ + + +R SM K +++ L+V+ S QP Y
Sbjct: 567 -YGG--YKGVVAVDPN-SSKKLSLRKSMSKFESEN--------TKLDVLAWSKYQP--CY 612
Query: 538 LSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALK-VSFNYGGMDYDFTSARM 596
++R LI LLS GV + F R +D + ++ A + + G + + A +
Sbjct: 613 MNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHEALGLMAPGENTNILKA-L 671
Query: 597 ILSGISLD-EPYLQHRLSILMKEEKKSLQA-GKLPVTESYYLMGTVDPTGILKSNEVCII 654
IL G D EP+L L + L+ ++ ++ +MG +D T L+ +V +
Sbjct: 672 ILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQ 731
Query: 655 LKDGQVSWEK------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPR 708
D + V+V +NP LH GD+ VL+A V L V + FP G R
Sbjct: 732 YSDPMRPGRRFIITGPVVVAKNPCLHPGDVRVLQAVNVPALNHMVD----CVVFPQKGLR 787
Query: 709 SLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELF 768
+E +G D DGD+YFV + EL+ + SE T + D ++EE+E
Sbjct: 788 PHPNECSGSDLDGDIYFVCWDQELVPP-RTSEPMDYTPEPTQILDH--DVTIEEVEEYFA 844
Query: 769 KLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAP 828
+N ++ + A+ A D+ E A + + L + A+D P
Sbjct: 845 NYIVN------DSLGIIANAHTAFADK---------EPLKAFSDPCIELAKKFSTAVDFP 889
Query: 829 KKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVK 872
K +G+ +P+ L V+++P +M + + ++ES +V+G ++ VK
Sbjct: 890 K-TGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVK 932
>gi|83773394|dbj|BAE63521.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1458
Score = 109 bits (273), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 179/743 (24%), Positives = 292/743 (39%), Gaps = 156/743 (20%)
Query: 257 DNILLVKF-DEELGGHRSS---NNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEK 312
D L V+F DE+L G +S + ++ +++ GI++G R Y F F +
Sbjct: 552 DRFLRVRFTDEKLLGRINSTTDSTMDEIFTRIKRALTNGIVIGDRRYEFLAFGN------ 605
Query: 313 KKDPSTSPVKCYFVRMESSAFIDMGYQYI--LSGKTVHEARYMFMHVRTVSSVANYMSRL 370
S F + G + L T R H ++ +VA + +RL
Sbjct: 606 ------------------SQFREHGAYFFAPLPNLTAANIRAWMGHFNSIRNVAKHAARL 647
Query: 371 SLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCP 430
S T + +++ +IED V ++G +DG G IS LA
Sbjct: 648 GQCFSTTRAIAG--CPVDVVKIED----------VERNGYNF--SDGVGRISRFLA---- 689
Query: 431 TYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLL 490
+ EL + ++ GEPP Q RL KG L
Sbjct: 690 ----------------QMSMSEL--------KIKTPTGEPPSAFQFRL----GGCKGMLA 721
Query: 491 LNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGG 550
++ + Q + IR S K A N LE+V+ S T L+R LI +LS G
Sbjct: 722 VSSEAQRQEVHIRKSQFKFAA--------IHNGLEIVRWSQFSMAT-LNRQLIIVLSTLG 772
Query: 551 VPEIFF---LDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLD-EP 606
+P+ F L + LD A LK + M T ++M+L G EP
Sbjct: 773 IPDQVFHAKLHTMLQGLDQALESDPQAIYWLKKYVDPNQMT--LTISQMVLDGFRRSKEP 830
Query: 607 YLQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKS--------NEVCIILKD 657
+L L++ K L + ++ V + L+G +D TG+L+ N+ + K
Sbjct: 831 FLTSVLTLWRAWHLKYLKEKARIAVDQGACLLGCMDETGLLQGYFHDKVPGNDASVEEKT 890
Query: 658 G-------QVSWEKV-----------LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYA 699
QVS + ++ RNP LH GDI V++A V +L +
Sbjct: 891 AALPEIFVQVSRPEADKKSEVIEGVCILARNPSLHPGDIRVVRAVNVPQLRHL----QDV 946
Query: 700 IFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKH--FKESERWMSTSKNLSANKRLID 757
+ P G R +A +GGD DGD Y V + +LL F+E ++ S A D
Sbjct: 947 VVLPQTGDRDIASMCSGGDLDGDDYIVIWDQDLLPKDWFREPMKYTSN----KAQDLDRD 1002
Query: 758 FSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRL 817
++ ++ S F ++ F P A + A + FL E +E +RL
Sbjct: 1003 VTVNDITS-FFVTYMKNDFLPRIAHAHLA------LADFL--------EDGVNEEKCIRL 1047
Query: 818 INIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMR---RDESVSFESTSVLGTIYNTVKSY 874
++ DA+D K+GI + +L+ K+P +M + + + S +LG +Y+ V+
Sbjct: 1048 AQLHSDAVDY-NKTGIPAILTRNLEPRKWPHFMEKFNKPKDRIYHSNKILGQLYDAVERI 1106
Query: 875 EAVDRSVTEIWK--LPCFDDGVPEACMTKWKGYYDQYRWEMKEAIDKCTVEREEAAELVI 932
+ V K L C + VP+ +T K QY M+ + + ++ E
Sbjct: 1107 DFVPSLEMPFDKRLLNC-EIEVPDDLLTFAKNLKGQYDDAMRRIMAQHEIKTE------F 1159
Query: 933 EKYKQILYGAAEFEQSTRTLEEI 955
E + + G A + + EEI
Sbjct: 1160 EIWSTFVLGHANTSKDYKFHEEI 1182
>gi|106733035|gb|ABF82437.1| putative RNA-dependent RNA polymerase 6 [Physcomitrella patens
subsp. patens]
gi|106733051|gb|ABF82438.1| putative RNA-dependent RNA polymerase 6 [Physcomitrella patens
subsp. patens]
Length = 1152
Score = 109 bits (272), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 100/373 (26%), Positives = 170/373 (45%), Gaps = 46/373 (12%)
Query: 524 LEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFN 583
LEVV S YL+R +I LLS V F + + + + + A ++
Sbjct: 612 LEVVNWSKY-LPCYLNRQIICLLSTLKVENAVFKSLQDAQVARLKAMLGDPNQAYEI-VT 669
Query: 584 YGGMDYDFTSARMILSG-ISLDEPYLQHRL-SILMKEEKKSLQAGKLPVTESYYLMGTVD 641
D T+A M+ G + L EP+L L SI + + ++ V +++G +D
Sbjct: 670 TSCSDSHSTAATMLRGGFLPLKEPHLYELLVSIKFSLLEDLVSKARIFVPNGRWVIGCMD 729
Query: 642 PTGILKSNEVCIILKDG--------------------QVSWEKVLVYRNPGLHFGDIHVL 681
TG+L + C I G QV KV++ +NP LH GDI +L
Sbjct: 730 ETGLLNYGQ-CFIHVSGPVSKACLGGDGNNLGHSGLLQVITGKVIMVKNPCLHPGDIRIL 788
Query: 682 KATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESER 741
+A + EL V + P NGPR +E++G D DGD+YF +P L+ ES
Sbjct: 789 EAVDLPELHSMVD----CLVLPQNGPRPHPNEVSGSDLDGDVYFTCWDPNLIPPSGESWE 844
Query: 742 WMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGD 801
M +A+ I + ++ ++ F+N S+ D + + + D
Sbjct: 845 PM----EYAAHDSKILYRPANIK-DVKNFFVN---------SMMNDKLGFISNAHVARAD 890
Query: 802 ESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFEST 861
+S E A+ + LRL ++ A+D P K+G +P DL+V ++P +M ++ +V+++S
Sbjct: 891 KSPE--GALDSDCLRLAHLASIAVDFP-KTGKNATMPHDLRVNEWPDFMEKEGAVTYQSN 947
Query: 862 SVLGTIYNTVKSY 874
V+G +Y +V +
Sbjct: 948 KVIGELYRSVTKF 960
>gi|317151427|ref|XP_001824654.2| RNA-directed RNA polymerase (Sad-1) [Aspergillus oryzae RIB40]
Length = 1403
Score = 109 bits (272), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 179/743 (24%), Positives = 292/743 (39%), Gaps = 156/743 (20%)
Query: 257 DNILLVKF-DEELGGHRSS---NNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEK 312
D L V+F DE+L G +S + ++ +++ GI++G R Y F F +
Sbjct: 497 DRFLRVRFTDEKLLGRINSTTDSTMDEIFTRIKRALTNGIVIGDRRYEFLAFGN------ 550
Query: 313 KKDPSTSPVKCYFVRMESSAFIDMGYQYI--LSGKTVHEARYMFMHVRTVSSVANYMSRL 370
S F + G + L T R H ++ +VA + +RL
Sbjct: 551 ------------------SQFREHGAYFFAPLPNLTAANIRAWMGHFNSIRNVAKHAARL 592
Query: 371 SLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCP 430
S T + +++ +IED V ++G +DG G IS LA
Sbjct: 593 GQCFSTTRAIAG--CPVDVVKIED----------VERNGYNF--SDGVGRISRFLA---- 634
Query: 431 TYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLL 490
+ EL + ++ GEPP Q RL KG L
Sbjct: 635 ----------------QMSMSEL--------KIKTPTGEPPSAFQFRL----GGCKGMLA 666
Query: 491 LNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGG 550
++ + Q + IR S K A N LE+V+ S T L+R LI +LS G
Sbjct: 667 VSSEAQRQEVHIRKSQFKFAA--------IHNGLEIVRWSQFSMAT-LNRQLIIVLSTLG 717
Query: 551 VPEIFF---LDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLD-EP 606
+P+ F L + LD A LK + M T ++M+L G EP
Sbjct: 718 IPDQVFHAKLHTMLQGLDQALESDPQAIYWLKKYVDPNQMT--LTISQMVLDGFRRSKEP 775
Query: 607 YLQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKS--------NEVCIILKD 657
+L L++ K L + ++ V + L+G +D TG+L+ N+ + K
Sbjct: 776 FLTSVLTLWRAWHLKYLKEKARIAVDQGACLLGCMDETGLLQGYFHDKVPGNDASVEEKT 835
Query: 658 G-------QVSWEKV-----------LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYA 699
QVS + ++ RNP LH GDI V++A V +L +
Sbjct: 836 AALPEIFVQVSRPEADKKSEVIEGVCILARNPSLHPGDIRVVRAVNVPQLRHL----QDV 891
Query: 700 IFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKH--FKESERWMSTSKNLSANKRLID 757
+ P G R +A +GGD DGD Y V + +LL F+E ++ S A D
Sbjct: 892 VVLPQTGDRDIASMCSGGDLDGDDYIVIWDQDLLPKDWFREPMKYTSN----KAQDLDRD 947
Query: 758 FSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRL 817
++ ++ S F ++ F P A + A + FL E +E +RL
Sbjct: 948 VTVNDITS-FFVTYMKNDFLPRIAHAHLA------LADFL--------EDGVNEEKCIRL 992
Query: 818 INIYYDALDAPKKSGIKVEVPEDLKVEKFPCYM---RRDESVSFESTSVLGTIYNTVKSY 874
++ DA+D K+GI + +L+ K+P +M + + + S +LG +Y+ V+
Sbjct: 993 AQLHSDAVDY-NKTGIPAILTRNLEPRKWPHFMEKFNKPKDRIYHSNKILGQLYDAVERI 1051
Query: 875 EAVDRSVTEIWK--LPCFDDGVPEACMTKWKGYYDQYRWEMKEAIDKCTVEREEAAELVI 932
+ V K L C + VP+ +T K QY M+ + + ++ E
Sbjct: 1052 DFVPSLEMPFDKRLLNC-EIEVPDDLLTFAKNLKGQYDDAMRRIMAQHEIKTE------F 1104
Query: 933 EKYKQILYGAAEFEQSTRTLEEI 955
E + + G A + + EEI
Sbjct: 1105 EIWSTFVLGHANTSKDYKFHEEI 1127
>gi|393247225|gb|EJD54733.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 1245
Score = 109 bits (272), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 110/448 (24%), Positives = 200/448 (44%), Gaps = 72/448 (16%)
Query: 408 DGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHY 467
DG A + +DG+G IS ++ V+ E C ++R++ R
Sbjct: 608 DGPACM-SDGSGLIS----IEAMAAVWMEFCRG--RSKRTVIRPP--------------- 645
Query: 468 GEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVV 527
PP ++QVR+ KGTL ++ LP + + +RPSM+K +A G+ FN +EV
Sbjct: 646 -PPPSVIQVRV----GGAKGTLFVDPMLPGRAVVLRPSMMKFEA------GERFNQIEVC 694
Query: 528 KTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKV--SFNYG 585
+P YL+R LI +L GVP+ FL + ++ ++ + +A + S G
Sbjct: 695 MAFTKPSPAYLNRPLIMVLEARGVPKETFLRLQQDVVERTQLATRTLESAAALLESNGLG 754
Query: 586 G----------MDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQ-AGKLPVTESY 634
G + F++ + S + + ++ L + + L+ G++P+ S+
Sbjct: 755 GPVGLPTLFRRIRQRFSNFPEVDSYVLTQDAFVARTLDFTVNHVLRGLKFRGRIPIPFSW 814
Query: 635 YLMGTVDPTGILKSNEVCIILKDGQVSWEK-----VLVYRNPGLHFGDIHVLKATYVKEL 689
L+G D GIL E+ + +++ +S + V+V R+P H GD+ ++KA
Sbjct: 815 TLVGVPDHHGILNEGEIFVCIREEDISQVEYLEGDVVVSRSPTCHPGDVMIMKAIGRPPA 874
Query: 690 EDFVGTSK--YAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSK 747
T + + F G RS + GGD+DGD Y V++ P L+ K + M K
Sbjct: 875 GTAFATERPINCVVFSTKGARSPGSCLGGGDYDGDEYVVTKLPS-LRPTKPAGPAM--YK 931
Query: 748 NLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEK 807
N +++E ++++ F N F ++ A W + D + E+
Sbjct: 932 NTPRQDIGRPYTME----DIYEFFTN--FVINDQLPRIASLWLRIAD---------SSEE 976
Query: 808 AAMKENMLRLINIYYDALDAPKKSGIKV 835
+ E ++L ++ A+D P K+G+ V
Sbjct: 977 SVYNEQCMKLAELHSVAVDYP-KTGVPV 1003
>gi|425780985|gb|EKV18967.1| RNA-directed RNA polymerase (Sad-1), putative [Penicillium digitatum
PHI26]
Length = 1533
Score = 109 bits (272), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 154/673 (22%), Positives = 258/673 (38%), Gaps = 143/673 (21%)
Query: 281 YSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQY 340
Y++ GI +G R Y F F + E YF ++
Sbjct: 709 YTRVKRTLANGISIGDRHYEFLAFGNSQFREHG---------AYFFAPDAG--------- 750
Query: 341 ILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDK 400
+S T+ F H+R +VA Y +RL S T ++ C D
Sbjct: 751 -VSAATIRAWMGQFNHIR---NVAKYAARLGQCFSTTRAF-------TGSSVQVATCND- 798
Query: 401 DGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDV 460
V ++G +DG G +S+ LA +++ +I
Sbjct: 799 ----VVRNG--FTFSDGVGKVSKFLAQMV-------------TSQHNI------------ 827
Query: 461 ARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQT 520
++ GE P Q RL KG L+++ PQ + IRPS K + T
Sbjct: 828 ---KTLTGESPSAFQFRL----GGAKGMLVVSPDPMPQEVHIRPSQQKFET--------T 872
Query: 521 FNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKV 580
LE+++ S T L+R LI +LS G+P+ F L + L V N A+ +
Sbjct: 873 QAGLEIIRWSQYSLAT-LNRQLILVLSALGIPDKVFHSKLNSMLGSFHRVMCNDSKAINL 931
Query: 581 SFNYGGMDYDFTS---ARMILSGISLDE-PYLQHRLSILMKEEKKSL-QAGKLPVTESYY 635
Y +D + T+ A+M+ G +E P+ L + K L + K+ + +
Sbjct: 932 LQKY--IDPNQTTLILAQMVSDGFRQNEEPFANTMLELWKSWHLKHLKEKAKIAIDQGAN 989
Query: 636 LMGTVDPTGILKSN------------------------EVCIILKDGQ--VSWEKVLVYR 669
L+G +D TG+LK ++C + +G+ V ++ R
Sbjct: 990 LLGVMDETGVLKGYFKNTLPRRGASYAQKLAALPEIFVQICRLEGNGEYEVIEGLCILAR 1049
Query: 670 NPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRN 729
NP LH GDI V++A EL+ + + P G + +A +GGD DGD Y + +
Sbjct: 1050 NPSLHPGDIRVVRAVNRPELKGL----RDVVVLPQTGDQDIASMCSGGDLDGDDYLIIWD 1105
Query: 730 PELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCW 789
P+L+ RW + +K D + E+ F+ + DC
Sbjct: 1106 PDLI-----PTRWFVECMDYKGSK-APDLDHDVTVDEITSFFVTY---------MKNDCL 1150
Query: 790 QAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCY 849
+ L D + +E +RL ++ DA+D KSG + L + +P +
Sbjct: 1151 PRIAHAHLAWADRLP--RGVWEEKCIRLAQLHSDAVDY-NKSGAHARMARSLDPKFWPHF 1207
Query: 850 M----RRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCFDDGVPEACMTKWKGY 905
M +R S+ ++ST +LG +Y+ V + V + FD + E+ +
Sbjct: 1208 MEKRFKRPSSI-YKSTKILGQLYDAVVTPNFVPKLGKP------FDSRILESPLASASET 1260
Query: 906 YDQYRWEMKEAID 918
Y +Y E+K D
Sbjct: 1261 YIEYARELKAEFD 1273
>gi|308080784|ref|NP_001183867.1| uncharacterized protein LOC100502460 [Zea mays]
gi|89473792|gb|ABD72708.1| RNA-dependent RNA polymerase [Zea mays]
gi|374257933|gb|AEZ01781.1| RNA-dependent DNA polymerase [Zea mays]
gi|414586834|tpg|DAA37405.1| TPA: mediator of paramutation1 [Zea mays]
Length = 1127
Score = 109 bits (272), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 151/625 (24%), Positives = 250/625 (40%), Gaps = 136/625 (21%)
Query: 281 YSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQY 340
Y + I +EG +G + Y F F S S ++ V M +S
Sbjct: 444 YHRILSILKEGFCIGPKKYEFLAF------------SASQLRGNSVWMFASN-------- 483
Query: 341 ILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDK 400
S T R H + SV+ +R+ + S + + + S ++E I D
Sbjct: 484 --SSLTAENIRRWMGHFEDIRSVSKCAARMGQLFSSS-RQTFEVSSYDVEVIPDIE---- 536
Query: 401 DGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDV 460
V DG I +DG G IS A + + +
Sbjct: 537 ----VTTDGTKYIFSDGIGKISTRFARQVAKLIGLDP----------------------- 569
Query: 461 ARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQT---IQIRPSMIKVKADRDLSD 517
PP Q+R Y G KG + ++ P + + +RPSM K ++ + +
Sbjct: 570 -------AHPPSAFQIR--YGG--YKGVITID----PTSFFNLSLRPSMKKFESKSTMLN 614
Query: 518 GQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNA 577
+ + +QP Y++R +I+LLS G+ + F + ++ + ++ G+ +NK A
Sbjct: 615 ITNW-------SKSQP--CYVNREIISLLSTLGIKDEVFESMQQDDMHESDGMLTNKEAA 665
Query: 578 LKVSFNYGGMDYDFTSARMILSGISL-DEPYL-----QHRLSILMKEEKKSLQAGKLPVT 631
L V GG D T+A M+L G EPYL HR + L + K+ V
Sbjct: 666 LSVLGKIGGGDTK-TAADMLLQGYEPSSEPYLLMILKAHRANRLTDIRTRC----KIHVQ 720
Query: 632 ESYYLMGTVDPTGILKSNEVCIILK-----------------DGQ--VSWEKVLVYRNPG 672
+ L+G +D T L+ +V I + DG+ V KV + +NP
Sbjct: 721 KGRVLIGCLDETCKLEYGQVYIRITKNHKEQKYSEQPFFCNDDGKTAVIVGKVAITKNPC 780
Query: 673 LHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPEL 732
LH GD+ VL+A Y L D G + FP G R +E +GGD DGD++F++ + +L
Sbjct: 781 LHPGDVRVLEAVYDPGL-DARGLID-CVVFPQRGERPHPNECSGGDLDGDLFFITWDDKL 838
Query: 733 LKHFKESERWMSTSKNLSANKRLID--FSLEELESELFKLFLNTRFCPSNAKSLAADCWQ 790
+ E+ + + R++D +LEE++ +N D
Sbjct: 839 IP-----EKVDAPMDYTATRPRIMDHAVTLEEIQKHFVSYMIN-------------DTLG 880
Query: 791 AVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYM 850
A+ L D + A ++L ++ A+D K+G E+P L+ +FP +M
Sbjct: 881 AISTAHLIHADR--DPLKARSPECVQLAALHSMAVDF-AKTGAPAEMPLALRPREFPDFM 937
Query: 851 RRDESVSFESTSVLGTIYNTVKSYE 875
R E + S VLG +Y +E
Sbjct: 938 ERWERPMYVSNGVLGKLYRAALRHE 962
>gi|168067479|ref|XP_001785643.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
gi|162662723|gb|EDQ49541.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
Length = 1049
Score = 109 bits (272), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 100/373 (26%), Positives = 170/373 (45%), Gaps = 46/373 (12%)
Query: 524 LEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFN 583
LEVV S YL+R +I LLS V F + + + + + A ++
Sbjct: 519 LEVVNWSKY-LPCYLNRQIICLLSTLKVENAVFKSLQDAQVARLKAMLGDPNQAYEI-VT 576
Query: 584 YGGMDYDFTSARMILSG-ISLDEPYLQHRL-SILMKEEKKSLQAGKLPVTESYYLMGTVD 641
D T+A M+ G + L EP+L L SI + + ++ V +++G +D
Sbjct: 577 TSCSDSHSTAATMLRGGFLPLKEPHLYELLVSIKFSLLEDLVSKARIFVPNGRWVIGCMD 636
Query: 642 PTGILKSNEVCIILKDG--------------------QVSWEKVLVYRNPGLHFGDIHVL 681
TG+L + C I G QV KV++ +NP LH GDI +L
Sbjct: 637 ETGLLNYGQ-CFIHVSGPVSKACLGGDGNNLGHSGLLQVITGKVIMVKNPCLHPGDIRIL 695
Query: 682 KATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESER 741
+A + EL V + P NGPR +E++G D DGD+YF +P L+ ES
Sbjct: 696 EAVDLPELHSMVD----CLVLPQNGPRPHPNEVSGSDLDGDVYFTCWDPNLIPPSGESWE 751
Query: 742 WMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGD 801
M +A+ I + ++ ++ F+N S+ D + + + D
Sbjct: 752 PM----EYAAHDSKILYRPANIK-DVKNFFVN---------SMMNDKLGFISNAHVARAD 797
Query: 802 ESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFEST 861
+S E A+ + LRL ++ A+D P K+G +P DL+V ++P +M ++ +V+++S
Sbjct: 798 KSPE--GALDSDCLRLAHLASIAVDFP-KTGKNATMPHDLRVNEWPDFMEKEGAVTYQSN 854
Query: 862 SVLGTIYNTVKSY 874
V+G +Y +V +
Sbjct: 855 KVIGELYRSVTKF 867
>gi|413955011|gb|AFW87660.1| hypothetical protein ZEAMMB73_096378 [Zea mays]
Length = 1901
Score = 108 bits (271), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 134/512 (26%), Positives = 218/512 (42%), Gaps = 114/512 (22%)
Query: 399 DKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFS 458
D+D V ++G +DG G I+EDLAL+ + L F+
Sbjct: 1299 DEDLEDVTRNGYNF--SDGIGVITEDLALEVAEML------------------PLADRFA 1338
Query: 459 DVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQT------IQIRPSMIKVKAD 512
P Q+R Y G KG + ++ P Q + +RPSM K ++
Sbjct: 1339 ------------PSAYQIR--YAG--FKGVVAVSPPGPGQEDRGTRRMSLRPSMRKFES- 1381
Query: 513 RDLSDGQTFNSLEVVK-TSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVF 571
T N LEVV T QP +L+R +I LL+ GVP+ F + L R V
Sbjct: 1382 -------THNVLEVVSWTKFQP--AFLNRQIITLLTTLGVPDDSFWQLQEAMLGKLRRVL 1432
Query: 572 SNKRNALKVSFNYGGMDYDFTSARMILSGIS-LDEPYLQHRL-SILMKEEKKSLQAGKLP 629
S+ A +V N + T+ M+ +G + EP+L+ L +I + + L +
Sbjct: 1433 SDSDVAYEVVTN-SCPEQGSTAGLMLGAGFAPATEPHLRAMLLAICTSQMQGLLNKTWIF 1491
Query: 630 VTESYYLMGTVDPTGILKSNEVCIILK-----------------------DGQVSWEKVL 666
V + +LMG +D GIL+ + + + + QV V+
Sbjct: 1492 VPKGRWLMGCLDEFGILEQGQCFLRVSTPSLGSRCVNRSPIFPSEYKGDANAQVITGTVV 1551
Query: 667 VYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFV 726
+ +NP LH GD+ +L+A V +L V FP G R ADE +G D DGD+YFV
Sbjct: 1552 MAKNPCLHPGDVRILEAVDVPDLYHLVD----CFVFPKKGERPHADEASGSDLDGDVYFV 1607
Query: 727 SRNPELLKHFKESERWM----STSKNLSAN---KRLIDFSLEELESELFKLFLNTRFCPS 779
+ + L+ ++S M + +K L + + IDF LE + + R C
Sbjct: 1608 TWDESLVPPGRKSCTPMDYSPAKTKQLPHDVHQQDTIDFYLESMVYDNLG-----RIC-- 1660
Query: 780 NAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPE 839
NA + AD + AM + L + A+D+ K+G V +P
Sbjct: 1661 NAHAAHAD----------------RSDDGAMDPKCIELARLASIAVDS-AKTGEIVRMPP 1703
Query: 840 DLKVEKFPCYMRRDESVSFESTSVLGTIYNTV 871
L +++P +M +++++S+ S +LG +Y +V
Sbjct: 1704 ALSPKEYPDFMGKEDAISYRSEKILGRLYRSV 1735
>gi|413938756|gb|AFW73307.1| putative RNA-dependent RNA polymerase [Zea mays]
Length = 933
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 167/700 (23%), Positives = 285/700 (40%), Gaps = 140/700 (20%)
Query: 204 RKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGD-DNILLV 262
RK+ + ++ D G +++ + T F GP +N + ++ D DN L +
Sbjct: 178 RKSRHASQKLSNISLDDGLVYVHRVQV-TPAKVYFYGPEINVSNRVVRHFSADIDNFLRI 236
Query: 263 KF-DEELGGHRS------SNNWNDS-----YSKYNEIAREGILVGLRCYHFFVFKDGGKE 310
F DE+ RS S + ND+ Y++ + GI +G + + F F
Sbjct: 237 SFVDEDCEKLRSADLSPRSTSGNDARRTALYNRVLSVLSNGINIGDKHFEFLAF------ 290
Query: 311 EKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRL 370
S+S ++ ++SA++ Q G T + R R + +VA Y +RL
Sbjct: 291 ------SSSQLR------DNSAWMFASRQ----GLTASDIRKWMGDFRDIRNVAKYAARL 334
Query: 371 SLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCP 430
S + + + + +ERI D +G I +DG G IS + A++
Sbjct: 335 GQSFSSSTE-TLKVHKSEVERIPD-----------ITNGTKYIFSDGVGKISANFAVEVA 382
Query: 431 TYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLL 490
KC + R F+ P + Q+R Y G KG +
Sbjct: 383 M-----KC--------KLKR------FA------------PSVFQIR--YGG--YKGVVA 407
Query: 491 LNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGG 550
++ + + +R SM K + S+ T + L K QP +L+R LI LLS G
Sbjct: 408 VDTR-SNHKLSLRKSMSKFQ-----SENITLDVLAYSKY--QP--CFLNRQLITLLSTLG 457
Query: 551 VPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLD-EPYLQ 609
V + F + AL + + + A + + ++ G D EPYL
Sbjct: 458 VSDNVFELKQKEALRQLNRMVTEPQAAREAVELMPMGEVTNVVKELLSCGYQPDHEPYLS 517
Query: 610 HRLSILMKEEKKSLQA-GKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEK---- 664
L + L+ ++ +T+ +MG +D T LK +V + Q S+
Sbjct: 518 MLLQTFRASKLLELKTKSRIFITQGRAMMGCLDETCTLKYGQVFV-----QASYSADDHR 572
Query: 665 -------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGG 717
V+V +NP LH GDI VL+A V L + FP GPR +E +G
Sbjct: 573 KVVVTGKVVVAKNPCLHPGDIRVLQAVDVPALHHLFD----CVVFPQQGPRPHPNECSGS 628
Query: 718 DFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLI--DFSLEELESELFKLFLNTR 775
D DGD+YFVS +P L+ R + A+ + D ++EE++ +N
Sbjct: 629 DLDGDIYFVSWDPHLI-----PSRLVDPMDYTPASAETLDHDVTIEEIQEYFTNYIVNES 683
Query: 776 F-CPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIK 834
+NA + AD E A ++L ++ A+D P K+G+
Sbjct: 684 LGIIANAHVVFAD----------------QERMKAESPPCVQLAKLFSIAVDFP-KTGVP 726
Query: 835 VEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSY 874
+P +L V+++P +M + + V++ES V+G +Y +K +
Sbjct: 727 ALIPHELHVKEYPDFMEKLDKVTYESKGVIGKLYREIKKH 766
>gi|384495849|gb|EIE86340.1| hypothetical protein RO3G_11051 [Rhizopus delemar RA 99-880]
Length = 1099
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/278 (31%), Positives = 136/278 (48%), Gaps = 34/278 (12%)
Query: 461 ARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQT-IQIRPSMIKVKADRDLSDGQ 519
R + + G P +QVRL KG L ++ LP +Q+RPS IK D
Sbjct: 834 TRNQMNLGVDPSALQVRL----GGSKGVLAVDPNLPKGVHVQLRPSQIKFDTDH------ 883
Query: 520 TFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALK 579
LEVVK + R YL+R +I L+S GV + + L+++ L + + ++ AL
Sbjct: 884 --LELEVVKIATY-RNGYLNRQIIILMSALGVRDAYVLELVNTMLQNTEKILTDPLEAL- 939
Query: 580 VSFNYGGMDYDFTSARMILSGISLD-----EPYLQHRLSIL-MKEEKKSLQAGKLPVTES 633
+ DF ++ M+++ I +PY+Q+ L + K+ + K+ V +S
Sbjct: 940 --YALSPRSDDFGTSNMLVNAIQAGFLKSGDPYIQNILVLFRCSLLKELKKKAKVLVPKS 997
Query: 634 YYLMGTVDPTGILKSNEVCIILKDG-------QVSWEKVLVYRNPGLHFGDIHVLKATYV 686
L+G VD TG+L+SNEV + + D QV ++V ++RNP LH GD+ VL+A +
Sbjct: 998 ACLIGVVDETGLLESNEVFVQVWDNSATGNINQVITDRVSIFRNPSLHPGDLRVLQAVDI 1057
Query: 687 KELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMY 724
EL K + F G R + +GGD DGD Y
Sbjct: 1058 PELHHL----KNVVVFSSKGERDVPSMCSGGDLDGDEY 1091
>gi|413954935|gb|AFW87584.1| hypothetical protein ZEAMMB73_985632 [Zea mays]
Length = 1241
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 134/512 (26%), Positives = 216/512 (42%), Gaps = 114/512 (22%)
Query: 399 DKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFS 458
D+D V ++G +DG G I+EDLAL+ + L F+
Sbjct: 639 DEDLEDVTRNGYNF--SDGIGVITEDLALEVAEML------------------PLADRFA 678
Query: 459 DVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQT------IQIRPSMIKVKAD 512
P Q+R Y G KG + + P Q + +RPSM K ++
Sbjct: 679 ------------PSAYQIR--YAG--FKGVVAVWPPGPGQEDRGTRRMSLRPSMRKFES- 721
Query: 513 RDLSDGQTFNSLEVVK-TSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVF 571
T LEVV T QP +L+R +I LL+ GVP+ F + L R V
Sbjct: 722 -------THTVLEVVSWTKFQP--AFLNRQIITLLTTLGVPDDAFWQLQEAMLGKLRRVL 772
Query: 572 SNKRNALKVSFNYGGMDYDFTSARMILSGIS-LDEPYLQHRL-SILMKEEKKSLQAGKLP 629
S+ A +V N + T+ M+ +G + EP+L+ L +I + + L +
Sbjct: 773 SDSDVAYEVVIN-SCPEQGSTAGLMLGAGFAPATEPHLRAMLLAICTSQMQGLLNKTWIF 831
Query: 630 VTESYYLMGTVDPTGILKSNEVCIILK-----------------------DGQVSWEKVL 666
V + +LMG +D GIL+ + + + D QV V+
Sbjct: 832 VPKGRWLMGCLDEFGILEQGQCFLRVSTPSVGSRCVNRSPIFPSEYKGDADAQVITGTVV 891
Query: 667 VYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFV 726
+ +NP LH GD+ +L+A V +L V FP G R ADE +G D DGD+YFV
Sbjct: 892 MAKNPCLHPGDVRILEAVDVPDLYHLVD----CFVFPKKGERPHADEASGSDLDGDVYFV 947
Query: 727 SRNPELLKHFKESERWM----STSKNLSAN---KRLIDFSLEELESELFKLFLNTRFCPS 779
+ + L+ ++S M + +K L + + IDF LE + + R C
Sbjct: 948 TWDESLVPPGRKSCTPMDYSPAKTKQLPRDVHQQDTIDFYLESMVYDNLG-----RIC-- 1000
Query: 780 NAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPE 839
NA + AD + AM + L + A+D+ K+G V +P
Sbjct: 1001 NAHAAHAD----------------RSDDGAMDPKCIELARLASIAVDS-AKTGEIVRMPP 1043
Query: 840 DLKVEKFPCYMRRDESVSFESTSVLGTIYNTV 871
L +++P +M +++++S+ S +LG +Y +V
Sbjct: 1044 ALSPKEYPDFMGKEDAISYRSEKILGRLYRSV 1075
>gi|297809335|ref|XP_002872551.1| RNA-dependent RNA polymerase 2 [Arabidopsis lyrata subsp. lyrata]
gi|297318388|gb|EFH48810.1| RNA-dependent RNA polymerase 2 [Arabidopsis lyrata subsp. lyrata]
Length = 1134
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 181/772 (23%), Positives = 306/772 (39%), Gaps = 173/772 (22%)
Query: 281 YSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQY 340
Y++ I EGI VG + + F F S S ++ V M +S
Sbjct: 452 YNRVLSILGEGITVGPKRFEFLAF------------SASQLRGNSVWMFAS-------NE 492
Query: 341 ILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDK 400
+ + + E F +R++S A M +L +T+ + ++E+I D
Sbjct: 493 KIKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLNVRAQ----DVEQIPDIE---- 544
Query: 401 DGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDV 460
V DG +DG G IS A + +KC S V
Sbjct: 545 ----VTTDGADYCFSDGIGKISLAFAKQVA-----QKC-----------------GLSHV 578
Query: 461 ARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQT 520
P Q+R Y G KG + +++ + + +R SM+K ++
Sbjct: 579 ----------PSAFQIR--YGG--YKGVIAVDRS-SFRKMSLRDSMLKFDSN-------- 615
Query: 521 FNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFF-------LDILRNALDDARGVFSN 573
N + V + +L+R +I LLS G+ + F L +L N L+D
Sbjct: 616 -NRMLNVTRWTESMPCFLNREIICLLSTLGIEDAVFEAMQAVHLSMLGNMLED------- 667
Query: 574 KRNALKVSFNYGGMDYDFTSARMILSGIS-LDEPYLQHRLSILMKEEKKSLQA-GKLPVT 631
+ AL V G + +M+L G + EPYL L + + + L++ ++ V
Sbjct: 668 RDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRILVP 727
Query: 632 ESYYLMGTVDPTGILKSNEVCI-------------------ILKDGQVSWEKVLVYRNPG 672
+ L+G +D GIL+ +V + I ++ V KV+V +NP
Sbjct: 728 KGRILIGCMDEMGILEYGQVFVRVTLTKAELKSREQSYFHKIDEETSVVIGKVVVTKNPC 787
Query: 673 LHFGDIHVLKATYVKELED--FVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNP 730
LH GDI VL A Y E+ F+ I FP G R +E +GGD DGD +FVS +
Sbjct: 788 LHPGDIRVLDAIYEVNFEEKGFLD----CIIFPQKGERPHPNECSGGDLDGDQFFVSWDE 843
Query: 731 ELLKHFKESERWMSTSKNLSANKRLI---DFSLEELESELFKLFLNTRFCPSNAKSLAAD 787
+L+ M + + ++ I D +LEE+ K F++ + +D
Sbjct: 844 KLIPS------QMDPPMDYAGSRPRIMDHDVTLEEIH----KFFVDY---------MISD 884
Query: 788 CWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFP 847
+ L D E+ A + L L N++ A+D K +G E+P LK +FP
Sbjct: 885 TLGVISTAHLVHADRDPEK--ARSQKCLELANLHSRAVDFAK-TGAPAEMPYALKPREFP 941
Query: 848 CYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCFDDGVPEACMTKW----K 903
++ R E ++ S SV G +Y V+S A + E +D + EA + K
Sbjct: 942 DFLERFEKPTYISESVFGKLYRAVRSSLAQRKPEAESDGTLTYDATLEEAGFESFIETAK 1001
Query: 904 GYYDQYRWEMKEAIDKCTVEREEAAELVIEKYKQIL-------YGAAEFEQSTRTLEEIY 956
+ D Y ++ + EE I K K++ YG + ++ T ++++++
Sbjct: 1002 AHRDMYAEKLTSLMIYYGAVNEEEILTGILKTKEMYLARDNRRYGDMK-DRITLSVKDLH 1060
Query: 957 NEAL------------------AIYNITYDLAASRRQVSYCSFAWRVAGSAL 990
EA+ A Y +TY+ + ++++ SF W V L
Sbjct: 1061 KEAMGWFDKSCEDEQQKKKLASAWYYVTYNPSHRDEKLTFLSFPWIVGDVLL 1112
>gi|224141893|ref|XP_002324295.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222865729|gb|EEF02860.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1200
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 119/438 (27%), Positives = 190/438 (43%), Gaps = 62/438 (14%)
Query: 469 EPPLLMQVRLFYNGTAVKGTL-LLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVV 527
+PP Q+R Y G KG + K + +RPSM K +++ +LE+
Sbjct: 613 DPPCAYQIR--YAG--CKGVVACWPGKGDGVRLSLRPSMNKFQSNH--------TTLEIC 660
Query: 528 K-TSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGG 586
T QP +L+R +I LLS VP+ F + + +F N A V
Sbjct: 661 SWTRFQP--GFLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDV-LTASC 717
Query: 587 MDYDFTSARMILSGISLD-EPYLQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTG 644
D +A M+ +G D EP+L+ L+ + + L + ++ V +LMG +D G
Sbjct: 718 ADQGNVAAIMLSAGFKPDREPHLRGMLTCVRAAQLWDLREKTRIFVPSGRWLMGCLDELG 777
Query: 645 ILKSNEVCI----------ILKDG----------QVSWEKVLVYRNPGLHFGDIHVLKAT 684
+L+ + I +K G QV V++ +NP LH GD+ VL+A
Sbjct: 778 MLEQGQCFIQVSNSSLEKCFMKHGAKFSEAEKNLQVIKGTVVIAKNPCLHPGDVRVLEAV 837
Query: 685 YVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMS 744
V L + FP G R +E +G D DGD+YFV+ + L+ K S W+
Sbjct: 838 DVPGLHHLYD----CLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKRS--WIP 891
Query: 745 TSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESA 804
+ + K L + E F AK++ D A+ + + D S
Sbjct: 892 MQYDAAEAKLLARPVNHQDIIEFF------------AKNMVNDNLGAICNAHVVHADLS- 938
Query: 805 EEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVL 864
E A +N L L + A+D P K+G V +P LK + +P +M ++E S++S +L
Sbjct: 939 -EYGATDKNCLTLAELAATAVDFP-KTGKVVSMPPYLKPKMYPDFMGKEEYQSYKSEKIL 996
Query: 865 GTIYNTVKSYEAVDRSVT 882
G +Y +K +A D V
Sbjct: 997 GRLYRQIK--DAYDEDVA 1012
>gi|357119219|ref|XP_003561343.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2-like
[Brachypodium distachyon]
Length = 1208
Score = 107 bits (268), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 107/402 (26%), Positives = 182/402 (45%), Gaps = 56/402 (13%)
Query: 500 IQIRPSMIKVKADRDLSDGQTFNSLEVVK-TSNQPRKTYLSRNLIALLSYGGVPEIFFLD 558
+ +RPSM K ++ + LEVV T QP +L+R +I LLS V + F
Sbjct: 653 LSLRPSMKKFESKHSV--------LEVVSWTRFQP--GFLNRQIILLLSSLNVSDDIFSQ 702
Query: 559 ILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLD-EPYLQHRL-SILM 616
+ + L + + + A +V + T+A M+ +G EP+L+ L +I
Sbjct: 703 MQESMLFNLNKILLDSDVAFEV-VTTSCAEQGNTAALMLSAGFGPGTEPHLRGMLLAIRS 761
Query: 617 KEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEV-----------CIILKDGQVSWEK- 664
+ + L+ ++ V + +LMG +D G+L+ + C + + S K
Sbjct: 762 AQLQDLLEKTRIFVPKGRWLMGCLDELGVLEQGQCFVQASAASLDRCFLKHGSRFSANKN 821
Query: 665 -------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGG 717
V++ +NP LH GD+ +L+A V EL V + FP G R +E +G
Sbjct: 822 TDIIVGTVVIAKNPCLHPGDVRILEAVDVPELHHLVD----CLVFPQKGERPHPNEASGS 877
Query: 718 DFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFC 777
D DGD+YFV+ + +L+ K+S M S A ++ S ++ K +N
Sbjct: 878 DLDGDLYFVTWDEKLVPPGKKSWNPMDYSPA-EAKQQQRQVSQHDIVDFFLKNMVNENLG 936
Query: 778 P-SNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVE 836
P NA + AD E AM E +RL + A+D PK +G V
Sbjct: 937 PICNAHVVHADL----------------SEYGAMDEKCIRLAELAATAVDFPK-TGKLVT 979
Query: 837 VPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVD 878
+P +L+ + +P +M ++ES S++S +LG +Y +++ D
Sbjct: 980 MPPELRPKIYPDFMLKEESRSYKSEKILGRLYRSIQEASGGD 1021
>gi|18656898|gb|AAL78034.1|AF468822_2 putative RNA-dependent RNA polymerase RDP-1 [Diaporthe perjuncta]
Length = 1484
Score = 107 bits (268), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 159/708 (22%), Positives = 277/708 (39%), Gaps = 141/708 (19%)
Query: 210 EDRRMSLKWDSGKTHMYHCHIS----TKGNCTFKGPYLNQTRTHLQRELGD--DNILLVK 263
+D R+ W + + Y + T FK P + T + R+ D D L V+
Sbjct: 532 DDPRILHYWPNARIPPYATLVRRAVITPTTIYFKTPCVELT-NRILRKYSDLNDRFLRVQ 590
Query: 264 FDEELG-----GHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPST 318
F +E+ + SN ++ Y++ + + + G+++G R Y F F S
Sbjct: 591 FTDEVTFGKIFSSQDSNKDDNLYTRVHRVMQNGVIIGDRHYKFLAF------------SN 638
Query: 319 SPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTM 378
S + E+ AF ++ T R R + SV + +R+ + T
Sbjct: 639 SQFR------ENGAFFFCETDHV----TCASIRNWMGDFRHIRSVGKFAARMGQCFTTTR 688
Query: 379 KLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIH-TDGTGFISEDLALKCPTYVYKEK 437
++ + I+I +I + G++ + G+ + + TDG G IS V+
Sbjct: 689 QV----NGISIPKIR------QIGDIQRRSGDNIWNFTDGVGKIS----------VF--- 725
Query: 438 CTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPP 497
F+ + +E E P Q+R+ KG +++ +P
Sbjct: 726 -------------------FARMIASERDLPETPSCFQMRM----GGCKGVVVVWPDIPA 762
Query: 498 QTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFL 557
+ IRPS K KA +N LE++KTS T L++ +I +L GV + F+
Sbjct: 763 NEVHIRPSQEKFKA--------VYNGLEIIKTSTFAHAT-LNKQVIPVLIALGVDDAVFV 813
Query: 558 DILRNALDDARGVFSNKRNALKV-SFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILM 616
+L + L + ++ A ++ T A M+ + + +EP+L L +
Sbjct: 814 RMLDDELKEYDEALADSMKAGELLRSQVDENQTTLTMAEMVDTFMDSEEPFLWTLLRLWK 873
Query: 617 KEEKKSL-QAGKLPVTESYYLMGTVDPTGILKSN--------------------EVCIIL 655
K L Q + V S + G VD TG+L+ + +V I
Sbjct: 874 CWVLKRLKQKFAISVKNSAMIFGVVDETGVLRGHSQDTEGKGFNNIESLPQIFLQVPIEG 933
Query: 656 KDGQ--VSWEKV----LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRS 709
DG+ ++E + +V RNP LH GD+ V++A V EL K + FP G R
Sbjct: 934 SDGKSTTNYEVITGICVVGRNPALHPGDVRVVEAVDVPELRHL----KNVVVFPKTGDRD 989
Query: 710 LADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRL--IDFSLEELESEL 767
+ +GGD DGD YFV + L+ W + A+ +D + ++
Sbjct: 990 VPSMCSGGDMDGDDYFVYWDERLI-----PSEWDHPPLDHDADSSTPGLDSPADVTNGDV 1044
Query: 768 FKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDA 827
+ F A+ + D + D+ A + L ++ A+D
Sbjct: 1045 TRFF---------AQYMKNDSLGRIATAHFAQADQLA--GGVKHPKCIELAKLHSKAVDY 1093
Query: 828 PKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYE 875
KSG + L+ +P +M RD+ S+ S LG IY+ +K E
Sbjct: 1094 -IKSGKPAVMKRHLQPRNWPHWMERDKKSSYHSRGALGQIYDRIKIEE 1140
>gi|340975703|gb|EGS22818.1| RNA-directed RNA polymerase-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 1626
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 117/449 (26%), Positives = 193/449 (42%), Gaps = 82/449 (18%)
Query: 484 AVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLI 543
KG L+ + IRPS K A+ FN LE+++ S+ T L+R I
Sbjct: 768 GCKGVLVTWPDAKGTEVHIRPSQEKFSAE--------FNGLEIIRCSHFSCAT-LNRQTI 818
Query: 544 ALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTS---ARMILSG 600
+LS GVP FLD++ L + + A+ + Y +D + T+ + M+L G
Sbjct: 819 TILSCLGVPSYVFLDMMEEQLANYDAAMEDPDKAIDLLTTY--VDENMTTLTMSEMVLDG 876
Query: 601 -ISLDEPYLQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKSN--------- 649
+ EP+++ L + K+L + +L V + +++G VD TG L+ +
Sbjct: 877 FMETREPFVRSLLQLWRAWSIKALKEKARLVVKKGAFVLGCVDETGTLRGHSRATEGTKN 936
Query: 650 -----------EVCIILKDGQ------VSWEKVLVYRNPGLHFGDIHVLKATYVKELEDF 692
++ + + D + V LV RNP LH GDI +++A V +L
Sbjct: 937 QPKEVRRDQLPQIFLQVPDHENGGTYKVITGLCLVGRNPSLHPGDIRMVEAVDVPQLRHL 996
Query: 693 VGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSAN 752
+ + FP G R + +GGD DGD YFV + +L + W N A
Sbjct: 997 ----RDVVVFPLQGDRDVPSMCSGGDLDGDDYFVIWDEKLF-----PKEWSYPPMNYEAP 1047
Query: 753 KRLIDFSLEELE-------SELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAE 805
K + EE E +E F LF+ P A + L D+ E
Sbjct: 1048 K-----APEEKEVMVANNLAEFFVLFMKNDRLPLIAHA------------HLATADKHPE 1090
Query: 806 EKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLG 865
A E L L ++ A+D K+G+ + + L +P +M + + ++ S SVLG
Sbjct: 1091 --GAKTEKCLELAQLHSTAVDY-VKTGVAAKWEKRLDPRTYPHFMEKSRARTYYSKSVLG 1147
Query: 866 TIYNTVKSYEAVDRSVTEIWKLPCFDDGV 894
+Y+ V+ + D + E +KLP FD+ +
Sbjct: 1148 QLYDMVER-QVFD--IQENYKLP-FDERI 1172
>gi|336264581|ref|XP_003347067.1| hypothetical protein SMAC_05269 [Sordaria macrospora k-hell]
gi|380093080|emb|CCC09317.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1703
Score = 107 bits (267), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 167/666 (25%), Positives = 263/666 (39%), Gaps = 138/666 (20%)
Query: 238 FKGPYLNQT-RTHLQRELGDDNILLVKFDEEL--GGHRSSNNWNDSYSKYNEIAREGILV 294
F PY+ T R Q D + ++F +E+ G RS + + + +EGI +
Sbjct: 546 FSTPYVEPTNRVIRQWRFAQDYFIRIQFTDEVLEGRIRSGEAELPLFLRAYRVLQEGIAM 605
Query: 295 GLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMF 354
GL + F F + E Y +S DM ++ G+ F
Sbjct: 606 GLWHWKFLAFGNSQIRE---------AGAYMFCEQSDLTCDMMRSWM--GR--------F 646
Query: 355 MHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIH 414
H++ + A Y +RL S T + I RI P +KDG
Sbjct: 647 SHIKVI---AKYAARLGQCFSTTRLV----PGIPAPRIVTIPDVEKDG---------FCF 690
Query: 415 TDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLM 474
TDG G IS LA K T+ E S+DR P
Sbjct: 691 TDGVGKISPLLA-KIITH------------EWSLDRL-------------------PSAF 718
Query: 475 QVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPR 534
Q R+ KG L+ + + IR S K A+ FN LEV+K S
Sbjct: 719 QFRM----GGCKGVLVTWPDVKGMEVHIRKSQEKFVAE--------FNGLEVIKCSAFAT 766
Query: 535 KTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTS- 593
T L+R IA+LS GVP+ F+D++ L D +KR A + Y +D + +
Sbjct: 767 AT-LNRQTIAVLSSLGVPDQVFVDMMEKQLSDYNAAMVDKRKATEYLRKY--VDENHITP 823
Query: 594 --ARMILSG-ISLDEPYLQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKSN 649
A+M+ G + EP+++ L + K+L + +L V +S +++G VD + LK +
Sbjct: 824 IIAQMLSYGFMESQEPFVRTLLQLWRSWSIKTLKEKARLSVEKSAFVLGCVDESRTLKGH 883
Query: 650 ----------------EVCIILKDGQVSWEKVL-----VYRNPGLHFGDIHVLKATYVKE 688
++ + + D KV+ V RNP LH GDI V++A V
Sbjct: 884 MKVIEGWKDVPSEKLPQIFLQIPDNVNDGYKVITGTCVVGRNPSLHPGDIRVVEAVDVPA 943
Query: 689 LEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKN 748
L + + FP G R + +GGD DGD +FV +P L+ + ER S
Sbjct: 944 LRHI----RDVVVFPLTGDRDVPSMCSGGDLDGDDFFVIWDPLLVPN----ER----SHP 991
Query: 749 LSANKRLI--DFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEE 806
N+ ++ + + E + L F+ + N L A A D AE
Sbjct: 992 PMINEPVVGKELANEPTVNNLVTFFV--LYMKHNNLPLIAHAHMATAD---------AEM 1040
Query: 807 KAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGT 866
L L ++ A+D K+G+ P+ L + +P +M + + + S + LG
Sbjct: 1041 DGVKSSKCLELAILHSMAVDY-VKTGVPAVFPKRLDPKSWPHFMEKKKR-DYHSATALGK 1098
Query: 867 IYNTVK 872
+Y+ VK
Sbjct: 1099 LYDMVK 1104
>gi|449518949|ref|XP_004166498.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cucumis sativus]
Length = 1117
Score = 107 bits (266), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 116/430 (26%), Positives = 192/430 (44%), Gaps = 63/430 (14%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P Q+R Y G KG + +++ + + +R SM+K ++ + L V K
Sbjct: 570 PSAFQIR--YGG--YKGVIAVDRN-SFRKLSLRDSMLKFESKNKM--------LNVTKCC 616
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYD 590
+ YL+R + LLS GV + F + + L + + ++K AL V N+ G D +
Sbjct: 617 DS-MPCYLNREIATLLSTLGVKDESFEALQQEQLHLLKRMLTDKDVALNVLENFHGADSN 675
Query: 591 FTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAG-----KLPVTESYYLMGTVDPTGI 645
+M+ G EP ++ LS++++ +L + ++ V + L+G +D TGI
Sbjct: 676 NILVQMLNHGY---EPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKGRILLGCLDETGI 732
Query: 646 LKSNEV--CIILKDGQVS-----------------WEKVLVYRNPGLHFGDIHVLKATYV 686
L +V CI L ++ KV+V +NP LH GD+ VL+A +
Sbjct: 733 LNYGQVYACITLTKSELQNRNQNYFHTIDETKSILLGKVVVTKNPCLHPGDVRVLEAIFH 792
Query: 687 KELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTS 746
ELE+ + FP G R +E +GGD DGD+YF+S + L+ E+ +
Sbjct: 793 VELEEKGLVD--CLIFPQKGARPHTNECSGGDLDGDLYFISWDENLIPPKTEAPMDYTGR 850
Query: 747 KNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEE 806
+ + D LEE++ +N D A+ L D E
Sbjct: 851 RPRIMDH---DVKLEEIQKFFVDYMIN-------------DTLGAISTAHLVHADR--EP 892
Query: 807 KAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGT 866
K A+ L L ++ A+D K +G E+P LK +FP +M R + + S++VLG
Sbjct: 893 KKALSAKCLELAALHSMAVDFAK-TGAPAEMPRVLKPREFPDFMERFDKPMYISSNVLGK 951
Query: 867 IYN-TVKSYE 875
+Y VKS E
Sbjct: 952 LYRAAVKSIE 961
>gi|242093794|ref|XP_002437387.1| hypothetical protein SORBIDRAFT_10g025970 [Sorghum bicolor]
gi|241915610|gb|EER88754.1| hypothetical protein SORBIDRAFT_10g025970 [Sorghum bicolor]
Length = 1251
Score = 107 bits (266), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 108/406 (26%), Positives = 187/406 (46%), Gaps = 72/406 (17%)
Query: 498 QTIQIRPSMIKVKADRDLSDGQTFNSLEVVK-TSNQPRKTYLSRNLIALLSYGGVPEIFF 556
+ + +RPSM K ++ + +EVV T QP +L+R +I LL+ GVP+ F
Sbjct: 716 RMMSLRPSMRKFESVHPV--------IEVVSWTKFQP--AFLNRQIITLLTSLGVPDDVF 765
Query: 557 LDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGIS-LDEPYLQHRL-SI 614
+ L + + + SN A K+ ++ T+ M+ +G + EP+L+ L +I
Sbjct: 766 WQMQEAMLGNLKRILSNTDVAYKI-VTSSCPEHGSTAGLMLTAGFAPATEPHLRAMLLAI 824
Query: 615 LMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCII-----------LKDGQVSWE 663
+ K L + V + +LMG +D GIL+ + C I + G +S
Sbjct: 825 CASQMKGLLDKTWIFVPKGRWLMGCLDELGILEQGQ-CFIRVSTPSLNNHYMNRGSISPS 883
Query: 664 K-----------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLAD 712
+ V++ +NP LH GD+ +L+A V EL V + FP G R ++
Sbjct: 884 EYKNNAEIIVGTVVMAKNPCLHPGDVRILEAVDVPELHHLVD----CLVFPKKGERPHSN 939
Query: 713 EIAGGDFDGDMYFVSRNPELLKHFKESERWM----STSKNLS---ANKRLIDFSLEELES 765
E +G D DGD+YFV+ + L+ ++S M S SK L + IDF LE + +
Sbjct: 940 EASGSDLDGDVYFVTWDENLVPPGRKSCTPMDYSPSKSKQLPREVHQQDTIDFYLESMVN 999
Query: 766 ELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDAL 825
+ R C NA AD + AM + L + A+
Sbjct: 1000 DNLG-----RIC--NAHVAHAD----------------RSDDGAMDTKCVELAELAAIAV 1036
Query: 826 DAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTV 871
D+ K+G V++P L +++P +M +++++S++S +LG +Y ++
Sbjct: 1037 DS-AKTGEIVKMPPSLSPKEYPDFMGKEDAISYKSKKILGRLYRSI 1081
>gi|156045453|ref|XP_001589282.1| hypothetical protein SS1G_09915 [Sclerotinia sclerotiorum 1980]
gi|154694310|gb|EDN94048.1| hypothetical protein SS1G_09915 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1184
Score = 107 bits (266), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 135/533 (25%), Positives = 220/533 (41%), Gaps = 97/533 (18%)
Query: 220 SGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGDD-NILLVKFDEELGG--HRSSNN 276
S T + H T +GP L++ G N + V F +E GG +SN
Sbjct: 414 SQNTALVHRVTITPAGFYLEGPEAESNNRILRKYAGSHGNFVRVNFCDEDGGRIQYASNV 473
Query: 277 WNDSY--SKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFI 334
ND + I + G + + Y + G + S C+FV + F
Sbjct: 474 ANDEIFDGVFKNILKNGFSIASQKYEYL----GSSHSSLRTQS-----CWFV---APFFN 521
Query: 335 DMGYQYILSGKTVHEARYMFMHVRTVSSV---ANYMSRLSLILSKTMK-LEVDFSRINIE 390
GY H+A+++ + +++ A +R+ S T + +D + IE
Sbjct: 522 KEGY---------HDAQHIIHDLGNFTAIRSPAKCAARIGQAFSDTPNAITLDKRTVTIE 572
Query: 391 RIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDR 450
RI D V ++G + +DG G +SE L K EK N +
Sbjct: 573 RIPD----------VERNGR--VFSDGVGTMSESLMHKI-----WEKLPNKKFVK----- 610
Query: 451 KELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVK 510
P Q+R Y G KG + L+ +LP +++R SMIK
Sbjct: 611 --------------------PTCFQIR--YQGA--KGMISLDTRLPGDHLRLRESMIKF- 645
Query: 511 ADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGV 570
DG N LE+ + +P YL+R I +L GV +F+ + + R +
Sbjct: 646 ------DGSISNDLEICGGAYKPLSMYLNRQFIKILEDLGVEPEYFMKLQEKEVTRLRAI 699
Query: 571 FSNKRNALKVSFNYGGMDYDFTSARMIL---SGISLD---EPYLQHRLSILMKEEKKSLQ 624
+N NA +F D ++ S ++LD + +L+ L + + E ++L+
Sbjct: 700 TANTYNA--STFLERKRVGDVVLLPYLIEHCSYLNLDFRNDVFLRDVLEMAVLIELRTLK 757
Query: 625 -AGKLPVTESYYLMGTVDPTGILKSNEV-CIILKDGQ---VSWEKVLVYRNPGLHFGDIH 679
++PV + Y+L G +D TGILK E+ C L+DG+ + V++ R P LH GD+
Sbjct: 758 HKARIPVEKGYHLHGIMDETGILKEGEIYCCWLEDGKRTTLVQSSVVITRAPALHPGDVQ 817
Query: 680 VLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPEL 732
+ A V I F G R L +++GGD DGD+Y+V +PE+
Sbjct: 818 LANAVDVPSNSPLKRLYN-CICFSQKGARDLPSQLSGGDLDGDLYYVMFDPEM 869
>gi|449440690|ref|XP_004138117.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cucumis sativus]
gi|316989905|gb|ADU77018.1| RNA-dependent RNA polymerase 2 [Cucumis sativus]
Length = 1117
Score = 107 bits (266), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 116/430 (26%), Positives = 192/430 (44%), Gaps = 63/430 (14%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P Q+R Y G KG + +++ + + +R SM+K ++ + L V K
Sbjct: 570 PSAFQIR--YGG--YKGVIAVDRN-SFRKLSLRDSMLKFESKNKM--------LNVTKCC 616
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYD 590
+ YL+R + LLS GV + F + + L + + ++K AL V N+ G D +
Sbjct: 617 DS-MPCYLNREIATLLSTLGVKDESFEALQQEQLHLLKRMLTDKDVALNVLENFHGADSN 675
Query: 591 FTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAG-----KLPVTESYYLMGTVDPTGI 645
+M+ G EP ++ LS++++ +L + ++ V + L+G +D TGI
Sbjct: 676 NILVQMLNHGY---EPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKGRILLGCLDETGI 732
Query: 646 LKSNEV--CIILKDGQVSWE-----------------KVLVYRNPGLHFGDIHVLKATYV 686
L +V CI L ++ KV+V +NP LH GD+ VL+A +
Sbjct: 733 LNYGQVYACITLTKSELQSRNQNYFHTIDETKSILLGKVVVTKNPCLHPGDVRVLEAIFH 792
Query: 687 KELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTS 746
ELE+ + FP G R +E +GGD DGD+YF+S + L+ E+ +
Sbjct: 793 VELEEKGLVD--CLIFPQKGARPHTNECSGGDLDGDLYFISWDENLIPPKTEAPMDYTGR 850
Query: 747 KNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEE 806
+ + D LEE++ +N D A+ L D E
Sbjct: 851 RPRIMDH---DVKLEEIQKFFVDYMIN-------------DTLGAISTAHLVHADR--EP 892
Query: 807 KAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGT 866
K A+ L L ++ A+D K +G E+P LK +FP +M R + + S++VLG
Sbjct: 893 KKALSAKCLELAALHSMAVDFAK-TGAPAEMPRVLKPREFPDFMERFDKPMYISSNVLGK 951
Query: 867 IYN-TVKSYE 875
+Y VKS E
Sbjct: 952 LYRAAVKSIE 961
>gi|15237051|ref|NP_192851.1| RNA-dependent RNA polymerase 2 [Arabidopsis thaliana]
gi|75318859|sp|O82504.1|RDR2_ARATH RecName: Full=RNA-dependent RNA polymerase 2; Short=AtRDRP2; AltName:
Full=Protein SILENCING MOVEMENT DEFICIENT 1; AltName:
Full=RNA-directed RNA polymerase 2
gi|3600048|gb|AAC35535.1| similar to hypothetical proteins in Schizosaccharomyces pombe
(GB:Z98533) and C. elegans (GB:Z48334 and Z78419)
[Arabidopsis thaliana]
gi|4850292|emb|CAB43048.1| putative RNA-directed RNA polymerase [Arabidopsis thaliana]
gi|7267812|emb|CAB81214.1| putative RNA-directed RNA polymerase [Arabidopsis thaliana]
gi|332657576|gb|AEE82976.1| RNA-dependent RNA polymerase 2 [Arabidopsis thaliana]
Length = 1133
Score = 107 bits (266), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 184/770 (23%), Positives = 308/770 (40%), Gaps = 169/770 (21%)
Query: 281 YSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQY 340
Y++ I EGI VG + + F F S S ++ V M +S
Sbjct: 451 YNRVLSILGEGITVGPKRFEFLAF------------SASQLRGNSVWMFAS-------NE 491
Query: 341 ILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDK 400
+ + + E F +R++S A M +L +T+ + ++E+I D
Sbjct: 492 KVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQ----DVEQIPDIE---- 543
Query: 401 DGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDV 460
V DG +DG G IS A + +KC S V
Sbjct: 544 ----VTTDGADYCFSDGIGKISLAFAKQVA-----QKC-----------------GLSHV 577
Query: 461 ARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQT 520
P Q+R Y G KG + +++ + + +R SM+K ++
Sbjct: 578 ----------PSAFQIR--YGG--YKGVIAVDRS-SFRKLSLRDSMLKFDSN-------- 614
Query: 521 FNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFF-------LDILRNALDDARGVFSN 573
N + V + +L+R +I LLS G+ + F L +L N L+D
Sbjct: 615 -NRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSMLGNMLED------- 666
Query: 574 KRNALKVSFNYGGMDYDFTSARMILSGIS-LDEPYLQHRLSILMKEEKKSLQA-GKLPVT 631
+ AL V G + +M+L G + EPYL L + + + L++ ++ V
Sbjct: 667 RDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRILVP 726
Query: 632 ESYYLMGTVDPTGILKSNEVCI-------------------ILKDGQVSWEKVLVYRNPG 672
+ L+G +D GIL+ +V + I ++ V KV+V +NP
Sbjct: 727 KGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVVIGKVVVTKNPC 786
Query: 673 LHFGDIHVLKATYVKELEDFVGTSKY--AIFFPCNGPRSLADEIAGGDFDGDMYFVSRNP 730
LH GDI VL A Y E+ Y I FP G R +E +GGD DGD +FVS +
Sbjct: 787 LHPGDIRVLDAIYEVHFEE----KGYLDCIIFPQKGERPHPNECSGGDLDGDQFFVSWDE 842
Query: 731 ELLKHFKESERWMSTSKNLSANK-RLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCW 789
+++ SE M + + ++ RL+D + LE E+ K F++ + +D
Sbjct: 843 KIIP----SE--MDPPMDYAGSRPRLMDHDVT-LE-EIHKFFVDY---------MISDTL 885
Query: 790 QAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCY 849
+ L D E+ A + L L N++ A+D K +G E+P LK +FP +
Sbjct: 886 GVISTAHLVHADRDPEK--ARSQKCLELANLHSRAVDFAK-TGAPAEMPYALKPREFPDF 942
Query: 850 MRRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCFDDGVPEACMTKW----KGY 905
+ R E ++ S SV G +Y VKS A + E +D + EA + K +
Sbjct: 943 LERFEKPTYISESVFGKLYRAVKSSLAQRKPEAESEDTVAYDVTLEEAGFESFIETAKAH 1002
Query: 906 YDQYRWEMKEAIDKCTVEREEAAELVIEKYKQIL-------YGAAEFEQSTRTLEEIYNE 958
D Y ++ + EE I K K++ YG + ++ T ++++++ E
Sbjct: 1003 RDMYGEKLTSLMIYYGAANEEEILTGILKTKEMYLARDNRRYGDMK-DRITLSVKDLHKE 1061
Query: 959 AL------------------AIYNITYDLAASRRQVSYCSFAWRVAGSAL 990
A+ A Y +TY+ ++++ SF W V L
Sbjct: 1062 AMGWFEKSCEDEQQKKKLASAWYYVTYNPNHRDEKLTFLSFPWIVGDVLL 1111
>gi|156361828|ref|XP_001625486.1| predicted protein [Nematostella vectensis]
gi|156212322|gb|EDO33386.1| predicted protein [Nematostella vectensis]
Length = 531
Score = 106 bits (265), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 144/550 (26%), Positives = 233/550 (42%), Gaps = 102/550 (18%)
Query: 360 VSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKD-GNVVYK-----DGEALI 413
+ VA ++SR+ S T K V+ S N RIE P +K+ NV++ I
Sbjct: 11 IRCVAVFVSRMGQCFSSTKK-SVEVSLDNGVRIEKIPDVEKEYNNVLFPCCGNVRSGVYI 69
Query: 414 HTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLL 473
+DG G IS+DLA K +S+ + +E P
Sbjct: 70 FSDGIGKISKDLANK---------------VAKSLGLEAVEMF--------------PSA 100
Query: 474 MQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQP 533
Q+R Y G KG L ++ L + +Q R SM K ++ + +LE+ + S +P
Sbjct: 101 YQIR--YAGC--KGMLAVDPSLRGEVLQYRDSMKKFQS--------SHKALEICEPS-RP 147
Query: 534 RKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNAL----KVSFNYGGMDY 589
+ Y +R I LLS GVP+ F+ + L D + + +AL ++S GG+
Sbjct: 148 SELYFNRQCITLLSGLGVPDDEFIRLQDKMLMDLASMLLYETSALESLGRISIA-GGLKV 206
Query: 590 DFTSARMILSGISLD-EPYLQHRL-SILMKEEKKSLQAGKLPVTESY--YLMGTVDPTGI 645
SGI + EP+ + L +I L+ ++ + ES+ LMG +D TG
Sbjct: 207 SLIRH----SGIVVTCEPFFRSMLLAIYRSRLGDLLRRARIAIPESHGRLLMGVLDETGS 262
Query: 646 LKSNEVCI-----ILKDGQ---VSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSK 697
L EV I + GQ + V+V +NP H GD+ A + L V
Sbjct: 263 LDYGEVFIRYTTELGNPGQGYTILTGDVVVSKNPCFHPGDMRKFNAVDIPALYHLVD--- 319
Query: 698 YAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLID 757
I FP GPR DE++G D DGD YF + W+ N+ +D
Sbjct: 320 -CIVFPAKGPRPHTDEMSGSDLDGDKYFAT--------------WLRGIIPDRDNEPPMD 364
Query: 758 FSLEELESELFKLFLNTRFCPSNAKSLAADCWQ-----AVMDRFLTLGDESAEEKAAMKE 812
F + K LN S+ AD + + + L D +E+ +
Sbjct: 365 FYPPK------KKMLNRPIEVSDMIQFVADYIKNDQLGVIANAHLVHAD--SEQDGIFSD 416
Query: 813 NMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVK 872
++L +++ DA+D P K+G E+ ++L+ E++P +M + + + S +VLG ++
Sbjct: 417 KCIKLAHMHSDAVDFP-KTGECPELTKELRPEQYPDFMMKPDKPRYVSHNVLGKLFQKCN 475
Query: 873 SYEAVDRSVT 882
S E R +T
Sbjct: 476 SLERARRFMT 485
>gi|392571578|gb|EIW64750.1| RdRP-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 1224
Score = 106 bits (264), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 114/428 (26%), Positives = 195/428 (45%), Gaps = 50/428 (11%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P Q+R + G+ KG L ++ LP ++I IRPSMIK ++ ++EV +
Sbjct: 630 PRAYQIR--FQGS--KGMLSVDYTLPGRSILIRPSMIKFESPDS-------RNIEVARAF 678
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYG-GMDY 589
+P YL+R LI LL GVP F + NA+ D + + + ++ +G G +
Sbjct: 679 EKPAPYYLNRPLIMLLEGLGVPYEVFQRLQDNAVRDVKAAVESLERSARLLEGHGLGGSF 738
Query: 590 DFTSARMILSGISL----DEPYLQHRLSILMKEEKKSLQA-GKLPVTESYYLMGTVDPTG 644
TS + L + L +E + + + + + L+ ++PV E + L+G D G
Sbjct: 739 RLTSVMLGLHKLGLGPLNNEVFWRQTMDFAINHVLRELKHRARIPVPEGWTLVGVADVHG 798
Query: 645 ILKSNE--VCIILKD-GQVSW--EKVLVYRNPGLHFGDIHVLKAT-YVKELEDFVGTS-K 697
L+ E VCI D G + + + L+ R+P +H GD V+ A + F S +
Sbjct: 799 YLEEGEIFVCIDAPDRGGLRYLEGRTLISRSPTIHPGDAQVVHAIGRPRPGSPFSMESLR 858
Query: 698 YAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL--KHFKESERWMSTSKNLSANKRL 755
+ F G R L + GGD DGD Y V+ PELL + F +E + K + +
Sbjct: 859 NTVVFSIKGKRPLPSCLGGGDLDGDEYNVTSMPELLPPRTFYAAEYKATPRKLVDHESTM 918
Query: 756 IDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENML 815
+D +E ++N S+ + A W L + D+S E + + L
Sbjct: 919 VDV------AEFVAEYIN-----SDTLGIIAITW-------LIIADQSTE--GILDPDCL 958
Query: 816 RLINIYYDALDAPKKSGIKVEVPE--DLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKS 873
+L ++ DA+D P KSG V + L+ + P + E++S ++ S Y +V++
Sbjct: 959 KLAALHSDAVDYP-KSGQPVPIQHIPRLQFARKPDW-NAPETMSIDTLSESPRFYESVRA 1016
Query: 874 YEAVDRSV 881
+ RS+
Sbjct: 1017 IGKLYRSI 1024
>gi|115402503|ref|XP_001217328.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114189174|gb|EAU30874.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 1309
Score = 105 bits (263), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 150/652 (23%), Positives = 253/652 (38%), Gaps = 138/652 (21%)
Query: 257 DNILLVKF-DEELGGH---RSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEK 312
D L V+F DE+L G + N ++ +++ GI++G R Y F F +
Sbjct: 480 DRFLRVRFTDEKLLGRIYSTTDNTMDEVFTRVKRALANGIVIGDRRYEFLAFGN------ 533
Query: 313 KKDPSTSPVKCYFVRMESSAFIDMGYQYI--LSGKTVHEARYMFMHVRTVSSVANYMSRL 370
S F + G + L T R H + +VA + +RL
Sbjct: 534 ------------------SQFREHGAYFFAPLPNLTAANIRAWMGHFDDIRNVAKHAARL 575
Query: 371 SLILSKTMKLEVDFS-RINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKC 429
S T + F I ++ I+D + ++G +DG G IS+ LA
Sbjct: 576 GQCFSTTRAI---FGCPIKVQEIDD----------IVRNGYRF--SDGVGRISKFLA--- 617
Query: 430 PTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTL 489
+ EL + ++ GEPP + Q RL KG L
Sbjct: 618 -----------------QMVMSEL--------KIKTPSGEPPSVFQFRL----GGCKGIL 648
Query: 490 LLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYG 549
++ + Q + IR S K A T N LE+++ S Q L+R LI +LS
Sbjct: 649 TVSPQAQRQEVHIRKSQAKFTA--------THNGLEIIRWS-QFTAASLNRQLIIVLSTL 699
Query: 550 GVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDY-DFTSARMILSGIS-LDEPY 607
G+ + F + LR L N A+ + Y + T ++M++ G +EP+
Sbjct: 700 GIRDRIFHEKLRAVLWGLNEALKNDAKAIHLLRRYVDPNQRTLTISQMVVDGFRRTEEPF 759
Query: 608 LQHRLSILMKEEKKSLQ-AGKLPVTESYYLMGTVDPTGILKS------------------ 648
L++ K L+ K+ + + + G +D TG LK
Sbjct: 760 ATSVLTLWRAWHLKYLKDKAKITIDKGACVFGCMDETGTLKGYFHEKIPDRDAPFEQRFA 819
Query: 649 --NEVCIIL--KDGQVSWEKV----LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAI 700
E+ + + +D +E + ++ RNP LH GDI V+KA V L + +
Sbjct: 820 ALPEIFLQIPNQDKGGKYEVIQGMCILARNPSLHSGDIRVVKAVDVPALRHL----QDVV 875
Query: 701 FFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSL 760
P G R +A +GGD DGD Y V + +L+ + W N + NK D
Sbjct: 876 VLPQTGDRDIASMCSGGDLDGDDYVVIWDQDLI-----PKDWFRPPMNYTTNKAR-DLDR 929
Query: 761 EELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINI 820
+ E+ F+ + DC + L D + +E +RL +
Sbjct: 930 DVTVDEITSFFVTY---------MKNDCLPTIAHAHLAWADRL--DNGVDEEKCIRLAQL 978
Query: 821 YYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVK 872
+ DA+D K+G + +L+ + +P +M + ++S +LG +Y+ V+
Sbjct: 979 HSDAVDY-NKNGTPAHMTRNLEPKLWPHFMEKKTEKVYKSGKILGQLYDAVE 1029
>gi|111610628|gb|ABH11712.1| RNA-dependent RNA polymerase [Tetrahymena thermophila]
Length = 1434
Score = 105 bits (263), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 142/535 (26%), Positives = 240/535 (44%), Gaps = 102/535 (19%)
Query: 386 RINIERIED--EPCR----DKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCT 439
R NIE I+D P D +GN+ Y + + TDG G IS+DL K +
Sbjct: 682 RPNIEFIDDITTPSAVQEVDANGNICYFRQKKKVFTDGIGTISQDLIRKISDH------- 734
Query: 440 NDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQ- 498
L A F +QVR Y G KG L ++ K +
Sbjct: 735 -------------LNAFFM-------------CAIQVR--YGGA--KGVLTIDYKSDKKN 764
Query: 499 TIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLD 558
TIQ+R SMIK K ++D Q ++++ N+ R YL+R +I LL G+ F+
Sbjct: 765 TIQLRESMIKYK----ITDEQDELIIDIL-DRNKYRFGYLNRQVIILLRSLGIENEQFIQ 819
Query: 559 ILRNALDDARGVFSNKRNALKVS--FNYGGMDYDFTSARMI-LSGI--SLDEPYLQHRLS 613
+ +++ ++ALK + F DY R+ ++ + S+ +
Sbjct: 820 AQQEYIEELN------KSALKDASIFTLFNTDYSKDGTRLFPITHLLRSMQTSRIDMAQD 873
Query: 614 ILMKEEKKSLQA---------GKLPVTESYYLMGTVDPTGILKSNEV-CIILKDGQVSWE 663
I K +L+ + + +S LMG +D +L+ +EV I +D + S+
Sbjct: 874 IFCKGVIHTLKKRGFYILRKKSNIFLKKSARLMGVIDEYNVLEQDEVFAYISQDSEKSFF 933
Query: 664 KV----LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIF--------FPCNGPRSLA 711
+V +V +NP LH GDI LKA ++ + +G K F FP G +
Sbjct: 934 QVEGDVIVVKNPCLHPGDIRKLKAVTLETISQRLGEGKINPFKKLRNILIFPQKGKEPIT 993
Query: 712 DEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLF 771
+IAG D DGD YF+ + + ++ E + + S K++ S E+ + E+ K
Sbjct: 994 SQIAGSDLDGDCYFICWDQRFIP-LEQKEPFNYDEDDNSQKKQI---SQEQYDIEISKK- 1048
Query: 772 LNTRFCPSNAKSLAADCWQAVMDRFL------TLG--DES----AEEKAAMKEN--MLRL 817
NT+F N D + ++D F+ LG D S A++ E+ L+L
Sbjct: 1049 PNTQFKTKNPVREVIDDNEQMLDFFIDFINNENLGKIDNSHLVFADKSPLYAEDPKCLKL 1108
Query: 818 INIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVK 872
+++ A+D K +GI ++P++L ++++P +M +D+ S++S S+LG +Y VK
Sbjct: 1109 ASLHAQAVDYAK-TGISPQLPKNLAIKEYPDFMEKDDKPSYQSQSILGILYRQVK 1162
>gi|197223666|gb|ACH53361.1| RNA-directed RNA polymerase 1b [Hordeum vulgare]
Length = 1115
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 160/686 (23%), Positives = 279/686 (40%), Gaps = 124/686 (18%)
Query: 219 DSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGD-DNILLVKF-DEELGGHRSS-- 274
D G ++Y I T F GP +N + ++ D DN L + F DE+ RS+
Sbjct: 365 DDGLVYVYRVQI-TPAKVYFYGPEINVSNRVVRNYAADLDNFLRISFVDEDCEKLRSTDL 423
Query: 275 -------NNWNDS--YSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYF 325
NN + Y++ + GI +G + + F F S+S ++
Sbjct: 424 SQRSAPGNNTRRTALYNRVLSVLSNGITIGDKHFDFLAF------------SSSQLR--- 468
Query: 326 VRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFS 385
++SA++ G + + R + R + +VA Y +RL S + +
Sbjct: 469 ---DNSAWMFASR----PGLSASDIREWMGNFRNIRNVAKYAARLGQSFSSSTE------ 515
Query: 386 RINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTE 445
+ + + E + D +G + +DG G IS D A + +KC T
Sbjct: 516 TLKVHKYEVKEAPD------VTNGTEYVFSDGIGTISADFADEV-----SKKCNLTRFT- 563
Query: 446 RSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPS 505
P Q+R Y G KG + ++ + +R S
Sbjct: 564 -------------------------PSAFQIR--YGG--YKGVVAIDPT-SQWKLSLRKS 593
Query: 506 MIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALD 565
M K + SD T + L K QP +L+R LI LLS GV + F + A+
Sbjct: 594 MSKFQ-----SDNITLDVLAYSKY--QP--CFLNRQLITLLSTLGVIDSIFELKQQEAVQ 644
Query: 566 DARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLD-EPYLQHRLSILMKEEKKSLQ 624
+ + + A+ + ++L G D EPY+ L + L+
Sbjct: 645 QLNRMVAEPQAAIDAIELMPMGEITNIVKELLLCGYRPDVEPYVSMLLQTFRASKLLELK 704
Query: 625 A-GKLPVTESYYLMGTVDPTGILKSNEVCIILKDG------QVSWEKVLVYRNPGLHFGD 677
++ V + +MG +D T LK +V I + V KV+V +NP +H GD
Sbjct: 705 TRSRIFVPKGRAMMGCLDETRTLKYGQVFIQASNSADDRGKSVVTGKVIVAKNPCIHPGD 764
Query: 678 IHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFK 737
I +L+A + L V + FP GPR +E +G D DGD+YFVS +P+L+
Sbjct: 765 IRILQAVHSPLLGHMVN----CVVFPQLGPRPHPNECSGSDLDGDIYFVSWDPDLI---- 816
Query: 738 ESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFL 797
R ++ A +D + + E+ + F N + + + + A+ DR
Sbjct: 817 -PTRMVAPMDYTPAPTETLDHDV--MIEEVHEYFTN--YIVNESLGIIANAHVVFADR-Q 870
Query: 798 TLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVS 857
+L ES + ++L ++ A+D P K+G+ ++P +L V+++P +M + + +
Sbjct: 871 SLKAESTQ--------CIKLAELFSIAVDYP-KTGVPAQIPHELHVKEYPDFMEKLDRAT 921
Query: 858 FESTSVLGTIYNTVKSYEAVDRSVTE 883
+ S V+G +Y +K R T+
Sbjct: 922 YVSEGVIGKLYREIKKQNPHIRHFTK 947
>gi|171685025|ref|XP_001907454.1| hypothetical protein [Podospora anserina S mat+]
gi|170942473|emb|CAP68125.1| unnamed protein product [Podospora anserina S mat+]
Length = 1493
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 112/437 (25%), Positives = 187/437 (42%), Gaps = 81/437 (18%)
Query: 470 PPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKT 529
PP Q R+ KG L+ K + IRPS K A +N LEVV+
Sbjct: 719 PPSAYQFRM----GGCKGVLVGWKHAKGTEVHIRPSQEKFSA--------AYNGLEVVRC 766
Query: 530 SNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDY 589
S+ T L+R I +LS GVP+ F+D++R L ++ ++A+ + ++ +D
Sbjct: 767 SSFSCAT-LNRQTITILSSLGVPDHVFVDLMREQLSRFDRAMTDGKSAVDMLTSF--VDE 823
Query: 590 DFTS---ARMILSG-ISLDEPYLQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTG 644
+ T+ ARMI SG + +EP+++ L + K+L + +L V + +++G VD TG
Sbjct: 824 NMTTVSIARMIKSGFMDSNEPFVKTVLQLWRAWSLKTLKEKARLAVEKGAFVLGCVDETG 883
Query: 645 ILKSNE------------------VCIILKDGQVSWEKV----LVYRNPGLHFGDIHVLK 682
L+ + + I +D ++ + ++ RNP LH GDI V++
Sbjct: 884 TLRGHSKATEGRQRIRRDQLPQIFLQIPDRDDPSGYKAIAGLCIIGRNPSLHPGDIRVVE 943
Query: 683 ATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERW 742
A V L + + FP G R + +GGD DGD +FV + +LL W
Sbjct: 944 AVDVPALRHL----RDVVVFPLEGDRDVPSMCSGGDLDGDDFFVIWDEKLL-----PTEW 994
Query: 743 MSTSKNLSANKRLIDFS----LEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLT 798
+ + + S +E L S F LF+ P A +
Sbjct: 995 SHPPMDHTPQPPVTSDSKKSIMESLAS-FFVLFMKNDRLPFIAHA--------------H 1039
Query: 799 LGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSF 858
L AE + A E L+L + +G+ E + L +P +M R + S+
Sbjct: 1040 LATADAEPQGAKSEKCLKLAEM----------TGVPAEWSKKLNPRSWPHFMERQKG-SY 1088
Query: 859 ESTSVLGTIYNTVKSYE 875
S + LG +Y+ V + +
Sbjct: 1089 HSKTALGQLYDMVHTQD 1105
>gi|169595008|ref|XP_001790928.1| hypothetical protein SNOG_00237 [Phaeosphaeria nodorum SN15]
gi|111070612|gb|EAT91732.1| hypothetical protein SNOG_00237 [Phaeosphaeria nodorum SN15]
Length = 1523
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 147/654 (22%), Positives = 252/654 (38%), Gaps = 157/654 (24%)
Query: 257 DNILLVKFDEEL--GGHRSSNNW--NDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEK 312
D L VKF +E G RS N + ++ + + GI+V R Y F F + E
Sbjct: 637 DRFLRVKFSDEKTEGVLRSIPNGKADATFDRVRRAMKNGIVVAGRYYEFLAFGNSQFREH 696
Query: 313 KKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSL 372
YF S+ S + + F H++TV A + +RL
Sbjct: 697 G---------AYFYAPTSTK----------SADDIRSSLGRFDHIKTV---AKFGARLGQ 734
Query: 373 ILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTY 432
S T + V + + I IE ++G TDG G +S LA
Sbjct: 735 CFSTTRAMRVKVTIVKIPDIE-------------RNGYCF--TDGVGKLSLFLAQMAAQ- 778
Query: 433 VYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLN 492
E S+ + +PP L Q RL KG L L+
Sbjct: 779 ---------------------ELGLSNA------FDDPPSLYQFRL----GGCKGVLALD 807
Query: 493 KKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVP 552
K+ + IRPS +K +A F LE++++S + +R +I +LS GVP
Sbjct: 808 PKITGNEVHIRPSQLKFEA--------KFLGLEIIRSSALA-TPFFNRQIIVVLSDLGVP 858
Query: 553 EIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDY-DFTSARMILSG-ISLDEPYLQH 610
+ + + ++D ++K A+ + M+ T A M++ G + EP++
Sbjct: 859 DNVLIQKQQEMVNDYEQAMTDKDTAIAKLRKHIDMNQTTLTMAGMVIDGFMESREPFMMS 918
Query: 611 RLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKSN-------------------- 649
L + K+L + ++ + + +++G VD +G LK +
Sbjct: 919 LLRLWRAATIKNLKEKARIAIEDGAFVLGCVDESGTLKGHLNDPQSRSDASRQDKMQTLP 978
Query: 650 EVCIILKDGQVSWEK--------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIF 701
E+ + + D + + ++ RNP LH GD+ V++A V L K +
Sbjct: 979 EIFLQVDDTEANKRGHYKIVKGVCVLARNPSLHPGDLRVVRAVDVPALHHL----KNVVV 1034
Query: 702 FPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLE 761
P G R LA+ +GGD DGD Y V + +L+ +L
Sbjct: 1035 LPQTGDRDLANMCSGGDLDGDDYMVLWDKDLIPEL---------------------ITLS 1073
Query: 762 ELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIY 821
++ S+ F ++ D + L D + E L L ++
Sbjct: 1074 DI-SDFFVTYMQN------------DSLGQIAYAHLAQADVNHE--GVGSGTCLELAKLH 1118
Query: 822 YDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVS---FESTSVLGTIYNTVK 872
A+D P KSGI ++ +DL+ +++P +M + + + ST VLG +Y+ V+
Sbjct: 1119 SQAVDYP-KSGIPAQMSQDLRPKRWPHFMEKKHLQAHKIYRSTRVLGKLYDQVE 1171
>gi|40794965|gb|AAR91036.1| RNA-directed RNA polymerase 1 [Hordeum vulgare subsp. vulgare]
Length = 1115
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 160/686 (23%), Positives = 279/686 (40%), Gaps = 124/686 (18%)
Query: 219 DSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGD-DNILLVKF-DEELGGHRSS-- 274
D G ++Y I T F GP +N + ++ D DN L + F DE+ RS+
Sbjct: 365 DDGLVYVYRVQI-TPAKVYFYGPEINVSNRVVRNYAADLDNFLRISFVDEDCEKLRSTDL 423
Query: 275 -------NNWNDS--YSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYF 325
NN + Y++ + GI +G + + F F S+S ++
Sbjct: 424 SQRSAPGNNTRRTALYNRVLSVLSNGITIGDKHFDFLAF------------SSSQLR--- 468
Query: 326 VRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFS 385
++SA++ G + + R + R + +VA Y +RL S + +
Sbjct: 469 ---DNSAWMFASR----PGLSASDIREWMGNFRNIRNVAKYAARLGQSFSSSTE------ 515
Query: 386 RINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTE 445
+ + + E + D +G + +DG G IS D A + +KC T
Sbjct: 516 TLKVHKYEVKEAPD------VTNGTEYVFSDGIGTISADFADEV-----SKKCNLTRFT- 563
Query: 446 RSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPS 505
P Q+R Y G KG + ++ + +R S
Sbjct: 564 -------------------------PSAFQIR--YGG--YKGVVAIDPT-SQWKLSLRKS 593
Query: 506 MIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALD 565
M K + SD T + L K QP +L+R LI LLS GV + F + A+
Sbjct: 594 MSKFQ-----SDNITLDVLAYSKY--QP--CFLNRQLITLLSTLGVIDSIFELKQQEAVQ 644
Query: 566 DARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLD-EPYLQHRLSILMKEEKKSLQ 624
+ + + A+ + ++L G D EPY+ L + L+
Sbjct: 645 QLNRMVAEPQAAIDAIELMPMGEITNIVKELLLCGYRPDVEPYVSMLLQTFRASKLLELK 704
Query: 625 A-GKLPVTESYYLMGTVDPTGILKSNEVCIILKDG------QVSWEKVLVYRNPGLHFGD 677
++ V + +MG +D T LK +V I + V KV+V +NP +H GD
Sbjct: 705 TRSRIFVPKGRAMMGCLDETRTLKYGQVFIQASNSADDRGKSVVTGKVIVAKNPCIHPGD 764
Query: 678 IHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFK 737
I +L+A + L V + FP GPR +E +G D DGD+YFVS +P+L+
Sbjct: 765 IRILQAVHSPLLGHMVN----CVVFPQLGPRPHPNECSGSDLDGDIYFVSWDPDLI---- 816
Query: 738 ESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFL 797
R ++ A +D + + E+ + F N + + + + A+ DR
Sbjct: 817 -PTRMVAPMDYTPAPTETLDHDV--MIEEVHEYFTN--YIVNESLGIIANAHVVFADR-Q 870
Query: 798 TLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVS 857
+L ES + ++L ++ A+D P K+G+ ++P +L V+++P +M + + +
Sbjct: 871 SLKAESTQ--------CIKLAELFSIAVDYP-KTGVPAQIPHELHVKEYPDFMEKLDRAT 921
Query: 858 FESTSVLGTIYNTVKSYEAVDRSVTE 883
+ S V+G +Y +K R T+
Sbjct: 922 YVSEGVIGKLYREIKKQNPHIRHFTK 947
>gi|225424395|ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
Length = 1109
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 178/758 (23%), Positives = 293/758 (38%), Gaps = 153/758 (20%)
Query: 215 SLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGD-DNILLVKFDEE------ 267
++ D+G ++ I T F GP +N + L+ D DN L V F +E
Sbjct: 346 AISLDTGLVYVRRVQI-TPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENSEKIH 404
Query: 268 --LGGHRSSNNWNDS--YSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKC 323
+ R SN + Y + I + GI++G +KK D
Sbjct: 405 STVISPRMSNEGRRTGVYRRILSILQNGIVIG---------------DKKFD-------- 441
Query: 324 YFVRMESSAFIDMGYQYILS--GKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLE 381
F+ + SS D S G T + R + +VA Y +RL S + K
Sbjct: 442 -FLAVSSSQLRDNSAWMFASRPGLTAADIRSRMGDFSQIRNVAKYAARLGQSFSSS-KET 499
Query: 382 VDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTND 441
+ ++ IE I D ++DG + +DG G IS +LA + KC
Sbjct: 500 LKVAKHEIEIIPDIE--------THRDGTTYVFSDGIGKISAELAHRVAI-----KCGCK 546
Query: 442 DSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQ 501
+ST P Q+R Y G KG + ++ + +
Sbjct: 547 NST--------------------------PSAFQIR--YGG--YKGVVAVDPT-SSRKLS 575
Query: 502 IRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILR 561
+R SM K +++ +L+V+ S R +L+R LI LLS GV + F R
Sbjct: 576 LRKSMFKYESEN--------TNLDVLSWSKY-RPCFLNRQLITLLSTLGVKDHVFEKKQR 626
Query: 562 NALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLD-EPYLQHRLSILMKEEK 620
A+D + + A + + M++ G D EP+L L +
Sbjct: 627 EAVDQLDTILKDPLRAQEALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKL 686
Query: 621 KSLQA-GKLPVTESYYLMGTVDPTGILKSNEVCIIL---------------------KDG 658
L+ ++ V +MG +D T L+ EV + + D
Sbjct: 687 LELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHDN 746
Query: 659 QVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGD 718
+ KV+V +NP LH GD+ +L A V L V + FP G R DE +G D
Sbjct: 747 FILEGKVVVAKNPCLHPGDVRILSAVDVPALHHMVD----CVVFPQKGMRPHPDECSGSD 802
Query: 719 FDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFS--LEELESELFKLFLNTRF 776
DGD+YFV + +L+ R ++ A +++D +EE+E N +
Sbjct: 803 LDGDIYFVCWDHDLI-----PPRQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKL 857
Query: 777 -CPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKV 835
+NA ++ AD E A+ L ++ AL+ PK +G+
Sbjct: 858 GIIANAHTVFAD----------------KEYDKALCPPCKELAKLFSIALEFPK-TGVPA 900
Query: 836 EVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVD---RSVTEIWKLPCFD- 891
E+P L V+++P +M + ++ES SV+G ++ VK + RS T + +D
Sbjct: 901 EIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDVAPHNYDVRSFTRDVAMQSYDA 960
Query: 892 ----DGVPEACMTKWKGYYDQYRWEMKEAIDKCTVERE 925
DG + + Y QY +++ +D C + E
Sbjct: 961 DMEVDGFEDYVRDAFY-YKSQYDFKLGSLMDCCGIRTE 997
>gi|326522592|dbj|BAK07758.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 597
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 100/363 (27%), Positives = 167/363 (46%), Gaps = 42/363 (11%)
Query: 523 SLEVVKTSN-QPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVS 581
+L+V+ S QP +L+R LI LLS GV + F + A+ + + + A+
Sbjct: 86 TLDVLAYSKYQP--CFLNRQLITLLSTLGVRDNIFELKQQAAVMQLNRLVTEPQAAIDAI 143
Query: 582 FNYGGMDYDFTSARMILSGISLD-EPYLQ-----HRLSILMKEEKKSLQAGKLPVTESYY 635
+ ++L G D EPYL R S L++ + KS ++ + E
Sbjct: 144 ELMPMGEITNVVKELLLCGYQPDVEPYLSMILQTFRASKLLELKTKS----RIFIPEGRA 199
Query: 636 LMGTVDPTGILKSNEVCIILK------DGQVSWEKVLVYRNPGLHFGDIHVLKATYVKEL 689
+MG +D T LK EV I D V KV+V +NP LH GDI +LKA Y L
Sbjct: 200 MMGCLDETRTLKYGEVFIQASNSANESDKFVVTGKVVVAKNPCLHPGDIRILKAVYTPVL 259
Query: 690 EDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNL 749
+ V + FP GPR +E +G D DGD+YFVS +P+L+ R ++
Sbjct: 260 DHMVN----CVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPDLI-----PTRMVAPMDYT 310
Query: 750 SANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAA 809
A +D + + E+ + F N + + + + A+ D+ E A
Sbjct: 311 PAPTETLDHDV--VIEEVHEYFAN--YIVNESLGIIANAHVVFADK---------ESLKA 357
Query: 810 MKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYN 869
++L ++ A+D P K+G+ ++P +L V ++P +M + + ++ S V+G +Y
Sbjct: 358 ESTQCIKLAELFSIAVDYP-KTGVPAQIPSELHVREYPDFMEKLDRATYISKGVIGKLYR 416
Query: 870 TVK 872
+K
Sbjct: 417 EIK 419
>gi|296804254|ref|XP_002842979.1| RNA-directed RNA polymerase Rdp1 [Arthroderma otae CBS 113480]
gi|238845581|gb|EEQ35243.1| RNA-directed RNA polymerase Rdp1 [Arthroderma otae CBS 113480]
Length = 1473
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 156/659 (23%), Positives = 256/659 (38%), Gaps = 141/659 (21%)
Query: 257 DNILLVKFDEELGGHRSSNNWNDS----YSKYNEIAREGILVGLRCYHFFVFKDGGKEEK 312
D L V+F +E R ++++N+ +++ GI VG R Y F F +
Sbjct: 516 DRFLRVRFADEKYEGRINSSYNNCMDELFTRVKRTMTNGITVGDRHYEFLAFGN------ 569
Query: 313 KKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEA--RYMFMHVRTVSSVANYMSRL 370
S F + G + S T+ A R H + VA + +RL
Sbjct: 570 ------------------SQFREHGAYFFASLPTLTAANIRAWMGHFSDIKIVAKHAARL 611
Query: 371 SLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCP 430
S T V + ++ I++ + ++G I +DG G IS LA
Sbjct: 612 GQCFSATKA--VTGCPVIVQEIDE----------IERNG--YIFSDGVGRISNFLA---- 653
Query: 431 TYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLL 490
+ R EL ++ EPP + Q RL KG L
Sbjct: 654 ----------------QMIRTELN--------IQTPSDEPPSVFQFRL----GGCKGILT 685
Query: 491 LNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGG 550
++ + + + IR S K A N LEV++ S + +L+R LI +LS G
Sbjct: 686 VSPEAQHREVHIRKSQYKFAA--------VHNGLEVIRHS-KFAGAHLNRQLIMVLSALG 736
Query: 551 VPEIFFLDILRNALDDARGVFSNKRNALKV-SFNYGGMDYDFTSARMILSGISLD-EPYL 608
V + FL L L+D + +N+ A+ + F A M+ G EP++
Sbjct: 737 VTDEIFLKKLHLVLEDMQDAMTNESKAITLLQKRVDPNQMTFLLAHMVNDGFQASCEPFV 796
Query: 609 QHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKS------------------- 648
+ L + + K L + K+ + + L+G +D T LK
Sbjct: 797 KSLLELWRAWDIKYLKEKAKIHIEKGACLLGCIDETATLKGYYEKERPASDATIEERLDN 856
Query: 649 -NEVCIILKDGQ------VSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIF 701
E+ + + D + + ++ RNP LH GDI V++A V L K I
Sbjct: 857 LPEIFVQVFDTEEETKYKIIEGPCILARNPSLHPGDIRVVRAVNVPALHHL----KDVIV 912
Query: 702 FPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKE--SERWMSTSKNLSANKRLIDFS 759
FP G R ++ +GGD DGD Y V +P+L+ K+ E T+ N + R D +
Sbjct: 913 FPQTGDRDVSSTCSGGDLDGDDYIVIWDPDLIPLPKDWFCEPMDYTASNAQSLTR--DVT 970
Query: 760 LEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLIN 819
+ ++ S F ++ P A S L D E E ++L
Sbjct: 971 VNDITS-FFVTYMKNDHLPQIAHS------------HLAFADYV--EDGVNDERCMQLAQ 1015
Query: 820 IYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRD---ESVSFESTSVLGTIYNTVKSYE 875
++ A+D K+GI + DL K+P +M ++ + + S +LG IY+ V+ E
Sbjct: 1016 LHSAAVDY-NKTGIPANMSRDLIPRKWPHFMEKNHKPKEAQYYSRKILGQIYDIVERVE 1073
>gi|330935167|ref|XP_003304850.1| hypothetical protein PTT_17559 [Pyrenophora teres f. teres 0-1]
gi|311318353|gb|EFQ87064.1| hypothetical protein PTT_17559 [Pyrenophora teres f. teres 0-1]
Length = 1458
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 147/655 (22%), Positives = 255/655 (38%), Gaps = 142/655 (21%)
Query: 257 DNILLVKFDEEL--GGHRSSNNWNDS--YSKYNEIAREGILVGLRCYHFFVFKDGGKEEK 312
D + VKF +E G RS N + + R GI+V R Y F F + E
Sbjct: 604 DRFIRVKFSDEKTEGQLRSMPNGKSEAVFDRVRRAMRHGIVVAGRYYEFLAFGNSQFREH 663
Query: 313 KKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSL 372
YF SS K+ + R + +VA + +RL
Sbjct: 664 G---------AYFYAPTSS-------------KSADDIRLSLGDFTQIKTVAKFGARLGQ 701
Query: 373 ILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTY 432
S T + E+++ P D + ++G TDG G +S +A
Sbjct: 702 CFSTTRAMR--------EKVKITPIPD-----IERNGHTF--TDGVGKLSPFVA------ 740
Query: 433 VYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLN 492
+ KEL + + + +PP L Q RL KG L L+
Sbjct: 741 --------------KMAAKELGLS--------NAFDDPPSLFQFRL----GGCKGVLALD 774
Query: 493 KKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVP 552
+ + IRPS K A F LE++++S + +R +I +LS+ GVP
Sbjct: 775 LNITGTEVHIRPSQQKFHA--------KFMGLEIIRSSAL-ATPFFNRQIIVVLSHLGVP 825
Query: 553 EIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYD-FTSARMILSG-ISLDEPYLQH 610
+ + + ++D +++ AL+ + M+ T A M+L G + + +P++
Sbjct: 826 DHVIIKKQQEMVNDYETAMTDESIALQKLRKHIDMNQSTLTMAAMVLDGFMKIQDPFMMS 885
Query: 611 RLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKSN-------------------- 649
L + K+L + ++ + + +++G VD T LK +
Sbjct: 886 LLKLWRACTIKNLKEKARIAIEDGAFVLGCVDETAKLKGHMNDPQSRLDATRDEKLATLP 945
Query: 650 EVCIILKDG------QVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFP 703
E+ + + D ++ ++ RNP LH GD+ V++A + EL K + P
Sbjct: 946 EIFLQVDDTDKKGHYKIIEGVCILARNPSLHPGDLRVVRAVNIPELRHL----KNVVVLP 1001
Query: 704 CNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFS---L 760
G R LA+ +GGD DGD Y V + L+ + N +DF+
Sbjct: 1002 QTGDRDLANMCSGGDLDGDDYMVLWDAALIPK--------------TINVPPMDFTPEKP 1047
Query: 761 EELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINI 820
EE++ + + F + D + L D A+ E L L +
Sbjct: 1048 EEIDGPISAADIGEFFV----TYMKNDTLGQIAHAHLAQADFRAD--GVNDETCLALAEL 1101
Query: 821 YYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFE---STSVLGTIYNTVK 872
+ A+D P KSG+ E+ +L+ K+P +M + ++ ST +LG +Y+ V+
Sbjct: 1102 HSKAVDFP-KSGLPAEMDRELRPRKWPHFMEKKHISQYKIYRSTKILGMLYDQVQ 1155
>gi|356565022|ref|XP_003550744.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Glycine max]
Length = 1120
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 147/615 (23%), Positives = 255/615 (41%), Gaps = 124/615 (20%)
Query: 281 YSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQY 340
Y + I R+GI++G + + F F S S ++ V + +S
Sbjct: 445 YKRILTILRDGIVIGSKRFEFLAF------------SASQLRSNSVWLFAS-------ND 485
Query: 341 ILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDK 400
L + E F ++R+VS A +R+ + S +M+ + + ++E I D
Sbjct: 486 NLKAADIREWMGCFNNIRSVSKCA---ARMGQLFSSSMQ-TFEVASEDVEMIPDIE---- 537
Query: 401 DGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDV 460
V DG + +DG G IS+ A + + N D T
Sbjct: 538 ----VTSDGVSYCFSDGIGKISQCFARQVAQKL------NLDHT---------------- 571
Query: 461 ARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQT 520
P Q+R Y G KG + +++ + + +R SM+K +++
Sbjct: 572 ----------PSAFQIR--YGG--FKGVIAIDRH-SFRKLSLRSSMLKFESN-------- 608
Query: 521 FNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKV 580
N + V ++ +L+R +I+LL+ GV + L + ++ LD + ++ + AL V
Sbjct: 609 -NRMLCVTKWSESMPCFLNREIISLLTTLGVKDEVLLAMQQDQLDLLGRMLTDSKAALDV 667
Query: 581 SFNYGGMDYDFTSARMILSGISLD-EPYLQHRLSILMKEEKKSLQA-GKLPVTESYYLMG 638
+ G D +M+ + EPYL L + L++ ++ V + L+G
Sbjct: 668 LESLNGADSKSILVKMLHEFNEPNSEPYLSMMLKAYYAYQLSDLKSRCRIFVPKGRVLVG 727
Query: 639 TVDPTGILKSNEVCIILK----------------DGQVSWE----KVLVYRNPGLHFGDI 678
+D TG+L +V + + DG S KV+V +NP LH GDI
Sbjct: 728 CLDETGLLNYGQVFVRITVAKTRENFGDENLRKVDGDDSTRIIVGKVVVTKNPCLHPGDI 787
Query: 679 HVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKE 738
VL A Y KELE+ + + FP G R +E +GGD DGD++F+S + +L+ +
Sbjct: 788 RVLDAIYSKELEE--NGLRDCLVFPQKGHRPHPNECSGGDLDGDLFFLSWDKDLIP--CQ 843
Query: 739 SERWMSTSKNLSANKRLID--FSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRF 796
+E M + R++D +LEE++ +N D A+
Sbjct: 844 TEAPMDYT---GRRPRIMDHKVTLEEIQQFFVDYMIN-------------DTLGAISTAH 887
Query: 797 LTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESV 856
L D E+ A L L ++ A+D K+G +P LK +FP +M R +
Sbjct: 888 LVHADR--EQDKAKSRKCLELAELHSMAVDFA-KTGAPAAMPRVLKPREFPDFMERVDKP 944
Query: 857 SFESTSVLGTIYNTV 871
+ S VLG +Y+ +
Sbjct: 945 MYISKGVLGKLYHAI 959
>gi|356513586|ref|XP_003525493.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Glycine max]
Length = 1262
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 145/615 (23%), Positives = 255/615 (41%), Gaps = 124/615 (20%)
Query: 281 YSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQY 340
Y + I R+GI++G + + F F ++ S++
Sbjct: 446 YKRILTILRDGIVIGSKRFEFLAFSAS-------------------QLRSNSVWLFASND 486
Query: 341 ILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDK 400
L + E F ++R+VS A +R+ + S +M+ S+ ++E I D
Sbjct: 487 NLKAADIREWMGCFNNIRSVSKCA---ARMGQLFSSSMQTFEVVSQ-DVEIIPDVE---- 538
Query: 401 DGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDV 460
V DG + +DG G IS+ A R + +K L+ + +
Sbjct: 539 ----VISDGVSYCFSDGIGKISQSFA-------------------RQVAQK-LKLDHT-- 572
Query: 461 ARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQT 520
P Q+R Y G KG + ++++ + + +R SM+K ++
Sbjct: 573 ----------PSAFQIR--YGG--FKGVIAVDRR-SFRKLSLRSSMLKFESK-------- 609
Query: 521 FNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKV 580
NS+ V ++ +L+R +I+LLS GV + L + + LD + ++ + AL+V
Sbjct: 610 -NSMLCVTKWSESMPCFLNREIISLLSTLGVKDEVLLAMQHDQLDLLGRMLTDSKAALEV 668
Query: 581 SFNYGGMDYDFTSARMILSGISLD-EPYLQHRLSILMKEEKKSLQA-GKLPVTESYYLMG 638
+ G D +M+ + EPYL L + L++ ++ V + L+G
Sbjct: 669 LESLNGADSKSILVKMLHEFNEPNSEPYLSMMLKAYYAYQLSDLKSRCRIFVPKGRVLVG 728
Query: 639 TVDPTGILKSNEVCIILK----------------DGQ----VSWEKVLVYRNPGLHFGDI 678
+D TG+L +V + + DG + KV+V +NP LH GDI
Sbjct: 729 CLDETGLLNYGQVFVRITVTKTREKFGDENLRKVDGDDNTCIIVGKVVVTKNPCLHPGDI 788
Query: 679 HVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKE 738
VL A Y +ELE+ + + FP G R +E +GGD DGD++F+S + +L+ +
Sbjct: 789 RVLDAIYSEELEE--KGLRDCLVFPQKGHRPHPNECSGGDLDGDLFFISWDKDLIP--CQ 844
Query: 739 SERWMSTSKNLSANKRLID--FSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRF 796
+E M + R++D +LEE++ +N D A+
Sbjct: 845 TEAPMDYT---GRRPRIMDHKVTLEEIQQFFVDYMIN-------------DTLGAISTAH 888
Query: 797 LTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESV 856
L D E+ A L L ++ A+D K+G +P LK +FP +M R +
Sbjct: 889 LVHADR--EQDKAKSRKCLELAELHSMAVDF-AKTGAPAAMPRVLKPREFPDFMERVDKP 945
Query: 857 SFESTSVLGTIYNTV 871
+ S VLG +Y +
Sbjct: 946 MYISKGVLGKLYRAI 960
>gi|307135834|gb|ADN33705.1| RNA-dependent RNA polymerase [Cucumis melo subsp. melo]
Length = 1137
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 167/678 (24%), Positives = 277/678 (40%), Gaps = 127/678 (18%)
Query: 219 DSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGD-DNILLVKF-DEELG------- 269
D G +++ I T F GP N + ++R + D DN L V F DEEL
Sbjct: 379 DDGLVYVHRVQI-TPLKVYFCGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKLHSIDL 437
Query: 270 GHRSSNNWNDS----YSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYF 325
RSS+ N++ Y + + + GI++G + + F F
Sbjct: 438 APRSSSPENNTRTRVYDRVVSVLKNGIVIGDKKFEFLAFSAS------------------ 479
Query: 326 VRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFS 385
++ ++F + LS + E F +R +VA Y +RL + K +
Sbjct: 480 -QLRENSFWMFASRKGLSAADIREWMGDFRQIR---NVAKYAARLGQSFGSSRK-TLCVK 534
Query: 386 RINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTE 445
IE I D K N++Y +DG G IS+ LA K
Sbjct: 535 EHEIEVIPDVEVERK--NIMY------CFSDGIGKISKTLAKK----------------- 569
Query: 446 RSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPS 505
VA+ G P Q+R Y G KG + ++ + + +R S
Sbjct: 570 --------------VAKKCGLTGHTPSAFQIR--YAG--YKGVVAIDPT-SEKKLSLRKS 610
Query: 506 MIKVKADRDLSDGQTFNSLEVVKTSN-QPRKTYLSRNLIALLSYGGVPEIFFLDILRNAL 564
M+K + D Q L+V+ S QP +L+R +I LLS G+ + F+ + A+
Sbjct: 611 MLKYMS----LDTQ----LDVLLWSKYQP--CFLNRQVINLLSTLGIGDDVFVKKQKEAI 660
Query: 565 DDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQ 624
D + + AL+V + ++ + +EP+L L + L+
Sbjct: 661 DQLDSILEDPSRALEVLELMSPGEMTSILKELLSFYMPNEEPFLNMMLWTFRANKLLDLK 720
Query: 625 A-GKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWE-------KVLVYRNPGLHFG 676
++ V +MG +D T L+ +V + S E KV+V +NP LH G
Sbjct: 721 TKSRIFVPRGRTMMGCLDETRTLEYGQVFVHCSVPGRSSEGNFVVKGKVVVAKNPCLHPG 780
Query: 677 DIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPEL--LK 734
D+ +L A VK L V + FP G R +E +G D DGD+YFV + EL +K
Sbjct: 781 DVRLLDAIDVKALHHMVD----CVVFPQKGKRPHPNECSGSDLDGDLYFVCWDSELTCIK 836
Query: 735 HFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMD 794
K + S L D ++EE++ K F N + D A+ +
Sbjct: 837 QVKPMSYEPAPSIQLDH-----DVTIEEVQ----KYFANY---------MVNDGLGAIAN 878
Query: 795 RFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDE 854
D+++ K AM ++L ++ A+D PK +G+ +P +L+V ++P +M + +
Sbjct: 879 AHTVFADKNS--KKAMSAECIKLAKLFSIAVDFPK-TGVPANLPRNLRVHEYPDFMDKPD 935
Query: 855 SVSFESTSVLGTIYNTVK 872
++ S VLG ++ VK
Sbjct: 936 KPTYVSNGVLGKLFRGVK 953
>gi|390594179|gb|EIN03593.1| RdRP-domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 973
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 124/496 (25%), Positives = 205/496 (41%), Gaps = 104/496 (20%)
Query: 262 VKFDEELGGHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPV 321
++FD ++ G ++ + R G VG R + F + ++
Sbjct: 479 LRFDRDVDGEHFVK------TRIGGVLRNGFQVGGRTFEFLAYSQSALKDHA-------- 524
Query: 322 KCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLE 381
+FVR + Q+I +G T+ E+ F V S+ Y +R+S + T
Sbjct: 525 -VWFVRR-----FKIDNQWI-TGNTIRESLGSFDKVIYCPSL--YGARMSQAFTAT-DPS 574
Query: 382 VDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTND 441
V + I RI D RD G TDG G IS +LA + T +
Sbjct: 575 VTITAEEIVRIPDIERRDSTGRT-------WQFTDGVGTISPELAQEITTAL-------- 619
Query: 442 DSTERSIDRKELEANFSDVARTESHYGE--PPLLMQVRLFYNGTAVKGTLLLNKKLPPQT 499
VAR+ G P Q+R+ KG + +N KL +
Sbjct: 620 ------------------VARSRRKKGRYFRPRAFQIRI----AGSKGMVSVNHKLHGRV 657
Query: 500 IQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDI 559
+ +RPSMIK ++ L +E+ KT ++P K L+R L+ LL GVP F+ +
Sbjct: 658 LCLRPSMIKFESPNSLD-------IEIAKTFDKPGKFLLNRPLVMLLEGLGVPADEFMKL 710
Query: 560 LRNALDDARGVFSNKRNALKVSFNYG-GMDYDFTSARMILSGISLD-----------EPY 607
A++D + + A ++ +G G + TS + L + +D + +
Sbjct: 711 QNAAVEDTKAASRSLTKAAQILETHGLGTAFRLTSVFLGLERLGVDLTRRGNRFRLEDEF 770
Query: 608 LQHRLSILMKEEKKSLQA-GKLPVTESYYLMGTVDPTGILKSNEV--CIILKDGQVSWEK 664
+ ++ + + L+ ++PV S+ L+G D G+LK EV CI G EK
Sbjct: 771 IHRAIAYAINHVLRELKHHARIPVPSSWTLVGIADIHGVLKEGEVFACIQPSHGG---EK 827
Query: 665 ------VLVYRNPGLHFGDIHVLKAT------YVKELEDFVGTSKYAIFFPCNGPRSLAD 712
V++ R+P +H GD+ +L+A + +LE T + F G R A
Sbjct: 828 IYLQGPVMITRSPVIHPGDVQMLRAVGRPPAGSIYDLEPIPNT----VIFSIKGSRPTAS 883
Query: 713 EIAGGDFDGDMYFVSR 728
E+ GGD DGD++ VS+
Sbjct: 884 ELGGGDLDGDVFNVSQ 899
>gi|118386404|ref|XP_001026321.1| RNA dependent RNA polymerase family protein [Tetrahymena thermophila]
gi|89308088|gb|EAS06076.1| RNA dependent RNA polymerase family protein [Tetrahymena thermophila
SB210]
Length = 1439
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 142/535 (26%), Positives = 240/535 (44%), Gaps = 102/535 (19%)
Query: 386 RINIERIED--EPCR----DKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCT 439
R NIE I+D P D +GN+ Y + + TDG G IS+DL K +
Sbjct: 687 RPNIEFIDDITTPSAVQEVDANGNICYFRQKKKVFTDGIGTISQDLIRKISDH------- 739
Query: 440 NDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQ- 498
L A F +QVR Y G KG L ++ K +
Sbjct: 740 -------------LNAFFM-------------CAIQVR--YGGA--KGVLTIDYKSDKKN 769
Query: 499 TIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLD 558
TIQ+R SMIK K ++D Q ++++ N+ R YL+R +I LL G+ F+
Sbjct: 770 TIQLRESMIKYK----ITDEQDELIIDIL-DRNKYRFGYLNRQVIILLRSLGIENEQFIQ 824
Query: 559 ILRNALDDARGVFSNKRNALKVS--FNYGGMDYDFTSARMI-LSGI--SLDEPYLQHRLS 613
+ +++ ++ALK + F DY R+ ++ + S+ +
Sbjct: 825 AQQEYIEELN------KSALKDASIFTLFNTDYSKDGTRLFPITHLLRSMQTSRIDMAQD 878
Query: 614 ILMKEEKKSLQA---------GKLPVTESYYLMGTVDPTGILKSNEV-CIILKDGQVSWE 663
I K +L+ + + +S LMG +D +L+ +EV I +D + S+
Sbjct: 879 IFCKGVIHTLKKRGFYILRKKSNIFLKKSARLMGVIDEYNVLEQDEVFAYISQDSEKSFF 938
Query: 664 KV----LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIF--------FPCNGPRSLA 711
+V +V +NP LH GDI LKA ++ + +G K F FP G +
Sbjct: 939 QVEGDVIVVKNPCLHPGDIRKLKAVTLETISQRLGEGKINPFKKLRNILIFPQKGKEPIT 998
Query: 712 DEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLF 771
+IAG D DGD YF+ + + ++ E + + S K++ S E+ + E+ K
Sbjct: 999 SQIAGSDLDGDCYFICWDQRFIP-LEQKEPFNYDEDDNSQKKQI---SQEQYDIEISKK- 1053
Query: 772 LNTRFCPSNAKSLAADCWQAVMDRFL------TLG--DES----AEEKAAMKEN--MLRL 817
NT+F N D + ++D F+ LG D S A++ E+ L+L
Sbjct: 1054 PNTQFKTKNPVREVIDDNEQMLDFFIDFINNENLGKIDNSHLVFADKSPLYAEDPKCLKL 1113
Query: 818 INIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVK 872
+++ A+D K +GI ++P++L ++++P +M +D+ S++S S+LG +Y VK
Sbjct: 1114 ASLHAQAVDYAK-TGISPQLPKNLAIKEYPDFMEKDDKPSYQSQSILGILYRQVK 1167
>gi|302812554|ref|XP_002987964.1| hypothetical protein SELMODRAFT_126929 [Selaginella moellendorffii]
gi|300144353|gb|EFJ11038.1| hypothetical protein SELMODRAFT_126929 [Selaginella moellendorffii]
Length = 1052
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 109/417 (26%), Positives = 189/417 (45%), Gaps = 53/417 (12%)
Query: 470 PPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKT 529
P +L +++ Y G KG + ++ + + +RPSM+K ++R L+V+K
Sbjct: 516 PVVLSALQIRYAG--YKGVVAVDPTCSTK-LSLRPSMLKFPSER--------TGLDVLKA 564
Query: 530 SNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKV--SFNYGGM 587
S Q YL+R I L++ GVP+ F + + L + S+ + A++V S + GG
Sbjct: 565 S-QYAPYYLNRQSIILMTTLGVPDEVFERMQKEELKILDEMLSDPQTAIEVLRSSSSGGE 623
Query: 588 DYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQ------AGKLPVTESYYLMGTVD 641
+ A + EP+L+ L + +SLQ ++ V + L+G +D
Sbjct: 624 AHSIMVAMLQAGYKPAHEPFLRRLL-----DNFRSLQLYLLRTKSRIYVPKGRCLLGCLD 678
Query: 642 PTGILKSNEVCIIL-----KDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTS 696
TG+L +V + + + V KV+V +NP LH GD+ VL+A V L +
Sbjct: 679 ETGVLDYGQVFVQVGVTRSESACVVLGKVVVTKNPCLHPGDLLVLEAVDVPGLHHMID-- 736
Query: 697 KYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLI 756
+ FP G R +E +G D DGD+YFV+ + L+ +A K
Sbjct: 737 --CVVFPQRGKRPHPNECSGSDLDGDLYFVTWDKSLVPPVTHEPMDYEPG---TAAKLDH 791
Query: 757 DFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLR 816
+LEE++ + F++ S+ D + + L D+ E A L
Sbjct: 792 SVTLEEIQ----RFFVD---------SMVHDSLGVISNAHLVHADKELER--AKDPKCLE 836
Query: 817 LINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKS 873
L + A+D K+GI +P DL+ +P +M + ++ S SVLG +Y +++S
Sbjct: 837 LARLASTAVDF-AKTGIPAVIPVDLRPRDYPDFMENEFKSTYTSQSVLGKLYRSLQS 892
>gi|315307478|gb|ADU04140.1| hypothetical protein [Gossypium hirsutum]
Length = 1147
Score = 104 bits (259), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 103/395 (26%), Positives = 179/395 (45%), Gaps = 62/395 (15%)
Query: 500 IQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDI 559
+ +R SM+K ++ + L V K S + +L+R ++ L S G+ + F +
Sbjct: 595 MSLRDSMLKFESKVRM--------LNVTKWS-ESMPCFLNREIVTLFSTLGIKDEVFERM 645
Query: 560 LRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEE 619
L + +N+ AL + GG++ S +++ + DEP +Q LS++++
Sbjct: 646 QEEQLCLLGKMLTNREAALDTLQSLGGVN----SKNILVEMLQFDEPNVQPYLSMMLQAH 701
Query: 620 KKSLQAG-----KLPVTESYYLMGTVDPTGILKSNEV--CIILKDGQVSWE--------- 663
++L + ++ V + L+G +D TG L +V CI +K ++
Sbjct: 702 YENLLSDLKSRCRIFVPKGRILIGCLDETGTLNYGQVYLCIKMKKAELECADQSYFRKVD 761
Query: 664 --------KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIA 715
KV+V +NP LH GD+ VL+A Y +LE+ + FP G R +E +
Sbjct: 762 EETAIVIGKVVVTKNPCLHPGDVRVLEAVYEPQLEEKGLVD--CLVFPEKGERPHPNECS 819
Query: 716 GGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLID--FSLEELESELFKLFLN 773
GGD DGD +F+S + +L+ ++E M + R++D +LEE++ +N
Sbjct: 820 GGDLDGDQFFISWDKDLIPC--QTEPPMDYT---GRRPRIMDHEVTLEEIQKFFVDYMIN 874
Query: 774 TRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGI 833
D A+ L D E A EN L L ++ A+D K+G
Sbjct: 875 -------------DTLGAISTAHLVHADR--EPYKARSENCLALATLHSMAVDF-AKTGA 918
Query: 834 KVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIY 868
E+P LK +FP +M+R + S+ VLG +Y
Sbjct: 919 PAEMPRALKPREFPDFMQRGNKPMYTSSGVLGKLY 953
>gi|449457381|ref|XP_004146427.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|449491623|ref|XP_004158955.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|316989901|gb|ADU77016.1| RNA-dependent RNA polymerase 1b [Cucumis sativus]
Length = 1115
Score = 104 bits (259), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 167/697 (23%), Positives = 293/697 (42%), Gaps = 145/697 (20%)
Query: 216 LKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELG-DDNILLVKF-DEELG---- 269
L + G +++ + T F GP +N + L+R DN L V F DEELG
Sbjct: 357 LTLNEGLVYVHRVQV-TPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYS 415
Query: 270 ---GHRSSNNWNDSYSKYNE----IAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVK 322
R+S++ D +K + + R+GI +G + + F + S+S ++
Sbjct: 416 TELSPRASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAY------------SSSQLR 463
Query: 323 CYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLIL-SKTMKLE 381
E++A++ + + K R + +VA Y +RL S T L
Sbjct: 464 ------ENAAWMFAPKNELTAAKI----RQWMGDFHNIRNVAKYAARLGQSFGSSTETLS 513
Query: 382 VDFSRINIERIEDEPCRDKDG-NVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTN 440
V SR ++ I D G N V+ +DG G I+ A K +KC
Sbjct: 514 V--SRREVKVIPDIEVESGSGVNYVF--------SDGIGKIAASFARKV-----AKKC-- 556
Query: 441 DDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTI 500
+ T S + Q+R Y G KG + ++ P ++
Sbjct: 557 ------------------GIRHTPSAF-------QIR--YAG--FKGVISVD---PTSSV 584
Query: 501 QI--RPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLD 558
++ R SM+K ++ T L+V+ S +L+R LI LLS GV + F
Sbjct: 585 KLSLRNSMLKYES--------TDTKLDVLSWSKY-HPCFLNRQLITLLSTLGVQDHVFES 635
Query: 559 ILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLD-EPYLQHRLSILMK 617
+ +D+ +FS+ A + + M+L G D EP+L+ L +
Sbjct: 636 KQQELIDELDTIFSDPLKAQQALELMSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRE 695
Query: 618 EEKKSLQA-GKLPVTESYYLMGTVDPTGILKSNEVCII------LKDGQVSWEK------ 664
+ L+ ++ + +MG +D T L+ EV + L D +V +++
Sbjct: 696 SKLMELRMKSRIFIPNGRAMMGCLDETRNLEYGEVFVQCSAHQQLHDDRVIFKRIKSNRH 755
Query: 665 ------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGD 718
V+V +NP LH GD+ VL A V L + + FP G R +E +G D
Sbjct: 756 FIVTGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMID----CVVFPQKGSRPHPNECSGSD 811
Query: 719 FDGDMYFVSRNPELL--KHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRF 776
DGD+YFV +P+L+ + + + S+ L D ++EE++ +N
Sbjct: 812 LDGDIYFVCWDPDLIPPQQVEPMDYTPVPSQVLDH-----DVTMEEVQEYFANYMVN--- 863
Query: 777 CPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVE 836
++ + A+ A D+ E K AM ++L ++ A+D PK +G+
Sbjct: 864 ---DSLGIIANAHTAFADK---------EPKKAMSNPCIQLAKLFSIAVDFPK-TGVPAL 910
Query: 837 VPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKS 873
+P +L+V+++P +M + + V++ES +VLG ++ + S
Sbjct: 911 IPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDS 947
>gi|308080205|ref|NP_001183933.1| putative RNA-dependent RNA polymerase [Zea mays]
gi|254838301|gb|ACT83377.1| putative RNA-dependent RNA polymerase [Zea mays]
Length = 1108
Score = 104 bits (259), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 165/699 (23%), Positives = 285/699 (40%), Gaps = 138/699 (19%)
Query: 204 RKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGD-DNILLV 262
RK+ + ++ D G +++ + T F GP +N + ++ D DN L +
Sbjct: 353 RKSRHASQKLSNISLDDGLVYVHRVQV-TPAKVYFYGPEINVSNRVVRHFSADIDNFLRI 411
Query: 263 KF-DEELGGHRS------SNNWNDS-----YSKYNEIAREGILVGLRCYHFFVFKDGGKE 310
F DE+ RS S + ND+ Y++ + GI +G + + F F
Sbjct: 412 SFVDEDCEKLRSADLSPRSTSGNDARRTALYNRVLSVLSNGINIGDKHFEFLAF------ 465
Query: 311 EKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRL 370
S+S ++ ++SA++ Q G T + R R + +VA Y + L
Sbjct: 466 ------SSSQLR------DNSAWMFASRQ----GLTASDIRKWMGDFRDIRNVAKYAAIL 509
Query: 371 SLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCP 430
S + + + + +ERI D +G I +DG G IS + A++
Sbjct: 510 GQSFSSSTE-TLKVHKSEVERIPD-----------ITNGTKYIFSDGVGKISANFAVEVA 557
Query: 431 TYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLL 490
KC F+ P + Q+R Y G KG +
Sbjct: 558 M-----KCK--------------LKRFA------------PSVFQIR--YGG--YKGVVA 582
Query: 491 LNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGG 550
++ + + +R SM K + S+ T + L K QP +L+R LI LLS G
Sbjct: 583 VDTR-SNHKLSLRKSMSKFQ-----SENITLDVLAYSKY--QP--CFLNRQLITLLSTLG 632
Query: 551 VPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLD-EPYLQ 609
V + F + AL + + + A + + ++ G D EPYL
Sbjct: 633 VSDNVFELKQKEALRQLNRMVTEPQAAREAVELMPMGEVTNVVKELLSCGYQPDHEPYLS 692
Query: 610 HRLSILMKEEKKSLQA-GKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEK---- 664
L + L+ ++ +T+ +MG +D T LK +V + Q S+
Sbjct: 693 MLLQTFRASKLLELKTKSRIFITQGRAMMGCLDETCTLKYGQVFV-----QASYSADDHR 747
Query: 665 -------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGG 717
V+V +NP LH GDI VL+A V L + FP GPR +E +G
Sbjct: 748 KVVVTGKVVVAKNPCLHPGDIRVLQAVDVPALHHLFD----CVVFPQQGPRPHPNECSGS 803
Query: 718 DFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLI--DFSLEELESELFKLFLNTR 775
D DGD+YFVS +P L+ R + A+ + D ++EE++ E F T
Sbjct: 804 DLDGDIYFVSWDPHLI-----PSRLVDPMDYTPASAETLDHDVTIEEIQ-EYF-----TN 852
Query: 776 FCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKV 835
+ + + + A+ D+ E A ++L ++ A+D P K+G+
Sbjct: 853 YIVNESLGIIANAHVVFTDQ---------ERMKAESPPCVQLAKLFSIAVDFP-KTGVPA 902
Query: 836 EVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSY 874
+P +L V+++P +M + + V++ES V+G +Y +K +
Sbjct: 903 LIPHELHVKEYPDFMEKLDKVTYESKGVIGKLYREIKKH 941
>gi|453080014|gb|EMF08066.1| RdRP-domain-containing protein, partial [Mycosphaerella populorum
SO2202]
Length = 446
Score = 103 bits (258), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 129/501 (25%), Positives = 196/501 (39%), Gaps = 133/501 (26%)
Query: 278 NDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMG 337
N+ +S+ +GI VG R Y F F + + F D G
Sbjct: 9 NEVFSRVKRAMAQGINVGGRHYEFLAFGN------------------------AQFRDHG 44
Query: 338 YQYILS--GKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDE 395
+ S G T + R ++ +A Y+SRL S T + +N+E+I+D
Sbjct: 45 AYFFASTTGVTAADIRDWMGDFTSIRIIAKYVSRLGQCFSTTRAIP---HAVNVEKIDD- 100
Query: 396 PCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEA 455
V ++G TDG G IS LA + A
Sbjct: 101 ---------VERNG--FCFTDGVGKISPFLA-------------------------RMIA 124
Query: 456 NFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDL 515
+ +A +E Y P + Q+RL KG L ++ +L IQIRPS K A
Sbjct: 125 HHYGMANSEQDY---PSVFQIRL----AGCKGVLAVDPRLKGMKIQIRPSQQKFPAKS-- 175
Query: 516 SDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKR 575
N LE+ + S Q L+ LI +LS GVP+ FL+ LRN L D + +++
Sbjct: 176 ------NGLEICRIS-QFSTASLNVQLILVLSALGVPDEVFLNKLRNMLSDLQEALDSEQ 228
Query: 576 NALK-----VSFNYGGMDYDFTSARMILSG-ISLDEPYLQHRLSILMKEEKKSL-QAGKL 628
AL+ V FN + A MI G ++ +P++ L + K L + ++
Sbjct: 229 KALELLQKNVDFN----QMTISLACMIFDGFMATKDPFVMTCLRLWRSWNLKYLKEKARI 284
Query: 629 PVTESYYLMG--------------TVDPTGILKSN----------------EVCIILKDG 658
+ + +L+G DP GILK E+ + + D
Sbjct: 285 FIDQGAFLLGCTDESATLRGHFKSVADPNGILKDQQSTEADVDKHDESALPEIFLQIPDA 344
Query: 659 Q------VSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLAD 712
+ V V++ RNP LH GDI V+KA L K + P G R +A+
Sbjct: 345 EKPGSYKVVTGIVVLARNPSLHPGDIRVVKAVDNAALRHL----KNCVVLPQTGDRDVAN 400
Query: 713 EIAGGDFDGDMYFVSRNPELL 733
+GGD DGD + V + EL+
Sbjct: 401 MCSGGDLDGDDFIVMWDKELI 421
>gi|261204627|ref|XP_002629527.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis SLH14081]
gi|239587312|gb|EEQ69955.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis SLH14081]
Length = 1633
Score = 103 bits (258), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 150/651 (23%), Positives = 246/651 (37%), Gaps = 137/651 (21%)
Query: 257 DNILLVKF-DEELGGHRSSNNWNDS------YSKYNEIAREGILVGLRCYHFFVFKDGGK 309
D L V+F DE+ G NN +S Y++ + GI +G R Y F F +
Sbjct: 676 DRFLRVRFCDEKYIGKIYPNNSGNSQCMEKVYARVLRTLQHGITIGDRRYEFLAFGNSQL 735
Query: 310 EEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSR 369
E YF L T R + + VA Y +R
Sbjct: 736 REHG---------AYFFAS-------------LPHLTAANIRAQMGDLNNIRVVAKYAAR 773
Query: 370 LSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKC 429
L S T V + I++I+D +++G V+ DG + T I DL +K
Sbjct: 774 LGQCFSTTRA--VTSCPVQIKKIDD---IERNG-YVFSDGVGRLSHFLTQMIQSDLGIKT 827
Query: 430 PTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTL 489
P+ GEPP + Q RL KG L
Sbjct: 828 PS------------------------------------GEPPSVFQFRL----GGCKGIL 847
Query: 490 LLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYG 549
++ + + + IR S K A + N LE+++ S+ T L+R LI +LS
Sbjct: 848 AVSPEARQREVHIRRSQFKFPA--------SHNGLEIIRYSHFSYAT-LNRQLILILSAL 898
Query: 550 GVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMD-YDFTSARMILSGISLD-EPY 607
G P+ F+ L L + +++ A+ + Y + A MI G EP+
Sbjct: 899 GTPDEVFIAKLSMMLANLEQAMTDEDKAVSLLQKYVDPNQMTLVLADMIRDGFQGSREPF 958
Query: 608 LQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEKV- 665
+ L + + K L + K+ + E +L+G +D T LK K E+V
Sbjct: 959 VSSLLELWRTWQIKYLKEKAKIAIDEGAFLLGCIDETKTLKGYFRSARPKANSTYQERVD 1018
Query: 666 ------------------------LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIF 701
++ RNP LH GDI V+KA L + +
Sbjct: 1019 CLPEIFVQVWRHSEGKYAVIEGLCILARNPSLHPGDIRVVKAVDAPALHHL----RDVVV 1074
Query: 702 FPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLE 761
P G R LA+ +GGD DGD Y V + +L ++ + N + ++D +
Sbjct: 1075 LPQTGDRDLANICSGGDLDGDDYIVIWDKSMLP----TDWFHEPMDNCAPKPEVLDRDV- 1129
Query: 762 ELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIY 821
++ K ++N + C + + L D +E E ++L ++
Sbjct: 1130 -TVDDITKFYVNY---------MQNCCLSQIARAHMALAD--FQEDGVKDEKCIQLAALH 1177
Query: 822 YDALDAPKKSGIKVEVPEDLKVEKFPCYMRR---DESVSFESTSVLGTIYN 869
A+D KSGI V + +LK + +P +M R +++ + S +LG +Y+
Sbjct: 1178 SAAVDY-NKSGIPVRMTRNLKPKVWPHFMERKMKNKNAEYRSAKILGQLYD 1227
>gi|189202022|ref|XP_001937347.1| RNA-directed RNA polymerase Rdp1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187984446|gb|EDU49934.1| RNA-directed RNA polymerase Rdp1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 1604
Score = 103 bits (257), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 144/655 (21%), Positives = 255/655 (38%), Gaps = 142/655 (21%)
Query: 257 DNILLVKFDEEL--GGHRSSNNWNDS--YSKYNEIAREGILVGLRCYHFFVFKDGGKEEK 312
D + VKF +E G RS N + + R GI+V R Y F F + E
Sbjct: 682 DRFIRVKFSDEKTEGQLRSMPNGKSGAVFDRVRRAMRHGIVVAGRYYDFLAFGNSQFREH 741
Query: 313 KKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSL 372
YF SS + ++ R V +VA + +RL
Sbjct: 742 G---------AYFFAPTSSM-------------SANDIRLSLGDFTNVKTVAKFGARLGQ 779
Query: 373 ILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTY 432
S T + +++I+ I + + ++G TDG G +S +A
Sbjct: 780 CFSTTRAMS---QKVSIKPIPE----------IMRNGYTF--TDGVGKLSPFVA------ 818
Query: 433 VYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLN 492
+ + + L F D PP L Q RL KG L L+
Sbjct: 819 ------------KMAAEELGLSNAFDD----------PPSLFQFRL----GGCKGVLALD 852
Query: 493 KKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVP 552
+ + IRPS K +A F LE++++S + +R +I +LS+ GVP
Sbjct: 853 PTITGTEVHIRPSQQKFQAK--------FMGLEIIRSSAF-ATPFFNRQIIVVLSHLGVP 903
Query: 553 EIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDY-DFTSARMILSG-ISLDEPYLQH 610
+ + + ++D +++ A++ + M+ A M+L G + + +P++
Sbjct: 904 DHVIIKKQQEMVNDYETAMTDESVAIQKLRKHIDMNQTTLAMAAMVLDGFMKVQDPFMMS 963
Query: 611 RLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKSN-------------------- 649
L + K+L + ++ + + +++G VD T LK +
Sbjct: 964 LLKLWRACTIKNLKEKARIAIEDGAFVLGCVDETAKLKGHMNDPQSRLDATRDEKLATLP 1023
Query: 650 EVCIILKDG------QVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFP 703
E+ + + D ++ ++ RNP LH GD+ V++A + EL+ K + P
Sbjct: 1024 EIFLQVDDTNKKGHYKIIEGVCILARNPSLHPGDLRVVRAVNIPELQHL----KNVVVLP 1079
Query: 704 CNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFS---L 760
G R LA+ +GGD DGD Y V W + + N +DF+
Sbjct: 1080 QTGDRDLANMCSGGDLDGDDYMV--------------LWDTALIPKTINAPPMDFTPEKP 1125
Query: 761 EELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINI 820
EE+E + + F + D + L D + + + L L +
Sbjct: 1126 EEIEGPIGAAHMGEFFV----TYMKNDTLGQIAHAHLAQAD--SRDDGVNDQTCLALAEL 1179
Query: 821 YYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRD---ESVSFESTSVLGTIYNTVK 872
+ A+D P KSG+ E+ +L+ +K+P +M + E + ST +LG +Y+ V+
Sbjct: 1180 HSKAVDFP-KSGLPAEMNRELRPKKWPHFMEKKHMPEYKIYHSTKILGMLYDQVQ 1233
>gi|225424397|ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
Length = 1121
Score = 103 bits (257), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 164/696 (23%), Positives = 275/696 (39%), Gaps = 142/696 (20%)
Query: 215 SLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGD-DNILLVKF-DEELGGHR 272
++ D+G ++ I T F GP +N + L+ D DN L V F DE L
Sbjct: 348 AISLDTGLVYVRRVQI-TPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEKIH 406
Query: 273 SS---------NNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKC 323
S+ Y + I + GI++G + + F F S+S ++
Sbjct: 407 STVISPRMSKEGRRTGVYRRILSILQNGIVIGDKKFDFLAF------------SSSQLR- 453
Query: 324 YFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVD 383
++SA++ G T E R + +VA Y +RL S + K +
Sbjct: 454 -----DNSAWMFASR----PGLTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSS-KETLK 503
Query: 384 FSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDS 443
++ IE I D ++K + +DG G IS LA + KC S
Sbjct: 504 VAKDEIENIPDIE--------IHKGRTTYVFSDGIGKISPQLAHRVAI-----KCGCKSS 550
Query: 444 TERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIR 503
T P Q+R Y G KG + ++ + + +R
Sbjct: 551 T--------------------------PSAFQIR--YGG--YKGVVAVDPT-SSRKLSLR 579
Query: 504 PSMIKVKADRDLSDGQTFNSLEVVKTSN-QPRKTYLSRNLIALLSYGGVPEIFFLDILRN 562
SM K ++D +L+V+ S QP ++L+R LI LLS GV + F R
Sbjct: 580 KSMFKYESDN--------TNLDVLAWSKYQP--SFLNRQLITLLSTLGVKDHVFEKKQRA 629
Query: 563 ALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLD-EPYLQHRLSILMKEEKK 621
A+D + + A + + M++ G D EP+L L +
Sbjct: 630 AVDQLDTILKDPVAAQEALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLL 689
Query: 622 SLQA-GKLPVTESYYLMGTVDPTGILKSNEVCIIL---------------------KDGQ 659
L+ ++ V +MG +D T L+ EV + + D
Sbjct: 690 ELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGSHHDNF 749
Query: 660 VSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDF 719
+ K++V +NP LH GD+ VL A V L V + FP G R +E +G D
Sbjct: 750 ILEGKIVVAKNPCLHPGDVRVLWAVNVPTLHHMVD----CVVFPQKGKRPHPNECSGSDL 805
Query: 720 DGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFS--LEELESELFKLFLNTRF- 776
DGD+YFV + +L+ + ++ A +++D +EE+E +N
Sbjct: 806 DGDIYFVCWDRDLI-----PPQQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIVNDSLG 860
Query: 777 CPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVE 836
+NA ++ AD E A + L ++ A+D PK +G+ E
Sbjct: 861 IIANAHTVFAD----------------KEYDKAYCDPCTELAKLFSIAVDFPK-TGVPAE 903
Query: 837 VPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVK 872
+P +L+V+++P +M + + ++ES SV+G ++ VK
Sbjct: 904 IPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVK 939
>gi|452987327|gb|EME87083.1| hypothetical protein MYCFIDRAFT_202751 [Pseudocercospora fijiensis
CIRAD86]
Length = 1276
Score = 103 bits (256), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 178/752 (23%), Positives = 288/752 (38%), Gaps = 168/752 (22%)
Query: 238 FKGPYLNQTRTHLQRELGD--DNILLVKF-DEELGGHRSS---NNWNDSYSKYNEIAREG 291
+ + +T + R+ D D L VKF DE G S N N+ +S+ G
Sbjct: 325 YAATMVRETSNRVIRQFKDYEDRFLRVKFTDERYKGKIWSSDDNRMNEVFSRIKRTMTHG 384
Query: 292 ILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEAR 351
I +G R Y F F + E +F E L+ + + E
Sbjct: 385 IQIGDRHYEFLAFGNSQFREHGA--------YFFAPTEK-----------LTAEMIREWM 425
Query: 352 YMFMHVRTVSSVANYMSRLSLILSKTMKL--EVDFSR-INIERIEDEPCRDKDGNVVYKD 408
F H+R + A Y+SRL S T + +VD R ++IER
Sbjct: 426 GRFSHIRVI---AKYVSRLGQCFSTTRAIPHKVDLGRSVDIER----------------- 465
Query: 409 GEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYG 468
TDG G +S LA + A +V +E ++
Sbjct: 466 -NGYCFTDGAGTMSPFLA-------------------------RMIALHHNVPNSEENF- 498
Query: 469 EPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVK 528
P +Q RL KG L ++ L IQIRPS K A+ ++ LE+ +
Sbjct: 499 --PSAVQFRL----AGCKGVLAVDPALKGFAIQIRPSQEKFPAE--------YHGLEICR 544
Query: 529 TSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMD 588
S Q L+ +I +LS G+ + FL +R L D + S++R AL++ +D
Sbjct: 545 IS-QFSTANLNMQIILVLSALGIDDEVFLGKMRAMLVDIKEAMSDERKALELL--QKNID 601
Query: 589 YDFTS---ARMILSG-ISLDEPYLQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPT 643
Y T+ A MI G + +P++ L + K L + ++ V + ++ + D T
Sbjct: 602 YSQTTILLATMIFDGFMETKDPFMITCLRLWRSWCLKYLKEKARIYVEQGFFGLAVPDET 661
Query: 644 GILK-----------------------SNEVC-------IILK----DGQVSWEKVL--- 666
G L+ S+E+ I L+ D + +L
Sbjct: 662 GTLRGHYDKPVSADSDNADTSDEHDAGSDEIASDEDLPEIFLQVPDPDAPGKYRVILSIC 721
Query: 667 -VYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYF 725
+ RNP LH GD+ ++A EL + + P G R LA+ +GGD DGD +
Sbjct: 722 ILARNPSLHPGDVRKVRAVDKPELHHL----RDVVVIPTTGDRDLANMCSGGDLDGDDFM 777
Query: 726 VSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLA 785
V +P + H TS + + + S++++ + K N N S+
Sbjct: 778 VIWDPNFIPHGASHPPMDYTSPDPVTSDGPV--SVDDMTTFFVKHIKN-----DNLSSI- 829
Query: 786 ADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEK 845
AV R+ D+ A+ + L ++ A+D P K+G+ + LKV+K
Sbjct: 830 -----AVAHRY--WADQLAD--GVKDAKCIELAQLHSKAVDYP-KTGVPAVMTPGLKVQK 879
Query: 846 FPCY---MRRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCFDDGVPEACMTKW 902
+P + + +S + S VLG +Y+ VK W LP FD + AC
Sbjct: 880 WPHWSEPKNKSKSKIYHSNRVLGKLYDEVKK-----EPFHAAWDLP-FDQRILTACEPSD 933
Query: 903 KGYYD--QYRWEMKEAIDKCTVEREEAAELVI 932
+ D + + E EAI + + E I
Sbjct: 934 RMLADAREVKAEYDEAIQRIMTQHGIKTEFEI 965
>gi|159127939|gb|EDP53054.1| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus fumigatus
A1163]
Length = 1423
Score = 103 bits (256), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 159/661 (24%), Positives = 256/661 (38%), Gaps = 145/661 (21%)
Query: 257 DNILLVKF-DEELGGHRSS---NNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEK 312
D L V+F DE+L G +S N ++ +++ GI++G R Y F F +
Sbjct: 521 DRFLRVRFTDEKLLGRINSTIDNTMDEVFTRIKRALANGIVIGDRRYEFLAFGN------ 574
Query: 313 KKDPSTSPVKCYFVRMESSAFIDMGYQYI--LSGKTVHEARYMFMHVRTVSSVANYMSRL 370
S F + G + L T R + +VA + +RL
Sbjct: 575 ------------------SQFREHGAYFFAPLPSLTAANIRAWMGTFNDIRNVAKHAARL 616
Query: 371 SLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCP 430
S T + + I I+D V ++G +DG G IS+ LA
Sbjct: 617 GQCFSTTRA--IAGCPVQIRLIDD----------VVRNGYTF--SDGVGRISKFLA---- 658
Query: 431 TYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLL 490
+ EL+ RT S G+PP Q RL KG L
Sbjct: 659 ----------------QMAASELKI------RTPS--GDPPSAFQFRL----GGCKGMLT 690
Query: 491 LNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGG 550
++ + Q + IR S K + N LE+++ S T L+R LI +LS G
Sbjct: 691 VSPEAQRQEVHIRKSQYKFAS--------VHNGLEIIRWSQYSMAT-LNRQLIIVLSSLG 741
Query: 551 VPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMD-YDFTSARMILSGI-SLDEPYL 608
+ + F D LR L + AL Y + ++M+L G S EP++
Sbjct: 742 IQDSVFHDKLRAMLQSLNESMESDSQALCWLKKYVDPNQMTLVVSQMVLDGFRSSREPFV 801
Query: 609 QHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEKV-- 665
+ + K L + K+ + + L+G +D TGIL+ I K G EK+
Sbjct: 802 TSIMRLWKAWHLKYLKEKAKIVIEKGANLLGCMDETGILRGYSEWIPAK-GASDEEKLAA 860
Query: 666 -----------------------LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFF 702
++ RNP LH GDI V++A V +L K + F
Sbjct: 861 LPEIFVQIHHPDTGKCEVIEGVCILARNPSLHPGDIRVVRAVNVPQLSHL----KDVVVF 916
Query: 703 PCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRL---IDFS 759
P G R + +GGD DGD Y V + +L+ E W +++K D +
Sbjct: 917 PQTGDRDIPSTCSGGDLDGDDYLVIWDQDLV-----PEDWFRKPMKYTSDKAQDLDQDVT 971
Query: 760 LEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLIN 819
+ + S F L++ F P A + A W DR E +E +RL
Sbjct: 972 VNHITS-FFVLYMKNDFLPRIAHAHLA--W---ADRL---------EDGVNEEKCIRLAQ 1016
Query: 820 IYYDALDAPKKSGIKVEVPEDLKVEKFPCYM---RRDESVSFESTSVLGTIYNTVKSYEA 876
++ DA+D K+G + L+ + +P +M + + + ++S +LG +Y+ V+ +
Sbjct: 1017 LHSDAVDY-NKTGKPANMARSLQPKVWPHFMEKKHKPKEMIYKSNKILGQLYDAVERIDF 1075
Query: 877 V 877
V
Sbjct: 1076 V 1076
>gi|327353920|gb|EGE82777.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
Length = 1672
Score = 102 bits (255), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 149/651 (22%), Positives = 246/651 (37%), Gaps = 137/651 (21%)
Query: 257 DNILLVKF-DEELGGHRSSNNWNDS------YSKYNEIAREGILVGLRCYHFFVFKDGGK 309
D L V+F DE+ G NN +S Y++ + GI +G R Y F F +
Sbjct: 715 DRFLRVRFCDEKYIGKIYPNNSGNSQCMEKVYARVLRTLQHGITIGDRRYEFLAFGNSQL 774
Query: 310 EEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSR 369
E YF L T R + + VA Y +R
Sbjct: 775 REHG---------AYFFAS-------------LPHLTAANIRAQMGDLNNIRVVAKYAAR 812
Query: 370 LSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKC 429
L S T V + I++I+D +++G V+ DG + T I DL +K
Sbjct: 813 LGQCFSTTRA--VTSCPVQIKKIDD---IERNG-YVFSDGVGRLSHFLTQMIQSDLGIKT 866
Query: 430 PTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTL 489
P+ GEPP + Q RL KG L
Sbjct: 867 PS------------------------------------GEPPSVFQFRL----GGCKGIL 886
Query: 490 LLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYG 549
++ + + + IR S K A + N LE+++ S+ T L+R LI +LS
Sbjct: 887 AVSPEARQREVHIRRSQFKFPA--------SHNGLEIIRHSHFSYAT-LNRQLILILSAL 937
Query: 550 GVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMD-YDFTSARMILSGISLD-EPY 607
G P+ F+ L L + +++ A+ + Y + A MI G EP+
Sbjct: 938 GTPDEVFIAKLSMMLANLEQAMTDEDKAVSLLQKYVDPNQMTLVLADMIRDGFQGSREPF 997
Query: 608 LQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEKV- 665
+ L + + K L + K+ + E +L+G +D + LK K E+V
Sbjct: 998 VSSLLELWRTWQIKYLKEKAKIAIDEGAFLLGCIDESKTLKGYFRSARPKANSTYQERVD 1057
Query: 666 ------------------------LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIF 701
++ RNP LH GDI V+KA L + +
Sbjct: 1058 CLPEIFVQVWRHSEGKYAVIEGLCILARNPSLHPGDIRVVKAVDAPALHHL----RDVVV 1113
Query: 702 FPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLE 761
P G R LA+ +GGD DGD Y V + +L ++ + N + ++D +
Sbjct: 1114 LPQTGDRDLANICSGGDLDGDDYIVIWDKSMLP----TDWFHEPMDNCAPKPEVLDRDV- 1168
Query: 762 ELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIY 821
++ K ++N + C + + L D +E E ++L ++
Sbjct: 1169 -TVDDITKFYVNY---------MQNCCLSQIARAHMALAD--FQEDGVKDEKCIQLAALH 1216
Query: 822 YDALDAPKKSGIKVEVPEDLKVEKFPCYMRR---DESVSFESTSVLGTIYN 869
A+D KSGI V + +LK + +P +M R +++ + S +LG +Y+
Sbjct: 1217 SAAVDY-NKSGIPVRMTRNLKPKVWPHFMERKMKNKNAEYRSAKILGQLYD 1266
>gi|146323311|ref|XP_754927.2| RNA-directed RNA polymerase (Sad-1) [Aspergillus fumigatus Af293]
gi|129558353|gb|EAL92889.2| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus fumigatus
Af293]
Length = 1423
Score = 102 bits (255), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 159/661 (24%), Positives = 256/661 (38%), Gaps = 145/661 (21%)
Query: 257 DNILLVKF-DEELGGHRSS---NNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEK 312
D L V+F DE+L G +S N ++ +++ GI++G R Y F F +
Sbjct: 521 DRFLRVRFTDEKLLGRINSTIDNTMDEVFTRIKRALANGIVIGDRRYEFLAFGN------ 574
Query: 313 KKDPSTSPVKCYFVRMESSAFIDMGYQYI--LSGKTVHEARYMFMHVRTVSSVANYMSRL 370
S F + G + L T R + +VA + +RL
Sbjct: 575 ------------------SQFREHGAYFFAPLPSLTAANIRAWMGTFNDIRNVAKHAARL 616
Query: 371 SLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCP 430
S T + + I I+D V ++G +DG G IS+ LA
Sbjct: 617 GQCFSTTRA--IAGCPVQIRLIDD----------VVRNGYTF--SDGVGRISKFLA---- 658
Query: 431 TYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLL 490
+ EL+ RT S G+PP Q RL KG L
Sbjct: 659 ----------------QMAASELKI------RTPS--GDPPSAFQFRL----GGCKGMLT 690
Query: 491 LNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGG 550
++ + Q + IR S K + N LE+++ S T L+R LI +LS G
Sbjct: 691 VSPEAQRQEVHIRKSQYKFAS--------VHNGLEIIRWSQYSMAT-LNRQLIIVLSSLG 741
Query: 551 VPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMD-YDFTSARMILSGI-SLDEPYL 608
+ + F D LR L + AL Y + ++M+L G S EP++
Sbjct: 742 IQDSVFHDKLRAMLQSLNESMESDSQALCWLKKYVDPNQMTLVVSQMVLDGFRSSREPFV 801
Query: 609 QHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEKV-- 665
+ + K L + K+ + + L+G +D TGIL+ I K G EK+
Sbjct: 802 TSIMRLWKAWHLKYLKEKAKIVIEKGANLLGCMDETGILRGYSEWIPAK-GASDEEKLAA 860
Query: 666 -----------------------LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFF 702
++ RNP LH GDI V++A V +L K + F
Sbjct: 861 LPEIFVQIHHPDTGKCEVIEGVCILARNPSLHPGDIRVVRAVNVPQLSHL----KDVVVF 916
Query: 703 PCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRL---IDFS 759
P G R + +GGD DGD Y V + +L+ E W +++K D +
Sbjct: 917 PQTGDRDIPSTCSGGDLDGDDYLVIWDQDLV-----PEDWFRKPMKYTSDKAQDLDQDVT 971
Query: 760 LEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLIN 819
+ + S F L++ F P A + A W DR E +E +RL
Sbjct: 972 VNHITS-FFVLYMKNDFLPRIAHAHLA--W---ADRL---------EDGVNEEKCIRLAQ 1016
Query: 820 IYYDALDAPKKSGIKVEVPEDLKVEKFPCYM---RRDESVSFESTSVLGTIYNTVKSYEA 876
++ DA+D K+G + L+ + +P +M + + + ++S +LG +Y+ V+ +
Sbjct: 1017 LHSDAVDY-NKTGKPANMARSLQPKVWPHFMEKKHKPKEMIYKSNKILGQLYDAVERIDF 1075
Query: 877 V 877
V
Sbjct: 1076 V 1076
>gi|302814495|ref|XP_002988931.1| hypothetical protein SELMODRAFT_235652 [Selaginella moellendorffii]
gi|300143268|gb|EFJ09960.1| hypothetical protein SELMODRAFT_235652 [Selaginella moellendorffii]
Length = 755
Score = 102 bits (255), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 111/407 (27%), Positives = 184/407 (45%), Gaps = 77/407 (18%)
Query: 500 IQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFF--- 556
+ +RPSM K S+ T + LE KT P +YL+R +I+LLS VP+ F
Sbjct: 240 LSLRPSMSKFP-----SEQTTLDVLE--KTRYIP--SYLNREIISLLSTLEVPDEVFERM 290
Query: 557 ----LDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGIS-LDEPYLQ-- 609
+++L L D+ + + L+V Y G + + M+L+G S + EPY++
Sbjct: 291 QAHQVELLDRMLLDSAATY----DVLRVL--YAGECHKLLVS-MVLAGFSPVTEPYMRSL 343
Query: 610 ---HRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQ-VSWEK- 664
R + L+ EKKS ++ V + LMG +D +L+ + + + Q V E+
Sbjct: 344 LQAFRAAQLLSLEKKS----RIFVPKGRLLMGCLDEQRVLRYGQCFVQVSPLQGVPVEEE 399
Query: 665 -------------------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCN 705
V+V +NP LH GD+ VL+A V EL V I FP
Sbjct: 400 IHCDRGVTARNQAFAVTGSVVVAKNPCLHPGDVLVLEAVDVPELHHMVD----CIVFPQQ 455
Query: 706 GPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELES 765
GPR +E +G D DGD YFVS + L+ + + + + LEE++
Sbjct: 456 GPRPHPNECSGSDLDGDQYFVSWDSALIPPKRHPPMNYEAPPAMELDHSV---RLEEIQ- 511
Query: 766 ELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDAL 825
+ F+N + +D + L L D S E + L +Y A+
Sbjct: 512 ---EFFVNW---------ITSDSLGVIAHAHLALSDWS--ELQTRDPKCMELARLYSVAV 557
Query: 826 DAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVK 872
D P K+G+ +P +L+ E++P +M + ++ ST V+G +Y +++
Sbjct: 558 DFP-KTGVPAVMPPELRPEQYPDFMEKRNKRTYISTRVIGKLYRSIR 603
>gi|358384867|gb|EHK22464.1| hypothetical protein TRIVIDRAFT_28428 [Trichoderma virens Gv29-8]
Length = 1158
Score = 102 bits (255), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 158/647 (24%), Positives = 254/647 (39%), Gaps = 137/647 (21%)
Query: 257 DNILLVKFDEELGGHR---SSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKK 313
D L V+F EE+ R +S N D + K EGI +G R Y F F
Sbjct: 364 DRFLRVQFVEEMESGRIAMTSRNKEDVWKKILRTLYEGIQIGDRRYEFLAFG-------- 415
Query: 314 KDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLI 373
S+ +C A+ +I + + R V + VA + +RL
Sbjct: 416 ---SSQLRQC-------GAYFFCPTDHI----SCDDIRRWMGEVGHIRIVAKHAARLGQC 461
Query: 374 LSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYV 433
S T ++ ++ RI D + ++G TDG G ISE +A +
Sbjct: 462 FSTTREMR-GLPVPDVRRIPD----------IERNGYCF--TDGVGMISEFMA-----RM 503
Query: 434 YKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNK 493
E+ T D TE P Q R+ KG L++
Sbjct: 504 IIEEMTLDVYTE-------------------------PTAFQFRM----GGCKGVLVVWP 534
Query: 494 KLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPE 553
+ + IR S K KAD LE++K + T L+R I +L GV
Sbjct: 535 QAKKGEVYIRESQEKFKAD--------VKGLEIIKCAKYSSAT-LNRQTITILECLGVST 585
Query: 554 IFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTS---ARMILSGISLD---EPY 607
FL IL + N N + V+ +D + ++ A ++ SG D EP+
Sbjct: 586 PAFLAILEKQISLYEEAMKN--NNVAVNILTKCVDENQSTLILAELLQSGFKTDTVQEPF 643
Query: 608 LQHRLSILMKEEKKSLQ-AGKLPVTESYYLMGTVDPTGILKSN----------------E 650
+ + L++ K L+ ++P+ +S +++G VD TGIL+ + +
Sbjct: 644 VTNLLALWRSWSLKLLRDKARIPIEKSAFVLGCVDETGILRGHSNATEGTVDKDINKLPQ 703
Query: 651 VCIILKDGQV-----SWEKV-LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPC 704
+ + + D +V + E V +V RNP LH GDI V++A + EL K + FP
Sbjct: 704 IFLQVSDSKVYDQANAIEGVCIVGRNPSLHPGDIRVVEAVDIPELHHL----KDVVVFPS 759
Query: 705 NGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELE 764
G R + + ++GGD DGD +F+ P L+ W + N S+ S L+
Sbjct: 760 TGDRPVPNMLSGGDLDGDDFFIIWEPTLI-----PTEWNHPAMNYSSP------SPATLD 808
Query: 765 SELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDA 824
++ L F + + D + L L D + + LRL ++ A
Sbjct: 809 RDVNANDLRDFF----VRYMQNDVLPLIATAHLGLADSDGPK----SDICLRLAELHSQA 860
Query: 825 LDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTV 871
+D PK P +++P +M D+ V ++S LG IYN V
Sbjct: 861 VDYPKTGEPAEWNPGLHNPKEWPHFM--DKKVCYKSKKALGAIYNRV 905
>gi|377347180|dbj|BAL63010.1| RNA-dependent RNA polymerase 1 [Cucumis sativus]
Length = 1115
Score = 102 bits (255), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 168/697 (24%), Positives = 293/697 (42%), Gaps = 145/697 (20%)
Query: 216 LKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELG-DDNILLVKF-DEELG---- 269
L + G +++ + T F GP +N + L+R DN L V F DEELG
Sbjct: 357 LTLNEGLVYVHRVQV-TPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYS 415
Query: 270 ---GHRSSNNWNDSYSKYNE----IAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVK 322
R+S++ D +K + + R+GI +G + + F + S+S ++
Sbjct: 416 TELSPRASSSLEDGKTKILKRILSVLRDGITIGDKKFEFLAY------------SSSQLR 463
Query: 323 CYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLIL-SKTMKLE 381
E++A++ + + K R + +VA Y +RL S T L
Sbjct: 464 ------ENAAWMFAPKNELTAAKI----RQWMGDFHNIRNVAKYAARLGQPFGSSTETLS 513
Query: 382 VDFSRINIERIEDEPCRDKDG-NVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTN 440
V SR ++ I D G N V+ +DG G I+ A K +KC
Sbjct: 514 V--SRREVKVIPDIEVESGSGVNYVF--------SDGIGKIAASFARKV-----AKKC-- 556
Query: 441 DDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTI 500
+ T S + Q+R Y G KG + ++ P ++
Sbjct: 557 ------------------GIRHTPSAF-------QIR--YAG--FKGVISVD---PTSSV 584
Query: 501 QI--RPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLD 558
++ R SM+K ++ T L+V+ S +L+R LI LLS GV + F
Sbjct: 585 KLSLRNSMLKYES--------TDTKLDVLSWSKY-HPCFLNRQLITLLSTLGVQDHVFES 635
Query: 559 ILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLD-EPYLQHRLSILMK 617
+ +D+ +FS+ A + + M+L G D EP+L+ L +
Sbjct: 636 KQQELIDELDTIFSDPLKAQQALELMSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRE 695
Query: 618 EEKKSLQA-GKLPVTESYYLMGTVDPTGILKSNEV---CII---LKDGQVSWEK------ 664
+ L+ ++ + +MG +D T L+ EV C L D +V +++
Sbjct: 696 SKLMELRMKSRIFIPNGRAMMGCLDETRNLEYGEVFWQCSAHQQLHDDRVIFKRIKSNRH 755
Query: 665 ------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGD 718
V+V +NP LH GD+ VL A V L + + FP G R +E +G D
Sbjct: 756 FIVTGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMID----CVVFPQKGSRPHPNECSGSD 811
Query: 719 FDGDMYFVSRNPELL--KHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRF 776
DGD+YFV +P+L+ + + + S+ L D ++EE++ +N
Sbjct: 812 LDGDIYFVCWDPDLIPPQQVEPMDYTPVPSQVLDH-----DVTMEEVQEYFANYMVN--- 863
Query: 777 CPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVE 836
++ + A+ A D+ E K AM ++L ++ A+D PK +G+
Sbjct: 864 ---DSLGIIANAHTAFADK---------EPKKAMSNPCIQLAKLFSIAVDFPK-TGVPAL 910
Query: 837 VPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKS 873
+P +L+V+++P +M + + V++ES +VLG ++ + S
Sbjct: 911 IPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDS 947
>gi|119493033|ref|XP_001263772.1| RNA-directed RNA polymerase (Sad-1), putative [Neosartorya fischeri
NRRL 181]
gi|119411932|gb|EAW21875.1| RNA-directed RNA polymerase (Sad-1), putative [Neosartorya fischeri
NRRL 181]
Length = 1599
Score = 102 bits (254), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 157/661 (23%), Positives = 253/661 (38%), Gaps = 145/661 (21%)
Query: 257 DNILLVKF-DEELGGHRSS---NNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEK 312
D L V+F DE+L G +S N ++ +++ GI++G R Y F F +
Sbjct: 697 DRFLRVRFTDEKLLGRINSTVDNTMDEVFTRIKRALANGIVIGDRRYEFLAFGN------ 750
Query: 313 KKDPSTSPVKCYFVRMESSAFIDMGYQYI--LSGKTVHEARYMFMHVRTVSSVANYMSRL 370
S F + G + L T R + +VA + +RL
Sbjct: 751 ------------------SQFREHGAYFFAPLPNLTAANIRAWMGTFNDIRNVAKHAARL 792
Query: 371 SLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCP 430
S T + + I I+D V ++G +DG G IS+ LA
Sbjct: 793 GQCFSTTRA--IAGCPVQIRLIDD----------VVQNGYTF--SDGVGRISKFLAQMAA 838
Query: 431 TYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLL 490
+ + K K +DD PP Q RL KG L
Sbjct: 839 SEL-KIKTPSDD---------------------------PPSAFQFRL----GGCKGMLT 866
Query: 491 LNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGG 550
++ + Q + IR S K A N LE+++ S T L+R LI +LS G
Sbjct: 867 VSPEAQRQEVHIRKSQYKFAA--------VHNGLEIIRWSQYSMAT-LNRQLIIVLSSLG 917
Query: 551 VPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMD-YDFTSARMILSGI-SLDEPYL 608
+ + F D LR L + AL Y + ++M+L G S EP++
Sbjct: 918 IQDRVFHDKLRAMLQSLNEAMESDSQALCWLKKYVDPNQMTLVVSQMVLDGFRSSREPFV 977
Query: 609 QHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEKV-- 665
+ + K L + K+ + + L+G +D TGIL+ + K G EK+
Sbjct: 978 TSIMRLWKAWHLKYLKEKAKIVIEKGANLLGCMDETGILRGYSERVPAK-GASDEEKLAA 1036
Query: 666 -----------------------LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFF 702
++ RNP LH GDI V++A V +L K + F
Sbjct: 1037 LPEIFVQIHRPDTGKCEVIEGVCILARNPSLHPGDIRVVRAVNVPQLSHL----KDVVVF 1092
Query: 703 PCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRL---IDFS 759
P G R + +GGD DGD Y V + +L+ E W + +++K D +
Sbjct: 1093 PQTGDRDIPSMCSGGDLDGDDYLVIWDQDLV-----PEDWFRKAMKYTSDKAQDLDQDVT 1147
Query: 760 LEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLIN 819
+ + S F L++ F P A + A W DR E +E +RL
Sbjct: 1148 VNHITS-FFVLYMKNDFLPRIAHAHLA--W---ADRL---------EDGVNEEKCIRLAQ 1192
Query: 820 IYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVS---FESTSVLGTIYNTVKSYEA 876
++ DA+D K+G + L+ + +P +M + ++S +LG +Y+ V+ +
Sbjct: 1193 LHSDAVDY-NKTGKPANMTRSLQPKVWPHFMEKKHKPKERIYKSNKILGQLYDAVERIDF 1251
Query: 877 V 877
V
Sbjct: 1252 V 1252
>gi|260803900|ref|XP_002596827.1| hypothetical protein BRAFLDRAFT_99723 [Branchiostoma floridae]
gi|229282087|gb|EEN52839.1| hypothetical protein BRAFLDRAFT_99723 [Branchiostoma floridae]
Length = 1922
Score = 102 bits (254), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 139/562 (24%), Positives = 226/562 (40%), Gaps = 117/562 (20%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKL-PPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKT 529
P Q+R Y G KG L + L I IR SM K +++ +LEV
Sbjct: 592 PSAFQIR--YGG--CKGVLAQDPSLGHTDLIHIRGSMKKFESEH--------KTLEVTSV 639
Query: 530 SNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDAR------GVFSNKRNALKVSFN 583
+ P L+R I LLS GVP+ F + L+ G + +V N
Sbjct: 640 TT-PGSLSLNRQAITLLSGLGVPDEEFFKLQERVLNQLAEMLLLDGAAVKALSGARVGIN 698
Query: 584 YGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSL---QAGKLPVTESYYLMGTV 640
+ + ++R+ L+ EP+ + L + + + L +LP E +MGT+
Sbjct: 699 FQALH----NSRISLTT----EPFFRSMLLAVYRNQMGELLRRTRIQLPAGEGRIMMGTM 750
Query: 641 DPTGILKSNEVCI-------------ILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVK 687
D TG L+ +V + I+ GQV+ V +NP H GD+ A V
Sbjct: 751 DETGKLQYGQVFLQYSRETDRPQAEKIVHQGQVT-----VTKNPCFHPGDMRKFTAVDVP 805
Query: 688 ELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSK 747
EL V I FP GPR DE++G D DGDMYFV+ L+ + T++
Sbjct: 806 ELRHMVD----CIVFPSRGPRPHPDEMSGSDLDGDMYFVTWREGLILPRENIPAMDFTAQ 861
Query: 748 NLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEK 807
+R + S++ + F A+ + D + + L D+ E K
Sbjct: 862 PKKVLRRPVQV------SDMIEFF---------AEYIRNDQLGLIANAHLVHADK--ETK 904
Query: 808 AAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTI 867
E + L ++ DA+D P K+G E+ DL+ +K+P +M + + + S ++G +
Sbjct: 905 GIFSERCMELAKLHSDAVDFP-KTGQCPELKGDLRPDKYPDFMMKSDKPQYRSEKIIGKL 963
Query: 868 YNTVKSYEAVDRSVTEIWKLPCF-DDGVPEACMTK-WKGYYDQYRWEMK----------- 914
+ ++ + R + P DDGV + + + ++ Y D + ++
Sbjct: 964 FRQCQALDNAQRFSPD----PVVEDDGVDQDLIREGFESYTDDAQTQLNIYNTKIRSIMS 1019
Query: 915 --------EAIDKCTV-----------EREEAAELVIEKYKQILYGA-AEF--------E 946
E + C + ER E E V ++K + AEF E
Sbjct: 1020 LYGISSEGEVVSGCILKVKQRLGLLKNERFEVTEYVRARFKTLWRKTRAEFFRQFDEKEE 1079
Query: 947 QST-RTLEEIYNEALAIYNITY 967
ST R EE +A A Y +TY
Sbjct: 1080 SSTDRRREEQLKKASAWYMVTY 1101
>gi|213407476|ref|XP_002174509.1| RNA-directed RNA polymerase Rdp1 [Schizosaccharomyces japonicus
yFS275]
gi|212002556|gb|EEB08216.1| RNA-directed RNA polymerase Rdp1 [Schizosaccharomyces japonicus
yFS275]
Length = 1213
Score = 102 bits (254), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 114/449 (25%), Positives = 191/449 (42%), Gaps = 51/449 (11%)
Query: 455 ANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRD 514
A+ S + RT S + F G KG L L PP ++ + D
Sbjct: 616 ASLSVMKRTASEMDNEEMFPSAVQFRMG-GYKGVLSL---APPTLLEYHKGNLVFTRDSQ 671
Query: 515 LSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNK 574
F LEV+K S + +L+ LI LL GVP F+D+ +N L + +
Sbjct: 672 EKFKSNFTVLEVIKVS-RFSHAHLNMQLITLLEGLGVPTSLFVDLAKNELKELTISLKDP 730
Query: 575 RNALKVSFNYGGMDYDFTS--ARMILSG-ISLDEPYLQHRLSILMKEEKKSL-QAGKLPV 630
R A+ + N+ +Y T A +I G + ++ + ++ +++ + +++ + +L V
Sbjct: 731 RRAVTLLRNHVD-EYRSTLILADLIACGFMQRNDSFTKNLINLYFEWVVRTIKEKQRLRV 789
Query: 631 TESYYLMGTVDPTGILKSN---------EVCIILKD----------GQVSWEKVL----V 667
E +LMG D TG LK + EV I + D G++ ++ V
Sbjct: 790 KEGAFLMGVADETGTLKGHYNDSVLPIPEVFIQITDPSKNADATVTGKIKTTIIMGLCVV 849
Query: 668 YRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVS 727
RNP LH GD+ V +A EL K I FP G S+ + AGGD DGD Y V
Sbjct: 850 VRNPALHPGDVRVCRAVRCNELLHL----KNVIVFPTTGDLSVTEMCAGGDLDGDEYTVI 905
Query: 728 RNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAAD 787
+P L ++ +A KR++ F E K F R+ + L ++
Sbjct: 906 WDPNFLPKIVNYPPYID-----NAAKRILTFKEGVPPIESIKAFF-VRYIKYESLGLISN 959
Query: 788 CWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFP 847
W+A D L+L ++ A+D P KSG+ +P++ + + +P
Sbjct: 960 SWKAWAH------DRVNNPDGIFGSICLKLSALHSTAVDYP-KSGVAAIMPQEYRPKAYP 1012
Query: 848 CYMRRDESVSFESTSVLGTIYNTVKSYEA 876
+M + E SF + + +G IY ++++
Sbjct: 1013 DFMEK-EFRSFPAMTAVGEIYRYASAFQS 1040
>gi|315307484|gb|ADU04145.1| hypothetical protein [Gossypium hirsutum]
Length = 1147
Score = 102 bits (254), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 104/407 (25%), Positives = 181/407 (44%), Gaps = 62/407 (15%)
Query: 500 IQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDI 559
+ +R SM+K ++ + L V K S + +L+R ++ L S G+ + F +
Sbjct: 595 MSLRDSMLKFESKVRM--------LNVTKWS-ESMPCFLNREIVTLFSTLGIKDEVFERM 645
Query: 560 LRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEE 619
L + +N+ AL + GG++ S +++ + EP +Q LS++++
Sbjct: 646 QEEQLCLLGKMLTNREAALDTLQSLGGVN----SKNILVEMLQFYEPNVQPYLSMMLQAH 701
Query: 620 KKSLQAG-----KLPVTESYYLMGTVDPTGILKSNEV--CIILKDGQVSWE--------- 663
++L + ++ V + L+G +D TG L +V CI +K ++
Sbjct: 702 YENLLSDLKSRCRIFVPKGRILIGCLDETGTLNYGQVYLCIKMKKAELECADQSYFRKVD 761
Query: 664 --------KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIA 715
KV+V +NP LH GD+ VL+A Y +LE+ + FP G R +E +
Sbjct: 762 EETAIVIGKVVVTKNPCLHPGDVRVLEAVYEPQLEEKGLVD--CLVFPQKGERPHPNECS 819
Query: 716 GGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLID--FSLEELESELFKLFLN 773
GGD DGD +F+S + +L+ ++E M + R++D +LEE++ +N
Sbjct: 820 GGDLDGDQFFISWDKDLIPC--QTEPPMDYT---GRRPRIMDHEVTLEEIQKFFVDYMIN 874
Query: 774 TRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGI 833
D A+ L D E A EN L L ++ A+D K+G
Sbjct: 875 -------------DTLGAISTAHLVHADR--EPDKACSENCLALATLHSMAVDF-AKTGA 918
Query: 834 KVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRS 880
E+P LK +FP +M+R + S+ VLG +Y + RS
Sbjct: 919 PAEMPRALKPREFPDFMQRGNKPMYTSSGVLGKLYRATINSTVQTRS 965
>gi|224089239|ref|XP_002308662.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222854638|gb|EEE92185.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1198
Score = 102 bits (254), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 112/431 (25%), Positives = 187/431 (43%), Gaps = 66/431 (15%)
Query: 469 EPPLLMQVRLFYNGTAVKGTLLLNKKLPPQ----TIQIRPSMIKVKADRDLSDGQTFNSL 524
+PP Q+R Y G KG + P Q + +R SM K +++ + L
Sbjct: 610 DPPCAYQIR--YAG--CKGVVAC---WPEQGDGIRLSLRSSMNKFQSNHTI--------L 654
Query: 525 EVVK-TSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFN 583
E+ T QP +L+R +I LLS VP+ F + + + + A V
Sbjct: 655 EICSWTRFQP--GFLNRQIITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDVAFDV-LT 711
Query: 584 YGGMDYDFTSARMILSGISLD-EPYLQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVD 641
+ +A M+ +G EP+L+ L+ + + L + ++ V +LMG +D
Sbjct: 712 ASCAEQGNVAAIMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLD 771
Query: 642 PTGILKSNEVCIIL--------------------KDGQVSWEKVLVYRNPGLHFGDIHVL 681
G+L+ + I + K+ QV V++ +NP LH GDI +L
Sbjct: 772 ELGVLEQGQCFIQVSNSYLENCFVKHGSKFSETKKNLQVVKGTVVIAKNPCLHPGDIRIL 831
Query: 682 KATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESER 741
+A L + FP G R A+E +G D DGD+YFV+ + L+ K S
Sbjct: 832 EAVDAPGLHHLYD----CLVFPQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKRS-- 885
Query: 742 WMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGD 801
W+ + + K+L + E F AK++A + A+ + + D
Sbjct: 886 WIPMQYDAAEAKQLTRPVNHQDIVEFF------------AKNMANENLGAICNAHVVRAD 933
Query: 802 ESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFEST 861
S E A+ E L L + A+D PK +G V +P DLK + +P +M ++E S++S
Sbjct: 934 LS--EYGALDEKCLTLAELAATAVDFPK-TGKIVSMPSDLKPKIYPDFMGKEEHQSYKSK 990
Query: 862 SVLGTIYNTVK 872
+LG +Y +K
Sbjct: 991 KILGRLYRQIK 1001
>gi|258573507|ref|XP_002540935.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237901201|gb|EEP75602.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 1521
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 153/657 (23%), Positives = 253/657 (38%), Gaps = 144/657 (21%)
Query: 257 DNILLVKF-DEELGGHRS---SNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEK 312
D L V+F DE G S +N ++ +++ GI +G R Y F F +
Sbjct: 603 DRFLRVRFTDERFEGRISPSHNNTMDEVFTRIKRAMMNGITLGDRHYEFLAFGN------ 656
Query: 313 KKDPSTSPVKCYFVRMESSAFIDMGYQYI--LSGKTVHEARYMFMHVRTVSSVANYMSRL 370
S F + G + L T R H + +A + +RL
Sbjct: 657 ------------------SQFREHGAYFFASLPHLTASNIRAWMGHFSDIKEIARHAARL 698
Query: 371 SLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCP 430
S T V + I IED + ++G +DG G IS LA
Sbjct: 699 GQCFSTTRA--VTGCPVQIREIED----------IERNGHTF--SDGVGRISRFLAQMIM 744
Query: 431 T-YVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTL 489
T + K C GEPP + Q RL KG L
Sbjct: 745 TEFKIKTPC-----------------------------GEPPSVFQFRL----GGCKGIL 771
Query: 490 LLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYG 549
++ + + + IR S K A N LEV++ S+ + L+R LI +LS
Sbjct: 772 TVSPEAQRREVHIRKSQYKFPA--------IHNGLEVIRHSHFSMAS-LNRQLIVVLSAL 822
Query: 550 GVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMD-YDFTSARMILSGISLD-EPY 607
VP+ F++ LR L++ S++ A+ + Y + A M+ G EP+
Sbjct: 823 EVPDEIFIEKLRVMLENLELAMSSEAQAIHLLHKYVDPNQMTLVLAEMVQDGFQASKEPF 882
Query: 608 LQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKS--NE-------------- 650
+ L + + K L + K+ + + L G +D TG LK N+
Sbjct: 883 VTSLLELWRAWQIKYLKEKAKIIIEDGACLFGCLDETGTLKGFFNDKIPAANASYEEKLE 942
Query: 651 ------VCIILKDGQVSWEKV----LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAI 700
V I D +E + +V RNP LH GDI V+KA V L K +
Sbjct: 943 SLPEVFVQISRADNGGKYEVIEGPCIVARNPSLHPGDIRVVKAVNVPALHHL----KDVV 998
Query: 701 FFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKH--FKESERWMSTSKNLSANKRLIDF 758
FP G + + +GGD DGD Y + + +LL F++ ++ ++K ++ D
Sbjct: 999 VFPQTGDKDVPSMCSGGDLDGDDYLIIWDQDLLPKNWFRQPMDYVPSTKAHCLSR---DV 1055
Query: 759 SLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLI 818
++ ++ S F ++ P A LA W + E+ ++L
Sbjct: 1056 TVNDITS-FFVTYMKNDRLPQIA--LAHLAWADYL------------ERGVNDPKCMQLA 1100
Query: 819 NIYYDALDAPKKSGIKVEVPEDLKVEKFPCYM---RRDESVSFESTSVLGTIYNTVK 872
++ A+D K+GI ++ +DL K+P +M + + + S +LG +Y+ ++
Sbjct: 1101 ELHSAAVDY-NKTGIPAKMTKDLIPRKWPHFMEKKHKPKEAQYISQKILGQLYDRLE 1156
>gi|224099569|ref|XP_002311535.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222851355|gb|EEE88902.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1139
Score = 102 bits (253), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 196/836 (23%), Positives = 331/836 (39%), Gaps = 176/836 (21%)
Query: 219 DSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGD-DNILLVKF-DEELGGHRSSNN 276
D G H+ I T F+GP +N + L++ D DN L V F DE+L S+N
Sbjct: 372 DDGLVHVRRVQI-TPTKVYFRGPEVNLSNRVLRKYPDDIDNFLRVSFVDEDLDKLFSTNI 430
Query: 277 WNDSYSK--------YNEI---AREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYF 325
++S Y I R GI++G + + F F S+S ++
Sbjct: 431 SPRTFSAIEGRQTKIYQRILSTQRNGIVIGSKKFEFLGF------------SSSQLR--- 475
Query: 326 VRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFS 385
ESS ++ +G + R R + +VA Y +RL + + +
Sbjct: 476 ---ESSLWMFASR----TGLRAADIRRWMGDFREIKNVAKYAARLGQSFGSSRE-SFNID 527
Query: 386 RINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTE 445
IE+I D R G V Y + +DG G IS LA
Sbjct: 528 EKEIEKIPDIEVRS--GGVDY------VFSDGIGKISAALA------------------- 560
Query: 446 RSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPS 505
SI +K +F+ P Q+R Y G KG + ++ + + +R S
Sbjct: 561 HSIAQKFGFLSFT------------PSAFQIR--YGG--YKGVVAVDPT-SLKKLSLRRS 603
Query: 506 MIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALD 565
M K K+ T SL+++ S + YL+R +I LLS GV + F + A+
Sbjct: 604 MSKYKS--------TNTSLDILGWSKY-QACYLNREVITLLSTLGVRDHIFQRKQKEAIA 654
Query: 566 DARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLD-EPYLQHRLSILMKEEKKSLQ 624
+ ++ +A + + M+ G EP+L L + L+
Sbjct: 655 QLNAILTDPSSAQEALELMAPGESTNVLKEMLACGYKPGAEPFLAMMLQTFCASKLLDLR 714
Query: 625 A-GKLPVTESYYLMGTVDPTGILKSNEVCI------------------ILKDGQVSWEKV 665
++ + + +MG +D T L + + +++ Q+ K+
Sbjct: 715 TRARIFIPKGRAMMGCLDETRTLGYGQAFVQYSSARHGQFRDHSRGGEAVRNTQILKGKL 774
Query: 666 LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYF 725
+V +NP LH GD+ VL+A V L V I FP G R A+E +G D DGD+YF
Sbjct: 775 IVAKNPCLHPGDVRVLEAVNVPALHHMVD----CIVFPQKGKRPHANECSGSDLDGDVYF 830
Query: 726 VSRNPELL--KHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRF-CPSNAK 782
V +P+L+ + F + + + L D ++EE++ LN NA
Sbjct: 831 VCWDPDLIPPRTFPPMDYTAAPTTILDH-----DVTIEEVQEYFTDYLLNDSLGIICNAH 885
Query: 783 SLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLK 842
++ AD D + E E + RL +I A+D P K+G+ ++P +L+
Sbjct: 886 TVFAD-----RDPLMARSKECIE--------LARLSSI---AVDFP-KTGVPAKIPRELR 928
Query: 843 VEKFPCYMRR-DESVSFESTSVLGTIYNTVK------------SYEAVDRSVTEIWKLPC 889
V+++P +M + + ++ES VLG ++ V+ + E RS ++
Sbjct: 929 VKEYPDFMEKAADKRTYESQRVLGKLFRDVRDIAPDTSPVRSFTKEMARRSYDPDMEVDG 988
Query: 890 FDDGVPEACMTKWKGYYDQYRWEMKEAID-KCTVEREEAAELVIEK-------YKQILY- 940
F + EA +K YD M + K E + + + K + I Y
Sbjct: 989 FQKHIDEAF--HYKSVYDNKLGNMMDYYGIKTEAEIISGSIMKVGKSFDKKRDFDSINYS 1046
Query: 941 -------GAAEFEQSTRTLEEIYNEALAIYNITYDLAASRR------QVSYCSFAW 983
A F++S + +++Y +A A Y +TY + R +V + SF W
Sbjct: 1047 IRSLRKQARAWFDESDNSPDDLYAKASAWYYVTYHPSYWGRYNEGMNRVHFLSFPW 1102
>gi|398388269|ref|XP_003847596.1| RNA-directed RNA polymerase, partial [Zymoseptoria tritici IPO323]
gi|339467469|gb|EGP82572.1| RNA-directed RNA polymerase [Zymoseptoria tritici IPO323]
Length = 959
Score = 102 bits (253), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 164/696 (23%), Positives = 264/696 (37%), Gaps = 171/696 (24%)
Query: 256 DDNILLVKF-DEELGGHRSSNN---WNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEE 311
+D + VKF DE+ G S + N+ +S+ + GI V R Y F F + E
Sbjct: 263 EDRFMRVKFTDEKHKGQLQSQDGQAMNEVFSRIKQAMTHGIRVADRHYEFLAFGNAQFRE 322
Query: 312 KKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLS 371
YF +M Q++ + + +VA Y+SRL
Sbjct: 323 HG---------AYFFASTPDLNANMIRQWM-------------GNFTQIKNVAKYISRLG 360
Query: 372 LILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPT 431
+ T + +N+ERI D V ++G TDG G IS LA
Sbjct: 361 QCYTTTRAIP---HSVNVERIPD----------VERNGYCF--TDGVGKISPLLARMVAD 405
Query: 432 YVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLL 491
+ + C P + Q R+ KG L +
Sbjct: 406 HFRLDNC--------------------------------PSVYQFRM----AGCKGVLAV 429
Query: 492 NKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGV 551
+ L T+QIRPS K A+ F+ LE+ K S Q L+ LI ++S GV
Sbjct: 430 DPSLKGMTVQIRPSQEKFPAE--------FHGLEICKMS-QFSAANLNVQLILVMSSLGV 480
Query: 552 PEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLD------E 605
P+ F++ R+ L D +++ ALK+ + DF + L+ I LD +
Sbjct: 481 PDNVFVNKYRDMLADLALAMTDEEMALKLL----QKNIDFNQMTIYLATIILDGFMATKD 536
Query: 606 PYLQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKSN--------------- 649
P+ L + K L + ++ V + ++ G D TG L+
Sbjct: 537 PFTISCLRLWRSWNLKYLKEKARVFVDQGAFVFGVTDETGTLQGQFDGFKTDEGDMAVPP 596
Query: 650 ---EVCIILKDGQ------VSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAI 700
++ + + D V L RNP LH GDI +++A V L K +
Sbjct: 597 TLPQIFLQIPDPNAKGGYTVIQGPCLFARNPSLHPGDIRMVEAVDVPALHHL----KDCV 652
Query: 701 FFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSL 760
P G R LA+ +GGD DGD Y + + +L ++ ++
Sbjct: 653 VLPQTGDRDLANMCSGGDLDGDDYLICWDADLFPPVSDTG----------------PVTV 696
Query: 761 EELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINI 820
+++ S F+N + +N A + D+ E+ E L+L N+
Sbjct: 697 DDMTS----FFVN--YIKNNKLGQIASHHRFWADK---------EDDGVKNEKCLQLANL 741
Query: 821 YYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRS 880
+ A+D K+G+ +P +LKV+ P + S+ S VLG +Y+ VK +D +
Sbjct: 742 HSLAVDY-VKTGVPATLPVELKVKARPHWAEA-RGQSYTSRKVLGQLYDEVK----LD-N 794
Query: 881 VTEIWKLP------CFDDGVPE--ACMTKWKGYYDQ 908
W+LP D PE A T+ K YD+
Sbjct: 795 FQPAWELPFDARILTADTPTPELIAGATEVKAEYDE 830
>gi|449301850|gb|EMC97859.1| hypothetical protein BAUCODRAFT_67567, partial [Baudoinia
compniacensis UAMH 10762]
Length = 1035
Score = 101 bits (252), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 169/725 (23%), Positives = 285/725 (39%), Gaps = 173/725 (23%)
Query: 257 DNILLVKF-DEELGG---HRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEK 312
D+ L VKF DE G + S NN ++ +++ + GI + R Y F F + E
Sbjct: 318 DHFLRVKFTDERYKGKVMNNSDNNQDEIFTRVKRTLQNGIQIAGRHYDFLAFGNSQFREN 377
Query: 313 KKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSL 372
YF LS + A F H+ TV A Y SRL
Sbjct: 378 G---------AYFFASTPD----------LSAADIRVAMGTFTHITTV---AKYASRLGQ 415
Query: 373 ILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTY 432
S T L R+ ++ + D + ++G TDG G +S +A
Sbjct: 416 CFSTTRGLSY---RVRVDALAD----------ITRNGYTF--TDGVGKVSPFIAQM---- 456
Query: 433 VYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEP------PLLMQVRLFYNGTAVK 486
VA+T +G P P ++Q RL K
Sbjct: 457 ---------------------------VAQT---FGFPNAFVDYPSVIQFRL----GGYK 482
Query: 487 GTLLLNKKLPPQ---TIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLI 543
G L ++ L + IQ RPS +K A ++ LE+ + S Q YL++ +I
Sbjct: 483 GVLAVDPTLTGKDNMVIQTRPSQMKFPA--------VYHGLEICRLS-QFTAAYLNQQII 533
Query: 544 ALLSYGGVPEIFFLDILRNALDDARGVFSNKRNAL-----KVSFNYGGMDYDFTSARMIL 598
+LS GV + F+ ++ AL D + ++ A K+ +N+ + A+MI
Sbjct: 534 LVLSARGVEDKVFVVKVQQALKDLQDAMIDEDKAKDQLCKKIDYNHTTL----VLAQMID 589
Query: 599 SG-ISLDEPYLQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKSN------- 649
G +++ +P++ + + K L + ++ V E +++G D T L+ +
Sbjct: 590 DGFMAVRDPFMMSCMRLWRSWMVKYLKEKARIFVDEGAFVLGCTDETTTLRGDFNADNHT 649
Query: 650 --------------EVCIILKDGQVSWEK--VLVYRNPGLHFGDIHVLKATYVKELEDFV 693
++ + K G K L+ RNP LH GDI V++A V L
Sbjct: 650 VDLTDATPLPEIFLQIPDVAKKGSYVAVKGVCLLARNPSLHPGDIRVVRAIDVPALHHL- 708
Query: 694 GTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSAN- 752
K + P G R LA+ +GGD DGD + V + +L+ W + + A
Sbjct: 709 ---KNCVVLPQTGDRDLANMCSGGDLDGDDFLVIWDKQLI-----PPEWYHSPMDYQAPE 760
Query: 753 --KRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAM 810
K + +++ + S F T +N +A R+ T D +E
Sbjct: 761 PVKAELPITVDAITS-----FFVTYMKHNNVGIIAC------AHRY-TADDGFSEGVKDF 808
Query: 811 KENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNT 870
K L+L ++ A+D K+G+ +P +L+V K+P + R S+ S VLG +Y+
Sbjct: 809 K--CLQLAQLHSMAVDY-MKTGVPAVMPNELRVRKYPHWAERPGKSSYHSRRVLGQLYDA 865
Query: 871 VKSYEAVDRSVTEIWKLPCFDDGVPEACMTKWKGYYDQYRWEMKEAIDKCTVEREEAAEL 930
V+ + + W LP FD+ + A Q + +A + V +EA +
Sbjct: 866 VQRID-----LQPAWDLP-FDERILSAY---------QLDAVLLQAASEVKVRYDEAVQR 910
Query: 931 VIEKY 935
++ +Y
Sbjct: 911 IMAQY 915
>gi|342319755|gb|EGU11702.1| RNA-directed RNA polymerase 2 [Rhodotorula glutinis ATCC 204091]
Length = 1904
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 156/655 (23%), Positives = 259/655 (39%), Gaps = 112/655 (17%)
Query: 240 GPYLNQTRTHLQRELGDDNILLVKFDEELGGHRSSNNWNDSY--SKYNEIAREGILVGLR 297
GPYL T + ++ + + V E G S + +DS S+++ + R+G +G R
Sbjct: 1120 GPYLGDTNSIVRAYARPELFVSVAVRHEDGS--SLRDRDDSLIASRFSPLFRDGFELGGR 1177
Query: 298 CYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHV 357
+ F + G + C+F+ S F + + +++ +H F
Sbjct: 1178 SWRFLAWSSSGLKSSS---------CFFM----SPF-RLDDETLITPTFIHRTIGDFTGS 1223
Query: 358 RTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDG 417
T A YM+R++ S + K + + IED + DG +DG
Sbjct: 1224 ETALIPAKYMARIAQAFSSS-KPSLTLRPDQMLSIED---------ITAPDGSCF--SDG 1271
Query: 418 TGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVR 477
G IS LA ND + I + E PP Q R
Sbjct: 1272 VGLISPSLA-------------NDVVEKLGIKLGKEE--------------RPPTCFQFR 1304
Query: 478 LFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTY 537
L KGTL ++ L + + +RPS +K ++ T SLE+ T + Y
Sbjct: 1305 L----GGAKGTLQVDPTLEGKVVALRPSQVKFRS--------TLTSLEIAGTF-EAGPGY 1351
Query: 538 LSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYG-GMDYDFTSARM 596
L+R LI LL G+P FL + A R ++ +A+K+ ++ F SA
Sbjct: 1352 LNRPLITLLENLGIPADVFLKLQAKATAKIRKSRASLPSAVKLPRDWSLASGTRFVSALN 1411
Query: 597 ILS------GISLDEPYLQHRLSILMKEEKKSLQ-AGKLPVTESYYLMGTVDPTGILKSN 649
+L+ + P++ L + + ++ ++P+ Y L+G VD G L +
Sbjct: 1412 LLAKDQATRDAAFANPFVARCLDASVVHALRDIKYLARIPLPGCYNLVGVVDVDGCLAQD 1471
Query: 650 EVC--IILKDGQVSWEK--VLVYRNPGLHFGDIHVLKATYVKELEDFVGTS----KYAIF 701
E+ I DG + + + + R+P H GD +++A V +L G +
Sbjct: 1472 EIYARISRPDGSTEYLQGTIAISRSPTNHPGDCRLVRA--VGKLPKGAGERIRGLTNCVV 1529
Query: 702 FPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLID--FS 759
FP +GPRSL +AGGD DGD+Y + L +R + +A +D S
Sbjct: 1530 FPVHGPRSLPSMLAGGDLDGDVYLLLTEASGL--VPSPDRIAEPAAYDAAPTVKLDREVS 1587
Query: 760 LEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLIN 819
+E+ FK R V R L L D AE + L+L
Sbjct: 1588 VEDGGEFFFKYITQDRTG-------------LVATRQLLLADSHAE--GLFHPDCLKLAQ 1632
Query: 820 IYYDALDAPKKSGIKVE---VPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTV 871
++ + +DA KSG V+ VP + P ++ D S+ S+ LG +Y +
Sbjct: 1633 LHSNCVDA-AKSGSFVQQHAVPR-VTQRGLPDFLTNDAPDSYRSSKALGHLYRAI 1685
>gi|392569009|gb|EIW62183.1| RdRP-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 793
Score = 101 bits (251), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 101/353 (28%), Positives = 153/353 (43%), Gaps = 35/353 (9%)
Query: 500 IQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDI 559
I RPSM K + DG T LE+ + P +L+ LL GVP F +
Sbjct: 220 IAYRPSMYKYE------DGPTM--LEINNHNLPPAPAHLNVQFTVLLLSLGVPVDVFKRL 271
Query: 560 LRNALDDARGVFSNKRNAL---KVSFNYG---GMDYDFTSARMILSGISLDEPYLQHRLS 613
L++ +D + +++ AL K + G G++ + M+L+ L EPY++ RL
Sbjct: 272 LQDQVDIIGSIVTDREKALHYIKGELDAGVEDGLNQSLYA--MLLAQHDLSEPYVRQRLL 329
Query: 614 ILMKEEKKSLQAG-KLPVTESYYLMGTVDPTGILKSNEVCIIL-KDGQVSWEKVLVYRNP 671
+ + +SL+ L + +S Y+ G VD +L EV + L + V+V RNP
Sbjct: 330 KYQEVQYESLRRKMNLRIMDSCYVFGVVDEDSVLAPGEVYVNLPARSGILVRDVVVARNP 389
Query: 672 GLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPE 731
H GDI L+A +L + I FP GPRS+ D I+ GD DGDMYFV+ P
Sbjct: 390 SYHPGDIRKLRAVDRPQLRHH----RNCIVFPRKGPRSVPDTISSGDLDGDMYFVAWEPT 445
Query: 732 LL--KHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCW 789
L+ K R +S S L ++ + FL R+ S A+ W
Sbjct: 446 LIPSTEMKPVNRALSMSAAGHTATSASGRQLPDMPRAAVETFLQLRY--SRLLGRMANEW 503
Query: 790 QAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLK 842
+D+ + L A E RL+ + ALD K + +D K
Sbjct: 504 TKAVDKTVDL---------ANAEFPRRLVPLIEAALDIMKTGDDYWRLQDDFK 547
>gi|238015130|gb|ACR38600.1| unknown [Zea mays]
Length = 525
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 103/373 (27%), Positives = 167/373 (44%), Gaps = 55/373 (14%)
Query: 529 TSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMD 588
+ +QP Y++R +I+LLS G+ + F + ++ + ++ G+ +NK AL V GG D
Sbjct: 17 SKSQP--CYVNREIISLLSTLGIKDEVFESMQQDDMHESDGMLTNKEAALSVLGKIGGGD 74
Query: 589 YDFTSARMILSGISL-DEPYLQHRLSILMKEEKKSL----QAGKLPVTESYYLMGTVDPT 643
T+A M+L G EPYL L IL L K+ V + L+G +D T
Sbjct: 75 TK-TAADMLLQGYEPSSEPYL---LMILKAHRANRLTDIRTRCKIHVQKGRVLIGCLDET 130
Query: 644 GILKSNEVCIILK-----------------DGQ--VSWEKVLVYRNPGLHFGDIHVLKAT 684
L+ +V I + DG+ V KV + +NP LH GD+ VL+A
Sbjct: 131 CKLEYGQVYIRITKNHKEQKYSEQPFFCNDDGKTAVIVGKVAITKNPCLHPGDVRVLEAV 190
Query: 685 YVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMS 744
Y L D G + FP G R +E +GGD DGD++F++ + +L+ E+ +
Sbjct: 191 YDPGL-DARGLID-CVVFPQRGERPHPNECSGGDLDGDLFFITWDDKLI-----PEKVDA 243
Query: 745 TSKNLSANKRLID--FSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDE 802
+ R++D +LEE++ +N D A+ L D
Sbjct: 244 PMDYTATRPRIMDHAVTLEEIQKHFVSYMIN-------------DTLGAISTAHLIHADR 290
Query: 803 SAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTS 862
+ A ++L ++ A+D K+G E+P L+ +FP +M R E + S
Sbjct: 291 --DPLKARSPECVQLAALHSMAVDF-AKTGAPAEMPLALRPREFPDFMERWERPMYVSNG 347
Query: 863 VLGTIYNTVKSYE 875
VLG +Y +E
Sbjct: 348 VLGKLYRAALRHE 360
>gi|357477317|ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago truncatula]
gi|355509999|gb|AES91141.1| Rna-dependent RNA polymerase [Medicago truncatula]
Length = 1308
Score = 100 bits (250), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 111/422 (26%), Positives = 185/422 (43%), Gaps = 61/422 (14%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P Q+R Y G KG + +++ + + +R SM+K ++ N + V
Sbjct: 576 PSAFQIR--YGG--YKGVIAVDRH-SFKKLSLRKSMLKFESK---------NRMLCVTKW 621
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYD 590
++ +L+R +I+LLS G+ + L + + L + ++K AL V + G D +
Sbjct: 622 SESMPCFLNREIISLLSTLGIKDEALLALQEDQLQLLGKMLTDKEAALDVLESLNGADSN 681
Query: 591 FTSARMILSGISLD-EPYLQHRLSILMKEEKKSLQA-GKLPVTESYYLMGTVDPTGILKS 648
+M+ + EPYL L + L++ ++ V + L+G +D TG+L
Sbjct: 682 SILVKMLHRFYEPNSEPYLSMMLKAHYTYQLSDLKSRCRIFVPKGRVLIGCLDETGLLNY 741
Query: 649 NEVCIILK----------------DGQVSWE----KVLVYRNPGLHFGDIHVLKATYVKE 688
+V + + DG S KV+V +NP LH GDI VL A Y +E
Sbjct: 742 GQVFVRITVAKTKEKFGDENLRNVDGDDSTRIIVGKVVVTKNPCLHPGDIRVLDAVYSEE 801
Query: 689 LEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKN 748
LE+ + + FP G R +E +GGD DGD++F+S + +L+ ++E M +
Sbjct: 802 LEE--KGLRDCLVFPQKGHRPHPNECSGGDLDGDLFFISWDKDLIP--AQTENPMDYT-- 855
Query: 749 LSANKRLID--FSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEE 806
R++D +LEE+ +N D A+ L D E
Sbjct: 856 -GRRPRIMDHKVTLEEIHQFFVDYMIN-------------DTLGAISTAHLVHADR--EH 899
Query: 807 KAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGT 866
A L L ++ A+D K+G E+P LK +FP +M R E + S VLG
Sbjct: 900 DKAKSRKCLELAELHSMAVDF-AKTGAPAEMPRSLKPREFPDFMERFEKPMYISKGVLGK 958
Query: 867 IY 868
+Y
Sbjct: 959 LY 960
>gi|426197730|gb|EKV47657.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
Length = 1151
Score = 100 bits (249), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 156/663 (23%), Positives = 268/663 (40%), Gaps = 126/663 (19%)
Query: 219 DSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQR--ELGDDNILLVKFDEELGGH----R 272
D +H + T GP+ ++ ++R + +DN L V+F EE G R
Sbjct: 368 DEALCQTFHAMV-TPTTILLTGPFPERSNRVIRRYGKRNEDNFLRVEFREEDGLQYRLDR 426
Query: 273 SSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSA 332
N + + I +E I++ R + F + E +F R
Sbjct: 427 DVNGRASLRHRISPILKEKIVIAGRSFDFLAYSQSALREHS---------VWFCR----P 473
Query: 333 FIDMGYQYILSGKTVHEARY---MFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINI 389
F+D + + + + + + ++ A Y +RLS + T E R+
Sbjct: 474 FVDSDLGEVDAARIIQDLGTFDNLSYDKELINCPARYAARLSQAFTAT---EAATFRV-- 528
Query: 390 ERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSID 449
+EP KD + + + I TDG G +SED A + ++ +
Sbjct: 529 ----EEPQIRKD---IKTNDKQYIFTDGCGCMSEDFAREIWQTMHPKG------------ 569
Query: 450 RKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLP-PQTIQIRPSMIK 508
++ E +F P Q+R Y G+ KG L ++ KL ++ +RPSMIK
Sbjct: 570 -RDSEEDF-------------PRAYQIR--YAGS--KGMLSVDYKLKGSRSFAVRPSMIK 611
Query: 509 VKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDAR 568
D +E+V+ P Y +R LI LL GV D+L++ D A
Sbjct: 612 F-------DAPEAKEIEIVRGIKNPTPYYFNRPLIMLLEGLGVN----YDVLQHFQDKAV 660
Query: 569 GVFSNKRNALKVSF----NYG-GMDYDFTSARMILSGISLD----EPYLQHRLSILMKEE 619
+ AL+ + N+G G + S + + +D + + L + +
Sbjct: 661 AKTQDATRALQDAIILLENHGLGSSFRLASTMQNIIKLGIDALQSDAFYGRLLRVAVYHA 720
Query: 620 KKSLQA-GKLPVTESYYLMGTVDPTGILKSNEV--CIILKDGQVSWEK--VLVYRNPGLH 674
+ L+ ++P+ +++ L+G D L NE+ CI DG++ + + VLV R+P +H
Sbjct: 721 LRDLKNNARIPIPDAWTLVGVADEHNFLGKNEIFACIKKSDGEMIYLEGHVLVSRSPCIH 780
Query: 675 FGDIHVLKATYVKELEDF--VGTSKYAIFFPCNGPRSLADEIAGGDFDGDMY-----FVS 727
GD+ V+ A V + + + F G R + + GGD DGD+Y V
Sbjct: 781 PGDVQVVSAIGKPPKGSCFEVQSLQNTVVFSTKGIRPIPSCLGGGDLDGDIYNLLPLAVH 840
Query: 728 RNPELLKHFKESERWMSTSKNL---SANKRLIDFSLEELESELFKLFLNTRFCPSNAKSL 784
++ L++FK + K L S K + DF +E + S++ L
Sbjct: 841 KSLTPLRYFKPGKYTSGERKCLDKPSTMKDVADFVMEYIISDVIGL-------------- 886
Query: 785 AADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVE 844
V +R+L + D+S + LRL ++ DA+D P K+G V V E K+
Sbjct: 887 -------VANRWLVIADQS--QFGIQDRVCLRLAQLHSDAVDYP-KTGNPVSVAEIPKL- 935
Query: 845 KFP 847
KFP
Sbjct: 936 KFP 938
>gi|242221257|ref|XP_002476381.1| predicted protein [Postia placenta Mad-698-R]
gi|220724386|gb|EED78433.1| predicted protein [Postia placenta Mad-698-R]
Length = 1141
Score = 100 bits (249), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 153/669 (22%), Positives = 272/669 (40%), Gaps = 121/669 (18%)
Query: 233 KGNCTFKGPYLNQTRTHLQRELGDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIAREGI 292
+ N F+ Y Q + L+ D+ L+ +FD E+ G N + + +G+
Sbjct: 391 RSNRVFRR-YPGQEQNFLRVTFVDETRLMYRFDREVDGRGFINR------RVRHMLVQGL 443
Query: 293 LVGLRCYHFFVFKDGGKEEKK-------KDPSTSPVKCYFVRMESSAFIDMGYQYILSGK 345
+ R + F + +E +DP V+ S+ +G S +
Sbjct: 444 TIAGRHFEFLAYSQSALKEHAVWFVTPFRDPDGREVRA------STIIASLG-----SFR 492
Query: 346 TVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIE---DEPCRDKDG 402
E + ++ R Y +R+S + T S I++E E D +D G
Sbjct: 493 PAFEPQLIYCPAR-------YAARISQAFTATD------SSISVELEEVFYDPDIKDNTG 539
Query: 403 NVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVAR 462
+ TDG G IS LA R+I EL A R
Sbjct: 540 QYCF--------TDGVGRISPALA-------------------RAIS-SELRAKKRRARR 571
Query: 463 TESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFN 522
++ L Q+R KG L ++ +L ++I +RPSMIK A L+
Sbjct: 572 ARTYTR----LFQIRFM----GSKGMLSVDYQLSDRSIFLRPSMIKFDAPDSLN------ 617
Query: 523 SLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSF 582
+E+ + ++P K YL+R LI LL GVP F + +A+ DA G + ++ ++
Sbjct: 618 -VEIAQAFDKPGKYYLNRPLIMLLEGLGVPYEVFEALQDDAVQDAEGAVHSLESSARLLE 676
Query: 583 NYG-GMDYDFTSARMILSGISL----DEPYLQHRLSILMKEEKKSLQ-AGKLPVTESYYL 636
YG G + +S + + + L ++ + Q + + + L+ ++P+ + + L
Sbjct: 677 AYGLGASFRLSSTMVNMHRLGLRPLSEDIFWQQMMDFAVNHVLRELKHHARIPLPDGWTL 736
Query: 637 MGTVDPTGILKSNEV--CIILKD--GQVSWE-KVLVYRNPGLHFGDIHVLKAT-YVKELE 690
+G D G L+ E+ C+ D + E ++ R+P +H GD+ ++ A
Sbjct: 737 VGVADVHGYLEEGEIFACVDSPDLLEPIYLEGPTVISRSPTIHPGDVQLVHAIGRPPPGS 796
Query: 691 DFVGTS-KYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNL 749
F S + + F G R L + GGD DGD+Y V+ P L + + + S S
Sbjct: 797 PFEHESLRNGVVFSIKGERPLPSCLGGGDLDGDVYNVTTMPSL----RPARTYRSGSYKP 852
Query: 750 SANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAA 809
+ K + S E ++ ++N S+ + A W L + D+S+E
Sbjct: 853 AVKKTVDHPSTMEDVADFVAEYIN-----SDTLGIIAINW-------LIIADQSSE--GI 898
Query: 810 MKENMLRLINIYYDALDAPKKSG-IKVEVPEDLKVEKFPCY-----MRRDESVSFESTSV 863
+ + LRL ++ DA+D PK + +E LK + P + + R +EST
Sbjct: 899 LDPHCLRLAQLHSDAVDYPKSGNPVPLERIPRLKFKAKPDWNAPETLTRATPDFYESTRA 958
Query: 864 LGTIYNTVK 872
+G +Y ++
Sbjct: 959 IGRLYRRIE 967
>gi|17227102|gb|AAL38011.1|AF443073_1 putative RNA-dependent RNA polymerase [Phomopsis sp. CMW 5588]
Length = 1122
Score = 100 bits (248), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 156/686 (22%), Positives = 270/686 (39%), Gaps = 143/686 (20%)
Query: 230 ISTKGNCTFKGPYLNQTRTHLQRELGD--DNILLVKFDEELG-----GHRSSNNWNDSYS 282
+ T FK P + T + R+ D D L V+F +E+ + SN ++ Y
Sbjct: 176 VITPTTIYFKTPCVELT-NRILRKYSDLNDRFLRVQFTDEITFGKIFSSQDSNKDDNLYI 234
Query: 283 KYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYIL 342
+ + + + GI +G R Y F F S S + E+ AF ++
Sbjct: 235 RVHRVMQNGISIGDRHYRFLAF------------SNSQFR------ENGAFFFCETDHV- 275
Query: 343 SGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDG 402
+ ++ E F H+R SV + +R+ + T ++ S NI +I+D + G
Sbjct: 276 TCDSIREWMGDFRHIR---SVGKFAARMGQCFTTTRQVN-GISIPNIRKIDD--IERQTG 329
Query: 403 NVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVAR 462
+ + TDG G IS F+ +
Sbjct: 330 DHTWN------FTDGVGKISN--------------------------------FFAKLIA 351
Query: 463 TESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFN 522
+E E P Q+R+ KG L++ +PP + +RPS K KA +N
Sbjct: 352 SERDLPETPSCFQMRI----GGGKGVLVVWPDVPPSEVHVRPSQEKFKA--------VYN 399
Query: 523 SLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKV-S 581
LE++KT T+ ++ +I +L GV F+ +L + L + ++ A ++
Sbjct: 400 VLEIIKTFAFSHATF-NKQVIPVLVALGVDNSVFVSMLDDELREYDEALADSMKAGELLR 458
Query: 582 FNYGGMDYDFTSARMILSGISLDEPYLQHRLSI----LMKEEKKSLQAGKLPVTESYYLM 637
T A M+ + + EP+L L + ++K K + V +S +
Sbjct: 459 SQVDENQTTLTMAEMVDTFMDSKEPFLWTLLRLWKCWILKRLKHKF---AISVKKSAMVF 515
Query: 638 GTVDPTGILKSN--------------------EVCIILKDGQ--VSWEKV----LVYRNP 671
G VD G+L+ + +V I DG+ ++E + +V RNP
Sbjct: 516 GVVDEIGVLRGHSQATEGRGYNSIESLPQIFLQVPIEGSDGRSTTNYEVITGICVVGRNP 575
Query: 672 GLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPE 731
LH GD+ V++A V EL K + FP G R + +GGD DGD YFV +
Sbjct: 576 SLHPGDVRVVEAVDVPELRHL----KNVVVFPKTGDRDIPSMCSGGDMDGDDYFVYWDER 631
Query: 732 LLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQA 791
L+ W N A +D + ++ + F A+ + D
Sbjct: 632 LI-----PTEWDHPPLNHDAGSSTLDKPADVTIEDVTRFF---------AQYMKNDS--- 674
Query: 792 VMDRFLTLGDESAEEKAAMKEN--MLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCY 849
+ R T A++ + +N + L ++ A+D KSG + L+ K+P +
Sbjct: 675 -LGRIATAHFAQADQLSGGVKNPKCIELAKLHSMAVDY-IKSGRPAVMKRHLQPRKWPHW 732
Query: 850 MRRDESVSFESTSVLGTIYNTVKSYE 875
M +++ ++ S S LG IY+ +K E
Sbjct: 733 MEKEKKSNYRSYSALGKIYDRIKIEE 758
>gi|409080815|gb|EKM81175.1| hypothetical protein AGABI1DRAFT_56593 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1176
Score = 100 bits (248), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 160/667 (23%), Positives = 267/667 (40%), Gaps = 134/667 (20%)
Query: 219 DSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQR--ELGDDNILLVKFDEELGGH----R 272
D +H + T GP+ ++ ++R + +DN L V+F EE G R
Sbjct: 393 DEALCQTFHAMV-TPTTILLTGPFPERSNRVIRRYGKRNEDNFLRVEFREEDGLQYRLDR 451
Query: 273 SSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSA 332
N + + I +E I++ R + F + E +F R
Sbjct: 452 DVNGRASLRHRISPILKEKIVIAGRSFDFLAYSQSALREHS---------VWFCR----P 498
Query: 333 FIDMGYQYILSGKTVHEARY---MFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINI 389
F+D + + + + + + ++ A Y +RLS + T E R+
Sbjct: 499 FVDSDLGEVDAARIIQDLGTFDNLSYDKELINCPARYAARLSQAFTAT---EAATFRV-- 553
Query: 390 ERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSID 449
+EP KD + + + I TDG G +SED A + ++ +
Sbjct: 554 ----EEPQIRKD---IKTNDKQYIFTDGCGCMSEDFAREIWQTMHPKG------------ 594
Query: 450 RKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLP-PQTIQIRPSMIK 508
++ E +F P Q+R Y G+ KG L ++ KL +T +RPSMIK
Sbjct: 595 -RDSEEDF-------------PRAYQIR--YAGS--KGMLSVDYKLKGSRTFVVRPSMIK 636
Query: 509 VKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDAR 568
D +E+V+ P Y +R LI LL GV D+L++ D A
Sbjct: 637 F-------DAPEAKEIEIVRGIKNPTPYYFNRPLIMLLEGLGVN----YDVLQHFQDKAV 685
Query: 569 GVFSNKRNALKVSFNY---GGMDYDFTSARMILSGISLDEPYLQ------HRLSILMKEE 619
+ AL+ + + G+ F + + I L LQ L + +
Sbjct: 686 AKTQDATLALQDAIDLLENHGLGSSFRRPSTMQNIIQLGIDALQSDAFYGRLLRVAVYHA 745
Query: 620 KKSLQA-GKLPVTESYYLMGTVDPTGILKSNEV--CIILKDGQVSWEK--VLVYRNPGLH 674
+ L+ ++P+ +++ L+G D L NE+ CI DG++ + + VLV R+P +H
Sbjct: 746 LRDLKNNARIPIPDAWTLVGVADEHNFLGKNEIFACIKKSDGEMIYLEGHVLVSRSPCIH 805
Query: 675 FGDIHVLKAT------YVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMY---- 724
GD+ V+ A E+E T + F G R + + GGD DGD+Y
Sbjct: 806 PGDVQVVSAIGRPPKGSCFEVESLQNT----VVFSTKGNRPIPSCLGGGDLDGDIYNLLP 861
Query: 725 -FVSRNPELLKHFKESERWMSTSKNL---SANKRLIDFSLEELESELFKLFLNTRFCPSN 780
V ++ L++FK + K L S K + DF +E + S++ L
Sbjct: 862 LAVHKSLTPLRYFKPGKYTSGERKCLDKPSTMKDVADFVMEYIISDVIGL---------- 911
Query: 781 AKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPED 840
V +R+L + D+S + LRL ++ DA+D P K+G V V E
Sbjct: 912 -----------VANRWLVIADQS--QFGIQDRVCLRLAQLHSDAVDYP-KTGNPVSVAEI 957
Query: 841 LKVEKFP 847
K+ KFP
Sbjct: 958 PKL-KFP 963
>gi|224111420|ref|XP_002315849.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222864889|gb|EEF02020.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1102
Score = 99.8 bits (247), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 194/841 (23%), Positives = 317/841 (37%), Gaps = 179/841 (21%)
Query: 219 DSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGD-DNILLVKF-DEELGGHRSSN- 275
D G + I T F GP +N + L++ GD DN L V F DE+L S+N
Sbjct: 358 DDGLVFLRRVQI-TPTKLYFCGPDVNLSNRVLRKYPGDIDNFLRVSFVDEDLDKLFSANI 416
Query: 276 ----------NWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYF 325
+ Y + + R GI +G + + F F S S V+
Sbjct: 417 SPRTFSAIEGRQTNIYQRILSVQRNGITIGSKKFEFLGF------------SQSQVR--- 461
Query: 326 VRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFS 385
ESS ++ G T + R R + +VA Y +RL S + +
Sbjct: 462 ---ESSLWMFASR----PGLTAADIREWMGDFREIKNVAKYAARLGQSFSSSRE------ 508
Query: 386 RINIERIEDEPCRD---KDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDD 442
NI+R E E D K G V Y + +DG G IS +LA
Sbjct: 509 SFNIDRHEIEIIPDIEVKSGGVNY------VFSDGIGKISAELA---------------- 546
Query: 443 STERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQI 502
SI RK +F+ P Q+R Y G KG + ++ + +
Sbjct: 547 ---DSIARKLRLRSFT------------PSAFQIR--YGG--YKGVVAVDPT-SSMKLSL 586
Query: 503 RPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRN 562
R SM K K+ T SL+++ S R +L+R +I LLS GV + F +
Sbjct: 587 RRSMSKYKS--------TNTSLDILDWSKY-RACFLNREVIILLSTLGVKDQVFERKQKE 637
Query: 563 ALDDARGVFSNKRNALK-VSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKK 621
A+ + ++ A + + GG + + + EP+L L +
Sbjct: 638 AIAQLDAILTDPIKAQEALELMAGGENARVLNGMLACGYKPGAEPFLAMMLETFRALKLL 697
Query: 622 SLQA-GKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWE----------------- 663
L+ ++ V + G +D T L+ + + ++S
Sbjct: 698 DLRTKSRIFVPNGRAMTGCLDETRTLEYGQAFVQYSRARLSKSHDHFKGGKTDQHTLIVR 757
Query: 664 -KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGD 722
K++V +NP LH GD+ +LKA V L V I FP G R +E +G D DGD
Sbjct: 758 GKIVVAKNPCLHPGDVQILKAVDVPALHHMVD----CIVFPQKGKRPHTNECSGSDLDGD 813
Query: 723 MYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAK 782
+YFV + +L+ K + + + D ++EE++ LN
Sbjct: 814 VYFVCWDTDLIPPQKFPPMDYTAPQTTILDH---DVTIEEVQEYFADYLLN--------D 862
Query: 783 SLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLK 842
SL C V+ D +E A E + L + A+D P K+G+ ++P++L+
Sbjct: 863 SLGIICTAHVV-----FAD--SEPDMARSEKCIELAQLSSIAVDFP-KTGVPAKIPKELR 914
Query: 843 VEKFPCYMRRD--ESVSFESTSVLGTIYNTVK------------SYEAVDRSVTEIWKLP 888
V+++P +M + + ++ S VLG ++ V+ + EA RS ++
Sbjct: 915 VKEYPDFMEKAAYKHTTYVSQRVLGKLFRAVRDIAPDTSPVRPFTKEAAKRSYDPDMEVD 974
Query: 889 CFDDGVPEACMTKWKGYYDQYRWEM---------KEAIDKCTVERE---------EAAEL 930
F D + EA +K YD M E I C + E
Sbjct: 975 GFKDYINEAFY--YKSEYDNKLGNMMDYYGIKTEAEIIGGCIMRMGRSFDKKKDLEGINF 1032
Query: 931 VIEKYKQILYGAAEFEQSTRTLEEIYNEALAIYNITYD------LAASRRQVSYCSFAWR 984
+ ++ S + +++Y +A A Y++TY +V + SF W
Sbjct: 1033 SVSSLRKQARAWFNESGSKESPDDVYRKASAWYHVTYHPRFWGLYNEGMDRVHFLSFPWC 1092
Query: 985 V 985
V
Sbjct: 1093 V 1093
>gi|255548928|ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
Length = 1203
Score = 99.8 bits (247), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 125/483 (25%), Positives = 204/483 (42%), Gaps = 89/483 (18%)
Query: 413 IHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPL 472
I +DG G I+ DLA + ++ +LE N PP
Sbjct: 585 IFSDGIGMITPDLA------------------KEVAEKLKLEVN-------------PPC 613
Query: 473 LMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVK-TSN 531
Q+R Y G KG + P IR S+ +V ++ S+ T LE+ T
Sbjct: 614 AYQIR--YAG--CKGVVAC---WPAHIDGIRLSL-RVSMNKFHSNHTT---LEICSWTRF 662
Query: 532 QPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDF 591
QP +L+R +I LLS VP+ F + + +F + A V +
Sbjct: 663 QP--GFLNRQIITLLSTLDVPDEIFWKMQIVMVSKLNQMFMDADVAFDV-VTASCAEQGN 719
Query: 592 TSARMILSGISLD-EPYLQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKSN 649
T+A M+ +G + EP+L L+ + + L + ++ V +LMG +D G+L+
Sbjct: 720 TAAIMLSAGFNPKTEPHLCGMLTCIRAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEHG 779
Query: 650 EVCI----------ILKDG----------QVSWEKVLVYRNPGLHFGDIHVLKATYVKEL 689
+ I K G QV V+V +NP LH GDI +L+A EL
Sbjct: 780 QCFIQVSNPSLESCFWKHGSRFSESKKKLQVVKGTVVVAKNPCLHPGDIRILEAVDAPEL 839
Query: 690 EDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNL 749
+ FP G R +E +G D DGD+YFV+ + L+ K S W+ +
Sbjct: 840 HHL----HDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRS--WLPMQYDA 893
Query: 750 SANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAA 809
+ K+L + ++ F AK++ + A+ + + D S E A
Sbjct: 894 AEAKQL---NRPVNHQDIIDFF---------AKNMVNENLGAICNAHVVHADLS--EYGA 939
Query: 810 MKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYN 869
+ EN ++L + A+D P K+G V +P LK + +P +M +++ S+ S +LG +Y
Sbjct: 940 LDENCIKLAELAATAVDFP-KTGKLVTMPPHLKPKLYPDFMGKEDYQSYNSNKILGRLYR 998
Query: 870 TVK 872
VK
Sbjct: 999 QVK 1001
>gi|260801457|ref|XP_002595612.1| hypothetical protein BRAFLDRAFT_64722 [Branchiostoma floridae]
gi|229280859|gb|EEN51624.1| hypothetical protein BRAFLDRAFT_64722 [Branchiostoma floridae]
Length = 1207
Score = 99.8 bits (247), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 107/401 (26%), Positives = 183/401 (45%), Gaps = 63/401 (15%)
Query: 498 QTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFL 557
+ +Q R SM K + D+ +E+ TS+ P + +L+R +I +LS GVP+I F
Sbjct: 467 EIMQYRSSMNKFWSLHDV--------IEICTTSH-PGRLFLNRQVITILSQLGVPDIVFQ 517
Query: 558 DILRNALDDARGVF---SNKRNALKVSFNYGGMDYDFTSARMILSGISLD-EPYLQHRLS 613
+ + L + +F ++ AL G+ Y R++ G+ L EP+ + L
Sbjct: 518 QLQQERLFELADMFLLETSAAEALCQRAQMKGLPY----RRLLKMGVQLTTEPFFRSMLQ 573
Query: 614 ILMK----EEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVC------IILKDGQVSWE 663
+ K E ++ + G +P ++G +D TG L+ +V I +DG+V
Sbjct: 574 KIYKSSVGEIRRRARIG-IPPEYGRIMLGVLDETGTLEYGQVFVQYTEDIANQDGKVRVL 632
Query: 664 K--VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDG 721
+ V+V R P LH GD+ L+A V L V I FP GPR +E+ GGD DG
Sbjct: 633 EGDVVVTRTPCLHPGDVRKLQAIDVPALYHMVD----VIVFPAKGPRPHPNEMTGGDLDG 688
Query: 722 DMYFVSRNPELLKHFKESE--RWMSTSKNLSAN---KRLIDFSLEELESELFKLFLNTRF 776
D +FV+ P+L+ + + + S +K N K LIDF ++ ++++ L
Sbjct: 689 DDFFVTWLPDLIFNGPNEQPMHFRSPTKREVPNVTIKHLIDFIVDYIKNDRLGLI----- 743
Query: 777 CPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVE 836
+NA + AD E + RL + DA+D P K+G+ +
Sbjct: 744 --ANAHLVFAD----------------TEPMGIFSDVCQRLAVKHSDAVDFP-KTGVCPD 784
Query: 837 VPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAV 877
+ + + ++P +M + + + S VLG +Y + E V
Sbjct: 785 LDKTERPLEYPDFMGKRDKTTRRSERVLGKMYRECQMIENV 825
>gi|51989474|gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nicotiana benthamiana]
Length = 1120
Score = 99.8 bits (247), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 150/615 (24%), Positives = 255/615 (41%), Gaps = 125/615 (20%)
Query: 281 YSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQY 340
Y + I R+G+++G + + F F S S ++ V M +S
Sbjct: 446 YHRILSILRDGLVIGSKRFLFLAF------------SASQLRSNSVWMFAS-------NE 486
Query: 341 ILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDK 400
+ + + E F +R+VS A M +L +TM+++ I + IE
Sbjct: 487 HVKAEDIREWMGCFNKIRSVSKCAARMGQLFSTSFQTMEVQSPHVEI-LPDIE------- 538
Query: 401 DGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDV 460
V DG + +DG G IS+ A + +KC
Sbjct: 539 ----VTSDGVSYCFSDGIGKISQAFASQVA-----QKCG--------------------- 568
Query: 461 ARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQT 520
P Q+R Y G KG + +++ + + +R SM+K ++ +
Sbjct: 569 ------LSYTPSAFQIR--YGG--YKGVIAVDRN-SFRKLSLRGSMLKFESKNRM----- 612
Query: 521 FNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKV 580
L + K S+ YL+R ++ LLS GV + F D+L N L + + AL V
Sbjct: 613 ---LNITKWSD-AMPCYLNREIVILLSTLGVEDKVFEDLLDNHLHLLGKMLTTNEAALDV 668
Query: 581 SFNYGGMDYDFTSARMILSGISLD-EPYLQHRLSILMKEEKKSLQA-GKLPVTESYYLMG 638
+ GG D RM+ G + + EPYL L + + L++ ++ + + L+G
Sbjct: 669 LESIGGGDVKKILMRMLHQGYAPNLEPYLSMMLQSHFENQLSDLRSRCRIFIHKGRVLVG 728
Query: 639 TVDPTGILKSNEVCII-------LKDGQVSWEK------------VLVYRNPGLHFGDIH 679
+D TGIL +V L+ Q S+ + V+V +NP LH GD+
Sbjct: 729 CLDETGILNYGQVYARITMTKAELQSAQQSFFQKVDETTAVVRGNVVVTKNPCLHPGDVR 788
Query: 680 VLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKES 739
VL+A Y LE+ I FP G R +E +GGD DGD+YF+S + L+
Sbjct: 789 VLEAVYEVALEEKAWVD--CIIFPQKGERPHPNECSGGDLDGDLYFISWDENLIP----- 841
Query: 740 ERWMSTSKNLSANK-RLID--FSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRF 796
R T + + + R++D +L+E++ + F++ + +D A+
Sbjct: 842 -RQTVTPMDYTGRRTRIMDHEVTLQEIQ----RFFVDY---------MISDTLGAISTAH 887
Query: 797 LTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESV 856
L D E A+ L+L ++ A+D K+G E+P LK +FP ++ R +
Sbjct: 888 LVHADR--EPDKALNPKCLQLATLHSMAVDFA-KTGAAAEMPRFLKPREFPDFLERWDKP 944
Query: 857 SFESTSVLGTIYNTV 871
+ S VLG +Y +
Sbjct: 945 MYISEGVLGKLYRAI 959
>gi|358393612|gb|EHK43013.1| hypothetical protein TRIATDRAFT_225118 [Trichoderma atroviride IMI
206040]
Length = 1272
Score = 99.8 bits (247), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 154/653 (23%), Positives = 265/653 (40%), Gaps = 145/653 (22%)
Query: 255 GDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIAR---EGILVGLRCYHFFVFKDGGKEE 311
D L V+F +E R + N ++ + ++ R EGI +G R Y F F G +
Sbjct: 476 AQDRFLRVQFVDEAESGRMTMNSHNKEEIWKKLLRTLYEGIQIGDRRYEFLAF---GSSQ 532
Query: 312 KKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLS 371
+ +S A+ +I + + R V + VA Y +RL
Sbjct: 533 LR---------------QSGAYFFCPTDHI----SCQDIRQWMGQVSHIRIVAKYAARLG 573
Query: 372 LILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPT 431
S T +++ + + P D + N TDG G IS +A
Sbjct: 574 QCFSTTREMK------GVPIPDVRPIADIERN-------GYCFTDGVGMISGFMARMI-- 618
Query: 432 YVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLL 491
++ LE F+D P Q R+ KG L++
Sbjct: 619 ----------------VEELTLEV-FND-----------PSAFQFRM----GGCKGVLVV 646
Query: 492 NKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGV 551
+ + IR S K KAD +LE++K + T L+R I +L + GV
Sbjct: 647 WPQAKKSEVYIRESQEKFKADA--------KNLEIIKCAKYTSAT-LNRQTITILEHLGV 697
Query: 552 PEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTS---ARMILSGI---SLDE 605
P+ F+DIL + + K N + V +D + ++ A ++ +G + E
Sbjct: 698 PKKAFMDILEKQISLYEE--AAKDNRVAVGMLKKCVDENQSTLVLAELLQAGFKTKNCQE 755
Query: 606 PYLQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKSN--------------- 649
P++ + L++ K L + ++ + +S +++G VD TG L+ +
Sbjct: 756 PFVVNLLNLWRSWSLKLLKEKARIAIEQSAFVLGCVDETGTLRGHSNATEGTSDKDVNKL 815
Query: 650 -EVCIILKDGQV-SWEKVL-----VYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFF 702
++ + + D ++ KV+ V RNP LH GDI V++A + EL K + F
Sbjct: 816 PQIFLQVSDSKIYDTTKVIKGICVVGRNPSLHPGDIRVVEAVDIPELHHL----KDVVVF 871
Query: 703 PCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSA---NKRLIDFS 759
P G R + + ++GGD DGD +FV P L+ E+W + N S+ K D +
Sbjct: 872 PSTGDRPVPNMLSGGDLDGDDFFVIWEPSLI-----PEKWNHPAMNYSSPPPPKLDRDVN 926
Query: 760 LEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLIN 819
+ +L F+N + ++ L A A+ DRF D ++ LRL
Sbjct: 927 VNDLRD----FFVN--YMKNDVLPLIATAHLALADRF----DPAS-------PICLRLAE 969
Query: 820 IYYDALDAPKKSGIKVEVPEDL-KVEKFPCYMRRDESVSFESTSVLGTIYNTV 871
++ A+D P K+G E D+ + +P +M + + ++S LG IY+ V
Sbjct: 970 LHSKAVDYP-KTGDPAEFNHDMYNPQSWPHFMEKQQ--RYKSARALGAIYDRV 1019
>gi|406868525|gb|EKD21562.1| RNA-dependent RNA polymerase 1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1494
Score = 99.4 bits (246), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 158/699 (22%), Positives = 260/699 (37%), Gaps = 143/699 (20%)
Query: 220 SGKTHMYH-CHISTKGNCT-----FKGPYL---NQTRTHLQRELGDDNILLVKFDEELGG 270
+ KT + H C S K T F P + N+ H RE D L V+F +EL
Sbjct: 469 TAKTEIPHYCAYSRKATITPSTMYFSSPTVETTNRVLRHYARENRDGRFLRVQFTDELAE 528
Query: 271 HRSS----NNWNDS-YSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYF 325
R + N ND +++ GI +G R Y F F + E +F
Sbjct: 529 GRINACVDNQKNDELFTRIYRTLFNGIQIGDRHYEFLAFGNSQFRENGA--------YFF 580
Query: 326 VRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFS 385
E + D+ R H + VA Y +RL S T + S
Sbjct: 581 CPTEHLSCDDI--------------RGWMGHFSDIKVVAKYAARLGQCFSTTRAIN-GLS 625
Query: 386 RINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTE 445
+ +I +I D ++ + DG I IS +L L+ T
Sbjct: 626 KPDIVKIADV----ENNGYTFTDGVGKISPFLAQMISAELGLRTNTA------------- 668
Query: 446 RSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPS 505
P Q RL KG L++ + + IR S
Sbjct: 669 -------------------------PSAFQFRL----GGCKGVLVVWPDAKEKEVHIRMS 699
Query: 506 MIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALD 565
K A +N LE+++ + T L+R I +LS GVP+ FL +L L
Sbjct: 700 QQKFTA--------VYNGLEIIRCARFSCAT-LNRQTITILSALGVPDEVFLKMLSEQLA 750
Query: 566 DARGVFSNKRNALKVSFNY-GGMDYDFTSARMILSG-ISLDEPYLQHRLSILMKEEKKSL 623
+ + N A+ + Y A MI +G ++ +P++ L + K L
Sbjct: 751 NYQTAMDNDDAAVSLLLRYIDDNQMTINIATMIRNGFMAEKDPFVLSLLHLWRSWSIKLL 810
Query: 624 -QAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEKV----------------- 665
+ K+ + +++G VD T L+ + QV+ E++
Sbjct: 811 KEKAKIIIENGAFVLGCVDETFTLRGYTISTAPHGEQVAEEELPQIFLQVPDKSDPNRYN 870
Query: 666 ------LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDF 719
LV RNP LH GD+ V++A V L + + FP +G R + +GGD
Sbjct: 871 IITGICLVGRNPSLHPGDLRVVQAVDVPALHHL----RDVVVFPASGDRDVPSMCSGGDL 926
Query: 720 DGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPS 779
DGD +FV + L W N A K + ++ +L K F+ RF
Sbjct: 927 DGDDFFVIWDEAL-----RPREWNCQPMNYIAPKPKLHNQPVQI-VDLMKFFV--RF--- 975
Query: 780 NAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPE 839
+ D A+ L D A + + + L +++ A+D K+G ++P+
Sbjct: 976 ----MKNDSLPAIAHAHLAQSD--ALQMSVKDPKCIELASLHSKAVDY-VKTGEAAQMPK 1028
Query: 840 DLKVEKFPCYM---RRDESVSFESTSVLGTIYNTVKSYE 875
L+ K+P +M + ++ + S +LG +Y+ V++ +
Sbjct: 1029 HLRPRKWPHFMEKKHKPKTAQYHSNEILGQLYDKVETVD 1067
>gi|357466249|ref|XP_003603409.1| Rna-dependent RNA polymerase [Medicago truncatula]
gi|355492457|gb|AES73660.1| Rna-dependent RNA polymerase [Medicago truncatula]
Length = 1188
Score = 99.4 bits (246), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 106/411 (25%), Positives = 180/411 (43%), Gaps = 70/411 (17%)
Query: 500 IQIRPSMIKVKADRDLSDGQTFNSLEVVK-TSNQPRKTYLSRNLIALLSYGGVPEIFFLD 558
+ +RPSM K ++ T +LE+ T QP +L+R +I LLS VP+ F
Sbjct: 624 LSLRPSMNKFQS--------THTTLEICAWTRFQP--GFLNRQIITLLSALDVPDEIFWK 673
Query: 559 ILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLD-EPYLQHRLSILMK 617
+ + + ++ A V ++ +A M+ G S EP+L+ L+ +
Sbjct: 674 MQEGMISSLNQMLVDRDVAYDV-LTKSCAEHGNAAAIMLSCGFSPKTEPHLRGMLNSIRA 732
Query: 618 EEKKSL-QAGKLPVTESYYLMGTVDPTGILK-----------SNEVCIILKDGQVSWEK- 664
+ L + ++ V+ +LMG +D G+L+ S E C + S K
Sbjct: 733 AQLWGLREKSRIFVSSGRWLMGVLDELGVLEQGQCFVQVSTPSLENCFSKHGSRFSETKT 792
Query: 665 -------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGG 717
V++ +NP LH GD+ VL+A V +L + FP G R DE +G
Sbjct: 793 VHVVKGIVVIAKNPCLHPGDVRVLEAVDVPDLHHLYD----CVVFPQKGERPHTDEASGS 848
Query: 718 DFDGDMYFVSRNPELLKHFKESERWMSTSKNLS-------ANKRLIDFSLEELESELFKL 770
D DGD+YFV+ + L+ K S M + S + +IDF + + +E
Sbjct: 849 DLDGDLYFVTWDGNLIPPSKRSWPPMEYAAQESRLQTRQVTVQDIIDFFVRNMVNEQL-- 906
Query: 771 FLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKK 830
C NA + AD + + A+ EN + L + A+D P K
Sbjct: 907 ---GSIC--NAHVVHAD----------------SSDYGALDENCVHLAELAATAVDFP-K 944
Query: 831 SGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSV 881
+G V +P +LK + +P +M ++ S++S +LG +Y +K +A D+ +
Sbjct: 945 TGKLVTMPSNLKPKLYPDFMGKEHHQSYKSKKILGRLYRRIK--DAYDKDI 993
>gi|4138343|emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]
Length = 775
Score = 99.4 bits (246), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 153/680 (22%), Positives = 269/680 (39%), Gaps = 138/680 (20%)
Query: 238 FKGPYLNQTRTHLQRELGD-DNILLVKF-DEELGG-------HRSSNNW--NDSYSKYNE 286
F GP +N + L+ D DN L V F DEE R++ N D Y +
Sbjct: 63 FLGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKIFSMDLLPRANRNGIRTDIYERILS 122
Query: 287 IAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKT 346
+ G+++G + + F F S+S ++ V M +S G T
Sbjct: 123 TLQNGLVIGAKKFEFLAF------------SSSQLRDNSVWMFASR----------PGLT 160
Query: 347 VHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVY 406
++ R + + +VA Y +RL + + + R I+ I D V
Sbjct: 161 AYDIRTWMGDFQQIRNVAKYAARLGQSFGSSRE-TLSVGRHEIKYIPD----------VE 209
Query: 407 KDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESH 466
G + +DG G IS D A + +KC +
Sbjct: 210 VHGTNYVFSDGIGKISADFAHRV-----AKKCGLQHT----------------------- 241
Query: 467 YGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEV 526
P Q+R Y G KG + ++ P + +R SM+K +++ L+V
Sbjct: 242 ----PSAFQIR--YGG--YKGVVAVDP-YSPMKLSLRKSMLKYESNN--------TKLDV 284
Query: 527 VKTSN-QPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALK-VSFNY 584
+ S QP YL+R L+ L+S GV + F A+ + + A + +
Sbjct: 285 LGWSKYQP--CYLNRQLVTLMSTLGVKDEVFKRKQNEAVAQLDAILHDSLKAQEALDLMS 342
Query: 585 GGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQA-GKLPVTESYYLMGTVDPT 643
G + + + + EP+L L + L+ ++ + + +MG +D +
Sbjct: 343 PGENTNILKEMLNCGYLPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPKGRSMMGCLDES 402
Query: 644 GILKSNEVCIILKD--GQVSWEK-------------------VLVYRNPGLHFGDIHVLK 682
L+ +V + G+ +E+ V+V +NP LH GDI VLK
Sbjct: 403 RTLEYGQVFVQFTGAGGRQFYEESHHFNDSGSANYNFILKGNVVVAKNPCLHPGDIRVLK 462
Query: 683 ATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERW 742
A V L V + FP G R +E +G D DGD+YFV +P+L+ +
Sbjct: 463 AVDVPALHHMVD----CVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLIPPRQVQPMD 518
Query: 743 MSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDE 802
+ + ++ + D ++EE+E E F T + ++ + A+ DR
Sbjct: 519 YTPAPSIQLDH---DVTIEEVE-EYF-----TNYMVNDGLGVIANAHVVFADR------- 562
Query: 803 SAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTS 862
E AM + + L ++ A+D PK +G+ E+P L+ +++P +M + + ++ S
Sbjct: 563 --EPNMAMSDPCIELAQLFSIAVDFPK-TGVPAEIPSQLRPKEYPDFMEKPDKTTYHSEK 619
Query: 863 VLGTIYNTVKSYEAVDRSVT 882
V+G ++ VK S+T
Sbjct: 620 VIGKLFREVKDKTTQASSIT 639
>gi|449441914|ref|XP_004138727.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
gi|316989907|gb|ADU77019.1| RNA-dependent RNA polymerase 6 [Cucumis sativus]
Length = 1197
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 108/439 (24%), Positives = 194/439 (44%), Gaps = 60/439 (13%)
Query: 468 GEPPLLMQVRLFYNGTAVKGTL-LLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEV 526
G PP Q+R Y G KG + K + +RPSM K +++ + LE+
Sbjct: 608 GSPPCAYQIR--YAG--YKGVVATWPSKKDGIRLALRPSMNKFESNHRI--------LEI 655
Query: 527 VK-TSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYG 585
T QP +L+R +I LLS VP+ F + + + ++ A +V
Sbjct: 656 CSWTRFQP--GFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEV-LTAS 712
Query: 586 GMDYDFTSARMILSGIS-LDEPYLQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPT 643
+ +A M+ +G EP+L+ L + + L + ++ VTE + MG D +
Sbjct: 713 CAEQGNAAAIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDES 772
Query: 644 GILKSNEVCIIL----------KDGQVSWEK----------VLVYRNPGLHFGDIHVLKA 683
G+L+ + I + K G + E V++ +NP LH GD+ +L+A
Sbjct: 773 GVLQEGQCFIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEA 832
Query: 684 TYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWM 743
EL + FP NG R +E +G D DGD+YF + + L+ K+S M
Sbjct: 833 VDAPELHHLYD----CLVFPRNGERPHTNEASGSDLDGDLYFTTWDGNLIPPSKKSWPPM 888
Query: 744 STSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDES 803
+ ++ L+ ++ + + F AK++ + + + + D S
Sbjct: 889 EYAPA----------EVKTLQRKITRWDIMEFF----AKNMINESLGTICNAHVVHADRS 934
Query: 804 AEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSV 863
+ A+ EN ++L + A+D P K+G V +P LK + +P +M ++ + S++ST +
Sbjct: 935 --KHGALDENCIQLSELAATAVDFP-KTGKLVTMPPHLKPKLYPDFMGKEATQSYKSTKI 991
Query: 864 LGTIYNTVKSYEAVDRSVT 882
LG +Y ++ D +T
Sbjct: 992 LGKMYRRIRDAYDDDDMIT 1010
>gi|449499234|ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
Length = 1197
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 108/439 (24%), Positives = 194/439 (44%), Gaps = 60/439 (13%)
Query: 468 GEPPLLMQVRLFYNGTAVKGTL-LLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEV 526
G PP Q+R Y G KG + K + +RPSM K +++ + LE+
Sbjct: 608 GSPPCAYQIR--YAG--YKGVVATWPSKKDGIRLALRPSMNKFESNHRI--------LEI 655
Query: 527 VK-TSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYG 585
T QP +L+R +I LLS VP+ F + + + ++ A +V
Sbjct: 656 CSWTRFQP--GFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEV-LTAS 712
Query: 586 GMDYDFTSARMILSGIS-LDEPYLQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPT 643
+ +A M+ +G EP+L+ L + + L + ++ VTE + MG D +
Sbjct: 713 CAEQGNAAAIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDES 772
Query: 644 GILKSNEVCIIL----------KDGQVSWEK----------VLVYRNPGLHFGDIHVLKA 683
G+L+ + I + K G + E V++ +NP LH GD+ +L+A
Sbjct: 773 GVLQEGQCFIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEA 832
Query: 684 TYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWM 743
EL + FP NG R +E +G D DGD+YF + + L+ K+S M
Sbjct: 833 VDAPELHHLYD----CLVFPRNGERPHTNEASGSDLDGDLYFTTWDGNLIPPSKKSWPPM 888
Query: 744 STSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDES 803
+ ++ L+ ++ + + F AK++ + + + + D S
Sbjct: 889 EYAPA----------EVKTLQRKITRWDIMEFF----AKNMINESLGTICNAHVVHADRS 934
Query: 804 AEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSV 863
+ A+ EN ++L + A+D P K+G V +P LK + +P +M ++ + S++ST +
Sbjct: 935 --KHGALDENCIQLSELAATAVDFP-KTGKLVTMPPHLKPKLYPDFMGKEATQSYKSTKI 991
Query: 864 LGTIYNTVKSYEAVDRSVT 882
LG +Y ++ D +T
Sbjct: 992 LGKMYRRIRDAYDDDDMIT 1010
>gi|320586448|gb|EFW99118.1| RNA-directed RNA polymerase [Grosmannia clavigera kw1407]
Length = 2177
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 160/716 (22%), Positives = 263/716 (36%), Gaps = 186/716 (25%)
Query: 230 ISTKGNCTFKGPYL---NQTRTHLQRELGDDNILLVKFDEEL-----GGHRSSNNWNDSY 281
I T F P L N+ H + D L V+F +EL G + ++ +
Sbjct: 1105 IVTPTTIVFSTPALEAGNRVLRHYREH--HDRFLRVQFTDELHIGRLSGGPDTTRTDECF 1162
Query: 282 SKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYI 341
++ + GI VG R + F F G + + E+ A+ + +
Sbjct: 1163 TRAFRALKNGIRVGGRHFKFLAF---GNSQLR---------------ENGAYFFAPTELV 1204
Query: 342 LSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKD 401
T + R + +VA Y +RL LS T + ++ I D
Sbjct: 1205 ----TCQDVRDWMGDFSNIKTVAKYAARLGQCLSTTRPVPTFGVPTTVQHIPD------- 1253
Query: 402 GNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVA 461
+G TDG G IS+ ++ V
Sbjct: 1254 -----VEGGGFCFTDGVGKISK--------------------------------WWARVI 1276
Query: 462 RTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPP-QTIQIRPSMIKVKADRDLSDGQT 520
+ E P Q R+ KG L++ +P Q +Q+RPS K
Sbjct: 1277 ASHLRVSEVPSAFQFRM----GGCKGVLVVWPDVPSGQVVQVRPSQEK------FPTSDK 1326
Query: 521 FNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKV 580
N LE+V+ S T L++ I LL+ G+P FL++L L V + R A+
Sbjct: 1327 ANVLEIVRCSETATAT-LNQQTILLLTCLGIPTSVFLELLNEELTGIDAVMKDARKAVDQ 1385
Query: 581 SFNYGGMDYDFTS---ARMILSG-ISLDEPYLQHRLSILMKEEKKSL-QAGKLPVTESYY 635
+D + T+ A M+ +G + DEP++ L + K+L + ++ V S +
Sbjct: 1386 LMVR--VDQNHTTHALADMVKAGFMDSDEPFVWALLQLWRSWTLKALKEKARITVERSAF 1443
Query: 636 LMGTVDPTGILKSN---------------------------EVCIILKD------GQVSW 662
++G VD T L+ + ++ + + D GQV
Sbjct: 1444 VLGCVDETDTLRGHTNEPERPTNEDTRDKIDDKENKIARLPQIFLQVPDLDAVTAGQVRS 1503
Query: 663 E----------KV-----LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGP 707
KV LV RNP LH GD+ V++A V L + + FP G
Sbjct: 1504 SIDQDAGHGKYKVIVGLCLVGRNPSLHPGDLRVVEAVDVPALHHL----RDVVVFPRVGD 1559
Query: 708 RSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSAN----------KRLID 757
R + +GGD DGD YFV + LL + W + N A+ + LI
Sbjct: 1560 RDIPGMCSGGDLDGDDYFVFWDKRLLPPHRV---WNYEAMNYEASREPDVDRVTLRHLIS 1616
Query: 758 FSLEELESE-LFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLR 816
F ++ ++ + L ++ L+ R G + AM L
Sbjct: 1617 FFVQHMKHDTLPRIALSHR------------------------GFADQLDGGAMHPRCLE 1652
Query: 817 LINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVK 872
L ++ A+D K+GI +P L +++P +M R + ++ S + LG IY+ VK
Sbjct: 1653 LAQLHSQAVDY-AKTGIPALLPHRLNPKQWPHWMNRIQKHTYRSPTALGKIYDRVK 1707
>gi|121704872|ref|XP_001270699.1| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus clavatus
NRRL 1]
gi|119398845|gb|EAW09273.1| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus clavatus
NRRL 1]
Length = 1428
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 155/662 (23%), Positives = 253/662 (38%), Gaps = 147/662 (22%)
Query: 257 DNILLVKF-DEELGGHRSS---NNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEK 312
D L V+F DE+L G +S + ++ +++ GI+VG R Y F F +
Sbjct: 528 DRFLRVRFTDEKLFGRINSTMDDTMDEVFTRIKRALANGIVVGDRRYEFLAFGN------ 581
Query: 313 KKDPSTSPVKCYFVRMESSAFIDMGYQYI--LSGKTVHEARYMFMHVRTVSSVANYMSRL 370
S F + G + L T R + +VA + +RL
Sbjct: 582 ------------------SQFREHGAYFFAPLPNLTAANIRAWMGTFNDIRNVAKHAARL 623
Query: 371 SLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCP 430
S T + + I +I+D V ++G +DG G IS LA
Sbjct: 624 GQCFSTTRA--ISGCPVQIHKIDD----------VVRNGYTF--SDGVGRISRFLA---- 665
Query: 431 TYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLL 490
+ ++ + ID EPP Q RL KG L
Sbjct: 666 -----QMVASELKIKTPID-------------------EPPSAFQFRL----GGCKGMLT 697
Query: 491 LNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGG 550
++ + + IR S K A N LE+++ S T L+R LI +LS G
Sbjct: 698 VSPEAQRHEVHIRKSQYKFAA--------AHNGLEIIRWSQFSMAT-LNRQLIIVLSSLG 748
Query: 551 VPEIFF---LDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGIS-LDEP 606
+P+ F L + +L++A S LK + M T ++M+L G EP
Sbjct: 749 IPDQVFHEKLQAMLRSLNEAMESDSQAIYWLKKYVDPNQMT--LTVSQMVLDGFRRTQEP 806
Query: 607 YLQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDG------- 658
++ L + K L + K+ + + L+G +D TGILK + KD
Sbjct: 807 FVTSVLRLWRAWHLKYLKEKAKIAIDKGANLLGCMDETGILKGYFENVPAKDAPREKKLT 866
Query: 659 -----------------QVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIF 701
Q+ ++ RNP LH GDI V++A V EL K +
Sbjct: 867 SLPEVFVQILHPESGKYQIIEGVCILARNPSLHPGDIRVVRAVNVPELSHL----KDVVV 922
Query: 702 FPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRL---IDF 758
FP G R + +GGD DGD Y V + +L+ + W +++K D
Sbjct: 923 FPQTGDRDVPSMCSGGDLDGDDYLVIWDQDLI-----PKDWFRIPMKYTSDKAQDLNQDV 977
Query: 759 SLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLI 818
+++ + S F +++ F P A + A W DR E + +RL
Sbjct: 978 TVDHITS-FFVIYMKNDFLPRIAHAHLA--W---ADRL---------EYGVNEGKCIRLA 1022
Query: 819 NIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVS---FESTSVLGTIYNTVKSYE 875
++ DA+D K+G + L+ + +P +M + + S +LG +Y+ V+ +
Sbjct: 1023 QLHSDAVDY-NKTGRPANMTRSLQPKMWPHFMEKKHKPKERIYRSGKILGQLYDAVERVD 1081
Query: 876 AV 877
V
Sbjct: 1082 FV 1083
>gi|295885030|gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
gi|295885034|gb|ADG57592.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
Length = 1196
Score = 98.6 bits (244), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 105/407 (25%), Positives = 182/407 (44%), Gaps = 57/407 (14%)
Query: 500 IQIRPSMIKVKADRDLSDGQTFNSLEVVK-TSNQPRKTYLSRNLIALLSYGGVPEIFFLD 558
+ +R SMIK + +LE+ T QP +L+R +I LLS GVP+ F
Sbjct: 637 LSLRSSMIKFFSHH--------TTLEICSWTRFQP--GFLNRQIITLLSTLGVPDEVFWG 686
Query: 559 ILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLD-EPYLQHRLSILMK 617
+ + + V + A +V + G + T A M+ +G EP+L+ L+ +
Sbjct: 687 MQNSMVSKLDKVLVDTDAAFEVVISSCG-EQGHTPAIMLSAGFKPQTEPHLRGMLTCVRA 745
Query: 618 EEKKSL-QAGKLPVTESYYLMGTVDPTGILKSNEVCI----------ILKDGQVSWEK-- 664
+ L + ++ + +LMG +D G+L+ + I LK G E
Sbjct: 746 SQLWGLREKSRIFIHSGRWLMGVLDELGVLEQGQCFIQVSNPSLQNCFLKHGSRFAETKK 805
Query: 665 --------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAG 716
V++ +NP LH GDI +L+A L + FP G R +E +G
Sbjct: 806 NFEVIKGLVVIAKNPCLHPGDIRILEAVDAPGLHHLYD----CLVFPQKGERPHTNEASG 861
Query: 717 GDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRF 776
D DGD+YFV+ L+ K+S + M +L A + L + ++ + F
Sbjct: 862 SDLDGDLYFVTWEEALIPPSKKSSQPMQY--DLDAPREL---NRSVTHKDIIEFF----- 911
Query: 777 CPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVE 836
+K++ + ++ + + D S E A E + L + A+D P K+G V
Sbjct: 912 ----SKNMVNEHLGSICNAHVVHSDLS--EHGASDEKCIHLAELAAIAVDFP-KTGKIVS 964
Query: 837 VPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSVTE 883
+P LK + +P +M ++E S++S +LG +Y +K +A D+ V+E
Sbjct: 965 MPAQLKPKLYPDFMGKEEFQSYKSNKILGRLYRYIK--DAYDKDVSE 1009
>gi|145547505|ref|XP_001459434.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74830373|emb|CAI39057.1| RNA-dependent RNA polymerase [Paramecium tetraurelia]
gi|124427259|emb|CAK92037.1| unnamed protein product [Paramecium tetraurelia]
Length = 1331
Score = 98.6 bits (244), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 125/427 (29%), Positives = 205/427 (48%), Gaps = 52/427 (12%)
Query: 474 MQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQP 533
+QVR Y+G KG LLLN LP TI++R SMIK ++DG + ++ + N+
Sbjct: 697 IQVR--YHGA--KGVLLLNDDLPDNTIELRKSMIKFNPTL-MNDG-NYKTMISLLDYNKF 750
Query: 534 RKTYLSRNLIALLSYGGVPEIFFLDILRNALD---DARGVFSNKRNALKVSFN--YGGMD 588
R YL+R +I LL G+ E F+ + R L + V S+ N V +N G+
Sbjct: 751 RGGYLNRQIIILLVTLGIQEEVFMQLQREYLHKIANLSAVDSSIYNHFLVDYNGELQGLP 810
Query: 589 YDFTSARMILSGISLDEP--YLQHRLSILMKEEKKSLQA-GKLPVTESYYLMGTVDPTGI 645
+ RM+++ + Y++ L L + L+ + + ++ ++G VD I
Sbjct: 811 SIIDNIRMMINANLNENNNHYIKRVLDRLKRRGLMQLRTKSNILMDQAARVLGVVDDYDI 870
Query: 646 LKSNE-VCIILKDGQVSWE----KVLVYRNPGLHFGDIHVLKATYVKE-LEDFVGTSKYA 699
L E VCI+ + V+ + +++V RNP LH GDI ++A E L + + +A
Sbjct: 871 LDQGEVVCIVKQSLDVNHKYITGEIIVVRNPCLHPGDIRKVRALSENEILSRYNMKNPFA 930
Query: 700 -----IFFPCNGPRSLADEIAGGDFDGDMYFVSRNPEL--------LKHFKESERWMSTS 746
I FPC G S+ + GGD DGD+YFVS +P++ + + +E + + S
Sbjct: 931 EYYNCIVFPCKG-NSIPADCGGGDLDGDIYFVSWDPKVIPKTTEYPMNYDEEKKPAVVVS 989
Query: 747 KNLSANKRLI--DFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESA 804
K + A + DF E E +LN D + + L + D S
Sbjct: 990 KQIQAQGYISAEDFFQENKMIEFLLEYLN------------FDVLGKIDNSHLAIADGSP 1037
Query: 805 EEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVL 864
+ A +RL ++ A+D K G KVE+P +L +++P +M +D S+ +ESTS+L
Sbjct: 1038 D--YAKDPKCIRLAELHSAAVDYV-KHGNKVEIPNNLVTKRWPDFMEKD-SMVYESTSIL 1093
Query: 865 GTIYNTV 871
G +Y V
Sbjct: 1094 GKLYREV 1100
>gi|356507732|ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Glycine max]
Length = 1204
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 101/395 (25%), Positives = 175/395 (44%), Gaps = 54/395 (13%)
Query: 500 IQIRPSMIKVKADRDLSDGQTFNSLEVVK-TSNQPRKTYLSRNLIALLSYGGVPEIFFLD 558
+ +RPSM K ++ T N LE+ T QP +L+R +I LLS GVP+ F
Sbjct: 638 LSLRPSMNKFQS--------THNILEICAWTRFQP--GFLNRQIITLLSALGVPDEIFWQ 687
Query: 559 ILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGIS-LDEPYLQHRLSILMK 617
+ L + + A V ++ +A M+ G S L EP+L+ L+
Sbjct: 688 MQEAMLLKLNQMLVDADIAFDV-LTKSCAEHGNAAAIMLSCGFSPLTEPHLRGMLTSTRA 746
Query: 618 EEKKSL-QAGKLPVTESYYLMGTVDPTGILK-----------SNEVCIILKDGQVSWEK- 664
+ L + ++ V+ +LMG +D G+L+ S E C + S K
Sbjct: 747 AQLWGLREKSRIFVSSGRWLMGVLDELGVLEQGQCFVQVSTPSLENCFSKHGSRFSETKN 806
Query: 665 -------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGG 717
V++ +NP LH GD+ VL+A +L + FP G R +E +G
Sbjct: 807 LHVVKGFVVIAKNPCLHPGDVRVLEAVDAPDLHHL----NDCLVFPQKGDRPHTNEASGS 862
Query: 718 DFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFC 777
D DGD+YFV+ + L+ K S W+ +K L + + + ++ + F+
Sbjct: 863 DLDGDLYFVTWDENLIPPSKRS--WIPMEYAPQESKLL---TRQVMTRDIIEFFV----- 912
Query: 778 PSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEV 837
+++ + A+ + + D S + A+ E + L + A+D P K+G V +
Sbjct: 913 ----RNMVNEHLGAICNAHVVHADSS--DYGALDEKCIHLAELAATAVDFP-KTGKLVTM 965
Query: 838 PEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVK 872
P LK + +P +M ++ S+ S +LG +Y +K
Sbjct: 966 PPHLKPKLYPDFMGKERHQSYRSNKILGRLYRHIK 1000
>gi|296082033|emb|CBI21038.3| unnamed protein product [Vitis vinifera]
Length = 1035
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 111/421 (26%), Positives = 186/421 (44%), Gaps = 60/421 (14%)
Query: 503 RPSMIKVKADRDLSDGQTFNSLEVVK-TSNQPRKTYLSRNLIALLSYGGVPEIFFLDILR 561
RPSM K +D + LE+ T QP +L+R ++ LLS VP+ F +
Sbjct: 479 RPSMNKFLSDHTI--------LEICSWTRFQP--GFLNRQIVTLLSALNVPDKIFWKMQE 528
Query: 562 NALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLD-EPYLQHRLSILMKEEK 620
+ + + ++ A V + T+A M+ +G EP+LQ L+ + +
Sbjct: 529 SMISKLNQMLTDTDVAFDVLIA-SCAEQGNTAAIMLSAGFKPQTEPHLQGMLTCIRAAQF 587
Query: 621 KSL-QAGKLPVTESYYLMGTVDPTGILK-----------SNEVCIILKDGQVSWEK---- 664
L + ++ V +LMG +D G+L+ S E C + + S +K
Sbjct: 588 WGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQVSSPSLENCFLKHGSRFSAQKNLKV 647
Query: 665 ----VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFD 720
V + +NP LH GD+ +L+A LE V + FP G R ++E +G D D
Sbjct: 648 IKGIVAIAKNPCLHPGDVRILEAVDAPGLEHLVD----CLVFPQKGDRPHSNEASGSDLD 703
Query: 721 GDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSN 780
GD+YFV+ L+ K+S W + + K L + E ++ F
Sbjct: 704 GDLYFVTWEETLIPPSKQS--WPPMQYDSAEAKAL---AREVTSLDIIDFF--------- 749
Query: 781 AKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPED 840
K++ + A+ + + D S E A+ E L L A+D P K+G V +P
Sbjct: 750 TKNMVNENLGAICNAHVVHADRS--EYGALDEACLDLAERAATAVDFP-KTGKLVTLPPY 806
Query: 841 LKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSY--EAVDRSVTEIW---KLPCFDD-GV 894
LK + +P +M ++E ++ S +LG +Y +K E V S +I+ K+P +D G+
Sbjct: 807 LKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSESSEQIFGADKVPFDEDLGI 866
Query: 895 P 895
P
Sbjct: 867 P 867
>gi|225430281|ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
Length = 1197
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 111/421 (26%), Positives = 186/421 (44%), Gaps = 60/421 (14%)
Query: 503 RPSMIKVKADRDLSDGQTFNSLEVVK-TSNQPRKTYLSRNLIALLSYGGVPEIFFLDILR 561
RPSM K +D + LE+ T QP +L+R ++ LLS VP+ F +
Sbjct: 641 RPSMNKFLSDHTI--------LEICSWTRFQP--GFLNRQIVTLLSALNVPDKIFWKMQE 690
Query: 562 NALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLD-EPYLQHRLSILMKEEK 620
+ + + ++ A V + T+A M+ +G EP+LQ L+ + +
Sbjct: 691 SMISKLNQMLTDTDVAFDVLIASCAEQGN-TAAIMLSAGFKPQTEPHLQGMLTCIRAAQF 749
Query: 621 KSL-QAGKLPVTESYYLMGTVDPTGILK-----------SNEVCIILKDGQVSWEK---- 664
L + ++ V +LMG +D G+L+ S E C + + S +K
Sbjct: 750 WGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQVSSPSLENCFLKHGSRFSAQKNLKV 809
Query: 665 ----VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFD 720
V + +NP LH GD+ +L+A LE V + FP G R ++E +G D D
Sbjct: 810 IKGIVAIAKNPCLHPGDVRILEAVDAPGLEHLVD----CLVFPQKGDRPHSNEASGSDLD 865
Query: 721 GDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSN 780
GD+YFV+ L+ K+S W + + K L + E ++ F
Sbjct: 866 GDLYFVTWEETLIPPSKQS--WPPMQYDSAEAKAL---AREVTSLDIIDFF--------- 911
Query: 781 AKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPED 840
K++ + A+ + + D S E A+ E L L A+D P K+G V +P
Sbjct: 912 TKNMVNENLGAICNAHVVHADRS--EYGALDEACLDLAERAATAVDFP-KTGKLVTLPPY 968
Query: 841 LKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSY--EAVDRSVTEIW---KLPCFDD-GV 894
LK + +P +M ++E ++ S +LG +Y +K E V S +I+ K+P +D G+
Sbjct: 969 LKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSESSEQIFGADKVPFDEDLGI 1028
Query: 895 P 895
P
Sbjct: 1029 P 1029
>gi|396468594|ref|XP_003838211.1| hypothetical protein LEMA_P117350.1 [Leptosphaeria maculans JN3]
gi|312214778|emb|CBX94732.1| hypothetical protein LEMA_P117350.1 [Leptosphaeria maculans JN3]
Length = 1004
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 147/653 (22%), Positives = 260/653 (39%), Gaps = 138/653 (21%)
Query: 257 DNILLVKF-DEELGG---HRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEK 312
D + VKF DE+ G + N +S+ + +G++V R Y F F + E
Sbjct: 78 DRFIRVKFSDEKNEGVLRNMPGNRAEAVFSRVHHAMTQGVVVAGRYYEFLAFGNSQFREH 137
Query: 313 KKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSL 372
YF SS S + + F H++TV A + +R+
Sbjct: 138 G---------AYFYAPTSSK----------SADDIRISLGKFDHIKTV---AKFGARIGQ 175
Query: 373 ILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTY 432
S T K+ + + ++ I+D V ++G TDG G +S +A
Sbjct: 176 CFSTTRKMR---NSVILQEIDD----------VERNGHTF--TDGVGKLSLFIA------ 214
Query: 433 VYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLN 492
+ KEL + + +PP L Q RL KG L L+
Sbjct: 215 --------------QMAAKELG--------LPNPFDDPPTLFQFRL----GGYKGVLALD 248
Query: 493 KKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVP 552
+ + +RPS K A+ ++ LE++++S + +R +I +LS GV
Sbjct: 249 PSIQKSEVHVRPSQHKFVAE--------YSGLEIIRSSALA-TPFFNRQIIMVLSNLGVS 299
Query: 553 EIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYD-FTSARMILSG-ISLDEPYLQH 610
+ F+ +N ++D S+++ A++ + M+ T A M+L G + EP++
Sbjct: 300 DHVFIRKQQNMVNDYENAMSDEQIAVQKLRKHIDMNQTTLTMAGMVLDGFMKSQEPFVMS 359
Query: 611 RLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKSN-------------------- 649
L + K+L + ++ V + +++G VD + +LK +
Sbjct: 360 LLMLWRSHTIKNLKEKARIAVEDGAFVLGCVDESALLKGHMDDPQSRLDATRDEKLATLP 419
Query: 650 EVCIILKDG------QVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFP 703
E+ + + D ++ ++ RNP LH GD+ V++A + L + + P
Sbjct: 420 EIFMQVDDTTKPGHYKIIEGLCVLARNPSLHPGDLRVVRAVDIPALRHL----RNVVVLP 475
Query: 704 CNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEE- 762
G R LA +GGD DGD Y V + LL N +DF+ E+
Sbjct: 476 QTGERDLASMCSGGDLDGDDYMVLWDSHLLPKI--------------INVPPMDFTPEKP 521
Query: 763 LESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYY 822
+E+E K + + D + L D SA+ L L ++
Sbjct: 522 IETE--KPITSEDISDFFVTYMKNDSLGQIAHAHLAQADISAD--GINDPVCLELAKLHS 577
Query: 823 DALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVS---FESTSVLGTIYNTVK 872
A+D P KSGI + +L+ +K+P +M + S + S +LG +Y+ V+
Sbjct: 578 QAVDYP-KSGIPAMMDRELRPKKYPHFMEKKHLPSNKIYRSRKILGMLYDQVQ 629
>gi|449550827|gb|EMD41791.1| hypothetical protein CERSUDRAFT_147107 [Ceriporiopsis subvermispora
B]
Length = 1211
Score = 97.4 bits (241), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 126/502 (25%), Positives = 208/502 (41%), Gaps = 108/502 (21%)
Query: 407 KDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESH 466
+D + TDG G IS +LA ++KE C AR +
Sbjct: 585 EDSNRRLFTDGVGTISAELA----KAIWKELC----------------------ARRHRN 618
Query: 467 YGEP--PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSL 524
P P Q+R + G+ KG L ++ L + I +R SMIK +A + +
Sbjct: 619 RRRPAYPRAFQIR--FGGS--KGMLSVDYTLEGRIICLRRSMIKFEAPHSMV-------V 667
Query: 525 EVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSF-- 582
EV + ++P K YL+R LI LL GVP D+ + DDA R +L+ +
Sbjct: 668 EVARAFDRPGKYYLNRPLIMLLEGLGVP----YDVFQKLQDDAVQHVEESRGSLETAARL 723
Query: 583 --NYG-GMDYDFTSARMILSGISLDEPYLQ---------HRLSILMKEEKKSLQAGKLPV 630
+G G + TS + L + + EP++Q ++ +++E K ++PV
Sbjct: 724 LETHGLGSSFRLTSVMLALHKLGV-EPFMQDVFWRQMMDFAVNHVLRELK---HHARIPV 779
Query: 631 TESYYLMGTVDPTGILKSNEV--CIILKDGQVSW---EKVLVYRNPGLHFGDIHVLKAT- 684
+ + L+G D G L+ ++ CII DG L+ R+P +H GD+ V+ A
Sbjct: 780 PDGWTLVGVADVHGFLEEGQIFACIIPTDGAAPIYLEGPTLISRSPTIHPGDVQVVHAIG 839
Query: 685 -------YVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFK 737
+ KE + + + F G R L + GGD DGD+Y ++ PEL
Sbjct: 840 KPPPNSPFAKE------SLRNTVVFSIKGSRPLPSCLGGGDLDGDVYNLTTMPEL----- 888
Query: 738 ESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFL 797
R + +A K+L L + A+ + +D + +L
Sbjct: 889 RPRRTYEPASYAAAEKKL-----------LIRPCTMADVADFVAEYIISDTLGIIAINWL 937
Query: 798 TLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKF--------PCY 849
+ D+S E L L ++ DA+D P KSG V V E++ KF P
Sbjct: 938 IIADQSVE--GIRDPACLLLAALHSDAVDYP-KSGRPVPV-ENIPRLKFRAKPDWNAPET 993
Query: 850 MRRDESVSFESTSVLGTIYNTV 871
++ D +ES +G ++ ++
Sbjct: 994 LKGDAVEFYESQRAIGKLFRSI 1015
>gi|147860348|emb|CAN82568.1| hypothetical protein VITISV_040047 [Vitis vinifera]
Length = 697
Score = 97.4 bits (241), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 120/493 (24%), Positives = 198/493 (40%), Gaps = 97/493 (19%)
Query: 406 YKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTES 465
++DG + +DG G IS +LA + KC ST
Sbjct: 60 HRDGTTYVFSDGIGKISAELAHRVAI-----KCGCKSST--------------------- 93
Query: 466 HYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLE 525
P Q+R Y G KG + ++ + + +R SM K +++ +L+
Sbjct: 94 -----PSAFQIR--YGG--YKGVVAVDPT-SSRKLSLRKSMFKYESEN--------TNLD 135
Query: 526 VVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYG 585
V+ S R +L+R LI LLS GV + F R A+D + + A +
Sbjct: 136 VLSWSKY-RPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDPLRAQEALELMS 194
Query: 586 GMDYDFTSARMILSGISLD-EPYLQHRLSILMKEEKKSLQA-GKLPVTESYYLMGTVDPT 643
+ M++ G D EP+L L + L+ ++ V +MG +D T
Sbjct: 195 PGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDET 254
Query: 644 GILKSNEVCIIL---------------------KDGQVSWEKVLVYRNPGLHFGDIHVLK 682
L+ EV + + D + KV+V +NP LH GD+ +L
Sbjct: 255 RTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHDNFILEGKVVVAKNPCLHPGDVRILS 314
Query: 683 ATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERW 742
A V L V + FP G R DE +G D DGD+YFV + +L+ R
Sbjct: 315 AVDVPALHHMVD----CVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDLI-----PPRQ 365
Query: 743 MSTSKNLSANKRLIDFS--LEELESELFKLFLNTRF-CPSNAKSLAADCWQAVMDRFLTL 799
++ A +++D +EE+E N + +NA ++ AD
Sbjct: 366 INPMDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFAD------------ 413
Query: 800 GDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFE 859
E A+ L ++ AL+ PK +G+ E+P L V+++P +M + ++E
Sbjct: 414 ----KEYDKALCPPCKELAKLFSIALEFPK-TGVPAEIPFHLHVKEYPDFMEKANKPTYE 468
Query: 860 STSVLGTIYNTVK 872
S SV+G ++ VK
Sbjct: 469 SQSVIGKLFREVK 481
>gi|356515444|ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Glycine max]
Length = 1204
Score = 97.4 bits (241), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 101/395 (25%), Positives = 175/395 (44%), Gaps = 54/395 (13%)
Query: 500 IQIRPSMIKVKADRDLSDGQTFNSLEVVK-TSNQPRKTYLSRNLIALLSYGGVPEIFFLD 558
+ +RPSM K ++ T N LE+ T QP +L+R +I LLS GVP+ F
Sbjct: 638 LSLRPSMNKFQS--------THNILEICAWTRFQP--GFLNRQIITLLSALGVPDEVFWQ 687
Query: 559 ILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGIS-LDEPYLQHRLSILMK 617
+ L + + A V ++ +A M+ G S L EP+L+ L+
Sbjct: 688 MQEAMLLKLNQMLVDADIAFDV-LTKSCAEHGNAAAIMLSCGFSPLTEPHLRGMLTSTRA 746
Query: 618 EEKKSL-QAGKLPVTESYYLMGTVDPTGILK-----------SNEVCIILKDGQVSWEK- 664
+ L + ++ V+ +LMG +D +G+L+ S E C + S K
Sbjct: 747 AQLWGLREKSRIFVSSGRWLMGVLDESGVLEQGQCFVQVSTPSLENCFSKHGSRFSETKN 806
Query: 665 -------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGG 717
V++ +NP LH GD+ VL+A +L + FP G R +E +G
Sbjct: 807 LHVVKGFVIIAKNPCLHPGDVRVLEAVDAPDLHHL----NDCLVFPQKGDRPHTNEASGS 862
Query: 718 DFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFC 777
D DGD+YFV+ + L+ K S M + S K + + + ++ + F+
Sbjct: 863 DLDGDLYFVTWDENLIPPSKRSWIPMEYAPQESKLK-----TRQVMTRDIIEFFV----- 912
Query: 778 PSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEV 837
+++ + A+ + + D S + A+ E + L + A+D P K+G V +
Sbjct: 913 ----RNMVNEHLGAICNAHVVHADSS--DYGALDEKCIHLAELAATAVDFP-KTGKLVTM 965
Query: 838 PEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVK 872
P LK + +P +M ++ S+ S +LG +Y +K
Sbjct: 966 PPHLKPKLYPDFMGKERHQSYRSKKILGRLYRRIK 1000
>gi|4375829|emb|CAA09894.1| RNA-directed RNA polymerase [Arabidopsis thaliana]
Length = 513
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 131/529 (24%), Positives = 222/529 (41%), Gaps = 92/529 (17%)
Query: 354 FMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALI 413
F H+R +VA Y +RL S + + +N+ E E D + + G +
Sbjct: 8 FDHIR---NVAKYAARLGQSFSSSRE------TLNVRSDEIEVIPDVE---IISLGTRYV 55
Query: 414 HTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLL 473
+DG G IS + A R + RK FS P
Sbjct: 56 FSDGIGKISAEFA-------------------RKVARKCGLTEFS------------PSA 84
Query: 474 MQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSN-Q 532
Q+R Y G KG + ++ + + +R SM K +++ L+V+ S Q
Sbjct: 85 FQIR--YGG--YKGVVAVDPN-SSKKLSLRKSMSKFESEN--------TKLDVLAWSKYQ 131
Query: 533 PRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALK-VSFNYGGMDYDF 591
P Y++R LI LLS GV + F R +D + ++ A + + G + +
Sbjct: 132 P--CYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHEALGLMAPGENTNI 189
Query: 592 TSARMILSGISLD-EPYLQHRLSILMKEEKKSLQA-GKLPVTESYYLMGTVDPTGILKSN 649
A +IL G D EP+L L + L+ ++ ++ +MG +D T L+
Sbjct: 190 LKA-LILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCLDETRTLEYG 248
Query: 650 EVCIILKDGQVSWEK------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFP 703
+V + D + V+V +NP LH GD+ VL+A V L V + FP
Sbjct: 249 QVVVQYSDPMRPGRRFIITGPVVVAKNPCLHSGDVRVLQAVNVPALNHMVD----CVVFP 304
Query: 704 CNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEEL 763
G R +E +G D DGD+YFV + EL+ + SE T + D ++EE+
Sbjct: 305 QKGLRPHPNECSGSDLDGDIYFVCWDQELVPP-RTSEPMDYTPEPTQILDH--DVTIEEV 361
Query: 764 ESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYD 823
E +N ++ + A+ A D+ E A + + L +
Sbjct: 362 EEYFANYIVN------DSLGIIANAHTAFADK---------EPLKAFSDPCIELAKKFST 406
Query: 824 ALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVK 872
A+D PK +G+ +P+ L V+++P +M + + ++ES +V+G ++ VK
Sbjct: 407 AVDFPK-TGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVK 454
>gi|157152684|gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
Length = 1117
Score = 97.1 bits (240), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 159/701 (22%), Positives = 271/701 (38%), Gaps = 152/701 (21%)
Query: 215 SLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGD-DNILLVKF-DEE----- 267
S+ D G ++ + T F GP +N + L+ D DN L V F DEE
Sbjct: 348 SITLDDGLVYVRRV-LVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKIH 406
Query: 268 ---LGGHRSSNNW--NDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVK 322
L S+ N D Y + R G ++G + + F F S+S ++
Sbjct: 407 STDLLPRASTGNGVRTDIYLRILSTLRNGFVIGDKKFEFLAF------------SSSQLR 454
Query: 323 CYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEV 382
V M +S G T ++ R + + +VA Y +RL + + +
Sbjct: 455 DNSVWMFASR----------PGLTANDIRTWMGGFQQIRNVAKYAARLGQSFGSSRE-TL 503
Query: 383 DFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDD 442
R +E I D C N ++ DG I D + +A+KC Y C
Sbjct: 504 SVGRHEVEVIPDVVCSLHGTNYIFSDGIGKISAD----FARRVAVKC-GLQYTPSC---- 554
Query: 443 STERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQI 502
Q+R Y G KG + ++ + +
Sbjct: 555 -------------------------------FQIR--YGG--YKGVVAVDP-YSSMKLSL 578
Query: 503 RPSMIKVKADRDLSDGQTFNSLEVVKTSN-QPRKTYLSRNLIALLSYGGVPEIFFLDILR 561
R SM+K +++ L+V+ S QP YL+R L+ LLS GV + F
Sbjct: 579 RNSMLKYESNN--------IKLDVLGWSKYQP--CYLNRQLVTLLSTLGVKDDVFEQKQN 628
Query: 562 NALDDARGVFSNKRNALK-VSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEK 620
A+D + + A + + G + + + + EP+L L +
Sbjct: 629 EAVDQLDAILHDTLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKL 688
Query: 621 KSLQA-GKLPVTESYYLMGTVDPTGILKSNEV--------------------------CI 653
L+ ++ + +MG +D + L+ +V C
Sbjct: 689 LDLRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGTGRRQFYEESHPFNDSGSTNCD 748
Query: 654 ILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADE 713
+ +G V+V +NP LH GDI VL+A V L V + FP G R +E
Sbjct: 749 FILEGN-----VVVAKNPCLHPGDIRVLRAVDVPALHHMVD----CVVFPQKGKRPHPNE 799
Query: 714 IAGGDFDGDMYFVSRNPELL--KHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLF 771
+G D DGD+YFV +P+L+ + F+ + + S L D ++EE+E E F
Sbjct: 800 CSGSDLDGDIYFVCWDPDLVPPRQFQPMDYTPAPSTQLDH-----DVTIEEVE-EYF--- 850
Query: 772 LNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKS 831
T + +++ + A+ DR E AM + +L ++ A+D P K+
Sbjct: 851 --TNYIVNDSLGIIANAHVVFADR---------EPDMAMSDPCKQLAQLFSIAVDFP-KT 898
Query: 832 GIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVK 872
G+ E+P L+ +++P +M + + ++ S V+G ++ VK
Sbjct: 899 GVPAEIPSQLRPKEYPDFMEKPDKPTYHSEKVIGKLFQKVK 939
>gi|395327643|gb|EJF60041.1| RdRP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 734
Score = 97.1 bits (240), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 116/242 (47%), Gaps = 22/242 (9%)
Query: 500 IQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDI 559
I RPSM K + G T LE+ ++ L+ +ALL GVP F +
Sbjct: 224 IAYRPSMFKY------AGGPT--CLELNNHNSPSASARLNVQFMALLLTLGVPFAIFQRL 275
Query: 560 LRNALDDARGVFSNKRNALKVSFNYGGMDY----DFTSA--RMILSGISLDEPYLQHRLS 613
+ + LD + +++ AL+ + G +D DF M+L+ L EPY++H+L
Sbjct: 276 VLDQLDLIGSILTDREKALQ--YVKGELDAAAEDDFAQGLYAMLLARQDLSEPYVRHKLE 333
Query: 614 ILMKEEKKSLQAG-KLPVTESYYLMGTVDPTGILKSNEVCIILKD-GQVSWEKVLVYRNP 671
+++ +L+ L + +S YL G VD G+L NEV + L + V V+V RNP
Sbjct: 334 TFQRKQYITLRNKMSLRIPDSAYLFGVVDEAGVLAPNEVHVNLPNRSGVLVRDVIVGRNP 393
Query: 672 GLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPE 731
+ GD L+A L + I F N S+ D IAGGD DGDMYFV +P
Sbjct: 394 SYYPGDFRKLRAVDHPSLRH----HRNCIVFSSNAAHSIPDTIAGGDLDGDMYFVCWDPC 449
Query: 732 LL 733
L+
Sbjct: 450 LI 451
>gi|255540733|ref|XP_002511431.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
gi|223550546|gb|EEF52033.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
Length = 983
Score = 97.1 bits (240), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 141/571 (24%), Positives = 241/571 (42%), Gaps = 94/571 (16%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P Q+R Y G KG + +++ + + +R SM K +++ + L V K S
Sbjct: 420 PSAFQIR--YGG--YKGVIAVDRN-SFRKLSLRDSMCKFESENRM--------LNVTKWS 466
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYD 590
+ YL+R +I LL+ GV + F + + L + +N+ +AL V N +
Sbjct: 467 -ESMPCYLNREIITLLTTLGVKDEIFEGLQQQQLQLLNRMLTNRESALNVLENLAWANCK 525
Query: 591 FTSARMILSGISLDEPYLQHRLSILMKEEKKSLQA-----GKLPVTESYYLMGTVDPTGI 645
+M++ G EP ++ LS++++ ++L ++ V + L+G +D T I
Sbjct: 526 NILIKMLVQGY---EPNVEPYLSMMLQAYHENLLVELRSRCRIFVPKGRILIGCLDETRI 582
Query: 646 LKSNEVCII-------LKDG-QVSWE-----------KVLVYRNPGLHFGDIHVLKATYV 686
L +V + L+D Q S+ KV+V +NP LH GDI VL+A Y
Sbjct: 583 LDYGQVYVRITMTKAELQDADQASFHRVDETTAVVTGKVIVTKNPCLHPGDIRVLEAVYE 642
Query: 687 KELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTS 746
ELE+ I FP G R +E +GGD DGD +F+S + L+ E+E M
Sbjct: 643 VELEEKGLVD--CILFPQKGERPHPNECSGGDLDGDQFFISWDKGLIP--GETESPMDY- 697
Query: 747 KNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEE 806
+ K D +LEE++ +N D A+ L D E
Sbjct: 698 QGRRPRKMDHDVTLEEIQKFFIDYMIN-------------DTLGAISTAHLVHADR--EP 742
Query: 807 KAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGT 866
A L+L ++ A+D K +G E+P+ LK ++FP +M R + + S VLG
Sbjct: 743 DKARSSKCLQLAELHSMAVDFAK-TGAPAEMPKALKPKEFPDFMERIDKKMYISGGVLGK 801
Query: 867 IYNTVKSYEAVDRSVTEIW-------------KLPCFDDGVPEAC------MTKWKGYYD 907
+Y RS +W ++ F++ V A + K G D
Sbjct: 802 LYRGTLDSTRQQRS-KFVWTENIAEATYDHDLEVKGFEEFVEIAISHKDMYVEKLSGLMD 860
Query: 908 QYRWEMKEAIDKCTVERE------------EAAELVIEKYKQILYGAAEFEQSTRTLEEI 955
Y + ++ I ++ + + + ++ K + A E+ +S +E
Sbjct: 861 YYEAKKEDEILTGNLQNKAMYLQRDNRRYGDTKDRILISVKSLQKEAKEWFESCCQAKEK 920
Query: 956 YNEALAIYNITYDLAASRRQVSYCSFAWRVA 986
A A Y++TY + + ++ SF W VA
Sbjct: 921 QRLASAWYHVTYHPSYFQEGITCLSFPWIVA 951
>gi|15229153|ref|NP_190519.1| RNA-dependent RNA polymerase 6 [Arabidopsis thaliana]
gi|75337188|sp|Q9SG02.1|RDR6_ARATH RecName: Full=RNA-dependent RNA polymerase 6; Short=AtRDRP6; AltName:
Full=Protein SILENCING DEFECTIVE 1; AltName: Full=Protein
SUPPRESSOR OF GENE SILENCING 2; AltName:
Full=RNA-directed RNA polymerase 6
gi|12324444|gb|AAG52184.1|AC012329_11 putative RNA-directed RNA polymerase; 73997-69985 [Arabidopsis
thaliana]
gi|6899955|emb|CAB71285.1| RNA-directed RNA polymerase-like protein [Arabidopsis thaliana]
gi|8164028|gb|AAF73959.1| SGS2 [Arabidopsis thaliana]
gi|332645029|gb|AEE78550.1| RNA-dependent RNA polymerase 6 [Arabidopsis thaliana]
Length = 1196
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 109/422 (25%), Positives = 191/422 (45%), Gaps = 63/422 (14%)
Query: 537 YLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARM 596
+L+R +I LLS GVP+ F D+ + L + + A +V + T+A M
Sbjct: 665 FLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEV-LTASCAEQGNTAAIM 723
Query: 597 ILSGISLD-EPYLQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKSNEVCII 654
+ +G EP+L+ LS + + L + ++ VT +LMG +D GIL+ + I
Sbjct: 724 LSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAGILEHGQCFIQ 783
Query: 655 LK--------------------DGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVG 694
+ D +V V + +NP LH GD+ +L+A V +L
Sbjct: 784 VSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRILEAVDVPQLHHMYD 843
Query: 695 TSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKR 754
+ FP G R +E +G D DGD+YFV+ + +L+ ++S M +A ++
Sbjct: 844 ----CLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMHYD---AAEEK 896
Query: 755 LIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENM 814
+ ++ ++ F A++LA + + + + D S E AM E
Sbjct: 897 SLGRAVN--HQDIIDFF---------ARNLANEQLGTICNAHVVHADRS--EYGAMDEEC 943
Query: 815 LRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVK-- 872
L L + A+D P K+G V +P LK + +P +M +++ +++S +LG +Y VK
Sbjct: 944 LLLAELAATAVDFP-KTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEV 1002
Query: 873 --------SYEAVDRSVT---EIWKLPCFDDGVPEA----CMTKWK--GYYDQYRWEMKE 915
S E+ D S + ++P F+D +PEA C+ + G QY+ + +E
Sbjct: 1003 YDEDAEASSEESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEE 1062
Query: 916 AI 917
I
Sbjct: 1063 EI 1064
>gi|380480880|emb|CCF42174.1| RNA dependent RNA polymerase [Colletotrichum higginsianum]
Length = 1271
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 156/646 (24%), Positives = 247/646 (38%), Gaps = 134/646 (20%)
Query: 257 DNILLVKFDEELGGHRSSNNWNDS-YSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKD 315
D + V+F +EL + N+ D + + + GI +G R Y F F + E
Sbjct: 476 DRFIRVQFTDELYKGKIYNDAGDEVFDRIYRALKRGIKIGNRIYEFLAFGNSQIRE---- 531
Query: 316 PSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILS 375
YF F Y T + R + +VA Y +R+ S
Sbjct: 532 -----CAVYF-------FCPTDY------VTCDDIRKWMGEFNHIKNVAKYAARIGQCFS 573
Query: 376 KTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYK 435
T ++ I + RIE + KD + GE +DG G IS+ LA
Sbjct: 574 TTREIR----GITVPRIE----QAKD----IQRGEYCF-SDGVGKISKLLA--------- 611
Query: 436 EKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKL 495
E N+ E P Q R+ KG L +
Sbjct: 612 EMVVNEMGQEAV---------------------GIPSAFQFRM----GGCKGMLAVWPDA 646
Query: 496 PPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIF 555
+ IRPS K KA FN LE++K++ T L+R I +L+ GV
Sbjct: 647 KGLEVHIRPSQEKFKAQ--------FNGLEIIKSAQYSVAT-LNRQTITILTTLGVKSEP 697
Query: 556 FLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSAR---MILSGI---SLDEPYLQ 609
L + + + + ++ A + Y +D + TS ++ G + EP++
Sbjct: 698 ILKLAKQQIQNYEKAMDDQVAATGLLGKY--IDENMTSLTIKDLVCWGFMDKEVQEPFVL 755
Query: 610 HRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKSNEVC--------------II 654
L++ K L + ++ + +S +L+G +D TGIL+ + I
Sbjct: 756 TILNLWRIWSMKLLKEKARVIIEQSAFLLGCLDETGILRGHSKATEGKTTRNIHDLPQIF 815
Query: 655 LK-----DGQ--VSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGP 707
L+ DG+ +V RNP LH GDI V++A V L K + FP G
Sbjct: 816 LQIPNSEDGKHYCVTGVCIVGRNPSLHPGDIRVVEAVDVPTLHHL----KNVVVFPSIGD 871
Query: 708 RSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESEL 767
R + ++GGD DGD +FV NP+L+ W N A + + L
Sbjct: 872 RDVPSMLSGGDLDGDDFFVIWNPDLI-----PREWHHPPMNYIAPRAKV------LRRGF 920
Query: 768 FKLF-LNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALD 826
K+ L T F + + DC V L L D S A L+L ++ A+D
Sbjct: 921 VKVSDLRTFF----VRYIQNDCLALVATAHLALADHS--RVGAKDHRCLKLAELHSKAVD 974
Query: 827 APKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVK 872
K + + P DL + +P +M R ++ S+S LG IY+ ++
Sbjct: 975 YVKTAD-PAKFPPDLHPKAWPHFMNR--RCTYRSSSALGQIYDMIQ 1017
>gi|222618586|gb|EEE54718.1| hypothetical protein OsJ_02054 [Oryza sativa Japonica Group]
Length = 1571
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 136/541 (25%), Positives = 226/541 (41%), Gaps = 116/541 (21%)
Query: 345 KTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNV 404
KT EA +M T +VA + +R+ S T ++ + + E + D +V
Sbjct: 940 KTTVEAIRKWMGRFTSKNVAKHAARMGQCFSST------YATVTMRPDEVDESFD---DV 990
Query: 405 VYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTE 464
V+ + I +DG G I+ DLAL+ +R +L N
Sbjct: 991 VHNE---YIFSDGIGKITPDLALEV------------------AERLQLTDN-------- 1021
Query: 465 SHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQT-IQIRPSMIKVKADRDLSDGQTFNS 523
PP Q+R KG + + + T + +RPSM K +++ +
Sbjct: 1022 -----PPSAYQIRF----AGFKGVIAVWQGHGDGTRLFLRPSMRKFESNHLV-------- 1064
Query: 524 LEVVK-TSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSF 582
LEVV T QP +L+R +I LLS VP+ F + L + + S++ A +V
Sbjct: 1065 LEVVSWTKFQP--GFLNRQIIILLSSLNVPDSIFWQMQETMLSNLNNILSDRDVAFEV-L 1121
Query: 583 NYGGMDYDFTSARMILSGI-SLDEPYLQHRL-SILMKEEKKSLQAGKLPVTESYYLMGTV 640
D T+A M+ +G EP+L+ L +I + + L+ ++ V + +LMG +
Sbjct: 1122 TTSCADDGNTAALMLSAGFEPRTEPHLKAMLLAIRSAQLQDLLEKARIFVPKGRWLMGCL 1181
Query: 641 DPTGILKSNEVCIILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKY-- 698
D G+L+ + C I + L + +VK F T K
Sbjct: 1182 DELGVLEQGQ-CFIR--------------------ATVPSLNSYFVKHGSRFSSTDKNTE 1220
Query: 699 AIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTS----KNLS---A 751
I G R A+E +G D DGD+YFV+ + +L+ K+S M S K L +
Sbjct: 1221 VILGTVKGERPHANEASGSDLDGDLYFVTWDEKLIPPGKKSWNPMDYSPPEAKQLPRQVS 1280
Query: 752 NKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMK 811
+IDF L+ + SE R C NA + AD E AM
Sbjct: 1281 QHDIIDFFLKNMISENLG-----RIC--NAHVVHADL----------------SEYGAMD 1317
Query: 812 ENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTV 871
E + L + A+D PK + + +P LK + +P +M +++ S++S +LG +Y ++
Sbjct: 1318 EKCIHLAELAATAVDFPKTGKLAI-MPPHLKPKVYPDFMGKEDGQSYKSEKILGRLYRSI 1376
Query: 872 K 872
+
Sbjct: 1377 Q 1377
>gi|384499712|gb|EIE90203.1| hypothetical protein RO3G_14914 [Rhizopus delemar RA 99-880]
Length = 595
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 138/290 (47%), Gaps = 38/290 (13%)
Query: 594 ARMILSG-ISLDEPYLQHRLSI----LMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKS 648
A +I +G + +PY+++ L++ ++KE KK K+ V + +L+G +D TG L
Sbjct: 36 ASIIQAGFLERGDPYIKNLLNLFRVNVLKELKKK---AKILVPQGAFLLGVMDETGTLDE 92
Query: 649 NEVCIILKDG-------QVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIF 701
EV I + D QV + V+RNP H GD+ V+ A L V +
Sbjct: 93 GEVYIQVWDNSHSGTMKQVITGECAVFRNPCFHPGDVRVVTAVDRPNLSHLVNV----VV 148
Query: 702 FPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLE 761
FP G R + +GGD DGD Y + +P+L+ K+ T+ S +++ D +
Sbjct: 149 FPAKGYRDIPSMCSGGDLDGDDYTIFWDPKLIPTRKDVAPMDYTA---SDPRKVEDVKIR 205
Query: 762 ELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIY 821
+++ + F+N + D + + L D S EK AM + L ++
Sbjct: 206 DIQ----RFFVNY---------INNDNLGQIANAHLATADFS--EKGAMDGRCILLAQLH 250
Query: 822 YDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTV 871
+A+D PK SG + EDL V FP +M++ + S+ S VLG I+ ++
Sbjct: 251 SEAVDFPK-SGKPATLSEDLIVRTFPDFMQKKDKESYASKKVLGHIFRSI 299
>gi|384245028|gb|EIE18524.1| RdRP-domain-containing protein, partial [Coccomyxa subellipsoidea
C-169]
Length = 723
Score = 96.7 bits (239), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 149/648 (22%), Positives = 249/648 (38%), Gaps = 142/648 (21%)
Query: 257 DNILLVKFDEELGGHRSSNN----WNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEK 312
D L V F EE GG N D + I ++G+ + R + F G
Sbjct: 17 DRFLRVTFCEENGGRLCFANDIPRLEDYMDRMEGILKDGLELADRHFDLLAFSSGQ---- 72
Query: 313 KKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSL 372
VR +S+ F + SG T + R + VA + +R+
Sbjct: 73 -------------VREQSAWF----WAAPDSGPTAADIRAWMGDFDAIRCVAKFTARMGQ 115
Query: 373 ILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTY 432
S T VD ++ ++ P +++G +DG G IS +L+
Sbjct: 116 CFSST----VDTLKLQAYTVQTVPDVERNGYCF---------SDGVGRISVELS------ 156
Query: 433 VYKEKCTNDDSTERSI-DRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLL 491
R++ DR E + R + G P Q+R Y G KG + L
Sbjct: 157 -------------RAVADRLE------QLGRCPA--GWLPRAYQIR--YAGC--KGMVSL 191
Query: 492 NKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPR--KTYLSRNLIALLSYG 549
+ L + ++RPSM K +A S ++++ + R YL+R ++ LL
Sbjct: 192 HMGLRGKRFEVRPSMNKFEA-----------SAQMLEICDYARYVPGYLNRQIVTLLMQK 240
Query: 550 --GVPEIFFLDI-LRNALDDARGVFSNKRNALKVS----FNYGGMDYDFTSARMILSGIS 602
GVP F + R AL + NK L+ +G +A +I +G
Sbjct: 241 CLGVPNSVFQRLQARTALFNL-----NKSGQLRCFCLNLIKWGDAAIMLEAAHIIRAGFD 295
Query: 603 LD-EPYLQHRLSILMKEEKKSLQA-GKLPVTESYYLMGTVDPTGILKSNEVCIILKD--- 657
+ EPYL+ L L + L+A ++ V ++ LMG +D G+L+ +V + +
Sbjct: 296 VGTEPYLKSILLCLRAHLLQDLKAKTRVRVPKAALLMGVMDEEGVLEPGQVFLSVNSLPT 355
Query: 658 ---GQVSWEKVLVYRNPGLHFGDIHVLKATYV---KELEDFVGTSKYAIFFPCNGPRSLA 711
+ V+V +NP H GD+ +A + EL V + FP G R
Sbjct: 356 MALPAIVTGTVVVAKNPCFHPGDVRKFQARPLFRSPELHHLVN----CLVFPQKGQRPHP 411
Query: 712 DEIAGGDFDGDMYFVSRNPELL--------KHFKESERWMSTSKNLSANKRLIDFSLEEL 763
DE +G D DGD YFVS P LL F + + S + F ++ +
Sbjct: 412 DECSGSDLDGDQYFVSWEPGLLFPGPNREPMSFHSQDPVLIPEGQASLVGDVAQFFMDYI 471
Query: 764 ESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYD 823
++L + N ++ K A C Q L+L ++ +
Sbjct: 472 FNDLLGIIANAHLATADIKPDGAQCSQC-----------------------LQLARLHSN 508
Query: 824 ALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTV 871
A+D KSG E DL+ +P +M + + ES++++G ++ +
Sbjct: 509 AVDF-TKSGRPAEFSRDLRPLSYPDFMMKKNKETHESSTIIGQLFRAI 555
>gi|242812975|ref|XP_002486072.1| RNA-directed RNA polymerase (Sad-1), putative [Talaromyces stipitatus
ATCC 10500]
gi|218714411|gb|EED13834.1| RNA-directed RNA polymerase (Sad-1), putative [Talaromyces stipitatus
ATCC 10500]
Length = 1341
Score = 96.7 bits (239), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 153/654 (23%), Positives = 263/654 (40%), Gaps = 142/654 (21%)
Query: 257 DNILLVKF-DEELGGHRSS---NNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEK 312
D L V+F DE+ G +S + ++ +S+ GI++G R Y F F + E
Sbjct: 533 DRFLRVRFKDEKFEGRINSTHHDTMDEIFSRIKRTMTNGIVLGDRKYEFLAFGNSQFREH 592
Query: 313 KKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSL 372
YF S A + T R + +VA Y +RL
Sbjct: 593 G---------AYF--FASDAHV-----------TASNIRAWMGEFSDIKNVAKYAARLGQ 630
Query: 373 ILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTY 432
S T ++ R+ ++RI D + G + +DG G IS LA
Sbjct: 631 CFSTTRA--INTCRVELKRIPDV----ERGPYTF--------SDGVGRISRFLA------ 670
Query: 433 VYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLN 492
+ ++EL +D EPP Q RL KG L+L+
Sbjct: 671 --------------QMTQQELNIRTAD--------QEPPSAYQFRL----GGCKGMLVLS 704
Query: 493 KKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVP 552
+ + I+IRPS K A+ LE+++ S T L+R LIA+LS G+
Sbjct: 705 DEPRGREIEIRPSQEKFPANH--------QGLEIIRWSQFSSAT-LNRQLIAVLSSLGIE 755
Query: 553 EIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLD------EP 606
+ F L+ + + R A+ + Y D +++S I D +P
Sbjct: 756 DKVFHGKLQRMVSNLEEATHYDRAAMHLLQKY----IDPNEMTLVISKIVSDGFLQARDP 811
Query: 607 YLQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILK-----SNEVCIILKDGQV 660
++ +++ + K L + K+ + + ++G +D T LK + E + +D ++
Sbjct: 812 FITSVITLWKAWQIKYLKEKAKITIEDGACVLGVMDETATLKGFSYENVEKVHLSRDSKL 871
Query: 661 SW------------EK--------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAI 700
EK ++ RNP LH GDI V++A EL K +
Sbjct: 872 DALPEIFLQVYRADEKKYGVVEGVCILARNPSLHPGDIRVVRAVNRSELAHL----KDVV 927
Query: 701 FFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSL 760
P G R +A +GGD DGD Y V + +L+ +W T + +A K ++ +
Sbjct: 928 VLPQVGDRDIASMCSGGDLDGDDYLVIWDQDLI-----PSQWFRTPMDYTAIKG-VNLNR 981
Query: 761 EELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINI 820
+++ F+N + +++ A A D +L G ESA+ +RL +
Sbjct: 982 AVTVNDITTFFVN--YMKNDSLPKIAHAHMAWAD-YLEDGVESAK--------CIRLAQL 1030
Query: 821 YYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRD---ESVSFESTSVLGTIYNTV 871
+ +A+D K+G +P DL+ K+P +M ++ + + S +LG +Y+ V
Sbjct: 1031 HSNAVDY-NKTGEPAYLPRDLRPRKWPHFMEKNYKPKDQIYHSEKILGQLYDAV 1083
>gi|8248473|gb|AAF74208.1|AF268093_1 RNA-dependent RNA polymerase [Arabidopsis thaliana]
Length = 1196
Score = 96.7 bits (239), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 114/432 (26%), Positives = 190/432 (43%), Gaps = 76/432 (17%)
Query: 537 YLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARM 596
+L+R +I LLS GVP F D+ + L + + A +V + T+A M
Sbjct: 665 FLNRQIITLLSVLGVPVEIFWDMQESMLYKLDRILVDTDVAFEV-LTASCAEQGNTAAIM 723
Query: 597 ILSGISLD-EPYLQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKSNEVCII 654
+ +G EP+L+ LS + + L + ++ VT +LMG +D GIL+ + I
Sbjct: 724 LSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAGILEHGQCFIQ 783
Query: 655 L--------------------KDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVG 694
+ KD +V V + +NP LH GD+ +L+A V +L
Sbjct: 784 VSKPSIENCFSKHGSRFKETKKDLEVVKGYVAIAKNPCLHPGDVRILEAVDVPQLHHMYD 843
Query: 695 TSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWM----STSKNLS 750
+ FP G R +E +G D DGD+YFV+ + +L+ ++S M + K+L
Sbjct: 844 ----CLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMHYDAAEEKSLG 899
Query: 751 ---ANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEK 807
++ +IDF L +E NA + AD E
Sbjct: 900 RAVNHQDIIDFFARNLANEQLGTI-------CNAHVVHAD----------------RSEY 936
Query: 808 AAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTI 867
AM E L L + A+D P K+G V +P LK + +P +M +++ +++S +LG +
Sbjct: 937 GAMDEECLLLAELAATAVDFP-KTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRL 995
Query: 868 YNTVK----------SYEAVDRSVT---EIWKLPCFDDGVPEACMTKWKGYYDQYRWEMK 914
Y VK S E+ D S + ++P F+D +PEA W G+ Y ++
Sbjct: 996 YRPVKEVYDEDAEASSEESTDPSAIPYDAVLEIPGFEDLIPEA----W-GHKCSYDGQLI 1050
Query: 915 EAIDKCTVEREE 926
+ + V++EE
Sbjct: 1051 GLLGQYKVQKEE 1062
>gi|297819596|ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis lyrata subsp. lyrata]
gi|297323519|gb|EFH53940.1| RNA-dependent RNA polymerase 6 [Arabidopsis lyrata subsp. lyrata]
Length = 1197
Score = 96.3 bits (238), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 111/448 (24%), Positives = 200/448 (44%), Gaps = 69/448 (15%)
Query: 519 QTFNS----LEVVK-TSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSN 573
+ FNS LE+ T QP +L+R +I LLS GVP+ F D+ + L + +
Sbjct: 644 KKFNSKHTILEICSWTRFQP--GFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDD 701
Query: 574 KRNALKVSFNYGGMDYDFTSARMILSGISLD-EPYLQHRLSILMKEEKKSL-QAGKLPVT 631
A +V + T+A M+ +G EP+L+ LS + + L + ++ VT
Sbjct: 702 TDVAFEV-LTASCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVT 760
Query: 632 ESYYLMGTVDPTGILKSNEVCIILK--------------------DGQVSWEKVLVYRNP 671
+LMG +D G L+ + I + D +V V + +NP
Sbjct: 761 SGRWLMGCLDEAGKLEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNP 820
Query: 672 GLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPE 731
LH GD+ +L+A V +L + FP G R +E +G D DGD+YFV+ + +
Sbjct: 821 CLHPGDVRILEAVDVPQLHHMYD----CLIFPKKGDRPHTNEASGSDLDGDLYFVAWDQK 876
Query: 732 LLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQA 791
L+ ++S M +A ++ + ++ ++ F A+++A +
Sbjct: 877 LIPPNRKSYPAMHYD---AAEEKTLGRAVN--HQDIIDFF---------ARNMANEHLGT 922
Query: 792 VMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMR 851
+ + + D S E AM E + L + A+D+P K+G V +P LK + +P +M
Sbjct: 923 ICNAHVVHADRS--EYGAMDEECVLLAELAATAVDSP-KTGKIVSMPFHLKPKLYPDFMG 979
Query: 852 RDESVSFESTSVLGTIYNTVKSYEAVDRSVTEI-------------WKLPCFDDGVPEAC 898
+++ +++S+ +LG +Y VK D + ++P F+D +PEA
Sbjct: 980 KEDYQTYKSSKILGRLYRRVKEVYDEDAEASSEESSDPSDIPYDIDLEIPGFEDLIPEA- 1038
Query: 899 MTKWKGYYDQYRWEMKEAIDKCTVEREE 926
W G+ Y ++ + + V++EE
Sbjct: 1039 ---W-GHKCSYDRQLIGLLGQYKVQKEE 1062
>gi|402075074|gb|EJT70545.1| RNA-dependent RNA polymerase 1 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1551
Score = 96.3 bits (238), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 161/692 (23%), Positives = 270/692 (39%), Gaps = 157/692 (22%)
Query: 227 HCHISTKGNCTFKGPYLN----QTRTHLQRELGD--DNILLVKFDEELGGHRSSNNW--- 277
+C + K T YLN +T + R D D + ++F +EL HR N
Sbjct: 424 YCILMRKAIVTPSTVYLNSPTVETTNRVLRHYYDFRDRFMRIQFTDEL--HRGRINATQD 481
Query: 278 ---NDS-YSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAF 333
ND Y++ + R GI +G R Y F F G + + ESSA+
Sbjct: 482 QRVNDELYTRVYRVLRNGIFIGDRHYQFLAF---GNSQMR---------------ESSAY 523
Query: 334 IDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIE 393
+ + T R R + +V Y +RL S T ++ +++ I+
Sbjct: 524 ----FFAAVGDVTCDSIRAWMGDFRHIRNVGKYAARLGQCFSTTRNID----STSVQWIK 575
Query: 394 DEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKEL 453
P +++G + DG I + IS+ L+L TY
Sbjct: 576 SIPDIEENG-YCFSDGVGKISQFWSTRISQRLSLN--TY--------------------- 611
Query: 454 EANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADR 513
P Q R+ KG L + + I +RPS K + +
Sbjct: 612 -----------------PSAFQFRM----GGRKGILTVWPDVKGMDIHVRPSQEKFQTEH 650
Query: 514 DLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSN 573
+ LEV++ S T L+R I +LS G+ + F D+L + L +
Sbjct: 651 --------SRLEVIRCSQYAVAT-LNRQTIPILSALGIEDHVFEDMLADQLASYDKAMED 701
Query: 574 KRNALKVSFNYGGMDYDFTSA--RMILSGI-SLDEPYLQHRLSILMKEEKKSL-QAGKLP 629
A+ + N + T A ++I++G+ EP++ L + KSL + ++
Sbjct: 702 PVAAMSL-LNLYVDENQMTKALSQLIMAGLMKSQEPFVWTMLRLWRTWSIKSLKEKARIV 760
Query: 630 VTESYYLMGTVDPTGILKSN--------------------EVCIILKDGQVSWEKVL--- 666
V + +++G VD TG L+ + ++ + + DG KV+
Sbjct: 761 VEKGAFVLGCVDETGKLRGHYARVKTHPDQRPRLNHSELPQIFLQVPDGPNGLYKVVTGT 820
Query: 667 --VYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMY 724
V RNP LH GD+ +++A V EL + + FP +G R + +GGD DGD Y
Sbjct: 821 CVVGRNPSLHPGDLRIVEAVDVPELRHL----RDVVVFPKSGDRDIPSMCSGGDLDGDDY 876
Query: 725 FVSRNPELLKHFKESERWMSTSKNLSANKRL---IDFSLEELESELFKLFLNTRFCPS-- 779
F+ + L+ +E N A K L D + ++L F L + P+
Sbjct: 877 FIIWDERLVPPPEERS---YPPMNYEAEKSLDPDRDVTADDLR-RFFVLHMKNHSLPTIA 932
Query: 780 NAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPE 839
+A ADC LG +S E + L ++ A+D P K+GI V
Sbjct: 933 HAHLAHADC----------LGVKS--------EVCIELARLHSQAVDYP-KTGIPAVVRR 973
Query: 840 DLKVEKFPCYMRRDESVSFESTSVLGTIYNTV 871
L +++P +M + ++ S +LG +Y+ V
Sbjct: 974 GLIPKQYPHFMEKSTRRTYHSGRILGKLYDKV 1005
>gi|406862357|gb|EKD15408.1| RNA-dependent RNA polymerase [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1193
Score = 96.3 bits (238), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 132/277 (47%), Gaps = 22/277 (7%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P Q+R Y G KG L L+ L + +RPSMIK DG LE+ S
Sbjct: 607 PTCFQIR--YQGA--KGMLSLDDTLEGDQVLMRPSMIKF-------DGSPSFDLELCNAS 655
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALK-VSFNYGGMDY 589
+ YL+R LI ++ GVP+ +FLD+ ++ R ++ NA K +S + G
Sbjct: 656 YKSLPMYLNRQLIKIMEDIGVPDQWFLDLQSQEIERLRKATTSASNAAKFLSSHSIGDRV 715
Query: 590 DFTSARMILSGISLD---EPYLQHRLSILMKEEKKSLQA-GKLPVTESYYLMGTVDPTGI 645
+ L+ +S++ + +L L + + E K+L+ + PV E L G +D TGI
Sbjct: 716 HLSWLIRKLAQMSIEFRTDRFLCDVLELSVMLEVKTLKHRARYPVPEGLTLYGIMDETGI 775
Query: 646 LKSNEVCIILKDGQ-----VSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAI 700
L+ E+ + + V ++VLV R+P LH GD+ +KA V + + + I
Sbjct: 776 LEEGEIYCTYQSQKGKRMVVIQDRVLVTRSPALHPGDVQPVKAVNVPR-DSPLSKLRNCI 834
Query: 701 FFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFK 737
F G R L ++GGD DGD+Y + +P FK
Sbjct: 835 CFSQKGDRDLPSMLSGGDLDGDLYNIIWDPGCQIRFK 871
>gi|242809058|ref|XP_002485290.1| RNA-dependent RNA polymerase, putative [Talaromyces stipitatus ATCC
10500]
gi|218715915|gb|EED15337.1| RNA-dependent RNA polymerase, putative [Talaromyces stipitatus ATCC
10500]
Length = 1207
Score = 95.9 bits (237), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 117/496 (23%), Positives = 209/496 (42%), Gaps = 97/496 (19%)
Query: 257 DNILLVKFDEELGG---HRSSNNWNDSYS-KYNEIAREGILVGLRCYHFFVFKDGGKEEK 312
D + V+F EE G + S+N + + ++ E+ R+G+++ R Y F F +
Sbjct: 447 DYFIRVRFIEESGDPMMYDISSNLDRIFKDRFGEVLRDGVIIADRHYRFLGFSHSSLRSR 506
Query: 313 KKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSL 372
C+F+ + F D Q I + + F H+R S A + +RL
Sbjct: 507 S---------CWFM----AEFHDSEGQLITVNSLISKLGD-FSHIR---SPAKFAARLGQ 549
Query: 373 ILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTY 432
S T+ + R ++RI+D V ++G + +DG G IS+++ +
Sbjct: 550 TFSDTLT-SISVDRDMVKRIDD----------VERNGR--VFSDGCGTISKEVLWR---- 592
Query: 433 VYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLN 492
+Y++ N P + QVR+ + KG L L+
Sbjct: 593 IYRDYPRNAAVR--------------------------PTVFQVRI----SGAKGMLSLD 622
Query: 493 KKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVP 552
+L TI +R SMIK +A+ D +++E+ + YL+ LI +L GV
Sbjct: 623 PRLKGPTICLRDSMIKFRAEAD-------HNIEICGSGIHSLPCYLNAPLIKILEDLGVA 675
Query: 553 EIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARM-----ILSGISLD--- 604
FL++ R + + R + R A ++ + S R+ +L + L+
Sbjct: 676 RDLFLELQREEVQNLRLAIRSPRQAA----SFLDQAHITKSTRLSWLITVLQSMGLNYNQ 731
Query: 605 EPYLQH--RLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIIL------K 656
+ +L+ L ILMK +A ++ V E+ L G +D TG L+ E+ + + +
Sbjct: 732 DKFLKRAVELVILMKLRDLKYRA-RILVPEAVTLYGIMDETGYLQEGEIFVPILNEVTKR 790
Query: 657 DGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAG 716
+ KVL+ R+P H GD+ ++ A V E + F G R L +++G
Sbjct: 791 RNILVQNKVLITRSPAFHPGDVQMVNAVNVPEASPLRKLHN-CVVFSQKGERDLPSQLSG 849
Query: 717 GDFDGDMYFVSRNPEL 732
GD DGD++ + +P
Sbjct: 850 GDLDGDIFNIIYDPRF 865
>gi|260801473|ref|XP_002595620.1| hypothetical protein BRAFLDRAFT_64730 [Branchiostoma floridae]
gi|229280867|gb|EEN51632.1| hypothetical protein BRAFLDRAFT_64730 [Branchiostoma floridae]
Length = 1282
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 94/331 (28%), Positives = 145/331 (43%), Gaps = 59/331 (17%)
Query: 415 TDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLM 474
+DG G IS+ LA K + R+I R E E P
Sbjct: 417 SDGIGKISQSLAQKV-------------NERRAIGRGETEV---------------PSAY 448
Query: 475 QVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPR 534
Q+R Y G VKG + ++ L +++RPSM+K LS Q +E+ TS+ P
Sbjct: 449 QIR--YGG--VKGVVAVDPSLDSDVMEVRPSMMKF-----LSFDQ---QIEICMTSH-PG 495
Query: 535 KTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSA 594
+ YL+R +I +LS GVP+ F + L + + + A + S
Sbjct: 496 RLYLNRQVITILSALGVPDQTFQQLQEAMLQNLSDMLVREDVAFE-SMKRRAQPLGLPLG 554
Query: 595 RMILSGISLD-EPY----LQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSN 649
R+ G+ + EP+ LQ + + E ++ + ++P ++G +D TG L+
Sbjct: 555 RLSRCGLHVTTEPFFRAMLQKMFTCFLGELRRRARI-EIPPEYGRNMLGVLDETGTLEYG 613
Query: 650 EVC------IILKDGQVSWE-KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFF 702
+V I K GQ V+V RNP H GD+ L+A + L V I F
Sbjct: 614 QVFVQYTEDITDKGGQTKVTGDVVVTRNPCFHPGDLRKLRAVDIPSLHHMVD----VIVF 669
Query: 703 PCNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
P GPR +E++GGD DGD +FV+ P L+
Sbjct: 670 PSKGPRPHPNEMSGGDLDGDQFFVTWYPGLI 700
>gi|164429758|ref|XP_964248.2| hypothetical protein NCU02178 [Neurospora crassa OR74A]
gi|157073607|gb|EAA35012.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 1049
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 120/432 (27%), Positives = 177/432 (40%), Gaps = 96/432 (22%)
Query: 329 ESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRIN 388
E+ AF+ Q L+G + F H++ + A Y +RL S T + I
Sbjct: 622 EAGAFM-FCEQSNLTGDMMRAWMGRFSHIKVI---AKYAARLGQCFSTTRLV----PGIP 673
Query: 389 IERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSI 448
RI P +KDG TDG G IS LA K D SI
Sbjct: 674 APRIVTIPDVEKDG---------FCFTDGVGKISPLLA----------KIVAHDW---SI 711
Query: 449 DRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIK 508
D PP Q R+ KG L+ + + IR S K
Sbjct: 712 D-------------------PPPSAYQFRM----GGCKGVLVTWPDVKGMEVHIRKSQEK 748
Query: 509 VKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDAR 568
A+ FN LEVV+ S T L+R +IA+LS GVP+ F+D++ L D
Sbjct: 749 FVAE--------FNGLEVVRCSQFSTAT-LNRQIIAVLSSLGVPDQVFVDMMEQQLSDFN 799
Query: 569 GVFSNKRNALKVSFNYGGMDYDFTS---ARMILSG-ISLDEPYLQHRLSILMKEEKKSL- 623
+K+ A + + +D + + A M+ G + EP+++ L + K+L
Sbjct: 800 AAMEDKQKATAILKTF--IDENHMTPIIAEMLAYGFMGSQEPFVRTLLQLWRSWSIKTLK 857
Query: 624 QAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEKV------------------ 665
+ +L V +S +++G VD TG LK + + +I VS EK+
Sbjct: 858 EKARLNVEKSAFVLGCVDETGTLKGH-MKVIEDWKDVSSEKLPQIFLQIPDDVNGGYRVI 916
Query: 666 ----LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDG 721
+V RNP LH GDI V++A V L + + FP G R + +GGD DG
Sbjct: 917 TGTCVVGRNPSLHPGDIRVVEAVDVPALRHL----RDVVVFPLTGDRDVPSMCSGGDLDG 972
Query: 722 DMYFVSRNPELL 733
D +FV +P L+
Sbjct: 973 DDFFVIWDPLLI 984
>gi|340521639|gb|EGR51873.1| predicted protein [Trichoderma reesei QM6a]
Length = 1161
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 170/708 (24%), Positives = 275/708 (38%), Gaps = 163/708 (23%)
Query: 216 LKWDSGKTHM------YHCHISTKGNCTFKGPYLN----QTRTHLQRELG--DDNILLVK 263
L W + T+M ++C ++ K T L+ +T + R D L V+
Sbjct: 319 LNWAAASTYMPNTRIPHYCVLARKAAVTPTTILLSTPVVETSNRVLRYFNHIQDRFLRVQ 378
Query: 264 FDEELGGHR---SSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSP 320
F EE R S N D + K +GI +G R Y F F G + +
Sbjct: 379 FVEETEFGRMAMSCRNKEDVWKKILRTLYQGIQIGDRHYQFLAF---GSSQLR------- 428
Query: 321 VKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKL 380
+ A+ +I + + R V + VA Y +RL S T ++
Sbjct: 429 --------QCGAYFFCPTDHI----SCDDIRRWMGEVGHIRIVAKYAARLGQCFSTTREM 476
Query: 381 EVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTN 440
+ I + P +++G TDG G IS+ +A + E+ T
Sbjct: 477 R----GLPIPDVRSIPDVERNGYCF---------TDGVGIISDFMA-----QMIMEELTL 518
Query: 441 DDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTI 500
D Y EP Q R+ KG L++ + +
Sbjct: 519 D------------------------VYAEPSAF-QFRM----GGCKGVLVVWPQATKGEV 549
Query: 501 QIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDIL 560
IR S K KA+ +LE++K + T L+R I +L GV + FLDIL
Sbjct: 550 CIRQSQEKFKAE--------VKNLEIIKCAKYSSAT-LNRQTITILECLGVTKKAFLDIL 600
Query: 561 RNAL---DDARGVFSNKRNALKVSFNYGGMDYDFTS---ARMILSGISLD---EPYLQHR 611
+ ++A G +N + + +D + ++ A ++ +G D EP++ +
Sbjct: 601 EEQIRLYEEAMG-----KNDVAIEMLTNCVDENQSTLILAELLQAGFKTDKVQEPFVANL 655
Query: 612 LSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDG------------ 658
LS+ K L + ++PV +S +++G VD T L+ + I +G
Sbjct: 656 LSLWRSWSLKLLKEKARIPVDKSAFVLGCVDETSTLRGH---FIATEGSSDKDISKLPQI 712
Query: 659 --QVSWEKV-----------LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCN 705
QVS K+ +V RNP LH GDI V++A + L K + FP
Sbjct: 713 FLQVSDSKIYNKTHVVKGLCVVGRNPSLHPGDIRVVEAVDIPGLHHL----KDVVVFPST 768
Query: 706 GPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELES 765
G R + + ++GGD DGD +FV P LL E W + N ++ S E L+
Sbjct: 769 GDRPVPNMLSGGDLDGDDFFVIWEPTLL-----PEIWNHPAMNYTSP------SPETLDR 817
Query: 766 ELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDAL 825
E+ L F K + D + L L D + + L L +++ A+
Sbjct: 818 EVNVDDLRDFF----VKYMKNDVLPLIATAHLALAD----RLGPLSKICLHLADLHSQAV 869
Query: 826 DAPKKSGIKVEVPEDL-KVEKFPCYMRRDESVSFESTSVLGTIYNTVK 872
D P K+G E + +++P +M + S+ S LG IYN VK
Sbjct: 870 DYP-KTGQPAEWNAAMHNPQQWPHFMEKKN--SYISPKALGDIYNRVK 914
>gi|145498970|ref|XP_001435471.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124402604|emb|CAK68074.1| unnamed protein product [Paramecium tetraurelia]
Length = 1343
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 119/433 (27%), Positives = 197/433 (45%), Gaps = 62/433 (14%)
Query: 474 MQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQP 533
+Q+R Y G KG L+L++ L +TI +R SMIK + N ++++ N+
Sbjct: 687 IQIR--YEGA--KGLLVLDESLEQKTIVLRRSMIKYNPAKGYP-----NKIQILDF-NKF 736
Query: 534 RKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVS----FNYGGMDY 589
R YL+R +I LL L + A + + + K L++ + Y +DY
Sbjct: 737 RGGYLNRQIIILL--------LTLQVNEKAFQELQDEYLKKIEDLQMKDASIYKYFSVDY 788
Query: 590 --------DFTSARMILSGISLDEPYL-QHRLSILMKEEKKSLQAGK---LPVTESYYLM 637
+ A I +++ L Q LS L +++ LQ K + V ++ ++
Sbjct: 789 CDEQIDLPNIMDALRAYINIGMEDNILCQGVLSKL--KQRGLLQLRKKTSILVEKAARVL 846
Query: 638 GTVDPTGILKSNEV-CIIL---KDGQVSWE----KVLVYRNPGLHFGDIHVLKATYVKEL 689
G +D +L+ NE+ C++ D QV E +VLV RNP LH GDI L A +E+
Sbjct: 847 GVIDEHNLLQPNEIYCLVQDENNDTQVEPENIQGEVLVTRNPCLHPGDIKKLNAISTQEI 906
Query: 690 EDFVGTSK------YAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWM 743
G+ + FP G SL +IAGGD DGD+YF+ + LL +
Sbjct: 907 LKRNGSKNPYSQLINCLVFPACG-NSLPCQIAGGDLDGDLYFICWDNRLLPPVQAKSMVY 965
Query: 744 STSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKS-----LAADCWQAVMDRFLT 798
K + IDF ++ F ++ F N L ++ + + L
Sbjct: 966 DNKKPNQVQYKKIDF---RENNQRFHENVDKNFDTKNMFDFLYFYLNSETLGLIDNSHLA 1022
Query: 799 LGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSF 858
D+S +K A N L L ++ DA+D K +G +V + L + FP YM +++SV++
Sbjct: 1023 WADKS--DKKANDPNCLELAELHSDAVDFVK-TGKQVFLDVKLLSKIFPDYMEKEQSVTY 1079
Query: 859 ESTSVLGTIYNTV 871
ES +++G +Y V
Sbjct: 1080 ESQTIIGKLYRQV 1092
>gi|403414238|emb|CCM00938.1| predicted protein [Fibroporia radiculosa]
Length = 1215
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 141/657 (21%), Positives = 258/657 (39%), Gaps = 114/657 (17%)
Query: 242 YLNQTRTHLQRELGDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIAREGILVGLRCYHF 301
Y+ + L+ ++N L+ +FD EL N + + G+ + R + F
Sbjct: 444 YMANQDSFLRVSFVEENRLMYRFDRELDARDFVNR------RVKHLLLNGLTIAGRHFDF 497
Query: 302 FVFKDGGKEEKKKDPSTSPVKCYFVR-MESSAFIDMGYQYILSG-KTVHEARYMFMHVRT 359
+ +E +FV+ + + I+SG + H+ + R
Sbjct: 498 LAYSQSALKEHA---------VWFVKPFNHTDRRQIDAATIISGLGSFHD---LAFDERL 545
Query: 360 VSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTG 419
+ A Y +R+S + T S +++E E P D ++ TDG G
Sbjct: 546 IYCPARYAARISQAFTATD------SSVSVEAEEVVPIPD-----IWDATHTYSFTDGVG 594
Query: 420 FISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLF 479
IS DLA EL A + S + P QVR
Sbjct: 595 TISPDLAQAI--------------------WDELRAK-----QKRSRHRTKPRAYQVRFM 629
Query: 480 YNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLS 539
KG L ++ +L + + +R SMIK A L +E+ + ++P + YL+
Sbjct: 630 ----GSKGMLSVDYRLENRLVCLRESMIKFDAPNSLF-------IEIARAFDKPGRYYLN 678
Query: 540 RNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYG-GMDYDFTSARMIL 598
R LI LL GVP F + A+ +A+ + ++ ++ +G G + TS + L
Sbjct: 679 RPLIMLLEGLGVPYSTFQALQDAAVQNAQDSVESLSSSARLLEAHGLGTSFRLTSTMLSL 738
Query: 599 SGISL----DEPYLQHRLSILMKEEKKSLQA-GKLPVTESYYLMGTVDPTGILKSNEV-- 651
+ L ++ + Q + + + L+ ++PV + + L+G D G L E+
Sbjct: 739 HRLGLGPLHEDIFWQQMMDFAVNHVLRELKHHARIPVPDGWTLVGVADVHGFLNEGEIFA 798
Query: 652 CIILKDGQVSW---EKVLVYRNPGLHFGDIHVLKATYVK------ELEDFVGTSKYAIFF 702
C+ +D V L+ R+P +H GD+ V+ A E E T + F
Sbjct: 799 CVHPQDSSVPIYLEGPTLISRSPTIHPGDVQVVHAIGPPPPGSPFEKEPLPNT----VVF 854
Query: 703 PCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEE 762
G R L + GGD DGD+Y ++ P + R ++ A K+ +D
Sbjct: 855 SIKGGRPLPSYLGGGDLDGDVYNLTTMPSM-----RPRRTYPPARYDPAPKKFVDHPSTM 909
Query: 763 LESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYY 822
+ F A+ + +D + +L D+S + L+L ++
Sbjct: 910 ADVAEFV-----------AEYIISDTLGIIAINWLITADQSG--LGIFDPDCLKLAQLHS 956
Query: 823 DALDAPKKSGIKVEVPEDLKVEK-------FPCYMRRDESVSFESTSVLGTIYNTVK 872
DA+D P KSGI V + + ++++ P + ++ + +EST +G ++ ++
Sbjct: 957 DAVDYP-KSGIPVALDQIPRLKRKSKPDWNAPETITKESTNWYESTRAIGHLFRAIE 1012
>gi|212537491|ref|XP_002148901.1| RNA-dependent RNA polymerase, putative [Talaromyces marneffei ATCC
18224]
gi|210068643|gb|EEA22734.1| RNA-dependent RNA polymerase, putative [Talaromyces marneffei ATCC
18224]
Length = 1207
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 115/493 (23%), Positives = 207/493 (41%), Gaps = 91/493 (18%)
Query: 257 DNILLVKFDEELGG---HRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKK 313
D + V+F EE G + S+N + + ++ E+ R+G+++ R Y F F +
Sbjct: 449 DQFIRVRFIEESGDPLMYDISSNLDPIFDRFREVLRDGVIIADRHYRFLGFSHSSLRSRS 508
Query: 314 KDPSTSPVKCYFVRMESSAFID-MGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSL 372
C+F+ + F D + ++I K + + F H++ S A +RL
Sbjct: 509 ---------CWFM----AEFHDSVTGEFITVNKLISKLGD-FDHIKAPSKFA---ARLGQ 551
Query: 373 ILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTY 432
S T+ + + ++RI+D V ++G + +DG G IS+++ +
Sbjct: 552 TFSDTLT-SISVDKDMVKRIDD----------VERNGR--VFSDGCGTISKEILWR---- 594
Query: 433 VYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLN 492
+Y++ N P + QVR+ + KG L L+
Sbjct: 595 IYRDYPRN--------------------------AAVRPTVFQVRI----SGAKGMLSLD 624
Query: 493 KKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVP 552
L TI +R SMIK +A+ D N++E+ + YL+ LI +L GVP
Sbjct: 625 PTLKGPTICLRDSMIKFRAEAD-------NNIEICGSGIHSLPCYLNAPLIKILEDLGVP 677
Query: 553 EIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQH-- 610
FL++ R ++ R + ++A V + + + +I S+ Y Q
Sbjct: 678 RDLFLELQREEVESLRQTVRSPQHA-AVFLDQAHISKSTRLSWLITLLQSMGVNYNQDGF 736
Query: 611 -----RLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVS---- 661
L ILMK +A ++ V + L G +D TG LK E+ + + + +
Sbjct: 737 LKRAVELVILMKLRDLKYKA-RILVPDGVTLYGIMDETGYLKEGEIFVPILNEETKRRDI 795
Query: 662 --WEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDF 719
+ VL+ R+P H GD+ + A V E + + + F G R L +++GGD
Sbjct: 796 LVQDDVLITRSPAFHPGDVQLANAVNVPE-DSPLRKLHNCVVFSQKGTRDLPSQLSGGDL 854
Query: 720 DGDMYFVSRNPEL 732
DGD++ + +P
Sbjct: 855 DGDIFNIIYDPRF 867
>gi|74830367|emb|CAI39056.1| RNA-dependent RNA polymerase [Paramecium tetraurelia]
Length = 1367
Score = 95.5 bits (236), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 119/433 (27%), Positives = 197/433 (45%), Gaps = 62/433 (14%)
Query: 474 MQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQP 533
+Q+R Y G KG L+L++ L +TI +R SMIK + N ++++ N+
Sbjct: 711 IQIR--YEGA--KGLLVLDESLEQKTIVLRRSMIKYNPAKGYP-----NKIQILDF-NKF 760
Query: 534 RKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVS----FNYGGMDY 589
R YL+R +I LL L + A + + + K L++ + Y +DY
Sbjct: 761 RGGYLNRQIIILL--------LTLQVNEKAFQELQDEYLKKIEDLQMKDASIYKYFSVDY 812
Query: 590 --------DFTSARMILSGISLDEPYL-QHRLSILMKEEKKSLQAGK---LPVTESYYLM 637
+ A I +++ L Q LS L +++ LQ K + V ++ ++
Sbjct: 813 CDEQIDLPNIMDALRAYINIGMEDNILCQGVLSKL--KQRGLLQLRKKTSILVEKAARVL 870
Query: 638 GTVDPTGILKSNEV-CIIL---KDGQVSWE----KVLVYRNPGLHFGDIHVLKATYVKEL 689
G +D +L+ NE+ C++ D QV E +VLV RNP LH GDI L A +E+
Sbjct: 871 GVIDEHNLLQPNEIYCLVQDENNDTQVEPENIQGEVLVTRNPCLHPGDIKKLNAISTQEI 930
Query: 690 EDFVGTSK------YAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWM 743
G+ + FP G SL +IAGGD DGD+YF+ + LL +
Sbjct: 931 LKRNGSKNPYSQLINCLVFPACG-NSLPCQIAGGDLDGDLYFICWDNRLLPPVQAKSMVY 989
Query: 744 STSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKS-----LAADCWQAVMDRFLT 798
K + IDF ++ F ++ F N L ++ + + L
Sbjct: 990 DNKKPNQVQYKKIDF---RENNQRFHENVDKNFDTKNMFDFLYFYLNSETLGLIDNSHLA 1046
Query: 799 LGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSF 858
D+S +K A N L L ++ DA+D K +G +V + L + FP YM +++SV++
Sbjct: 1047 WADKS--DKKANDPNCLELAELHSDAVDFVK-TGKQVFLDVKLLSKIFPDYMEKEQSVTY 1103
Query: 859 ESTSVLGTIYNTV 871
ES +++G +Y V
Sbjct: 1104 ESQTIIGKLYRQV 1116
>gi|367021614|ref|XP_003660092.1| hypothetical protein MYCTH_2297939 [Myceliophthora thermophila ATCC
42464]
gi|347007359|gb|AEO54847.1| hypothetical protein MYCTH_2297939 [Myceliophthora thermophila ATCC
42464]
Length = 1033
Score = 95.5 bits (236), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 142/559 (25%), Positives = 227/559 (40%), Gaps = 129/559 (23%)
Query: 257 DNILLVKFDEEL--GGHRSSNNWNDS--YSKYNEIAREGILVGLRCYHFFVFKDGGKEEK 312
D+ L V+F +EL G R+ D Y++ + +GI +G + F F + E
Sbjct: 545 DHFLRVQFTDELLDGRIRACEVDRDDELYARVCRVMTQGIRMGKWHWKFLAFGNSQIRES 604
Query: 313 KK----DPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMS 368
+P V C +R MG F H+ +SVA +
Sbjct: 605 AAFFFCEPEDGSVTCDSIRQW------MGN---------------FDHI---TSVAKLAA 640
Query: 369 RLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALK 428
RL S T L S I RI D V ++G TDG G IS L L
Sbjct: 641 RLGQCFSTTRLLHC-ISSPRIARIPD---------VESENG--FCFTDGIGKIS--LPLA 686
Query: 429 CPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGT 488
C + + +DR PP +Q R+ KG
Sbjct: 687 CLV-----------AEDWKLDR-------------------PPSAVQFRM----GGCKGV 712
Query: 489 LLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSY 548
L+ + I IRPS K A+ +N LE+++ S T L+R I +LS
Sbjct: 713 LVQWPNVKGTEIHIRPSQEKFCAE--------YNGLEIIRCSQFSCAT-LNRQTILILSC 763
Query: 549 GGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTS---ARMILSG-ISLD 604
GV + F+D++ + + + ++K A+++ NY +D + T+ A M+ +G +
Sbjct: 764 LGVSDEVFIDMMASQIANFDAAMTDKDTAVELLDNY--VDENLTTTTIASMLRNGFMHTR 821
Query: 605 EPYLQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKS-------------NE 650
EP+++ L + K+L + +L V + +++G VD TG L+ ++
Sbjct: 822 EPFVRTVLQLWRSWSIKALKEKARLVVEQGAFVLGCVDETGTLRGYSRATEGQSNVSRDQ 881
Query: 651 VCIIL-----KDGQVSWEKV----LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIF 701
+ I +D + +++ V +V RNP LH GDI V++A V +L + +
Sbjct: 882 LPQIFFQVPDRDHRHAYKVVTGLCIVGRNPSLHPGDIRVVEAVDVPQLRHL----RDVVV 937
Query: 702 FPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLID--FS 759
FP G R + +GGD DGD +FV +P LL W N SA + I+ S
Sbjct: 938 FPLRGDRDVPSMCSGGDLDGDDFFVIWDPRLLP-----AEWGHPPMNYSAPQPPIESRAS 992
Query: 760 LEELESELFKLFLNTRFCP 778
L + + F LF+ P
Sbjct: 993 LAKSLAFFFVLFMKNDRLP 1011
>gi|291228412|ref|XP_002734181.1| PREDICTED: RNA-dependent RNA polymerase Family family member
(rrf-3)-like [Saccoglossus kowalevskii]
Length = 1491
Score = 95.5 bits (236), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 102/423 (24%), Positives = 190/423 (44%), Gaps = 67/423 (15%)
Query: 475 QVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPR 534
Q+R Y G+ KG + L+ L + I IR SM+K ++ D ++E++ + +P
Sbjct: 576 QIR--YAGS--KGMVALDPSLTGEQIMIRKSMLKFPSEHD--------NIEIMNLT-KPA 622
Query: 535 KTYLSRNLIALLSYGGVPEIFFLDILRNALD---------DARGVFSNKRNALKVSFNYG 585
+ +L+R +I +LS G+ + FL + L+ D + ++R+ + ++F +
Sbjct: 623 RLHLNRQVITILSGLGIEDKVFLKLQHRMLNNLANMFLKEDVAAAWLSRRSQIGINFKH- 681
Query: 586 GMDYDFTSARMILSGISLD-EPYLQHRLSILMKEEKKSLQAGK---LPVTESYYLMGTVD 641
M+ GISL EP+ + L + K L+ LP + +MG +D
Sbjct: 682 ----------MMTCGISLTTEPFFKSLLQAVYKSLLGELRRRARIILPPQFARNMMGVID 731
Query: 642 PTGILKSNEVCIIL--------KDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFV 693
TG L+ +V I K+ V V+V + P H GD+ +A + L +
Sbjct: 732 ETGALQYGQVFIQYSKKLDKPQKEKIVHSGPVVVTKFPCYHPGDVRKFQAVDIPALYHLI 791
Query: 694 GTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANK 753
I FP GPR +E+AG D DGD YFV+ PELL +E+ M +A K
Sbjct: 792 D----CIVFPRQGPRPHPNEMAGSDLDGDEYFVTWLPELLFD-RENHEAMPFP---AAVK 843
Query: 754 RLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKEN 813
+ + +E +++ K + + DC + + L + D+ ++ +
Sbjct: 844 KELTNPVE--VADMIKFV---------TEYIQNDCLGLMANAHLAMADQQSD--GIFSDM 890
Query: 814 MLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKS 873
L + + +A+D K+G + ++ + +P +M + + +++S +LG +Y S
Sbjct: 891 CLNICKLLSEAVDF-AKTGNCPTLDKNQQPNTYPDFMGKQDKTNYKSKHILGKLYRHCWS 949
Query: 874 YEA 876
E+
Sbjct: 950 LES 952
>gi|347830482|emb|CCD46179.1| similar to rna-dependent rna polymerase [Botryotinia fuckeliana]
Length = 1203
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 132/276 (47%), Gaps = 25/276 (9%)
Query: 462 RTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTF 521
R Y P Q+R Y G KG + L+ +LP +++R SMIK +G T
Sbjct: 602 RLPDKYLVKPTCFQIR--YRGA--KGMISLDSRLPGVKLRLRESMIKF-------EGSTS 650
Query: 522 NSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVS 581
N LE+ + +P YL+R I +L GV +F+ + + R + ++ NA +
Sbjct: 651 NDLEICGGAYKPLPMYLNRQFIKILEDLGVEPEYFMRLQAKEVSRLREITASAYNA--ST 708
Query: 582 FNYGGMDYDFTSARMIL---SGISLD---EPYLQHRLSILMKEEKKSLQ-AGKLPVTESY 634
F D ++ S + LD + +L+ L + + E ++L+ ++PV Y
Sbjct: 709 FLQSKRVGDVVLLPQLIEHCSALDLDFRNDLFLRDILEMTVLIELRTLKHKARIPVERGY 768
Query: 635 YLMGTVDPTGILKSNEV-CIILKDGQ---VSWEKVLVYRNPGLHFGDIHVLKATYVKELE 690
+L G +D TGIL+ E+ C ++DG+ + V++ R P LH GDI + A V +
Sbjct: 769 HLHGIMDETGILEEGEIYCCWIEDGKRTTLVGSNVVITRAPALHPGDIQLANAVNVPS-D 827
Query: 691 DFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFV 726
+ + F G R L +++GGD DGD+Y+V
Sbjct: 828 SPLNRLYNCVCFSQKGARDLPSQLSGGDLDGDLYYV 863
>gi|154290300|ref|XP_001545747.1| hypothetical protein BC1G_15659 [Botryotinia fuckeliana B05.10]
Length = 1080
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 132/276 (47%), Gaps = 25/276 (9%)
Query: 462 RTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTF 521
R Y P Q+R Y G KG + L+ +LP +++R SMIK +G T
Sbjct: 469 RLPDKYLVKPTCFQIR--YRGA--KGMISLDSRLPGVQLRLRESMIKF-------EGSTS 517
Query: 522 NSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVS 581
N LE+ + +P YL+R I +L GV +F+ + + R + ++ NA +
Sbjct: 518 NDLEICGGAYKPLPMYLNRQFIKILEDLGVEPEYFMRLQAKEVSRLREITASAYNA--ST 575
Query: 582 FNYGGMDYDFTSARMIL---SGISLD---EPYLQHRLSILMKEEKKSLQ-AGKLPVTESY 634
F D ++ S + LD + +L+ L + + E ++L+ ++PV Y
Sbjct: 576 FLQSKRVGDVVLLPQLIEHCSALDLDFRNDLFLRDILEMTVLIELRTLKHKARIPVERGY 635
Query: 635 YLMGTVDPTGILKSNEV-CIILKDGQ---VSWEKVLVYRNPGLHFGDIHVLKATYVKELE 690
+L G +D TGIL+ E+ C ++DG+ + V++ R P LH GDI + A V +
Sbjct: 636 HLHGIMDETGILEEGEIYCCWIEDGKRTTLVGSNVVITRAPALHPGDIQLANAVNVPS-D 694
Query: 691 DFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFV 726
+ + F G R L +++GGD DGD+Y+V
Sbjct: 695 SPLNRLYNCVCFSQKGARDLPSQLSGGDLDGDLYYV 730
>gi|302819337|ref|XP_002991339.1| hypothetical protein SELMODRAFT_448382 [Selaginella moellendorffii]
gi|300140919|gb|EFJ07637.1| hypothetical protein SELMODRAFT_448382 [Selaginella moellendorffii]
Length = 1134
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 111/437 (25%), Positives = 188/437 (43%), Gaps = 76/437 (17%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P +Q+R Y G KG + ++ + + +RPSM+K ++R L+V+K S
Sbjct: 580 PSALQIR--YAG--YKGVVAVDPTCSTK-LSLRPSMLKFPSER--------TGLDVLKAS 626
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKV--SFNYGGMD 588
Q YL+R I L++ GVP+ F + L + + + A++V S + GG
Sbjct: 627 -QYAPYYLNRQSIILMTTLGVPDEVFERMQNEELKILDEMLRDPQTAIEVLRSSSSGGEV 685
Query: 589 YDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQ------AGKLPVTESYYLMGTVDP 642
+ A + EP+L+ L + +SLQ ++ V + L+G +D
Sbjct: 686 HSIMVAMLQAGYKPAHEPFLRRLL-----DNFRSLQLYLLRTKSRIYVPKGRCLLGCLDE 740
Query: 643 TGILKSNEVCI----------ILKDGQ----------------VSWEKVLVYRNPGLHFG 676
TG+L +V + ++ DG V KV+V +NP LH G
Sbjct: 741 TGVLDYGQVFVQVSPTPGTRRVVDDGLDDARPRRGVTRSESACVVLGKVVVTKNPCLHPG 800
Query: 677 DIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHF 736
D+ VL+A V L + + FP G R +E +G D DGD+YFV+ + L+
Sbjct: 801 DLLVLEAVDVPGLHHMID----CVVFPQRGKRPHPNECSGSDLDGDLYFVTWDKSLVPPV 856
Query: 737 KESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRF 796
+A K +LEE++ + F++ S+ D + +
Sbjct: 857 THEPMDYEPG---TAAKLDHSVTLEEIQ----QFFVD---------SMVHDSLGVISNAH 900
Query: 797 LTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESV 856
L D+ E A L L + A+D K+GI +P DL+ +P +M +
Sbjct: 901 LVHADKELER--AKDPKCLELARLASTAVDF-AKTGIPAVIPVDLRPRDYPDFMENEFKS 957
Query: 857 SFESTSVLGTIYNTVKS 873
++ S SVLG +Y +++S
Sbjct: 958 TYTSQSVLGKLYRSLQS 974
>gi|358369173|dbj|GAA85788.1| RNA-directed RNA polymerase (Sad-1) [Aspergillus kawachii IFO 4308]
Length = 745
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 110/447 (24%), Positives = 187/447 (41%), Gaps = 75/447 (16%)
Query: 468 GEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVV 527
GEPP Q RL KG L ++ PQ I IR S K N LE++
Sbjct: 11 GEPPSAFQFRL----GGCKGMLAVSSDAQPQEIHIRESQNKFPT--------VHNGLEII 58
Query: 528 KTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGM 587
+ S T L+R LI ++S G+P+ F L++ L + A++V Y
Sbjct: 59 RWSQYSMAT-LNRQLILVMSTLGIPDEVFHAKLKSMLRALDEAMESDSRAIEVLKKYVDP 117
Query: 588 DYD-FTSARMILSGISLD-EPYLQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTG 644
+ T ++M+ G EP+ L++ K L + K+ + L+G +D TG
Sbjct: 118 NQTTLTVSQMVSDGFRRSKEPFFTSILALWRTWHIKYLKEKAKIVIDNGTNLLGVMDETG 177
Query: 645 ILKS--------------------NEVCIIL-----KDGQVSWEKV----LVYRNPGLHF 675
ILK E+ + + +G +E + ++ RNP LH
Sbjct: 178 ILKGYFYDKIPKEDASLEQKLAALPEIFLQVPRTSGSEGGAQYEVIEGLCILARNPSLHP 237
Query: 676 GDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKH 735
GDI V++A V EL + + P G R +A +GGD DGD Y V + +L+
Sbjct: 238 GDIRVVRAVNVPELHSL----RDVVVLPQTGDRDIASMCSGGDLDGDDYLVIWDQDLIH- 292
Query: 736 FKESERWMSTSKNLSANKRL---IDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAV 792
+ W ++NK D +++E+ S F +++ P+ A + A W
Sbjct: 293 ----KDWFLDPMRYTSNKAQDLDHDVTVDEVTS-FFVMYMKNDSLPTIAHAHVA--WADQ 345
Query: 793 MDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRR 852
+ E +E +RL ++ DA+D K+G + +L+ ++P +M +
Sbjct: 346 L------------EDGVNEEKCIRLAQLHSDAVDY-NKTGRPAIMTRNLQPRRWPHFMEK 392
Query: 853 DESVS--FESTSVLGTIYNTVKSYEAV 877
+ + S +LG +Y+ V+ + V
Sbjct: 393 PKPKDQIYCSRKILGQLYDAVERVDFV 419
>gi|147853646|emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]
Length = 654
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 132/557 (23%), Positives = 218/557 (39%), Gaps = 119/557 (21%)
Query: 344 GKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGN 403
G T E R + +VA Y +RL S + K + ++ IE I D
Sbjct: 7 GLTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSS-KETLKVAKDEIENIPDIE------- 58
Query: 404 VVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVART 463
++K + +DG G IS LA + KC ST
Sbjct: 59 -IHKXRTTYVFSDGIGKISPQLAHRVAI-----KCGCKSST------------------- 93
Query: 464 ESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNS 523
P Q+R Y G KG + ++ + + +R SM K ++D +
Sbjct: 94 -------PSAFQIR--YGG--YKGVVAVDPT-SSRKLSLRKSMFKYESDN--------TN 133
Query: 524 LEVVKTSN-QPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSF 582
L+V+ S QP ++L+R LI LLS GV + F R A+D + + A +
Sbjct: 134 LDVLAWSKYQP--SFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVAAQEALE 191
Query: 583 NYGGMDYDFTSARMILSGISLD-EPYLQHRLSILMKEEKKSLQA-GKLPVTESYYLMGTV 640
+ M++ G D EP+L L + L+ ++ V +MG +
Sbjct: 192 LMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCL 251
Query: 641 DPTGILKSNEVCIIL---------------------KDGQVSWEKVLVYRNPGLHFGDIH 679
D T L+ EV + + D + K++V +NP LH GD+
Sbjct: 252 DETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGSHHDNFILEGKIVVAKNPCLHPGDVR 311
Query: 680 VLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKES 739
VL A V L V + FP G R +E +G D DGD+YFV + +L+
Sbjct: 312 VLXAVNVPTLHHMVD----CVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIP----- 362
Query: 740 ERWMSTSKNLSANKRLIDFS---LEELESELFKLFLNTRF-CPSNAKSLAADCWQAVMDR 795
+D++ +E+E +N +NA ++ AD
Sbjct: 363 ----------PQQINPMDYTPAPTKEVEEYFTNYIVNDSLGIIANAHTVFAD-------- 404
Query: 796 FLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDES 855
E A + L ++ A+D P K+G+ E+P +L+V+++P +M + +
Sbjct: 405 --------KEYDKAYCDPCTELAKLFSIAVDFP-KTGVPAEIPRNLRVKEYPDFMEKADK 455
Query: 856 VSFESTSVLGTIYNTVK 872
++ES SV+G ++ VK
Sbjct: 456 PTYESQSVIGKLFREVK 472
>gi|336467963|gb|EGO56126.1| hypothetical protein NEUTE1DRAFT_64449 [Neurospora tetrasperma FGSC
2508]
gi|350289794|gb|EGZ71019.1| RdRP-domain-containing protein [Neurospora tetrasperma FGSC 2509]
Length = 1350
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 148/647 (22%), Positives = 265/647 (40%), Gaps = 116/647 (17%)
Query: 213 RMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGD--DNILLVKFDEELGG 270
R++ + G T +Y + T GP L + + + R+ + D+ L V+F EE G
Sbjct: 400 RLNEEIPPGLTKIYRA-LVTPTRIELHGPEL-EAKNRILRKFPEHQDHFLRVQFGEEDGQ 457
Query: 271 ---HRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVR 327
S+ + + Y ++ ++ GI VG R Y F F S S ++ + +
Sbjct: 458 DLFFNSAVSMDAIYQRFKDVLTNGISVGGRVYRFLGF------------SHSSLRAHSLW 505
Query: 328 MESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKT-MKLEVDFSR 386
+ ++ FI G + + E F +++ S A +R+ S+T + +D
Sbjct: 506 L-AAPFIYNGRLQL--ANNIIEGLGDFGNIK---SPARRAARIGQAFSETPYSVSLDTHG 559
Query: 387 INIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTER 446
I++ R D ++ + +DG G IS+
Sbjct: 560 IDVIRQRDIKRNER------------VFSDGVGIISQG---------------------- 585
Query: 447 SIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSM 506
LE ++ ++ + P +QVR KG L L+ +LP + I IR SM
Sbjct: 586 -----ALEVIHREIPESKGY----PNCLQVRW----AGAKGMLALDARLPGRQICIRDSM 632
Query: 507 IKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDD 566
K ++ RD LE+ +++P L+R +I +L G P +F+ + L
Sbjct: 633 EKFRS-RDE------EHLEICDMASKPIPLMLNRQMIKILEDMGAPAKWFMKLQEKELQR 685
Query: 567 ARGVFSNKRN-ALKVSFNYGGMDYDFTSARMILSGISLD---EPYLQHRL-SILMKEEKK 621
R + N +N A + G + L +++D + +L+ + +++++E +
Sbjct: 686 LRAITDNVQNVATFLKLQCVGDSVHLSQFLKDLDKMNIDYRRDQFLRGIVEAVVLRELRL 745
Query: 622 SLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILK------DGQVSWEKVLVYRNPGLHF 675
++PV L G +D TG+L+ EV + + G + V+V R+P LH
Sbjct: 746 LKHKARIPVPYGVTLFGVMDETGLLREGEVYVTFETVDGRFKGPPTAGPVVVTRSPALHP 805
Query: 676 GDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKH 735
GDI + + + K I F NG R L +++GGD DGD + V +
Sbjct: 806 GDIQI-AYNVIPPAGHPLRELKNCIVFSQNGERDLPSQLSGGDLDGDTFNVIWD------ 858
Query: 736 FKESERWMSTSKNLSAN--KRLIDFSL-EELESELFKLFLNTRFCPSNAKSLAADCWQAV 792
+R +ST + A R+ L E+ES+ F + + AD +
Sbjct: 859 ----QRIVSTLRTFPAADYPRVEPLKLNREVESKDMADFF--------VEFMKADHLGVI 906
Query: 793 MDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPE 839
R + L DE E + + L+L ++ A+D KSGI V++ E
Sbjct: 907 AVRHMILADERDE--GTLDADCLKLAALHSKAVDF-SKSGIHVDITE 950
>gi|350629963|gb|EHA18336.1| hypothetical protein ASPNIDRAFT_176277 [Aspergillus niger ATCC
1015]
Length = 1152
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 118/517 (22%), Positives = 209/517 (40%), Gaps = 91/517 (17%)
Query: 227 HCHISTKGNCTFKGPYLNQTRTHLQRELGD--DNILLVKFDEELGGHRSSN---NWNDSY 281
H + T T GP L + R + R + D + V+F +E G N +++D +
Sbjct: 399 HKVMITPTRVTLHGPEL-EPRNRILRRFPNHHDYFIRVQFCDENGQDLHFNSRIHYDDVF 457
Query: 282 SKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYI 341
S++ + GI + R Y F + S S ++ + SS F+D Q+
Sbjct: 458 SRFKHVLTHGIQIAGRTYSFLGW------------SHSSLRSHAF---SSPFVDESGQF- 501
Query: 342 LSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKD 401
+T + S A +R+ + T + S +IE E KD
Sbjct: 502 ---QTHFSIIKALGDFSKIQSPARCAARIGQAFTDT-PYAISLSEYDIEVSEMADVTSKD 557
Query: 402 GNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVA 461
G V+ +DG G +S ++A ++ ++K
Sbjct: 558 GKRVF--------SDGIGTLSWNVAKSIWHHIPEKKGF---------------------- 587
Query: 462 RTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTF 521
P QVRL KG L ++ +L +++RPSMIK + D
Sbjct: 588 ---------PTCFQVRL----GGAKGMLAVDGRLSGSQVKVRPSMIKFEGD--------M 626
Query: 522 NSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVS 581
LE+ + +P L+R +I +L G P+ +FL + AL R V ++ N+ +V
Sbjct: 627 KDLEICAMAAKPMVLVLNRQMIKILEDMGTPDDWFLTLQEAALTKLRSVTASAHNS-EVF 685
Query: 582 FNYGGMDYDFTSARMILSGISLD-----EPYLQHRL-SILMKEEKKSLQAGKLPVTESYY 635
+ R+ D EP+++ + ++++KE + ++PV +
Sbjct: 686 IKRQAVGDTIGLYRLFRHCHQRDLDYRKEPFIRSVVEAVVLKELRLLKHKARIPVFKGIT 745
Query: 636 LMGTVDPTGILKSNEVCIILK--DGQVSWEK----VLVYRNPGLHFGDIHVLKATYVKEL 689
L G +D TG+L++++V + + +G+ + VLV R+P LH GDI + +
Sbjct: 746 LFGVMDETGLLEADQVYVTYETIEGRHAPPPNAGMVLVTRSPALHDGDIQFAQNVIPPDN 805
Query: 690 EDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFV 726
+ I F G R L +++GGD DGD++ V
Sbjct: 806 HPLAELTN-CIVFSSKGYRDLPSQLSGGDLDGDIFNV 841
>gi|212544602|ref|XP_002152455.1| RNA-directed RNA polymerase (Sad-1), putative [Talaromyces marneffei
ATCC 18224]
gi|210065424|gb|EEA19518.1| RNA-directed RNA polymerase (Sad-1), putative [Talaromyces marneffei
ATCC 18224]
Length = 1359
Score = 94.7 bits (234), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 180/782 (23%), Positives = 304/782 (38%), Gaps = 179/782 (22%)
Query: 138 ISHAM--RHRASIPQYVA-LGELEFRKAFLILSYIGENSLEEVITADEIRGMRDLQMARF 194
ISH + AS P++V L ++E RKA +L ++ + ++ I D M F
Sbjct: 447 ISHGYISEYTASKPEFVQRLKDMEERKALTLLEHV---ATDKKIYWD--------AMKIF 495
Query: 195 ESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTK----GNCTFKGPYLNQTRTHL 250
+ + + R+NI Y C I T + P + T L
Sbjct: 496 DILFPKGVTRRNIPS----------------YCCMIRTATVTPSTIYWNTPSMEITNRVL 539
Query: 251 QR-ELGDDNILLVKF-DEELGGHRSS---NNWNDSYSKYNEIAREGILVGLRCYHFFVFK 305
+R D L V+F DE+ G +S + ++ +++ GI++G R Y F F
Sbjct: 540 RRYSEHADRFLRVRFKDEKFEGRINSTHHDTMDEIFARIKRTMSNGIILGDRKYEFLAFG 599
Query: 306 DGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVAN 365
+ E YF E+ T R + ++A
Sbjct: 600 NSQFREHG---------AYFFASEAHV-------------TAANIRAWMGEFSEIRNIAK 637
Query: 366 YMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDL 425
Y +RL S T ++ + ++RI D V + G +DG G IS L
Sbjct: 638 YAARLGQCFSTTRA--INTCTVELKRIPD----------VERGGYTF--SDGVGRISRFL 683
Query: 426 ALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAV 485
A + ++EL+ D EPP Q RL
Sbjct: 684 A--------------------QMTQQELKIKTPD--------KEPPSAYQFRL----GGC 711
Query: 486 KGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIAL 545
KG L+L+ + IQIRPS K A+ LE+++ S T L+R LIA+
Sbjct: 712 KGMLVLSDVPRGREIQIRPSQEKFPANH--------QGLEIIRWSQFSSAT-LNRQLIAV 762
Query: 546 LSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLD- 604
LS GV + F + LR + + + R A+++ Y D ++LS + D
Sbjct: 763 LSSLGVSDEVFHEKLRRMVSNLEEATRDDRAAMRLLQKY----IDPNEMTLVLSKMVSDG 818
Query: 605 -----EPYLQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDG 658
+P++ +++ K L + K+ + + L+G +D T L+ + K
Sbjct: 819 FLQSRDPFVTSIITLWKAWSIKYLKEKAKITIEDGACLLGVLDETATLQGFSYEKV-KKP 877
Query: 659 QVSWEKVL---------VYR-----------------NPGLHFGDIHVLKATYVKELEDF 692
+S E L VYR NP LH GDI V++A EL
Sbjct: 878 HLSRESKLDALPEIFLQVYRADEKKYCVIKGVCILARNPSLHPGDIRVVRAVDRPELAHL 937
Query: 693 VGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSAN 752
K + P G R +A +GGD DGD Y V + +L+ + +W + +
Sbjct: 938 ----KDVVVLPQLGDRDIASMCSGGDLDGDDYLVIWDKDLVPN-----QWFRAPMDYAPI 988
Query: 753 KRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKE 812
K ++ +++ F+N + +++ A A D FL G ES +
Sbjct: 989 KG-VNLDRSVTVNDITTFFVN--YMKNDSLPRIAHAHLAWSD-FLMNGVESPK------- 1037
Query: 813 NMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRD---ESVSFESTSVLGTIYN 869
+RL ++ +A+D K+G +P DL+ ++P +M ++ + +++S +LG +Y+
Sbjct: 1038 -CIRLAQLHSNAVDY-NKTGEPAYLPRDLRPRRWPHFMEKNYKPKDQTYQSKKILGQLYD 1095
Query: 870 TV 871
V
Sbjct: 1096 AV 1097
>gi|115436872|ref|XP_001217666.1| predicted protein [Aspergillus terreus NIH2624]
gi|114188481|gb|EAU30181.1| predicted protein [Aspergillus terreus NIH2624]
Length = 1039
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 153/679 (22%), Positives = 269/679 (39%), Gaps = 131/679 (19%)
Query: 201 KLGRKNISQEDRRMSLKWDSGKTHMYHCHIS-TKGNCTFKGPYLN-QTRTHLQRELGDDN 258
+L R+ + + S+ D H+ +S + TF GP Q R +
Sbjct: 362 RLDREAKMERTTQKSVSADLSSDHVLIHRVSVSPARITFHGPEREPQNRVIRKFPRHHAY 421
Query: 259 ILLVKFDEELGG---HRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKD 315
+ V+F +E G +++ + ++ + GI + R Y F F
Sbjct: 422 FIRVQFCDERGSDLFFNPKHDYEQIFQRFRTVLTLGIQIAGRTYTFLGF----------- 470
Query: 316 PSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILS 375
S S ++ + V SS FID G + + ++ +A F ++S A +R+ +
Sbjct: 471 -SHSSLRSHSVWF-SSPFID-GDGSLQTSSSIIKALGNF---SGITSPARCAARIGQAFT 524
Query: 376 KTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYK 435
+T + + +E IED + E+ + +DG G IS ++ + + +
Sbjct: 525 ET-PFTLPVQNVVVEYIED----------ITSSDESRVFSDGIGTISLEVVERIWKGIPQ 573
Query: 436 EKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKL 495
+K T P QVRL KG L L+ +L
Sbjct: 574 KKGT-------------------------------PTCFQVRL----GGAKGMLSLDSRL 598
Query: 496 PPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIF 555
I+IRPSM+K D D+ D L + +++P L+R ++ +L GVP+ +
Sbjct: 599 EGSVIRIRPSMVKFSTD-DMRD------LGICGMASEPYPLVLNRQIVKILEDIGVPDDW 651
Query: 556 FLDILRNALDDARGVFSNKRNAL------KVSFNYG---------GMDYDFTSARMILSG 600
F + + L + + S+ K++ + G MD D+
Sbjct: 652 FFGLQNDRLRQLQLISSSADKTATFLKDAKIADSIGLYKLFRWCYWMDLDYR-------- 703
Query: 601 ISLDEPYLQHRLSILMKEEKKSLQ-AGKLPVTESYYLMGTVDPTGILKSNEVCII----- 654
++P+L+ + ++ E + L+ ++PV + L G +D TG LK NEV I
Sbjct: 704 ---EDPFLRSIVEAMILRELRLLKHKSRIPVPQGMTLYGIIDETGYLKENEVFITFDTIS 760
Query: 655 -LKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADE 713
L VLV R+P L+ GDI V + V + + K I F G R L +
Sbjct: 761 GLYAAPPGPGPVLVTRSPALYDGDIQVAR-NVVPPPDHPLARHKNCIIFSQQGARDLPSQ 819
Query: 714 IAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSAN-KRLIDFSLEELESELFKLFL 772
++GGD DGD+Y V +P + K + TS AN R++ + + + +
Sbjct: 820 LSGGDLDGDLYHVIWDPIVAK--------VHTSP--PANYARVVPHDIGRVVTTKDMAYF 869
Query: 773 NTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSG 832
F + DC + R + L D+ E A + L ++ A+D KSG
Sbjct: 870 FVEF-------MKTDCVGIIATRHMILADQEPEGTHASGCKL--LAELHSTAVDY-SKSG 919
Query: 833 IKVEVPEDLKVEKF-PCYM 850
+ V++ + +F P +M
Sbjct: 920 VPVDMAKIPSTGRFRPDFM 938
>gi|391331492|ref|XP_003740179.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Metaseiulus
occidentalis]
Length = 1286
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 111/446 (24%), Positives = 191/446 (42%), Gaps = 70/446 (15%)
Query: 457 FSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLS 516
S+V + H P +Q+R Y G KG + L+ L + + +R SM+K + + +
Sbjct: 510 LSEVWGSLPHTISQPSALQIR--YRGC--KGMVCLDPSLEGRQLVLRKSMVKFECNSN-- 563
Query: 517 DGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRN 576
LEV+K S P +L+R IA+L + GV FL + + + +
Sbjct: 564 -----RKLEVIKWS-APMNMFLNRPFIAILEHHGVKIDVFLRLELEMILQIADSLVCEAS 617
Query: 577 ALKVSFNYGGMDYDFTSARMILSGISL-DEPYLQHRLSILMKEEKKSLQAGK---LPVTE 632
AL+V ++ F + +G L +P+ L L+K SL+ +PV E
Sbjct: 618 ALRVLTSFVKTPIPFYG--LAETGWQLVQDPFFTQMLFDLLKTSLMSLKEKANIAIPVNE 675
Query: 633 SYYLMGTVDPTGILKSNEVCIILKDG-----QVSWEK-------VLVYRNPGLHFGDIHV 680
++G VD TG+L+ +V I + Q+S + V+V + P LH GD+
Sbjct: 676 GRNMLGVVDETGLLEYGQVFIQFTEMPSAPFQISQARTRVVDADVVVTKCPCLHPGDVRR 735
Query: 681 LKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKES- 739
L+A + EL + I FP G E++G D DGD Y +L+ F+E+
Sbjct: 736 LRAVDIPELHHV----RDCIVFPAKGKAPHPFEMSGSDLDGDEYICIWKEDLI--FEENV 789
Query: 740 ERWMSTSKNLSANK------RLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVM 793
E ++ K L K + F + +++ + N W
Sbjct: 790 EPYLYDDKPLGVVKPYQRPVHEVSFLCSYIANDMIGIISNAHL-----------AW---- 834
Query: 794 DRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRR- 852
A+++ + + L L++ ALD K+G V++ + K E+FP +M +
Sbjct: 835 ----------ADQRGLISDECLALVDKASKALDF-AKTGHSVDLHPNEKPERFPDFMEKG 883
Query: 853 DESVSFESTSVLGTIYNTVKSYEAVD 878
D S++S LG +Y TV+ +V+
Sbjct: 884 DHKHSYQSNKALGILYRTVRQIMSVN 909
>gi|340505285|gb|EGR31631.1| RNA-dependent rna polymerase, putative [Ichthyophthirius
multifiliis]
Length = 592
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 113/415 (27%), Positives = 191/415 (46%), Gaps = 57/415 (13%)
Query: 486 KGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIAL 545
KG L+ K + TI +R SM K L++G ++++ N+ R YL+R +I L
Sbjct: 135 KGVLMQMKFIEKNTIILRNSMKKFDV---LNEGDKL-YIDILDM-NKYRNGYLNRQVIIL 189
Query: 546 LSYGGVPEIFFLDILRNALD--DARGVF-SNKRNALKVSFNYGGMDYDFTSARMI--LSG 600
L G+ + F D+ L + G +N N V F ++ + I L
Sbjct: 190 LKSLGIQDKIFRDLQNEFLQMLEKEGFKDANFYNLFNVDFEENLVEKNIEKLDRITVLLK 249
Query: 601 ISLDE-------PYLQHRLSILMKEEKKSLQAG-KLPVTESYYLMGTVDPTGILKSNEV- 651
DE P++ L+ L L+ + V +S L+G +D +L+ N+V
Sbjct: 250 KMYDEQLYRKKDPFIDGVLNSLKYRGYYILKKKCNIYVEKSARLLGILDEFNLLEENQVY 309
Query: 652 CIILKDGQVSWE---KVLVYRNPGLHFGDIHVLKATYVKELE--DFVGTSKYAIFFPCNG 706
KDG++ E KV+V +NP LH GDI +L A K + +F+ K + FP G
Sbjct: 310 ANYSKDGELFQEIEGKVIVVKNPCLHPGDIRILNAVSTKNDKKYNFLKEYKNVLIFPKKG 369
Query: 707 PRSLADEIAGGDFDGDMYFVS------RNPELLKHFKESERWMSTSKNLSA---NKRLID 757
+A +IAG D DGD YF+ N E++ + E + +NL +++++D
Sbjct: 370 KIPIAAQIAGSDLDGDQYFICWDERLIPNKEVIPFDYDQENNKNIQQNLQNQINDQQMLD 429
Query: 758 FSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRL 817
F ++ F+N C + K + + L + D+S+ A+ ++L
Sbjct: 430 FFID---------FIN---CENLGK---------IDNSHLAIADQSSF--FALDFRCIQL 466
Query: 818 INIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVK 872
++ A+D K +G+ VP +L+ ++FP YM + + +ES SVLG +Y VK
Sbjct: 467 AKLHAQAVDYAK-TGVSPYVPLNLQSKQFPDYMEKSDKNQYESKSVLGYLYRQVK 520
>gi|396482889|ref|XP_003841572.1| similar to rna-dependent rna polymerase [Leptosphaeria maculans
JN3]
gi|312218147|emb|CBX98093.1| similar to rna-dependent rna polymerase [Leptosphaeria maculans
JN3]
Length = 1248
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 139/583 (23%), Positives = 225/583 (38%), Gaps = 120/583 (20%)
Query: 192 ARFESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHIS-------TKGNCTFKGP--- 241
++F E + L ++I R +D + H H++ T +GP
Sbjct: 404 SQFTIEAFVALLNESIQDSKERELTGYDLSRKQRKHNHLALTYKATITPTGMLLRGPDWD 463
Query: 242 --------YLNQTRTHLQRELGDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIAREGIL 293
Y T ++ D++ L V FD R Y ++ + R GI
Sbjct: 464 VSNRVLRKYGKHTECFMRVFFADEDGLSVFFDPRASQDRV-------YERFRGVLRNGIT 516
Query: 294 VGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYM 353
V R + F F S + +F+ + FI G + + + E
Sbjct: 517 VAGRRFDFLGFSHA---------SLRSHQAWFM----TPFIKDGIS--ICARDIIEDLGD 561
Query: 354 FMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALI 413
F H+R + A +R+ S T+ FS R+ D + V ++G
Sbjct: 562 FSHIRCSARCA---ARIGQAFSDTI-----FS----VRVPDSAYVTESKVDVKRNGRYF- 608
Query: 414 HTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLL 473
+DG G IS +L K N ER R P +
Sbjct: 609 -SDGCGTISLELM---------RKVWNALPPERREQR--------------------PTV 638
Query: 474 MQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQP 533
+Q+R Y G KG L L+ L + + +R SM K A D LE+ + +P
Sbjct: 639 LQIR--YRGA--KGVLSLDTSLVGEQLHVRQSMTKYIAKEGWKD------LELCGAAYKP 688
Query: 534 RKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTS 593
+L+ I +L GVPE F I A+D + + + NA SF ++Y +S
Sbjct: 689 LTVFLNHQFIKILEDLGVPERNFKAIQNEAVDTLKLITEHPINA--ASF----LEYSHSS 742
Query: 594 --AR-------MILSGISLD-EPYLQHRLSILMKEEKKSLQ-AGKLPVTESYYLMGTVDP 642
AR M G+S + +L + + +SL+ ++P+++ Y L G +D
Sbjct: 743 VYARTPRLFELMHQIGLSFHADRFLTDIVEVAAMSNLRSLKYRARIPISQGYLLYGIMDE 802
Query: 643 TGILKSNEVCIILKD----GQVS-----WEKVLVYRNPGLHFGDIHVLKATYVKELEDFV 693
TGILK EV + K G S ++V++ R P LH GD+ ++KA V E
Sbjct: 803 TGILKEGEVYVATKSHDAIGHKSRKILIGDRVIITRAPALHPGDVQIVKAVDVPEYSPLR 862
Query: 694 GTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHF 736
+ F G R L +++GGD DGD++ + + L+ F
Sbjct: 863 ALHN-CVVFSQQGARDLPSQLSGGDLDGDLFHIIYDSRLIPDF 904
>gi|326471540|gb|EGD95549.1| RNA-directed RNA polymerase [Trichophyton tonsurans CBS 112818]
Length = 1605
Score = 93.6 bits (231), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 149/657 (22%), Positives = 245/657 (37%), Gaps = 137/657 (20%)
Query: 257 DNILLVKFDEELGGHRSSNNWNDS----YSKYNEIAREGILVGLRCYHFFVFKDGGKEEK 312
D L V+F +E R ++ +N+ +++ GI VG R Y F F +
Sbjct: 648 DKFLRVRFTDEKYEGRINSTYNNCMDEVFTRVKRTMTNGITVGDRHYEFLAFGN------ 701
Query: 313 KKDPSTSPVKCYFVRMESSAFIDMGYQYI--LSGKTVHEARYMFMHVRTVSSVANYMSRL 370
S F + G + L T R H + VA + +RL
Sbjct: 702 ------------------SQFREHGAYFFASLPNLTAANIRAWMGHFSDIKIVAKHAARL 743
Query: 371 SLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCP 430
S T V + + I++ V ++G I +DG G IS+ LA
Sbjct: 744 GRCFSTTRA--VTGCPVTVREIDE----------VERNG--YIFSDGVGRISKFLAQMIM 789
Query: 431 TYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLL 490
T + ++ EPP + Q RL KG L
Sbjct: 790 TEF----------------------------KLQTPSEEPPSVFQFRL----GGCKGILT 817
Query: 491 LNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGG 550
++ + + + IR S K A N LE+++ S Q +L+R LI +LS G
Sbjct: 818 VSPEAQRREVHIRKSQYKFAA--------IHNGLEIIRWS-QFAAAHLNRQLIVVLSALG 868
Query: 551 VPEIFFLDILRNALDDARGVFSNKRNALK-VSFNYGGMDYDFTSARMILSGISLD-EPYL 608
V + F+ LR L+D +++ A+ + A+M+ G +P++
Sbjct: 869 VSDEIFIQKLRLMLEDMEQAMTSETKAMSMLQKRVDPNQMTLILAQMVHDGFQGSCDPFV 928
Query: 609 QHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKS------------------- 648
+ L + + K L + K+ + + L G +D T LK
Sbjct: 929 KSLLELWRAWQIKYLKEKAKVFIDQGACLFGCLDETATLKGYHEKKRPSIEATYEERLEY 988
Query: 649 -NEVCIILKDGQ------VSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIF 701
E+ + + D + V ++ RNP LH GDI V++A V L K I
Sbjct: 989 LPEIFVQVFDNEEEKKYRVIEGPCILARNPSLHPGDIRVVRAVDVPALHHL----KDVIV 1044
Query: 702 FPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLE 761
FP G R + +GGD DGD Y V + +L+ K+ R +A D ++
Sbjct: 1045 FPQTGDRDVPSTCSGGDLDGDDYIVIWDQDLVPLPKDWFREPMDYTASNAQSLTRDVTVN 1104
Query: 762 ELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIY 821
++ S F ++ P A + L D E E ++L ++
Sbjct: 1105 DITS-FFVTYMKNDRLPQIAHA------------HLAFAD--YLEDGVNDERCIQLAQLH 1149
Query: 822 YDALDAPKKSGIKVEVPEDLKVEKFPCYMRRD---ESVSFESTSVLGTIYNTVKSYE 875
A+D KSGI + DL K+P +M + + ++S +LG IY+ V+ E
Sbjct: 1150 SAAVDY-NKSGIPANMTRDLVPRKWPHFMEKKYKPKEAQYQSKKILGQIYDIVERVE 1205
>gi|348680026|gb|EGZ19842.1| hypothetical protein PHYSODRAFT_558487 [Phytophthora sojae]
Length = 2706
Score = 93.6 bits (231), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 138/566 (24%), Positives = 233/566 (41%), Gaps = 85/566 (15%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQ-----TIQIRPSMIKVKADRDLSDGQTFNSLE 525
P Q+RL KG L+++ + P+ +I +R SM K ++ + LE
Sbjct: 1295 PSAFQIRL----GGAKGVLVVSDQDNPEVTREESILLRESMSKFASNHTM--------LE 1342
Query: 526 VVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNA---LKVSF 582
+V + + + YL+R + +LS G+ E +++ L + R + ++ A LK
Sbjct: 1343 IVACAGKS-EAYLTRQSVLILSDLGINEDVLMEMQEQFLSELRTLIASDDGAYFELKAVL 1401
Query: 583 NYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDP 642
+ + R + I DE +I ++ ++P+ + LMG D
Sbjct: 1402 PPKVIWWIDVLTRKLGVKILDDEFLSSLARTIYHYRLANTVMRARIPIAQGRTLMGVADF 1461
Query: 643 TGILKSNEVCIILK--------DGQVSWEKV--LVYRNPGLHFGDIHVLK--ATYVKELE 690
TG L EV + D V+ ++V V+R+P H GDI VL+ A ++L
Sbjct: 1462 TGTLDYGEVFVQYSVTEEETGADRYVTLDEVDVAVHRSPCHHPGDIRVLRCRADVPRQLR 1521
Query: 691 DFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLS 750
K I FPC GPR DE GGD DGDM+ V + L+ + M+ +
Sbjct: 1522 QL----KDCIVFPCQGPRPHPDECTGGDLDGDMFVVIWDKRLIPSRTQVHEPMAFDEENE 1577
Query: 751 ANK--RLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKA 808
+ R +F + L +++ S+ D + L L D S E
Sbjct: 1578 GDTSPRGGEFYQSTDDDGLIDFYVH---------SIQDDILGVASNAHLALCDSSHE--G 1626
Query: 809 AMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIY 868
++ E+ L I +D+ +S +E+ L + +P +M+ E S+ S VLG ++
Sbjct: 1627 SLDESAKALARICSKQVDS-LRSEKDLEIVRSLAPKNYPDFMQNKEKPSYPSKKVLGKMF 1685
Query: 869 NTVKSYEAVDRSVTE-IWKLPCFDDGVPEACMTKW----KGYYDQYRWEMKEAI--DKCT 921
K+ D ++T+ + ++P DD A T + K Y QY+ ++ +
Sbjct: 1686 RRCKAI--FDTTMTKGVTQMPVRDDHFLTAGYTDYVDHAKMLYRQYKLRLRALLLMSGAQ 1743
Query: 922 VEREEAAELVI--------------EKYKQILYGA-----AEFEQSTRTLE--EIYNEAL 960
E E A +++ E+ K + Y A+F T TL E A
Sbjct: 1744 TEAELATGMIVEPPSVYKADYFRFGEQCKDVFYELQTAFRAQFNGDTSTLASGEELKLAS 1803
Query: 961 AIYNITYDLA-ASRRQVSYCSFAWRV 985
A Y + YD + AS R + SF W V
Sbjct: 1804 ACYFVAYDDSDASTRSL---SFTWIV 1826
>gi|302505092|ref|XP_003014767.1| hypothetical protein ARB_07328 [Arthroderma benhamiae CBS 112371]
gi|291178073|gb|EFE33864.1| hypothetical protein ARB_07328 [Arthroderma benhamiae CBS 112371]
Length = 1296
Score = 93.2 bits (230), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 149/657 (22%), Positives = 246/657 (37%), Gaps = 137/657 (20%)
Query: 257 DNILLVKFDEELGGHRSSNNWNDS----YSKYNEIAREGILVGLRCYHFFVFKDGGKEEK 312
D L V+F +E R ++ +N+ +++ GI VG R Y F F +
Sbjct: 338 DRFLRVRFTDEKYEGRINSTYNNCMDEVFTRVKRTMTNGITVGDRHYEFLAFGN------ 391
Query: 313 KKDPSTSPVKCYFVRMESSAFIDMGYQYI--LSGKTVHEARYMFMHVRTVSSVANYMSRL 370
S F + G + L T R H + VA + +RL
Sbjct: 392 ------------------SQFREHGAYFFASLPNLTAANIRAWMGHFSDIKIVAKHAARL 433
Query: 371 SLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCP 430
S T V + + I++ V ++G I +DG G IS+ LA
Sbjct: 434 GQCFSTTRA--VTGCPVTVREIDE----------VERNG--YIFSDGVGRISKFLAQMIM 479
Query: 431 TYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLL 490
T + ++ EPP + Q RL KG L
Sbjct: 480 TEF----------------------------KLQTPSEEPPSVFQFRL----GGCKGILT 507
Query: 491 LNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGG 550
++ + + + IR S K A N LE+++ S Q +L+R LI +LS G
Sbjct: 508 VSPEAQRREVHIRKSQYKFAA--------IHNGLEIIRWS-QFAAAHLNRQLIVVLSALG 558
Query: 551 VPEIFFLDILRNALDDARGVFSNKRNALK-VSFNYGGMDYDFTSARMILSGISLD-EPYL 608
V + F++ LR L+D +++ A+ + A+M+ G +P++
Sbjct: 559 VSDNIFIEKLRLMLEDLEQAMTSETKAMSMLQKRVDPNQMTLLLAQMVHDGFQGSCDPFV 618
Query: 609 QHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKS------------------- 648
+ L + + K L + K+ + + L G +D T LK
Sbjct: 619 KSLLELWRAWQIKYLKEKAKVFIDQGACLFGCLDETATLKGYYEKKRPSIEATYEERLEY 678
Query: 649 -NEVCIILKDGQ------VSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIF 701
E+ + + D + V ++ RNP LH GDI V++A V L K I
Sbjct: 679 LPEIFVQVFDNEEEKKYRVIEGPCILARNPSLHPGDIRVVRAVNVPALHHL----KDVIV 734
Query: 702 FPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLE 761
FP G R + +GGD DGD Y V + +L+ K+ R +A D ++
Sbjct: 735 FPQTGDRDVPSTCSGGDLDGDDYIVIWDQDLVPLPKDWFREPMDYTASNAQSLTRDVTVN 794
Query: 762 ELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIY 821
++ S F ++ P A + L D E E ++L ++
Sbjct: 795 DITS-FFVTYMKNDRLPQIAHA------------HLAFAD--YLEDGVNDERCIQLAQLH 839
Query: 822 YDALDAPKKSGIKVEVPEDLKVEKFPCYMRRD---ESVSFESTSVLGTIYNTVKSYE 875
A+D KSGI + DL K+P +M + + ++S +LG IY+ V+ E
Sbjct: 840 SAAVDY-NKSGIPANMTRDLVPRKWPHFMEKKYKPKEAQYQSKKILGQIYDIVERVE 895
>gi|393247227|gb|EJD54735.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 1217
Score = 93.2 bits (230), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 109/465 (23%), Positives = 194/465 (41%), Gaps = 87/465 (18%)
Query: 287 IAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKT 346
I R+G+ +G R + F + G ++ + + + V + A +G+ + S T
Sbjct: 460 ILRDGLTLGGRLFKFLAYSQSGLKQHWE-------QVWLVHTFTDA---LGHTH--SAST 507
Query: 347 VHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVY 406
+ + F + A +R+SL S T V +++ R+ + P DG+
Sbjct: 508 IRASLGTF--TKDERCPARVGARMSLAFSAT----VPSGSLSVARLRNLPDIGGDGHTCM 561
Query: 407 KDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESH 466
TDG G IS ++DR + + R +
Sbjct: 562 --------TDGAGLISRA----------------------AMDRAWIHFCAARGRRGRTA 591
Query: 467 YGEP-PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLE 525
P P ++QVR+ KG LL++ L I +RPSM+K A G+ ++++E
Sbjct: 592 ELPPAPSVIQVRV----KGAKGVLLVDPTLQGLRIVVRPSMVKFSA------GEQYDNIE 641
Query: 526 VVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSN--------KRNA 577
+ P + +L+R LI +L GVP+ FL + + + + + + + N
Sbjct: 642 ICNAFTAPSRAFLNRPLIMVLEARGVPKETFLWLQQQVVAETQLAVQSLLPAAALLESNG 701
Query: 578 LKVSFNYGGM----DYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQ-AGKLPVTE 632
L S N + F + + + ++ ++ L + + L+ G++PV +
Sbjct: 702 LGESLNLPTLLRRIASRFANFPEVEQHLVAEDAFMTRCLDFAVNHVLRGLKFRGRIPVPD 761
Query: 633 SYYLMGTVDPTGILKSNEVCIILKDG---QVSWEK--VLVYRNPGLHFGDIHVLKATYVK 687
S+ L+G D GIL+ EV + + DG ++ + K V V R+P H GD+ V++A
Sbjct: 762 SWTLVGVPDHHGILEEGEVLVGIMDGDPLRLRYLKGGVTVTRSPVCHPGDVMVMRAIGPP 821
Query: 688 ELEDFVGTS------KYAIFFPCNGPRSLADEIAGGDFDGDMYFV 726
G++ K I F G RS + GGD+DGD Y V
Sbjct: 822 R----AGSAFELLRPKNCIVFSTKGSRSPVSCLGGGDYDGDEYVV 862
>gi|389746474|gb|EIM87654.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 976
Score = 93.2 bits (230), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 132/280 (47%), Gaps = 32/280 (11%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P Q+R+ KG L + L + + +RPS K + D S+ T L++ TS
Sbjct: 378 PSCFQIRI----GGAKGILFQDPNLIGKMVCLRPSQTKFEND---SEALT---LDIASTS 427
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYD 590
++P + +L+R+LI LL + GV F+ + ++A D + A K+ F++ G
Sbjct: 428 SRPIRMFLNRSLILLLEFLGVKPDVFMALQKDATDAVERARHSFLEAAKL-FSHHGFGSS 486
Query: 591 FTSARM---ILSGISLDEPYLQH-RLSILMKEEKKSLQA--------GKLPVTESYYLMG 638
F A + +++ + LDE LQ IL K + + ++PV S+ L+G
Sbjct: 487 FRIASLFNNLVTQLKLDEGDLQGLECQILTKSIEYAATHVLREIKFRARIPVHGSWTLLG 546
Query: 639 TVDPTGILKSNEVCIILKDGQ--VSWE---KVLVYRNPGLHFGDIHVLKATYVKELEDFV 693
D G L+ E+ ++D S E +L+ R+P +H GD+ ++ A EL
Sbjct: 547 VSDEWGCLREGEIFATVRDEHSGTSVEIQGPMLITRSPQIHPGDVQMVTAVRRPELAHLT 606
Query: 694 GTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
+ F C G RSL + GGD DGD+Y + +P+L
Sbjct: 607 NV----VVFSCEGERSLPSMLGGGDLDGDIYNLILDPDLF 642
>gi|327305981|ref|XP_003237682.1| RNA-directed RNA polymerase [Trichophyton rubrum CBS 118892]
gi|326460680|gb|EGD86133.1| RNA-directed RNA polymerase [Trichophyton rubrum CBS 118892]
Length = 1604
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 150/659 (22%), Positives = 248/659 (37%), Gaps = 141/659 (21%)
Query: 257 DNILLVKFDEELGGHRSSNNWNDS----YSKYNEIAREGILVGLRCYHFFVFKDGGKEEK 312
D L V+F +E R ++ +N+ +++ GI VG R Y F F +
Sbjct: 647 DRFLRVRFTDEKYEGRINSTYNNCMDEVFTRVKRTMTNGITVGDRHYEFLAFGN------ 700
Query: 313 KKDPSTSPVKCYFVRMESSAFIDMGYQYI--LSGKTVHEARYMFMHVRTVSSVANYMSRL 370
S F + G + L T R H + VA + +RL
Sbjct: 701 ------------------SQFREHGAYFFASLPNLTAANIRAWMGHFSDIKIVAKHAARL 742
Query: 371 SLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCP 430
S T V + + I++ V ++G I +DG G IS+ LA
Sbjct: 743 GQCFSTTRA--VTGCPVTVRTIDE----------VERNG--YIFSDGVGRISKFLAQMIM 788
Query: 431 TYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLL 490
T + ++ EPP + Q RL KG L
Sbjct: 789 TEF----------------------------KLQTPSEEPPSVFQFRL----GGCKGILT 816
Query: 491 LNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGG 550
++ + + + IR S K A N LE+++ S Q +L+R LI +LS G
Sbjct: 817 VSPEAQRREVHIRKSQYKFAA--------IHNGLEIIRWS-QFAAAHLNRQLIVVLSALG 867
Query: 551 VPEIFFLDILRNALDDARGVFSNKRNALK-VSFNYGGMDYDFTSARMILSGISLD-EPYL 608
V + F+ LR L+D +++ A+ + A+M+ G +P++
Sbjct: 868 VSDEIFIQKLRLMLEDMEQAMTSETKAMSMLQKRVDPNQMTLLPAQMVHDGFQGSCDPFV 927
Query: 609 QHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKS------------------- 648
+ L + + K L + K+ + + L G +D T LK
Sbjct: 928 KSLLELWRAWQIKYLKEKAKVFIDQGACLFGCLDETATLKGYYEKKRPSIEATYEERLEY 987
Query: 649 -NEVCIILKDGQ------VSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIF 701
E+ + + D + V ++ RNP LH GDI V++A V L K I
Sbjct: 988 LPEIFVQVFDNEEEKKYRVIEGPCILARNPSLHPGDIRVVRAVNVPALHHL----KDVIV 1043
Query: 702 FPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKE--SERWMSTSKNLSANKRLIDFS 759
FP G R + +GGD DGD Y V + +L+ K+ E T+ N + R D +
Sbjct: 1044 FPQTGDRDVPSTCSGGDLDGDDYIVIWDQDLVPLPKDWFREPMDYTASNAQSLNR--DVT 1101
Query: 760 LEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLIN 819
+ ++ S F ++ P A + L D E E ++L
Sbjct: 1102 VNDITS-FFVTYMKNDRLPQIAHA------------HLAFAD--YLEDGVNDERCIQLAQ 1146
Query: 820 IYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRD---ESVSFESTSVLGTIYNTVKSYE 875
++ A+D KSGI + DL ++P +M + + ++S +LG IY+ V+ E
Sbjct: 1147 LHSAAVDY-NKSGIPANMTRDLVPRRWPHFMEKKYKPKEAQYQSKKILGQIYDIVERVE 1204
>gi|336273462|ref|XP_003351485.1| hypothetical protein SMAC_00026 [Sordaria macrospora k-hell]
Length = 1226
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 196/823 (23%), Positives = 321/823 (39%), Gaps = 193/823 (23%)
Query: 220 SGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQR-ELGDDNILLVKFDEELGG---HRSSN 275
SG T +Y + T GP L L++ D+ L V+F EE G S+
Sbjct: 409 SGLTKIYRA-LVTPTRIELHGPELEAMNRILRKFPEHQDHFLRVQFGEEDGQDLFFNSTV 467
Query: 276 NWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFID 335
+ + Y ++ ++ +GI VG R Y F F S S ++ + + + S+ FI
Sbjct: 468 SMDVIYQRFKDVLTKGISVGGRVYRFLGF------------SHSSLRAHSLWL-SAPFIH 514
Query: 336 MGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKT-MKLEVDFSRINIERIED 394
G I + + E F R + S A +R+ S+T + + I + R D
Sbjct: 515 NGVLRI--SENIIEGLGDF---RNIRSPARRAARIGQAFSETPYSVSLHDHGIAVIRQND 569
Query: 395 EPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELE 454
K G V+ +DG G IS+ LE
Sbjct: 570 V----KRGKRVF--------SDGVGKISQG---------------------------ALE 590
Query: 455 ANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRD 514
++ ++ + P +QVR KG L L+ +LP + I IR SM K ++ +
Sbjct: 591 VIHREIPASKGY----PNCLQVRW----AGAKGMLALDARLPGRQICIRDSMEKFRSHDE 642
Query: 515 LSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNK 574
LE+ +++P L+R +I +L G P +F+ + L R + ++
Sbjct: 643 -------EHLEICDMASKPIPLMLNRQMIKILEDMGAPAKWFVRLQEKELQRLRAITNSV 695
Query: 575 RNA---LKV-----SFNYG-------GMDYDFTSARMILSGISLDEPYLQHRLSILMKEE 619
N LK+ S + G M+ D+ + L GI S++++E
Sbjct: 696 HNVAAFLKLQCVGDSVHLGQFLKDVHKMNIDYRKDQF-LRGIVE---------SVVLREL 745
Query: 620 KKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCII-------LKDGQVSWEKVLVYRNPG 672
+ ++PV L G +D TG+L+ EV + KD S V+V R+P
Sbjct: 746 RLLKHKARIPVPRGITLFGVMDETGLLREGEVYVTYETVDDRFKDPPTS-GSVVVTRSPA 804
Query: 673 LHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPEL 732
LH GDI + + + + K I F NG R L +++GGD DGD + V + ++
Sbjct: 805 LHPGDIQIAQ-NVIPPAGHPLRELKNCIVFSQNGERDLPSQLSGGDLDGDTFNVIWDQKI 863
Query: 733 ---LKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCW 789
L+ F ++ T + L+ E+ES+ F + + AD
Sbjct: 864 VSKLETFAAADYPRVTPRELN----------REIESKDMADFF--------VEFMKADHL 905
Query: 790 QAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPE---------D 840
+ R + L D ++ E+ L+L ++ A+D KSGI V++ E D
Sbjct: 906 GVIAVRHMILAD--VRDQGTGDEDCLKLAELHSQAVDF-SKSGIHVDITELPRPPRYRPD 962
Query: 841 L---------KVEKFPCYMRRDESVS--------FESTSVLGTIYNTVKSYEAVDRSVTE 883
L K++ Y++ D + S +LG K Y AVD T+
Sbjct: 963 LPDVKIHDKSKIDLEEQYLKPDNDDDDDTPRYKYYASKKLLG------KLYRAVDE--TK 1014
Query: 884 IW----KLPCFDDGVP-----EACMTKWKGYYDQYRWEMKEAIDKCTVEREEAAELVIEK 934
IW KL DG E + K G + RW+ R + A + E
Sbjct: 1015 IWTRDIKLEVLSDGPSFWDELERSLLKRIGTIGEVRWK----------HRLDEARRIRES 1064
Query: 935 YKQILYGA-AEFEQS-TRTLEEIYNEALAIYNITYDLAASRRQ 975
Y+ + A EF S TR L+E+ E + + + SRRQ
Sbjct: 1065 YEDAIRDAMVEFADSPTRPLKEL--EVVIGFILNKKGIQSRRQ 1105
>gi|241633126|ref|XP_002410398.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
gi|215503415|gb|EEC12909.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
Length = 529
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 144/576 (25%), Positives = 223/576 (38%), Gaps = 115/576 (19%)
Query: 360 VSSVANYMSRLSLILSKT---MKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTD 416
+ SVA M+R+ S T +K+ +D + +ED P D G + G I +D
Sbjct: 11 IPSVAKKMARMGQCFSSTEESVKVPLDG-----KAVEDRP--DIVGGKHPRSGRPFIFSD 63
Query: 417 GTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQV 476
G G IS+ L ++ C K+LE + P +Q+
Sbjct: 64 GIGMISQPL--------LEKVC------------KKLE------------MAQIPSAIQI 91
Query: 477 RLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKT 536
R Y G KG L +N LP + +R SM K + +SLEV+K S PR
Sbjct: 92 R--YAG--YKGMLCVNPLLPGDKLVLRESMRKFTC-------SSSDSLEVIKVS-APRPV 139
Query: 537 YLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARM 596
L+R LI +L GVP FL + + + + AL+V Y F RM
Sbjct: 140 CLNRPLITILEQLGVPSRVFLCLQQKMVLMFADALVCESTALQVLCTYLSGALPFRRLRM 199
Query: 597 ILSGISLDE-PYLQHRLSILMKEEKKSLQAGK---LPVTESYYLMGTVDPTGILKSNEVC 652
G+ L P+++ L + K L +P+ + ++G +D T LK +V
Sbjct: 200 --HGLCLTRNPFVRSLLYTVYKSTMDGLHTKSRIAVPLNKGRNMLGVLDETDTLKYGQVF 257
Query: 653 IILK------DGQ----------VSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTS 696
+ +GQ VLV + P LH GD+ A V L
Sbjct: 258 VQYTALGPDTEGQDDGLPKTRIIFCTGAVLVTKCPCLHPGDVRKFTAVDVPALHHV---- 313
Query: 697 KYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL------KHFKESERWMSTSKNLS 750
K + FP GPR +E+AG D DGD Y V +LL K S+ N S
Sbjct: 314 KDCVVFPARGPRPHPNEMAGSDLDGDEYVVIWKKDLLFPGPNRKAMVFSDHSAPCDANKS 373
Query: 751 ANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAM 810
+ +I F ++++ + SNA AD + E
Sbjct: 374 LLEGMIQFVCNYIKNDNVGIM-------SNAHLAWAD----------------SLEDGIF 410
Query: 811 KENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESV-SFESTSVLGTIYN 869
+ L++ LD K+G + +D K ++P +M + S ++ S VLG +Y
Sbjct: 411 SKQCLQIARKISTCLDF-AKTGETSYLNKDEKPIQYPDFMEKGSSKDTYRSKRVLGHLYR 469
Query: 870 TVKSYEAVDRSVTEIWKLPCFDDGVPEACMTKWKGY 905
+S EAV + + C +DG + + G+
Sbjct: 470 LHRSLEAVVGTDFQT----CVEDGDADCSLFALPGW 501
>gi|156035913|ref|XP_001586068.1| hypothetical protein SS1G_13161 [Sclerotinia sclerotiorum 1980]
gi|154698565|gb|EDN98303.1| hypothetical protein SS1G_13161 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1404
Score = 92.8 bits (229), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 177/713 (24%), Positives = 276/713 (38%), Gaps = 153/713 (21%)
Query: 226 YHCHISTKGNCT-----FKGPYLNQTRTHLQ---RELGDDNILLVKFDEELGGHR----S 273
++C S K T F P + T L+ +E + L V+F +E R +
Sbjct: 446 HYCAFSRKATVTPSSIYFSSPTVETTNRVLRNYSKENKEGRFLRVQFTDEKAEGRINACA 505
Query: 274 SNNWNDS-YSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSA 332
ND +++ + GI +G R Y F F + E YF
Sbjct: 506 DKIRNDGLFTRVFRVISNGIRIGDRHYEFLAFGNSQFRENG---------AYF------- 549
Query: 333 FIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERI 392
F Y LS + + F H+ V A Y +RL S T + S ++ +I
Sbjct: 550 FCPPAY---LSCDDIRQWMGTFSHINVV---AKYAARLGQCFSTTRAIR-GLSAPDLVKI 602
Query: 393 EDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKE 452
D + ++G TDG G IS LA + +E
Sbjct: 603 PD----------IERNGYCF--TDGVGKISPFLA--------------------QMIAEE 630
Query: 453 LEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKAD 512
L+ RT S P Q RL KG L+++ + IR S K A
Sbjct: 631 LKL------RTNSA----PSAFQFRL----GGCKGILVVSPDAKNNEVHIRKSQQKFTA- 675
Query: 513 RDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFS 572
+N LE+++ S Q L+R I +LS GV + FL++L L D + S
Sbjct: 676 -------VYNGLEIIRCS-QFSSATLNRQTITILSSLGVKDEVFLNMLSEQLSDYQNAMS 727
Query: 573 NKRNALKVSFNYGGMDY-DFTSARMILSGISLD-EPYLQHRLSILMKEEKKSL-QAGKLP 629
N AL + Y +Y A MIL+G + EP++ L + K L + K+
Sbjct: 728 NNTIALNLLNRYIDDNYMTINIASMILNGFMTEKEPFVLSLLHLWRAWSIKLLKEKAKII 787
Query: 630 VTESYYLMGTVDPTGIL--------------KSNEVCIIL-------KDGQ--VSWEKVL 666
V +++G VD T L K +E+ I GQ V L
Sbjct: 788 VENGAFVLGCVDETNTLRGYTKPTVACGTTYKEDELPQIFIQVPNRENTGQYNVIEGICL 847
Query: 667 VYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFV 726
V RNP LH GD+ V++A V L + + FP +G R + +GGD DGD +FV
Sbjct: 848 VGRNPSLHPGDLRVVQAVNVPALHHL----RDVVVFPQSGERDVPSMCSGGDLDGDDFFV 903
Query: 727 SRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELES--ELFKLFLNTRFCPSNAKSL 784
+ K+ + SE W + +A L +L+ +L K F+ ++ +++
Sbjct: 904 IWD----KNLQPSE-WNCEPMSYAA---LAPVTLKRPVKVRDLLKFFV--KYMKNDSLPT 953
Query: 785 AADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVE 844
A A D LG+ + K L L ++ A+D K+G + L +
Sbjct: 954 IAHAHLAQAD---LLGNGIKDPKC------LELAELHSKAVDY-VKTGQPANMSRYLAPQ 1003
Query: 845 KFPCYMRRDE---SVSFESTSVLGTIYNTVKSY-------EAVDRSVTEIWKL 887
K+P +M + S + ST +LG +Y+ V+S E D+ + +KL
Sbjct: 1004 KWPHFMEKTHKPLSKQYHSTKILGQLYDKVESLHFVPQYEEPFDKRILRAYKL 1056
>gi|380095764|emb|CCC05810.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1230
Score = 92.8 bits (229), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 191/821 (23%), Positives = 317/821 (38%), Gaps = 185/821 (22%)
Query: 220 SGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQR-ELGDDNILLVKFDEELGG---HRSSN 275
SG T +Y + T GP L L++ D+ L V+F EE G S+
Sbjct: 409 SGLTKIYRA-LVTPTRIELHGPELEAMNRILRKFPEHQDHFLRVQFGEEDGQDLFFNSTV 467
Query: 276 NWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFID 335
+ + Y ++ ++ +GI VG R Y F F S S ++ + + + S+ FI
Sbjct: 468 SMDVIYQRFKDVLTKGISVGGRVYRFLGF------------SHSSLRAHSLWL-SAPFIH 514
Query: 336 MGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKT-MKLEVDFSRINIERIED 394
G I + + E F R + S A +R+ S+T + + I + R D
Sbjct: 515 NGVLRI--SENIIEGLGDF---RNIRSPARRAARIGQAFSETPYSVSLHDHGIAVIRQND 569
Query: 395 EPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELE 454
K G V+ +DG G IS+ LE
Sbjct: 570 V----KRGKRVF--------SDGVGKISQG---------------------------ALE 590
Query: 455 ANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRD 514
++ ++ + P +QVR KG L L+ +LP + I IR SM K ++ +
Sbjct: 591 VIHREIPASKGY----PNCLQVRW----AGAKGMLALDARLPGRQICIRDSMEKFRSHDE 642
Query: 515 LSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNK 574
LE+ +++P L+R +I +L G P +F+ + L R + ++
Sbjct: 643 -------EHLEICDMASKPIPLMLNRQMIKILEDMGAPAKWFVRLQEKELQRLRAITNSV 695
Query: 575 RNA---LKV-----SFNYG-------GMDYDFTSARMILSGISLDEPYLQHRLSILMKEE 619
N LK+ S + G M+ D+ + L GI S++++E
Sbjct: 696 HNVAAFLKLQCVGDSVHLGQFLKDVHKMNIDYRKDQF-LRGIVE---------SVVLREL 745
Query: 620 KKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCII-------LKDGQVSWEKVLVYRNPG 672
+ ++PV L G +D TG+L+ EV + KD S V+V R+P
Sbjct: 746 RLLKHKARIPVPRGITLFGVMDETGLLREGEVYVTYETVDDRFKDPPTS-GSVVVTRSPA 804
Query: 673 LHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPEL 732
LH GDI + + + + K I F NG R L +++GGD DGD + V + ++
Sbjct: 805 LHPGDIQIAQ-NVIPPAGHPLRELKNCIVFSQNGERDLPSQLSGGDLDGDTFNVIWDQKI 863
Query: 733 ---LKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCW 789
L+ F ++ T + L+ E+ES+ F + + AD
Sbjct: 864 VSKLETFAAADYPRVTPRELN----------REIESKDMADFF--------VEFMKADHL 905
Query: 790 QAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKF-PC 848
+ R + L D ++ E+ L+L ++ A+D KSGI V++ E + ++ P
Sbjct: 906 GVIAVRHMILAD--VRDQGTGDEDCLKLAELHSQAVDF-SKSGIHVDITELPRPPRYRPD 962
Query: 849 YMRRDESVSFESTSVLGTIYNTVKS-----------------------YEAVDRSVTEIW 885
++ V S + +K Y AVD T+IW
Sbjct: 963 FLVNRPDVKIHDKSKIDLEEQYLKPDNDDDDDTPRYKYYASKKLLGKLYRAVDE--TKIW 1020
Query: 886 ----KLPCFDDGVP-----EACMTKWKGYYDQYRWEMKEAIDKCTVEREEAAELVIEKYK 936
KL DG E + K G + RW+ R + A + E Y+
Sbjct: 1021 TRDIKLEVLSDGPSFWDELERSLLKRIGTIGEVRWK----------HRLDEARRIRESYE 1070
Query: 937 QILYGA-AEFEQS-TRTLEEIYNEALAIYNITYDLAASRRQ 975
+ A EF S TR L+E+ E + + + SRRQ
Sbjct: 1071 DAIRDAMVEFADSPTRPLKEL--EVVIGFILNKKGIQSRRQ 1109
>gi|325088329|gb|EGC41639.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus H88]
Length = 1522
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 146/638 (22%), Positives = 241/638 (37%), Gaps = 150/638 (23%)
Query: 257 DNILLVKFDEE--LGGHRSSNNWND-----SYSKYNEIAREGILVGLRCYHFFVFKDGGK 309
D L V+F +E +G S++N N+ Y++ I + GI++G R Y F F G
Sbjct: 642 DRFLRVRFCDEKYMGRIYSNSNGNNLCMSEVYARVTRILQHGIIIGDRHYEFLAF---GN 698
Query: 310 EEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSR 369
+ + E AF ++ T R + + VA Y +R
Sbjct: 699 SQFR---------------EHGAFFFASLPHL----TAANIRAQMGDLNNIKVVAKYAAR 739
Query: 370 LSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKC 429
L S T V + ++ ++D +++G V+ DG + T I DL +
Sbjct: 740 LGQCFSTTRA--VTSCPVQLKEVDD---IERNG-YVFSDGVGRLSHFLTQMIRSDLGINT 793
Query: 430 PTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTL 489
P+ G+PP Q RL KG L
Sbjct: 794 PS------------------------------------GQPPSAFQFRL----GGCKGIL 813
Query: 490 LLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYG 549
++ Q + IR S K A + LE+++ S+ T L+R LI +LS
Sbjct: 814 AVSSDAHGQEVHIRKSQYKFAA--------AHHGLEIIRHSHFSLAT-LNRQLILVLSCL 864
Query: 550 GVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLD----- 604
GVP+ F+ LR +D +N+ A+ + + D +IL+ + D
Sbjct: 865 GVPDKVFIAKLRMMMDKLEQAMTNEEQAVHLLQTH----VDPNQMTLILADMVRDGFQGS 920
Query: 605 -EPYLQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKS-------------- 648
EP++ L + + K L + K+ V E +L+G +D T LK
Sbjct: 921 KEPFVSSLLELWRTWQIKYLKEKAKIAVDEGAFLLGCIDETKTLKGYFRSSRPGQDATYE 980
Query: 649 -NEVCIILKDGQVSWEK-----------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTS 696
C+ QV W ++ RNP LH GDI V+KA L
Sbjct: 981 ERVACLPEIFVQV-WRHSEGKYVIIEGVCILARNPSLHPGDIRVVKAVNAPSLHHL---- 1035
Query: 697 KYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLI 756
+ + P G R ++ +GGD DGD Y V + ++L W + +A K +
Sbjct: 1036 RDVVVLPQTGDRDISSMCSGGDLDGDDYVVIWDQDIL-----PTDWFHDPMDYAAPKPEV 1090
Query: 757 ---DFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKEN 813
D +++++ K ++N + D + L L D E+ E
Sbjct: 1091 LDRDVTVDDIT----KFYVNY---------MQNDRLPQIALAHLALADYM--EEGVKNEK 1135
Query: 814 MLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMR 851
L+L ++ A+D KSGI V++ +LK F ++
Sbjct: 1136 CLQLAALHSAAVDY-NKSGIPVKLTRNLKPRSFATNLK 1172
>gi|397529811|gb|AFO53516.1| RNA-dependent RNA polymerase 6 [Solanum lycopersicum]
Length = 1197
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 108/395 (27%), Positives = 177/395 (44%), Gaps = 55/395 (13%)
Query: 500 IQIRPSMIKVKADRDLSDGQTFNSLEVVK-TSNQPRKTYLSRNLIALLSYGGVPEIFFLD 558
+ +RPSM K ++ + LE+ T QP +L+R +I LLS V + F +
Sbjct: 638 LSLRPSMKKFDSNHTI--------LEICSWTRLQP--GFLNRQIITLLSSLEVKDEMFWE 687
Query: 559 ILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGIS-LDEPYLQHRLSILMK 617
+ + L + + A V + T+A M+ +G EP+L+ L+ +
Sbjct: 688 MQKEMLSKLDKILVDSDVAFDV-ITASCAEAGNTAAIMLSAGFKPQSEPHLRGMLASIRA 746
Query: 618 EEKKSLQ-AGKLPVTESYYLMGTVDPTGILK-----------SNEVCI---------ILK 656
+ L+ ++ VT +LMG +D G L+ S E C I K
Sbjct: 747 AQLGDLRNKTRMFVTSGRWLMGCLDELGELEQGQCFIQVSSPSLETCFVKHGPEFSEIKK 806
Query: 657 DGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAG 716
+ QV V++ +NP LH GD+ +L+A V L + FP G R ++E +G
Sbjct: 807 NLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGLHHLYD----CLVFPQKGDRPHSNEASG 862
Query: 717 GDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRF 776
D DGD+YFV+ + L+ K+S WM + + K+L + +++ FL
Sbjct: 863 SDLDGDLYFVTWDENLIPPSKKS--WMPMAYAPAEAKQL---GRQVQHTDIIDFFLKNMV 917
Query: 777 CPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVE 836
+SL C V+ L+ E AM E L+L + A+D P K+G V
Sbjct: 918 ----QESLGEICNAHVVHADLS-------EFGAMDEKCLKLAELAALAVDFP-KTGKLVT 965
Query: 837 VPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTV 871
+P DLK + +P +M ++ S+ES +LG +Y V
Sbjct: 966 MPFDLKPKMYPDFMGKEPFQSYESKKILGKLYRQV 1000
>gi|302658845|ref|XP_003021121.1| hypothetical protein TRV_04770 [Trichophyton verrucosum HKI 0517]
gi|291185002|gb|EFE40503.1| hypothetical protein TRV_04770 [Trichophyton verrucosum HKI 0517]
Length = 1587
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 148/657 (22%), Positives = 245/657 (37%), Gaps = 137/657 (20%)
Query: 257 DNILLVKFDEELGGHRSSNNWNDS----YSKYNEIAREGILVGLRCYHFFVFKDGGKEEK 312
D L V+F +E R ++ +N+ +++ GI VG R Y F F +
Sbjct: 629 DRFLRVRFTDEKYEGRINSTYNNCMDEVFTRVKRTMTNGITVGDRHYEFLAFGN------ 682
Query: 313 KKDPSTSPVKCYFVRMESSAFIDMGYQYI--LSGKTVHEARYMFMHVRTVSSVANYMSRL 370
S F + G + L T R H + A + +RL
Sbjct: 683 ------------------SQFREHGAYFFASLPNLTAANIRAWMGHFSDIKIAAKHAARL 724
Query: 371 SLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCP 430
S T V + + I++ V ++G I +DG G IS+ LA
Sbjct: 725 GQCFSTTRA--VTGCPVTVREIDE----------VERNG--YIFSDGVGRISKFLAQMIM 770
Query: 431 TYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLL 490
T + ++ EPP + Q RL KG L
Sbjct: 771 TEF----------------------------KLQTPSEEPPSVFQFRL----GGCKGILT 798
Query: 491 LNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGG 550
++ + + + IR S K A N LE+++ S Q +L+R LI +LS G
Sbjct: 799 VSPEAQRREVHIRKSQYKFAA--------IHNGLEIIRWS-QFAAAHLNRQLIVVLSALG 849
Query: 551 VPEIFFLDILRNALDDARGVFSNKRNALK-VSFNYGGMDYDFTSARMILSGISLD-EPYL 608
V + F++ LR L+D +++ A+ + A+M+ G +P++
Sbjct: 850 VSDNIFIEKLRLMLEDLEQAMTSETKAMSMLQKRVDPNQMTLLLAQMVHDGFQGSCDPFV 909
Query: 609 QHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKS------------------- 648
+ L + + K L + K+ + + L G +D T LK
Sbjct: 910 KSLLELWRAWQIKYLKEKAKVFIDQGACLFGCLDETATLKGYYEKKRPSIEATYEERLEY 969
Query: 649 -NEVCIILKDGQ------VSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIF 701
E+ + + D + V ++ RNP LH GDI V++A V L K I
Sbjct: 970 LPEIFVQVFDNEEEKKYRVIEGPCILARNPSLHPGDIRVVRAVNVPALHHL----KDVIV 1025
Query: 702 FPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLE 761
FP G R + +GGD DGD Y V + +L+ K+ R +A D ++
Sbjct: 1026 FPQTGDRDVPSTCSGGDLDGDDYIVIWDQDLVPLSKDWFREPMDYTASNAQSLTRDVTVN 1085
Query: 762 ELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIY 821
++ S F ++ P A + L D E E ++L ++
Sbjct: 1086 DITS-FFVTYMKNDRLPQIAHA------------HLAFAD--YLEDGVNDERCIQLAQLH 1130
Query: 822 YDALDAPKKSGIKVEVPEDLKVEKFPCYMRRD---ESVSFESTSVLGTIYNTVKSYE 875
A+D KSGI + DL K+P +M + + ++S +LG IY+ V+ E
Sbjct: 1131 SAAVDY-NKSGIPANMTRDLVPRKWPHFMEKKYKPKEAQYQSKKILGQIYDIVERVE 1186
>gi|33331167|gb|AAQ10792.1| RNA-directed RNA polymerase-like protein [Branchiostoma floridae]
Length = 1005
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 134/290 (46%), Gaps = 32/290 (11%)
Query: 600 GISLDEPYLQH--RLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILK- 656
G+ +P L + R+ I +K + L VT +MGT+D TG L+ +V I
Sbjct: 568 GVLAQDPTLGNTDRIQIRGSMKKFESEHKTLEVTSGRIMMGTMDETGKLQYGQVFIQYSR 627
Query: 657 -------DGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRS 709
D V +V V +NP H GD+ A V EL V I FP GPR
Sbjct: 628 EVDKPQADKVVHQGQVTVTKNPYFHPGDMRKFTAVDVPELRHMVD----CIVFPSRGPRP 683
Query: 710 LADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFK 769
DE++G D DGDMYFV+ L+ +E+ M + + KR++ ++ ES++ +
Sbjct: 684 HPDEMSGSDLDGDMYFVTWREGLILP-RENRPAMDFT---AQPKRVLHRPVQ--ESDMIE 737
Query: 770 LFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPK 829
F + SN L A+ D+ E++ + + L ++ DA+DAP
Sbjct: 738 FF--AEYIGSNQLGLIANAHLVHADK---------EDQGIFSQKCIDLAQLHSDAVDAP- 785
Query: 830 KSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDR 879
K+G E+ DL+ E +P +M + + + S ++G ++ + ++ ++
Sbjct: 786 KTGQCPELKGDLRPEVYPDFMMKSDKPQYRSERIIGRLFRKCQELDSANQ 835
>gi|168044164|ref|XP_001774552.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
gi|162674107|gb|EDQ60620.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
Length = 843
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 190/880 (21%), Positives = 352/880 (40%), Gaps = 198/880 (22%)
Query: 197 EVWEKLGR-KNISQEDRRMSLKWDSGKTHMYHCHIS-TKGNCTFKGPYLNQT-RTHLQRE 253
E+ E+LG K R +S+K SG T + ++ TK CT GP ++ + R Q
Sbjct: 56 EIQEELGNMKETLSSPRSVSIKLASGMTWVRRVLVTPTKVYCT--GPEVDTSNRVTRQFA 113
Query: 254 LGDDNILLVKF-DEEL-------------GGHRSSNNWNDS--YSKYNEIAREGILVGLR 297
D + + F DE L GG + + S Y++ + +EGI++G
Sbjct: 114 SHSDRFMRMSFVDENLEPLSSVALSVPRRGGAQDGVDAERSLLYNRVLKTLKEGIVIGDH 173
Query: 298 CYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHV 357
+ F F S+S ++ E S ++ Y + T R
Sbjct: 174 KFEFLAF------------SSSQLR------EHSVWMFASYAQL----TATMIRAWMGDF 211
Query: 358 RTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDG 417
T+ +VA +R+ S + K ++ +E+I D D+ G Y +DG
Sbjct: 212 LTIRNVAKCAARMGQCFSSS-KPTLEVPEQEVEQIPDIEREDEFGMSKY------CFSDG 264
Query: 418 TGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVR 477
G IS++ A + + E P Q+R
Sbjct: 265 IGKISKEFAKEVAKRLQMEVV--------------------------------PSAFQIR 292
Query: 478 LFYNGTAVKGTLLLNKKLPPQT---IQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPR 534
Y G KG + ++ P + I +RPSM K + D + S++
Sbjct: 293 --YGG--YKGVVAVD----PHSDFKISLRPSMRKFASKHVGLD---------ILASSRFL 335
Query: 535 KTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSN---KRNALKVSFNYGGMDYDF 591
+YL+R +I LLS G+ + F + + + + + R+ L++ N+ G +
Sbjct: 336 PSYLNRQIILLLSTLGIEDSVFEQMQHRMVSELNDMLKDGDVARDMLQI--NHAG-EMHT 392
Query: 592 TSARMILSGISLD-EPYLQHRLSILMKEEKKSLQA-GKLPVTESYYLMGTVDPTGILKSN 649
M+ +G EP+++ L + L+ ++ + LMG +D T L
Sbjct: 393 RLIDMLAAGYQPQTEPFVKMLLEAFRASQLVDLRKRSRILEPKGRVLMGCLDETKSLSYG 452
Query: 650 EVCII----------LKDGQVSWEK------------------VLVYRNPGLHFGDIHVL 681
E+ + L+DG +++ V+V +NP LH GDI L
Sbjct: 453 EIFLQVTPALGRRKGLRDGLETFDSYPIGSAANQNIAYVVTGWVIVAKNPCLHPGDIRKL 512
Query: 682 KATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESER 741
KA L V + FP G R +E +G D DGD+YFVS + +L+ +
Sbjct: 513 KAVDGPGLRHMVD----CLVFPQKGHRPHPNECSGSDLDGDLYFVSWDEDLIPLNTDEPM 568
Query: 742 WMSTSKNLSANKRLIDFSLEELESELFKLFLNTRF-CPSNAKSLAADCWQAVMDRFLTLG 800
++ ++ + + ++EE++ K + SNA + AD
Sbjct: 569 DYTSPGAMTLDHHV---TIEEIQEFFVKYMVTDSLGVISNAHVVNADI------------ 613
Query: 801 DESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFES 860
E A ++ + + +L+++ A+D PK +G+ +P++L+ K+P +M + + +++S
Sbjct: 614 -EPAMARSTACQELAKLVSL---AVDFPK-TGVPAIIPQNLRPTKYPDFMEKGDKETYKS 668
Query: 861 TSVLGTIYNTVKSY-----------EAVDRSVTEIWKLPCFDDGVPEACMTKWK------ 903
VLG ++ VK E ++R+ + + +++ + A K +
Sbjct: 669 ERVLGKLFRQVKDASLEKLPCEIPREDIERAFDPVMVITGYEEFIDMAKFHKNEYDRKLI 728
Query: 904 GYYDQYRWEMK-EAIDKCTV--------EREEAAELVIEKYKQILYGAAE-FEQSTRTL- 952
G +QY E + EA+ + RE+ E + + + ++ A + F+++ +
Sbjct: 729 GLMNQYGIETEAEAVSGYMLNLARQYVKRREDVVERIRDAVRSLINEARQRFDENADDMV 788
Query: 953 -EEIYNEALAIYNITYDL------AASRRQVSYCSFAWRV 985
++IY +A A Y++TY A RR+V SF W +
Sbjct: 789 DDDIYAKASAWYHVTYHPEHIKVSATGRREVHLISFPWVI 828
>gi|391332207|ref|XP_003740528.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Metaseiulus
occidentalis]
Length = 1437
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 105/425 (24%), Positives = 179/425 (42%), Gaps = 53/425 (12%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P +Q+R Y G KG + L+ LP + + +R SMIK + + LEV+K S
Sbjct: 607 PSALQIR--YRGC--KGMISLDTTLPGRKLVLRESMIKFQC-------TSPRKLEVIKWS 655
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYD 590
P +L+R+LIA+L + G+ FL + + + +AL+V ++
Sbjct: 656 -APMNMFLNRSLIAILEHHGIRTDVFLRLQLEMIMQVADSLVCEASALRVLTSFVKTPVP 714
Query: 591 FTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGK---LPVTESYYLMGTVDPTGILK 647
F + + D P++ L L+K +L+ +PV E ++G VD TGIL
Sbjct: 715 FAGLAEVGWELVRD-PFIIQMLYDLLKNALVNLKVKANVAIPVNEGRNMLGVVDETGILD 773
Query: 648 SNEVCIILKDG----------QVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSK 697
+V I + ++ V++ + P +H GD+ L+A V +L +
Sbjct: 774 YGQVFIQFTEMPYTDVSNARVRIVEGDVVITKCPCMHPGDVRRLRAVDVPQLRHI----R 829
Query: 698 YAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLID 757
+ FP G E++G D DGD Y + EL+ + + ++ K N
Sbjct: 830 DCVVFPSRGKAPHPFEMSGSDLDGDEYVCIWSEELIFE-RNAMPYVYDDKPFGVNP---- 884
Query: 758 FSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRL 817
F E+ F + D + + L D++ E L L
Sbjct: 885 FKHNSDETNFF------------CNYIGNDIIGIISNAHLAWADQA----GIASEKCLAL 928
Query: 818 INIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRR-DESVSFESTSVLGTIYNTVKSYEA 876
+ ALD K+G ++ + K EKFP +M + D S++S LG +Y TV+ A
Sbjct: 929 VGKASKALDF-AKTGDAADLYPNEKPEKFPDFMEKGDHKHSYQSQKALGILYRTVRQIMA 987
Query: 877 VDRSV 881
V+ ++
Sbjct: 988 VNDTM 992
>gi|358366477|dbj|GAA83098.1| rna-dependent rna polymerase [Aspergillus kawachii IFO 4308]
Length = 1212
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 118/516 (22%), Positives = 204/516 (39%), Gaps = 87/516 (16%)
Query: 227 HCHISTKGNCTFKGPYLNQTRTHLQR-ELGDDNILLVKFDEELGGHRSSN---NWNDSYS 282
H + T T GP L L+R D + V+F +E G N +++D +S
Sbjct: 420 HKVMVTPTRVTLHGPELEPRNRILRRFPKHHDFFIRVQFCDENGQDLHFNSRVHYDDVFS 479
Query: 283 KYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYIL 342
++ + GI + R Y F + S S ++ + V SS F+D Q+
Sbjct: 480 RFKSVLTRGIQIAGRTYSFLGW------------SHSSLRSHAVWF-SSPFVDESGQF-- 524
Query: 343 SGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDG 402
+T + S A +R+ + T + S +I E DG
Sbjct: 525 --QTHFSIIKALGDFSKIQSPARCAARIGQAFTDT-HYAISLSEYDINVSEVADVTSNDG 581
Query: 403 NVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVAR 462
V+ +DG G +S D+A ++ ++K
Sbjct: 582 KRVF--------SDGVGTLSWDVAETIWHHIPEKKGL----------------------- 610
Query: 463 TESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFN 522
P QVRL KG L ++ +L + IRPSMIK + D
Sbjct: 611 --------PTCFQVRL----GGAKGMLAVDGRLSGSQVNIRPSMIKFQGD--------MK 650
Query: 523 SLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSF 582
LE+ + +P L+R +I +L G P+ +F+ + AL R V ++ N+ +V
Sbjct: 651 DLEICDMAAKPMGLVLNRQMIKILEDMGTPDEWFITLQEAALTKLRSVTASAHNS-EVFI 709
Query: 583 NYGGMDYDFTSARMILSGISLD-----EPYLQHRL-SILMKEEKKSLQAGKLPVTESYYL 636
+ R+ D EP+++ + ++++KE + ++PV + L
Sbjct: 710 KKQAVGDSIGLYRLFRHCHLRDLDYKKEPFIRSVVEAVVLKELRLLKHKARIPVFKGITL 769
Query: 637 MGTVDPTGILKSNEVCIILK--DGQVSWE----KVLVYRNPGLHFGDIHVLKATYVKELE 690
G +D TG+L++ +V + + +G+ + VLV R+P LH GDI + +
Sbjct: 770 FGVMDETGLLEAEQVYVTYEPVEGRHAPPPNSGTVLVTRSPALHDGDIQYAQNVIPPDNH 829
Query: 691 DFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFV 726
+ I F G R L +++GGD DGD++ V
Sbjct: 830 PLAELTN-CIVFSSKGYRDLPSQLSGGDLDGDIFNV 864
>gi|393247829|gb|EJD55336.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 1217
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 114/452 (25%), Positives = 201/452 (44%), Gaps = 57/452 (12%)
Query: 409 GEALIHTDGTGFISEDLALK-CPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHY 467
+A TD + + E L L P +C +D S D E + R +
Sbjct: 559 AQAFSATDPSVEVEEILPLDDIPKASSGPQCMSDGVGTMSRDFSEQVWEALESRRNKGRR 618
Query: 468 GE---PPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSL 524
G+ P Q+R Y G KG L ++ KL I +RPSMIK + DL+ + L
Sbjct: 619 GKNRPAPSAFQIR--YKGA--KGMLSVDYKLKGSVICLRPSMIKFE---DLNSRE----L 667
Query: 525 EVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNY 584
E+ + N P + YL+R LI LL GV F+++ + AL+D + A ++ ++
Sbjct: 668 EIARAFNTPARMYLNRPLIVLLEGLGVKPDVFMNLQQAALEDIHKAAGSLDTAARMLESH 727
Query: 585 G-GMDYD----FTSARMI------LSGISLDEPYLQHRLSILMKEEKKSLQ-AGKLPVTE 632
G G + FTS + +S + ++ + + L + ++ L+ ++PV +
Sbjct: 728 GLGAAFRLPSLFTSLHKLRDKHSAISELLAEDDFFRRVLDFAINHIRRELKYKARIPVPD 787
Query: 633 SYYLMGTVDPTGILKSNEVCIILK--DGQVSW---EKVLVYRNPGLHFGDIHVLKAT-YV 686
S+ L+G VD LK E+ +K D + + +L+ R+P +H GD+ V++A
Sbjct: 788 SWTLVGVVDVHDYLKEGEIFAAVKPRDAKKPFYLQGPMLITRSPVIHPGDVQVVRAIGRP 847
Query: 687 KELEDFVGTS-KYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMST 745
FV + F G RSLA + GGD+DGD+Y + EL H K
Sbjct: 848 PPGSPFVHEELPNCVVFSIKGKRSLASCLGGGDYDGDIYNICPLTEL--HPKSCH---PP 902
Query: 746 SKNLSANKRLID--FSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDES 803
++ ++++D +E++ ++ ++N+ D + +L + D
Sbjct: 903 AEYAPGQRKILDRPCGIEDI-ADFVTEYINS------------DLLGHISVNWLLIAD-- 947
Query: 804 AEEKAAMKENMLRLINIYYDALDAPKKSGIKV 835
A E+ + +L ++ DA+D P K+G+ V
Sbjct: 948 ASERGIFHPDCFKLAQLHSDAVDYP-KTGMPV 978
>gi|397600982|gb|EJK57779.1| hypothetical protein THAOC_22138 [Thalassiosira oceanica]
Length = 1292
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 96/368 (26%), Positives = 167/368 (45%), Gaps = 40/368 (10%)
Query: 500 IQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDI 559
I +RPS +K A + SLEVV + + +L+RN++ L S+ G+ + FL +
Sbjct: 690 ICLRPSQVKFSA--------PYMSLEVVNLATRI-PYFLNRNVVLLGSHLGIQDGIFLCL 740
Query: 560 LRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSA--RMILSGISLD-EPYLQHRLSILM 616
+ + D + + +AL+ + G D S M+L+G+ + +P+L L
Sbjct: 741 QKEMIQDLNLLLYDADHALRFLPSLSGPDCSLVSTLMSMLLAGMKPNIDPFLFSCLHTTR 800
Query: 617 KEEKKSL-QAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWE----KVLVYRNP 671
+L + ++ V + LMG +D TG++ N V I +K S++ KV+V ++P
Sbjct: 801 AHHMMTLRKKARIFVKDGAVLMGCLDETGLVPENSVFIQVKHDNGSFKPIEGKVMVTKHP 860
Query: 672 GLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPE 731
+H GD+ +L+A + EL++ K I F +G R AD+++G D DGD++ V+ +
Sbjct: 861 VMHPGDMRMLEAVNIPELKNM----KDIIIFSRHGSRPEADKMSGSDLDGDLFAVTWDKR 916
Query: 732 LLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQA 791
L S L I+ +S L F+ ++ + W
Sbjct: 917 LFLRQSLDPMEYSPPPTLGQETPPIN------DSSLLAHFVG--HAKNDNLGRISMLW-- 966
Query: 792 VMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMR 851
+D +T G E +RL + A+D P KSGI +P+DLK++
Sbjct: 967 -LDHAVTKGGAGCHE-------CVRLAKLASIAVDFP-KSGISATLPDDLKIKSTVIQNI 1017
Query: 852 RDESVSFE 859
S+ FE
Sbjct: 1018 TSLSICFE 1025
>gi|154290540|ref|XP_001545863.1| hypothetical protein BC1G_15614 [Botryotinia fuckeliana B05.10]
Length = 1173
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 162/695 (23%), Positives = 268/695 (38%), Gaps = 144/695 (20%)
Query: 226 YHCHISTKGNCT-----FKGPYL---NQTRTHLQRELGDDNILLVKF-DEELGGHRSS-- 274
++C S K T F P + N+ H +E + L V+F DE+ G +S
Sbjct: 219 HYCAFSRKATVTPTSILFNSPTVETTNRVLRHYSKENQEGRFLRVQFTDEKFEGRINSCA 278
Query: 275 -NNWNDS-YSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSA 332
ND+ +++ + GI +G R Y F F + E YF ++
Sbjct: 279 DKIRNDAIFTRVFRVISNGIRIGDRHYEFLAFGNSQFRENG---------AYFFCPSAN- 328
Query: 333 FIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERI 392
LS + + F H+ V A Y +RL S T ++ S +I +I
Sbjct: 329 ---------LSCNDIRQWMGTFSHINVV---AKYAARLGQCFSTTRAIK-GLSAPDIVKI 375
Query: 393 EDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKE 452
D + G + DG I I+ +L L+
Sbjct: 376 PDI----ERGRYCFTDGVGKISPYLAQMIASELKLRV----------------------- 408
Query: 453 LEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKAD 512
D+A P Q RL KG L+++ + IR S K A
Sbjct: 409 ------DLA---------PSAFQFRL----GGCKGILVVSPDAKDNEVHIRKSQQKFTA- 448
Query: 513 RDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFS 572
+N LE+++ S Q L+R I +LS GV + FL +L L D + S
Sbjct: 449 -------AYNGLEIIRCS-QFSSATLNRQTITILSALGVKDEVFLKMLSRQLSDYQSAMS 500
Query: 573 NKRNALKVSFNYGGMDY-DFTSARMILSG-ISLDEPYLQHRLSILMKEEKKSL-QAGKLP 629
N AL + Y ++ A MIL+G +S EP++ L + K L + K+
Sbjct: 501 NNAIALGLLNRYIDDNHMTINIAGMILNGFMSEKEPFVLSLLHLWRAWSIKLLKEKAKII 560
Query: 630 VTESYYLMGTVDPTGILKS-----------------NEVCIILKDGQVSWEK------VL 666
V +++G VD T L+ ++ I + D + + + L
Sbjct: 561 VENGAFVLGCVDETNTLRGYTKPTVAYGTTYKETELPQIFIQVPDRENTTQYNVIEGICL 620
Query: 667 VYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFV 726
V RNP LH GD+ V++A + L + + FP +G R + +GGD DGD +FV
Sbjct: 621 VGRNPSLHPGDLRVVQAVNIPALHHL----RDVVVFPQSGERDVPSMCSGGDLDGDDFFV 676
Query: 727 SRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAA 786
+ +L E + + A KR + + ++L K F+ K +
Sbjct: 677 IWDKDLQPTEWNCEPMSYAALDPVALKRPV------VVTDLQKFFV---------KYMKN 721
Query: 787 DCWQAVMDRFLTLGDESAEEKAAMKE-NMLRLINIYYDALDAPKKSGIKVEVPEDLKVEK 845
D ++ L D +K +K+ L+L ++ A+D K+G + + L K
Sbjct: 722 DSLPSIAHAHLAQAD---YQKQGIKDPKCLKLAELHSKAVDY-VKTGQPATMQKYLAPPK 777
Query: 846 FPCYMRR---DESVSFESTSVLGTIYNTVKSYEAV 877
+P +M + S + S +LG +Y+ V+S + V
Sbjct: 778 WPHFMEKIHQPASKQYHSQKILGQLYDKVESVDFV 812
>gi|409051493|gb|EKM60969.1| hypothetical protein PHACADRAFT_168316 [Phanerochaete carnosa
HHB-10118-sp]
Length = 968
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 90/328 (27%), Positives = 149/328 (45%), Gaps = 37/328 (11%)
Query: 462 RTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTF 521
R S + P +Q+R + G+ KG L ++ L + I +RPSMIK +A
Sbjct: 622 RRGSRWQTYPRALQIR--FQGS--KGMLSVDHTLSGRAICLRPSMIKFEALNS------- 670
Query: 522 NSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVS 581
N +EV + N+P YL+R LI +L + GV F D+ A+ DA+ + A ++
Sbjct: 671 NQIEVARAFNRPGPFYLNRPLIMILEHLGVQHEVFQDLQDAAVMDAQQSVESLEKAARLL 730
Query: 582 FNYG-GMDYDFTSARMILSGISL----DEPYLQHRLSILMKEEKKSLQ-AGKLPVTESYY 635
+G G + TS + L +++ ++ + + + + + L+ ++PV ++
Sbjct: 731 ETFGLGASFRLTSVFLSLHKLAVGPLTEDNFWRKMMDFAVNHVLRELKHHARIPVPNAWN 790
Query: 636 LMGTVDPTGILKSNEV--CIILKDGQVSW---EKVLVYRNPGLHFGDIHVLKATYVK--- 687
L+G D G L+ +EV CI DG +VLV R+P +H GD+ V++
Sbjct: 791 LVGVADVHGYLEEHEVFGCIYPTDGTGPIYLDGRVLVTRSPTIHPGDVQVVQGIGRPPPG 850
Query: 688 ---ELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSR-NPELLKHFKESERWM 743
E E T + F G R L + GGD DGD Y V+ +P L +
Sbjct: 851 SPFERESLRNT----LVFSVKGTRPLPSYLGGGDLDGDEYRVTMLDPLLPPRTYLPASYT 906
Query: 744 STSKNL----SANKRLIDFSLEELESEL 767
K L S K + DF +E + S++
Sbjct: 907 PAEKKLLDRPSTMKDVADFVMEYINSDV 934
>gi|4138282|emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
Length = 1116
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 152/682 (22%), Positives = 266/682 (39%), Gaps = 141/682 (20%)
Query: 230 ISTKGNCTFKGPYLNQTRTHLQRELGD-DNILLVKF-DEELGGHRSSN----------NW 277
+ T F GP +N + L+ D +N L V F DEE S++
Sbjct: 361 VVTPCKVYFCGPEVNVSNRVLRNYSEDINNFLRVSFVDEEWEKIHSTDLLPRASTGNGTR 420
Query: 278 NDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMG 337
D Y + R G ++G + + F F S+S ++ V M +S
Sbjct: 421 TDIYERILSTLRNGFIIGDKRFEFLAF------------SSSQLRDNSVWMFASR----- 463
Query: 338 YQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPC 397
G T ++ R R + +VA Y +RL + + + R +E I D C
Sbjct: 464 -----PGLTANDIRTWMGDFRQIRNVAKYAARLGQSFGSSRE-TLSVGRHEVEVIPDVAC 517
Query: 398 RDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANF 457
N ++ +DG G IS D A + KC
Sbjct: 518 SLHGTNYIF--------SDGIGKISADFAHRVTI-----KC------------------- 545
Query: 458 SDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSD 517
+ T S + Q+R Y G KG + ++ + +R SM+K +++
Sbjct: 546 -GLQYTPSSF-------QIR--YGG--YKGVVAVDP-YSSMKLSLRKSMLKYESNN---- 588
Query: 518 GQTFNSLEVVKTSN-QPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRN 576
L+V+ S QP YL+R L+ LLS GV + A+D + +
Sbjct: 589 ----IKLDVLGWSKYQP--CYLNRQLVTLLSTLGVIDDVLEQKQNEAVDQLDAILHDSLK 642
Query: 577 ALK-VSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQA-GKLPVTESY 634
A + + G + + + + EP+L L + L+ ++ +
Sbjct: 643 AQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPNGR 702
Query: 635 YLMGTVDPTGILKSNEVCIILK----------------DGQVSWE-----KVLVYRNPGL 673
+MG +D + L+ +V + G + + V+V +NP L
Sbjct: 703 TMMGCLDESRTLEYGQVFVQFSGAGRRQFFEESHPFNDSGSANCDFILKGNVVVAKNPCL 762
Query: 674 HFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
H GDI VL+A V L V + FP G R +E +G D DGD+YFV +P+L+
Sbjct: 763 HPGDIRVLRAVDVPALHHMVD----CVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLI 818
Query: 734 --KHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQA 791
+ + + + + L D ++EE+E E F T + +++ + A+
Sbjct: 819 PPRQVQSMDYTPAPTTQLDH-----DVTIEEVE-EYF-----TNYIINDSLGIIANAHVV 867
Query: 792 VMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMR 851
DR E AM + +L ++ A+D P K+G+ E+P L+ +++P +M
Sbjct: 868 FADR---------EPDMAMSDPCKQLAQLFSIAVDFP-KTGVPAEIPSQLRPKEYPDFME 917
Query: 852 RDESVSFESTSVLGTIYNTVKS 873
+ + ++ S V+G ++ VK+
Sbjct: 918 KPDKPTYPSEKVIGKLFQKVKN 939
>gi|350537951|ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase [Solanum lycopersicum]
Length = 1114
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 164/703 (23%), Positives = 274/703 (38%), Gaps = 146/703 (20%)
Query: 209 QEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGD-DNILLVKF-DE 266
Q + S+ D G ++ + T F GP +N + L+ D DN L V F DE
Sbjct: 341 QPPKSPSITLDDGLVYVRRVLV-TPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDE 399
Query: 267 EL----------GGHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDP 316
E S + Y + R+G ++G + + F F
Sbjct: 400 EWEKLYSTDLLPKASTGSGVRTNIYERILSTLRKGFVIGDKKFEFLAF------------ 447
Query: 317 STSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSK 376
S+S ++ V M +S G T ++ R + +VA Y +RL
Sbjct: 448 SSSQLRDNSVWMFASR----------PGLTANDIRAWMGDFSQIKNVAKYAARLGQSFGS 497
Query: 377 TMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKE 436
+ + + R IE I D V G + + +DG G IS D A + +
Sbjct: 498 SRE-TLSVLRHEIEVIPD----------VKVHGTSYVFSDGIGKISGDFAHRVAS----- 541
Query: 437 KCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLP 496
KC + P Q+R Y G KG + ++
Sbjct: 542 KCGLQYT---------------------------PSAFQIR--YGG--YKGVVGVDPD-S 569
Query: 497 PQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSN-QPRKTYLSRNLIALLSYGGVPEIF 555
+ +R SM K ++D L+V+ S QP YL+R LI LLS GV +
Sbjct: 570 SMKLSLRKSMSKYESDN--------IKLDVLGWSKYQP--CYLNRQLITLLSTLGVKDEV 619
Query: 556 FLDILRNALDDARGVFSNKRNALK-VSFNYGGMDYDFTSARMILSGISLD-EPYLQHRLS 613
+ A+D + + A + + G + + A M+ G D EP+L L
Sbjct: 620 LEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKA-MLNCGYKPDAEPFLSMMLQ 678
Query: 614 ILMKEEKKSLQA-GKLPVTESYYLMGTVDPTGILKSNEVCIILK---DGQVSWE------ 663
+ L+ ++ + +MG +D + L+ +V + G+ S +
Sbjct: 679 TFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGAGHGEFSDDLHPFNN 738
Query: 664 ------------KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLA 711
V+V +NP LH GDI VLKA V+ L V + FP G R
Sbjct: 739 SRSTNSNFILKGNVVVAKNPCLHPGDIRVLKAVNVRALHHMVD----CVVFPQKGKRPHP 794
Query: 712 DEIAGGDFDGDMYFVSRNPELL--KHFKESERWMSTSKNLSANKRLIDFSLEELESELFK 769
+E +G D DGD+YFV + +++ + + E + S L D ++EE+E E F
Sbjct: 795 NECSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQLDH-----DVTIEEVE-EYF- 847
Query: 770 LFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPK 829
T + +++ + A+ DR E AM + +L ++ A+D PK
Sbjct: 848 ----TNYIVNDSLGIIANAHVVFADR---------EPDMAMSDPCKKLAELFSIAVDFPK 894
Query: 830 KSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVK 872
+G+ E+P L+ +++P +M + + S+ S V+G ++ VK
Sbjct: 895 -TGVPAEIPSQLRPKEYPDFMDKPDKTSYISERVIGKLFRKVK 936
>gi|389646751|ref|XP_003721007.1| RNA-dependent RNA polymerase 1 [Magnaporthe oryzae 70-15]
gi|351638399|gb|EHA46264.1| RNA-dependent RNA polymerase 1 [Magnaporthe oryzae 70-15]
Length = 1407
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 157/691 (22%), Positives = 271/691 (39%), Gaps = 153/691 (22%)
Query: 227 HCHISTKGNCTFKGPYLN----QTRTHLQRELGD--DNILLVKFDEEL--GGHRSSNNW- 277
+C ++ K T YL+ +T + R + D L V+F +EL G + N+
Sbjct: 452 YCTMTRKVTVTPSTMYLSSPMVETTNRVLRHYNEHKDRFLRVQFTDELPTGRLHAPNDLG 511
Query: 278 --NDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFID 335
++ +S+ + + GI +G R Y F F G + +++ + YF F D
Sbjct: 512 ADDEIFSRVYRVLKNGIHIGDRHYKFLAF---GSSQMRENST------YF-------FCD 555
Query: 336 MGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDE 395
G ++ ++ F H+R +V Y +RL S T ++ R+ + I+
Sbjct: 556 AGD---VTCDSIRAWMGRFSHIR---NVGKYAARLGQCFSTTRSID----RVAMPWIKTI 605
Query: 396 PCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEA 455
P +K+G + DG I + ISE+L L Y+
Sbjct: 606 PDIEKNG-YCFTDGVGKISSLWAVVISENLKLD---YI---------------------- 639
Query: 456 NFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDL 515
P Q R+ KG L++ + + Q I IRPS +K + D
Sbjct: 640 ---------------PSAFQFRM----GGCKGVLVVWEDVKGQEIHIRPSQLKFETDH-- 678
Query: 516 SDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKR 575
+ LEV++ S+ + L+R I++L+ GV F +L L +
Sbjct: 679 ------SRLEVIRCSHFSVAS-LNRQTISVLTSLGVKNEVFESMLAEQLAKYNRAMEDAT 731
Query: 576 NALKVSFNYGGMD-YDFTSARMILSG-ISLDEPYLQHRLSILMKEEKKSL-QAGKLPVTE 632
A+ + Y + T AR++ +G + EP++ L + K+L + +L V +
Sbjct: 732 AAMTLLTQYVDENQMTNTLARLVKAGFMESHEPFVCTMLRLWRTWSVKTLKEKARLVVEK 791
Query: 633 SYYLMGTVDPT---------------------GILKSNEVCIILKDGQVSWEKV-----L 666
+++G VD T G +K E+ + + DG KV L
Sbjct: 792 GAFVLGCVDETKTLHGHFTHIPASPNQRPRLNGNMKLPEIFLQVPDGPSRDYKVITGLCL 851
Query: 667 VYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFV 726
V RNP LH GDI V++A V +L + + F G R + +GGD DGD +FV
Sbjct: 852 VGRNPSLHPGDIRVVQAIDVPQLRHI----RDVVVFAQTGDRDIPGMCSGGDLDGDDFFV 907
Query: 727 SRNPELL-----KHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNA 781
+ LL +++K + ++ L D + F ++ P A
Sbjct: 908 LWDERLLPLPSQRNYKPASYHPPPARELDREVTADDL------CQFFVTYMKNFSLPRIA 961
Query: 782 KSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDL 841
+ A A++ A E L L ++ A+D P K+G+ + L
Sbjct: 962 HAHLA----------------QADKYGAKDEKCLELAYLHSLAVDYP-KTGVPAAIRPRL 1004
Query: 842 KVEKFPCYMRRDESVSFESTSVLGTIYNTVK 872
+FP +M + + S +LG +Y+ VK
Sbjct: 1005 MPNEFPHFMEKARG-RYHSRKILGKLYDQVK 1034
>gi|440466934|gb|ELQ36175.1| RNA-dependent RNA polymerase 1 [Magnaporthe oryzae Y34]
gi|440478755|gb|ELQ59556.1| RNA-dependent RNA polymerase 1 [Magnaporthe oryzae P131]
Length = 1977
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 157/691 (22%), Positives = 271/691 (39%), Gaps = 153/691 (22%)
Query: 227 HCHISTKGNCTFKGPYLN----QTRTHLQRELGD--DNILLVKFDEEL--GGHRSSNNW- 277
+C ++ K T YL+ +T + R + D L V+F +EL G + N+
Sbjct: 1022 YCTMTRKVTVTPSTMYLSSPMVETTNRVLRHYNEHKDRFLRVQFTDELPTGRLHAPNDLG 1081
Query: 278 --NDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFID 335
++ +S+ + + GI +G R Y F F G + +++ + YF F D
Sbjct: 1082 ADDEIFSRVYRVLKNGIHIGDRHYKFLAF---GSSQMRENST------YF-------FCD 1125
Query: 336 MGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDE 395
G ++ ++ F H+R +V Y +RL S T ++ R+ + I+
Sbjct: 1126 AGD---VTCDSIRAWMGRFSHIR---NVGKYAARLGQCFSTTRSID----RVAMPWIKTI 1175
Query: 396 PCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEA 455
P +K+G + DG I + ISE+L L Y+
Sbjct: 1176 PDIEKNG-YCFTDGVGKISSLWAVVISENLKLD---YI---------------------- 1209
Query: 456 NFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDL 515
P Q R+ KG L++ + + Q I IRPS +K + D
Sbjct: 1210 ---------------PSAFQFRM----GGCKGVLVVWEDVKGQEIHIRPSQLKFETDH-- 1248
Query: 516 SDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKR 575
+ LEV++ S+ + L+R I++L+ GV F +L L +
Sbjct: 1249 ------SRLEVIRCSHFSVAS-LNRQTISVLTSLGVKNEVFESMLAEQLAKYNRAMEDAT 1301
Query: 576 NALKVSFNYGGMD-YDFTSARMILSG-ISLDEPYLQHRLSILMKEEKKSL-QAGKLPVTE 632
A+ + Y + T AR++ +G + EP++ L + K+L + +L V +
Sbjct: 1302 AAMTLLTQYVDENQMTNTLARLVKAGFMESHEPFVCTMLRLWRTWSVKTLKEKARLVVEK 1361
Query: 633 SYYLMGTVDPT---------------------GILKSNEVCIILKDGQVSWEKV-----L 666
+++G VD T G +K E+ + + DG KV L
Sbjct: 1362 GAFVLGCVDETKTLHGHFTHIPASPNQRPRLNGNMKLPEIFLQVPDGPSRDYKVITGLCL 1421
Query: 667 VYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFV 726
V RNP LH GDI V++A V +L + + F G R + +GGD DGD +FV
Sbjct: 1422 VGRNPSLHPGDIRVVQAIDVPQLRHI----RDVVVFAQTGDRDIPGMCSGGDLDGDDFFV 1477
Query: 727 SRNPELL-----KHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNA 781
+ LL +++K + ++ L D + F ++ P A
Sbjct: 1478 LWDERLLPLPSQRNYKPASYHPPPARELDREVTADDL------CQFFVTYMKNFSLPRIA 1531
Query: 782 KSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDL 841
+ A A++ A E L L ++ A+D P K+G+ + L
Sbjct: 1532 HAHLA----------------QADKYGAKDEKCLELAYLHSLAVDYP-KTGVPAAIRPRL 1574
Query: 842 KVEKFPCYMRRDESVSFESTSVLGTIYNTVK 872
+FP +M + + S +LG +Y+ VK
Sbjct: 1575 MPNEFPHFMEKARG-RYHSRKILGKLYDQVK 1604
>gi|86196450|gb|EAQ71088.1| hypothetical protein MGCH7_ch7g495 [Magnaporthe oryzae 70-15]
Length = 1952
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 157/691 (22%), Positives = 271/691 (39%), Gaps = 153/691 (22%)
Query: 227 HCHISTKGNCTFKGPYLN----QTRTHLQRELGD--DNILLVKFDEEL--GGHRSSNNW- 277
+C ++ K T YL+ +T + R + D L V+F +EL G + N+
Sbjct: 997 YCTMTRKVTVTPSTMYLSSPMVETTNRVLRHYNEHKDRFLRVQFTDELPTGRLHAPNDLG 1056
Query: 278 --NDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFID 335
++ +S+ + + GI +G R Y F F G + +++ + YF F D
Sbjct: 1057 ADDEIFSRVYRVLKNGIHIGDRHYKFLAF---GSSQMRENST------YF-------FCD 1100
Query: 336 MGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDE 395
G ++ ++ F H+R +V Y +RL S T ++ R+ + I+
Sbjct: 1101 AGD---VTCDSIRAWMGRFSHIR---NVGKYAARLGQCFSTTRSID----RVAMPWIKTI 1150
Query: 396 PCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEA 455
P +K+G + DG I + ISE+L L Y+
Sbjct: 1151 PDIEKNG-YCFTDGVGKISSLWAVVISENLKLD---YI---------------------- 1184
Query: 456 NFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDL 515
P Q R+ KG L++ + + Q I IRPS +K + D
Sbjct: 1185 ---------------PSAFQFRM----GGCKGVLVVWEDVKGQEIHIRPSQLKFETDH-- 1223
Query: 516 SDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKR 575
+ LEV++ S+ + L+R I++L+ GV F +L L +
Sbjct: 1224 ------SRLEVIRCSHFSVAS-LNRQTISVLTSLGVKNEVFESMLAEQLAKYNRAMEDAT 1276
Query: 576 NALKVSFNYGGMD-YDFTSARMILSG-ISLDEPYLQHRLSILMKEEKKSL-QAGKLPVTE 632
A+ + Y + T AR++ +G + EP++ L + K+L + +L V +
Sbjct: 1277 AAMTLLTQYVDENQMTNTLARLVKAGFMESHEPFVCTMLRLWRTWSVKTLKEKARLVVEK 1336
Query: 633 SYYLMGTVDPT---------------------GILKSNEVCIILKDGQVSWEKV-----L 666
+++G VD T G +K E+ + + DG KV L
Sbjct: 1337 GAFVLGCVDETKTLHGHFTHIPASPNQRPRLNGNMKLPEIFLQVPDGPSRDYKVITGLCL 1396
Query: 667 VYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFV 726
V RNP LH GDI V++A V +L + + F G R + +GGD DGD +FV
Sbjct: 1397 VGRNPSLHPGDIRVVQAIDVPQLRHI----RDVVVFAQTGDRDIPGMCSGGDLDGDDFFV 1452
Query: 727 SRNPELL-----KHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNA 781
+ LL +++K + ++ L D + F ++ P A
Sbjct: 1453 LWDERLLPLPSQRNYKPASYHPPPARELDREVTADDL------CQFFVTYMKNFSLPRIA 1506
Query: 782 KSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDL 841
+ A A++ A E L L ++ A+D P K+G+ + L
Sbjct: 1507 HAHLA----------------QADKYGAKDEKCLELAYLHSLAVDYP-KTGVPAAIRPRL 1549
Query: 842 KVEKFPCYMRRDESVSFESTSVLGTIYNTVK 872
+FP +M + + S +LG +Y+ VK
Sbjct: 1550 MPNEFPHFMEKARG-RYHSRKILGKLYDQVK 1579
>gi|389628880|ref|XP_003712093.1| RNA-dependent RNA polymerase [Magnaporthe oryzae 70-15]
gi|351644425|gb|EHA52286.1| RNA-dependent RNA polymerase [Magnaporthe oryzae 70-15]
Length = 1292
Score = 90.5 bits (223), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 132/556 (23%), Positives = 217/556 (39%), Gaps = 134/556 (24%)
Query: 212 RRMSLKWDSGKTHMYHCHISTKGNCTFKGPYL-NQTRTHLQRELGDDNILLVKF-DEELG 269
R L+ +S TH+Y + T T GP + N+ R + D + V+F DE
Sbjct: 441 RTGQLRQNSNLTHIYRV-VVTPTRITLHGPEIENKNRVLRKYPKHQDCFVRVQFCDENTQ 499
Query: 270 GHRSSN--NWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVR 327
R S +++ YS++ ++ GI + R Y+F F S S ++ +
Sbjct: 500 DIRFSPKISYDRVYSRFLDVLNRGIQIAGRVYNFLGF------------SHSSLRTHSAW 547
Query: 328 MESSAFIDMGYQYILSG--KTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFS 385
S+ F D G Q+ + K++ E ++ A +R+ S+T + VD
Sbjct: 548 F-SAPFFDQGSQHTHASIIKSLGE-------FSSIQCPAKCAARIGQAFSETPSV-VDLR 598
Query: 386 RINIERIEDEP-CRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDST 444
++E + P ++DG+ V+ DG I I E++ +K
Sbjct: 599 DHDVEVVTHFPDITNRDGSRVFSDGVGKISESMMHIIWENIPMK---------------- 642
Query: 445 ERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRP 504
P QVR + G KG L L+ L + R
Sbjct: 643 -----------------------KNAPTCFQVR--WGG--AKGMLALDMTLKGTKVCFRD 675
Query: 505 SMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNAL 564
SM K ++D + LE+ + ++P L+R +I +L G +F+ + L
Sbjct: 676 SMTKFESD-------DVHQLEICDSGSKPIPLVLNRQMIKILEDMGTDRSWFMRLQSYRL 728
Query: 565 DDARGVFSNKRN------------ALKVS--FNYG---GMDY---DFTSARMILSGISLD 604
+ R + ++ N A+K+ N+ GMDY DF R ++ + L
Sbjct: 729 QELRSITASAYNTWHFLDAQNVGQAIKLGKFINFADKHGMDYRTDDFM--RSVVEAVVLR 786
Query: 605 E-PYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIIL-------- 655
E L+H+ ++PV L G +D TG L+ EV I
Sbjct: 787 ELRLLKHK--------------ARIPVKYGKTLFGIIDETGYLREGEVVISFGFSQTGED 832
Query: 656 -----KDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSL 710
+DGQ+ V+V R+P LH GDI + K V + I F +G R L
Sbjct: 833 QPTPPQDGQI----VIVTRSPALHPGDIQIAKQV-VPPPSHPLSHHINCIIFSQHGQRDL 887
Query: 711 ADEIAGGDFDGDMYFV 726
+++GGD DGD+Y V
Sbjct: 888 PSQLSGGDLDGDIYNV 903
>gi|429863873|gb|ELA38280.1| RNA-dependent RNA polymerase [Colletotrichum gloeosporioides Nara
gc5]
Length = 1308
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 146/647 (22%), Positives = 259/647 (40%), Gaps = 130/647 (20%)
Query: 232 TKGNCTFKGPYLNQTRTHLQRELGD-DNILLVKFDEELGGHRSSN---NWNDSYSKYNEI 287
T T GP + L++ D + V+F +E G N N+ D + +Y +
Sbjct: 446 TPTRVTLHGPEMEPLNRILRKHRNHTDYFMRVQFCDEDGTDLWFNPRVNYEDVFERYKNV 505
Query: 288 AREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMG----YQYILS 343
+GI V R Y F F S S ++ + + D G Y++I+
Sbjct: 506 LNKGIQVAGRIYQFLGF------------SHSSLRSHAAWFMAPFVDDSGEMQLYRHII- 552
Query: 344 GKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGN 403
K++ + ++ + + + + S +S T + D S NI I+
Sbjct: 553 -KSLGDFEHIQIPAKCAARIGQTFSETPAFISLT---DSDISAWNIPDIKSS-------- 600
Query: 404 VVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVART 463
G+ + +DG G IS R+ LE + + R
Sbjct: 601 ---IGGDDRVFSDGVGTIS---------------------------REALELIWPRLPRG 630
Query: 464 ESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIR-PSMIKVKADRDLSDGQTFN 522
P +Q+R + G VKG L L+ +LP + + IR SM K + Q
Sbjct: 631 SLI----PTCLQIR--WGG--VKGMLSLDTRLPGRVMCIRRESMEKFPS-------QDTE 675
Query: 523 SLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSF 582
+LE+ +++P K L+R +I +L GV FFL + + LD R V ++ N
Sbjct: 676 NLEICGGASKPLKLVLNRQMIKILEDLGVRNDFFLRLQKTELDRLRAVTADAYNTGTFLH 735
Query: 583 NYG-GMDYDFTSARMILSGISLD---EPYLQHRL-SILMKEEKKSLQAGKLPVTESYYLM 637
G G++ S L +D + +L+ + +++++E + ++PV + +
Sbjct: 736 MQGIGLNCFLPSFIKSLDKYGIDYRRDDFLRTVVQNVVLQELRLLKHKARIPVPKGVTVF 795
Query: 638 GTVDPTGILKSNEVCIILK----------DGQVSWEKVLVYRNPGLHFGDIHVLK----- 682
G +D TG L+ EV I DG + VLV R+P LH GDI ++K
Sbjct: 796 GVMDETGFLREGEVYIAYDTYRRPGRTSIDGSLRDGPVLVTRSPALHPGDIQLVKMRTPP 855
Query: 683 -ATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKH--FKES 739
++ L + + S++ G R L +++GGD DGD+Y + + + + +K +
Sbjct: 856 AGHPLRNLRNCIAFSQF-------GRRDLPSQLSGGDLDGDLYNIIWDRDAMPKVTYKAA 908
Query: 740 ERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTL 799
+ T L R ++ E + F F+ + DC + R L +
Sbjct: 909 DYPRVTPAALG---RTVE---REDMANWFVDFMQS------------DCLGLIATRHLVV 950
Query: 800 GDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKF 846
D+ + + + L L ++ A+D K+GI V+ E K +F
Sbjct: 951 SDQ--DPNGTLGNDCLTLAGLHSTAVDF-SKTGIPVDTKEIPKAPRF 994
>gi|426197722|gb|EKV47649.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
Length = 1202
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 144/642 (22%), Positives = 252/642 (39%), Gaps = 101/642 (15%)
Query: 209 QEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQR--ELGDDNILLVKF-D 265
Q+D + D+ H IS + GP+++++ L+R + +N L V+F D
Sbjct: 384 QDDIESEILNDASYYHSLQVTISPT-SIFLNGPFIDKSNRVLRRYSKANHENFLRVEFRD 442
Query: 266 EELGGHRSSNNWNDS---YSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVK 322
E +RS + +D + EG+++ R + F + E
Sbjct: 443 ENNLQYRSDKDIDDEEFVRRRLGHFMHEGLVIAGRRFRFLAYSQSALREHS--------- 493
Query: 323 CYFVRMESSAFIDMGYQYILSGKTVHEARYM--FMHVRTVSSV-ANYMSRLSLILSKTMK 379
+FV+ AF D + + +GK + + RT+ A + +R+S S T
Sbjct: 494 VWFVK----AFRDPKHGIVNAGKIIESLGNFRDLAYDRTLGYCPARFGARVSQAFSATDA 549
Query: 380 LEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCT 439
V+ I I+R ++ DG+ TDG+G +S DLA + +++
Sbjct: 550 AIVEVDEILIKR-----------DITTPDGQ-YTFTDGSGDMSADLARDIWHRIARKRDR 597
Query: 440 NDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQT 499
ND I R E G ++ V NG+ T
Sbjct: 598 NDFPRAYQI-------------RHEGSKG----MISVDYRLNGS--------------NT 626
Query: 500 IQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDI 559
+ +R SMIK D N +EV + +QP YL+R LI +L GV F
Sbjct: 627 LSLRDSMIKF-------DAPESNEIEVSRAIDQPTPYYLNRFLIMILEGLGVKHEVFQGF 679
Query: 560 LRNALDDARGVFSNKRNALKVSFNYG-GMDYDFTSARMILSGISLD----EPYLQHRLSI 614
A+ + + +A + +G G+ + S LS + LD +P L +
Sbjct: 680 QDEAVRGTQQAMEHLSSASHLLQAHGLGLTFKIPSTMANLSKLDLDNLVRDPLFDQPLRL 739
Query: 615 LMKEEKKSLQ-AGKLPVTESYYLMGTVDPTGILKSNEVCIILKD---GQVSWE-KVLVYR 669
+ + L+ ++P+ ++ L+G D G LK++EV + +K G E VL+ R
Sbjct: 740 GVYHVLRDLKYKARIPIPNAWTLVGVADTHGYLKADEVFVCIKHPEKGSFYLEGPVLISR 799
Query: 670 NPGLHFGDIHVLKAT-YVKELEDFVGTS-KYAIFFPCNGPRSLADEIAGGDFDGDMYFVS 727
+P +H GD+ + A ++ F + F G R L + GGD DGD Y +
Sbjct: 800 SPTIHPGDVQLAMAIGGPRQGSPFAREPLPNTVVFSVKGDRPLPSCLGGGDLDGDPYNII 859
Query: 728 RNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAAD 787
P + E+ + +A K+L ++ + F + ++ S+ + A
Sbjct: 860 --PLRDHPYFTPEKTYEPANYEAAEKQLTEWPCTMKDVADFVM----QYIVSDVIGVVAT 913
Query: 788 CWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPK 829
W + D + K ++ L L ++ DA+D PK
Sbjct: 914 NWLIIAD----------QRKDITDDDCLVLAKLHSDAVDYPK 945
>gi|440476070|gb|ELQ44707.1| RNA-dependent rna polymerase [Magnaporthe oryzae Y34]
gi|440486893|gb|ELQ66719.1| RNA-dependent rna polymerase [Magnaporthe oryzae P131]
Length = 1338
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 125/551 (22%), Positives = 214/551 (38%), Gaps = 124/551 (22%)
Query: 212 RRMSLKWDSGKTHMYHCHISTKGNCTFKGPYL-NQTRTHLQRELGDDNILLVKF-DEELG 269
R L+ +S TH+Y + T T GP + N+ R + D + V+F DE
Sbjct: 441 RTGQLRQNSNLTHIYRV-VVTPTRITLHGPEIENKNRVLRKYPKHQDCFVRVQFCDENTQ 499
Query: 270 GHRSSN--NWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVR 327
R S +++ YS++ ++ GI + R Y+F F S S ++ +
Sbjct: 500 DIRFSPKISYDRVYSRFLDVLNRGIQIAGRVYNFLGF------------SHSSLRTHSAW 547
Query: 328 MESSAFIDMGYQYILSG--KTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFS 385
S+ F D G Q+ + K++ E ++ A +R+ S+T + VD
Sbjct: 548 F-SAPFFDQGSQHTHASIIKSLGE-------FSSIQCPAKCAARIGQAFSETPSV-VDLR 598
Query: 386 RINIERIEDEP-CRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDST 444
++E + P ++DG+ V+ DG I I E++ +K
Sbjct: 599 DHDVEVVTHFPDITNRDGSRVFSDGVGKISESMMHIIWENIPMK---------------- 642
Query: 445 ERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRP 504
P QVR + G KG L L+ L + R
Sbjct: 643 -----------------------KNAPTCFQVR--WGG--AKGMLALDMTLKGTKVCFRD 675
Query: 505 SMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNAL 564
SM K ++D + LE+ + ++P L+R +I +L G +F+ + L
Sbjct: 676 SMTKFESD-------DVHQLEICDSGSKPIPLVLNRQMIKILEDMGTDRSWFMRLQSYRL 728
Query: 565 DDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISL-------DEPYLQHRL----- 612
+ R + ++ N + F A+ + I L D+ + +R
Sbjct: 729 QELRSITASAYNT-----------WHFLDAQNVGQAIKLGKFINFADKHGMDYRTDDFMR 777
Query: 613 ----SILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIIL------------- 655
+++++E + ++PV L G +D TG L+ EV I
Sbjct: 778 SVVEAVVLRELRLLKHKARIPVKYGKTLFGIIDETGYLREGEVVISFGFSQTGEDQPTPP 837
Query: 656 KDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIA 715
+DGQ+ V+V R+P LH GDI + K V + I F +G R L +++
Sbjct: 838 QDGQI----VIVTRSPALHPGDIQIAKQV-VPPPSHPLSHHINCIIFSQHGQRDLPSQLS 892
Query: 716 GGDFDGDMYFV 726
GGD DGD+Y V
Sbjct: 893 GGDLDGDIYNV 903
>gi|121716158|ref|XP_001275688.1| rna-dependent rna polymerase [Aspergillus clavatus NRRL 1]
gi|119403845|gb|EAW14262.1| rna-dependent rna polymerase [Aspergillus clavatus NRRL 1]
Length = 1203
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 117/524 (22%), Positives = 210/524 (40%), Gaps = 102/524 (19%)
Query: 225 MYHCHISTKGNCTFKGPYLNQTRTHLQR-ELGDDNILLVKFDEELGG--HRSSN-NWNDS 280
+ H + T T GP L+R D + V+F +E GG H SS +++
Sbjct: 423 LIHKVMITPSRITLHGPEPEPFNRILRRFPNHHDYFIRVQFCDEQGGDLHFSSRVTYDEV 482
Query: 281 YSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQY 340
+S++ + GI + R Y+F + S S ++ + V + I +
Sbjct: 483 FSRFKNVLTNGIQIAGRTYYFLGW------------SHSSLRSHSVWASAVCIIKALGDF 530
Query: 341 ILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKT-MKLEVDFSRINIERIEDEPCRD 399
++S A +R+ S+T + V+ + I IE + D
Sbjct: 531 -----------------SKITSPARCAARIGQAFSETPFAIPVEDNTITIEEVPD----- 568
Query: 400 KDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSD 459
+ KDG+ +DG G +S ++ LE +S+
Sbjct: 569 ----LASKDGQRFF-SDGVGSLSLNV---------------------------LEMIWSN 596
Query: 460 VARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQ 519
+ + P Q+RL KG + ++ +L I+IRPSMIK + +
Sbjct: 597 IPPKKGK----PTGFQIRL----GGAKGMIAIDSRLTGSVIRIRPSMIKFQGE------- 641
Query: 520 TFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNAL- 578
LE+ +++P L+R +I +L GV E +F + L R + ++ +N
Sbjct: 642 -MRDLEICDMASKPIPLVLNRQMIKILEDMGVAEDWFFRLQNQELTYLRSITASAQNTAV 700
Query: 579 ----KVSFNYGGMDYDFTSARMILSGISLDEPYLQHRL-SILMKEEKKSLQAGKLPVTES 633
+ + G+ F I+ P+L+ + +++++E + ++PV +
Sbjct: 701 FIKRQAVGDCIGLFRLFRQCHQW--KINYKVPFLRSLVEAVILRELRLLKHKARIPVDKG 758
Query: 634 YYLMGTVDPTGILKSNEVCIILKDGQ------VSWEKVLVYRNPGLHFGDIHVLKATYVK 687
L G +D T L+ NEV + Q + VLV R+P L+ GDI + T
Sbjct: 759 ITLFGIIDETEYLQENEVYVTFNTIQGRPVAPPTAGPVLVTRSPALYDGDIQICLNTVPP 818
Query: 688 ELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPE 731
E + + + I F G R L +++GGD DGD+Y + +PE
Sbjct: 819 E-DHPLRRHRNCIVFSAKGDRDLPSQLSGGDLDGDIYNIIWDPE 861
>gi|301106324|ref|XP_002902245.1| RNA-dependent RNA Polymerase1 (RDR1) [Phytophthora infestans T30-4]
gi|262098865|gb|EEY56917.1| RNA-dependent RNA Polymerase1 (RDR1) [Phytophthora infestans T30-4]
Length = 2680
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 117/507 (23%), Positives = 211/507 (41%), Gaps = 90/507 (17%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPP-----QTIQIRPSMIKVKADRDLSDGQTFNSLE 525
P QVRL KG L+++ P + + +R SM K ++ + LE
Sbjct: 1278 PSAFQVRL----GGAKGVLVVSDLGNPDISREEAVVLRKSMSKFSSNHTM--------LE 1325
Query: 526 VVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNA---LKVSF 582
+V + + + YL+R + +L+ G+ E F+++ L D R + ++ A LK
Sbjct: 1326 IVACAGKS-EAYLTRQSVLILNDLGINEDVFMEMQEEFLSDLRSLIASDSGAYFGLKAVL 1384
Query: 583 NYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDP 642
+ R + I +DE +I ++ ++P+ + LMG D
Sbjct: 1385 PPSVIWRIDVLVRKLEVKILVDEYLSSLARTIYHYRLANTVMRARIPIAKGRTLMGVADF 1444
Query: 643 TGILKSNEVCIILKD-----GQVSWE-----KVLVYRNPGLHFGDIHVLKA-----TYVK 687
TG L+ EV + D G S+ V V+R+P H GDI VL+ ++
Sbjct: 1445 TGTLEYGEVFVQYSDTDEETGNDSYVLLDGIDVAVHRSPCHHPGDIRVLRCRTDVPPQLR 1504
Query: 688 ELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSK 747
+L+D I FP GPR DE GGD DGDM+ V + L+ + M+ +
Sbjct: 1505 QLKD-------CIVFPSKGPRPHPDECTGGDLDGDMFVVIWDERLIPSRTQVHEPMAFDE 1557
Query: 748 NLSANKR--------------LIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVM 793
+ + LIDF + ++ ++ +A++ A+
Sbjct: 1558 DNGGDTSPRGEEYHQSTDDAGLIDFYIHSIQDDIL--------------GIASNAHLALC 1603
Query: 794 DRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRD 853
D + D S ++ A + + R+ + D+L A K +E+ +L + +P +M+
Sbjct: 1604 D---SSNDGSLDDNAKI---LARICSKQVDSLRAEK----DLEIVRNLAPKSYPDFMQNK 1653
Query: 854 ESVSFESTSVLGTIYNTVKSYEAVDRSVTE-IWKLPCFDDGVPEACMTKW----KGYYDQ 908
E S+ S +LG +Y K+ D ++T+ + ++P DD A T + Y Q
Sbjct: 1654 EKPSYPSKKILGKMYRRCKAI--FDTTMTKSVSRMPIRDDHFLVAGYTDYVEQANLLYRQ 1711
Query: 909 YRWEMKEAI--DKCTVEREEAAELVIE 933
Y+ ++ + E E A +++E
Sbjct: 1712 YKLRLRALLLMSGAQTEAELATGMIVE 1738
>gi|315047102|ref|XP_003172926.1| RNA-dependent RNA polymerase 1 [Arthroderma gypseum CBS 118893]
gi|311343312|gb|EFR02515.1| RNA-dependent RNA polymerase 1 [Arthroderma gypseum CBS 118893]
Length = 1455
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 175/809 (21%), Positives = 298/809 (36%), Gaps = 157/809 (19%)
Query: 121 KQSPVADQQPRGSPMSSISHAMRHRASIPQYVALGELEFRKAFLILSY-----IGENSLE 175
KQ P AD R S +HA +H +S+ L E E+ ++ Y I L
Sbjct: 359 KQPPTADLAWRWIDPPS-THASKHTSSLED---LAENEYTHISYVVRYQLEVCISHGLLS 414
Query: 176 EVITADEIRGMRDLQMARFESEVWEKLGRKNISQED--RRMSLKWDSGKTH----MYHCH 229
E E + R ++ E + + + D + +++ SG T+ Y C+
Sbjct: 415 EYAIDKEFAKKLESLGERDAKDLLEYVAHEKVVYHDPMKIFDIQFFSGVTNRRIPKYCCY 474
Query: 230 IS----TKGNCTFKGPYLNQTRTHLQRELG-DDNILLVKFDEELGGHRSSNNWNDS---- 280
+ T F P ++ + ++ + D L V+F +E R ++ +N+
Sbjct: 475 MRSATVTPSTIYFHTPTVDTSNRVIRHYIEYADRFLRVRFTDEKYEGRINSTYNNCMDEV 534
Query: 281 YSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQY 340
+++ G++VG R Y F F + S F + G +
Sbjct: 535 FTRVKRTMTNGVIVGDRHYEFLAFGN------------------------SQFREHGAYF 570
Query: 341 I--LSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCR 398
L T R H + VA + +RL S T V + I I++
Sbjct: 571 FASLPNLTASNIRAWMGHFSDIKIVAKHAARLGQCFSSTKA--VTGCPVTIREIDE---- 624
Query: 399 DKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFS 458
+ ++G +DG G IS+ LA T +K K ++
Sbjct: 625 ------IERNGYTF--SDGVGRISKFLAQMIMTE-FKLKTPSE----------------- 658
Query: 459 DVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDG 518
EPP + Q RL KG L ++ + + + I+ S K A
Sbjct: 659 ----------EPPSVFQFRL----GGCKGILTVSPEAQRREVHIKKSQYKFAA------- 697
Query: 519 QTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNAL 578
N LE+++ S Q YL+R LI +LS GV + F+ LR L+D +++ A+
Sbjct: 698 -VHNGLEIIRWS-QFAAAYLNRQLIVVLSALGVTDEIFIKKLRLMLEDMEQAMTSETKAM 755
Query: 579 KV-SFNYGGMDYDFTSARMILSGI-SLDEPYLQHRLSILMKEEKKSL-QAGKLPVTESYY 635
+ A+M+ G +P++ L + + K L + K+ +
Sbjct: 756 SLLQKQVDPNQMTLLLAQMVHDGFQGTSDPFVTSLLELWRAWQIKYLKEKAKICIDGGAC 815
Query: 636 LMGTVDPTGILKS--------------------NEVCIILKDGQVSWE------KVLVYR 669
L G +D T LK E+ + + D + ++ R
Sbjct: 816 LFGCLDETATLKGYHEKTRPSIDATYEERLGYLPEIFVQVFDAEAERNYKIIEGPCILAR 875
Query: 670 NPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRN 729
NP LH GDI V++A V L K I F G R + +GGD DGD Y V +
Sbjct: 876 NPSLHPGDIRVVRAVNVPALHHL----KDVIVFSQTGDRDVPSTCSGGDLDGDDYIVIWD 931
Query: 730 PELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCW 789
+L+ K+ R +A D ++ ++ S F ++ P A + A
Sbjct: 932 QDLVPLPKDWFRQPMDYTASNAQSLTRDVTVNDITS-FFVTYMKNDRLPQIAHAHLA--- 987
Query: 790 QAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCY 849
F ++ +K ++ L + Y+ KSGI + DL K+P +
Sbjct: 988 ------FADFLEDGVNDKRCVQLAQLHSAAVDYN------KSGIPANMTRDLVPRKWPHF 1035
Query: 850 MRRD---ESVSFESTSVLGTIYNTVKSYE 875
M + + + S +LG IY+ V+ E
Sbjct: 1036 MEKKYKPKEAQYHSKKILGQIYDIVERVE 1064
>gi|409080807|gb|EKM81167.1| hypothetical protein AGABI1DRAFT_56570 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1201
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 144/642 (22%), Positives = 253/642 (39%), Gaps = 101/642 (15%)
Query: 209 QEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQR--ELGDDNILLVKF-D 265
Q+D + D+ H IS + GP+++++ L+R + +N L V+F D
Sbjct: 382 QDDIESEILNDASYYHSLQVTISPT-SIFLNGPFIDKSNRVLRRYSKANHENFLRVEFRD 440
Query: 266 EELGGHRSSNNWNDS---YSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVK 322
E +RS + +D + EG+++ R + F + E
Sbjct: 441 ENNLQYRSDKDIDDEEFVRRRLGHFMHEGLVIAGRRFRFLAYSQSALREHS--------- 491
Query: 323 CYFVRMESSAFIDMGYQYILSGKTVHEARYM--FMHVRTVSSV-ANYMSRLSLILSKTMK 379
+FV+ AF D + + +GK + + RT+ A + +R+S S T
Sbjct: 492 VWFVK----AFRDPKHGIVNAGKIIESLGNFRDLAYDRTLGYCPARFGARVSQAFSATDA 547
Query: 380 LEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCT 439
V+ I I+R ++ DG+ TDG+G +S DLA + +++
Sbjct: 548 AIVEVDEILIKR-----------DITTPDGQ-YTFTDGSGDMSADLARDIWHRIARKRDR 595
Query: 440 NDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQT 499
ND I R E G ++ V NG+ T
Sbjct: 596 NDFPRAYQI-------------RHEGSKG----MISVDYRLNGS--------------NT 624
Query: 500 IQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDI 559
+ +R SMIK D N +EV + +QP YL+R LI +L GV F
Sbjct: 625 LSLRDSMIKF-------DAPESNEIEVSRAIDQPTPYYLNRFLIMILEGLGVKHEVFQGF 677
Query: 560 LRNALDDARGVFSNKRNALKVSFNYG-GMDYDFTSARMILSGISLD----EPYLQHRLSI 614
A+ + + +A + +G G+ + S LS + LD +P L +
Sbjct: 678 QDEAVRGTQQAMEHLSSASHLLQAHGLGLTFKIPSTMANLSKLDLDNLARDPLFDQPLRL 737
Query: 615 LMKEEKKSLQ-AGKLPVTESYYLMGTVDPTGILKSNEVCIILKD---GQVSWE-KVLVYR 669
+ + L+ ++P+ ++ L+G D G LK++EV + +K G E VL+ R
Sbjct: 738 GVYHVLRDLKYKARIPIPNAWTLVGVADTHGYLKADEVFVCIKHPEKGSFYLEGPVLISR 797
Query: 670 NPGLHFGDIHVLKAT-YVKELEDFVGTS-KYAIFFPCNGPRSLADEIAGGDFDGDMYFVS 727
+P +H GD+ + A ++ F + F G R L + GGD DGD Y +
Sbjct: 798 SPTIHPGDVQLAMAIGGPRQGSPFAREPLPNTVVFSVKGDRPLPSCLGGGDLDGDPYNII 857
Query: 728 RNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAAD 787
P + E+ + +A K+L ++ + F + ++ S+ + A
Sbjct: 858 --PLRDHPYFTPEKTYEPANYEAAEKQLTEWPCTMKDVADFVM----QYIVSDVIGVVAT 911
Query: 788 CWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPK 829
W + D+ + D ++ L L ++ DA+D PK
Sbjct: 912 NWLIIADQRQDITD----------DDCLVLAKLHSDAVDYPK 943
>gi|357450885|ref|XP_003595719.1| hypothetical protein MTR_2g059620 [Medicago truncatula]
gi|355484767|gb|AES65970.1| hypothetical protein MTR_2g059620 [Medicago truncatula]
Length = 188
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 79/126 (62%), Gaps = 8/126 (6%)
Query: 518 GQTFNSLEVVKTSNQP-------RKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGV 570
G F + + +N P ++YLS+ LIALLSYGGVP FF D+L+ L+D +
Sbjct: 36 GGGFMPSQTTQGANSPFTPSKGLNRSYLSKYLIALLSYGGVPNEFFTDVLKRNLEDVDHI 95
Query: 571 FSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPV 630
++ K AL+ S N+G MD F +A MIL GI LDEP+L++ L+ L+K EKK L GKL +
Sbjct: 96 YTKKCTALRASVNHGEMD-GFNAAAMILCGIPLDEPFLRYHLTKLVKVEKKKLSQGKLYL 154
Query: 631 TESYYL 636
+ +Y+
Sbjct: 155 EDCFYI 160
>gi|66802840|ref|XP_635263.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
gi|60463423|gb|EAL61608.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
Length = 2403
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 123/485 (25%), Positives = 205/485 (42%), Gaps = 82/485 (16%)
Query: 475 QVRLFYNGTAVKGTLLLNKKLP-PQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQP 533
QVR+ N KG L++N + P P I IRPSM+K + G +LE+ S
Sbjct: 1388 QVRIGGN----KGMLVVNNQAPDPSGIYIRPSMVKFNP---IVCGDEHRTLEICSVSTTS 1440
Query: 534 RKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTS 593
R L+R +I+LLS G + F + + L+ + N NA K + D
Sbjct: 1441 R-CKLNRQVISLLSTLGTQDNVFFALQDHYLNQVAQIV-NDTNASKQAIVEFFPD----- 1493
Query: 594 ARMILSGISLDEPYLQHRLSILMKEEKKSLQAG-KLPVTESYYLMGTVDPTGILKSNEVC 652
I G +PY++ L L K + + +Q + + +S L+G DPT L N V
Sbjct: 1494 ---ITEGELYQDPYIRRILISLYKLKMERIQQKCHIEIKDSRMLLGVCDPTNSLPPNTVF 1550
Query: 653 IILKDGQV------SWEKV-----LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIF 701
+ L++ +EKV +V +NP H GD+ LKA L + +
Sbjct: 1551 VQLEEEDEDDDDGRKYEKVIEGLVMVIKNPCTHPGDVRYLKAVDNLRLRHL----RNVLV 1606
Query: 702 FPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLID---- 757
F G EI+G D DGD YF + L+ + +SE + +S N + +
Sbjct: 1607 FSTKGDVPNFKEISGSDLDGDRYFFCYDKSLIGNRSKSETAYLGDETVSNNDKKANVFND 1666
Query: 758 -FSLEELES------ELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAM 810
F+L + S EL K++ N+ +D + A + + + E +E
Sbjct: 1667 PFALSSMYSTNVERQELGKMY--------NSHLAISDLFGANHEFSIQISKECFKE---- 1714
Query: 811 KENMLRLINIYYDALDAPKKSGIKVEVPED----LKVEKFPCYMRRDES--VSFESTSVL 864
+D P K+GI +P++ LK + +P YM+R+ S V ++S +++
Sbjct: 1715 --------------IDYP-KTGIHGTIPKEANVWLKTKGYPHYMQRENSTRVYYQSKTIM 1759
Query: 865 GTIYNTVKSYEAVDRSVTEIW--KLPCFDDGVPEACMTKWKGYYDQYRWEMKEAIDKCTV 922
G +Y+ + + + I K DD E + K Y QY+ ++ + +
Sbjct: 1760 GKMYDQIDQLVYIGDFLPNISLDKSNLVDD--YEIYLNSAKILYSQYKLQVHSLLRHYSA 1817
Query: 923 EREEA 927
E EE+
Sbjct: 1818 ESEES 1822
>gi|342879234|gb|EGU80489.1| hypothetical protein FOXB_08949 [Fusarium oxysporum Fo5176]
Length = 1391
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 151/672 (22%), Positives = 251/672 (37%), Gaps = 147/672 (21%)
Query: 256 DDNILLVKFDEELGGHRSSNNWNDSYSKYNEIAR---EGILVGLRCYHFFVFKDGGKEEK 312
+D L ++F EE+ R + N + + Y + R +G+ +G R Y F F +
Sbjct: 507 EDRFLKIQFTEEMEKGRIAVNKDQNDEIYKRVLRSMYKGVRIGDRFYEFLAFGNSQ---- 562
Query: 313 KKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSL 372
+R+ + F LS + F H++ V A Y +RL
Sbjct: 563 -------------LRVNGAYFFCPTEH--LSCDDIRRWMGQFSHIKVV---AKYAARLGQ 604
Query: 373 ILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTY 432
S T +L I+ + P +++G + DG I + ISED+ L
Sbjct: 605 CFSTTRELHA----ISAPATQQIPDIERNG-YCFTDGIGKISSFLAQLISEDMILDV--- 656
Query: 433 VYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLN 492
VAR P Q R+ KG L +
Sbjct: 657 ---------------------------VAR--------PSAFQFRM----GGCKGVLAI- 676
Query: 493 KKLPPQT----IQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSY 548
P T + IR S K ++D LE+++++ T L+R I +L
Sbjct: 677 --WPNDTKVMEVHIRESQKKFESDS--------KGLEIIRSAAMATAT-LNRQTITILEC 725
Query: 549 GGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYL 608
GVP F ++L + L + A+ + + + R L EP++
Sbjct: 726 LGVPIASFTNLLDHQLRSYELAMEDNDVAIDMLTKFVDENNISDLLRAGFKTDDLQEPFV 785
Query: 609 QHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKSN----------------EV 651
+ L + K L + ++ V +S +++G VD TG L+ + ++
Sbjct: 786 VNVLKLWRSWSLKLLKEKARIQVQKSAFVLGCVDETGTLRGHSSETEGSEDKATDRLPQI 845
Query: 652 CIILKDG------QVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCN 705
I L D QV ++ RNP LH GDI V++A L + + FP
Sbjct: 846 FIQLSDATHYNKTQVISGVCIIGRNPSLHPGDIRVVEAVDCPALHHL----RDVVVFPST 901
Query: 706 GPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRL---IDFSLEE 762
G + + + ++GGD DGD +FV P L+ RW N A K + D ++++
Sbjct: 902 GDQPVPNMLSGGDLDGDDFFVIWEPTLI-----PRRWNYPPMNYLAPKPIELDRDVTVDD 956
Query: 763 LESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYY 822
L + K N + P A S A +++ M L L ++
Sbjct: 957 LRNFFVKYLKNDKL-PLIATSHLA----------------FSDDLGPMSPKCLELAELHS 999
Query: 823 DALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSVT 882
A+D P K+G + D + K+P +M + S+ S LG I++ VK +
Sbjct: 1000 KAVDYP-KTGDPAVLRRDQQPRKWPHFMEKKN--SYTSRKALGVIFDKVKGKQV---KFD 1053
Query: 883 EIWKLPCFDDGV 894
IW P FD +
Sbjct: 1054 PIWDSP-FDQRI 1064
>gi|407917163|gb|EKG10484.1| RNA-dependent RNA polymerase eukaryotic-type [Macrophomina
phaseolina MS6]
Length = 1221
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 96/381 (25%), Positives = 167/381 (43%), Gaps = 46/381 (12%)
Query: 363 VANYMSRLSLILSK-TMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFI 421
+A ++ +LSLI ++ +K DFS+I + G+A T GT +
Sbjct: 525 MAPFVQKLSLIAAQEVIKGLGDFSKIR-----------SPAKCAARIGQAFSDTSGTVTV 573
Query: 422 SEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYN 481
+E++ +K V ++ I K L+ + + + G+ P +Q+R
Sbjct: 574 NEEI-IKMIDDVRNDRGHIFSDGVGKISYKLLKRVWKEYQQAR---GQRPTCLQIRF--- 626
Query: 482 GTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRN 541
KG + L+ +LP + + +RPSM+K T+N +E+ + +P YL+R
Sbjct: 627 -GGAKGVVSLDDRLPGEQLVLRPSMVK------FYGAGTWN-IEICGANFRPLPMYLNRQ 678
Query: 542 LIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILS-- 599
I +L GVP FLD+ ++ R + + NA +F T +L
Sbjct: 679 FIKILEDLGVPAQVFLDLQSAMVEQLRRITKSPVNA--ATFLEHARVGQATRMPHLLRML 736
Query: 600 ---GISLDE-PYLQHRLSILMKEEKKSLQA-GKLPVTESYYLMGTVDPTGILKSNEV-CI 653
G S +E +L H + I + + ++ ++ V L G +D TG L +E+ C+
Sbjct: 737 DELGFSFNEDEFLSHVVEIAALSQLRDIKHRSRIQVDRGVTLYGIMDETGFLGEDEIYCV 796
Query: 654 ILKDGQ--------VSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCN 705
I + G +S +V+V R+P +H GD+ +A V S + F
Sbjct: 797 IERIGDNGRPKRTVLSGGEVIVTRSPAMHPGDVQKARAVDVPPDSPLQALSN-VVVFSSK 855
Query: 706 GPRSLADEIAGGDFDGDMYFV 726
G R L +++GGD DGD+Y V
Sbjct: 856 GQRDLPSQLSGGDLDGDLYNV 876
>gi|391864263|gb|EIT73559.1| RNA-directed RNA polymerase QDE-1 [Aspergillus oryzae 3.042]
Length = 1188
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 141/646 (21%), Positives = 252/646 (39%), Gaps = 135/646 (20%)
Query: 232 TKGNCTFKGPYLN-QTRTHLQRELGDDNILLVKFDEELGGHRSSN---NWNDSYSKYNEI 287
T T GP + Q R + + + V+F +E G N ++ D + ++ +I
Sbjct: 403 TPTRITLHGPEMEPQNRILRKFPNHHEYFIRVQFCDENGEDLLFNANVDYKDIFGRFKDI 462
Query: 288 AREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTV 347
GI + R Y+F F + +F SS F+D ++ + ++
Sbjct: 463 MTRGIQIAGRTYNFLGFSHSSLRSRA---------VWF----SSPFVD-DNGHMQTYFSI 508
Query: 348 HEARYMFMHVRTVSSVANYMSRLSLILSKT-MKLEVDFSRINIERIEDEPCRDKDGNVVY 406
A F H+ +S A +R+ ++T + ++ + + I D DG+ V+
Sbjct: 509 VSAIGKFSHI---TSPARCAARIGQAFTETPFMVPLEKHGVLVSTIPD--LTSPDGSRVF 563
Query: 407 KDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESH 466
DG I + I D+ LK N
Sbjct: 564 SDGVGAISREVVASIWADIPLK-------------------------RGN---------- 588
Query: 467 YGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEV 526
P Q+RL KG L + +L IQIRPSMIK D + +LE+
Sbjct: 589 ----PTCFQIRL----GGAKGMLAADSRLRTAVIQIRPSMIKF-------DSEDMKNLEI 633
Query: 527 VKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGG 586
+++P L+R +I +L G + +F + L + ++ VS +
Sbjct: 634 CNMASRPYPMVLNRQVIKILEDMGASKDWFFQMQNEEL--------TRLQSITVSTDKTA 685
Query: 587 MDYDFTSARMILSGISLDEPYLQ---HRL-------------SILMKEEKKSLQAGKLPV 630
F + + I L Y Q RL +++++E + ++PV
Sbjct: 686 R---FLKDKSVAECIGLYRLYRQCYWTRLNYKKDGFLRAIVEAVVLRELRLLKHKARIPV 742
Query: 631 TESYYLMGTVDPTGILKSNEVCIILKDGQVSWE------KVLVYRNPGLHFGDIHVLKAT 684
+ L G +D TG L+ EV + + + +LV R+P LH GDI +A
Sbjct: 743 KKGMTLYGVIDETGFLQEGEVYVTFDRMEGRYAAPPGPGHILVTRSPALHCGDIQ--RAQ 800
Query: 685 YVKELEDF-VGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPEL--LKHFKESER 741
V ED + + I F G R L +++GGD DGD+Y V +PEL ++ F ++
Sbjct: 801 NVIPPEDHPLRYHRNCIVFSQKGSRDLPSKLSGGDLDGDLYHVIWDPELESVETFAPADY 860
Query: 742 WMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGD 801
TS ++ + R+ D + F F+ + D + R + + D
Sbjct: 861 PRPTSIDIGRDVRVDDM------AAFFVEFMRS------------DILGMIAIRHMVMAD 902
Query: 802 ESAEEKAAMKENMLRLI-NIYYDALDAPKKSGIKVEVPEDLKVEKF 846
++A + ++ RL+ ++ A+D K+GI V + + +V ++
Sbjct: 903 QAA---SGTRDTSCRLLAGLHSKAVDF-SKTGIPVNMEDMPRVNRY 944
>gi|296420862|ref|XP_002839987.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636195|emb|CAZ84178.1| unnamed protein product [Tuber melanosporum]
Length = 1542
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 153/693 (22%), Positives = 264/693 (38%), Gaps = 142/693 (20%)
Query: 227 HCHISTKGNCT-----FKGPYLNQT-RTHLQRELGDDNILLVKF-DEELGGHRSSNN--- 276
HC + K N T F P + T R Q D L V+F DE+ G +S +
Sbjct: 651 HCQLLRKANVTPSTVYFTTPTVEITNRVVRQYSEHIDRFLRVQFVDEKSQGRINSTDKKT 710
Query: 277 WNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDM 336
++ +++ GI +G R + F F + E YF +
Sbjct: 711 MHEVFTRVKAALDHGITIGDRKFEFLAFGNSQIREHG---------AYFFASDDH----- 756
Query: 337 GYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEP 396
LS + F +R V A + +RL S T ++ R+++ ED
Sbjct: 757 -----LSAADIRAWMGSFSEIRIV---AKHAARLGQCFSTTRA--INGVRVDVRTTED-- 804
Query: 397 CRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEAN 456
+V +G +DG G ISE LA + + R +D++ +
Sbjct: 805 -------IVNAEGYNF--SDGVGKISEFLA----------RLITTELRLRLVDKEPV--- 842
Query: 457 FSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLS 516
P Q RL KG L ++ + + IRPS +K +A
Sbjct: 843 --------------PSCFQFRL----GGRKGVLAVSPDANHREVYIRPSQLKFEA----- 879
Query: 517 DGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRN 576
N LEV++ S + L+R LI +L+ G P+ +F D L+ L +
Sbjct: 880 ---RHNILEVIRWS-KFATAALNRQLIIVLTSLGAPDHYFEDKLQFMLKSYEVAMVDPGV 935
Query: 577 ALKV-SFNYGGMDYDFTSARMILSG-ISLDEPYLQHRLSILMKEEKKSL-QAGKLPVTES 633
A+++ N + A MI +G + EP++ L + K L + K+ + E
Sbjct: 936 AVRLLCRNVDPNESTLAIAAMIRAGFMDRREPFVMSLLKLWRAWTIKYLKEKAKIMIEEG 995
Query: 634 YYLMGTVDPTGILKS--------------------NEVCIILKDGQVSWEK------VLV 667
+++G VD TG L ++ + + D E ++
Sbjct: 996 AFVLGVVDETGTLDGYYYSQDEGSTEDADNPETSLPQIFLQVTDPDRPGESRIIEGPCVI 1055
Query: 668 YRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVS 727
RNP LH GD+ + A KEL + + F G R L + ++GGD DGD Y +
Sbjct: 1056 ARNPSLHPGDVRKVMAVNAKELHHL----RNVVVFSQKGDRDLPNMLSGGDLDGDDYIII 1111
Query: 728 RNPEL---LKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSL 784
+ +L + +++ T + L+ + + D + K F+N +
Sbjct: 1112 WDKKLTSCVNNYEPMNYSAQTPRELARDVEIGDIT---------KFFVNY---------M 1153
Query: 785 AADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVE 844
D + + L D+ E + RL ++ A+D KSG +P +L+ +
Sbjct: 1154 KNDKLGTIANAHLAWADKRDE--GVKSDECFRLAILHSHAVDY-VKSGEPAIMPPELRRK 1210
Query: 845 KFPCYMRRDESVSFESTSVLGTIYNTVKSYEAV 877
FP +M + ++ S +LG +Y++V + V
Sbjct: 1211 TFPHFMEKKPEETYRSDKILGVLYDSVSKIDFV 1243
>gi|14475571|emb|CAC41975.1| putative RNA dependent RNA polymerase [Dictyostelium discoideum]
Length = 1964
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 123/485 (25%), Positives = 205/485 (42%), Gaps = 82/485 (16%)
Query: 475 QVRLFYNGTAVKGTLLLNKKLP-PQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQP 533
QVR+ N KG L++N + P P I IRPSM+K + G +LE+ S
Sbjct: 945 QVRIGGN----KGMLVVNNQAPDPSGIYIRPSMVKFNP---IVCGDEHRTLEICSVSTTS 997
Query: 534 RKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTS 593
R L+R +I+LLS G + F + + L+ + N NA K + D
Sbjct: 998 R-CKLNRQVISLLSTLGTQDNVFFALQDHYLNQVAQIV-NDTNASKQAIVEFFPD----- 1050
Query: 594 ARMILSGISLDEPYLQHRLSILMKEEKKSLQAG-KLPVTESYYLMGTVDPTGILKSNEVC 652
I G +PY++ L L K + + +Q + + +S L+G DPT L N V
Sbjct: 1051 ---ITEGELYQDPYIRRILISLYKLKMERIQQKCHIEIKDSRMLLGVCDPTNSLPPNTVF 1107
Query: 653 IILKDGQV------SWEKV-----LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIF 701
+ L++ +EKV +V +NP H GD+ LKA L + +
Sbjct: 1108 VQLEEEDEDDDDGRKYEKVIEGLVMVIKNPCTHPGDVRYLKAVDNLRLRHL----RNVLV 1163
Query: 702 FPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLID---- 757
F G EI+G D DGD YF + L+ + +SE + +S N + +
Sbjct: 1164 FSTKGDVPNFKEISGSDLDGDRYFFCYDKSLIGNRSKSETAYLGDETVSNNDKKANVFND 1223
Query: 758 -FSLEELES------ELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAM 810
F+L + S EL K++ N+ +D + A + + + E +E
Sbjct: 1224 PFALSSMYSTNVERQELGKMY--------NSHLAISDLFGANHEFSIQISKECFKE---- 1271
Query: 811 KENMLRLINIYYDALDAPKKSGIKVEVPED----LKVEKFPCYMRRDES--VSFESTSVL 864
+D P K+GI +P++ LK + +P YM+R+ S V ++S +++
Sbjct: 1272 --------------IDYP-KTGIHGTIPKEANVWLKTKGYPHYMQRENSTRVYYQSKTIM 1316
Query: 865 GTIYNTVKSYEAVDRSVTEIW--KLPCFDDGVPEACMTKWKGYYDQYRWEMKEAIDKCTV 922
G +Y+ + + + I K DD E + K Y QY+ ++ + +
Sbjct: 1317 GKMYDQIDQLVYIGDFLPNISLDKSNLVDD--YEIYLNSAKILYSQYKLQVHSLLRHYSA 1374
Query: 923 EREEA 927
E EE+
Sbjct: 1375 ESEES 1379
>gi|440633273|gb|ELR03192.1| hypothetical protein GMDG_01175 [Geomyces destructans 20631-21]
Length = 1568
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 108/448 (24%), Positives = 187/448 (41%), Gaps = 69/448 (15%)
Query: 463 TESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFN 522
TE H P ++Q R+ KG L ++ Q I IR S K A+ +
Sbjct: 677 TELHLLHEPSVVQFRM----GGCKGILAISPDAKGQEIHIRKSQTKFTAE--------YM 724
Query: 523 SLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSF 582
LE+++TS+ T L+R I +LS GV + F +L L + ++ AL++
Sbjct: 725 GLEIIRTSSHSVAT-LNRQTITILSALGVEDHVFNRMLDEQLSNYMDAMNDPDKALELLG 783
Query: 583 NYGGMDY-DFTSARMILSG-ISLDEPYLQHRLSILMKEEKKSL-QAGKLPVTESYYLMGT 639
Y ++ A M+L G + EP++ L + K L + K+ V + +++G
Sbjct: 784 RYVDDNHMTMMIASMVLDGFMRTKEPFVLSLLHLWRSWSIKLLKEKAKIIVEKGAFVLGC 843
Query: 640 VDPTGILKSNEVCIILKDGQVSWEKV--------------------------LVYRNPGL 673
D T L+ + G ++ E + LV RNP L
Sbjct: 844 TDETQTLRGHSKTTNAGKGTITAEDIDKLPQIYLQVTDRKDPRHNVIIEGLCLVGRNPSL 903
Query: 674 HFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
H GDI V++A V L + + F G R + +GGD DGD +FV + +LL
Sbjct: 904 HPGDIRVVQAVDVPALHHL----RDVVVFSQLGDRDVPGMCSGGDLDGDDFFVIWDQDLL 959
Query: 734 KHFKESERWMSTSKNLSANKRL-IDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAV 792
W + + +A + +D +E +++ F+ K + +D +
Sbjct: 960 -----PREWNAEPMDYTAPPPVKLDRPVE--INDVMSFFV---------KYMKSDTLPTI 1003
Query: 793 MDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRR 852
L L D+ + + L L ++ A+D KSGI E+P+ L+ K+P +M +
Sbjct: 1004 AHAHLALSDQL--DFSVRDPKCLELAALHSKAVDF-VKSGIPAEMPKYLRPRKWPHFMEK 1060
Query: 853 DESVS---FESTSVLGTIYNTVKSYEAV 877
+ S +LG +Y+ V+S + +
Sbjct: 1061 KHKPKEQIYVSKKILGQLYDKVESVDFI 1088
>gi|310795671|gb|EFQ31132.1| RNA dependent RNA polymerase [Glomerella graminicola M1.001]
Length = 1313
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 100/397 (25%), Positives = 172/397 (43%), Gaps = 57/397 (14%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P +Q+R VKG L L +L ++I IR ++ D+ + LE+ +
Sbjct: 636 PTCLQIRW----GGVKGMLSLESRLSGRSICIRRESMEKFPSTDVQN------LEICDAA 685
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYD 590
++P K L+R +I ++ GV + FFL + +N LD R V ++ N + G+
Sbjct: 686 SKPLKLVLNRQMIKIMEDLGVDKNFFLRLQKNELDRLRAVTADAYNT-GTFLHLQGVGSA 744
Query: 591 FTSARMILS----GISL-DEPYLQHRL-SILMKEEKKSLQAGKLPVTESYYLMGTVDPTG 644
F I S GI + +L+ + S +++E + ++PV + L G +D TG
Sbjct: 745 FFLPTFIKSLEKYGIDYRRDDFLRAVVESTVLRELRLLKHKARIPVPQGATLFGVMDETG 804
Query: 645 ILKSNEVCII---------------LKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKEL 689
LK EV + L+DG +VLV R+P LH GDI L
Sbjct: 805 FLKEGEVYVCYDTYKSPGKAPTERSLRDG-----RVLVTRSPALHPGDIQ-LANMRTPPP 858
Query: 690 EDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNL 749
+ + + F +G R L +++GGD DGD+Y + + + + RW+ + +
Sbjct: 859 GHPLRNLRNCVAFSQHGQRDLPSQLSGGDLDGDLYNIIWDKQAMP------RWICKAADY 912
Query: 750 SANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAA 809
+ E L + + + F + +D + R L L D+ +++
Sbjct: 913 PR------VTPEPLGRPVTRDDMANWFV----DFMKSDVLGLIATRHLILSDQ--DQEGT 960
Query: 810 MKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKF 846
M N L+L ++ A+D K+GI VE E K +F
Sbjct: 961 MGRNCLKLAELHSTAVDF-SKTGIAVEQREIPKAPRF 996
>gi|83775472|dbj|BAE65592.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1188
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 97/402 (24%), Positives = 171/402 (42%), Gaps = 72/402 (17%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P Q+RL KG L + +L IQIRPSMIK D + +LE+ +
Sbjct: 589 PTCFQIRL----GGAKGMLAADSRLRTAVIQIRPSMIKF-------DSEDMKNLEICNMA 637
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYD 590
++P L+R +I +L G + +F + L + ++ VS +
Sbjct: 638 SRPYPMVLNRQVIKILEDMGASKDWFFQMQNEEL--------TRLQSITVSTDKTAR--- 686
Query: 591 FTSARMILSGISLDEPYLQ---HRL-------------SILMKEEKKSLQAGKLPVTESY 634
F + + I L Y Q RL +++++E + ++PV +
Sbjct: 687 FLKDKSVAECIGLYRLYRQCYWTRLNYKKDGFLRAIVEAVVLRELRLLKHKARIPVKKGM 746
Query: 635 YLMGTVDPTGILKSNEVCIILKDGQVSWE------KVLVYRNPGLHFGDIHVLKATYVKE 688
L G +D TG L+ EV + + + +LV R+P LH GDI +A V
Sbjct: 747 TLYGVIDETGFLQEGEVYVTFDRMEGRYAAPPGPGHILVTRSPALHCGDIQ--RAQNVIP 804
Query: 689 LEDF-VGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPEL--LKHFKESERWMST 745
ED + + I F G R L +++GGD DGD+Y V +PEL ++ F ++ T
Sbjct: 805 PEDHPLRYHRNCIVFSQKGSRDLPSKLSGGDLDGDLYHVIWDPELESVETFAPADYPRPT 864
Query: 746 SKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAE 805
S ++ + R+ D + F F+ + D + R + + D++A
Sbjct: 865 SIDIGRDVRVDDM------AAFFVEFMRS------------DILGMIAIRHMVMADQAA- 905
Query: 806 EKAAMKENMLRLI-NIYYDALDAPKKSGIKVEVPEDLKVEKF 846
+ ++ RL+ ++ A+D K+GI V + + +V ++
Sbjct: 906 --SGTRDTSCRLLAGLHSKAVDF-SKTGIPVNMEDMPRVNRY 944
>gi|317158412|ref|XP_001826725.2| rna-dependent rna polymerase [Aspergillus oryzae RIB40]
Length = 1206
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 97/402 (24%), Positives = 171/402 (42%), Gaps = 72/402 (17%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P Q+RL KG L + +L IQIRPSMIK D + +LE+ +
Sbjct: 589 PTCFQIRL----GGAKGMLAADSRLRTAVIQIRPSMIKF-------DSEDMKNLEICNMA 637
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYD 590
++P L+R +I +L G + +F + L + ++ VS +
Sbjct: 638 SRPYPMVLNRQVIKILEDMGASKDWFFQMQNEEL--------TRLQSITVSTDKTAR--- 686
Query: 591 FTSARMILSGISLDEPYLQ---HRL-------------SILMKEEKKSLQAGKLPVTESY 634
F + + I L Y Q RL +++++E + ++PV +
Sbjct: 687 FLKDKSVAECIGLYRLYRQCYWTRLNYKKDGFLRAIVEAVVLRELRLLKHKARIPVKKGM 746
Query: 635 YLMGTVDPTGILKSNEVCIILKDGQVSWE------KVLVYRNPGLHFGDIHVLKATYVKE 688
L G +D TG L+ EV + + + +LV R+P LH GDI +A V
Sbjct: 747 TLYGVIDETGFLQEGEVYVTFDRMEGRYAAPPGPGHILVTRSPALHCGDIQ--RAQNVIP 804
Query: 689 LEDF-VGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPEL--LKHFKESERWMST 745
ED + + I F G R L +++GGD DGD+Y V +PEL ++ F ++ T
Sbjct: 805 PEDHPLRYHRNCIVFSQKGSRDLPSKLSGGDLDGDLYHVIWDPELESVETFAPADYPRPT 864
Query: 746 SKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAE 805
S ++ + R+ D + F F+ + D + R + + D++A
Sbjct: 865 SIDIGRDVRVDDM------AAFFVEFMRS------------DILGMIAIRHMVMADQAA- 905
Query: 806 EKAAMKENMLRLI-NIYYDALDAPKKSGIKVEVPEDLKVEKF 846
+ ++ RL+ ++ A+D K+GI V + + +V ++
Sbjct: 906 --SGTRDTSCRLLAGLHSKAVDF-SKTGIPVNMEDMPRVNRY 944
>gi|310791166|gb|EFQ26695.1| RNA dependent RNA polymerase [Glomerella graminicola M1.001]
Length = 1269
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 151/652 (23%), Positives = 256/652 (39%), Gaps = 135/652 (20%)
Query: 257 DNILLVKFDEEL-GGHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKD 315
D L V+F +EL G +N + +++ + ++GI +G R Y F F + E
Sbjct: 474 DRFLRVQFTDELYKGKVYNNAGTEIFNRIYRVLKQGIKIGNRVYEFLAFGNSQIRE---- 529
Query: 316 PSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILS 375
YF F Y + + + F H+R +VA Y +R+ S
Sbjct: 530 -----CAVYF-------FCPTAYT---TCDDIRQWMGEFSHIR---NVAKYAARIGQCFS 571
Query: 376 KTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYK 435
T ++ + + RI ++ G +DG G IS+ LA
Sbjct: 572 TTREIR----GVTVPRIVQAEDIERGG---------YCFSDGVGKISKLLA--------- 609
Query: 436 EKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKL 495
E N+ E G P Q R+ KG L +
Sbjct: 610 EMVVNEMGQE--------------------SVGIPSAF-QFRM----GGCKGMLAVWPDA 644
Query: 496 PPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIF 555
+ IRPS K KA FN LE+++ + T L+R I +L+ GV
Sbjct: 645 KGLEVHIRPSQEKFKAQ--------FNGLEIIRFAQYSVAT-LNRQTITILATLGVESEP 695
Query: 556 FLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSAR---MILSGI---SLDEPYLQ 609
L + + + + ++ A + Y +D + TS ++ G + EP++
Sbjct: 696 ILQLAKQQVQNYEKAMRDRVAAAGLLGRY--VDENMTSLTIKDLVCWGFMDTEVQEPFVL 753
Query: 610 HRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKSNEVC--------------II 654
L++ K L + ++ V +S +L+G +D TG L+ + I
Sbjct: 754 TILNLWRIWSVKLLKEKARVIVEQSAFLLGCLDETGTLRGHSKATEGRETRNIEDIPQIF 813
Query: 655 LK-----DGQVSWEK--VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGP 707
L+ DG+ +V RNP LH GDI V++A V L K + FP G
Sbjct: 814 LQIPNPDDGKFYCVTGVCIVGRNPSLHPGDIRVVEAVDVPALRHL----KNVVVFPSIGD 869
Query: 708 RSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESEL 767
R + ++GGD DGD +FV NP L+ +W + A+K + L+
Sbjct: 870 RDVPSMLSGGDLDGDDFFVIWNPALI-----PPQWHQPPMDYVASKAPV------LKRGF 918
Query: 768 FKLF-LNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALD 826
K+ L T F + + DC V L D+S + A ++L ++ A+D
Sbjct: 919 VKVSDLRTFFV----RYMQNDCLALVAVAHLAQADQS--QAGARDGKCIKLAELHSKAVD 972
Query: 827 APKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVD 878
K + + P L+ +++P +M R +++S S +G IY+ ++ +A+D
Sbjct: 973 YVKTAD-PADFPPYLQPKRWPHFMNRKN--TYKSLSPIGQIYDMIQD-QALD 1020
>gi|414877742|tpg|DAA54873.1| TPA: hypothetical protein ZEAMMB73_768916 [Zea mays]
Length = 937
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 108/405 (26%), Positives = 174/405 (42%), Gaps = 86/405 (21%)
Query: 359 TVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGT 418
T +VA + +R+ S T ++ + ++ E C D+ V +G I +DG
Sbjct: 555 TSKNVAKHAARMGQCFSST------YATVVLQPHEVNECLDE----VEHNG--YIFSDGI 602
Query: 419 GFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRL 478
G I+ DLAL +VA+ PP Q+R
Sbjct: 603 GKITCDLAL-------------------------------EVAQKLQLTDNPPSAYQIR- 630
Query: 479 FYNGTAVKGTL-LLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVK-TSNQPRKT 536
Y G KG + + K + +RPSM K +++ + LEVV T QP
Sbjct: 631 -YAG--FKGVISVWEGKNDGIRLSLRPSMHKFESNHTV--------LEVVSWTKFQP--G 677
Query: 537 YLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARM 596
+L+R +I LLS VP+ F + L + + S+ A + + T+A M
Sbjct: 678 FLNRQIITLLSSLNVPDAIFAQMQEAMLSNLNNILSDSDVAFDI-VTASCAEQGTTAALM 736
Query: 597 ILSGISLD-EPYLQHRL-SILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEV--- 651
+ +GIS EP+L+ L +I + L+ ++ V + +LMG +D GIL+ +
Sbjct: 737 LSAGISPGTEPHLKAMLLAIRSSQLLGLLEKTRIFVPKGRWLMGCLDELGILEQGQCFIR 796
Query: 652 --------CII-----LKDGQVSWEKVL----VYRNPGLHFGDIHVLKATYVKELEDFVG 694
C++ L + E +L + +NP LH GD+ +L+A V EL V
Sbjct: 797 ASSPSLNNCLVKYGSRLSAANTNAETILGTIVMAKNPCLHPGDVRILEAVDVPELHHLVD 856
Query: 695 TSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKES 739
+ FP G R A+E +G D DGD+YFV+ + L+ K+S
Sbjct: 857 ----CLVFPKKGERPHANEASGSDLDGDLYFVTWDENLIPPGKKS 897
>gi|343428005|emb|CBQ71530.1| related to RNA-dependent RNA polymerase [Sporisorium reilianum
SRZ2]
Length = 1505
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 140/578 (24%), Positives = 226/578 (39%), Gaps = 96/578 (16%)
Query: 200 EKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQ--RELGDD 257
E+L R++ Q D + + ++H I T +GP+++ + L+ E G
Sbjct: 441 ERLKRQHARQVDVLDAQVNSTATAQVFHVTI-TPTRTLLEGPFMDASNRVLRLFPEFGS- 498
Query: 258 NILLVKFDEELGGH--RSSNNWNDSYS-------KYNEIAREGILVGLRCYHFFVFKDGG 308
+ L V F +E G S +++ D + +EGI + R + + G
Sbjct: 499 HFLRVAFCDEDGDRFPVSRHDFADDIDSESFVRERIGTPLKEGIDIAGRRFEALAWSGSG 558
Query: 309 KEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMS 368
C+FV +AF D ++ A + + S V N +
Sbjct: 559 LGSHH---------CWFV----TAFTDKDGKWW-------NAERIRASLGNFSRVENQPA 598
Query: 369 RLSLILSKTMKLEVDFSRIN---IERIEDE------PCRDKDGNVVYKDGEALIHTDGTG 419
R LS+ RI+ I+ +ED+ P + +G + + TDG G
Sbjct: 599 RFGARLSQAFSATSSTIRISDDWIQIVEDDFSHALMPSSNGNGR---SSKQRYLLTDGVG 655
Query: 420 FISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLF 479
IS L +++E C + R+E D AR P +Q RL
Sbjct: 656 EISRALL----NEIWRELCAVKNM------RREWTLCEQDAARI-------PSAIQFRL- 697
Query: 480 YNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLS 539
KG L LN +L + +++R SMIK A LEV TS L+
Sbjct: 698 ---GGAKGVLCLNPQLKGKVMKVRHSMIKFSAPE-------HRDLEVATTSFSALPARLN 747
Query: 540 RNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARM--- 596
R LI L GVP FL + A++ A+ R A ++ + D +A M
Sbjct: 748 RPLINALEDLGVPAHVFLTLQDKAVESAQSARKCFRRASQLMGTFALSD----TAEMHRL 803
Query: 597 -----ILSGISLDE----PYLQHRLSILMKEEKKSLQ-AGKLPVTESYYLMGTVDPTGIL 646
+ GI D+ L +I++ L+ ++PV + L+G VD G L
Sbjct: 804 FRRLDSIVGIQPDQLPADGILNRLCTIVIAAALGDLKRKARIPV-DGCTLIGVVDEFGFL 862
Query: 647 KSNEVCIIL---KDGQVSW--EKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIF 701
+ E+ + KDG + +V+V R+P +H GD+ V+ A +F
Sbjct: 863 QKGEIFAQVDYGKDGSFTAVEGRVMVGRSPTIHPGDVRVVNAVVPPRGHPLWQLRNVLVF 922
Query: 702 FPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKES 739
C R L ++GGD DGD+Y + R+P+L ES
Sbjct: 923 NKCPTGRPLQSILSGGDLDGDIYTIYRDPQLFPKRIES 960
>gi|402078468|gb|EJT73733.1| RNA-dependent RNA polymerase [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1287
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 135/639 (21%), Positives = 254/639 (39%), Gaps = 113/639 (17%)
Query: 230 ISTKGNCTFKGPYLNQTRTHLQRELG-DDNILLVKFDEELGGHR-----SSNNWNDSYSK 283
+ T T GP + L++ G D L V+F +E G R + + Y +
Sbjct: 447 VVTPTRITLHGPEVETKNRVLRKHPGHQDYFLRVQFCDE--GSRDLRFETGVSVERVYQR 504
Query: 284 YNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILS 343
+ ++ GI + R Y+F F S +F +AF D +++
Sbjct: 505 FKDVLLSGIRLPGRIYNFLGFSHS---------SLRTSSVWFC----AAFRDKETGKLVN 551
Query: 344 GKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLE--VDFSRINIERIEDEPCRDKD 401
K++ E F H+R + +A +R+ S+T + +S I I+ + D
Sbjct: 552 HKSIIEGLGEFGHIRCPAKLA---ARIGQAFSETPSVVPLSGYSDILIKHVPD------- 601
Query: 402 GNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVA 461
+ DG +DG G +SE++ +V +K
Sbjct: 602 --IYSADGRRCF-SDGVGSVSEEMMRIIWAHVPMKK------------------------ 634
Query: 462 RTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTF 521
P Q+R KG L L+ L + I R SM K D
Sbjct: 635 -------NAPTCFQIR----HAGCKGMLALDTTLSGKIIYFRDSMKKF-------DSIDQ 676
Query: 522 NSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVS 581
LE+ T ++ L+R +I +L G +FL + L + + V +N N ++
Sbjct: 677 EDLEICDTGSKAIPLVLNRQMIKILEDMGADHKWFLKLQSYRLKELQAVTANAYN-VQTF 735
Query: 582 FNYGGMDYDFTSARMI----LSGISLD-EPYLQHRLSILMKEEKKSLQ-AGKLPVTESYY 635
+ + + + I L+G+ +P+L+ + L+ +E + L+ ++PV++
Sbjct: 736 LHTANVGQPISLGKFIYWAHLNGMDYKKDPFLRGVVEALVLQELRLLKHKARIPVSKGKT 795
Query: 636 LMGTVDPTGILKSNEVCIILKDGQVSW--------EKVLVYRNPGLHFGDIHVLKATYVK 687
L G +D TG+L+ +V + ++ + V+V R+P LH GDI ++ +
Sbjct: 796 LFGLIDETGLLREGQVYVTFASEKIPGFQKPPRHSQSVIVTRSPALHPGDIQIV-TNIIP 854
Query: 688 ELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSK 747
+ + + +IFF +G R L ++GGD DGD+Y + + E+L +R+
Sbjct: 855 PPDHPLAAHRNSIFFSRHGSRDLPSMLSGGDLDGDIYNIIWDKEVLP----KQRFHPAD- 909
Query: 748 NLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEK 807
+N D ++ + F++ + D A+ R + L D+ E
Sbjct: 910 --YSNAPPQDIGRPVEREDIVQHFVDF---------MKNDNLGAIATRHMILADQMVE-- 956
Query: 808 AAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKF 846
+ + +L ++ A+D K+GI V++ E + +F
Sbjct: 957 GTLHPDCQKLAELHSTAVDF-SKTGIPVDMKELPRTNRF 994
>gi|346325370|gb|EGX94967.1| rna-dependent rna polymerase [Cordyceps militaris CM01]
Length = 1252
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 126/525 (24%), Positives = 206/525 (39%), Gaps = 95/525 (18%)
Query: 230 ISTKGNCTFKGPYLNQTRTHLQRELGD--DNILLVKFDEELGGHRSSNNW--NDS-YSKY 284
I + + +GP ++R + R D D L V F +E G + N ND Y ++
Sbjct: 441 IVSPTRISLQGPD-PESRNRVLRMFPDRGDQFLRVSFCDEDGQRLAFNPRVSNDPIYERF 499
Query: 285 NEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSG 344
E+ +GI + R + F F S +F+ + FID Q +
Sbjct: 500 REVLTKGIRIAGRHFSFLGFSHS---------SLRSHSTWFL----APFIDADGQR-QNR 545
Query: 345 KTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDF--SRINIERIEDEPCRDKDG 402
T+ F + T + A +R+ S+T VD +RI + I D + DG
Sbjct: 546 DTILAVLGNFSDILTPAKCA---ARIGQAFSET-PYAVDLFETRIGVRWIPD--VKSADG 599
Query: 403 NVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVAR 462
N V+ DG I ED P C
Sbjct: 600 NRVFSDGVGTISWGAV----EDFWKALPKRSAGVTC------------------------ 631
Query: 463 TESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRP-SMIKVKADRDLSDGQTF 521
Q+R VKG L+L+ +LP + I +R SM+K + Q
Sbjct: 632 -----------FQIRW----AGVKGLLVLDPRLPGKVICVRKESMMKFPS-------QDL 669
Query: 522 NSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRN-ALKV 580
L + +++P + L+R +I +L G +FL + +ALD R V + N + +
Sbjct: 670 KELGICDVASRPLRLVLNRQVIKILEDMGTSASWFLALQNDALDFLRAVTATPLNTSTFL 729
Query: 581 SFNYGGMDYDFTSARMILSGISLD---EPYLQHRLS-ILMKEEKKSLQAGKLPVTESYYL 636
+ G S LS + +D + +L+ + ++++E + ++PV + L
Sbjct: 730 QYQDIGSAIGLPSFIKQLSKMDIDYRHDTFLKSVVEHVVLRELRLLKHKARIPVPKGVTL 789
Query: 637 MGTVDPTGILKSNEVCIILK----------DGQVSWEKVLVYRNPGLHFGDIHVLKATYV 686
G +D TG L NEV I D + V+V R+P LH GDI + K
Sbjct: 790 FGVMDETGFLGENEVYITFDSTRGKSGERMDATLIDGPVIVTRSPALHPGDIQIAKMVTP 849
Query: 687 KELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPE 731
+ + + + I F G R L +++GGD DGD+Y V +P+
Sbjct: 850 PDSHP-LKSLRNCIAFSQRGSRDLPSQLSGGDLDGDLYNVIWDPK 893
>gi|345566166|gb|EGX49112.1| hypothetical protein AOL_s00079g66 [Arthrobotrys oligospora ATCC
24927]
Length = 1475
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 97/411 (23%), Positives = 174/411 (42%), Gaps = 74/411 (18%)
Query: 502 IRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILR 561
IRPS K AD NSLE+++ S+ T L+R LI +LS G+ + FLD L
Sbjct: 826 IRPSQRKFDADH--------NSLEIIRYSDFSVAT-LNRQLIQVLSDLGLEDTVFLDKLH 876
Query: 562 NALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLD------EPYLQHRLSIL 615
+ L D +K A K+ + D + ++G+ D EP++Q L +
Sbjct: 877 SQLRDLNLAMEDKEAARKILMK----NVDANGGTIQIAGLLSDGFMTSQEPFVQCLLHLW 932
Query: 616 MKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKSN------------------------E 650
K L + ++ + +L+G VD TGILK + E
Sbjct: 933 RAWSIKMLKEKARITIENGCFLLGVVDETGILKGHFDKEHEELKKSRANGEALRCDLLPE 992
Query: 651 VCIILKDGQ------VSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPC 704
+ + + D + + L+ RNP LH GD+ V+ A +L + + FP
Sbjct: 993 IFVQIPDYENKGHYKIIQGPCLLARNPSLHPGDLRVVNAVDCPDLRHL----RNVVVFPQ 1048
Query: 705 NGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELE 764
G + +A+ +GGD DGD Y V + + K +E M + + + +LE++
Sbjct: 1049 TGDKPIANMCSGGDLDGDDYIVIWDGTFIPP-KVNESPMDYTPPKPVEAKSGNVTLEDIR 1107
Query: 765 SELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDA 824
K F+ R+ ++ A+ A DR + + L ++ A
Sbjct: 1108 ----KFFV--RYMKNDTLGTIANAHLATADRL---------PAGVFSQECVELAGLHSLA 1152
Query: 825 LDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVS---FESTSVLGTIYNTVK 872
+D P K+G+ ++ ++L++ +P + + + S+ +LG +Y+ V+
Sbjct: 1153 VDFP-KTGVDAKMRKELRIRDWPHFFEKHIGTKKRFYVSSEILGQLYDAVE 1202
>gi|14475569|emb|CAC41974.1| putative RNA dependent RNA polymerase [Dictyostelium discoideum]
Length = 1883
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 119/476 (25%), Positives = 202/476 (42%), Gaps = 63/476 (13%)
Query: 475 QVRLFYNGTAVKGTLLLNKKLP-PQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQP 533
QVR+ N KG L++N + P P I IRPSM+K + G +LE+ S
Sbjct: 1120 QVRIGGN----KGVLVVNNQAPDPSGIYIRPSMVKFNP---IDCGDEHRTLEICSVSTTS 1172
Query: 534 RKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTS 593
R L+R +I+LLS G + F + + L+ + N NA K + D
Sbjct: 1173 R-CKLNRQVISLLSTLGTQDNVFFALQDHYLNQVAQIV-NDTNASKQAIVEFFPD----- 1225
Query: 594 ARMILSGISLDEPYLQHRLSILMKEEKKSLQAG-KLPVTESYYLMGTVDPTGILKSNEVC 652
I G +PY++ L L K + + +Q + + +S L+G DPT L N V
Sbjct: 1226 ---ITEGELYQDPYIRRILISLYKLKMERIQQKCHIEIKDSRMLLGVCDPTNSLPPNTVF 1282
Query: 653 IILKDGQV-------SWEKV-----LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAI 700
+ L++ +EKV +V +NP H GD+ LKA L + +
Sbjct: 1283 VQLEEEDEDDDDDGRKYEKVIEGLVMVIKNPCTHPGDVRYLKAVDNIRLRHL----RNVL 1338
Query: 701 FFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSL 760
F G EI+G D DGD YF + L+ + ESE + +S N +
Sbjct: 1339 VFSTKGDVPNFKEISGSDLDGDRYFFCYDKSLIGNRSESETAYLVVETVSNNDK------ 1392
Query: 761 EELESELFKLFLNTRFCPSNAKSLAADCWQ--AVMDRFLTLGDESAEEKAAMKENMLRLI 818
++ +F N F S+ S A+ + + L + D+ A + +++
Sbjct: 1393 ---KANVF----NDPFALSSMYSTNAERQELGKLYHSHLAISDQY----GANHKYSIQIS 1441
Query: 819 NIYYDALDAPKKSGIKVEVPEDLKVE----KFPCYMRRDES--VSFESTSVLGTIYNTVK 872
+ +D P K+GI +P+++ + +P YM+R+ S V ++S ++G +Y+ +
Sbjct: 1442 KECFKEIDYP-KTGIHGTIPKEVNIRLQTVGYPHYMQRENSTRVYYQSKKIMGKMYDQID 1500
Query: 873 SYEAVDRSVTEI-WKLPCFDDGVPEACMTKWKGYYDQYRWEMKEAIDKCTVEREEA 927
+ + I DG E + K Y QY+ ++ + + E EE+
Sbjct: 1501 QLVYIGDFLPNISLDKSNLVDGY-EIYLNSAKILYSQYKLQVHSLLRHYSAESEES 1555
>gi|449457379|ref|XP_004146426.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|449491619|ref|XP_004158954.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase 1a [Cucumis sativus]
Length = 1130
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 165/699 (23%), Positives = 262/699 (37%), Gaps = 157/699 (22%)
Query: 219 DSGKTHMYHCHISTKGNCTFKGPYLN---QTRTHLQRELGDDNILLVKF-DEELGGHRSS 274
D G ++ I T F GP +N + H + + DN L V F DEE RS+
Sbjct: 360 DDGLVYVRRVQI-TPCKVFFCGPEVNVSNRVLRHFSQYI--DNFLRVSFVDEEWDKMRST 416
Query: 275 N-----------NWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKC 323
+ D Y + + + GI++G + + F F
Sbjct: 417 DLLPRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAF------------------- 457
Query: 324 YFVRMESSAFIDMGYQYILSGKTVHEA--RYMFMHVRTVSSVANYMSRLSLIL-SKTMKL 380
SS D SG + A R R + + A Y +RL S T L
Sbjct: 458 -----SSSQLRDNSLWMFASGPDIDAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEAL 512
Query: 381 EVDFS-RINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCT 439
V + R I IE + G + Y + +DG G IS A
Sbjct: 513 SVASNEREIIPDIEVQ-----QGEIKY------VFSDGIGKISSKFA------------- 548
Query: 440 NDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQT 499
KE+ A + + P Q+R Y G KG + ++ P T
Sbjct: 549 -----------KEVAA--------KCGFQAVPSAFQIR--YGG--YKGVVAVD---PYST 582
Query: 500 IQI--RPSMIKVKADRDLSDGQTFNSLEVVKTSN-QPRKTYLSRNLIALLSYGGVPEIFF 556
I++ R SM K ++D L+V+ S QP +L+R LI L+S GV + F
Sbjct: 583 IKLSLRKSMCKFESDN--------TKLDVLGHSKYQP--CFLNRQLITLMSTLGVRDEIF 632
Query: 557 LDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLD-EPYLQHRLSIL 615
A++ + ++ A + + M+ G D EPYL L
Sbjct: 633 EKKQSEAVEQLDAILTDPLKAQEALELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTF 692
Query: 616 MKEEKKSLQA-GKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQ--------------- 659
+ L+ ++ + +MG +D T L+ +V + + G+
Sbjct: 693 RASKLLELRTKSRIFIPNGRAMMGCLDETRTLEYGQVFVQISSGRHRNLSESFAFNRIGR 752
Query: 660 ----VSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIA 715
V V V +NP LH GD+ VLKA + L V + FP G R +E +
Sbjct: 753 EHHLVIEGNVTVAKNPCLHPGDVRVLKAVNIPGLYHMVD----CVVFPQKGSRPHPNECS 808
Query: 716 GGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSA--NKRLIDFSLEELESELFKLFLN 773
G D DGD+YFV + EL+ R + A N+ D + E+++ +N
Sbjct: 809 GSDLDGDIYFVCWDTELI-----PSRQIPPMDYTPAPPNELDRDVTTEDIQEYFVNYMVN 863
Query: 774 TRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGI 833
++ + A+ A D+ E A L L ++ A+D P K+G+
Sbjct: 864 ------DSLGIIANAHTAFADK---------ELFKARSSPCLELAKLFSVAVDFP-KTGV 907
Query: 834 KVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVK 872
+P L V++FP +M + + S+ES V+G ++ VK
Sbjct: 908 PAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVK 946
>gi|51989472|gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
Length = 1197
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 133/536 (24%), Positives = 224/536 (41%), Gaps = 105/536 (19%)
Query: 362 SVANYMSRLSLILSKT-MKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGF 420
+VA +R+ S T +EV S +N E P +++G V +DG G
Sbjct: 546 NVAKCAARMGQCFSSTYATVEVPSSEVNSEL----PDIERNGYVF---------SDGIGM 592
Query: 421 ISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFY 480
IS DLAL+ ++ L N PP Q+R Y
Sbjct: 593 ISADLALEVA------------------EKLHLSVN-------------PPSAYQIR--Y 619
Query: 481 NGTAVKGTL-LLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVK-TSNQPRKTYL 538
G KG + K + +RPSM K ++ + LE+ T QP +L
Sbjct: 620 AGC--KGVVACWPTKNDGILLSLRPSMKKFDSNHTI--------LEICSWTRFQP--GFL 667
Query: 539 SRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMIL 598
+R ++ LLS V + F ++ + + + + A V + T+A M+
Sbjct: 668 NRQIVTLLSSLDVKDGIFWEMQKEMISGLNKMLVDSDVAFDV-ITASCAEAGNTAAIMLS 726
Query: 599 SGIS-LDEPYLQHRLSILMKEEKKSLQ-AGKLPVTESYYLMGTVDPTGILKSNEVCI--- 653
+G EP+L+ LS + + L+ ++ V +LMG +D G L+ + I
Sbjct: 727 AGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVS 786
Query: 654 -----------------ILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTS 696
I K+ QV V++ +NP LH GD+ +L+A V L
Sbjct: 787 SPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGLHHLYD-- 844
Query: 697 KYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLI 756
+ FP G R ++E +G D DGD+YFV+ + L+ K+S W+ + + K+L
Sbjct: 845 --CLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKS--WIPMNYEPAEVKQL- 899
Query: 757 DFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLR 816
+ ++ F +K++ + + + + D S E A+ E L+
Sbjct: 900 --GRQVNHMDIIDFF---------SKNMVQESLGEICNAHVVHADLS--EFGALDEKCLK 946
Query: 817 LINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVK 872
L + A+D PK +G V +P DLK + +P +M ++E S++S +LG +Y VK
Sbjct: 947 LAELAALAVDFPK-TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVK 1001
>gi|238508311|ref|XP_002385352.1| RNA-dependent RNA polymerase, putative [Aspergillus flavus
NRRL3357]
gi|220688871|gb|EED45223.1| RNA-dependent RNA polymerase, putative [Aspergillus flavus
NRRL3357]
Length = 1107
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 99/402 (24%), Positives = 173/402 (43%), Gaps = 72/402 (17%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P Q+RL G A KG L + +L IQIRPSMIK D + +LE+ +
Sbjct: 589 PTCFQIRL---GRA-KGMLAADSRLRTAVIQIRPSMIKF-------DSEDMKNLEICNMA 637
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYD 590
++P L+R +I +L G + +F + L + ++ VS +
Sbjct: 638 SRPYPMVLNRQVIKILEDMGASKDWFFQMQNEEL--------TRLQSITVSTDKTAR--- 686
Query: 591 FTSARMILSGISLDEPYLQ---HRL-------------SILMKEEKKSLQAGKLPVTESY 634
F + + I L Y Q RL +++++E + ++PV +
Sbjct: 687 FLKDKSVAECIGLYRLYRQCYWTRLNYKKDGFLRAIVEAVVLRELRLLKHKARIPVKKGM 746
Query: 635 YLMGTVDPTGILKSNEVCIILKDGQVSWE------KVLVYRNPGLHFGDIHVLKATYVKE 688
L G +D TG L+ EV + + + +LV R+P LH GDI +A V
Sbjct: 747 TLYGVIDETGFLQEGEVYVTFDRMEGRYAAPPGPGHILVTRSPALHCGDIQ--RAQNVIP 804
Query: 689 LEDF-VGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPEL--LKHFKESERWMST 745
ED + + I F G R L +++GGD DGD+Y V +PEL ++ F ++ T
Sbjct: 805 PEDHPLRYHRNCIVFSQKGSRDLPSKLSGGDLDGDLYHVIWDPELESVETFAPADYPRPT 864
Query: 746 SKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAE 805
S ++ + R+ D + F F+ + D + R + + D++A
Sbjct: 865 SIDIGRDVRVDDM------AAFFVEFMRS------------DILGMIAIRHMVMADQAA- 905
Query: 806 EKAAMKENMLRLI-NIYYDALDAPKKSGIKVEVPEDLKVEKF 846
+ ++ RL+ ++ A+D K+GI V + + +V ++
Sbjct: 906 --SGTRDTSCRLLAGLHSKAVDF-SKTGIPVNMEDMPRVNRY 944
>gi|312283345|dbj|BAJ34538.1| unnamed protein product [Thellungiella halophila]
Length = 998
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 97/355 (27%), Positives = 159/355 (44%), Gaps = 62/355 (17%)
Query: 537 YLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARM 596
+L+R +I+LLS GVP+ F D+ + L + + A +V + T+A M
Sbjct: 665 FLNRQIISLLSVLGVPDEIFWDMQESMLCKLNRILDDIDVAFEV-LTTSCAEQGNTAAIM 723
Query: 597 ILSGISLD-EPYLQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKSNEVCII 654
+ +G EP+L+ LS + + L + ++ V+ +LMG +D GIL+ + I
Sbjct: 724 LSAGFKPKIEPHLRGMLSSVRTAQLWGLREKSRIFVSSGRWLMGCLDEAGILEQGQCFIQ 783
Query: 655 LK--------------------DGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVG 694
+ D QV V + +NP LH GD+ +L+A V +L D
Sbjct: 784 VSKPSIENCFSRHGSRFKESKADMQVVKGYVAIAKNPCLHPGDVRILEAVDVPQLHDMYD 843
Query: 695 TSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKR 754
+ FP NG R +E +G D DGD+YFV+ + +L+ +ES W + + + K
Sbjct: 844 ----CLIFPQNGDRPHTNEASGSDLDGDLYFVAWDQKLIPPSRES--WHAMQYDAAKEKT 897
Query: 755 L---------IDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAE 805
L IDF ++ + +E L T C NA + AD
Sbjct: 898 LGRPVNHQDIIDFFVKNMANE----HLGT-IC--NAHVVHAD----------------RS 934
Query: 806 EKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFES 860
E AM E L L + A+D P K+G V +P LK + +P +M +++ ++ S
Sbjct: 935 EYGAMDEECLLLAELAATAVDFP-KTGKIVSMPFHLKPKLYPDFMGKEDYQTYLS 988
>gi|361125379|gb|EHK97425.1| putative RNA-dependent RNA polymerase 1 [Glarea lozoyensis 74030]
Length = 1213
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 166/722 (22%), Positives = 259/722 (35%), Gaps = 165/722 (22%)
Query: 220 SGKTHMYH-CHISTKGNCT-----FKGPYL---NQTRTHLQRELGDDNILLVKF-DEELG 269
S KT + H C S K T F P + N+ H RE D L V+F DE
Sbjct: 235 SVKTDIPHYCAYSRKATITPSTILFSSPTVETTNRVLRHYSRENHDGRFLRVQFTDESFE 294
Query: 270 GHRSS--NNWNDS-YSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFV 326
G +S ND +++ GI +G R Y F F +
Sbjct: 295 GKINSCVKQRNDEIFTRVYRTLANGIRIGDRHYKFLAFGN-------------------- 334
Query: 327 RMESSAFIDMGYQYILSGK--TVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDF 384
S F + G + + T ++ R + ++ A Y +RL S T +
Sbjct: 335 ----SQFRENGAYFFCEDEHLTCNDIRDWMGNFTHINVPAKYAARLGQCFSTTRAIN-GL 389
Query: 385 SRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDST 444
S I I D + G Y DG I I+ +L L
Sbjct: 390 SAPTIVTIPDI----EHGKYTYSDGVGKISPFLAQMITAELGL----------------- 428
Query: 445 ERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRP 504
H P Q RL KG L+ + + IR
Sbjct: 429 ---------------------HVAHEPSAFQFRL----GGCKGILVTWPDAKDREVHIRK 463
Query: 505 SMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNAL 564
S K A +N LE+++ S T L+R I LLS GV + FL +++ L
Sbjct: 464 SQQKFTA--------VYNGLEIIRCSQYSCAT-LNRQTITLLSNLGVGDGVFLKMMKEQL 514
Query: 565 DDARGVFSNKRNALKVSFNY-GGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSL 623
+ N A+++ + A+MI S I +P++ L + K L
Sbjct: 515 SGYQNAMENDNLAIELLCRFIDDNRMTINIAKMISSDIK--DPFVSSLLHLWRSWSIKLL 572
Query: 624 -QAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDG-----------QVSWEKV------ 665
+ K+ V + ++ G VD T L+ + D QV
Sbjct: 573 KEKAKIVVEKGAFVFGCVDETHTLRGYKAPSTEGDAIPEEQLPQIFIQVPVHGCDPKNPV 632
Query: 666 --------LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGG 717
LV RNP LH GD+ + +A V L + + FP G R + +GG
Sbjct: 633 YNVIEGICLVGRNPSLHPGDLRICQAIDVPALHHL----RDVVVFPSCGDRDVPSMCSGG 688
Query: 718 DFDGDMYFVSRNPELLKHFKESERWMSTSKNLS---ANKRLIDFSLEELESELFKLFLNT 774
D DGD YFV + +L H W + + A + ++++L + N
Sbjct: 689 DLDGDDYFVIWDKDLQPH-----EWNCSPMDYDAPPAKSQRNPVAVKDLMQHFVRYMKN- 742
Query: 775 RFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIK 834
D + L D+ A ++L +++ A+D KSG
Sbjct: 743 ------------DSLPQIAHAHLAQADQLP--GGAKNPKCIQLAHLHSKAVDY-VKSGHA 787
Query: 835 VEVPEDLKVEKFPCYM-----RRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLPC 889
E+P+DL+ ++P +M R+D+ +EST++LG +YN V+ + + WK+P
Sbjct: 788 AEMPKDLQPRRWPHFMEKRHKRKDQ--LYESTTILGQLYNQVERINFLPQ-----WKVP- 839
Query: 890 FD 891
FD
Sbjct: 840 FD 841
>gi|302918417|ref|XP_003052653.1| hypothetical protein NECHADRAFT_91974 [Nectria haematococca mpVI
77-13-4]
gi|256733593|gb|EEU46940.1| hypothetical protein NECHADRAFT_91974 [Nectria haematococca mpVI
77-13-4]
Length = 1250
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 156/699 (22%), Positives = 271/699 (38%), Gaps = 143/699 (20%)
Query: 230 ISTKGNCTFKGPYLNQT-RTHLQRELGDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIA 288
+ T F P + + R Q + D L ++F EEL R + N + + Y +
Sbjct: 424 VVTPTTIRFNSPAVEMSNRVMRQYKHIQDRFLRIQFVEELENTRIAINKDQNDEIYKRVL 483
Query: 289 R---EGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGK 345
R +GI +G R Y F F G + + + + +F E ++ D+
Sbjct: 484 RTMYQGIRIGDRVYEFLAF---GSSQLRVNGAY-----FFCPTEHTSCDDI--------- 526
Query: 346 TVHEARYM--FMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGN 403
++M F H++ V A Y +RL S T ++ I+ I + P +++G+
Sbjct: 527 ----RKWMGQFSHIKVV---AKYAARLGQCFSTTREVR----GISSPAIREIPDIERNGH 575
Query: 404 VVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVART 463
+DG G IS +A + N+D D+
Sbjct: 576 CF---------SDGVGKISPFVA----------QLVNEDMALDIFDK------------- 603
Query: 464 ESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNS 523
P Q R+ KG L + + +R S K +AD
Sbjct: 604 -------PSAFQFRM----GGCKGVLTVWPDAKGMEVHVRESQKKFEADS--------KG 644
Query: 524 LEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFN 583
LE+++ + T L+R I +L GVP F D+L L + A+++
Sbjct: 645 LEIIRCAGFATAT-LNRQTIIILESLGVPIKAFTDLLDQQLGSYEQAMQDNGVAIEMLAK 703
Query: 584 Y-GGMDYDFTSARMILSGISLDE---PYLQHRLSILMKEEKKSL-QAGKLPVTESYYLMG 638
+ + A ++ + DE P++ + LS+ K L + ++ V +S +++G
Sbjct: 704 FVDEHQTNLVIAELLKAEFKTDELREPFVINVLSLWRAWSLKILKEKARIQVEKSAFVLG 763
Query: 639 TVDPTGILKSN----------------EVCIILKDGQVSWEKV-------LVYRNPGLHF 675
VD T L+ + ++ + + D + ++ K +V RNP LH
Sbjct: 764 CVDETETLRGHSKDSEGSKPKDVNMLPQIFLQITDSR-NYNKTHIIQGVCIVGRNPSLHP 822
Query: 676 GDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKH 735
GDI V++A +L K + FP G R + + ++GGD DGD +FV P L+
Sbjct: 823 GDIRVVEAVDCSKLRHI----KDVVVFPATGDRPVPNMLSGGDLDGDDFFVIWEPSLI-- 876
Query: 736 FKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDR 795
+ W + + +A K +EL+ ++ L F K L D +
Sbjct: 877 ---PKTWNYSPMDYAAPKP------KELDRDVNVDDLRNFFV----KYLKNDKLPLIATS 923
Query: 796 FLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDES 855
L D+ M L L ++ A+D P K+G + D + K+P +M + +
Sbjct: 924 HLGFADQL----GPMSPKCLELAELHSKAVDYP-KTGEPATLRRDQQPRKWPHFMEKKQ- 977
Query: 856 VSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCFDDGV 894
+ S LG IY+ V + V + IW P FDD +
Sbjct: 978 -FYHSDKALGVIYDKVVNKAKVIQ-FNPIWDSP-FDDRI 1013
>gi|19114207|ref|NP_593295.1| RNA-directed RNA polymerase Rdp1 [Schizosaccharomyces pombe 972h-]
gi|59800170|sp|O14227.1|RDR1_SCHPO RecName: Full=RNA-dependent RNA polymerase 1; Short=Protein rdp1
gi|2330856|emb|CAB11093.1| RNA-directed RNA polymerase Rdp1 [Schizosaccharomyces pombe]
Length = 1215
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 107/424 (25%), Positives = 182/424 (42%), Gaps = 63/424 (14%)
Query: 486 KGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNS-LEVVKTSNQPRKTYLSRNLIA 544
KG L L PP ++ + V R ++F+S LEV+K S + +L+ LI
Sbjct: 649 KGVLSL---APPTKLEYHQGNL-VFPRRSQDKFKSFHSTLEVIKIS-RFSNAHLNMQLIT 703
Query: 545 LLSYGGVPEIFFLDILRNALDDAR-GVFSNKRNALKVSFNYGGMDYDFTSARMILSG-IS 602
LL GV + FL++ R+ L + S +++ L + N A I +G +
Sbjct: 704 LLEGLGVEKTVFLELTRSQLSKMNESINSKQKSILMLRDNVDEYHSTLIIADFIQAGFLE 763
Query: 603 LDEPYLQHRLSI-------LMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSN------ 649
D+ + ++ L++ L+KE++ K+ V + YL+G D TG LK +
Sbjct: 764 RDDAFTENLLNLYYEWVLRLIKEKQ------KVSVPKGAYLLGVADETGTLKGHYDDAVL 817
Query: 650 ---EVCIILKDGQVSWEK--------------VLVYRNPGLHFGDIHVLKATYVKELEDF 692
E+ I + D S+ +V RNP LH GD+ V KA EL
Sbjct: 818 SVPEIFIQITDTSTSFGSYSTGKLKTRVIVGLCIVARNPSLHPGDVRVCKAVRCDELMHL 877
Query: 693 VGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSAN 752
K I FP G RS+ +GGD DGD Y V + LL + +S
Sbjct: 878 ----KNVIVFPTTGDRSIPAMCSGGDLDGDEYTVIWDQRLLPKIVNYPPLLESSP----- 928
Query: 753 KRLIDF-SLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMK 811
K+ IDF + L + + F+N + ++ L ++ W+A D +
Sbjct: 929 KKSIDFLEGKPLIDSVKEFFVN--YIKYDSLGLISNAWKAWAH------DHDNNPEGIFG 980
Query: 812 ENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTV 871
L L ++ A+D KSG+ ++ +++P +M++ ++ SF S + +G I+
Sbjct: 981 NVCLELAEMHSKAVDFA-KSGVACKMQAKYHPKRYPDFMQKTKTRSFRSETAVGKIFRYA 1039
Query: 872 KSYE 875
++
Sbjct: 1040 ARFQ 1043
>gi|302907308|ref|XP_003049617.1| hypothetical protein NECHADRAFT_123067 [Nectria haematococca mpVI
77-13-4]
gi|256730553|gb|EEU43904.1| hypothetical protein NECHADRAFT_123067 [Nectria haematococca mpVI
77-13-4]
Length = 1261
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 121/498 (24%), Positives = 209/498 (41%), Gaps = 103/498 (20%)
Query: 256 DDNILLVKFDEELGGHRSSN---NWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEK 312
+D+ L V F +E G + N + D++S+Y ++ +GI + R Y F F
Sbjct: 459 NDSFLRVIFCDEDGQDLNFNPRIDNEDTFSRYRKVMDDGIDIAGRKYTFLGFSHS----- 513
Query: 313 KKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSL 372
S +F +S F+D YQ + + EA F +R + A +R+
Sbjct: 514 ----SLRSHSAWF----ASPFVDGNYQS-QTISVILEALGDFQDIRVPAKCA---ARIGQ 561
Query: 373 ILSKTMKLEVDF-SRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPT 431
S+T F + I I D + DG+ V+ DG I D ED+ + P
Sbjct: 562 AFSETPYAVPLFENSITTRHIPD--IKTADGSRVFSDGVGTISQDAL----EDVWMYLPM 615
Query: 432 YVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLL 491
C +Q+R + G KG L L
Sbjct: 616 RSAAPTC-----------------------------------LQIR--WGG--CKGMLSL 636
Query: 492 NKKLPPQTIQIRP-SMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGG 550
+ +L +T IR SM+K ++ DL++ L + TS++P + L+R +I +L G
Sbjct: 637 DTRLEGKTFCIRKESMMKFPSN-DLTE------LGICDTSSKPLRLVLNRQMIKILEDMG 689
Query: 551 VPEIFFLDILRNALDDARGVFSNKRN-ALKVSFNYGGMDYDFTSARMILSGISLD---EP 606
+F D+ AL+ RGV ++ N + + + G++ L + +D +
Sbjct: 690 TQNDWFFDLQNKALNVLRGVTASAHNTSTFLEYQTIGVNMGLPKLVKQLDRMGIDYRRDK 749
Query: 607 YLQHRLS-ILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCII------LKDGQ 659
+L+ + ++++E + ++PV + L G +D TG LK +V + +K+G+
Sbjct: 750 FLRSAVEHVVLRELRLLKHKARIPVEKGVTLFGVMDETGFLKERQVYVTYDKTYGVKNGR 809
Query: 660 ---VSWEK--VLVYRNPGLHFGDIHVL------KATYVKELEDFVGTSKYAIFFPCNGPR 708
+ E +LV R+P LH GDI V K ++ L++ I F G R
Sbjct: 810 RINATLEDGIILVTRSPALHPGDIQVAEMVTPPKGHPLRNLQN-------CIVFSQKGDR 862
Query: 709 SLADEIAGGDFDGDMYFV 726
L +++GGD DGD+Y +
Sbjct: 863 DLPSQLSGGDLDGDLYNI 880
>gi|66804721|ref|XP_636093.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
gi|60464394|gb|EAL62541.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
Length = 2417
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 119/476 (25%), Positives = 202/476 (42%), Gaps = 63/476 (13%)
Query: 475 QVRLFYNGTAVKGTLLLNKKLP-PQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQP 533
QVR+ N KG L++N + P P I IRPSM+K + G +LE+ S
Sbjct: 1373 QVRIGGN----KGVLVVNNQAPDPSGIYIRPSMVKFNP---IDCGDEHRTLEICSVSTTS 1425
Query: 534 RKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTS 593
R L+R +I+LLS G + F + + L+ + N NA K + D
Sbjct: 1426 R-CKLNRQVISLLSTLGTQDNVFFALQDHYLNQVAQIV-NDTNASKQAIVEFFPD----- 1478
Query: 594 ARMILSGISLDEPYLQHRLSILMKEEKKSLQAG-KLPVTESYYLMGTVDPTGILKSNEVC 652
I G +PY++ L L K + + +Q + + +S L+G DPT L N V
Sbjct: 1479 ---ITEGELYQDPYIRRILISLYKLKMERIQQKCHIEIKDSRMLLGVCDPTNSLPPNTVF 1535
Query: 653 IILKDGQV-------SWEKV-----LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAI 700
+ L++ +EKV +V +NP H GD+ LKA L + +
Sbjct: 1536 VQLEEEDEDDDDDGRKYEKVIEGLVMVIKNPCTHPGDVRYLKAVDNIRLRHL----RNVL 1591
Query: 701 FFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSL 760
F G EI+G D DGD YF + L+ + ESE + +S N +
Sbjct: 1592 VFSTKGDVPNFKEISGSDLDGDRYFFCYDKSLIGNRSESETAYLVVETVSNNDK------ 1645
Query: 761 EELESELFKLFLNTRFCPSNAKSLAADCWQ--AVMDRFLTLGDESAEEKAAMKENMLRLI 818
++ +F N F S+ S A+ + + L + D+ A + +++
Sbjct: 1646 ---KANVF----NDPFALSSMYSTNAERQELGKLYHSHLAISDQY----GANHKYSIQIS 1694
Query: 819 NIYYDALDAPKKSGIKVEVPEDLKVE----KFPCYMRRDES--VSFESTSVLGTIYNTVK 872
+ +D P K+GI +P+++ + +P YM+R+ S V ++S ++G +Y+ +
Sbjct: 1695 KECFKEIDYP-KTGIHGTIPKEVNIRLQTVGYPHYMQRENSTRVYYQSKKIMGKMYDQID 1753
Query: 873 SYEAVDRSVTEI-WKLPCFDDGVPEACMTKWKGYYDQYRWEMKEAIDKCTVEREEA 927
+ + I DG E + K Y QY+ ++ + + E EE+
Sbjct: 1754 QLVYIGDFLPNISLDKSNLVDGY-EIYLNSAKILYSQYKLQVHSLLRHYSAESEES 1808
>gi|452004258|gb|EMD96714.1| hypothetical protein COCHEDRAFT_106396 [Cochliobolus heterostrophus
C5]
Length = 931
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 130/280 (46%), Gaps = 25/280 (8%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P ++Q+R Y G KG L L+ L Q + +R SM K A +T+ LE+ +
Sbjct: 326 PTVLQIR--YRGA--KGVLSLDASLSDQQLHVRKSMTKYIAK------ETWRDLELCGAA 375
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALK-VSFNYGGMDY 589
+P +L+ I +L GVP FL + A++ + + + NA +++++ +
Sbjct: 376 YKPLSVFLNHQFIKILEDLGVPAENFLHVQDEAVNTLKLITEHPLNAASFLAYSHSCIFA 435
Query: 590 DFTSARMILSGISLD---EPYLQHRLSILMKEEKKSLQ-AGKLPVTESYYLMGTVDPTGI 645
++ I L + +L + + +SL+ ++P+ + Y L G +D T
Sbjct: 436 KVPQLFEMMHRIGLPFHADRFLTDIVEVAAMSSLRSLKYRARIPIEKGYLLYGVMDETNT 495
Query: 646 LKSNEVCIILKDGQVSWE---------KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTS 696
LK EV I +D + + +++V R P LH GDI ++ A V + + +
Sbjct: 496 LKYGEVYIATQDHDKTGKLKRSILVGNQIIVTRAPALHPGDIQLVDAVDVTD-DSPLRAL 554
Query: 697 KYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHF 736
I F GPR L +++GGD DGD++ + + L+ +
Sbjct: 555 HNCIVFSQQGPRDLPSQLSGGDLDGDLFHIIYDQRLIPAY 594
>gi|403377070|gb|EJY88529.1| Suppressor of ascus dominance [Oxytricha trifallax]
Length = 1160
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 102/437 (23%), Positives = 180/437 (41%), Gaps = 90/437 (20%)
Query: 484 AVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLI 543
KGTL++N++L + IQIR SM K + SD SL + + + P + + +R LI
Sbjct: 544 GCKGTLVVNQELQGEKIQIRKSMKKFEN----SD----TSLNIARCAT-PSQGFFNRQLI 594
Query: 544 ALLSYGGVPEIFFLDI------------------LRNALDDARGVFSNKR---------N 576
+L+ G I F DI N + D +FS ++ N
Sbjct: 595 SLIENQG---IIFEDIEQILESSDQLKFINQINSFENTIKDEDLIFSQQQAKISNLMLTN 651
Query: 577 ALKVSFNY-----GGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQ-AGKLPV 630
K NY M F RM + +P++++ +L + ++ G++P+
Sbjct: 652 TQKEFINYISESGQQMFKTFVEKRMDVQS----DPFIKNLSKLLSHQITSQIKNKGRIPI 707
Query: 631 TESYYLMGTVDPTGILKSNEVCIILKDGQVSWEK----------VLVYRNPGLHFGDIHV 680
+S L+G D +L+ E+ + ++D ++ E V++ R+P LH D+
Sbjct: 708 KDSAILIGVADYLQVLQPGEIFLQVQDPDINEESKDIYEVITGDVIITRSPCLHPNDVMK 767
Query: 681 LKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKES- 739
+KA + + + F NG + ++AGGD DGD++ + N L+ F
Sbjct: 768 VKAVNCNQYKHLNN----VVVFSANGDEPIQSQLAGGDLDGDVFHIIWNERLVSQFTPQF 823
Query: 740 -ERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLT 798
E+ SK + + +E+ L F N ++ L A+ D+
Sbjct: 824 LEKQKFDSKRIVGYQAKYTLIPQEIADSLLHFFKNNILGKIDSLHL------AICDK--- 874
Query: 799 LGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVP-------EDLKVEKFPCYMR 851
+S + A+ L + A+D +K G K ++ E L + FP YM+
Sbjct: 875 ---QSPNSQHALSTEFL-----HQQAVDF-QKHGCKPDIEEYHEIRNEGLDNQMFPDYMQ 925
Query: 852 RDESVSFESTSVLGTIY 868
S+ S ++GTIY
Sbjct: 926 SKSQDSYASQKIMGTIY 942
>gi|449467491|ref|XP_004151456.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
Length = 401
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 121/259 (46%), Gaps = 35/259 (13%)
Query: 636 LMGTVDPTGILKSNEVCIILKDGQVSWE-------KVLVYRNPGLHFGDIHVLKATYVKE 688
+MG +D T L+ +V + S E K++V +NP LH GD+ VL A VK
Sbjct: 1 MMGCLDETQTLEYGQVFVHCSIPGRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKA 60
Query: 689 LEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPEL--LKHFKESERWMSTS 746
L V + FP G R +E +G D DGD+YFV + EL +K K + +
Sbjct: 61 LHHMVD----CVVFPQKGKRPHPNECSGSDLDGDLYFVCWDTELTCIKQVKPMSYKPAPT 116
Query: 747 KNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEE 806
L D ++EE++ E F A + D A+ + D+++
Sbjct: 117 IQLDH-----DVTIEEVQ-EYF------------ANYMVNDGLGAIANAHTVFADKNS-- 156
Query: 807 KAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGT 866
K AM ++L ++ A+D P K+G+ +P +L+V ++P +M + ++ S VLG
Sbjct: 157 KKAMSVECIKLAKLFSIAVDFP-KTGVPANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGK 215
Query: 867 IYNTVKSYEAVDRSVTEIW 885
++ VK + D S EI+
Sbjct: 216 LFRGVKDVSS-DVSAFEIF 233
>gi|297748117|gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 132/536 (24%), Positives = 224/536 (41%), Gaps = 105/536 (19%)
Query: 362 SVANYMSRLSLILSKT-MKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGF 420
+VA +R+ S T +EV S +N E P +++G V +DG G
Sbjct: 546 NVAKCAARMGQCFSSTYATVEVPSSEVNSEL----PDIERNGYVF---------SDGIGM 592
Query: 421 ISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFY 480
IS DLA++ ++ L N PP Q+R Y
Sbjct: 593 ISADLAIEVA------------------EKLHLSVN-------------PPSAYQIR--Y 619
Query: 481 NGTAVKGTL-LLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVK-TSNQPRKTYL 538
G KG + K + +RPSM K ++ + LE+ T QP +L
Sbjct: 620 AGC--KGVVACWPTKNDGIRLSLRPSMKKFDSNHTI--------LEICSWTRFQP--GFL 667
Query: 539 SRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMIL 598
+R ++ LLS V + F ++ + + + + A V + T+A M+
Sbjct: 668 NRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDV-ITASCAEAGNTAALMLS 726
Query: 599 SGIS-LDEPYLQHRLSILMKEEKKSLQ-AGKLPVTESYYLMGTVDPTGILKSNEVCI--- 653
+G EP+L+ LS + + L+ ++ V +LMG +D G L+ + I
Sbjct: 727 AGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVS 786
Query: 654 -----------------ILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTS 696
I K+ QV V++ +NP LH GD+ +L+A V L
Sbjct: 787 SPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYD-- 844
Query: 697 KYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLI 756
+ FP G R ++E +G D DGD+YFV+ + L+ K+S W+ + + K+L
Sbjct: 845 --CLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKS--WIPMNYEPAEVKQL- 899
Query: 757 DFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLR 816
+ ++ F +K++ + + + + D S E A+ E L+
Sbjct: 900 --GRQVNHMDIIDFF---------SKNMVQESLGEICNAHVVHADLS--EFGALDEKCLK 946
Query: 817 LINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVK 872
L + A+D PK +G V +P DLK + +P +M ++E S++S +LG +Y VK
Sbjct: 947 LAELAALAVDFPK-TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVK 1001
>gi|358397216|gb|EHK46591.1| hypothetical protein TRIATDRAFT_317554 [Trichoderma atroviride IMI
206040]
Length = 1395
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 128/542 (23%), Positives = 215/542 (39%), Gaps = 113/542 (20%)
Query: 281 YSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFID--MGY 338
+ +Y +I ++GI V R + F F S +FV +AF+D M
Sbjct: 615 FERYRKILKDGIQVAGRKFEFLGFSHS---------SLRSHSAWFV----AAFVDDSMNL 661
Query: 339 QYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKT-MKLEVDFSRINIERIEDEPC 397
Q + T+ ++ F +R + A +R+ S+T + + INIE I+D
Sbjct: 662 Q---NNDTIIKSLGDFSDIRIAAKCA---ARIGQAFSETPYAVPILKCGINIEYIDD--V 713
Query: 398 RDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANF 457
+ DG V+ DG I D E++ P + C
Sbjct: 714 KTADGKRVFSDGVGTISWDAM----EEVWDHLPKASSEATC------------------- 750
Query: 458 SDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRP-SMIKVKADRDLS 516
+QVRL +KG L L+ +L + I +R SM+K S
Sbjct: 751 ----------------VQVRL----GGIKGMLSLDSRLNGKVICVRKESMMKFP-----S 785
Query: 517 DGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRN 576
QT + + T+++P +TYL+R I +L G +F+D AL+ R V + N
Sbjct: 786 KDQT--EMGICDTASKPMRTYLNRQTIKILEDMGTNSEWFIDQQNKALNVLRNVTTTAAN 843
Query: 577 ALKVSFN-YGGMDYDFTSARMILSGISLDEPYLQHRL------SILMKEEKKSLQAGKLP 629
N G LS I +D Y + R +++E + ++P
Sbjct: 844 TSTFLKNQMVGTTAGLPRLIRYLSTIGID--YRRERFMKKVVDHTILRELRLLKHKARIP 901
Query: 630 VTESYYLMGTVDPTGILKSNEVCII---------------LKDGQVSWEKVLVYRNPGLH 674
V L G +D TG L+ ++ + LKDG VLV R+P LH
Sbjct: 902 VDMGVTLFGVMDETGFLEEGQIYVTFNESHDHLQGRVKRSLKDG-----TVLVTRSPALH 956
Query: 675 FGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL- 733
GDI + + T + K + F G R L +++GGD DGD+Y V +P ++
Sbjct: 957 PGDIQLARMTTPPQGHPLRNL-KNCVVFSQKGSRDLPSQLSGGDLDGDLYNVFWDPFVIP 1015
Query: 734 -KHFKESERWMSTSKNLS---ANKRLIDFSLEELESELFKLFLNTRFCPSNAK---SLAA 786
++F ++ L + DF ++ +E+++ + N ++ + +L+A
Sbjct: 1016 KQYFGPADYPRVKPPELDRAVTRDDIADFFVKFMEADILGIIANRHQMLADYQDEGTLSA 1075
Query: 787 DC 788
DC
Sbjct: 1076 DC 1077
>gi|403346586|gb|EJY72692.1| Rna-dependent RNA polymerase [Oxytricha trifallax]
Length = 1470
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 106/406 (26%), Positives = 172/406 (42%), Gaps = 97/406 (23%)
Query: 409 GEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYG 468
E +I F E LK Y + +C + +D+ E+ N DV R +
Sbjct: 668 NENIIMRSMGDFSQEKNMLK--RYARRGQCFSTTKFILQLDKSEVTYNLPDVKRNGFIFT 725
Query: 469 E-----PPLLMQV-------------RLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVK 510
+ P L Q+ ++ + GT KG L+LN +L + IQ+R S IK +
Sbjct: 726 DGCGYISPELAQLIAEQFSFKRSSAFQIRFGGT--KGVLMLNPRLEGRQIQLRDSQIKFQ 783
Query: 511 ADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDAR-- 568
++ DL L VV+ + +L+R +I L++ GVPE FL++ R A + A+
Sbjct: 784 SN-DLG-------LNVVRCGTY-SQGFLNRQIIILMNCLGVPESVFLELQRKAKEYAQVQ 834
Query: 569 -----------------GVFSNKRNALK-----VSFNYGGMDYDFTSARM-ILSGISL-D 604
+ NK +L+ ++ + G + S + +L G ++ +
Sbjct: 835 EIYNNLIKKTSKAIKAFKLSQNKSKSLQQITKLINLSLGPSKWFEQSLKTALLCGYNIPN 894
Query: 605 EPYLQH-----RLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQ 659
+P +LS M +KK+ ++ + +S L+G VD GIL+ +EV I +K
Sbjct: 895 DPIFSSILYTMQLSSFMNLKKKA----RIIIPDSCVLLGIVDEFGILEEDEVFIQVKQDN 950
Query: 660 VSWEK---------------------------VLVYRNPGLHFGDIHVLKATYVKELEDF 692
S +K V+V RNP H GDI +LKA EL
Sbjct: 951 YSLKKKPWLWDINLNNQEELEKDSKPLQICQDVIVTRNPCTHPGDIRLLKAVNKPELSHL 1010
Query: 693 VGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKE 738
+ F G R +++AGGD DGD+YFV + +L H K+
Sbjct: 1011 FN----VVVFSSKGERPQCNKMAGGDLDGDVYFVCWDSLILSHIKK 1052
>gi|85110327|ref|XP_963405.1| hypothetical protein NCU08435 [Neurospora crassa OR74A]
gi|28881256|emb|CAD70515.1| related to RNA-directed RNA polymerase [Neurospora crassa]
gi|28925084|gb|EAA34169.1| predicted protein [Neurospora crassa OR74A]
Length = 1351
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 145/646 (22%), Positives = 259/646 (40%), Gaps = 114/646 (17%)
Query: 213 RMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGD--DNILLVKFDEELGG 270
R++ + G T +Y + T GP L + + + R+ + D+ L V+F EE G
Sbjct: 402 RLNEEIPPGLTKIYRA-LVTPTRIELHGPEL-EAKNRILRKFPEHQDHFLRVQFAEEDGQ 459
Query: 271 ---HRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVR 327
S+ + + Y ++ ++ GI VG R Y F F S S ++ + +
Sbjct: 460 DLFFNSAVSMDAIYQRFKDVLTNGISVGGRVYRFLGF------------SHSSLRAHSLW 507
Query: 328 MESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRI 387
+ + D Q L+ + + R + S A +R+ S+T V
Sbjct: 508 LAAPFIYDGKLQ--LASNIIED----LGDFRNIMSPARRAARIGQAFSET-PYSVSLYDH 560
Query: 388 NIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERS 447
I+ I RD N + +DG G IS+
Sbjct: 561 GIDVIRQ---RDVKRN-------ERVFSDGVGIISQG----------------------- 587
Query: 448 IDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMI 507
LE ++ ++ + P +QVR KG L L+ +L + I IR SM
Sbjct: 588 ----ALEVIHREIPESKGY----PNCLQVRW----AGAKGMLALDARLTGRQICIRDSME 635
Query: 508 KVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDA 567
K ++ + LE+ +++P L+R +I +L P +FL++ L
Sbjct: 636 KFRSRDE-------EHLEICDMASKPIPLMLNRQMIKILEDMRAPAQWFLELQEKELQRL 688
Query: 568 RGVFSNKRN-ALKVSFNYGGMDYDFTSARMILSGISLD---EPYLQHRL-SILMKEEKKS 622
R + N +N A + G + L +++D + +L+ + +++++E +
Sbjct: 689 RAITDNVQNVATFLKLQCVGDSVHLSQFLKDLDKMNIDYRRDQFLRGIVEAVVLRELRLL 748
Query: 623 LQAGKLPVTESYYLMGTVDPTGILKSNEVCIILK--DGQV----SWEKVLVYRNPGLHFG 676
++PV L G +D TG+L+ EV + + DG+ + V+V R+P LH G
Sbjct: 749 KHKARIPVPYGVTLFGVMDETGLLREGEVYVTFETVDGRFKDPPTAGPVVVTRSPALHPG 808
Query: 677 DIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHF 736
DI + + + K I F NG R L +++GGD DGD + V + ++
Sbjct: 809 DIQIAH-NAIPPAGHPLRELKNCIVFSQNGERDLPSQLSGGDLDGDTFNVIWDQSIV--- 864
Query: 737 KESERWMSTSKNLSAN--KRLIDFSL-EELESELFKLFLNTRFCPSNAKSLAADCWQAVM 793
+T + +A R+ L E+ES+ F + + AD +
Sbjct: 865 -------ATLRTFAAADYPRVEPLKLNREVESKDMADFF--------VEFMKADHLGVIA 909
Query: 794 DRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPE 839
R + L DE E + + L+L ++ A+D KSGI V++ E
Sbjct: 910 VRHMILADERNE--GTLDADCLKLAALHSKAVDF-SKSGIHVDITE 952
>gi|429860171|gb|ELA34917.1| suppressor of ascus dominance [Colletotrichum gloeosporioides Nara
gc5]
Length = 1353
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 153/649 (23%), Positives = 267/649 (41%), Gaps = 137/649 (21%)
Query: 257 DNILLVKFDEELG-GHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKD 315
D L V+F +EL G S++ + +S+ +GI +G R Y F F + E
Sbjct: 554 DRFLRVQFTDELYYGKIYSDSGEELFSRVYRTLAKGITIGSRHYEFLAFGNSQIRE---- 609
Query: 316 PSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILS 375
YF F ++ S + + F H++ +VA Y +R+ S
Sbjct: 610 -----CAVYF-------FCPTDHR---SCDCIRDWMGDFGHIK---NVAKYAARIGQCFS 651
Query: 376 KTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYK 435
T ++ + NI IED V ++G +DG G IS+ LA ++
Sbjct: 652 TTREIP-GTTVANIVPIED----------VERNG--FCFSDGVGKISQLLA-----HIVV 693
Query: 436 EKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKL 495
+ ++DD+ P Q R+ KG L +
Sbjct: 694 VEMSSDDACISV-----------------------PSAFQFRM----GGCKGMLAVWPDA 726
Query: 496 PPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIF 555
Q + IRPS K KA TFN LE++K + T L+R I +L+ GV
Sbjct: 727 KRQEVHIRPSQEKFKA--------TFNGLEIIKYAQHSIAT-LNRQTITVLTSLGVRAET 777
Query: 556 FLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMI-LSGISLDEPYLQHR--L 612
L + + + + +++ A + Y +D + TS + L G +P +Q L
Sbjct: 778 ILKLAERQIKNYQKAMNDRVAAASLLGQY--IDENLTSLTIKDLVGWGFMDPEIQEPFVL 835
Query: 613 SIL----MKEEKKSLQAGKLPVTESYYLMGTVDPTGIL----------KSNEV----CII 654
+IL + K + ++ V ES +L+G +D TG L K+N + +
Sbjct: 836 TILDLWRIWSMKLLKEKARVIVEESAFLLGCLDETGSLRGYSTATEGKKTNNIEDLPQVF 895
Query: 655 LK----DGQVSWEKV----LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNG 706
L+ G + V +V RNP LH GD+ V++A V +L + + FP NG
Sbjct: 896 LQVESPSGSGKFTCVTGLCIVGRNPSLHPGDLRVVEAVDVPQLHHL----RNVVVFPRNG 951
Query: 707 PRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLI---DFSLEEL 763
R + ++GGD DGD +FV N +L+ + W N + + D +++L
Sbjct: 952 DRDVPSMMSGGDLDGDDFFVMWNQDLI-----PKDWHQPPMNYTQPTPAVLRRDVQVKDL 1006
Query: 764 ESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYD 823
+ F+ R+ +++ +L A A D+ L LG + L+L ++
Sbjct: 1007 RT----FFV--RYMQNDSLALIATAHLAHADKSL-LG--------VKDQKCLQLAALHSK 1051
Query: 824 ALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVK 872
A+D K+G ++P L ++ P ++ ++ S++ LG +Y+ ++
Sbjct: 1052 AVDY-VKTGDPAKLPPALNPKERPHFL-GSRGQTYHSSTALGKLYDMIQ 1098
>gi|194719815|emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 100/396 (25%), Positives = 177/396 (44%), Gaps = 55/396 (13%)
Query: 500 IQIRPSMIKVKADRDLSDGQTFNSLEVVK-TSNQPRKTYLSRNLIALLSYGGVPEIFFLD 558
+ +RPSM K ++ + LE+ T QP +L+R ++ LLS V + F +
Sbjct: 638 LSLRPSMKKFDSNHTI--------LEICSWTRFQP--GFLNRQIVTLLSSLDVKDGIFWE 687
Query: 559 ILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGIS-LDEPYLQHRLSILMK 617
+ + + + + A V + T+A M+ +G EP+L+ LS +
Sbjct: 688 MQKEMISGLDKMLVDSDVAFDV-ITASCAEAGNTAALMLSAGFKPQSEPHLRGMLSSIRA 746
Query: 618 EEKKSLQ-AGKLPVTESYYLMGTVDPTGILKSNEVCI--------------------ILK 656
+ L+ ++ V +LMG +D G L+ + I I K
Sbjct: 747 SQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCFVKHGPKFSDIKK 806
Query: 657 DGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAG 716
+ QV V++ +NP LH GD+ +L+A V L + FP G R ++E +G
Sbjct: 807 NLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYD----CLVFPQKGDRPHSNEASG 862
Query: 717 GDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRF 776
D DGD+YFV+ + L+ K+S W+ + + K+L + ++ F
Sbjct: 863 SDLDGDLYFVTWDENLIPPSKKS--WIPMNYEPAEVKQL---GRQVNHMDIIDFF----- 912
Query: 777 CPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVE 836
+K++ + + + + D S E A+ E L+L + A+D PK +G V
Sbjct: 913 ----SKNMVQESLGEICNAHVVHADLS--EFGALDEKCLKLAELAALAVDFPK-TGKLVT 965
Query: 837 VPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVK 872
+P DLK + +P +M ++E S++S +LG +Y VK
Sbjct: 966 MPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVK 1001
>gi|451855231|gb|EMD68523.1| hypothetical protein COCSADRAFT_178332 [Cochliobolus sativus
ND90Pr]
Length = 1244
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 129/280 (46%), Gaps = 25/280 (8%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P ++Q+R Y G KG L L+ L Q + +R SM K A +T+ LE+ +
Sbjct: 639 PTVLQIR--YRGA--KGVLSLDASLSGQQLHVRKSMTKYIAK------ETWRDLELCGAA 688
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALK-VSFNYGGMDY 589
+P +L+ I +L GVP FLD+ A+ + + + NA +++++ +
Sbjct: 689 YKPLSVFLNHQFIKILEDLGVPAEKFLDVQDEAVKILKLITEHPLNAASFLAYSHSCVFA 748
Query: 590 DFTSARMILSGISLD---EPYLQHRLSILMKEEKKSLQ-AGKLPVTESYYLMGTVDPTGI 645
++ I L + +L + + +SL+ ++P+ + Y L G +D T
Sbjct: 749 KVPQLFEMMHRIGLSFHADRFLTDIVEVAAMSSLRSLKYRARIPIEKGYLLYGVMDETNT 808
Query: 646 LKSNEVCII---------LKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTS 696
LK EV I LK + +++V R P LH GD+ ++ A V + + +
Sbjct: 809 LKYGEVYIATEDHDKTGKLKRSILVGNQIVVTRAPALHPGDVQLVNAVDVPD-DSPLRAL 867
Query: 697 KYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHF 736
+ F GPR L +++GGD DGD++ + + L+ +
Sbjct: 868 HNCVVFSQQGPRDLPSQLSGGDLDGDLFHIIYDQRLIPAY 907
>gi|115437172|ref|NP_001043229.1| Os01g0527600 [Oryza sativa Japonica Group]
gi|113532760|dbj|BAF05143.1| Os01g0527600, partial [Oryza sativa Japonica Group]
Length = 385
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 104/215 (48%), Gaps = 35/215 (16%)
Query: 665 VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMY 724
V++ +NP LH GD+ +L+A V EL V + FP G R A+E +G D DGD+Y
Sbjct: 5 VVIAKNPCLHPGDVRILEAVDVPELHHLVD----CLVFPQKGERPHANEASGSDLDGDLY 60
Query: 725 FVSRNPELLKHFKESERWMSTS----KNLS---ANKRLIDFSLEELESELFKLFLNTRFC 777
FV+ + +L+ K+S M S K L + +IDF L+ + SE R C
Sbjct: 61 FVTWDEKLIPPGKKSWNPMDYSPPEAKQLPRQVSQHDIIDFFLKNMISENL-----GRIC 115
Query: 778 PSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEV 837
NA + AD E AM E + L + A+D PK + + +
Sbjct: 116 --NAHVVHADL----------------SEYGAMDEKCIHLAELAATAVDFPKTGKLAI-M 156
Query: 838 PEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVK 872
P LK + +P +M +++ S++S +LG +Y +++
Sbjct: 157 PPHLKPKVYPDFMGKEDGQSYKSEKILGRLYRSIQ 191
>gi|389746475|gb|EIM87655.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1279
Score = 86.7 bits (213), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 136/288 (47%), Gaps = 47/288 (16%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPP--QTIQIRPSMIKVKADRDLSDGQTFNSLEVVK 528
P Q+R+ KG L + L + + +RPS K + L+ L++
Sbjct: 678 PSCFQIRI----GGAKGVLFQDPTLAGLGRVVCLRPSQTKFENPEALT-------LDIAS 726
Query: 529 TSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNA---LDDARGVFSNKRNALKVSFNYG 585
TS +P + +L+R LI LL + GV + FL + ++A ++ AR F++ A K+ F++
Sbjct: 727 TSARPIRMFLNRPLILLLEFLGVQDDVFLSLQKDATAAVERARDSFTD---AAKL-FSHH 782
Query: 586 GMDYDFTSARM---ILSGISLDEPYLQ------------HRLSILMKEEKKSLQAGKLPV 630
G F A + ++S + LD+ LQ + + +++E K ++PV
Sbjct: 783 GFGSSFRLASLFNNLISELKLDDSDLQELGCQLITRTVEYAATHVLREIKFR---ARIPV 839
Query: 631 TESYYLMGTVDPTGILKSNEVCIILKDGQ----VSWE-KVLVYRNPGLHFGDIHVLKATY 685
S+ L+G D L+ E+ ++D + V E +VL+ R+P +H GD+ + A
Sbjct: 840 HGSWTLLGVSDEWSCLREGEIYATVRDERTGTYVPIEGRVLITRSPQIHPGDVQFVNAVR 899
Query: 686 VKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
+LE + F C G RSL + GGD DGD+Y + NP L
Sbjct: 900 HPKLEHL----NNVVVFSCEGDRSLPSMLGGGDLDGDIYNLILNPNLF 943
>gi|163930853|dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 86.3 bits (212), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 120/501 (23%), Positives = 210/501 (41%), Gaps = 91/501 (18%)
Query: 396 PCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEA 455
P R+ + + + + +DG G IS DLA++ ++ L
Sbjct: 568 PSREVNSELPDIERNGYVFSDGIGMISADLAIEVA------------------EKLHLSV 609
Query: 456 NFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTL-LLNKKLPPQTIQIRPSMIKVKADRD 514
N PP Q+R Y G KG + K + +RPSM K ++
Sbjct: 610 N-------------PPSAYQIR--YAGC--KGVVACWPTKNDGIRLSLRPSMKKFDSNHT 652
Query: 515 LSDGQTFNSLEVVK-TSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSN 573
+ LE+ T QP +L+R ++ LLS V + F ++ + + + +
Sbjct: 653 I--------LEICSWTRFQP--GFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVD 702
Query: 574 KRNALKVSFNYGGMDYDFTSARMILSGIS-LDEPYLQHRLSILMKEEKKSLQ-AGKLPVT 631
A V + T+A M+ +G EP+L+ LS + + L+ ++ V
Sbjct: 703 SDVAFDV-ITASCAEAGNTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVP 761
Query: 632 ESYYLMGTVDPTGILKSNEVCI--------------------ILKDGQVSWEKVLVYRNP 671
+LMG +D G L+ + I I ++ QV V++ +NP
Sbjct: 762 SGRWLMGCLDELGELEQGQCFIQVSSPSLENCFVKHGPKFSDIKQNLQVVKGLVVIAKNP 821
Query: 672 GLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPE 731
LH GD+ +L+A V L + FP G R ++E +G D DGD+YFV+ +
Sbjct: 822 CLHPGDVRILEAVDVPSLSHLYD----CLVFPQKGDRPHSNEASGSDLDGDLYFVTWDEN 877
Query: 732 LLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQA 791
L+ K+S W+ + + K+L + ++ F +K++ +
Sbjct: 878 LIPPSKKS--WIPMNYEPAEVKQL---GRQVNHMDIIDFF---------SKNMVQESLGE 923
Query: 792 VMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMR 851
+ + + D S E A+ E L+L + A+D PK +G V +P DLK + +P +M
Sbjct: 924 ICNAHVVHADLS--EFGALDEKCLKLAELAALAVDFPK-TGKLVTMPFDLKPKMYPDFMG 980
Query: 852 RDESVSFESTSVLGTIYNTVK 872
++E S++S +LG +Y VK
Sbjct: 981 KEEFQSYKSKKILGKLYRQVK 1001
>gi|226596555|gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
Length = 1197
Score = 86.3 bits (212), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 131/536 (24%), Positives = 224/536 (41%), Gaps = 105/536 (19%)
Query: 362 SVANYMSRLSLILSKT-MKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGF 420
+VA +R+ S T +EV S +N E P +++G V +DG G
Sbjct: 546 NVAKCAARMGQCFSSTYATVEVPSSEVNSEL----PDIERNGYVF---------SDGIGM 592
Query: 421 ISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFY 480
IS DLA++ ++ L N PP Q+R Y
Sbjct: 593 ISADLAIEVA------------------EKLHLSVN-------------PPAAYQIR--Y 619
Query: 481 NGTAVKGTL-LLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVK-TSNQPRKTYL 538
G KG + K + +RPSM K ++ + LE+ T QP +L
Sbjct: 620 AGC--KGVVACWPTKNDGIRLSLRPSMKKFDSNHTI--------LEICSWTRFQP--GFL 667
Query: 539 SRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMIL 598
+R ++ LLS V + F ++ + + + + A V + T+A M+
Sbjct: 668 NRQIVTLLSSLDVKDGIFWEMQKEMIAGLDKMLVDSDVAFDV-ITASCAEAGNTAALMLS 726
Query: 599 SGIS-LDEPYLQHRLSILMKEEKKSLQ-AGKLPVTESYYLMGTVDPTGILKSNEVCI--- 653
+G EP+L+ LS + + L+ ++ V +LMG +D G L+ + I
Sbjct: 727 AGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVS 786
Query: 654 -----------------ILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTS 696
I K+ QV V++ +NP LH GD+ +L+A V L
Sbjct: 787 SPSLENCFVKHGSKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYD-- 844
Query: 697 KYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLI 756
+ FP G R ++E +G D DGD+YFV+ + ++ K+S W+ + + K+L
Sbjct: 845 --CLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENIIPPSKKS--WIPMNYEPAEVKQL- 899
Query: 757 DFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLR 816
+ ++ F +K++ + + + + D S E A+ E L+
Sbjct: 900 --GRQVNHMDIIDFF---------SKNMVQESLGEICNAHVVHADLS--EFGALDEKCLK 946
Query: 817 LINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVK 872
L + A+D PK +G V +P DLK + +P +M ++E S++S +LG +Y VK
Sbjct: 947 LAELAALAVDFPK-TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVK 1001
>gi|302678369|ref|XP_003028867.1| hypothetical protein SCHCODRAFT_236896 [Schizophyllum commune H4-8]
gi|300102556|gb|EFI93964.1| hypothetical protein SCHCODRAFT_236896 [Schizophyllum commune H4-8]
Length = 711
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 115/244 (47%), Gaps = 24/244 (9%)
Query: 497 PQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFF 556
P I +RPSM R G T LE+ + +PR L+R+ I LL GV F
Sbjct: 203 PMKIALRPSM------RKYPGGPTV--LEIHSVARRPRSARLNRHFIILLLTLGVRLEAF 254
Query: 557 LDILRNALDDARGVFSNKR---NALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRLS 613
+LR L+ + ++++ +AL+ + G +D ++L+G L EP+++
Sbjct: 255 ESLLRANLEFIDLIMTSRQRALDALEAELDADGAGFDQELHDLLLAGFQLSEPHVR---C 311
Query: 614 ILMKEEKKSLQAGK----LPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEKVLVYR 669
+L + +K+SL + + V S+YL G D G+L+ EV I + G V VLV R
Sbjct: 312 LLERLQKRSLDVLRKKLNIRVKNSFYLFGVCDELGVLREGEVYINVA-GDVKLGTVLVGR 370
Query: 670 NPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRN 729
NP + VL+A L + I F G RS ++ GD DGD ++V+
Sbjct: 371 NPAYSTSVLRVLQAVNRPGLSHL----RNCIVFASGGARSETSKMQ-GDVDGDNFWVTTE 425
Query: 730 PELL 733
P L+
Sbjct: 426 PSLI 429
>gi|281205109|gb|EFA79302.1| hypothetical protein PPL_07720 [Polysphondylium pallidum PN500]
Length = 3481
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 122/252 (48%), Gaps = 27/252 (10%)
Query: 500 IQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDI 559
I +RPSM K +AD Q N + + + N +L+R +I LLS GVP+ +FL +
Sbjct: 1352 IYLRPSMKKFQADL----TQQHNCILEIISINGDNPCHLNRQVINLLSGLGVPDQYFLRL 1407
Query: 560 LRNALDDARGVFSNKRNALKVSFNYGGM----DYDFTSARMILSGISLDEPYLQHRLSIL 615
+ AL D + N +++ S + + D S MI S + +L ++ SI
Sbjct: 1408 QKEALMDLADLLHNPAESIRCSEDLPWLRTIEKEDLRSDPMIRSLV-----HLVYQKSIA 1462
Query: 616 MKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIIL---KDGQ--VSWEKVLVYRN 670
+K +P+ ++G +D TG+L++ +V I + K+GQ V V V +N
Sbjct: 1463 EYSDK-----CFIPIANGKTIIGVLDETGLLEAGQVYINIYNTKNGQSMVIQGAVAVCKN 1517
Query: 671 PGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNP 730
P LH GD+ +L+ T ++ L K + F G + +G D DGD YF+ +P
Sbjct: 1518 PCLHPGDVRILQGTDIELLSHL----KNVVVFSARGDNPDFKKCSGSDLDGDRYFICYDP 1573
Query: 731 ELLKHFKESERW 742
E++ ++ E +
Sbjct: 1574 EVISTVRQYEDY 1585
>gi|167995454|gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
Length = 1197
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 99/396 (25%), Positives = 177/396 (44%), Gaps = 55/396 (13%)
Query: 500 IQIRPSMIKVKADRDLSDGQTFNSLEVVK-TSNQPRKTYLSRNLIALLSYGGVPEIFFLD 558
+ +RPSM K ++ + LE+ T QP +L+R ++ LLS V + F +
Sbjct: 638 LSLRPSMKKFDSNHTI--------LEICSWTRFQP--GFLNRQIVTLLSSLDVKDGIFWE 687
Query: 559 ILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGIS-LDEPYLQHRLSILMK 617
+ + + + + A V + T+A M+ +G EP+L+ LS +
Sbjct: 688 MQKEMISGLDKMLVDSDVAFDV-ITASCAEAGNTAAIMLSAGFKPQSEPHLRGMLSSIRA 746
Query: 618 EEKKSLQ-AGKLPVTESYYLMGTVDPTGILKSNEVCI--------------------ILK 656
+ L+ ++ V +LMG +D G L+ + I I K
Sbjct: 747 SQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCFIKHGPKFSDIKK 806
Query: 657 DGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAG 716
+ QV V++ +NP LH GD+ +L+A V L + FP G R ++E +G
Sbjct: 807 NLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGLHHLYD----CLVFPQKGDRPHSNEASG 862
Query: 717 GDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRF 776
D DGD+YFV+ + L+ K+S W+ + + K++ + ++ F
Sbjct: 863 SDLDGDLYFVTWDENLIPPSKKS--WIPMNYEPAEVKQM---GRQVNHMDIIDFF----- 912
Query: 777 CPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVE 836
+K++ + + + + D S E A+ E L+L + A+D PK +G V
Sbjct: 913 ----SKNMVQESLGEICNAHVVHADLS--EFGALDEKCLKLAELAALAVDFPK-TGKLVT 965
Query: 837 VPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVK 872
+P DLK + +P +M ++E S++S +LG +Y VK
Sbjct: 966 MPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVK 1001
>gi|113205254|gb|ABI34311.1| RNA dependent RNA polymerase family protein [Solanum demissum]
Length = 963
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 166/717 (23%), Positives = 275/717 (38%), Gaps = 148/717 (20%)
Query: 209 QEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGD-DNILLVKF-DE 266
Q + S+ D G ++ + T F GP +N + L+ D DN L V F DE
Sbjct: 189 QPPKSPSITLDDGLVYVRRVLV-TPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDE 247
Query: 267 E--------LGGHRSSNNW--NDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDP 316
E L S+ N + Y + R+G ++G + F F
Sbjct: 248 EWEKLYSTELLPKASTGNGIRTNIYERILSTLRKGFVIGDKKIEFLAF------------ 295
Query: 317 STSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSK 376
S+S ++ V M +S G T ++ R + +VA Y +RL
Sbjct: 296 SSSQLRDNSVWMFASR----------PGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGS 345
Query: 377 TMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKE 436
+ K + R IE I D V G + + +DG G IS D A + +
Sbjct: 346 S-KETLSVLRHEIEVIPD----------VKVHGTSYVFSDGIGKISADFARRVAS----- 389
Query: 437 KCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLP 496
KC + P Q+R Y G KG + ++
Sbjct: 390 KCGLQYT---------------------------PSAFQIR--YGG--YKGVVAVDP-YS 417
Query: 497 PQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSN-QPRKTYLSRNLIALLSYGGVPEIF 555
+ +R SM K ++D N L+V++ S QP YL+R LI LLS GV +
Sbjct: 418 SMKLSLRKSMSKYESDN--------NKLDVLEWSKYQP--CYLNRQLITLLSTLGVKDDV 467
Query: 556 FLDILRNALDDARGVFSNKRNALK-VSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSI 614
+ A+D + + A + + G + + A + + EP+L L
Sbjct: 468 LEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQT 527
Query: 615 LMKEEKKSLQA-GKLPVTESYYLMGTVDPTGILKSNEVCIILKD-GQVSWEK-------- 664
+ L+ ++ + +MG +D + L+ +V + G + +
Sbjct: 528 FRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNS 587
Query: 665 ------------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLAD 712
V+V +NP LH GDI VL+A V L V + FP G R +
Sbjct: 588 RSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVD----CVVFPQKGKRPHPN 643
Query: 713 EIAGGDFDGDMYFVSRNPELL--KHFKESERWMSTSKNLSANKRLIDFSLEELESELFKL 770
E +G D DGD+YFV + +++ + + E + S L D ++EE+E
Sbjct: 644 ECSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQLDH-----DVTIEEVEEYFTNY 698
Query: 771 FLNTRF-CPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPK 829
+N SNA + AD E AM + +L + A+D P
Sbjct: 699 IVNDSLGIISNAHVVFAD----------------REPDMAMSDPCKKLAELCSIAVDFP- 741
Query: 830 KSGIKVEVPEDLKVEKFPCYM-RRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIW 885
K+G+ E+P L+ +++P +M + + ++ S V+G ++ VK +A S T I+
Sbjct: 742 KTGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKD-KAPQASSTAIF 797
>gi|395334238|gb|EJF66614.1| RdRP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 1233
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 93/378 (24%), Positives = 167/378 (44%), Gaps = 50/378 (13%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P QVR + G+ KG L ++ KL I +RPSMIK D +EV +
Sbjct: 641 PRAFQVR--FQGS--KGMLSVDYKLTDNAIMLRPSMIKF-------DDSKSAIVEVARAF 689
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYG-GMDY 589
++P YL+R LI LL GVP F + +A+ DA+ ++ + + K+ ++G G+ +
Sbjct: 690 DRPGAYYLNRPLIMLLEGLGVPYTTFKKLQDDAVRDAQTSVTSLKLSAKLFEDHGLGVSF 749
Query: 590 DFTSARMILSGISL----DEPYLQHRLSILMKEEKKSLQA-GKLPV--TESYYLMGTVDP 642
+ L + L D+ + + + + + L+ ++PV T+S+ L+G D
Sbjct: 750 RIAPVMLGLHKLGLGPLDDDIFWRQMMDFAVNHVLRELKHRARIPVPGTDSWTLVGVADI 809
Query: 643 TGILKSNEVCIILKDGQVSWEKVLVY--------RNPGLHFGDIHVLKATYVKELEDF-- 692
LK E+ + + + EK L++ R+P +H GD+ + A
Sbjct: 810 HRELKEGEIFVCVDSPK---EKGLIFLEGPCVVSRSPTIHPGDVQIATAIGRPRPGSHYD 866
Query: 693 VGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSAN 752
V + + + F G R L + GGD DGD Y V+ P+L+ +R + A
Sbjct: 867 VESLRNTVVFSTTGSRPLPSCLGGGDLDGDEYNVTTRPDLMP-----KRTYDPASYEPAP 921
Query: 753 KRLIDF-SLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMK 811
++++D S + +E F++ S+ + A W L D++ + +
Sbjct: 922 RKMVDHESTMDDVAEFVAEFIS-----SDTLGIIATNW-------LITADQTNDTDGILN 969
Query: 812 ENMLRLINIYYDALDAPK 829
+ LRL ++ A+D K
Sbjct: 970 PDCLRLAELHSLAVDYAK 987
>gi|353235420|emb|CCA67433.1| related to RNA-directed RNA polymerase (RdRP) [Piriformospora
indica DSM 11827]
Length = 1169
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 129/543 (23%), Positives = 224/543 (41%), Gaps = 93/543 (17%)
Query: 222 KTHMYHCHIST--KGNCTFKGPYLNQTRTHLQ--RELGDDNILLVKFDEELGGH-RSSNN 276
++ ++ CH +T + GP ++T ++ R G N + V F EE H R N
Sbjct: 377 ESGVFECHRATVTPSSVVLTGPLPDETNRVIRKYRAYGH-NFIRVDFTEEDRLHLRKEKN 435
Query: 277 WNDSY---SKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAF 333
+ + + E + G+ V R + + +E +F+ + F
Sbjct: 436 VDLTAILDDRIGEFMKNGLSVAGRKFELLAYSSSALKEHA---------VWFM----TPF 482
Query: 334 IDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIE 393
QYI S +++ + F V + A Y +RLS S T E + + ++ I
Sbjct: 483 TTSDGQYITS-ESIRRSLGDFSKV--IYCPARYGARLSQAFSST---EPSIT-VRVDEIR 535
Query: 394 DEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKEL 453
P ++ D +Y TDG G IS A KE + +R+ L
Sbjct: 536 FIPDKESDYGSLY--------TDGVGTISPQAA--------KEIWHKYTESRSKRNRRRL 579
Query: 454 EANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADR 513
+ P Q+RL +KG L ++ +L + I +R SM K +D
Sbjct: 580 KR---------------PSAFQIRL----GGLKGMLCVDNRLRGRVICVRESMNKFHSDD 620
Query: 514 DLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALL-SYGGVPEIFFLDILRNALDDARGVFS 572
+E+ + ++P +L+R LI LL + VP F+ + A+++ R
Sbjct: 621 --------REVEIARVFDRPMAMFLNRPLIMLLETLKKVPLEPFMALQTKAVEETRDAMK 672
Query: 573 NKRNALKVSFNYG-GMDYDFTSARMILS--GISLDE--------PYLQHRLSILMKEEKK 621
+ A ++ YG G + TS + L G+SL P+L L + +
Sbjct: 673 SFDAAARILERYGLGTAFRLTSVFLQLHKLGVSLALKDRSQGLLPFLGRMLQFVENHILR 732
Query: 622 SLQ-AGKLPVTESYYLMGTVDPTGILKSNEVCIILK--DGQVSWEK--VLVYRNPGLHFG 676
L+ ++PV ++ L+G D L NE+ ++ DG+ + + V++ R+P +H G
Sbjct: 733 DLKYKARIPVPNAWTLVGVSDEYDYLGENEIYARVRTIDGEEQYLEGPVMISRSPTVHPG 792
Query: 677 DIHVLKATYVKELEDFVGTSKYA--IFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLK 734
D ++ A G + + FPC G SL +AGGD DGD+Y + +P+L
Sbjct: 793 DARMVWAIGKPSRGAPPGLEELTNCVVFPCKGHPSLPQCLAGGDLDGDLYCLVLDPQL-- 850
Query: 735 HFK 737
HF+
Sbjct: 851 HFR 853
>gi|398389633|ref|XP_003848277.1| RNA-directed RNA polymerase [Zymoseptoria tritici IPO323]
gi|339468152|gb|EGP83253.1| RNA-directed RNA polymerase [Zymoseptoria tritici IPO323]
Length = 1234
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 132/278 (47%), Gaps = 31/278 (11%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P ++Q+R KG + L+ +L + + +R SM K + +T LE+ +
Sbjct: 612 PTILQIRF----QGCKGMVSLDTRLRGKCLALRKSMRKFQT-------ETTWDLEICGAA 660
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYD 590
+P L+R + G+P F+D+ + ++D R + + N + N+
Sbjct: 661 FRPLPMILNRQFTKIFEDLGIPLSVFMDLQQKSVDKLRRMTHSAIN----TANFLDETEC 716
Query: 591 FTSARM-----ILSGISLD---EPYLQHRLSILMKEEKKSLQ-AGKLPVTESYYLMGTVD 641
+AR+ L + LD +P+L + + + + + + ++ G++P+ + L G +D
Sbjct: 717 TKAARVPSLIRYLGQMGLDYRHDPFLYNVVEMSVVSKLRDIKYRGRIPIDDGVTLYGIMD 776
Query: 642 PTGILKSNEVCIILKDGQVSWEKVL------VYRNPGLHFGDIHVLKATYVKELEDFVGT 695
TG+LK+NE+ ++ + + VL V R+P +H GD+ ++ A V +
Sbjct: 777 ETGVLKANEIFVVTEKAPLGGRSVLVRNNVIVTRSPAMHPGDVQIVNAVDVPQGSPLRQL 836
Query: 696 SKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
S + F +G R L ++GGD DGD+Y V P+L+
Sbjct: 837 SN-VVVFSQHGDRDLPSMLSGGDLDGDIYNVIWLPQLV 873
>gi|169844306|ref|XP_001828874.1| RNA-directed RNA polymerase 2 [Coprinopsis cinerea okayama7#130]
gi|116509986|gb|EAU92881.1| RNA-directed RNA polymerase 2 [Coprinopsis cinerea okayama7#130]
Length = 1232
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 125/572 (21%), Positives = 224/572 (39%), Gaps = 101/572 (17%)
Query: 283 KYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYIL 342
++ E G+ + R + F + +E +FV+ F+D + +
Sbjct: 487 RFGEFLLNGLTIAKRHFRFLAYSQSALKEHS---------VWFVK----PFVDTKHGLVN 533
Query: 343 SGKTVH--------EARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIED 394
+ +H + MH A Y +RLS + T D I +E I
Sbjct: 534 AESIIHSLGNFDGLDFDSQLMHC-----PARYAARLSQAFTAT-----DACIIEVEEI-- 581
Query: 395 EPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELE 454
+D VV +G+ TDG G +S +LA + ++ + K
Sbjct: 582 --INGRDIEVVSPEGQKYCFTDGVGTLSPELAREIWKHLKRTK----------------- 622
Query: 455 ANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRD 514
R S G P QVR KG L ++ +L TI +RPSMIK +A
Sbjct: 623 ------RRARSVKGHP-AAYQVRFM----GSKGMLSVDYRLQGSTIYLRPSMIKFEAPNS 671
Query: 515 LSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNK 574
++E+ ++ ++P +L+R LI LL GVP F A+ + + S+
Sbjct: 672 -------RAIEIARSFDRPTPYFLNRPLITLLEGLGVPLSTFKFFQDRAVRETQQAASSL 724
Query: 575 RNALKVSFNYG-GMDYDFTSARMILSGISL----DEPYLQHRLSILMKEEKKSLQ-AGKL 628
A + YG G + S L+ + + + +L + + + L+ ++
Sbjct: 725 ATAAAMLDTYGLGASFRLPSVMNSLNKLGIPVLNQDRFLSRAMEYAINHILRLLKNHARI 784
Query: 629 PVTESYYLMGTVDPTGILKSNEVCIILKD----GQVSWEKVLVYRNPGLHFGDIHVLKAT 684
PV ++ L+G D L+ ++ +K G VL+ R+P +H GD+ +++A
Sbjct: 785 PVPGAWTLVGVADVHRFLQPRQIFAYVKPLNSRGIYLEGPVLISRSPTIHPGDVQLVQAI 844
Query: 685 YVKELEDFVGTSKYA--IFFPCNGPRSLADEIAGGDFDGDMYFV-----SRNPELLKHFK 737
+ A + F G R L + GGD DGD+Y + + PE L+ F
Sbjct: 845 GHPPPDSPFAHEPLANTVVFSVLGDRPLPSCLGGGDLDGDIYNLIPLEDPQRPE-LRGFT 903
Query: 738 ESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFL 797
+ S+ A ++++D + F + + S+ + A W L
Sbjct: 904 PVRPLQAPSQYAPAQRKILDRKATMRDVAEFVM----EYILSDVLGIIAINW-------L 952
Query: 798 TLGDESAEEKAAMKENMLRLINIYYDALDAPK 829
+ D+S + + L+L +++ DA+D PK
Sbjct: 953 IIADQSP--RGIYDSDCLKLADLHSDAVDYPK 982
>gi|340517754|gb|EGR47997.1| predicted protein [Trichoderma reesei QM6a]
Length = 1250
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 103/410 (25%), Positives = 179/410 (43%), Gaps = 74/410 (18%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRP-SMIKVKADRDLSDGQTFNSLEVVKT 529
P +QVRL +KG L L+ +L + I IR SM+K S QT L + T
Sbjct: 622 PTCLQVRL----GGIKGMLSLDSRLKGKVICIRKESMMKFS-----SSDQTM--LGICDT 670
Query: 530 SNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRN-ALKVSFNYGGMD 588
+++P + L+R +I +L G +F+D ALD R V + N + + + G
Sbjct: 671 ASKPLRFVLNRQIIKILEDMGTNAEWFIDQQNKALDVLRNVTATAVNTSTFLEYQLVGTT 730
Query: 589 YDFTSARMILSGISLD---EPYLQHRLSILMKEEKKSLQ-AGKLPVTESYYLMGTVDPTG 644
LS I +D + +++ + + EE + L+ ++PV + L G +D TG
Sbjct: 731 VGLPKLIKYLSKIGVDYRRDNFMKTVVDHTILEELRLLKHKARIPVDQGVTLFGIMDETG 790
Query: 645 ILKSNEVCII---------------LKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKE- 688
L+ E+ + LKDG V L+ R+P LH GDI + E
Sbjct: 791 FLEEGEIYVTFDQQYDKVQGRVKHSLKDGLV-----LITRSPALHPGDIQPAQMRTPPEG 845
Query: 689 --LEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL-KHFKES---ERW 742
L D K + F G R L +++GGD DGD+Y + +P ++ K F + R
Sbjct: 846 HPLHDL----KNCVVFSQKGTRDLPSQLSGGDLDGDLYNIFWDPRVIPKQFFTAASYPRV 901
Query: 743 MSTSKNLSANK-RLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGD 801
+ + + + + DF + +E+++ + +N ++AD
Sbjct: 902 IPPPLDRAVTRDDIADFFVTFMETDILGMI-------ANRHQVSAD-------------- 940
Query: 802 ESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKF-PCYM 850
A+E+ + + ++L ++ A+D K+GI V V + K + P +M
Sbjct: 941 --AKEEGTLHQECIKLAELHSTAVDY-SKTGIPVTVQQLPKAPRMRPDFM 987
>gi|113205271|gb|AAT38699.2| RNA dependent RNA polymerase family protein [Solanum demissum]
Length = 963
Score = 84.7 bits (208), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 159/703 (22%), Positives = 273/703 (38%), Gaps = 145/703 (20%)
Query: 209 QEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGD-DNILLVKF-DE 266
Q + S+ D G ++ + T F GP +N + L+ D DN L V F DE
Sbjct: 189 QPPKSPSITLDDGLVYVRRVLV-TPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDE 247
Query: 267 E--------LGGHRSSNNW--NDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDP 316
E L S+ N + Y + R+G ++G + + F F
Sbjct: 248 EWEKLYSTELLPKASTGNGIRTNIYERILSTLRKGFVIGDKKFEFLAF------------ 295
Query: 317 STSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSK 376
S+S ++ V M +S G T ++ R + +VA Y +RL
Sbjct: 296 SSSQLRDNSVWMFASR----------RGLTTNDIRSWMGDFSQIKNVAKYAARLGQSFGS 345
Query: 377 TMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKE 436
+ + + R IE I D V G + + +DG G IS D A + +
Sbjct: 346 SRE-TLSVLRHEIEVIPD----------VKVHGTSYVFSDGIGKISADFARRVAS----- 389
Query: 437 KCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLP 496
KC + P Q+R Y G KG + ++
Sbjct: 390 KCGLQYT---------------------------PSAFQIR--YGG--YKGVVAVDP-YS 417
Query: 497 PQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSN-QPRKTYLSRNLIALLSYGGVPEIF 555
+ +R SM K ++D N L+V+ S QP YL+R L+ LLS GV +
Sbjct: 418 SMKLSLRKSMSKYESDN--------NKLDVLGWSKYQP--CYLNRQLVTLLSTLGVKDDV 467
Query: 556 FLDILRNALDDARGVFSNKRNALK-VSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSI 614
+ A+ + + A + + G + + A + + EP+L L
Sbjct: 468 LEQKQKEAVHQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQT 527
Query: 615 LMKEEKKSLQA-GKLPVTESYYLMGTVDPTGILKSNEVCIILKD-GQVSWEK-------- 664
+ L+ ++ + +MG +D + L+ +V + G + +
Sbjct: 528 FRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNS 587
Query: 665 ------------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLAD 712
V+V +NP LH GDI VL+A V L V + FP G R +
Sbjct: 588 RSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVD----CVVFPQKGKRPHPN 643
Query: 713 EIAGGDFDGDMYFVSRNPELL--KHFKESERWMSTSKNLSANKRLIDFSLEELESELFKL 770
E +G D DGD+YFV + +++ + + E + S L N ++EE+E E F
Sbjct: 644 ECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHN-----VTIEEVE-EYF-- 695
Query: 771 FLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKK 830
T + +++ + A+ DR E AM + +L ++ A+D P K
Sbjct: 696 ---TNYIVNDSLGIIANAHVVFADR---------EPDMAMSDPCKKLAELFSIAVDFP-K 742
Query: 831 SGIKVEVPEDLKVEKFPCYMRR-DESVSFESTSVLGTIYNTVK 872
+G+ E+P L+ +++P +M + + ++ S V+G ++ VK
Sbjct: 743 TGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVK 785
>gi|402218300|gb|EJT98377.1| RdRP-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 908
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 105/426 (24%), Positives = 176/426 (41%), Gaps = 73/426 (17%)
Query: 470 PPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKT 529
P + Q RL N KG L LN LP +Q+RPSM K A L LE+ K+
Sbjct: 335 PATVFQFRLGGN----KGLLSLNPLLPGLVMQVRPSMNKFDAPDSLG-------LEIAKS 383
Query: 530 SNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVS-----FNY 584
+PR +L+R I LL GV FL + RNA+ + V +K + ++ S +
Sbjct: 384 FERPRPFFLNRPFIMLLESRGVHADVFLTLQRNAV---KAVEDSKSSLIRASIMTETYGL 440
Query: 585 GGMDYDFTSARMILSGISLD-----------EPYLQHRLSILMKEEKKSLQ-AGKLPVTE 632
GG + R I + LD +P+L+H + + + ++ ++PV
Sbjct: 441 GGTFWIRLILRNIHDILGLDFEAGQGLTTFYDPFLKHIIDVGKANALREIRFRARIPVPN 500
Query: 633 SYYLMGTVDPTGILKSNEVCIILK---DGQVSW--EKVLVYRNPGLHFGDIHVLKAT--Y 685
S+ L+G D +L NE+ + D + W +V ++P L GD +
Sbjct: 501 SWTLIGVADEHDVLGKNEIYACIHKPGDPEPHWIEGPAIVTKSPSLGPGDAQFVTGIGRP 560
Query: 686 VKELEDFVGTS--KYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWM 743
+ +G K + F C G R + + GGD DGD + V + L +
Sbjct: 561 PPDCPFMLGPYPLKNCVVFSCRGVRPIPSMLGGGDLDGDEFNVVQYSSLFPQYPADPDDY 620
Query: 744 STSKNLSANK-----RLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLT 798
+ ++ ++ +IDF ++ + ++L LA + L
Sbjct: 621 TAAERAELDRDCTMNDVIDFIIDYVNNDL-------------VGRLATE--------HLI 659
Query: 799 LGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKV---EVPEDLKVEKFPCYMRRDES 855
L D+ + N +L +Y ALD K+G + ++P L K P Y++R++
Sbjct: 660 LADQHPD--GVKYSNCHQLAQLYALALDF-AKTGTPIDQDQIPSLLNDMK-PDYLQREQQ 715
Query: 856 VSFEST 861
V +ST
Sbjct: 716 VGKQST 721
>gi|290988183|ref|XP_002676801.1| predicted protein [Naegleria gruberi]
gi|284090405|gb|EFC44057.1| predicted protein [Naegleria gruberi]
Length = 1650
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 124/478 (25%), Positives = 201/478 (42%), Gaps = 81/478 (16%)
Query: 497 PQTIQIR----PSMIKVKADRDLSDG---------------QTFNSLEVVKTSNQPRKTY 537
P +QIR ++ V D DL DG + N +E+V + + Y
Sbjct: 421 PTALQIRFLGFKGVLSVLPDEDLGDGMDVILRESMCKFNGKEELNKIELVSCTTARKPAY 480
Query: 538 LSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMI 597
L++ +I LL+ G+ + FL I + D ++ + LKV MD A
Sbjct: 481 LNKQIILLLTTLGITKETFLSIFLDYFKDLSEKITSPKYFLKV-LKENCMDT--LPAIQS 537
Query: 598 LSGISLDEPYLQHRLSILMKEEKKSLQA-GKLPVTESYYLMGTVDPTGILKSNEVCIILK 656
L+ + DE +LQ+ L+ +E K +Q +P+ ++ M VD LK NEV + L
Sbjct: 538 LNEMPDDE-FLQYLARYLIYDEIKKVQTKAMIPIEKAVIAMSIVDEYKQLKENEVMVQLG 596
Query: 657 DGQVSWE--KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEI 714
DG + +V + RNP LH DI L S AI FP G S I
Sbjct: 597 DGNYIEDGTQVFICRNPCLHPSDIQTFTCRDNSLLRSKYRPSNAAIIFPTQGYTS----I 652
Query: 715 AGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNT 774
DFDGD FV + L+ +S L+ + ++ + E SE+ L
Sbjct: 653 KICDFDGDRVFVCWDSRLIPD------QVSNLSPLTHDNEPMESTTE--HSEVLSKIL-- 702
Query: 775 RFCPSNAKSLA--ADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSG 832
N K L +D W A++D E A+ A L L +++ A+D P K+G
Sbjct: 703 ----ENGKLLGKISDAWVAIVD------SEGADSDRA-----LELADLFVKAVDFP-KNG 746
Query: 833 IKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCFDD 892
++ +P K +P +M R +S S++G IY S + + +K P F
Sbjct: 747 KQISLPNWFKDIIYPDFMERGSISI-KSNSIIGRIYEKCTS---IKSGIPSEFKEPEF-- 800
Query: 893 GVPEACMTKWKGYYDQYRWEMKEAIDK---CT---------VEREEAAELVIEKYKQI 938
+ + + +W + W++ E + + CT +ER+E L IE++++I
Sbjct: 801 IIQDEKVNEWNRRF----WQIIEYLKQVHYCTLFDLFVGNGIERKEFTHL-IEQFREI 853
>gi|408389379|gb|EKJ68835.1| hypothetical protein FPSE_11001 [Fusarium pseudograminearum CS3096]
Length = 1277
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 126/560 (22%), Positives = 220/560 (39%), Gaps = 107/560 (19%)
Query: 203 GRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGD--DNIL 260
RK+ + DR K + ++ + T GP +++ + R+ D D L
Sbjct: 418 ARKDDPERDRIYGGKLPPNQIWVFKA-LVTPTRLLLDGPEA-ESKNRVLRKYADYNDYFL 475
Query: 261 LVKFDEELGG----HRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDP 316
V F EE G H +N YS++ + GI + R + F F
Sbjct: 476 RVLFCEEDGQDLRFHPKVDN-EPIYSQFRRMMDHGIQIAGRKFDFLGFSHS--------- 525
Query: 317 STSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSK 376
S +F S+ F+D +Q + S + + +A F +R + A +R+ S+
Sbjct: 526 SLRSHSAWF----SAPFVDKDHQ-LQSPEAILQALGDFRDIRVPAKCA---ARIGQAFSE 577
Query: 377 TMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKE 436
T V S NI + +DG+ V+ +DG G IS++ Y+
Sbjct: 578 T-PYAVPISENNIVPRYIPDVKSEDGSRVF--------SDGVGTISQEALESIWPYL--- 625
Query: 437 KCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLP 496
S P +Q+R + G KG L L+ +L
Sbjct: 626 ----------------------------SMNSAAPTCLQIR--WGG--CKGMLSLDTRLE 653
Query: 497 PQTIQIRP-SMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIF 555
+ IR SM+K K+ + L + T+++P + L+R +I +L G + +
Sbjct: 654 GKVFCIRQESMMKFKS-------EDTGELGICDTASKPLRLVLNRQMIKILEDMGTRDEW 706
Query: 556 FLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRL--- 612
F ++ NALD R V ++ N + + + R++ +D Y + +
Sbjct: 707 FFELQNNALDILRNVTADATNTSSF-LEHHAIGINMGLPRLVKQLEKMDIDYRRDKFLKA 765
Query: 613 ---SILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCII--------------- 654
++++E + ++PV L G +D TG LK EV +
Sbjct: 766 AVEHVVLRELRLLKHKARIPVDNGVTLFGIMDETGFLKEGEVYVTYDKTYGRNNGRGIKS 825
Query: 655 -LKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADE 713
L DG++ +V R+P LH GDI ++K + + + + I F G R L
Sbjct: 826 TLTDGEI-----IVTRSPALHPGDIQLVKQVTPPQGHS-LRSLQNCIIFSQKGKRDLPSM 879
Query: 714 IAGGDFDGDMYFVSRNPELL 733
++GGD DGD+Y + +PE +
Sbjct: 880 LSGGDLDGDIYNIIWDPEAM 899
>gi|142942515|gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 1065
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 165/717 (23%), Positives = 274/717 (38%), Gaps = 148/717 (20%)
Query: 209 QEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGD-DNILLVKF-DE 266
Q + S+ D G ++ + T F GP +N + L+ D DN L V F DE
Sbjct: 340 QPPKSPSITLDDGLVYVRRVLV-TPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDE 398
Query: 267 E--------LGGHRSSNNW--NDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDP 316
E L S+ N + Y + ++G ++G + + F F
Sbjct: 399 EWEKLYSTELLPKASTGNGIRTNIYERILSTMQKGFVIGDKKFEFLAF------------ 446
Query: 317 STSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSK 376
S+S ++ V M +S G T ++ R + +VA Y +RL
Sbjct: 447 SSSQLRDNSVWMFASR----------PGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGS 496
Query: 377 TMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKE 436
+ K + R IE I D V G + + +DG G IS D A + +
Sbjct: 497 S-KETLSVLRHEIEVIPD----------VKVHGTSYVFSDGIGKISADFARRVAS----- 540
Query: 437 KCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLP 496
KC + P Q+R Y G KG + ++
Sbjct: 541 KCGLQYT---------------------------PSAFQIR--YGG--YKGVVAVDP-YS 568
Query: 497 PQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSN-QPRKTYLSRNLIALLSYGGVPEIF 555
+ +R SM K ++D N L+V+ S QP YL+R LI LLS GV +
Sbjct: 569 SMKLSLRKSMSKYESDN--------NKLDVLGWSKYQP--CYLNRQLITLLSTLGVKDDI 618
Query: 556 FLDILRNALDDARGVFSNKRNALK-VSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSI 614
+ A+D + + A + + G + + A + + EP+L L
Sbjct: 619 LEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQT 678
Query: 615 LMKEEKKSLQA-GKLPVTESYYLMGTVDPTGILKSNEVCIILKD-GQVSWEK-------- 664
+ L+ ++ + +MG +D + L+ +V + G + +
Sbjct: 679 FRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNS 738
Query: 665 ------------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLAD 712
V+V +NP LH GDI VL+A V L V + FP G R +
Sbjct: 739 RSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVD----CVVFPQKGKRPHPN 794
Query: 713 EIAGGDFDGDMYFVSRNPELL--KHFKESERWMSTSKNLSANKRLIDFSLEELESELFKL 770
E +G D DGD+YFV + +++ + + E + S L D ++EE+E
Sbjct: 795 ECSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQLDH-----DVTIEEVEEYFTNY 849
Query: 771 FLNTRF-CPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPK 829
+N SNA + AD E AM + +L + A+D P
Sbjct: 850 IVNDSLGIISNAHVVFAD----------------REPDMAMSDPCKKLAELCSIAVDFP- 892
Query: 830 KSGIKVEVPEDLKVEKFPCYMRR-DESVSFESTSVLGTIYNTVKSYEAVDRSVTEIW 885
K+G+ E+P + +++P +M + + ++ S V+G +Y VK +A S T I+
Sbjct: 893 KTGVPAEIPSQWRPKEYPDFMDKPPDKTTYISERVIGKLYRKVKD-KAPQASSTAIF 948
>gi|46109400|ref|XP_381758.1| hypothetical protein FG01582.1 [Gibberella zeae PH-1]
Length = 1467
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 128/286 (44%), Gaps = 41/286 (14%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRP-SMIKVKADRDLSDGQTFNSLEVVKT 529
P +Q+R + G KG L L+ +L + IR SM+K K+ + L + T
Sbjct: 632 PTCLQIR--WGG--CKGMLSLDTRLEGKVFCIRQESMMKFKS-------EDTGELGICDT 680
Query: 530 SNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDY 589
+++P + L+R +I +L G + +F ++ NALD R V ++ N + +
Sbjct: 681 ASKPLRLVLNRQMIKILEDMGTRDEWFFELQNNALDILRNVTADATNTSSF-LEHQAIGI 739
Query: 590 DFTSARMILSGISLDEPYLQHRL------SILMKEEKKSLQAGKLPVTESYYLMGTVDPT 643
+ R++ +D Y + + ++++E + ++PV L G +D T
Sbjct: 740 NMGLPRLVKQLEKMDIDYRRDKFLKAAVEHVVLRELRLLKHKARIPVDNGVTLFGIMDET 799
Query: 644 GILKSNEVCII----------------LKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVK 687
G LK EV + L DG++ +V R+P LH GDI ++K
Sbjct: 800 GFLKEGEVYVTYDKTYGRNNSRGIKSTLTDGEI-----IVTRSPALHPGDIQLVKQVTPP 854
Query: 688 ELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
+ + + + I F G R L ++GGD DGD+Y + +PE +
Sbjct: 855 QGHS-LRSLQNCIVFSQKGKRDLPSMLSGGDLDGDIYNIIWDPEAM 899
>gi|426198551|gb|EKV48477.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
Length = 1258
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 161/713 (22%), Positives = 263/713 (36%), Gaps = 141/713 (19%)
Query: 225 MYHC-HIS-TKGNCTFKGPYLNQTRTHLQRELGDDNILL-VKFDEELGGHRSSNNWN--- 278
++ C H++ T +GPY Q+ +++ G + + V F +E R WN
Sbjct: 422 IFRCRHVTFTPTRMLMEGPYATQSNRIIRQYSGYEEFFIRVDFRDE---DRLQYRWNREV 478
Query: 279 DSYSKYNE----IAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFI 334
D S E I ++G + R + F + E +F M
Sbjct: 479 DGASFVRERVGTILKDGFTIAGRQFEFLAYSSSALREHA---------VWF--MCPFEHH 527
Query: 335 DMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIED 394
D Y + S K + E F + + Y +RL+ + T + V R E IED
Sbjct: 528 DPKYGRVDSMK-IREQIGNFKGTDLMKQPSKYAARLAQAFTAT-EASVSIKRDEWEEIED 585
Query: 395 -EPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTND-DSTERSIDRKE 452
+P + +DG + TDG G IS+ L K ++ E C+N D E SI
Sbjct: 586 IKPPKFEDGK-----PNPYLFTDGVGSISKSLGDK----IWAELCSNRRDHGENSIQ--- 633
Query: 453 LEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKAD 512
P Q+R V L+K + +++R SM K
Sbjct: 634 ------------------PSAYQIRFLGYKGVVAVDEQLDKTGAGKHMRLRNSMRKFLVV 675
Query: 513 RDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFS 572
D +E+ + P + YL+R L+ LL GV FL + + AR +
Sbjct: 676 ND-----DVAPIEIAQAFAHPNRCYLNRPLVMLLEDLGVNVDAFLTLQDKEVAKARTIHD 730
Query: 573 NKRNALKVSFNYG-GMDYDFTSARMILSGISL------------DEPYLQHRLSILMKEE 619
+ L V +G G + F+ L G+ L D P+L+ + M +
Sbjct: 731 SIDRFLSVISEHGLGRSFRFSYLVKQLQGLGLEINSKDPDKLNVDTPFLKQVREVAMMDV 790
Query: 620 KKSLQ-AGKLPVTESYYLMGTVD----------------PTGILKSNEVCII-LKDGQVS 661
+ ++ + ++ V +S+ L+G D P G + + C+ DG+
Sbjct: 791 MRDIKHSARILVPDSHLLVGIADEGPAYVSAGFENVYCLPPGFIYA---CVQESPDGKAE 847
Query: 662 W--EKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTS--KYAIFFPCNGPRSLADEIAGG 717
W LV R+P H GD+ ++A S K A+ G RSLA + GG
Sbjct: 848 WLEGHCLVTRSPVAHIGDVQRVRAIGKPPQGKLCLFSHIKNALVMSSQGNRSLASCLGGG 907
Query: 718 DFDGDMY-FVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRF 776
D DGD++ + P L ++ + S + +D
Sbjct: 908 DVDGDLFQVIQYEPLLPMTYELPMEYESVGTKAITTECTVD-----------------DI 950
Query: 777 CPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKE-NMLRLINIYYDALDAPKKSGIKV 835
C + + +D + DR L + D+S K M + + +RL + A+D PK
Sbjct: 951 CDFVVEYINSDVLGLLSDRLLMIADQS---KLGMNDKDCIRLAELCSQAVDYPKNG---- 1003
Query: 836 EVPEDLKVEKFPCYMRR-------------DESVSFESTSVLGTIYNTVKSYE 875
+P DL EK P + R E+ + ST LG +Y + E
Sbjct: 1004 -IPVDLNKEKLPHTLIRCKPDWHAAEVVSPRETDYYRSTRALGELYRNISLTE 1055
>gi|142942402|gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 1115
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 159/703 (22%), Positives = 273/703 (38%), Gaps = 145/703 (20%)
Query: 209 QEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGD-DNILLVKF-DE 266
Q + S+ D G ++ + T F GP +N + L+ D DN L V F DE
Sbjct: 341 QPPKSPSITLDDGLVYVRRVLV-TPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDE 399
Query: 267 E--------LGGHRSSNNW--NDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDP 316
E L S+ N + Y + R+G ++G + + F F
Sbjct: 400 EWEKLYSTELLPKASTGNGIRTNIYERILSTLRKGFVIGDKKFEFLAF------------ 447
Query: 317 STSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSK 376
S+S ++ V M +S G T ++ R + +VA Y +RL
Sbjct: 448 SSSQLRDNSVWMFASR----------RGLTTNDIRSWMGDFSQIKNVAKYAARLGQSFGS 497
Query: 377 TMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKE 436
+ + + R IE I D V G + + +DG G IS D A + +
Sbjct: 498 SRE-TLSVLRHEIEVIPD----------VKVHGTSYVFSDGIGKISADFARRVAS----- 541
Query: 437 KCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLP 496
KC + P Q+R Y G KG + ++
Sbjct: 542 KCGLQYT---------------------------PSAFQIR--YGG--YKGVVAVDP-YS 569
Query: 497 PQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSN-QPRKTYLSRNLIALLSYGGVPEIF 555
+ +R SM K ++D N L+V+ S QP YL+R L+ LLS GV +
Sbjct: 570 SMKLSLRKSMSKYESDN--------NKLDVLGWSKYQP--CYLNRQLVTLLSTLGVKDDV 619
Query: 556 FLDILRNALDDARGVFSNKRNALK-VSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSI 614
+ A+ + + A + + G + + A + + EP+L L
Sbjct: 620 LEQKQKEAVHQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQT 679
Query: 615 LMKEEKKSLQA-GKLPVTESYYLMGTVDPTGILKSNEVCIILKD-GQVSWEK-------- 664
+ L+ ++ + +MG +D + L+ +V + G + +
Sbjct: 680 FRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNS 739
Query: 665 ------------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLAD 712
V+V +NP LH GDI VL+A V L V + FP G R +
Sbjct: 740 RSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVD----CVVFPQKGKRPHPN 795
Query: 713 EIAGGDFDGDMYFVSRNPELL--KHFKESERWMSTSKNLSANKRLIDFSLEELESELFKL 770
E +G D DGD+YFV + +++ + + E + S L N ++EE+E E F
Sbjct: 796 ECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHN-----VTIEEVE-EYF-- 847
Query: 771 FLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKK 830
T + +++ + A+ DR E AM + +L ++ A+D P K
Sbjct: 848 ---TNYIVNDSLGIIANAHVVFADR---------EPDMAMSDPCKKLAELFSIAVDFP-K 894
Query: 831 SGIKVEVPEDLKVEKFPCYMRR-DESVSFESTSVLGTIYNTVK 872
+G+ E+P L+ +++P +M + + ++ S V+G ++ VK
Sbjct: 895 TGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVK 937
>gi|189200837|ref|XP_001936755.1| RNA-dependent RNA polymerase [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187983854|gb|EDU49342.1| RNA-dependent RNA polymerase [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 953
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 126/280 (45%), Gaps = 25/280 (8%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P ++Q+R KG L L++ L + + IR SM K A +T+ LE+ +
Sbjct: 326 PTILQIRF----RGAKGVLSLDESLVGEQLHIRQSMTKYIAK------ETWRDLELCGAA 375
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALK-VSFNYGGMDY 589
+P + +L+ I +L GVP F + A++ + + + NA + +++ G+
Sbjct: 376 YKPLQVFLNHQFIKILEDLGVPARNFKAVQDEAVNALKMITEHPLNAASFLEYSHSGVYA 435
Query: 590 DFTSARMILSGISLD---EPYLQHRLSILMKEEKKSLQ-AGKLPVTESYYLMGTVDPTGI 645
++ I L + +L + + +SL+ ++P+ + + L G +D T
Sbjct: 436 KVPRLFELMHQIGLSFHADRFLTDIVEVAAMTNLRSLKYRARIPIEQGHLLYGIMDETNF 495
Query: 646 LKSNEVCIILKDGQVSW---------EKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTS 696
L+ +V I +D S E++++ R P LH GD+ ++ A V E
Sbjct: 496 LQEGQVYIATQDYDKSGKLRRRILVGERIVITRAPALHPGDVQLVTAVDVPEHSSLRALH 555
Query: 697 KYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHF 736
+ F G R L +++GGD DGD++ + + L+ F
Sbjct: 556 N-CVVFSQRGARDLPSQLSGGDLDGDLFHIIYDQRLIPDF 594
>gi|346973013|gb|EGY16465.1| RNA-dependent RNA polymerase [Verticillium dahliae VdLs.17]
Length = 1310
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 79/301 (26%), Positives = 136/301 (45%), Gaps = 47/301 (15%)
Query: 447 SIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRP-S 505
+I R LE + + R ES P +Q+R + G VKG L L+ +LP + + IR S
Sbjct: 602 TISRDALETIWPHLPRMESL----PTCLQIR--WGG--VKGMLSLDSRLPGRVMNIRQES 653
Query: 506 MIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALD 565
M+K + ++L + +++P + L+R +I +L GV + +F + + L+
Sbjct: 654 MLKFPS-------TDLDNLGICGAASRPLRMVLNRQMIKILEDMGVRDEWFFSLQKRELE 706
Query: 566 DARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRL---------SILM 616
R V ++ N G+ F + I + LD+ + +R ++++
Sbjct: 707 RLRAVTADAWNT-GAFLQLQGIGSAFYLSTFIKT---LDKYGINYRRDDFLRCTVEAVVL 762
Query: 617 KEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILK---------DGQVSWEKVLV 667
+E + ++PV + L G +D TG L EV + D +S +LV
Sbjct: 763 RELRLLKHKARIPVPQGVTLFGIMDETGFLSEGEVYVCYDSRYNGSLPIDSTLSDGNILV 822
Query: 668 YRNPGLHFGDIHVLKATYVKELEDFVGTS----KYAIFFPCNGPRSLADEIAGGDFDGDM 723
R+P LH GDI +V+ VG + I F +G R L +++GGD DGD+
Sbjct: 823 TRSPALHPGDIQ-----WVRMRTPPVGHPLRDLRNCIVFSQHGERDLPSQLSGGDLDGDL 877
Query: 724 Y 724
Y
Sbjct: 878 Y 878
>gi|380493792|emb|CCF33621.1| RNA dependent RNA polymerase, partial [Colletotrichum higginsianum]
Length = 1278
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 141/614 (22%), Positives = 245/614 (39%), Gaps = 136/614 (22%)
Query: 262 VKFDEELGGHRSSN---NWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPST 318
V F +E GG N +++ + +Y E+ GI + R Y F F S
Sbjct: 480 VTFCDEDGGDLFFNPRVSYDQIFDRYREVLNGGIPIAGRIYQFLGFSHS---------SL 530
Query: 319 SPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTM 378
+F S+ F+D G + L G + +A F H+ + A +R+ S+T
Sbjct: 531 RSHSAWF----SAPFVDDGGKLQLYGNII-KALGDFEHIEIPAKCA---ARIGQAFSETP 582
Query: 379 K-LEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEK 437
+++ +RI I D +D D V+ +DG G IS+D+
Sbjct: 583 TFIKLAENRIRHSNIPDVKSQDGDIERVF--------SDGVGTISQDV------------ 622
Query: 438 CTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPP 497
LE + + R P +Q+R VKG L L+ +L
Sbjct: 623 ---------------LELVWPRLPRGSL----IPTCLQIRW----GGVKGMLSLDSRLMG 659
Query: 498 QTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFL 557
+TI +R ++ D+ + LE+ +++P K L+R +I ++ GV FL
Sbjct: 660 RTICVRRESMEKFPSNDVEN------LEICDAASRPLKLVLNRQMIKIMEDLGVDSNLFL 713
Query: 558 DILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMI--LSGISLD---EPYLQHRL 612
+ + +D R V ++ N + G+ F +I L +D + +L+ +
Sbjct: 714 QLQKKEVDRLRAVTADAYNT-GTFLHLQGVGSTFFLPSLIKSLKNYGIDYRRDSFLRAVV 772
Query: 613 -SILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCII---------------LK 656
S +++E + ++PV E L G +D TG L+ EV + L+
Sbjct: 773 ESTVLQELRLLKHKARIPVPEGATLFGIMDETGFLREGEVYVCYDTYKRPGKSPMKNSLR 832
Query: 657 DGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTS----KYAIFFPCNGPRSLAD 712
DG VLV R+P LH GDI YV G + I F G R L
Sbjct: 833 DG-----PVLVTRSPALHPGDIQ-----YVNMRTPPPGHPLRNLRNCIAFSQRGHRDLPS 882
Query: 713 EIAGGDFDGDMYFV--SRNPELLKHFKESERWMSTSKNLS---ANKRLIDFSLEELESEL 767
++GGD DGD+Y + + + FK ++ T + L K + ++ ++ ++S++
Sbjct: 883 MLSGGDLDGDLYNIIWDKAAAPKRTFKAADYPRVTPEPLGRPVERKDMANWFVDFMKSDV 942
Query: 768 FKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDA 827
L + R L L D+ + + ++ L+L ++ A+D
Sbjct: 943 LGL---------------------IATRHLILSDQ--DPVGTLGQDCLKLAGLHSTAVDF 979
Query: 828 PKKSGIKVEVPEDL 841
K+G+ VE P D+
Sbjct: 980 -SKTGVAVE-PRDI 991
>gi|409079686|gb|EKM80047.1| hypothetical protein AGABI1DRAFT_72859 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1258
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 161/710 (22%), Positives = 260/710 (36%), Gaps = 135/710 (19%)
Query: 225 MYHC-HIS-TKGNCTFKGPYLNQTRTHLQRELGDDNILL-VKFDEELGGHRSSNNWN--- 278
++ C H++ T +GPY Q+ +++ G + + V F +E R WN
Sbjct: 422 IFRCRHVTFTPTRMLMEGPYATQSNRIIRQYSGYEEFFIRVDFRDE---DRLQYRWNREV 478
Query: 279 DSYSKYNE----IAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFI 334
D S E I ++G + R + F + E +F M
Sbjct: 479 DGASFVRERVGTILKDGFTIAGRQFEFLAYSSSALREHA---------VWF--MCPFEHH 527
Query: 335 DMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIED 394
D Y + S K + E F + + Y +RL+ + T + V R E IED
Sbjct: 528 DPKYGRVDSMK-IREQIGNFKGTDLMKQPSKYAARLAQAFTAT-EASVSIKRDEWEEIED 585
Query: 395 -EPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTND-DSTERSIDRKE 452
+P +DG + TDG G IS+ L K ++ E C+N D E SI
Sbjct: 586 IKPPNFEDGK-----PNPYLFTDGVGSISKSLGDK----IWAELCSNRRDHGENSIQ--- 633
Query: 453 LEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKAD 512
P Q+R V L+K + +++R SM K
Sbjct: 634 ------------------PSAYQIRFLGYKGVVAVDEQLDKTGAGKHMRLRNSMRKFLVV 675
Query: 513 RDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFS 572
D +E+ + P + YL+R L+ LL GV FL + + AR +
Sbjct: 676 ND-----DVAPIEIAQAFAHPNRCYLNRPLVMLLEDLGVNVDAFLTLQDKEVAKARTIHD 730
Query: 573 NKRNALKVSFNYG-GMDYDFTSARMILSGISL------------DEPYLQHRLSILMKEE 619
+ L V +G G + F+ L G+ L D P+L+ + M +
Sbjct: 731 SIDRFLSVISEHGLGRSFRFSYLVKQLQGLGLEINSKDPDKLNVDTPFLKQVREVAMMDV 790
Query: 620 KKSLQ-AGKLPVTESYYLMGTVD--PTGILKSNEVCIILK------------DGQVSW-- 662
+ ++ + ++ V +S+ L+G D P + E L DG+ W
Sbjct: 791 MRDIKHSARILVPDSHLLVGIADEGPAYVSAGFENVYCLPPGFIYACVQESPDGKAEWLE 850
Query: 663 EKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTS--KYAIFFPCNGPRSLADEIAGGDFD 720
LV R+P H GD+ ++A S K A+ G RSLA + GGD D
Sbjct: 851 GHCLVTRSPVAHIGDVQRVRAIGKPPQGKLCLFSHIKNALVMSSQGNRSLASCLGGGDVD 910
Query: 721 GDMY-FVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPS 779
GD++ + P L ++ + S + +D C
Sbjct: 911 GDLFQVIQYEPLLPMTYELPMEYESVGTKAITTECTVD-----------------DICDF 953
Query: 780 NAKSLAADCWQAVMDRFLTLGDESAEEKAAMKE-NMLRLINIYYDALDAPKKSGIKVEVP 838
+ + +D + DR L + D+S K M + + +RL + A+D PK +P
Sbjct: 954 VVEYINSDVLGLLSDRLLMIADQS---KLGMNDKDCIRLAELCSQAVDYPKNG-----IP 1005
Query: 839 EDLKVEKFPCYMRR-------------DESVSFESTSVLGTIYNTVKSYE 875
DL EK P + R E+ + ST LG +Y + E
Sbjct: 1006 VDLNKEKLPHTLIRCKPDWHAAEVVSPRETDYYRSTRALGELYRNISLTE 1055
>gi|322705481|gb|EFY97066.1| suppressor of ascus dominance [Metarhizium anisopliae ARSEF 23]
Length = 1315
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 149/663 (22%), Positives = 263/663 (39%), Gaps = 150/663 (22%)
Query: 248 THLQRELGDDNILLVKFDEE-----LGGHRSSNNWNDSYSKYNEIAREGILVGLRCYHFF 302
+HLQ D L V+F EE LG + N+ + + +GI +G R Y F
Sbjct: 477 SHLQ-----DRFLRVQFVEESELVRLGKTKYKND--KIWKRVERALSQGIRIGDRQYEFL 529
Query: 303 VFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSS 362
F G + ++ YF F G+ LS + + F H++ V
Sbjct: 530 AF---GSSQLRQS------SAYF-------FCPTGH---LSCEDIRAWMGQFDHIKCV-- 568
Query: 363 VANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFIS 422
A Y +R+ S T ++ + +I+ I+D D+ TDG G IS
Sbjct: 569 -AKYAARIGQCFSTTRDIKGIWVP-DIKYIDDIQRNDQ------------CFTDGVGLIS 614
Query: 423 EDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNG 482
+ L+ + +E+ + D P Q R+
Sbjct: 615 KFLS--------------------QLIMEEMTLDIFD----------KPTAFQFRM---- 640
Query: 483 TAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNL 542
KG L + + + IR S K K+D F LE+V+ + + T L+R
Sbjct: 641 GGCKGVLAVWPQAQGMEVHIRNSQEKFKSD--------FQGLEIVRCAARSTAT-LNRQT 691
Query: 543 IALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTS---ARMILS 599
I +L GVP+ F+ +L+ + + A+K+ + +D + +S A ++ +
Sbjct: 692 ITILESLGVPKKMFMALLKEQISWYENAAKDTSEAIKLLTKF--VDENQSSLVLAELLKA 749
Query: 600 GISLD---EPYLQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKSNEV---- 651
G D EP+ + ++ + + L + ++ V +S +++G VD +G L+ + +
Sbjct: 750 GFMTDNVREPFTLNTFNLWLSWSFRLLREKTRIHVPKSAFVLGCVDESGSLRGHSIETEG 809
Query: 652 C-----------IILKDGQVSWE--------KVLVYRNPGLHFGDIHVLKATYVKELEDF 692
C I L+ S E K +V RNP LH GDI V++A +L
Sbjct: 810 CSDQLNENKLPQIFLQLTDPSHEGKTNIIQGKCIVGRNPSLHPGDIRVVQAVNNPKLRHL 869
Query: 693 VGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSA- 751
K I FP G R + ++GGD DGD +F+ + L+ + W + A
Sbjct: 870 ----KDVIVFPSKGDRPVPAMLSGGDLDGDDFFIIWDDRLI-----PKEWNHKPMDYQAP 920
Query: 752 NKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMK 811
N R +D + +L + F+N + ++ L A A A+
Sbjct: 921 NPRQLDRDV--TVDDLREFFVN--YMKNDNLGLIAVAHLAF-----------ADMHGPKS 965
Query: 812 ENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTV 871
+ LRL ++ A+D K+G E ++ E++P +M + ++ S LG +++ V
Sbjct: 966 QICLRLAELHSQAVDY-AKTGEPAEFGHKMQPERWPHFMEKKS--TYRSNKALGALFDEV 1022
Query: 872 KSY 874
+
Sbjct: 1023 AKH 1025
>gi|353235419|emb|CCA67432.1| related to RNA-directed RNA polymerase (RdRP) [Piriformospora
indica DSM 11827]
Length = 1186
Score = 83.2 bits (204), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 123/545 (22%), Positives = 224/545 (41%), Gaps = 103/545 (18%)
Query: 225 MYHCHIST--KGNCTFKGPYLNQTRTHLQR-ELGDDNILLVKFDEELGGH-RSSNNWNDS 280
++ CH +T + GP ++T +++ + + F EE G H R N +
Sbjct: 397 VFECHRATITPSSIILTGPLPDETNRVIRKYRKYAHKFIRIDFTEEDGLHLRKEKNVDLG 456
Query: 281 Y---SKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMG 337
+ E + G+LV R + F + +E +F+ + F
Sbjct: 457 AILDDRIGEFMKNGLLVAGRRFEFLAYSSSALKEHA---------VWFM----TPFTTSD 503
Query: 338 YQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPC 397
QY+ S R + + + + Y +RLS S T E + I + I P
Sbjct: 504 GQYVTSESI---RRSLGDFSKVIYCPSRYGARLSQAFSST---EPSIT-IKVNEIRFIPD 556
Query: 398 RDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANF 457
++ D +Y TDG G +S +A +E+ A +
Sbjct: 557 KESDQGSLY--------TDGVGTMSPQVA------------------------EEIWAKY 584
Query: 458 SD-VARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKA-DRDL 515
++ ++ + P Q+RL +KG L ++ +L + + +R SM K + DR++
Sbjct: 585 TEPRSKRSRRRLKTPSAFQIRL----GGLKGMLCVDSRLQGRVVCVRDSMNKFHSNDREV 640
Query: 516 SDGQTFNSLEVVKTSNQPRKTYLSRNLIALL-SYGGVPEIFFLDILRNALDDARGVFSNK 574
E+ + ++P +L+R LI LL + VP F+ + A+++ R +
Sbjct: 641 ---------EIARAFDRPMTMFLNRPLIMLLETLKKVPLEPFMALQTKAVEETRDAMKSF 691
Query: 575 RNALKVSFNYG-GMDYDFTSARMILSGISL-----DE-----PYLQHRLSILMKEEKKSL 623
A ++ YG G + TS + L + + D+ P+L L + + L
Sbjct: 692 DTAARLLEQYGLGTAFRLTSVFLQLHKLDVALALKDQSQGLLPFLGRMLQFVENHILRDL 751
Query: 624 Q-AGKLPVTESYYLMGTVDPTGILKSNEVCIILK--DGQVSWEK--VLVYRNPGLHFGDI 678
+ ++PV ++ L+G D L NE+ ++ DG+ + + V++ R+P +H GD
Sbjct: 752 KYKARIPVPNAWTLVGVSDEYDYLGENEIYARVRTIDGEEQYLEGPVMISRSPTVHPGDA 811
Query: 679 HVLKAT------YVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPEL 732
++ A LED + FPC G SL +AGGD DGD+Y + +P+L
Sbjct: 812 RMVWAIGKPSRGAPPGLEDLTN----CVVFPCKGHPSLPQCLAGGDLDGDLYCLVLDPQL 867
Query: 733 LKHFK 737
HF+
Sbjct: 868 --HFR 870
>gi|169625035|ref|XP_001805922.1| hypothetical protein SNOG_15784 [Phaeosphaeria nodorum SN15]
gi|160705585|gb|EAT76879.2| hypothetical protein SNOG_15784 [Phaeosphaeria nodorum SN15]
Length = 1234
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 75/291 (25%), Positives = 123/291 (42%), Gaps = 38/291 (13%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P ++Q+R KG L L+ L + + IR SM K A G + LE+ +
Sbjct: 625 PTVLQIRC----RGAKGVLSLDSSLVGEELHIRKSMTKFIA------GSEWRDLEICSAA 674
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILR--------------NALDDARGVFSNKRN 576
+P + YL+ I +L GVP F+ + NA D R +N R
Sbjct: 675 YRPLRVYLNHQFIKILEDLGVPPQNFIKVQNEARKQLELIVKHPLNAADFLRKHKTNIRT 734
Query: 577 ALKVSFNYGGMDYDFTSARMILSGISLD-EPYLQHRLSILMKEEKKSLQ-AGKLPVTESY 634
S ++ + F M +G+S + +L + + + L+ ++PV +
Sbjct: 735 GYSHSADHAKIPRLF--ELMHYAGLSFQTDQFLCEIVEVAAMSSIRDLKYRARIPVESGH 792
Query: 635 YLMGTVDPTGILKSNEVCIILKDGQVSW---------EKVLVYRNPGLHFGDIHVLKATY 685
L G +D T LK EV + +D S ++V+V R P LH GD+ ++ A
Sbjct: 793 LLYGIMDETNTLKEGEVYVATEDETPSGRREKNILIGDRVVVTRAPALHPGDVQLVSAVN 852
Query: 686 VKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHF 736
V + I F G R L +++GGD DGD++ V +P L+ +
Sbjct: 853 VPDGSPLRSLHN-CIVFSQQGARDLPSQLSGGDLDGDLFHVIWDPLLIPKY 902
>gi|297737620|emb|CBI26821.3| unnamed protein product [Vitis vinifera]
Length = 943
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 85/343 (24%), Positives = 143/343 (41%), Gaps = 50/343 (14%)
Query: 664 KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDM 723
KV+V +NP LH GD+ +L A V L V + FP G R DE +G D DGD+
Sbjct: 586 KVVVAKNPCLHPGDVRILSAVDVPALHHMVD----CVVFPQKGMRPHPDECSGSDLDGDI 641
Query: 724 YFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFS--LEELESELFKLFLNTRF-CPSN 780
YFV + +L+ R ++ A +++D +EE+E N + +N
Sbjct: 642 YFVCWDHDLI-----PPRQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIAN 696
Query: 781 AKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPED 840
A ++ AD E A+ L ++ AL+ PK +G+ E+P
Sbjct: 697 AHTVFAD----------------KEYDKALCPPCKELAKLFSIALEFPK-TGVPAEIPFH 739
Query: 841 LKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVD---RSVTEIWKLPCFD-----D 892
L V+++P +M + ++ES SV+G ++ VK + RS T + +D D
Sbjct: 740 LHVKEYPDFMEKANKPTYESQSVIGKLFREVKDVAPHNYDVRSFTRDVAMQSYDADMEVD 799
Query: 893 GVPEACMTKWKGYYDQYRWEMKEAIDKCTVERE-EAAELVIEKYKQILYGAAEFEQSTRT 951
G + + Y QY +++ +D C + E E I K + + E
Sbjct: 800 GFEDYVRDAFY-YKSQYDFKLGSLMDCCGIRTESEILSGSIMKMSKSFDKRKDAEAIALA 858
Query: 952 LEEIYNEALAIYNI-----------TYDLAASRRQVSYCSFAW 983
+ + EA +N Y +A++ V+Y + W
Sbjct: 859 VRSLRKEARTWFNKMGSGTYAGADDVYAIASAWYHVTYHPYYW 901
>gi|449550168|gb|EMD41133.1| hypothetical protein CERSUDRAFT_111700, partial [Ceriporiopsis
subvermispora B]
Length = 595
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 115/245 (46%), Gaps = 20/245 (8%)
Query: 497 PQTIQI--RPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEI 554
P +I++ RPSM+K S G T +LE+ S P L+ I +L G+
Sbjct: 220 PPSIKMAYRPSMLK------YSGGPT--ALELNDCSRCPTSARLNAQFIIMLLTLGINIE 271
Query: 555 FFLDILRNALDDARGVFSNKRNALK-VSFNYGGMDYDFTSA---RMILSGISLDEPYLQH 610
F +L+ LD + ++ AL+ + D+D ++L+ L EPY++
Sbjct: 272 TFEKMLKEHLDIIGCITHDRDVALRYLKGELDASDHDTFGQDVYALLLAYHDLSEPYVEW 331
Query: 611 RLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKSNEVCIILKD-GQVSWEKVLVY 668
+L + KSL + L V ES Y+ G VD GIL+ +EV I L V VLV
Sbjct: 332 KLKQFQALQYKSLYKKLNLRVEESCYVYGVVDEDGILEGDEVFINLPGRTGVVLGNVLVA 391
Query: 669 RNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSR 728
RNP GD L+A + L+ K+ I F S+ D +A GD DGD YFV+
Sbjct: 392 RNPSYSPGDFRKLRAVHDPRLKH----HKHCIVFSRKASHSIPDSMASGDLDGDEYFVTW 447
Query: 729 NPELL 733
+P L+
Sbjct: 448 DPTLI 452
>gi|453081039|gb|EMF09089.1| RdRP-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 1253
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 102/427 (23%), Positives = 173/427 (40%), Gaps = 83/427 (19%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P +Q+R KG + + +LP + + +R +M K L+ LE+ +
Sbjct: 627 PTALQIRF----QGAKGMVAQDTRLPGKRLMLRNNMRKY-----LTGADDHMDLEICGAA 677
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDAR--------------GVFSNKRN 576
+P L+R I +L VPE F+++ A++ R V ++K +
Sbjct: 678 FRPLPMILNRGFIKILEDLAVPEQSFINLQNKAMERLRMMTQSAINTGTLLDEVHTSKAS 737
Query: 577 ALKVSFNYGG---MDY---DFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPV 630
L Y G +DY DF A + L+ IS E + G++PV
Sbjct: 738 GLPSLIRYLGQIGLDYHHDDFLYAAVELAVIS---------------ELRDIKHRGRIPV 782
Query: 631 TESYYLMGTVDPTGILKSNEVCIILKDGQVSW------EKVLVYRNPGLHFGDIHVLKAT 684
+ L G D TG LK E+ +I + G +KV++ R+P LH GDI + KA
Sbjct: 783 PKGVTLFGVPDETGYLKEGEIFVITERGPTGGKEILVRDKVIITRSPALHPGDIQLAKAV 842
Query: 685 YV------KELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKE 738
V ++L + V SK+ G R L +++GGD DGD+Y V + L+
Sbjct: 843 DVPPGNSNRQLSNVVVFSKW-------GQRDLPSKLSGGDLDGDLYNVIWDETLIP---- 891
Query: 739 SERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLT 798
WM + ++ + ++ F+ F ++ L A ++ L
Sbjct: 892 ---WMIYAPAQYPRVPPVELPRDVTRKDMSDFFVT--FMENDKLGLIA-------NQHLQ 939
Query: 799 LGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKF-PCYMRRDESVS 857
L D+ + + ++L + A+D K+GI + + KF P YM + V
Sbjct: 940 LADQ--RPMGTLDPDCIKLAALASTAVDY-SKTGIPANMGTAPRPAKFKPDYMAPNPRVV 996
Query: 858 FESTSVL 864
F +L
Sbjct: 997 FSQEGLL 1003
>gi|390597813|gb|EIN07212.1| RdRP-domain-containing protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 1217
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 121/519 (23%), Positives = 205/519 (39%), Gaps = 115/519 (22%)
Query: 410 EALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGE 469
E +HTDG G IS LA ++ C DR +A S
Sbjct: 581 EPHLHTDGCGTISRKLA----DMIWAALCK---------DRPYFQACKSS---------- 617
Query: 470 PPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKT 529
P Q+R KG + +++ L + + +RPSM K +A + S +E+ K
Sbjct: 618 -PDCYQIRFL----GYKGIVTVDETLEGEQMCLRPSMNKFRAHKTPS-----AEIEIAKP 667
Query: 530 SNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDD------------------ARGVF 571
+P + L+R LI +L GV F+ + A+ D G+
Sbjct: 668 FWKPTQVNLNRALIMILEDRGVSWKCFMKLQDEAVRDINTASFSIDNFVRMLSDRGAGLG 727
Query: 572 SNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAG-KLPV 630
SN R L + N + +DF + L L P++ + + + ++ G +P+
Sbjct: 728 SNYR-LLYIMRNLAELGFDF---KQRLRVQPLSHPFILRLVEFIRHHLLREIKHGASIPL 783
Query: 631 TESYYLMGTVD--PTGILKSNEVCIILKDGQV------------SWEK--VLVYRNPGLH 674
++Y L G D P + ++ L + ++ W K +++R+P +H
Sbjct: 784 RDAYLLPGVADEGPAYEARGHQNVFKLAENRIFACVQGPDDVEPKWLKGNCVIWRSPVVH 843
Query: 675 FGDIHVLKATYVKELED---FVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPE 731
GDI + A K ED F K + P G RSLA + GGD DGD Y VS P
Sbjct: 844 PGDIQRVYAI-GKPPEDQLCFFSRLKNVVVLPSVGERSLASCLGGGDLDGDEYCVSMLPT 902
Query: 732 LLKHFKESERWMSTSKNLSANK-----RLIDFSLEELESELFKLFLNTRFCPSNAKSLAA 786
LL ++ + L+ ++ + DF +E + S++ L
Sbjct: 903 LLPTEQQPPAEYPPVETLTLDRPAEIDDICDFIVEYVHSDVLGL---------------- 946
Query: 787 DCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKF 846
+ D+ L + D+S + E LRL + A+D K+GI + + ++ + K
Sbjct: 947 -----LSDKHLVIADQSKD--GVRDEKCLRLAELCSQAVDY-AKNGIAINLAKEKRAMKQ 998
Query: 847 PCYMRRD----ESVS------FESTSVLGTIYNTVKSYE 875
+ D E +S +ES+ LG +Y ++ E
Sbjct: 999 LIPFKPDWHAAEIISPRSTDYYESSRALGHLYREIRLTE 1037
>gi|115448543|ref|NP_001048051.1| Os02g0736200 [Oryza sativa Japonica Group]
gi|113537582|dbj|BAF09965.1| Os02g0736200, partial [Oryza sativa Japonica Group]
Length = 476
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 122/521 (23%), Positives = 205/521 (39%), Gaps = 112/521 (21%)
Query: 238 FKGPYLNQTRTHLQRELGD-DNILLVKF-DEELGGHRSSN-----------NWNDSYSKY 284
F GP +N + ++ D +N L + F DE+ R+++ N Y +
Sbjct: 38 FYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASGHDANRTALYKRV 97
Query: 285 NEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSG 344
+ +GI +G + + F F S+S ++ ++SA++ Q G
Sbjct: 98 LSVLSDGITIGGKNFEFLAF------------SSSQLR------DNSAWMFASRQ----G 135
Query: 345 KTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNV 404
+ R R + +VA Y +RL S + + + + +E I D
Sbjct: 136 LAASDIRTWMGDFRNIRNVAKYAARLGQSFSSSTE-TLKVQKYEVEEISD---------- 184
Query: 405 VYKDGEALIHTDGTGFIS----EDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDV 460
K+G + +DG G IS ++A+KC N
Sbjct: 185 -IKNGTQHVFSDGIGKISSAFANEVAMKC--------------------------NLKRF 217
Query: 461 ARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQT 520
A P Q+R Y G KG + ++ + +R SM+K ++D D
Sbjct: 218 A---------PSAFQIR--YGG--YKGVVAVDPT-SRWKLSLRKSMLKFQSDNITVDVLA 263
Query: 521 FNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKV 580
++ QP +L+R LI LLS GV + F A++ + ++ + A++
Sbjct: 264 YSKY-------QP--GFLNRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEA 314
Query: 581 SFNYGGMDYDFTSARMILSGISLD-EPYLQHRLSILMKEEKKSLQA-GKLPVTESYYLMG 638
+ ++L G D EPYL L + L+ ++ + + +MG
Sbjct: 315 IELMPMGEITNAVKELLLCGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMG 374
Query: 639 TVDPTGILKSNEVCIILKDGQVSWE------KVLVYRNPGLHFGDIHVLKATYVKELEDF 692
+D T LK +V I G + KV++ +NP LH GDI +L A V L
Sbjct: 375 CLDETRTLKYGQVFIRATSGVNDNDRFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHM 434
Query: 693 VGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
+ FP GPR +E +G D DGD+YFVS +P L+
Sbjct: 435 FN----CVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPSLI 471
>gi|407926953|gb|EKG19860.1| PhoH-like protein [Macrophomina phaseolina MS6]
Length = 1608
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 105/388 (27%), Positives = 169/388 (43%), Gaps = 63/388 (16%)
Query: 358 RTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEA--LIHT 415
R + S+ ++ S+++ + K ++ + FS + +E P R D D EA I T
Sbjct: 55 RKIESLGDF-SKMTTVGKKAKRIGLLFSSAEMG-VELAPERCAD----IPDVEANDYIFT 108
Query: 416 DGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQ 475
DG G IS LA RS+ + + F +V P + Q
Sbjct: 109 DGCGLISPHLA-------------------RSL-VQSVHIAFRNVKYI-------PSVFQ 141
Query: 476 VRLFYNGTAVKGTLLLNKKLPPQTI-QIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPR 534
+R Y G KG L L+ + Q + + R SM K + DL+ L VV S
Sbjct: 142 IR--YRG--YKGVLSLDPSMGSQCLAKFRSSMKKFRGGDDLT-------LSVVDYSKPYT 190
Query: 535 KTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSA 594
YL+ ++ LL VP+ FL R + + S R +++ F + A
Sbjct: 191 FGYLNDEVVLLLHALRVPDEVFL---RKQAEHLHFLESVTRLDVRMCFRFLSYCNRLDLA 247
Query: 595 -RMILSGISLDEPYLQHRLSILMKE--EKKSLQAGKLPVTESYYLMGTVDPTGILKSNEV 651
R+++SG+ E ++ + + K++ Q ++ + +S L G D G+LK E
Sbjct: 248 ERLLISGVEAVERDVRKMVGQEYERMLTKRNEQRCRILIPQSRLLFGVCDTKGLLKEGEC 307
Query: 652 CIILK---DGQ---VSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCN 705
+ + DGQ + +VLV RNP LH GD+ +A + EL V + FP
Sbjct: 308 VVRVTMDGDGQAQTIVGTQVLVTRNPCLHPGDLQKFRAVFHPELSHLVD----CVVFPTA 363
Query: 706 GPRSLADEIAGGDFDGDMYFVSRNPELL 733
G R AD ++GGD DGD +FV + +L+
Sbjct: 364 GKRPSADLMSGGDLDGDKFFVCWDKDLI 391
>gi|400595821|gb|EJP63611.1| RNA dependent RNA polymerase [Beauveria bassiana ARSEF 2860]
Length = 1328
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 128/495 (25%), Positives = 201/495 (40%), Gaps = 99/495 (20%)
Query: 257 DNILLVKFDEELGG-----HRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEE 311
D L V F +E G HR SN++ Y Y + ++GI V R + F F
Sbjct: 513 DYFLRVTFTDEDGSDLNFNHRVSNDY--VYDHYRSVMKQGIEVAGRRFSFLGFSHS---- 566
Query: 312 KKKDPSTSPVKCYFVRMESSAFID--MGYQYILSGKTVHEARYMFMHVRTVSSVANYMSR 369
S +F+ + F+D MG Q TV + F +R + A +R
Sbjct: 567 -----SLRSHSAWFM----APFVDNRMGRQ---DYATVLNSLGDFREIRIPAKCA---AR 611
Query: 370 LSLILSKT-MKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALK 428
+ S+T + + S I I IED Y D E+ + +DG G IS+ AL+
Sbjct: 612 IGQAFSETPYAVSLRGSSIVISYIEDVRS--------YVD-ESRVFSDGVGTISQG-ALE 661
Query: 429 CPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGT 488
F DV + G P +Q+R+ +KG
Sbjct: 662 ---------------------------EFWDV--LPLNLGSP-TCVQIRV----AGIKGM 687
Query: 489 LLLNKKLPPQTIQIRP-SMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLS 547
L L+ +L + I IR SM+K + RD F + + + + +P + L+R +I +L
Sbjct: 688 LSLDPRLLGKQICIRAESMMKFPS-RD------FVEIGICEVAARPLRLVLNRQMIKILE 740
Query: 548 YGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMI--LSGISLD- 604
G +F + AL+ RGV + N Y G+ R I + +D
Sbjct: 741 DMGTNRTWFRAMQAKALETLRGVTATAANTCTF-LEYQGVGSSIRLPRFIRRMHAHGIDY 799
Query: 605 --EPYLQHRLS-ILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIIL------ 655
+P+L+ + ++++E + ++P+ + L G +D TG LK E+ I
Sbjct: 800 RGDPFLKGVVEYVVLRELRLLKHKARIPIEKGVTLFGVMDETGFLKEGEIYIHYDRRAPG 859
Query: 656 -KDG---QVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLA 711
KDG + V+V R+P LH GDI + K E + I F G R L
Sbjct: 860 RKDGIEDSLVDGPVVVTRSPALHPGDIQLAKMVTPPEKHPLRAL-RNCIVFSQRGGRDLP 918
Query: 712 DEIAGGDFDGDMYFV 726
+++GGD DGD Y V
Sbjct: 919 SQLSGGDLDGDKYNV 933
>gi|159123458|gb|EDP48577.1| RNA-directed RNA polymerase, putative [Aspergillus fumigatus A1163]
Length = 809
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 85/307 (27%), Positives = 130/307 (42%), Gaps = 47/307 (15%)
Query: 453 LEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQT-IQIRPSMIKVKA 511
L S ++R ++ P + Q+R KG ++L ++PPQ Q R SM K
Sbjct: 214 LSQKLSIISRNTRYH---PAVYQIRF----KGYKGVVMLEPQMPPQYWFQFRRSMRKFSG 266
Query: 512 DRDLSDGQTFNSLEVVKTSN------------QPRK-TYLSRNLIALLSYGGVPEIFFLD 558
D ++F +E KT QP YL+ +I LL GV FL
Sbjct: 267 IGD----RSFAVVEYSKTQPATPLFYSLPLMVQPYTYGYLNDEVILLLHTLGVSAEVFLR 322
Query: 559 ILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKE 618
+ + + A + D + +++L GI L+ S++ E
Sbjct: 323 KQKEHFQRLQESVTEPTVAFTFLCSLNRFD---LAEKLVLHGIERVSGALR---SLVADE 376
Query: 619 EKKSL-----QAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQ-------VSWEKVL 666
KK L Q ++ V ES + G DP G+L+ E + + D + +V+
Sbjct: 377 HKKMLNKREDQKCRILVPESRLVFGVCDPRGVLQEGECFLRVTDDMNGGRPRTIVGCEVV 436
Query: 667 VYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFV 726
V RNP LH GD+ LKA EL + I F G R AD+++GGD DGD +FV
Sbjct: 437 VTRNPCLHPGDLRKLKAVDRPELSHL----RDCIVFAVKGERPAADQMSGGDLDGDTFFV 492
Query: 727 SRNPELL 733
+P+L+
Sbjct: 493 CWDPDLV 499
>gi|253743974|gb|EET00246.1| RNA-directed RNA polymerase, putative [Giardia intestinalis ATCC
50581]
Length = 1989
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 113/450 (25%), Positives = 179/450 (39%), Gaps = 104/450 (23%)
Query: 413 IHTDGTGFISEDLALK---CPTYVYKEKCT-----------NDDSTERSIDRKELEANFS 458
+ TDG G IS DL L+ C + E+ NDD+ ++ +
Sbjct: 475 VFTDGAGEISYDLMLEIAVCLDQIKTEQLNTNRDIGNFSDYNDDNEGEDGGTEDATLDLQ 534
Query: 459 DVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDG 518
+ S+ + P +Q+R KG L+LN LPP+TI + S +K
Sbjct: 535 TDLKVLSNSIQVPSALQMRW----AGAKGVLILNALLPPRTILLHKSQVKFTIPNPTETQ 590
Query: 519 QTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNAL 578
QT LEV++ + P + ++ +I LLS GVP+ FL+++ L A VFS +
Sbjct: 591 QT---LEVLRVA-YPSRGMINMQIIVLLSEMGVPDEVFLNLVHQDLQKAL-VFSEPMDRC 645
Query: 579 KVSFNYGGMDYDFTS-----------ARMILSGISLDEPYLQHRLSILMKEEKKSLQAG- 626
+ + Y S +M+++G+ + EP LQ L L + +S++A
Sbjct: 646 RHQADL----YQLVSRASRSSSGKLILQMLMAGVDITEPCLQFVLMKLQMMQLRSMKANM 701
Query: 627 KLPVTESYYLMGTVDPTGILKSNEVCIILK----------------------DGQVSWE- 663
+ V +S L+G D +LK EV I L+ D +S
Sbjct: 702 RFSVPDSRILIGIYDCFNLLKEGEVYIGLQSPLVISKWVASTHLKAISDAQHDTSISLSS 761
Query: 664 ------------------KVLVYRNPGLHFGDIHVLKA--------------TYVKELED 691
+V+V +NP + GD+ V +A T V L
Sbjct: 762 HPHIFDMASEFGPSCVEGRVVVAKNPCFYRGDVRVYQAVNLLERLKREASEKTLVPSLPP 821
Query: 692 FV------GTSKYAIFFP--CNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWM 743
FV K I FP G R +AD ++G D DGD+Y+VS + ++ +
Sbjct: 822 FVTQEAIKAMYKGVICFPQYYEG-RPMADCLSGSDLDGDIYWVSWDASIIGTIQYEYEPA 880
Query: 744 STSKNLSANKRLIDFSLEELESELFKLFLN 773
S N S +LE++E+ L L N
Sbjct: 881 SFQAN-SGEINTCAPNLEDVEAGLGNLLRN 909
>gi|452977804|gb|EME77568.1| hypothetical protein MYCFIDRAFT_60792 [Pseudocercospora fijiensis
CIRAD86]
Length = 1015
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 123/560 (21%), Positives = 227/560 (40%), Gaps = 102/560 (18%)
Query: 188 DLQMARFESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTR 247
+ +A E + E + + D L ++ H I T +GP T
Sbjct: 172 EFTIATLEQRLHEFVALYDDHAPDNPFELAKRHVHINLIHKVIVTPAGIRLEGPEPEPTN 231
Query: 248 THLQRELGD-DNILLVKFDEELGGHRSSNNWNDSYSKYNEIARE----GILVGLRCYHFF 302
L++ + D+ + V F +E GG + D Y+E R I++ R + F
Sbjct: 232 RVLRKYAENIDDFVRVVFQDEHGGPVRYDPRTDLARIYHERFRNVLDTSIVICGRGFSFL 291
Query: 303 VFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSS 362
F + C+F+ + F++ + I + K V + F +RT +
Sbjct: 292 GFSHSSLRSQS---------CWFM----APFVNRNGRLIFAEK-VLKGLGDFSSIRTPAK 337
Query: 363 VANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFIS 422
A + + +F+ N + EP + D V+ ++G +DG G IS
Sbjct: 338 CAARIGQ-------------NFTDTNAT-VHLEPDQVFDLQVIERNGRDF--SDGVGTIS 381
Query: 423 EDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNG 482
E L + V++ T +K L+ P ++Q+R
Sbjct: 382 EALLRE----VWRRYGT----------KKMLK----------------PTVLQIRF---- 407
Query: 483 TAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNL 542
KG + L+ +LP + + +R +M K D +T LE+ +P L++
Sbjct: 408 QGAKGMVSLDPRLPGKALMLRANMRKY-------DTETSWVLEICGAGFKPLPMVLNQQF 460
Query: 543 IALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMI--LSG 600
I + G+P FLD+ R+A+ R + + N+ K+ G+ R+I L+
Sbjct: 461 IKIFEDLGIPMSVFLDLQRSAMKHLRQMTALSVNSAKL-LEDSGIARATGMPRLIRDLAQ 519
Query: 601 ISLD---EPYLQHRLSILMKEEKKSLQ-AGKLPVTESYYLMGTVDPTGILKSNEVCIILK 656
I D + +L + + + + + ++ ++PV L G +D TG LK ++ +I +
Sbjct: 520 IGFDYHEDHFLYSIVEMAVVTQLRDIKYRARIPVEAGVTLYGIMDETGYLKEGQIFVITE 579
Query: 657 DGQ------VSWEKVLVYRNPGLHFGDIHVLKA------TYVKELEDFVGTSKYAIFFPC 704
+ +KV++ R+P +H GDI V+ A + ++ L + V SK+
Sbjct: 580 KAPEGGKHILIKDKVVITRSPAMHPGDIQVVDAVDVPPNSLLRRLSNVVVFSKW------ 633
Query: 705 NGPRSLADEIAGGDFDGDMY 724
G R L +++GGD DGD+Y
Sbjct: 634 -GDRDLPSKLSGGDLDGDIY 652
>gi|297737619|emb|CBI26820.3| unnamed protein product [Vitis vinifera]
Length = 919
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 102/212 (48%), Gaps = 29/212 (13%)
Query: 664 KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDM 723
K++V +NP LH GD+ VL A V L V + FP G R +E +G D DGD+
Sbjct: 552 KIVVAKNPCLHPGDVRVLWAVNVPTLHHMVD----CVVFPQKGKRPHPNECSGSDLDGDI 607
Query: 724 YFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFS--LEELESELFKLFLNTRF-CPSN 780
YFV + +L+ + ++ A +++D +EE+E +N +N
Sbjct: 608 YFVCWDRDLI-----PPQQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIVNDSLGIIAN 662
Query: 781 AKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPED 840
A ++ AD E A + L ++ A+D PK +G+ E+P +
Sbjct: 663 AHTVFAD----------------KEYDKAYCDPCTELAKLFSIAVDFPK-TGVPAEIPRN 705
Query: 841 LKVEKFPCYMRRDESVSFESTSVLGTIYNTVK 872
L+V+++P +M + + ++ES SV+G ++ VK
Sbjct: 706 LRVKEYPDFMEKADKPTYESQSVIGKLFREVK 737
>gi|326481841|gb|EGE05851.1| hypothetical protein TEQG_04860 [Trichophyton equinum CBS 127.97]
Length = 1579
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 95/390 (24%), Positives = 159/390 (40%), Gaps = 53/390 (13%)
Query: 518 GQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNA 577
G N LE+++ S Q +L+R LI +LS GV + F+ LR L+D +++ A
Sbjct: 811 GSIHNGLEIIRWS-QFAAAHLNRQLIVVLSALGVSDEIFIQKLRLMLEDMEQAMTSETKA 869
Query: 578 LK-VSFNYGGMDYDFTSARMILSGISLD-EPYLQHRLSILMKEEKKSL-QAGKLPVTESY 634
+ + A+M+ G +P+++ L + + K L + K+ + +
Sbjct: 870 MSMLQKRVDPNQMTLILAQMVHDGFQGSCDPFVKSLLELWRAWQIKYLKEKAKVFIDQGA 929
Query: 635 YLMGTVDPTGILKS--------------------NEVCIILKDGQ------VSWEKVLVY 668
L G +D T LK E+ + + D + V ++
Sbjct: 930 CLFGCLDETATLKGYHEKKRPSIEATYEERLEYLPEIFVQVFDNEEEKKYRVIEGPCILA 989
Query: 669 RNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSR 728
RNP LH GDI V++A V L K I FP G R + +GGD DGD Y V
Sbjct: 990 RNPSLHPGDIRVVRAVNVPALHHL----KDVIVFPQTGDRDVPSTCSGGDLDGDDYIVIW 1045
Query: 729 NPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADC 788
+ +L+ K+ R +A D ++ ++ S F ++ P A +
Sbjct: 1046 DQDLVPLPKDWFREPMDYTASNAQSLTRDVTVNDITS-FFVTYMKNDRLPQIAHA----- 1099
Query: 789 WQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPC 848
L D E E ++L ++ A+D KSGI + DL K+P
Sbjct: 1100 -------HLAFAD--YLEDGVNDERCIQLAQLHSAAVDY-NKSGIPANMTRDLVPRKWPH 1149
Query: 849 YMRRD---ESVSFESTSVLGTIYNTVKSYE 875
+M + + ++S +LG IY+ V+ E
Sbjct: 1150 FMEKKYKPKEAQYQSKKILGQIYDIVERVE 1179
>gi|293333230|ref|NP_001170500.1| uncharacterized protein LOC100384503 [Zea mays]
gi|238005686|gb|ACR33878.1| unknown [Zea mays]
Length = 412
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 62/104 (59%), Gaps = 8/104 (7%)
Query: 142 MRHRASIPQYVALGELEFRKAFLILSYIGENSLEE--VITADEIRGMRDLQMARFESEVW 199
+R+ AS PQ AL +LEF K FLILSY+ N+LE+ V+T D I+ ++ L M FES++W
Sbjct: 293 LRNTAS-PQMCALEDLEFSKRFLILSYLCRNNLEDEVVLTVDYIKSLKFLSMVHFESQIW 351
Query: 200 EKLGRKNI-----SQEDRRMSLKWDSGKTHMYHCHISTKGNCTF 238
K G+KN + DR + D T +YHC+I +G F
Sbjct: 352 RKFGQKNFQASNRAATDRAKNFDSDPTTTKLYHCNIEIRGESIF 395
>gi|308161550|gb|EFO63991.1| RNA-directed RNA polymerase, putative [Giardia lamblia P15]
Length = 1999
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 103/406 (25%), Positives = 161/406 (39%), Gaps = 99/406 (24%)
Query: 413 IHTDGTGFISEDLALKCPTYVYKEKCTN----------DDSTERSIDRKELEANFSDVAR 462
+ TDG G IS DL L+ + K K D+ + S D ++ ++ +
Sbjct: 475 VFTDGAGEISYDLMLEIALCLNKLKVEQLNKNTETHYLDEFADTSEDTEQNMSHLQPNLK 534
Query: 463 TESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFN 522
T S+ + P +Q+R KG L+LN LPP+TI + S IK QT
Sbjct: 535 TISNLIQVPSAVQMRW----AGAKGVLILNALLPPKTILLHNSQIKFSIPNPTETQQTIE 590
Query: 523 SLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSF 582
L V QP K ++ +I LLS GVP+ FL+++ L A +F + +
Sbjct: 591 ILRVA----QPSKGMINMQIIVLLSEMGVPDDVFLNLVYQDLQKAL-LFLEPIDRCR--- 642
Query: 583 NYGGMDYDFTS-----------ARMILSGISLDEPYLQHRLSILMKEEKKSLQAG-KLPV 630
Y Y S +M+++G+ + EP LQ L L + +S++A + V
Sbjct: 643 -YQADLYQLVSRTSHSPSGKIILQMLMAGVDIIEPCLQFILMKLQLMQLRSMKANMRFSV 701
Query: 631 TESYYLMGTVDPTGILKSNEVCIILKD--GQVSWE------------------------- 663
+S +G D +LK EV I L++ W
Sbjct: 702 PDSRIFVGIYDCFDLLKEGEVYIGLQEPLSISKWTATTHLKAIFNDTQRESLLPPDLNLH 761
Query: 664 --------------KVLVYRNPGLHFGDIHVLKATYVKE--------------LEDFV-- 693
+V+V +NP + GD+ + +A + E L FV
Sbjct: 762 ISDVVGLDISCVEGRVIVAKNPCFYRGDVRIYQAVNIFERLKQETSRQKLKAVLPSFVTR 821
Query: 694 ----GTSKYAIFFP--CNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
G + I FP G R + D ++G D DGD+Y+VS + LL
Sbjct: 822 EAIRGMYRGVICFPKYYEG-RPMTDCLSGSDLDGDIYWVSWDASLL 866
>gi|342878783|gb|EGU80072.1| hypothetical protein FOXB_09347 [Fusarium oxysporum Fo5176]
Length = 1277
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 132/286 (46%), Gaps = 41/286 (14%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRP-SMIKVKADRDLSDGQTFNSLEVVKT 529
P +Q+R + G KG L L+ +L + IR SM+K +D DL + L +
Sbjct: 631 PTCLQIR--WGG--CKGMLSLDTRLKGRVFCIRQESMMKFPSD-DLRE------LGICDA 679
Query: 530 SNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDY 589
S++P + L+R +I +L G +F + NALD R ++ N +Y +
Sbjct: 680 SSKPLRLVLNRQMIKILEDMGTTNDWFFRLQNNALDILRNATADATNT-SYFLDYQAIGV 738
Query: 590 DFTSARMI--LSGISLD---EPYLQHRLS-ILMKEEKKSLQAGKLPVTESYYLMGTVDPT 643
+ +++ L + +D + +L+ + ++ +E + ++PV + L G +D T
Sbjct: 739 NMGLPKLVKQLEKMGIDYRRDKFLKSAVEHVVFRELRLLKHKARIPVDKGVTLFGVMDET 798
Query: 644 GILKSNEVCII----------------LKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVK 687
G L ++EV + LKDGQ+ +V R+P LH GDI ++
Sbjct: 799 GFLDADEVFVTYDKTHGVYRGRRINSTLKDGQI-----IVTRSPALHPGDIQIVNQVTPP 853
Query: 688 ELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
+ + + + I F G R L ++GGD DGD+Y + +P+ L
Sbjct: 854 QGHS-LRSLQNCIVFSQKGKRDLPSMLSGGDLDGDLYNIIWDPDAL 898
>gi|241997884|ref|XP_002433585.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
gi|215495344|gb|EEC04985.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
Length = 528
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 121/275 (44%), Gaps = 37/275 (13%)
Query: 468 GEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVV 527
GE P +Q+R Y G KG LL++ + + I R SM K +D + L V+
Sbjct: 92 GEEPCAVQIR--YGGC--KGMLLVDPTMAGRRIVFRTSMCKFPSDHE--------DLYVL 139
Query: 528 KTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGM 587
KTS +PR YL+R +I +L G+ FL + LD + A +V Y +
Sbjct: 140 KTS-KPRVLYLNRPMITILEQSGIRAKAFLALQNRVLDSFINSMLDAHEAAQVLCGYCAL 198
Query: 588 DYDFTSARMILSGISLD---EPYLQHRL-SILMKEEKKSLQAGKL--PVTESYYLMGTVD 641
+ L+G+ +D EP+ + + ++ K + L ++ P + + G +D
Sbjct: 199 RLPYKE----LAGVGVDLTVEPFFRGLIRAVNRKVLSEWLTKARILVPPEKGRTMFGVLD 254
Query: 642 PTGILKSNEVCIILKDGQVSWEK----------VLVYRNPGLHFGDIHVLKATYVKELED 691
T L+ +V + + ++ V+V +NP +H GDI L A V L
Sbjct: 255 ETDTLEYGQVFVQYSNDMFRYKATDPATILKGDVIVTKNPCMHPGDIRRLTAVDVPRLHH 314
Query: 692 FVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFV 726
+ I FP G R DE++G D DGD Y V
Sbjct: 315 V----RDCIVFPAKGERPHPDEMSGSDLDGDEYSV 345
>gi|159120120|ref|XP_001710276.1| RNA-directed RNA polymerase, putative [Giardia lamblia ATCC 50803]
gi|21666386|gb|AAM73688.1|AF393743_1 RNA dependent RNA polymerase [Giardia intestinalis]
gi|157438394|gb|EDO82602.1| RNA-directed RNA polymerase, putative [Giardia lamblia ATCC 50803]
Length = 2001
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 108/422 (25%), Positives = 170/422 (40%), Gaps = 99/422 (23%)
Query: 398 RDKDGNVVY-KDGEALIHTDGTGFISEDLALK---CPTYVYKEKCTNDDST-------ER 446
R++D +V K+ + TDG G IS DL L+ C + E+ D T +
Sbjct: 458 REEDVQIVSDKEYNGYVFTDGAGEISYDLMLEIALCLDKLKIEQLHKDTETYYDNGFADT 517
Query: 447 SIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSM 506
+ D + + +T S+ + P +Q+R + GT KG L+LN LPP+TI S
Sbjct: 518 NEDSEHTVPHLQPNLKTASNLIQVPSAVQMR--WAGT--KGVLILNALLPPRTILFHKSQ 573
Query: 507 IKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNAL-- 564
+K QT L V QP K ++ +I LLS GVP+ FL+++ L
Sbjct: 574 VKFSIPNPTETQQTLEILRVA----QPSKGMINMQIIVLLSEMGVPDDVFLNLVYQDLQK 629
Query: 565 --------DDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILM 616
D R + + S + G +M+++G+ + EP LQ L L
Sbjct: 630 TLLFLEPVDRCRHQADLYQLVSRASHSSSGK----LILQMLMAGVDITEPCLQFLLMKLQ 685
Query: 617 KEEKKSLQAG-KLPVTESYYLMGTVDPTGILKSNEVCIILK------------------- 656
+ +S++A + V +S +G D +LK EV + L+
Sbjct: 686 MMQLRSMKANMRFYVPDSRIFVGVYDCFDLLKEGEVYVGLQEPLSISKWAAATHLKAMSN 745
Query: 657 ------------DGQVS-----------WEKVLVYRNPGLHFGDIHVLKATYVKE----- 688
D Q+S +V+V +NP + GD+ + A + E
Sbjct: 746 DTQQEALLPPDLDLQISDIAVGLNISCVEGRVVVAKNPCFYRGDVRIYHAVNIFERLRRE 805
Query: 689 ---------LEDFV------GTSKYAIFFP--CNGPRSLADEIAGGDFDGDMYFVSRNPE 731
L FV G + I FP G R + D ++G D DGD+Y+VS +
Sbjct: 806 ASRQNLKPVLPSFVAQEAIRGMYRGVICFPKYYEG-RPMTDCLSGSDLDGDIYWVSWDAS 864
Query: 732 LL 733
LL
Sbjct: 865 LL 866
>gi|330921324|ref|XP_003299375.1| hypothetical protein PTT_10351 [Pyrenophora teres f. teres 0-1]
gi|311326958|gb|EFQ92511.1| hypothetical protein PTT_10351 [Pyrenophora teres f. teres 0-1]
Length = 1237
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 126/282 (44%), Gaps = 27/282 (9%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P ++Q+R KG L L++ L + + IR SM K A +T+ LE+ +
Sbjct: 632 PTILQIRF----RGAKGVLSLDESLAGEQLHIRQSMTKYIAK------ETWRDLELCGAA 681
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALK-VSFNYGGMDY 589
+P + +L+ I +L GVP F + A++ + + + NA + +++ G+
Sbjct: 682 YKPLQVFLNHQFIKILEDLGVPARNFKAVQDEAVNALKMITEHPLNAASFLEYSHSGVYA 741
Query: 590 DFTSARMILSGISLD---EPYLQHRLSILMKEEKKSLQ-AGKLPVTESYYLMGTVDPTGI 645
++ I L + +L + + +SL+ ++P+ + + L G +D T
Sbjct: 742 KVPRLFELMHQIGLSFHADRFLTDIVEVAAMTNLRSLKYRARIPIEQGHLLYGIMDETNF 801
Query: 646 LKSNEVCIILKDGQVSW-----------EKVLVYRNPGLHFGDIHVLKATYVKELEDFVG 694
L+ +V I +D + S E++++ R P LH GD+ ++ A V
Sbjct: 802 LQEGQVYIATQDYEKSGSGKLQRRILVGERIVITRAPALHPGDVQLVTAVDVPANSSLRA 861
Query: 695 TSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHF 736
+ F G R L +++GGD DGD++ + + L+ F
Sbjct: 862 LHN-CVVFSQRGARDLPSQLSGGDLDGDLFHIIYDQRLVPDF 902
>gi|367053924|ref|XP_003657340.1| hypothetical protein THITE_2147717 [Thielavia terrestris NRRL 8126]
gi|347004606|gb|AEO71004.1| hypothetical protein THITE_2147717 [Thielavia terrestris NRRL 8126]
Length = 1241
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 99/421 (23%), Positives = 170/421 (40%), Gaps = 74/421 (17%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P Q+R KG L L+ +L I IRPSM+K +++ D Q LE+ +
Sbjct: 624 PTCFQIRW----AGAKGMLSLDPRLEGNKICIRPSMVKFESN----DRQ----LEICDMA 671
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYD 590
++P L+ LI +L G P+ +FL++ L R V + N
Sbjct: 672 SRPIPMVLNHQLIKILEDMGAPDKWFLELQNRELQRLRAVTATVCNTAS----------- 720
Query: 591 FTSARMILSGISLDEPYLQHRL----------------SILMKEEKKSLQAGKLPVTESY 634
F A+ I I L + LQ +I++ E + ++PV +
Sbjct: 721 FVRAKKIGQSIQLHKLLLQTEAMGLDYWQDDFLRTAVEAIVLNELRLLKHKARIPVPKGI 780
Query: 635 YLMGTVDPTGILKSNEVCIILKDGQVSWEK------VLVYRNPGLHFGDIHVLKATYVKE 688
L G +D TG L EV + D + + + V+V R+P LH GDI V +
Sbjct: 781 TLFGIMDETGFLDEGEVYVTY-DAEDRYCQPPGPGPVIVARSPALHPGDIQVAYNRIPPD 839
Query: 689 LEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFK--ESERWMSTS 746
+ + + F G R L +++GGD DGD + V +P+++ E ++ S
Sbjct: 840 GHPLI-QQRNCLIFSSWGDRDLPSQLSGGDLDGDQFHVIWDPQVVASVITFEPAKYDRVS 898
Query: 747 KNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEE 806
L ++ ++ + + F F+ T D + R L D+ E
Sbjct: 899 P-LELDRPVVSADI----AAFFVDFMRT------------DHLGVIATRHKILADQ--RE 939
Query: 807 KAAMKENMLRLINIYYDALDAPKKSGIKV---EVPEDLKVEKFPCYMRRDESVSFESTSV 863
+ ++ +RL ++ A+D K+G V E+P+ LK P ++ R + S
Sbjct: 940 GGTLDQDCVRLAELHSRAVDF-SKTGRAVERWELPQSLKWR--PDFLSRGPEIKIHDISA 996
Query: 864 L 864
+
Sbjct: 997 I 997
>gi|290976086|ref|XP_002670772.1| predicted protein [Naegleria gruberi]
gi|284084334|gb|EFC38028.1| predicted protein [Naegleria gruberi]
Length = 1384
Score = 80.5 bits (197), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 117/482 (24%), Positives = 199/482 (41%), Gaps = 73/482 (15%)
Query: 413 IHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPL 472
+ TDG GFIS +LA+K V K K +++S+D + V + Y P
Sbjct: 378 LFTDGCGFISLELAMKVYEIVRKSKNLLKYQSKQSMDEDGIYEENDGVEFLVNEY--LPC 435
Query: 473 LMQVRLFYNGTAVKGTLLLN---KKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKT 529
Q+R KG + ++ +K+ + +R SM+K++ +D N+L +V
Sbjct: 436 AYQIRF----RGAKGMVYIHPNAEKVYGHHLVLRKSMMKIEHPN--TDDDIINNLCIVGY 489
Query: 530 SNQPRKTYLSRNLIALLS-------YGGVPEIFFLDILRNALDDARGVFSNKRNALKVSF 582
S+ ++ ++ +L G + EI ++ +++ + ++ + KV
Sbjct: 490 SSPCDFARINSTIMHILEGCEDETKQGKIFEILNQKACKH-IENLMKNYISESDIDKVFD 548
Query: 583 NYGGM-DYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVD 641
Y DY + IL +L+ L + + + ++P S L G D
Sbjct: 549 QYVKQGDYASLNVLSILKS---------KKLAFLTGPYRNQILSLRIPCYSSRRLYGIAD 599
Query: 642 PTGILKSNEVCIIL------KDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGT 695
P G+LK ++ I + K V V+V + P LH GD+ L+A + EL +F+
Sbjct: 600 PFGVLKEGQIFIQVSSLNDPKKKNVIENTVIVTKEPCLHRGDLRKLEAVNIPEL-NFLYD 658
Query: 696 SKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRL 755
I FP G R + + IAG D DGD YF + EL++ E + S + N+
Sbjct: 659 ---VIVFPTKGSRPITNMIAGSDLDGDQYFACWDNELVESLVEFD---PGSFDDDYNET- 711
Query: 756 IDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENML 815
+ ++FK + R L AD + R NM
Sbjct: 712 -----RSFDPDIFKDLIGIR-------HLFADFYGNQWSR-------------KYWNNME 746
Query: 816 RLINIYYDALDAPKKSGIKVEV-PEDL----KVEKFPCYMRRDESVSFESTSVLGTIYNT 870
RL + A+DAPKK V V +DL K FP Y + S S++G +Y++
Sbjct: 747 RLCTLINRAIDAPKKGNYSVAVNAQDLELLEKFPGFPHYHKNKHGPLRRSVSLVGKLYDS 806
Query: 871 VK 872
++
Sbjct: 807 MQ 808
>gi|260793153|ref|XP_002591577.1| hypothetical protein BRAFLDRAFT_105111 [Branchiostoma floridae]
gi|229276785|gb|EEN47588.1| hypothetical protein BRAFLDRAFT_105111 [Branchiostoma floridae]
Length = 3516
Score = 80.5 bits (197), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 118/507 (23%), Positives = 203/507 (40%), Gaps = 94/507 (18%)
Query: 354 FMHVRTVSSVANYMSRLSLILSKTMK-LEVDFSRINIERIEDEPCRDKDGNVVYKDGEAL 412
F + + + +R+ L+LS K LE+D I+ + + +DG
Sbjct: 161 FGEFEAIKNPSKRAARIGLLLSTATKCLELDEKEID------------HTSDIERDG--F 206
Query: 413 IHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEP-P 471
TDG GFIS + C + ++K D++ H P P
Sbjct: 207 TFTDGCGFIS----VACARKIMQDK---------------------DISERYRHQDPPVP 241
Query: 472 LLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSN 531
++Q R+ KG ++ + LP + IRPS K K L F + +
Sbjct: 242 SVIQFRM----KGCKGVVMTDPSLP-NGVCIRPSQEKFKWK--LPPPHVFGVCD--DGIS 292
Query: 532 QPRK-TYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALK--VSFNYGGMD 588
QP L++ I +LS G+ + FL + + ++K A + + Y G+
Sbjct: 293 QPYAFGQLNKQYIMMLSALGIKDEVFLSKQETYFKELDCLETDKEVAFRHLCARGYIGLA 352
Query: 589 YDFTSAR--------MILSGIS--LDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMG 638
S IL G + P ++L L+ + + +A K+P+ +S + G
Sbjct: 353 ERLFSREGGPDNETLEILRGFRSRVRRPPKANKLHKLLNTKPEPARALKIPIEKSRNVFG 412
Query: 639 TVDPTGILKSNEV---CIILKDGQVSWE-KVLVYRNPGLHFGDIHVLKATYVKELEDFVG 694
DP+G L+ + + QV + KV V + P H GD VL+ V++ V
Sbjct: 413 VCDPSGTLEPGQCFFQATVRGKMQVFADTKVAVVKCPCYHPGDFRVLQCVNVEDCRHLVD 472
Query: 695 TSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKR 754
+ FP G R ADEIAG D DGD +FV +P+L+ +E+ +S +A K
Sbjct: 473 ----CVVFPVQGERPHADEIAGSDLDGDKFFVCWDPDLVPECEEAP--LSYPGGEAAKKE 526
Query: 755 LIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENM 814
+ +L +F N N+++++ R L + A+ K
Sbjct: 527 RVSI------GDLISVFANY-----NSRTVS---------RLNELFNRWADVKGVTSSEC 566
Query: 815 LRLINIYYDALDAPKKSGIKVEVPEDL 841
++ ++ A+D K+G V++P L
Sbjct: 567 RKIAKLFSTAVDT-AKTGKGVDIPPRL 592
>gi|395334239|gb|EJF66615.1| RdRP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 1225
Score = 80.5 bits (197), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 158/655 (24%), Positives = 274/655 (41%), Gaps = 136/655 (20%)
Query: 226 YHC-HIS-TKGNCTFKGPYLNQT----RTHLQRE-------LGDDNILLVKFDEELGGHR 272
+ C H+S T +GP+ ++ R + Q E D+N L +FD E+ G
Sbjct: 424 FQCFHVSITPTTMILEGPFPERSNRVIRMYWQNEECFLRVSFQDENRLQFRFDREVDGRS 483
Query: 273 SSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKK-------KDPSTSPVKCYF 325
N ++ + R+GI + + F + +E + V+CY
Sbjct: 484 FINR------RFRGVLRDGITIAGAHFSFLAYSQSALKEHAVWFVKPFRHRDGHGVECY- 536
Query: 326 VRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKT---MKLEV 382
++++ I+ + +S T + A Y +R++ + T + ++V
Sbjct: 537 --VDATTIIENLGNFRVSFDTT-----------LIHCPARYAARIAQAFTATDASITVDV 583
Query: 383 DFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDD 442
D IER ED D GN + TDG G IS +LA
Sbjct: 584 D----QIERGED--LEDATGNYCF--------TDGVGTISRELA---------------- 613
Query: 443 STERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQI 502
R I R E +R + Y P QVR + G+ KG L ++ L + I I
Sbjct: 614 ---REIWRSVRERGRR--SRPDRTY---PRAYQVR--FQGS--KGMLSVDHTLSGRKIVI 661
Query: 503 RPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRN 562
RPSM K +A++ +++EV + ++P +L+R LI LL GV +
Sbjct: 662 RPSMTKFEANQS-------STIEVARAFDRPGPYFLNRPLIMLLEGLGVSYETLQALQDA 714
Query: 563 ALDDA-RGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISL----DEPYLQHRLSILMK 617
A+ DA + V S +R+A + + G+ + TSA + L + L D+ + + + +
Sbjct: 715 AVYDAQQSVTSLERSARLLEAHGLGVSFRLTSAMLGLHKLGLDPLNDDVFWRQAMDFAIN 774
Query: 618 EEKKSLQ-AGKLPVT--ESYYLMGTVDPTGILKSNEV--CI--------ILKDGQVSWEK 664
+ L+ ++PV +S+ L+G D G L+ E+ CI I +G
Sbjct: 775 HVLRELKHHARIPVPSLDSWTLVGVADVHGELQDGEIFACIDSPTESRLIYLEG-----P 829
Query: 665 VLVYRNPGLHFGDIHVLKATYVKELEDFVG--TSKYAIFFPCNGPRSLADEIAGGDFDGD 722
L+ R+P +H GD+ V+ A + + + A+ F G R L + GGD DGD
Sbjct: 830 CLISRSPTIHPGDVQVVHAIGRPPAGSALAKESLRNAVVFSIQGERPLPSCLGGGDLDGD 889
Query: 723 MYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAK 782
+Y V+ +LL R + + A K+L++ E E F+ A+
Sbjct: 890 LYNVTTRRDLLP-----PRTYTPASYEPAAKKLVE---HECTMEDVADFV--------AE 933
Query: 783 SLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEV 837
+++D + +L + D+SA+ + ++ L+L ++ A+D P KSG V V
Sbjct: 934 YISSDTLGIIATTWLKIADQSAD--GILDQDCLKLAALHSHAVDYP-KSGQPVPV 985
>gi|358378399|gb|EHK16081.1| hypothetical protein TRIVIDRAFT_10390, partial [Trichoderma virens
Gv29-8]
Length = 1247
Score = 80.5 bits (197), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 83/332 (25%), Positives = 149/332 (44%), Gaps = 49/332 (14%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRP-SMIKVKADRDLSDGQTFNSLEVVKT 529
P QVRL +KG L L+ +L + I IR SM+K S QT +L + T
Sbjct: 617 PTCFQVRL----GGIKGMLSLDSRLKGKVICIRKESMMKFP-----SSDQT--TLGICDT 665
Query: 530 SNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRN-ALKVSFNYGGMD 588
+++P + L+R I +L G +F+D ALD R V ++ N + + G +
Sbjct: 666 ASKPLRLVLNRQTIKILEDMGTNFEWFIDQQNKALDVLRNVTASASNTSTFLESQLVGTN 725
Query: 589 YDFTSARMILSGISLD---EPYLQHRLS-ILMKEEKKSLQAGKLPVTESYYLMGTVDPTG 644
F L+ + +D + +++ + +++E + ++PV + L G +D TG
Sbjct: 726 VGFPKLIKYLNKVGIDYRRDKFMKKVVDHTILRELRLLKHKARIPVDQGVTLFGIMDETG 785
Query: 645 ILKSNEVCII---------------LKDGQVSWEKVLVYRNPGLHFGDIH---VLKATYV 686
L+ ++ + LKDG VL+ R+P LH GDI V+ +
Sbjct: 786 FLEEGQIYVTFDSSYDKAQGRVKGSLKDG-----FVLITRSPALHPGDIQLAQVMTPPHG 840
Query: 687 KELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL--KHFKESERWMS 744
L D + + F G R L +++GGD DGD+Y + +P ++ +F ++
Sbjct: 841 HPLRDL----RNCVVFSQKGSRDLPSQLSGGDLDGDLYSIFWDPFVIPKSYFTPADYPRV 896
Query: 745 TSKNLS---ANKRLIDFSLEELESELFKLFLN 773
T L + + DF ++ +E+++ + N
Sbjct: 897 TPPALDRVVTREDIADFFVKFMETDILGMIAN 928
>gi|393904650|gb|EJD73758.1| RNA dependent RNA polymerase [Loa loa]
Length = 1022
Score = 80.1 bits (196), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 103/412 (25%), Positives = 180/412 (43%), Gaps = 71/412 (17%)
Query: 499 TIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALL-SYGGVPEIFFL 557
+ RPS K KA RD +E+VK S P L+R +I++L G+
Sbjct: 149 AVLFRPSQDKFKAPRD-------EYIEIVKYST-PTSVCLNRPMISILDQVSGMQGFSVH 200
Query: 558 DILRNALDDARGVFSNKRNAL-----KVSFNYGGMDYDFTSARMILS-GISL-DEPYLQH 610
+ +R + D + + + K + + +R+ L+ G +L EP+ +
Sbjct: 201 ERIRKRIHDLLDIQMTQLADMLMSEEKCREKLNELPWRVNVSRLTLARGFALTQEPFFRS 260
Query: 611 RLSILMKEEKKSLQAG---KLPVTESYYLMGTVDPTGILKSNEV------CIILKDGQVS 661
L +K K L A ++P + G +D TG L+ +V I LK S
Sbjct: 261 LLRANIKCTLKKLIAKVQIQVPPHFGRSMFGVMDETGQLQWGQVFVQCTRSIWLKTPSKS 320
Query: 662 WEK------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIA 715
K V++ +NP + GD+ V +A + EL V + FP +GPR DE+A
Sbjct: 321 AAKIILVGKVMLTKNPCIVAGDVRVFEAVDIPELHHLVDV----VVFPQHGPRPHPDEMA 376
Query: 716 GGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTR 775
G D DGD Y V +PEL+ F+ +E + +K+ S NK + + E+++ E+ K F+N
Sbjct: 377 GSDLDGDEYSVIWDPELM--FEHNEPPLDFTKSASDNKIVEE---EQVDLEMRKFFVNY- 430
Query: 776 FCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPK------ 829
+ D + + FL +A+ E + + + A+D PK
Sbjct: 431 --------IKQDSIGTISNAFLV----NADLYGITSEVCINIARKHSKAVDFPKTGNAPS 478
Query: 830 ---------KSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVK 872
K+G + PE + E++P +M ++ S+ S+ ++G +Y ++
Sbjct: 479 PLTRQWTQGKNG-NILPPE--RAERWPDFMCKNHEPSYISSRLVGQLYRRIR 527
>gi|316989903|gb|ADU77017.1| RNA-dependent RNA polymerase 1c [Cucumis sativus]
Length = 400
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 28/218 (12%)
Query: 670 NPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRN 729
NP LH GD+ +L A VK L V + FP G R +E +G D DGD+YFV +
Sbjct: 41 NPCLHPGDVRLLDAIDVKALHHMVD----CVVFPQKGKRPHPNECSGSDLDGDLYFVCWD 96
Query: 730 PEL--LKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAAD 787
EL +K K + + L D ++EE++ E F A + D
Sbjct: 97 TELTCIKQVKPMSYKPAPTIQLDH-----DVTIEEVQ-EYF------------ANYMVND 138
Query: 788 CWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFP 847
A+ + D+++ K AM ++L ++ A+D PK +G+ +P +L+V ++P
Sbjct: 139 GLGAIANAHTVFADKNS--KKAMSAECIKLAKLFSIAVDFPK-TGVPANLPRNLRVHEYP 195
Query: 848 CYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIW 885
+M + ++ S VLG ++ VK + D S EI+
Sbjct: 196 DFMDKPNKATYVSNGVLGKLFRGVKDVSS-DVSAFEIF 232
>gi|312081788|ref|XP_003143174.1| hypothetical protein LOAG_07593 [Loa loa]
Length = 1450
Score = 79.7 bits (195), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 103/412 (25%), Positives = 180/412 (43%), Gaps = 71/412 (17%)
Query: 499 TIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALL-SYGGVPEIFFL 557
+ RPS K KA RD +E+VK S P L+R +I++L G+
Sbjct: 577 AVLFRPSQDKFKAPRD-------EYIEIVKYST-PTSVCLNRPMISILDQVSGMQGFSVH 628
Query: 558 DILRNALDDARGVFSNKRNAL-----KVSFNYGGMDYDFTSARMILS-GISL-DEPYLQH 610
+ +R + D + + + K + + +R+ L+ G +L EP+ +
Sbjct: 629 ERIRKRIHDLLDIQMTQLADMLMSEEKCREKLNELPWRVNVSRLTLARGFALTQEPFFRS 688
Query: 611 RLSILMKEEKKSLQAG---KLPVTESYYLMGTVDPTGILKSNEV------CIILKDGQVS 661
L +K K L A ++P + G +D TG L+ +V I LK S
Sbjct: 689 LLRANIKCTLKKLIAKVQIQVPPHFGRSMFGVMDETGQLQWGQVFVQCTRSIWLKTPSKS 748
Query: 662 WEK------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIA 715
K V++ +NP + GD+ V +A + EL V + FP +GPR DE+A
Sbjct: 749 AAKIILVGKVMLTKNPCIVAGDVRVFEAVDIPELHHLVDV----VVFPQHGPRPHPDEMA 804
Query: 716 GGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTR 775
G D DGD Y V +PEL+ F+ +E + +K+ S NK + + E+++ E+ K F+N
Sbjct: 805 GSDLDGDEYSVIWDPELM--FEHNEPPLDFTKSASDNKIVEE---EQVDLEMRKFFVNY- 858
Query: 776 FCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPK------ 829
+ D + + FL +A+ E + + + A+D PK
Sbjct: 859 --------IKQDSIGTISNAFLV----NADLYGITSEVCINIARKHSKAVDFPKTGNAPS 906
Query: 830 ---------KSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVK 872
K+G + PE + E++P +M ++ S+ S+ ++G +Y ++
Sbjct: 907 PLTRQWTQGKNG-NILPPE--RAERWPDFMCKNHEPSYISSRLVGQLYRRIR 955
>gi|46128677|ref|XP_388892.1| hypothetical protein FG08716.1 [Gibberella zeae PH-1]
Length = 1295
Score = 79.7 bits (195), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 150/669 (22%), Positives = 258/669 (38%), Gaps = 145/669 (21%)
Query: 257 DNILLVKFDEELGGHRSSNNWNDSYSKYNEIAR---EGILVGLRCYHFFVFKDGGKEEKK 313
D L ++F EE+ + + N + + Y I R EGI +G R Y F F G + +
Sbjct: 518 DRFLRIQFTEEMEKGKITVNKDQNDEIYKRILRTMYEGIRIGDRLYEFLAF---GNSQLR 574
Query: 314 KDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLI 373
+ YF F Y +S + + F H++ V A Y +RL
Sbjct: 575 SN------GAYF-------FCPTEY---VSCDDIRQWMGQFSHIKVV---AKYAARLGQC 615
Query: 374 LSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYV 433
S T + S N +I D V ++G TDG G IS LA +
Sbjct: 616 FSTTRDVR-GISSPNCLQIPD----------VERNGYCF--TDGVGKISVFLAKLVGEDM 662
Query: 434 YKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNK 493
+ C + P Q R+ KG L +
Sbjct: 663 AIDICAD------------------------------PSAFQFRM----GGCKGVLAVWP 688
Query: 494 KLPPQT-IQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVP 552
+ T + +R S K ++D LE+++ + T L+ I +L GVP
Sbjct: 689 EDAKGTEVHVRESQKKFESDS--------KGLEIIRWARYATAT-LNLQTILILECLGVP 739
Query: 553 EIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGI----SLDEPYL 608
F +L L + A+++ + ++ + +L + EP++
Sbjct: 740 IKSFTTLLDQQLKQYELAMRDNDVAIEMLERFRDEQHNHSCLADLLRADFKTETFQEPFV 799
Query: 609 QHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKSN----------------EV 651
+ +++ KSL + ++ V +S +++G VD TG L+ + ++
Sbjct: 800 VNVINLWQSWSIKSLKEKARIHVPKSAFVLGCVDETGTLRGHSFDTEGSKEKDVHRLPQI 859
Query: 652 CIILKDGQ------VSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCN 705
+ + D + + +V RNP LH GDI V++A K L + FP
Sbjct: 860 FLQISDPKKYNKTSIIRGPCVVGRNPSLHPGDIRVVEAVDCKALHHLTD----VVVFPST 915
Query: 706 GPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRL---IDFSLEE 762
G R + + ++GGD DGD +FV +P L+ W N S + D ++++
Sbjct: 916 GDRPVPNMLSGGDLDGDDFFVIWDPSLM-----PSEWNHPPMNYSPLDPIELKRDVNVDD 970
Query: 763 LESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYY 822
L + K N + L A +A D LG +S++ L L ++
Sbjct: 971 LRNFFVKYLKNDKL------PLIAMSHRAFADE---LGPKSSK--------CLELAELHS 1013
Query: 823 DALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSVT 882
A+D P K+G + +D + K+P +M + S+ S LG IY+ V +++ V+
Sbjct: 1014 KAVDYP-KTGNPAVLRQDQQPRKWPHWMEKRH--SYHSRKALGVIYDKV-AHKKVE--FN 1067
Query: 883 EIWKLPCFD 891
+W P FD
Sbjct: 1068 PVWDRP-FD 1075
>gi|169623159|ref|XP_001804987.1| hypothetical protein SNOG_14810 [Phaeosphaeria nodorum SN15]
gi|160704927|gb|EAT77662.2| hypothetical protein SNOG_14810 [Phaeosphaeria nodorum SN15]
Length = 1674
Score = 79.7 bits (195), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 114/424 (26%), Positives = 176/424 (41%), Gaps = 78/424 (18%)
Query: 336 MGYQYILSGKTVHEARYMFMHVRTVSSVANY------MSRLSLILSKTMKLEVDFSRINI 389
+ Y + + ++R FM+ + VA +S+L + K+ ++ + FS +
Sbjct: 122 ISYHFFGHSNSQLKSRSCFMYAASKEEVARKIEGMGDLSKLRSVAKKSKRIGLLFSSAEV 181
Query: 390 ER-IEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSI 448
+ E C+D D +V KD I TDG G +S A
Sbjct: 182 STMLPSERCQDID-DVTSKD---YIFTDGCGLMSPQFA---------------------- 215
Query: 449 DRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQT-IQIRPSMI 507
+L A ++ + Y P + Q+R Y G KG L L+ L QT +Q R SM
Sbjct: 216 ---KLLAQRRNIVFRDKRYL--PSVYQIR--YRG--YKGVLTLDPTLSGQTQVQFRASMR 266
Query: 508 KVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDA 567
K K D S VV S L+ ++ LL G+ E L LD
Sbjct: 267 KFKDSPDYS-------FAVVDYSKPYAFGSLNDEIVVLLHTLGISEKTLLAKQTQHLDFI 319
Query: 568 RGV-FSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKE-----EKK 621
+ V + R+A + +Y ++ + +++L G P L LS++ +E K+
Sbjct: 320 QNVQGGDPRSAFQF-LSY--INRTELAEKLLLEGPESVRPTL---LSLVKQEYARMINKR 373
Query: 622 SLQAGKLPVTESYYLMGTVDPT------GILKSNEVCI-ILKDGQ-----VSWEKVLVYR 669
Q ++ V +S L G DPT G LK E + I +DG + +VLV R
Sbjct: 374 DEQRCRILVPKSRLLFGVCDPTAKDGCPGRLKEGECFVRITQDGDGRAQTIINTEVLVTR 433
Query: 670 NPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRN 729
NP LH GD+ K + E V I F G R AD ++GGD DGD +FV+ +
Sbjct: 434 NPCLHPGDLQKFKVVDIPEFSHLVD----CIVFTTQGKRPSADLMSGGDLDGDKFFVTWD 489
Query: 730 PELL 733
+L+
Sbjct: 490 SDLV 493
>gi|346325393|gb|EGX94990.1| RNA-directed RNA polymerase (Sad-1) [Cordyceps militaris CM01]
Length = 1102
Score = 79.3 bits (194), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 160/691 (23%), Positives = 270/691 (39%), Gaps = 159/691 (23%)
Query: 226 YHCHISTKGNCTFKGPYLN----QTRTHLQRELGD--DNILLVKFDEELGGHRSSN---N 276
++C + K N T LN ++ + R+ + D L V+F E R + N
Sbjct: 209 HYCSLVLKVNITPTCLKLNLPNVESSNRVMRKYNNLHDRFLRVQFLSETESDRIAKDRYN 268
Query: 277 WNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDM 336
+D + + +GI +G R Y F F + E + F
Sbjct: 269 NDDVWKRLLRALHKGIRIGDRTYEFLAFGNSQLREGS----------------VTFFCPT 312
Query: 337 GYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEP 396
Y LS + + F H+R ++A + +R+ S T EV R+ R+ D+
Sbjct: 313 AY---LSCDDIRKWLGNFDHIR---NIAKFGARIGQCFSTTR--EVRGIRVPTVRLIDD- 363
Query: 397 CRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEAN 456
+ +GE +DG G IS L + +D +L+
Sbjct: 364 --------IETEGECF--SDGVGIISGLLG------------------KLVVDEMKLDV- 394
Query: 457 FSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQI--RPSMIKVKADRD 514
GEP F G A KG L + + + +++ R S IK +
Sbjct: 395 ----------VGEPSAFQ----FRMGGA-KGVLAVWPREYAKHMEVCVRKSQIKFTTEA- 438
Query: 515 LSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNK 574
N+LE+VK + T L+R I +L + GV FL++L + +++
Sbjct: 439 -------NTLEIVKCAKTTTAT-LNRQTIIILEHLGVSCGAFLELLNAHIKQYEEAMTDR 490
Query: 575 RNALKVSFNYGGMDYDFTSARMI-LSGISLDEPYLQHRLSI-------LMKEEKKSLQAG 626
A+ + + +D + T+ + L +P++++ L + LMKE+
Sbjct: 491 TAAIDLLTKF--VDENQTTVIIAELLKADFQDPFVKNLLKLWRSWSLKLMKEK------C 542
Query: 627 KLPVTESYYLMGTVDPTGILKSNE--------------VCIILKDGQVSWEK-------- 664
++ V +S ++MG VD TG L+ + I L Q+S K
Sbjct: 543 RIHVEKSAFVMGCVDETGTLQGHSKKTEGSNTKRMDDLPQIFL---QISNRKYRNKTTII 599
Query: 665 ---VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDG 721
L+ RNP LH GDI V++A ++ L K + FP G RSL ++GGD DG
Sbjct: 600 KGLCLIGRNPSLHAGDIRVVQAVDMQCLRHL----KDVVVFPSKGDRSLPSMLSGGDLDG 655
Query: 722 DMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNA 781
D YFV P L+ + S N R D + +L + + K ++ F A
Sbjct: 656 DDYFVIWEPTLMPKVWNTPPMHSEPVNPQNLDR--DVEVNDLRNFVVK-YMKNDFLGLIA 712
Query: 782 KSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVE-VPED 840
S A A++K L+L ++ A+D P K+GI E
Sbjct: 713 YSHLA----------------HADKKGVNSPMCLQLAELHSQAVDYP-KTGIPAEWTRAK 755
Query: 841 LKVEKFPCYMRRDESVSFESTSVLGTIYNTV 871
+ +++P +M + +S ++ S LG +Y+ V
Sbjct: 756 YQPKEWPHFM-QPKSRTYHSRRALGKLYDRV 785
>gi|115458854|ref|NP_001053027.1| Os04g0465700 [Oryza sativa Japonica Group]
gi|113564598|dbj|BAF14941.1| Os04g0465700, partial [Oryza sativa Japonica Group]
Length = 377
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 100/214 (46%), Gaps = 29/214 (13%)
Query: 664 KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDM 723
KV + +NP LH GDI VL+A Y +L V + FP G R +E +GGD DGD+
Sbjct: 15 KVAITKNPCLHPGDIRVLEAIYDPDLVGMVD----CLVFPQRGERPHPNECSGGDLDGDL 70
Query: 724 YFVSRNPELLKHFKESERWMSTSKNLSANK-RLID--FSLEELESELFKLFLNTRFCPSN 780
YF++ + +L+ + T + +A + R++D +LEE++ +N
Sbjct: 71 YFITWDDKLIPEK------VDTPMDYTATRPRIMDHVVTLEEIQKHFVDYMIN------- 117
Query: 781 AKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPED 840
D A+ L D S + A L+L ++ A+D K+G E+P
Sbjct: 118 ------DSLGAISTAHLIHADRSPLK--ARSPECLQLATLHSMAVDF-AKTGAPAEMPRT 168
Query: 841 LKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSY 874
L+ ++P +M R E + S VLG +Y + +
Sbjct: 169 LRPREYPDFMERWEKPMYISNGVLGKLYRSAMGH 202
>gi|408392756|gb|EKJ72076.1| hypothetical protein FPSE_07701 [Fusarium pseudograminearum CS3096]
Length = 1206
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 145/649 (22%), Positives = 249/649 (38%), Gaps = 141/649 (21%)
Query: 257 DNILLVKFDEELGGHRSSNNWNDSYSKYNEIAR---EGILVGLRCYHFFVFKDGGKEEKK 313
D L ++F EE+ + + N + + Y I R EGI +G R Y F F G + +
Sbjct: 429 DRFLRIQFTEEMEKGKITVNKDQNDEIYKRILRTMYEGIRIGDRLYEFLAF---GNSQLR 485
Query: 314 KDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLI 373
+ YF F Y +S + + F H++ V A Y +RL
Sbjct: 486 SN------GAYF-------FCPTEY---VSCDDIRQWMGQFSHIKVV---AKYAARLGQC 526
Query: 374 LSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYV 433
S T + S N +I D V ++G TDG G IS LA +
Sbjct: 527 FSTTRDVR-GISSPNCLQIPD----------VERNGYCF--TDGVGKISVFLAKLVGEDM 573
Query: 434 YKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNK 493
+ C + P Q R+ KG L +
Sbjct: 574 AIDICAD------------------------------PSAFQFRM----GGCKGVLAVWP 599
Query: 494 KLPPQT-IQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVP 552
+ T + +R S K ++D LE+++ + T L+ I +L GVP
Sbjct: 600 EDAKGTEVHVRESQKKFESDS--------KGLEIIRWARYATAT-LNLQTILILECLGVP 650
Query: 553 EIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGI----SLDEPYL 608
F +L L + A+++ + ++ + +L + EP++
Sbjct: 651 IRSFTTLLDQQLRQYELAMRDNDVAIEMLERFRDEQHNHSCLADLLRADFKTETFQEPFV 710
Query: 609 QHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKSN----------------EV 651
+ +++ KSL + ++ V +S +++G VD TG L+ + ++
Sbjct: 711 VNVINLWQSWSIKSLKEKARIHVPKSAFVLGCVDETGTLRGHSFDTEGSKEKDVHRLPQI 770
Query: 652 CIILKDGQ------VSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCN 705
+ + D + + +V RNP LH GDI V++A K L + FP
Sbjct: 771 FLQISDPKKYNKTSIIRGPCVVGRNPSLHPGDIRVVEAVDCKALHHLTDV----VVFPST 826
Query: 706 GPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRL---IDFSLEE 762
G R + + ++GGD DGD +FV +P L+ W N S + D ++++
Sbjct: 827 GDRPVPNMLSGGDLDGDDFFVIWDPSLM-----PSEWNHPPMNYSPLDPIELKRDVNVDD 881
Query: 763 LESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYY 822
L + K N + L A +A D LG +S++ L L ++
Sbjct: 882 LRNFFVKYLKNDKL------PLIAMSHRAFADE---LGPKSSK--------CLELAELHS 924
Query: 823 DALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTV 871
A+D P K+G + +D + K+P +M ++ S+ S LG IY+ V
Sbjct: 925 KAVDYP-KTGNPAVLRQDQQPRKWPHWM--EKRYSYHSRKALGVIYDKV 970
>gi|403177737|ref|XP_003336185.2| hypothetical protein PGTG_17766 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375173183|gb|EFP91766.2| hypothetical protein PGTG_17766 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1297
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 98/398 (24%), Positives = 172/398 (43%), Gaps = 79/398 (19%)
Query: 358 RTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDG 417
+ ++ A YM+R+ + T K V I+ IED V ++G + TDG
Sbjct: 601 KVINIPARYMARVGQAFTTTRK-AVTLQPSQIKLIED----------VERNGS--VFTDG 647
Query: 418 TGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVR 477
G IS LA K + + + EL+A+ Q+R
Sbjct: 648 VGTISLSLAKKVEHALAGPTGSKPPT--------ELQAS----------------CYQIR 683
Query: 478 LFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTY 537
L KG L L+ L +++RPSM K +G+++ +L++ + ++P +
Sbjct: 684 L----GGYKGMLSLDTTLEGDIVRLRPSMKKF-------EGESY-TLDIAEKFDRPFPAF 731
Query: 538 LSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVS---FNYGGMDYDFTSA 594
L+R LI +L G+ FLD A + + N + ++ S G+
Sbjct: 732 LNRQLIKILEDLGISGQVFLD----AQAETVAMVENSQGSMNQSSLVMERAGLGSAVELP 787
Query: 595 RMILSGISL---DEP------YLQHRLSILMKEEKKSLQAG-KLPVTESYYLMGTVDPTG 644
+++ L D P ++Q L +L + L+ ++P+ S+ L+G D G
Sbjct: 788 QILKQLGRLMDSDRPEEIRCSFVQDSLDLLAVHCLRELKYNTRIPLPGSFNLVGVADEDG 847
Query: 645 ILKSNEVCIILK-DGQVSW---EKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYA- 699
L N++ + ++ GQ + + + R+P LH GDI V+ A + VG+ + A
Sbjct: 848 CLLENQIFVPIQLPGQRKYCLKGRFAIARSPCLHPGDIQVVYAIG----DPPVGSRRLAS 903
Query: 700 ----IFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
+ FP G RSL +AGGD DGD+Y + +P+++
Sbjct: 904 LVNCVVFPVIGKRSLPSCLAGGDLDGDLYTIITDPQMV 941
>gi|302698389|ref|XP_003038873.1| hypothetical protein SCHCODRAFT_64962 [Schizophyllum commune H4-8]
gi|300112570|gb|EFJ03971.1| hypothetical protein SCHCODRAFT_64962 [Schizophyllum commune H4-8]
Length = 984
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 127/287 (44%), Gaps = 44/287 (15%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P QVRL KG L ++ KL + + +RPSMIK +A L+ LE+ +
Sbjct: 612 PASFQVRLM----GSKGMLSVDYKLRGRAVCLRPSMIKFEAPDSLN-------LEIARAF 660
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYG-GMDY 589
++P K YL+R LI LL GVP FL A+ DA + +A ++ +G G +
Sbjct: 661 DRPGKYYLNRPLIMLLEGLGVPYETFLKYQDLAVRDAHRATESLEHAARMLEAFGLGTSF 720
Query: 590 DFTSARMILSGISLD----EPYLQHRLSILMKEEKKSLQ-AGKLPVTESYYLMGTVDPTG 644
S + L + +D + + L + + L+ ++P+ +Y L+G D
Sbjct: 721 RLPSVLLNLEKLGIDHLPGDAFYDRMLEFAINHVLRVLKNHARIPIPGAYTLVGVADVHR 780
Query: 645 ILKSNEVCIILKD---GQVSWEK--VLVYRNPGLHFGDIHVLKAT--------YVKE--- 688
L EV +K+ ++ + + +L+ R+P +H GD+ V++A + +E
Sbjct: 781 YLAEGEVFACVKEVDSNRIEYLEGDILISRSPTIHPGDVQVVRAIGRPPAGSPFAQEPLA 840
Query: 689 -----------LEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMY 724
L F + + +G R L + GGD DGD+Y
Sbjct: 841 NTVVFSVKGMLLGPFQARHEQHLTVSHSGSRPLPSMLGGGDLDGDVY 887
>gi|281207108|gb|EFA81291.1| RNA-directed RNA polymerase [Polysphondylium pallidum PN500]
Length = 2852
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 109/462 (23%), Positives = 207/462 (44%), Gaps = 60/462 (12%)
Query: 500 IQIRPSMIKVKADRDLSDGQTFN-SLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLD 558
I +R SM K +D +N +LEV+ S++ + L+R +I LL GV + FFL
Sbjct: 1527 IYLRKSMRKFNT----TDEHAYNRTLEVISVSSK-KACNLNRQIINLLVGLGVLDGFFLS 1581
Query: 559 ILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSIL-MK 617
+ + ALD +F+++ + +D F ++ ++P + L + +K
Sbjct: 1582 LQQAALDKLAHIFNDESVRRHIMHELSSIDEAFDEL-----DLAANDPLICSSLQLCYLK 1636
Query: 618 EEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIIL----KDGQVSWE----KVLVYR 669
+ + + + + ++G D +GIL +EV + + +DG +S + +V V +
Sbjct: 1637 KLDQIKDKCMIEIDSARTVLGVSDESGILGPDEVFLQISIDEEDGHISRKVITGQVFVCK 1696
Query: 670 NPGLHFGDIHVLKATYVKELED-FVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSR 728
NP LH GDI VL A V EL + +V I F NG + +G D DGD YFV
Sbjct: 1697 NPCLHPGDIRVLTAVDVPELRNCYVD----VIAFSQNGEVPNFKQCSGSDLDGDRYFVGF 1752
Query: 729 NPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADC 788
+ ++K ++ SAN + ++ + +L K ++ S K A
Sbjct: 1753 DQTMVKFITPEPPFLGDE---SANTK-VEPPYDGSHKQLVKQYITNITRGSLGK--IALS 1806
Query: 789 WQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLK-----V 843
A+ D+F S A++ + I + DA K+G+ +VP+ +K
Sbjct: 1807 HLAICDKF------SPTHPLAIELAIQHFIEV--DAF----KTGVNGKVPDIVKKHLNYF 1854
Query: 844 EKFPCYMRRD--ESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCFDDGVP----EA 897
+ +P +M + + S +LG +Y +A+ R + + + D+G+ +
Sbjct: 1855 KLYPNFMESSMPKKNYWVSHKILGKLYQISVPLKAIPRYIPDTF----VDEGLLVDGYQE 1910
Query: 898 CMTKWKGYYDQYRWEMKEAIDKCTVEREEAAELVIEKYKQIL 939
+ K Y +Y++ + + + ++REE +++IE K+ +
Sbjct: 1911 YLADAKKTYTRYKFAINSLLTRYDIDREE--DIIIEFIKETI 1950
>gi|409039622|gb|EKM49158.1| hypothetical protein PHACADRAFT_201955 [Phanerochaete carnosa
HHB-10118-sp]
Length = 908
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 116/479 (24%), Positives = 188/479 (39%), Gaps = 96/479 (20%)
Query: 413 IHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPL 472
+ TDG G S LA C A+T + P
Sbjct: 322 VFTDGVGHFSHSLAQAC-------------------------------AKTLGYRLIPVS 350
Query: 473 LMQVRLFYNGTAVKGTLLL--NKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
Q+R+ KG L + ++ L +++RPSMIK++ + T N ++V S
Sbjct: 351 AAQIRI----GGAKGVLAVVQDETLGENEVRLRPSMIKLQG---VKPEPTLNIIKVATYS 403
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGV---FSNKRNALKVSFNYGGM 587
K L+R I L+ GV DI +G+ F R A +F
Sbjct: 404 ----KATLNRQAILLMEDRGVSSDTLFDIFTQEKRRIQGLESGFDPMRLASVTTFPL--- 456
Query: 588 DYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQ-AGKLPVTESYYLMGTVDPTGIL 646
AR + I +P +Q+ S++ L+ + ++ES YLMG D T L
Sbjct: 457 ------ARALRHDIK--DPVVQNVTSLVKCRLLCDLKWKAWIELSESAYLMGIADETDSL 508
Query: 647 KSNEV-CIILKDG---QVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFF 702
+ E+ C I G QV + +YRNP LH GD+ ++ A +L + I F
Sbjct: 509 QEGEIFCQIHPSGSDPQVIEARCTIYRNPCLHPGDVRLVTAVDCPKLRHL----RNVIVF 564
Query: 703 PCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEE 762
G R L + +AGGD DGD Y + +P LL M + A + ++E+
Sbjct: 565 STRGCRDLPNMLAGGDLDGDCYSLIWDPRLLIPEGGEYEPMDYTPP-PAVRSEYPVTIEQ 623
Query: 763 LESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYY 822
+ FL+T + D V + + L D +E L ++
Sbjct: 624 TKQH----FLDT---------MKNDVLGRVCNAHMALADLHGPSDFQCRE----LASLAS 666
Query: 823 DALDAPKKSGIKVEVPEDLKVEKFPCYM----------RRDESVSFESTSVLGTIYNTV 871
A+D K+G+ V+ E ++E++P +M ++ E S+ S VLG ++ +
Sbjct: 667 QAVDF-SKTGVAVQQSEIPRLEEYPDFMGKEYKSIRIFKKQEIRSYSSEKVLGRMFREI 724
>gi|389747663|gb|EIM88841.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 890
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 123/508 (24%), Positives = 202/508 (39%), Gaps = 114/508 (22%)
Query: 241 PYLNQTRTHLQRELGD--DNILLVKFDEE---LGGHRSSNNWNDS-------YSKYNEIA 288
P +T +L R D D L V+F +E L R +N +D+ +++
Sbjct: 361 PPQMETSNNLLRTFKDHADRFLRVQFIQEESDLTVTRETNEIDDALQGGRGLFARVRRTL 420
Query: 289 REGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVH 348
+ GI V R Y F F G + K K C+ + E F Q IL
Sbjct: 421 KYGIHVAGRKYVFLCF--GESQLKSK-------GCWMI-AEKEGF---SVQGIL------ 461
Query: 349 EARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKD 408
++M + +A + +R L LS + + +D + +E I D D G
Sbjct: 462 --KWM-GDLDKERVIAKHAARQGLCLSTSRAIPLD---LQVEFIHDITRTDSQG------ 509
Query: 409 GEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYG 468
+ + TDG G S+++A C ++ E DV+ + YG
Sbjct: 510 -KEYVFTDGMGDCSQEVANVCARFMGIE---------------------GDVSAVQVRYG 547
Query: 469 EPPLLMQVRLFYNGTAVKGTLLLNK----KLPPQTIQIRPSMIKVKADRDLSDGQTFNSL 524
T +KG + +++ + P T+++R SM+K K S N+L
Sbjct: 548 --------------TGIKGVISVSEDPLMRGNPYTLRVRDSMVKFK-----SSNPGLNAL 588
Query: 525 EVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGV---FSNKRNALKVS 581
+V S L+R +I L+ GV LDI + +G+ F +R + +
Sbjct: 589 KVATYS----PATLNRQVILLMESLGVSPDTLLDIFKTEKTKIQGLEASFGQERLSRASA 644
Query: 582 FNY-GGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTV 640
F +D F ++ S + L ++ RL +K + + + +S +LMG V
Sbjct: 645 FPLEKALDSGFKDDPLVASIVRL----VKCRLLSDLKWK------AWIEIPKSAFLMGVV 694
Query: 641 DPTGILKSNEVCIILKDGQVSWEKVL----VYRNPGLHFGDIHVLKATYVKELEDFVGTS 696
DPTG L+ E+ ++ S V+ YRNP LH GD+ +KA +
Sbjct: 695 DPTGTLQEGEIFCQIQPPNSSPSVVVGDCTAYRNPCLHPGDVRSVKAVDYMSMRHL---- 750
Query: 697 KYAIFFPCNGPRSLADEIAGGDFDGDMY 724
+ I F G R L + + GGD DGD +
Sbjct: 751 RNVIVFSTLGHRPLPNMMGGGDVDGDFF 778
>gi|403168646|ref|XP_003328239.2| hypothetical protein PGTG_09533 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375167590|gb|EFP83820.2| hypothetical protein PGTG_09533 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1246
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 158/711 (22%), Positives = 284/711 (39%), Gaps = 144/711 (20%)
Query: 205 KNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGDDNILLVKF 264
K +QE LK + G + T + +GP + Q+ + L+ +N L V
Sbjct: 413 KASAQEANLNHLKIEGGDSFPCRTVTITPTRLSLQGPQIEQSNSILRLYQQTENFLRVSL 472
Query: 265 DEELGGH-RSSNNWNDSY---SKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSP 320
+E G R+S + ++Y +G+++ R + F + + ++ + +
Sbjct: 473 ADETGHRLRASREVEIHHLLRNRYRPFLTKGMILCGRKFEFLGYSNSALKDHQ-----AW 527
Query: 321 VKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKL 380
C F + + +++ ++ F V + A YM+R++ + T +
Sbjct: 528 FVCPFYKGDQ----------LVTAASIRAKLGDFSKVIRIP--ARYMARIAQAFTSTRR- 574
Query: 381 EVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTN 440
+ + R++D V ++G TDG G IS+DL
Sbjct: 575 SLTLRPSEVTRMDD----------VERNGSCF--TDGVGTISKDLV-------------- 608
Query: 441 DDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTI 500
D R ++ + + S Q+RL KG L L+ L + +
Sbjct: 609 -DEVHRVLNVGNIRKSISSTC------------YQIRL----GGFKGMLSLDPTLKGKVV 651
Query: 501 QIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDIL 560
++RPSM K A L +L++ T +P YL+R LI LL G+P FL +
Sbjct: 652 RMRPSMDKFDAPDSL-------TLDIAGTFTKPLVAYLNRPLIKLLEDLGIPSEVFLRLQ 704
Query: 561 RNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEK 620
+ R V N R++ K++ N Y S SG+ P + H+LS L+ +++
Sbjct: 705 DKII---RKV-ENSRSSPKLAGNL-MQQYSMGSG----SGM----PSMLHKLSELLVDDR 751
Query: 621 K-------------SLQA-------GKLPVTESYYLMGTVDPTGILKSNE--VCIILKDG 658
++Q G++P+ +SY L+G D L + VC+ +
Sbjct: 752 AVESDFIEECYDLMTVQCLRDLKYRGRIPLDKSYTLVGVADEDNFLPPDSIYVCVQTPNS 811
Query: 659 QVSWEK--VLVYRNPGLHFGDIHVLKAT------YVKELEDFVGTSKYAIFFPCNGPRSL 710
+ + V R+P LH GD+ V+ A L V + FP G RSL
Sbjct: 812 APMYLEGSFAVTRSPSLHPGDVRVVNAVGKLDPKRAPRLSSLVN----CVAFPIQGERSL 867
Query: 711 ADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKL 770
+ GGD DGD++ V P+L+ + +R S S R +D + F
Sbjct: 868 PSCLGGGDLDGDLFTVIGLPQLVPKRSKIQRAASYS---PPEMRKLDRDCTIADGADF-- 922
Query: 771 FLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKK 830
FL+ +++D + R L + D+ E + E+ ++L ++ DA+D P K
Sbjct: 923 FLDY---------ISSDLVGMIATRHLHIADQCPE--GTLNESCIKLAELHSDAVDYP-K 970
Query: 831 SGIKVEVPE--DLKVEKFPCYMRRDESVS------FESTSVLGTIYNTVKS 873
+G+ V + + V P +M + S +ES +VLG ++ + +
Sbjct: 971 TGVPVNIRSLPNPPVRMKPDFMCHEHDSSKEGEDYYESPNVLGKLFREIPA 1021
>gi|393244916|gb|EJD52427.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 813
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 110/246 (44%), Gaps = 21/246 (8%)
Query: 500 IQIRPSMIKVKADRDLSDGQTFNSLEVVKTS-NQPRKTYLSRNLIALLSYGGVPEIFFLD 558
I RPSM K + + +E+ K S +P L+ I LL GV F
Sbjct: 230 IAYRPSMFKYRGGPQI--------VELNKISKTRPDSARLNIQFILLLLTLGVGVEVFQQ 281
Query: 559 ILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSAR--------MILSGISLDEPYLQH 610
+L L+ +FS++++A+ N + D + R M+ +G L EP LQ
Sbjct: 282 LLSIQLERIDNIFSDRKSAIAFLENAYDVTLDSNATRSLYQDAFLMLHAGFDLSEPQLQW 341
Query: 611 RLSILMKEEKKSLQAG-KLPVTESYYLMGTVDPTGILKSNEVCIIL--KDGQVSWEKVLV 667
L+ L + K LQ ++ V +S L G D T L+ +EV + L + G V+V
Sbjct: 342 SLNTLRTQMLKRLQDKLQIEVQDSAMLFGVCDETNSLEEDEVYVNLPERGGGFGGRTVVV 401
Query: 668 YRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVS 727
+NP GDI V KA L T+ RS AD+++GGD DGD +FVS
Sbjct: 402 MKNPAYAPGDIRVFKAVDRPSLR-ICPTNCIVFASSARCGRSPADKMSGGDLDGDTFFVS 460
Query: 728 RNPELL 733
+ L+
Sbjct: 461 WDSSLI 466
>gi|125541045|gb|EAY87440.1| hypothetical protein OsI_08849 [Oryza sativa Indica Group]
Length = 1067
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 160/767 (20%), Positives = 289/767 (37%), Gaps = 190/767 (24%)
Query: 196 SEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELG 255
SE + K R Q +SL D G ++Y + T F GP +N + ++
Sbjct: 345 SEQYSKFRRSRYVQPSPNISL--DDGLVYVYRVQV-TPAKVYFYGPEINVSNRVVRNFSS 401
Query: 256 D-DNILLVKF-DEELGGHRSSN-----------NWNDSYSKYNEIAREGILVGLRCYHFF 302
D +N L + F DE+ R+++ N Y + + +GI +G + + F
Sbjct: 402 DIENFLRISFVDEDCEKLRATDLSPRSASGHDANRTALYKRVLLVLSDGITIGGKNFEFL 461
Query: 303 VFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSS 362
F S+S ++ ++SA++ Q G + R R + +
Sbjct: 462 AF------------SSSQLR------DNSAWMFASRQ----GLAASDIRTWMGDFRNIRN 499
Query: 363 VANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFIS 422
VA Y +RL S + + + + +E I D K+G + +DG G IS
Sbjct: 500 VAKYAARLGQSFSSSTE-TLKVQKYEVEEISD-----------IKNGTQHVFSDGIGKIS 547
Query: 423 ----EDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRL 478
++A+KC N A P Q+R
Sbjct: 548 SAFANEVAMKC--------------------------NLKRFA---------PSAFQIR- 571
Query: 479 FYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYL 538
Y G KG + ++ + +R SM+K ++D D ++ QP +L
Sbjct: 572 -YGG--YKGVVAVDPT-SRWKLSLRKSMLKFQSDNITVDVLAYSKY-------QP--GFL 618
Query: 539 SRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMIL 598
+R LI LLS GV + F A++ + ++ + A++ + ++L
Sbjct: 619 NRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKELLL 678
Query: 599 SGISLD-EPYLQHRLSILMKEEKKSLQA-GKLPVTESYYLMGTVDPTGILKSNEVCIILK 656
G D EPYL L + L+ ++ + + +MG +D T LK
Sbjct: 679 CGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLK--------- 729
Query: 657 DGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAG 716
+ +V + G++ D R +E +G
Sbjct: 730 -----YGQVFIRATSGVNDND------------------------------RPHPNECSG 754
Query: 717 GDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLID--FSLEELESELFKLFLNT 774
D DGD+YFVS +P L+ R ++ A +D ++EE+E +N
Sbjct: 755 SDLDGDIYFVSWDPSLI-----PPRMVTPMDYTPAPTETLDHDVTIEEVEEYFTNYIVNE 809
Query: 775 RF-CPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGI 833
+NA + AD E+ A + L ++ A+D PK +G+
Sbjct: 810 SLGMIANAHVVFAD----------------KEDLKAESSPCIELAKLFSIAVDFPK-TGV 852
Query: 834 KVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSY---------EAVDRSVTEI 884
+P +L V+++P +M + + V++ES V+G +Y +K + E RS
Sbjct: 853 PALIPPELHVKEYPDFMEKLDKVTYESKGVIGKLYREIKKHTPHIKHFTREVARRSYDTD 912
Query: 885 WKLPCFDDGVPEACMTKWKGYYDQYRWEMKEAIDKCTVEREEAAELV 931
+ ++D + EA K D+Y +++ +D ++ E AE++
Sbjct: 913 MIVDGYEDYITEAMALK-----DEYDFKLGNLMDHYGIKSE--AEII 952
>gi|119183445|ref|XP_001242762.1| hypothetical protein CIMG_06658 [Coccidioides immitis RS]
gi|392865671|gb|EAS31478.2| hypothetical protein CIMG_06658 [Coccidioides immitis RS]
Length = 1372
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 90/325 (27%), Positives = 139/325 (42%), Gaps = 45/325 (13%)
Query: 498 QTIQIRPSMIKVKADRD-----LSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVP 552
+ IQI S +K K L D Q + EVV S + R L+ L+ +L +GGV
Sbjct: 756 ECIQISGSQLKTKPHPSDCRMMLDDHQL--TFEVVSWSKELRPVNLNVQLLMVLQHGGVQ 813
Query: 553 EIFFLDILRNALD----DARGVFSN--------KRNALKVSFNYGGMDYDFTSARMILSG 600
+++R ++ + +G+ +N ++ L +D DF + + +
Sbjct: 814 TDRLKNLVRCEMNTWYQEFKGIITNEIASRAWVQKQGLYEKRKTRRID-DFPTENVEQAI 872
Query: 601 ISLDEP-------YLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCI 653
+ LD YL +RL + + L + K+ + ES Y DP +L +EV +
Sbjct: 873 LLLDSGFHPLKSVYLMNRLKTFLDDYCARLDSLKIRIPESTYAYCIADPYNVLAEDEVHL 932
Query: 654 ILK-----DGQVSWE--KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNG 706
+G + VLV RNP DI +A + KEL F K I FP G
Sbjct: 933 GFSRPWDSEGYTDLDGMDVLVGRNPAHLPSDIQKRRAVFKKELRHF----KDVIVFPTAG 988
Query: 707 PRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKR--LIDFSLEELE 764
LA ++GGD+DGD + +P+L+ F + K + K LID S EEL+
Sbjct: 989 ALPLASMLSGGDYDGDQVWTCWDPQLVNQFTNTP---FDPKKIPERKEFGLIDCS-EELK 1044
Query: 765 SEL-FKLFLNTRFCPSNAKSLAADC 788
+ F FL F + A SL C
Sbjct: 1045 ANFDFDGFLTKMFVFNAAPSLLGHC 1069
>gi|15419599|gb|AAK97084.1|AF293414_1 RNA-dependent RNA-polymerase [Giardia intestinalis]
Length = 1377
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 107/422 (25%), Positives = 170/422 (40%), Gaps = 99/422 (23%)
Query: 398 RDKDGNVVY-KDGEALIHTDGTGFISEDLALK---CPTYVYKEKCTNDDST-------ER 446
R++D +V K+ + TDG G IS DL L+ C + E+ D T +
Sbjct: 290 REEDVQIVSDKEYNGYVFTDGAGEISYDLMLEIALCLDKLKIEQLHKDTETYYDNGFADT 349
Query: 447 SIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSM 506
+ D + + +T S+ + P +Q+R + GT KG L+LN LPP+TI S
Sbjct: 350 NEDSEHTVPHLQPNLKTASNLIQVPSAVQMR--WAGT--KGVLILNALLPPRTILFHKSQ 405
Query: 507 IKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNAL-- 564
+K QT L V + S K ++ +I LLS GVP+ FL+++ L
Sbjct: 406 VKFSIPNPTETQQTLEILRVAQRS----KGMINMQIIVLLSEMGVPDDVFLNLVYQDLQK 461
Query: 565 --------DDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILM 616
D R + + S + G +M+++G+ + EP LQ L L
Sbjct: 462 TLLFLEPVDRCRHQADLYQLVSRASHSSSGK----LILQMLMAGVDITEPCLQFLLMKLQ 517
Query: 617 KEEKKSLQAG-KLPVTESYYLMGTVDPTGILKSNEVCIILK------------------- 656
+ +S++A + V +S +G D +LK EV + L+
Sbjct: 518 MMQLRSMKANMRFYVPDSRIFVGVYDCFDLLKEGEVYVGLQEPLSISKWAAATHLKAMSN 577
Query: 657 ------------DGQVS-----------WEKVLVYRNPGLHFGDIHVLKATYVKE----- 688
D Q+S +V+V +NP + GD+ + A + E
Sbjct: 578 DTQQEALLPPDLDLQISDIAVGLNISCVEGRVVVAKNPCFYRGDVRIYHAVNIFERLRRE 637
Query: 689 ---------LEDFV------GTSKYAIFFP--CNGPRSLADEIAGGDFDGDMYFVSRNPE 731
L FV G + I FP G R + D ++G D DGD+Y+VS +
Sbjct: 638 ASRQNLKPVLPSFVAQEAIRGMYRGVICFPKYYEG-RPMTDCLSGSDLDGDIYWVSWDAS 696
Query: 732 LL 733
LL
Sbjct: 697 LL 698
>gi|320593975|gb|EFX06378.1| RNA-dependent RNA polymerase [Grosmannia clavigera kw1407]
Length = 1259
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 137/618 (22%), Positives = 245/618 (39%), Gaps = 122/618 (19%)
Query: 257 DNILLVKFDEELG------GHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKE 310
D + V+F +E G G R+S + Y ++ +I + GI + R Y F +
Sbjct: 429 DCFIRVQFCDENGDSLRLLGRRTS--YEKVYKRFIDIMKNGIQIVGRTYKFLGW------ 480
Query: 311 EKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRL 370
S S ++ + + + D G + + T+ F +R+ + A +R+
Sbjct: 481 ------SHSSLRAHSMWFTAPFIDDTGR--LQTHLTIISTLGDFAGIRSPAKCA---ARI 529
Query: 371 SLILSKT-MKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKC 429
S+T + + +I++ ++D + KDG V+ +DG G IS D A
Sbjct: 530 GQAFSETPYAVPLSEHKISVMLVDD--VKSKDGKHVF--------SDGVGTISLDAAAAV 579
Query: 430 PTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTL 489
YV K K P QVR Y G KG L
Sbjct: 580 WKYVPKSK-------------------------------RNPTCFQVR--YAGA--KGML 604
Query: 490 LLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYG 549
L+ +L I +RPSMIK +++ +LE+ + + YL+R +I +L
Sbjct: 605 SLDTRLQGSQILLRPSMIKFESNET-------ENLEICDVA-KAMPLYLNRQMIKILEDM 656
Query: 550 GVPEIFFLDILRNALDDARGVFSNKRN-ALKVSFNYGGMDYDFTSARMILSGISLD---E 605
VP +FL + +AL R + S+ N A + G ++ + LD E
Sbjct: 657 SVPRKWFLRLQNDALQQLRLIASSAYNMAYFLKHQSVGTSIKLHKLLLLTDKLGLDYRTE 716
Query: 606 PYLQHRL-SILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQ----V 660
P+L+ +++++E + ++PV L G +D T L +V + + Q
Sbjct: 717 PFLRRAAEAVVLRELRLLKHKARIPVPFGITLFGVMDETEFLAKGQVYVTFETKQGLKPQ 776
Query: 661 SWEK-------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADE 713
+E+ +LV R+P LH GDI E S + F G R L +
Sbjct: 777 RFEQPPGHAVYLLVTRSPALHPGDIQWACNMIPPEGHPLRELSN-CVVFSAKGARDLPSQ 835
Query: 714 IAGGDFDGDMYFVSRNPEL-----LKHFKESERWMSTSKNLSANKRLIDFSLEELESELF 768
++GGD DGD++ + + E+ LK ++ +E +N+ + D ++ F
Sbjct: 836 LSGGDLDGDIFNLIWDREVCRPVELKTYRAAEYARVPPQNIWREVQTEDI------AQFF 889
Query: 769 KLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAP 828
F+ T D + R + L D+ +E + + + + ++ A+D
Sbjct: 890 IDFMKT------------DHLGTIATRHMILADQ--KEMGTLDSDCIAMAELHSTAVDF- 934
Query: 829 KKSGIKVEVPEDLKVEKF 846
K+GI ++ E + F
Sbjct: 935 SKTGIPADLNELRRASPF 952
>gi|302420105|ref|XP_003007883.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
gi|261353534|gb|EEY15962.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
Length = 1465
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 105/449 (23%), Positives = 178/449 (39%), Gaps = 130/449 (28%)
Query: 469 EPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVK 528
E P Q R+ KG L + + + IR S K KA TFN LE+++
Sbjct: 674 ETPSAFQFRM----GGCKGVLAVWPEAKGMYVHIRKSQEKFKA--------TFNGLEIIR 721
Query: 529 TSNQPRKTYLSRNLIALLSYGGVPEIFFLDILR-------NALDD--------ARGVFSN 573
+ T L+R I +L+ G+ F+D+L+ A++D R + N
Sbjct: 722 CARFSAAT-LNRQTITILTSLGIKSEVFMDLLQRQLHSYEKAMNDQGAAAVLLGRHIDEN 780
Query: 574 KRN-ALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQ-AGKLPVT 631
+ AL+ N+G M +D + EP++ L + K L+ ++ V
Sbjct: 781 HTSLALRDLINWGFMRHD------------VQEPFVLTILQLWRVWSMKLLRDKARIVVD 828
Query: 632 ESYYLMGTVDPTGILKSNEVCIILKDGQVSWEKV-------------------------- 665
+ +++G VD T L+ + +GQ + V
Sbjct: 829 KGAFVLGCVDETATLRGHNRA---SEGQTTSRNVELLPQIFLQIPDPDDRHFFNVIKGVC 885
Query: 666 LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYF 725
+V RNP LH GDI V++A V +L K + FP G + ++GGD DGD +F
Sbjct: 886 IVGRNPSLHPGDIRVVEAVDVPQLRHM----KNVVVFPSTGDVDVPSMLSGGDLDGDDFF 941
Query: 726 VSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLA 785
V +P+L+ W N R +D + + +
Sbjct: 942 VIWDPDLIPPV-----W---------NFRPMDNAAPQTK--------------------- 966
Query: 786 ADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEK 845
V+DR + D S L+L ++ A+D KSG E+ +L+ +
Sbjct: 967 ------VLDRDVNTKDLS-----------LQLAKLHSKAVDY-VKSGDPAELGRELRARR 1008
Query: 846 FPCYM--RRDESVSFESTSVLGTIYNTVK 872
+P +M RR+++ + S + LG IY+ ++
Sbjct: 1009 WPHFMGGRRNKNSIYHSYTALGQIYDRIQ 1037
>gi|290974592|ref|XP_002670029.1| RNA-directed RNA polymerase [Naegleria gruberi]
gi|284083583|gb|EFC37285.1| RNA-directed RNA polymerase [Naegleria gruberi]
Length = 663
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 98/399 (24%), Positives = 174/399 (43%), Gaps = 42/399 (10%)
Query: 486 KGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIAL 545
KG L ++ L + I R S K + + LE+V S + R +L+R I +
Sbjct: 84 KGVLAIDPTLKGEQIVFRKSQFKFTSIQ--------KQLEIVDYSKR-RSGFLNRQFITI 134
Query: 546 LSYGGVPEIFFLDILRNALDDARGVFSNKRNALK-VSFNYGGMDYDFTSARM-ILSGISL 603
L+ G+ + F+ R + + + A + +S + F + + I+
Sbjct: 135 LTALGIKDEIFMTKQREMIRSILSITDDVSKAYEWLSIYHSNHTRTFICHVLKYVPEIAT 194
Query: 604 DEPYLQHRLSILMKEEKKSLQ-AGKLPVTESYYLMGTVDPTGILKSNEVCIILK------ 656
E ++ + LS ++ K L+ K+ + +S YLMG +D G+L+ NE+ + L
Sbjct: 195 SENFIMNMLSSYKEQLLKGLRDKTKIYIEKSAYLMGAIDEYGVLEENEIFVNLSPIFHRP 254
Query: 657 --DGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEI 714
+ V + +V +NP LH GD+ ++ A EL + F G R + + I
Sbjct: 255 NAEFGVVKGRCIVGKNPSLHKGDLRIVTAVDRPELYHL----NDVVVFSKKGKRPITNMI 310
Query: 715 AGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSA---NKRLIDFSLEEL-ESELFKL 770
G D DGD +FV +P+L+ +SE M S A NK+ + ++ + ++
Sbjct: 311 TGSDLDGDQFFVYWDPDLIPE-SDSEP-MDYSVGAVAKPTNKKDEEEEEYKIKQDDIIDF 368
Query: 771 FLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKK 830
F+ F N L A+ A D F G S E L L ++ A+D+ K
Sbjct: 369 FI--EFITRNNLGLIANTHLANSD-FRKNGLTSKE--------CLTLCELHSTAVDSA-K 416
Query: 831 SGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYN 869
SG +P +K+ ++P +M ++S VLG +++
Sbjct: 417 SGKFAIIPSKVKLYEYPHFMISSMKRKYKSKKVLGKLFD 455
>gi|400598650|gb|EJP66359.1| RNA dependent RNA polymerase [Beauveria bassiana ARSEF 2860]
Length = 1260
Score = 77.0 bits (188), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 123/264 (46%), Gaps = 24/264 (9%)
Query: 483 TAVKGTLLLNKKLPPQTIQIRP-SMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRN 541
VKG L+L+ +L + I +R SM+K + Q L + +++P + L+R
Sbjct: 643 AGVKGLLVLDTRLQGKVICVRKESMMKFPS-------QDLQELGICDLASRPLRLVLNRQ 695
Query: 542 LIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALK-VSFNYGGMDYDFTSARMILSG 600
+I +L G + +FL + +AL+ R V + N + + G +S L
Sbjct: 696 VIKILEDMGTRDSWFLALQHDALEFLRAVTATALNTSTFLQYQDIGSAIGLSSFIKQLDK 755
Query: 601 ISLD---EPYLQHRLS-ILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILK 656
+ +D + +L+ + ++++E + ++PV + L G +D TG L+ N+V +
Sbjct: 756 MDIDYRRDAFLKSVVEHVVLRELRLLKHKARIPVHKGVTLFGVMDETGFLQENQVYVTYD 815
Query: 657 ----------DGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNG 706
D ++ ++V R+P LH GDI ++ E + + + I F G
Sbjct: 816 ATRGKSGERLDTTLTDGPIIVTRSPALHPGDIQYVQMVTPPESHP-LRSLRNCIVFSQKG 874
Query: 707 PRSLADEIAGGDFDGDMYFVSRNP 730
R L +++GGD DGD+Y + +P
Sbjct: 875 SRDLPSQLSGGDLDGDLYNIIWDP 898
>gi|769816|emb|CAA83245.1| unnamed protein product [Phanerochaete chrysosporium]
Length = 953
Score = 77.0 bits (188), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 112/230 (48%), Gaps = 21/230 (9%)
Query: 462 RTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTF 521
R S + P +Q+R + G+ KG L ++ L + I +RPSMIK +A L+D
Sbjct: 623 RGGSRWKTYPRALQIR--FRGS--KGMLSVDHTLQGRAICLRPSMIKFEAPESLTD---- 674
Query: 522 NSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVS 581
+E+ + N+P YL+R LI ++ + GVP F ++ A+++A+ + A ++
Sbjct: 675 --IEIARAFNRPGPFYLNRPLIMIMEHLGVPYEVFEELQDMAVEEAQESVESLEKAARLL 732
Query: 582 FNYG-GMDYDFTSARMILSGISL----DEPYLQHRLSILMKEEKKSLQ-AGKLPVTESYY 635
+G G Y TS + L + + + + Q + + + L+ ++PV ++
Sbjct: 733 ETFGLGASYRLTSIFLSLHKLGVGPLTGDEFWQKMMDFAINHVLRELKHHARIPVPNAWN 792
Query: 636 LMGTVDPTGILKSNEV--CIILKDGQVSW---EKVLVYRNPGLHFGDIHV 680
L+G D G L+ +EV CI DG LV R+P +H GD+ V
Sbjct: 793 LVGVADVHGYLEQDEVFGCIYPLDGTGPIYLDGPTLVTRSPTIHPGDVQV 842
>gi|290989465|ref|XP_002677358.1| predicted protein [Naegleria gruberi]
gi|284090965|gb|EFC44614.1| predicted protein [Naegleria gruberi]
Length = 913
Score = 77.0 bits (188), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 99/406 (24%), Positives = 169/406 (41%), Gaps = 74/406 (18%)
Query: 506 MIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALD 565
++ K+ D ++ + E+V S +P+ + L+R +I LLS G+P+ + + ++
Sbjct: 529 LVLTKSQNKFKDEKS-DEFEMVAFSKRPKFSSLNRQIIILLSSNGLPDSALMKFVDREIE 587
Query: 566 DARGVFSNK---RNAL-KVSFNYGGMD--------YDFTSARMILS---GISLD------ 604
R + K R L KV N G + Y A+++ S G+S
Sbjct: 588 TWRSRTTKKLSIRKLLRKVWENVVGSNIKKVISSEYLDLKAQVLASQVKGMSQQHVEYFY 647
Query: 605 --EPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILK------ 656
+P L ++ + SL+ LPV + LMG VD G+L+ +EV + L
Sbjct: 648 NVDPLLCTLCDKILINQFSSLKTN-LPVDKCSLLMGVVDFYGVLEDDEVFVQLSSFESYE 706
Query: 657 ----------DGQVSWEKVLVYRNPGLHFGDIHVLKAT------YVKELEDFVGTSKYAI 700
+G + V V RNP LH GD+ KA +K L+D I
Sbjct: 707 RDLYDPGSYAEGGIVSGNVFVTRNPCLHPGDVRKFKAVSDDRINVLKHLKD-------VI 759
Query: 701 FFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSL 760
F +S A +++GGD DGD++ V +PELL + + K L N
Sbjct: 760 VFSQKSKQSQASKMSGGDLDGDLFMVCWDPELLNFTEHKPMKHTQLKPLEKN-------- 811
Query: 761 EELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINI 820
+ + + + FL N +A F+ + K A+ +N L L +
Sbjct: 812 DGFDYKAIRDFLKEYVVNDNLGVVA----------FMHMEHYDQSSKGALDQNCLDLADY 861
Query: 821 YYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRD-ESVSFESTSVLG 865
+ +D K+G++ +P +L E P YM + ++ ST ++G
Sbjct: 862 HSHQVDYA-KTGVRKALPMELVSEYRPHYMPKSFMKKTYHSTKIIG 906
>gi|113205257|gb|AAT38687.2| RNA-directed RNA polymerase, putative [Solanum demissum]
Length = 1139
Score = 76.6 bits (187), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 162/731 (22%), Positives = 274/731 (37%), Gaps = 169/731 (23%)
Query: 209 QEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGD-DNILLVKF-DE 266
Q + S+ D G ++ + T F GP +N + L+ D DN L V F DE
Sbjct: 333 QPPKSPSITLDDGLVYVRRVLV-TPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDE 391
Query: 267 E--------LGGHRSSNNW--NDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDP 316
E L S+ N + Y + R+G ++G + + F F
Sbjct: 392 EWEKLYSTDLLPKASTGNGIRTNIYERILSTLRKGFVIGDKKFEFLAF------------ 439
Query: 317 STSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSK 376
S+S ++ V M +S G T ++ R + +VA Y +RL
Sbjct: 440 SSSQLRDNSVWMFASR----------PGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGS 489
Query: 377 TMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKE 436
+ K + R IE I D V G + + +DG G IS D A + +
Sbjct: 490 S-KETLSVLRHEIEVIPD----------VKVHGTSYVFSDGIGKISADFARRVAS----- 533
Query: 437 KCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLP 496
KC + P Q+R Y G KG + ++
Sbjct: 534 KCGLQYT---------------------------PSAFQIR--YGG--YKGVVAVDP-YS 561
Query: 497 PQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSN-QPRKTYLSRNLIALLSYGGVPEIF 555
+ +R SM K ++D N L+V+ S QP YL+R L+ LLS GV +
Sbjct: 562 SMKLSLRKSMSKYESDN--------NKLDVLGWSKYQP--CYLNRQLVTLLSTLGVKDDV 611
Query: 556 FLDILRNALDDARGVFSNKRNALK-VSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSI 614
+ A+D + + A + + G + A + + EP+L L
Sbjct: 612 LEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTTILKAMLNCGYMPDAEPFLSMMLQT 671
Query: 615 LMKEEKKSLQA-GKLPVTESYYLMGTVDPTGILKSNEVCIILKD-GQVSWEK-------- 664
+ L+ ++ + +MG +D + L+ +V + G + +
Sbjct: 672 FRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNS 731
Query: 665 ------------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTS---------------- 696
V+V +NP LH GDI VL+A V L V
Sbjct: 732 RSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRLGMYFNCL 791
Query: 697 -------KYAIFFPCNGP------RSLADEIAGGDFDGDMYFVSRNPELL--KHFKESER 741
K A P + P R +E +G D DGD+YFV + +++ + + E
Sbjct: 792 PTSEVEVKSAYTLPSSDPTLCFDDRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPMEY 851
Query: 742 WMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGD 801
+ S L D ++EE+E E F T + +++ + A+ DR
Sbjct: 852 PPAPSIQLDH-----DVTIEEVE-EYF-----TNYIVNDSLGIIANAHVVFADR------ 894
Query: 802 ESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFEST 861
E AM + +L ++ A+D PK +G+ E+P L+ +++P +M + + ++ S
Sbjct: 895 ---EPDMAMSDPCKKLAELFSIAVDFPK-TGVPAEIPSQLRPKEYPDFMDKPDKTTYISE 950
Query: 862 SVLGTIYNTVK 872
V+G ++ VK
Sbjct: 951 RVIGKLFRKVK 961
>gi|154272513|ref|XP_001537109.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409096|gb|EDN04552.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1209
Score = 76.6 bits (187), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 128/272 (47%), Gaps = 25/272 (9%)
Query: 477 RLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKT 536
R+F +G KG + L+ + +++ +RPSMIK L + ++E+ + +P
Sbjct: 581 RVFSDGVGAKGMISLDSRKKGKSLVLRPSMIKFH----LPNSYNAFNIEICGSGLKPLPF 636
Query: 537 YLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYG-----GMDYDF 591
+L+ +I +L GV E FL + + + R ++ A + + G+ +
Sbjct: 637 FLNAQMIKILEDLGVDESVFLRLQADEISRLRATATSTAKAARFLEDTNIAKSVGLPWLI 696
Query: 592 TSARMILSGISL---DEPYLQH--RLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGIL 646
+L G L ++ +L+ LS+L+K +A ++ V + L G +D TGIL
Sbjct: 697 N----VLEGFGLRHSNDEFLRRVMELSVLIKLRDLKYRA-RIRVPNAVTLFGIMDETGIL 751
Query: 647 KSNEV-CIILKDGQVSW----EKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIF 701
K EV C L D V +V+V R+P +H GD+ + +A V + + I
Sbjct: 752 KEGEVFCTSLSDKGVREVLVNPRVVVTRSPAMHPGDVQIARAVDVPA-DSPLRQLHNCIA 810
Query: 702 FPCNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
F +G R L ++GGD DGD+Y V + LL
Sbjct: 811 FSQHGHRDLPSMLSGGDLDGDLYNVIFDNTLL 842
>gi|388857678|emb|CCF48827.1| related to RNA-dependent RNA polymerase [Ustilago hordei]
Length = 1462
Score = 76.3 bits (186), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 97/394 (24%), Positives = 169/394 (42%), Gaps = 54/394 (13%)
Query: 362 SVANYMSRLSLILSK-------TMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIH 414
V Y +RL LS+ T+K+ D+ +I + + C ++ + +
Sbjct: 582 GVDRYPARLGARLSQAFSATSSTIKINDDWVKIVTD--DHSNCAMPSNGPNEREKQFYLL 639
Query: 415 TDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLM 474
TDG G IS +L +++E C+ + +E + + D R P +
Sbjct: 640 TDGVGEISRELR----DDIWRELCSAKNML------REWQLSQQDARRI-------PSAI 682
Query: 475 QVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPR 534
Q R Y G KG L LN +L + +++R SMIK A + LEV TS P
Sbjct: 683 QFR--YGG--AKGVLCLNPQLRGKVMKVRHSMIKFSAPK-------HRDLEVATTSFHPL 731
Query: 535 KTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYD---- 590
L+R LI L GVP F+ + A++ A+ + ++A ++ ++ D
Sbjct: 732 PARLNRPLINALEDLGVPADVFVSLQNKAVESAQLARKDFKHASQLMRSFALSDTAEVHK 791
Query: 591 -FTSARMILSGISLD----EPYLQHRLSILMKEEKKSLQ-AGKLPVTESYYLMGTVDPTG 644
F IL GI+ D + L +I++ L+ ++PV + L+G VD
Sbjct: 792 LFHRLDSIL-GITPDNLHHDSILNRLCTIVIAAALGDLKRKARIPV-DGCTLIGVVDEFN 849
Query: 645 ILKSNEVCIIL---KDGQ--VSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYA 699
L NE+ + + +DGQ + +V++ R+P +H GD+ ++ A
Sbjct: 850 YLGKNEIFVQVNDKEDGQYRIIEGRVMIGRSPTIHPGDVRIVTAVKPPPTHPLRQLRNVV 909
Query: 700 IFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
+F R L ++G DFDGD++ + + +L
Sbjct: 910 VFNKHPHGRPLQSMLSGADFDGDIFTIYEDEQLF 943
>gi|170582151|ref|XP_001896001.1| RNA dependent RNA polymerase family protein [Brugia malayi]
gi|158596891|gb|EDP35156.1| RNA dependent RNA polymerase family protein [Brugia malayi]
Length = 1475
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 125/558 (22%), Positives = 217/558 (38%), Gaps = 96/558 (17%)
Query: 361 SSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGF 420
+++ MSR+ +++ + +V R + D KD GE I +DG G
Sbjct: 585 TNIPKLMSRMGQCFTQSKETDVTLKRRKYNKTHD-VIGGKDSC-----GEPFIFSDGVGK 638
Query: 421 ISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFY 480
+SED A + + KC R + L+ S P L Q RL+
Sbjct: 639 LSEDFAEQIANDLGLAKCVPSCFQFRY---RGLKGVLS----------VDPALRQRRLWA 685
Query: 481 NGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSR 540
++ K+ I RPS K A R +E+VK S+ P YL+R
Sbjct: 686 ERNGLEDKHAKTAKVNDLDIIFRPSQDKFHAPRK-------EIIEIVKYSS-PTSVYLNR 737
Query: 541 NLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARM---- 596
LI +L V ++ D+ ++ G+ R LK+S M D R+
Sbjct: 738 PLINILD--QVSDMQGFDVHSRIVNRIHGLLD--RQLLKLS--DALMSEDRCRERLAEFP 791
Query: 597 ---------ILSGISLDEPYLQHRLSI----LMKEEKKSLQAGKLPVTESYYLMGTVDPT 643
+ G +L + H L I +++ S + ++P + G +D T
Sbjct: 792 RRINVQYLSVARGFTLTQEPFFHGLLIASVRFTLQKQLSKEHIQIPANLGRTMFGILDET 851
Query: 644 GILKSNEVCI------ILKDGQVSWEK------VLVYRNPGLHFGDIHVLKATYVKELED 691
G+L+ +V + LK + K VL+ +NP + GD+ + +A + EL
Sbjct: 852 GLLQYGQVFVQFTNDVFLKTPPKAAAKTIVKGFVLITKNPSIVAGDVRIFEAVDLPELRH 911
Query: 692 FVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNL-- 749
V + FP +GPR DE+AG D DGD Y V + ++L F +E M SK +
Sbjct: 912 LVD----VVVFPQHGPRPHTDEMAGSDLDGDEYSVIWDDQML--FSHNEEPMDFSKLIRP 965
Query: 750 -------SANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRF---LTL 799
+ + F +E + + + N S+ +A+D ++ ++ +
Sbjct: 966 PDILKEDEVVREMRRFYVEYVMQDSIGIIANAFLVNSDTFGIASDVCMSIAEKHSQSVDF 1025
Query: 800 GDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFE 859
K +KE + P I E P E++P +M + S+
Sbjct: 1026 PKTGQPPKPLVKE-----------WSNGPDGKMIPPERP-----ERWPDFMCKTHEPSYV 1069
Query: 860 STSVLGTIYNTVKSYEAV 877
ST ++G ++ ++ + V
Sbjct: 1070 STRLVGQLFRRIRLIDDV 1087
>gi|389743114|gb|EIM84299.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1120
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 112/245 (45%), Gaps = 23/245 (9%)
Query: 500 IQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDI 559
I +RPSM K DG+ SLE+ S+ L++ I LL G+P ++
Sbjct: 246 IAVRPSMKKY-------DGR-LTSLEINAVSHPAGSARLNKMYILLLLTAGIPAATIHEL 297
Query: 560 LRNALDDARGVFSNKRNALKV-------SFNYGGMDYDFTSARMILSGISLDEPYLQHRL 612
L L+ +++ A+++ + G ++ +L+ L EPY++ +
Sbjct: 298 LNEQLEKLDLFMTDRDKAIEILEGTDSAQLDADGEGFNQELFEGLLASHDLSEPYVKWLM 357
Query: 613 SILMKEEKKSLQAGK-LPVTESYYLMGTVDPTGILKSNEVCIIL--KDGQV-SWEKVLVY 668
K + L+ + V S+ L G VD + LK +EV I + +DG + W V+V
Sbjct: 358 LKYQKLRYRRLREKICIDVKLSWLLFGIVDESRTLKPDEVYIHMPHRDGVIIGW--VVVC 415
Query: 669 RNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSR 728
R P GD+ V KA EL ++ C PRS+ D I+GGD DGD ++V
Sbjct: 416 RTPAYAPGDMRVFKAVSKPELLHHTNCIVFSGHESC--PRSVTDMISGGDLDGDKFWVCS 473
Query: 729 NPELL 733
+P L+
Sbjct: 474 DPRLV 478
>gi|452978294|gb|EME78058.1| hypothetical protein MYCFIDRAFT_145022 [Pseudocercospora fijiensis
CIRAD86]
Length = 1703
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 82/292 (28%), Positives = 128/292 (43%), Gaps = 60/292 (20%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQT-IQIRPSMIKVKADRDLSDGQTFNSLEVVKT 529
P ++Q+R Y G KG L+++ L QT + R SM K+K +DLS VV+
Sbjct: 233 PSVLQIR--YRG--YKGVLMIDPTLTGQTQVLFRKSMKKLKDVKDLS-------FSVVEH 281
Query: 530 SNQPRKTYLSRNLIALLSYGGVPE----------IFFLDILRNALDDARGVFSNKRNALK 579
S +L+ ++ LL+ GV + FLD N A F + +N L
Sbjct: 282 SKPYTFGFLNDEIVVLLNALGVSTDTILSKQTEYLQFLDEAYNGEPRAAFRFLSYQNELD 341
Query: 580 VSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSL------QAGKLPVTES 633
++ ++++ G+ ++ L L+K E + Q ++ +T+S
Sbjct: 342 LA------------EKLLIEGVH----SVRKSLRSLVKTEYSRMLNKYEEQRCRIMLTQS 385
Query: 634 YYLMGTVDPTG-------ILKSNEVCIILKDGQ-----VSWEKVLVYRNPGLHFGDIHVL 681
L G DPTG + I DG + +VLV RNP LH GD+
Sbjct: 386 RLLFGVCDPTGRDGGMSRLPPGTCFVRITLDGDGEPRTLINTEVLVTRNPCLHPGDLQKF 445
Query: 682 KATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
+A V E V I FP G R AD ++GGD DGD +FV+ +P+++
Sbjct: 446 RAVDVPEFSHLVD----CIVFPIRGSRPSADLMSGGDLDGDKFFVTWDPDII 493
>gi|325095101|gb|EGC48411.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus H88]
Length = 1209
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 128/272 (47%), Gaps = 25/272 (9%)
Query: 477 RLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKT 536
R+F +G KG + L+ + +++ +RPSMIK L + ++E+ + +P
Sbjct: 581 RVFSDGVGAKGMISLDSRKKGKSLVLRPSMIKFH----LPNSYNAFNIEICGSGLKPLPF 636
Query: 537 YLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYG-----GMDYDF 591
+L+ LI +L GV + FL + + + R ++ A + + G+ +
Sbjct: 637 FLNAQLIKILEDLGVDDSVFLRLQADEISRLRATATSTAKAARFLEDTNIAKSVGLPWLI 696
Query: 592 TSARMILSGISL---DEPYLQH--RLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGIL 646
IL G L ++ +L+ L++L+K +A ++ V + L G +D TGIL
Sbjct: 697 N----ILEGFGLRHSNDEFLRRVMELAVLIKLRDLKYRA-RIRVPNAVTLFGIMDETGIL 751
Query: 647 KSNEV-CIILKDGQVSW----EKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIF 701
K EV C L D V +V+V R+P +H GD+ + +A V + + I
Sbjct: 752 KEGEVFCTSLSDKGVREVLVNPRVVVTRSPAMHPGDVQIARAVDVPA-DSPLRQLHNCIA 810
Query: 702 FPCNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
F +G R L ++GGD DGD+Y V + LL
Sbjct: 811 FSQHGHRDLPSMLSGGDLDGDLYNVIFDNTLL 842
>gi|389748392|gb|EIM89569.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1274
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 132/568 (23%), Positives = 223/568 (39%), Gaps = 113/568 (19%)
Query: 210 EDRRMSL-KWDSGKTHMYHCHIS-TKGNCTFKGPYLNQTRTHLQRELGDDNILLVKF--- 264
+D RM L K D ++ HI+ T +GPY Q ++ D+ L+ F
Sbjct: 407 KDERMRLRKMDLPDSYFMCHHITITPTRMLLEGPYPTQNNRVIRGYQEYDSTLVGNFVRV 466
Query: 265 ---DEELGGHRSSNNWNDSY---SKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPST 318
DE+ +R + + Y + + + G +G R + FF + + +
Sbjct: 467 DFRDEDRFQYRFNRAVDGGYLLEKRVLDFLKPGFSLGGRHFDFFAYSSSSLRDSHALWAI 526
Query: 319 SPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMH-VRTVSSVANYMSRLSLILSKT 377
P + V + +S I G H M H + S+V N S+L+ + +T
Sbjct: 527 HP---FDVPVGASPTILCG----------HITADMIRHSLGNFSTVINQPSKLAARVGQT 573
Query: 378 MKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALI-HTDGTGFISEDLALKCPTYVYKE 436
R+ E+ +D+ + GE+ HTDG G IS DL
Sbjct: 574 CSATTPSVRLKREQWDDD---------MVDLGESPYEHTDGVGTISSDL----------- 613
Query: 437 KCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLP 496
R E+ A + P Q+R KG ++++ L
Sbjct: 614 -------------RDEIWATLCSKGWDKDKDRAKPDAFQIRFL----GFKGVVVVDYCLT 656
Query: 497 PQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFF 556
+++RPSM K D + + +F E+V+ ++P + L+R+ I +L GVP F
Sbjct: 657 GIRMRLRPSMKKFDVDEEEKNNASF---EIVRAFDRPNRYSLNRSTIMVLEDRGVPIDTF 713
Query: 557 LDILRNALDDARGVFSNKRN-ALKVSF---NYGGMDYDFTSARMILSGI----------- 601
+ + A + +F+ + A V+F N G+ +D +IL +
Sbjct: 714 MKLQEKAKET---IFTAGDSIASFVAFLRINRLGIGFDLP---LILERLAVLKDSSHKNV 767
Query: 602 --SLDEPYLQHRLSILMKEEKKSLQ-AGKLPVTESYYLMGT-----------VDPTGI-- 645
S + P+L+ L M + L+ ++PV + L+G +DP+ +
Sbjct: 768 VRSFENPFLERVLRFAMNSRLRDLKHKAQIPVPGGFKLVGVADEGQAYIQEGLDPSSVAT 827
Query: 646 LKSNEVCIILKDGQVSWEKVL-----VYRNPGLHFGDIHVLKATYVKELED----FVGTS 696
LK E+ ++DG + K L + R+P GDI ++A K ED F G
Sbjct: 828 LKEGEIYACVRDGHKAEPKFLKGDCFITRSPVNDPGDIQRVRAIG-KPPEDKVCFFRGLQ 886
Query: 697 KYAIFFPCNGPRSLADEIAGGDFDGDMY 724
+ G RSLA + GGD DGDM+
Sbjct: 887 NVVVLPAVPGTRSLASCLGGGDVDGDMF 914
>gi|290993091|ref|XP_002679167.1| RNA dependent RNA polymerase [Naegleria gruberi]
gi|284092782|gb|EFC46423.1| RNA dependent RNA polymerase [Naegleria gruberi]
Length = 1235
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 109/459 (23%), Positives = 191/459 (41%), Gaps = 68/459 (14%)
Query: 415 TDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEP---P 471
TDG GFIS D+A K VYK ++ D++E E + D R + + P
Sbjct: 352 TDGCGFISPDMAKK----VYKHILNAENRVLIKTDQEEDEIGY-DEQRGFDLFSDSSYIP 406
Query: 472 LLMQVRLFYNGTAVKGTLLLNKKLPPQ---TIQIRPSMIKVKADRDLSDGQTFNSLEVVK 528
Q+R KG L++N + + I +R SM+K K + + Q+F++L++V
Sbjct: 407 SAFQIRF----RGAKGMLVVNTETFEKYRVHIVLRESMVKCKTNEKVD--QSFSTLQIVG 460
Query: 529 TSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMD 588
S+ T ++ ++ LLS ++ + L+ A N + Y D
Sbjct: 461 HSSPCELTRVNSTIMHLLSGCDSNG----EVRKRVLEMASAHVQNSLDK------YVHED 510
Query: 589 YDFTSARMI----LSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTG 644
+ + + + L +++ + L K + + K+P + S L G VDP
Sbjct: 511 TEVIARQYMKDNNLISLNVLSTTKNKGFAFLAGPYKSLITSLKIPFSNSRRLYGVVDPYE 570
Query: 645 ILKSNEVCIILKD------GQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKY 698
+L EV + + QV +++++ + P LH GD+ +KA Y +L
Sbjct: 571 VLNEGEVFVQISSFKNPSHKQVLQKEIVLTKEPCLHRGDLRKIKAVYYPKLSHLCD---- 626
Query: 699 AIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDF 758
I F G R + + I+G D DGD +FV + ++ + K E + ++ +
Sbjct: 627 VIVFSSKGKRPVPNMISGSDLDGDQFFVCWDDLIVDNVKIFEPGL-------FDEEIKQE 679
Query: 759 SLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLI 818
+ E ++FK ++ R A +D G ++ KE M RL
Sbjct: 680 DIRPFEPDVFKDWVGVR--------------HAYVDHH---GSNWTNDENWNKE-MRRLC 721
Query: 819 NIYYDALDAPKKSGIKVEV-PEDLK-VEKFPCYMRRDES 855
I A+ +PK I V EDL+ ++ FP Y +S
Sbjct: 722 EIVNHAVGSPKNGVISVATREEDLRFIDNFPGYPHYHQS 760
>gi|315045169|ref|XP_003171960.1| RNA-dependent RNA polymerase 1 [Arthroderma gypseum CBS 118893]
gi|311344303|gb|EFR03506.1| RNA-dependent RNA polymerase 1 [Arthroderma gypseum CBS 118893]
Length = 1204
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 143/641 (22%), Positives = 258/641 (40%), Gaps = 125/641 (19%)
Query: 222 KTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGD--DNILLVKFDEELGG----HRSSN 275
K+ + H + T GPY +T+ + R+ D D + V+F +E G S+N
Sbjct: 414 KSVLVHRAMVTPCGIYLSGPY-TETKNRILRKYLDNIDYFIRVEFLDETGDPVFFDPSAN 472
Query: 276 NWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFID 335
+ + ++ + + GI + R + + F + C+F ++ F
Sbjct: 473 LESIFHQRFAGVMKRGIEIAGRVFEYLGFSHSSLRSQT---------CWF----AAPFTT 519
Query: 336 MGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDE 395
Y L KT+ F H+R+ S A +R+ S T+ + I++ + E
Sbjct: 520 ANGDY-LDAKTIIGNIGHFDHIRSPSKQA---ARIGQAFSDTL------TSISVSK---E 566
Query: 396 PCRDKDGNVVYKDGEALIHTDGTGFISEDLALKC-PTYVYKEKCTNDDSTERSIDRKELE 454
+ K +V ++G + +DG G IS +L + Y +E+
Sbjct: 567 VVKMKAPDV-KRNGR--VFSDGVGVISRELMYRIWNEYALRERVK--------------- 608
Query: 455 ANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRD 514
P + Q+R+ KG + L+ + + + +R SM+K D D
Sbjct: 609 ----------------PTVFQIRI----AGAKGMVSLDTRKKGEFLMLRESMVKFPTD-D 647
Query: 515 LSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSN- 573
L + +E+ + YL+ +I +L GVP F + ++ + FS+
Sbjct: 648 LYN------IEICGAGIRALPFYLNNQIIKILEDLGVPFEAFHQLQQDEISFLYSTFSSI 701
Query: 574 --KRNALKVSFNYGGMDYDFTSARMILSGISLDE-PYLQHRLSILMKEEKKSLQ-AGKLP 629
N L+ S + + + GI + P+LQ + + M + L+ ++
Sbjct: 702 ERAANFLEESPVPRSLRLPWLLLVLKSLGIRYSQDPFLQRVMELTMLLRLRDLKYRARIR 761
Query: 630 VTESYYLMGTVDPTGILKSNEV-CIILKDGQ----VSWEKVLVYRNPGLHFGDIHVLKAT 684
V + L G +D TG LK NE+ C+ L + + + V++ R+P LH GD+ V A
Sbjct: 762 VPNAVTLYGIMDETGYLKENEIYCVYLAENGRREILVRDNVVITRSPALHPGDVQVANAV 821
Query: 685 YV------KELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL--KHF 736
V ++L + V S++ G R L ++GGD DGD+Y + + LL K F
Sbjct: 822 DVPANSPLRKLHNCVAFSQF-------GTRDLPSMLSGGDLDGDLYNIIYDTRLLPQKTF 874
Query: 737 KESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRF 796
++ + +K L ++E+E F T F + A QA+ D+
Sbjct: 875 SPADYPRAEAKELD----------RKVETEDIIDFFVT-FMQQDQLGRIAITHQAIADQ- 922
Query: 797 LTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEV 837
E+ + L L ++ A+D KSGI V+V
Sbjct: 923 --------SERGTLDGVCLTLARLHSTAVDY-SKSGIAVDV 954
>gi|299752904|ref|XP_001832921.2| RNA-dependent RNA polymerase [Coprinopsis cinerea okayama7#130]
gi|298410053|gb|EAU88888.2| RNA-dependent RNA polymerase [Coprinopsis cinerea okayama7#130]
Length = 1251
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 133/652 (20%), Positives = 252/652 (38%), Gaps = 127/652 (19%)
Query: 229 HISTKGNCTF-KGPYLNQTRTHLQR--ELGDDNILLVKF-DEELGGHRSSNNWNDS---- 280
H++ F +GPY Q+ ++ + L V F DE +RSS+ D
Sbjct: 436 HVTVTPTAIFLEGPYPEQSNRVIRAYDPQHHSSFLRVTFADEGRLQYRSSDRQVDHKAFV 495
Query: 281 YSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQY 340
+++ +I G+ + R + F + +E +FV+ I+ G++
Sbjct: 496 RARFGDILLNGLEIAGRRFEFLAYSMSALKEHS---------VWFVK--PFDVIENGHRV 544
Query: 341 ILSGKTVHEARYMF----MHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEP 396
++ ++ ++ F R + A Y +R+S + T ++ + I I+D
Sbjct: 545 TVTADSIIQSLGTFDGLDFEPRLMHCPARYAARISQAFTATDLCTIEVQDLEITVIDD-- 602
Query: 397 CRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEAN 456
V G HTDG G +S + + K K
Sbjct: 603 ------IEVTSGGHKWTHTDGVGTMSPMASRAIWKALPKRK------------------- 637
Query: 457 FSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLS 516
G P QVR+ KG L ++ L I +RPSM+K +A
Sbjct: 638 -----------GPAPAADQVRI----GGAKGMLSVDYTLTGHKICLRPSMVKFEA----- 677
Query: 517 DGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRN 576
T +E+ + ++P YL+R LI +L GVP F A+ + R S+ R
Sbjct: 678 --PTRKYIEIARAFDRPTPYYLNRPLIMILEGLGVPYSTFEHFQDRAVRETRQAASSLRR 735
Query: 577 ALKVSFNYG-GMDYDFTSA-----RMILSGISLDEPY---LQHRLSILMKEEKKSLQAGK 627
A + +YG G + +S R+ + ++ D+ Y ++ ++ ++++ K +
Sbjct: 736 AASMLDSYGLGSSFRLSSVMNSLDRLGIRHLNPDKFYSKAMEFAINHVLRDLKNH---AR 792
Query: 628 LPVTESYYLMGTVDPTGILKSNEVCIILK----DGQVSWEKVLVYRNPGLHFGDIHVLKA 683
+P+ ++ L+G D L+ E+ +K G +L+ R+P +H GD+ + +A
Sbjct: 793 IPIPGAWTLVGVADVHRFLQPGEIFAYVKPTNEKGFYLEGDILISRSPCIHPGDVRITRA 852
Query: 684 TYVK------ELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFV----------- 726
E E T + + C G GGD DGD Y +
Sbjct: 853 IGPPPPGSPFEREPLANTVVFNVLASCLG---------GGDLDGDTYNLLPLSDPALQGF 903
Query: 727 --SRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSL 784
+R PE ++ +R++ + + + +F LE + S++ + N + +
Sbjct: 904 RPTRIPEPSQYAPAEKRYLEEKSTM---RDVAEFVLEYILSDVLGM------VSINWRII 954
Query: 785 AADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVE 836
A A + + T + + + + L +++ A+D P KSG V+
Sbjct: 955 ADQSRHAYLATYPT-ANGDPDSTGIFDSDCMLLADLHSAAVDYP-KSGTPVD 1004
>gi|326484092|gb|EGE08102.1| RNA-dependent RNA polymerase [Trichophyton equinum CBS 127.97]
Length = 1207
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 121/529 (22%), Positives = 213/529 (40%), Gaps = 94/529 (17%)
Query: 217 KWDSGKTH----MYHCHISTKGNCTFKGPYLNQTRTHLQRELGD--DNILLVKFDEELGG 270
+WD H + H T GPY +T+ + R+ D D + V+F +E G
Sbjct: 405 EWDINLMHEKNVLVHRATVTPAGIYLSGPY-AETKNRILRKYLDNIDYFIRVEFLDETGD 463
Query: 271 ----HRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFV 326
S+N + ++ + + G + R + F F S C+F
Sbjct: 464 PVFFDPSANLEQIFHQRFAGVMKRGFEIAGREFEFLGFSHS---------SLRAQTCWFA 514
Query: 327 RMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSR 386
++A D L+ +T+ F H+R+ S A +R+ S T+ +
Sbjct: 515 APFTTANGDH-----LNARTIIGNIGYFDHIRSPSKQA---ARIGQAFSDTL------TS 560
Query: 387 INIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKC-PTYVYKEKCTNDDSTE 445
I++ + E K +V D I +DG G IS DL + Y +E+
Sbjct: 561 ISVSK---EVVWMKAPDVKRNDR---IFSDGVGVISRDLMYRIWNEYALRERVK------ 608
Query: 446 RSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPS 505
P + Q+R+ KG + L+ + + + +R S
Sbjct: 609 -------------------------PTVFQIRI----AGAKGMVSLDTRRKGEFLMLRES 639
Query: 506 MIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALD 565
M+K D DL + +E+ + YL+ +I +L GVP F I ++ ++
Sbjct: 640 MVKFPTD-DLYN------IEICGAGIRALPFYLNNQIIKILEDLGVPFEAFHQIQQDEIN 692
Query: 566 DARGVF-SNKRNALKVSFNYGGMDYDFTSARMILSGISL---DEPYLQHRLSILMKEEKK 621
F S +R A + + ++L G+ + +P+L+ + + +
Sbjct: 693 FLYSTFNSTERAAKFLEDSPVPRSLRLPWLFLVLKGLGIRYTQDPFLKRVMELTTLLRLR 752
Query: 622 SLQ-AGKLPVTESYYLMGTVDPTGILKSNEV-CIIL-KDGQ---VSWEKVLVYRNPGLHF 675
L+ ++ V + L G +D TG LK NE+ C+ L ++G+ + +KV++ R+P LH
Sbjct: 753 DLKYRARIRVPNAVTLYGIMDETGYLKENEIYCVYLGENGRREILVRDKVVITRSPALHP 812
Query: 676 GDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMY 724
GDI V+ A V E + F +G R L ++GGD DGD+Y
Sbjct: 813 GDIQVVNAVDVPENSPLRKLHN-CVAFSQHGDRDLPSMLSGGDLDGDLY 860
>gi|170094614|ref|XP_001878528.1| RNA-directed RNA polymerase [Laccaria bicolor S238N-H82]
gi|164646982|gb|EDR11227.1| RNA-directed RNA polymerase [Laccaria bicolor S238N-H82]
Length = 1051
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 124/553 (22%), Positives = 229/553 (41%), Gaps = 112/553 (20%)
Query: 228 CHIS-TKGNCTFKGPYLNQTRTHLQRELG-DDNILLVKF-DEELGGHRSSNNWNDS---Y 281
H++ T +GP Q+ +++ G DDN + V F DE+ ++ + + +D
Sbjct: 215 AHVTITPTRMLLEGPLPTQSNNAIRKYKGCDDNFIRVDFRDEDRSSYKRNQDVDDMSVLR 274
Query: 282 SKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYI 341
+ ++ ++GI++ R + F + STS ++ + V SS + G + I
Sbjct: 275 ERVGDVLKQGIMIAGRHFQFLAY------------STSSLREHAVWFMSS--FESGGEMI 320
Query: 342 LSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKT-MKLEV---DFSRIN-IERIEDEP 396
K V R + + Y +R++ S T + + ++ R++ IE IE+
Sbjct: 321 TPQKVV---RDLGDFSALAQQPSKYAARIAQKFSATDPSVHIHGHEWERVDDIEYIEERT 377
Query: 397 CRDKDGNVVYKDGEALIH--TDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELE 454
R+ DG++ + +H TDG G ISE L + +++ N E
Sbjct: 378 IRNDDGDI---ETRKTVHCFTDGVGTISESLGQE----IFETLRNN-------------E 417
Query: 455 ANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQT----IQIRPSMIKVK 510
+ A S Y Q+R KG ++++K+L + +++RPSMIK
Sbjct: 418 GRLEEKAPLPSAY-------QIRFM----GSKGVVVVDKQLDKNSSGIRMRLRPSMIKFP 466
Query: 511 ADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDA--- 567
+ L+ + LE+ + P+ YL+R L+ L GV FLD+ A+ +A
Sbjct: 467 S---LAQSE---PLEISEAFRYPKLCYLNRPLVMFLEDLGVRLQTFLDLQNAAIAEAQTI 520
Query: 568 -------RGVFSNKRNALKVSFNYGGMDYDFTSARMILSG----ISLDEPYLQHRLSILM 616
R + R L SF++ + F L +D +++ ++
Sbjct: 521 DDSLEQFRSIMETHRGGLGKSFDFPDILKHFEDDGFDLHSQDGRPGIDNQFIKQLRNVAR 580
Query: 617 KEEKKSLQ-AGKLPVTESYYLMGTVD----------------PTGILKSNEVCII-LKDG 658
E + ++ + ++ + +SY L+G D P G + + C+ D
Sbjct: 581 IEVLREIKHSARIKIPDSYLLVGVADEGPAYRKDGYQNVYELPEGHIYA---CVQKAGDK 637
Query: 659 QVSW--EKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKY---AIFFPCNGPRSLADE 713
+ +W + R+P H GD+ ++ K ED + + + P G RSLA
Sbjct: 638 EPTWLSGSCSISRSPVAHPGDVQRVRCIG-KPPEDKLCLFSHLVNVVVLPSVGKRSLASC 696
Query: 714 IAGGDFDGDMYFV 726
+ GGD DGD+Y V
Sbjct: 697 LGGGDLDGDIYSV 709
>gi|296810484|ref|XP_002845580.1| RNA-dependent RNA polymerase [Arthroderma otae CBS 113480]
gi|238842968|gb|EEQ32630.1| RNA-dependent RNA polymerase [Arthroderma otae CBS 113480]
Length = 1152
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 148/641 (23%), Positives = 261/641 (40%), Gaps = 131/641 (20%)
Query: 225 MYHCHISTKGNCTFKGPYLNQTRTHLQRELGD-DNILLVKFDEELGG----HRSSNNWND 279
+ H + T GPY L++ LG+ D L V+F +E G ++N
Sbjct: 364 LVHRAMVTPCGIYLLGPYAEVKNRILRKYLGNTDYFLRVEFLDENGDPVFFDPNANLEKI 423
Query: 280 SYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQ 339
+ +++ + + GI V R ++F F + C+F ++ F +
Sbjct: 424 FHERFSGVMKRGIEVAGRNFNFLGFSHSSLRSQT---------CWF----AAPFTTPDGE 470
Query: 340 YILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIE-RIEDEPCR 398
Y L +T+ + F H+R+ S A +R+ S T+ + S+ + R+ D
Sbjct: 471 Y-LDARTIINSIGHFDHIRSPSKQA---ARIGQAFSDTLT-SISVSKEAVRLRVPD---- 521
Query: 399 DKDGNVVYKDGEALIHTDGTGFISEDLALKC-PTYVYKEKCTNDDSTERSIDRKELEANF 457
V ++G I +DG G IS +L K Y +EK
Sbjct: 522 ------VERNGR--IFSDGVGVISRELMYKIWNEYALREKVK------------------ 555
Query: 458 SDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSD 517
P + Q+R+ KG + L+ + + +R SM+K D
Sbjct: 556 -------------PTVFQIRI----AGAKGMVSLDTSRQGEFLMLRESMVKFPTD----- 593
Query: 518 GQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNA 577
++N +E+ + YL+ +I +L GVP F + ++ + F++ A
Sbjct: 594 -DSYN-IEICGAGIKALPFYLNSQIIKILEDLGVPFAAFHQLQQDEILSLYSTFNSTEQA 651
Query: 578 LKVSFNY-----GGMDYDFTSARMILSGISLDEPYLQHR---LSILMKEEKKSLQAGKLP 629
K + + + + + +LD P+L HR L+ L+K +A ++
Sbjct: 652 AKFLEDSPVPRSLRLPWLLLVLKGLGLRYTLD-PFL-HRIMELTTLLKLRDLKYRA-RIR 708
Query: 630 VTESYYLMGTVDPTGILKSNEV-CIIL-KDGQ---VSWEKVLVYRNPGLHFGDIHVLKAT 684
V + L G +D TG LK NE+ C+ L +DG+ + + V+V R+P LH GD+ V+ A
Sbjct: 709 VPNAVTLYGIMDETGYLKENEIYCVFLSEDGRREILVRDNVVVTRSPALHPGDVQVVNAV 768
Query: 685 YV------KELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKH--F 736
V + L + V S++ G R L ++GGD DGD+Y + + L+ F
Sbjct: 769 DVPANSPLRRLHNCVAFSQH-------GVRDLPSMLSGGDLDGDLYNIIYDTRLIPQQTF 821
Query: 737 KESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRF 796
++ + ++ L+ ++ES F T F + A QA+ D+
Sbjct: 822 PPADYPLVKTRELN----------RKVESNDIIDFFVT-FMQQDQLGRIATTHQAIADQ- 869
Query: 797 LTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEV 837
+LG E L+L +++ A+D KSGI V V
Sbjct: 870 SSLGTRD--------ETCLKLAHLHSVAVDY-SKSGIPVNV 901
>gi|290988454|ref|XP_002676936.1| predicted protein [Naegleria gruberi]
gi|284090541|gb|EFC44192.1| predicted protein [Naegleria gruberi]
Length = 1745
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 128/499 (25%), Positives = 211/499 (42%), Gaps = 80/499 (16%)
Query: 413 IHTDGTGFISEDLAL----KCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYG 468
+ TDG GFIS DLA K +EK ++ + +D ++ + D E
Sbjct: 492 LFTDGCGFISPDLAREIYRKIKQAESREKVHVFENAQYMVD---VQMIYQDSDPVEDDMD 548
Query: 469 EP-PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFN---SL 524
+ P Q+R KG LL N + + I +R SM+K D D + ++
Sbjct: 549 DNVPSAFQIRF----RGAKGMLLQNPNV--KGIVLRESMVKFNVDLDEDLDEEDESLSNI 602
Query: 525 EVVKTSNQPRKTYLSRNLIALLSY----GGVPEIFFLDILRNALDDARGVFSNKRNA--L 578
VV S + + ++ ++S G E +++ ++ ++D +SN+ + +
Sbjct: 603 HVVGYSEPSNFAFANSTILYMMSGCVDGGEKFEGIIMNMWKDYVNDILKTYSNEDTSQLM 662
Query: 579 KVSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMG 638
K F G DF + + G++ D L+ L + L KLP+ + + G
Sbjct: 663 KKYFKEG----DFHALNIF--GLTKDVA-----LAFLAGPFRTQLLNLKLPIQNARRVYG 711
Query: 639 TVDPTGILKSNEVC--IILKDGQVSWEK--VLVYRNPGLHFGDIHVLKATYVKELEDFVG 694
DP +L+ +EV I ++DG + + + + + P LH GD+ +LKA ++ LE
Sbjct: 712 VCDPLEVLEPDEVFVRIRMEDGTLKTLEGTIAITKEPCLHRGDLRLLKAKKIESLEYL-- 769
Query: 695 TSKYAIFFPCNG-PRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANK 753
I FP G R + + I G D DGD Y V + L+ F + + + + K
Sbjct: 770 --SEVIVFPIKGEKRPIPNMITGSDLDGDKYLVIWDEPLVSSFVQQFEPGNFDEEIEGEK 827
Query: 754 RLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKEN 813
R E ++FK ++ R + +D + G E + K +
Sbjct: 828 R-------NFEPDVFKDWIGLR--------------HSYVDSY---GYEWS--KGENWKT 861
Query: 814 MLRLINIYYDALDAPKKS-GIKVEVPEDLKVEKFPCYMRRDESVSFE----STSVLGTIY 868
M RL +I A+DAPKK K E V FP Y S + E STSV+G +Y
Sbjct: 862 MQRLSDIVNMAVDAPKKGKTFKAGAMEKDIVRNFPKYPHFHNSKTKEAVRVSTSVVGKMY 921
Query: 869 NTVKSYEAVDRSVTEIWKL 887
+ A+DR VTE +K
Sbjct: 922 DF-----AIDR-VTERFKF 934
>gi|358393899|gb|EHK43300.1| hypothetical protein TRIATDRAFT_294361 [Trichoderma atroviride IMI
206040]
Length = 1759
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 120/273 (43%), Gaps = 28/273 (10%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQT--IQIRPSMIKVKADRDLSDGQTFNSLEVVK 528
P + Q+R Y G KG + L+ + +++R SM K DLS VV+
Sbjct: 244 PSVFQLR--YRG--YKGVVTLDPTMAKGGTWLKMRKSMKKFSGGDDLS-------FSVVE 292
Query: 529 TSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMD 588
S +L+ +I LL GV L + + + + R A +V + +D
Sbjct: 293 YSKPYVFGHLNDEVIVLLDALGVDRKILLRKQQEHFNFLAEAYQDPRAAFRVLCH---LD 349
Query: 589 YDFTSARMILSGISLDEPYLQHRLSILMKE--EKKSLQAGKLPVTESYYLMGTVDPTGIL 646
+ R+I+ + P + ++ + K+ Q ++ + +S L G D G+L
Sbjct: 350 RPDLAERVIIDSLDSVRPSINRLINAEYDKMLNKRDEQKCRILIPKSRLLFGVCDAWGVL 409
Query: 647 KSNEVCIILK---DG---QVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAI 700
K + + + DG + KVLV RNP LH GD+ L EL V I
Sbjct: 410 KPGQCAVKVTMDVDGLPYALKGTKVLVTRNPCLHPGDLQKLDVVERPELAHLVD----CI 465
Query: 701 FFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
FP G R AD ++GGD DGD +FV+ +P+++
Sbjct: 466 VFPTTGRRPAADMMSGGDLDGDTFFVTWDPDII 498
>gi|322701339|gb|EFY93089.1| suppressor of ascus dominance [Metarhizium acridum CQMa 102]
Length = 1296
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 150/669 (22%), Positives = 266/669 (39%), Gaps = 162/669 (24%)
Query: 248 THLQRELGDDNILLVKFDEE-----LGGHRSSNNWNDSYSKYNEIAREGILVGLRCYHFF 302
+H+Q D L V+F EE LG + +N + + +GI +G R Y F
Sbjct: 444 SHVQ-----DRFLRVQFVEESELVRLGKTKYNNV--KVWKRVERALSQGIRIGDRQYEFL 496
Query: 303 VFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSS 362
F G + + +SSA+ + LS + + F H++ V
Sbjct: 497 AF---GSSQLR---------------QSSAYFFCPTDH-LSCEDIRAWMGQFDHIKCV-- 535
Query: 363 VANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFIS 422
A Y +RL S T ++ + +I+ I+D + ++G+ TDG G IS
Sbjct: 536 -AKYAARLGQCFSTTRDIKGIWVP-DIKYIDD----------IQRNGQCF--TDGVGLIS 581
Query: 423 EDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNG 482
+ L+ + +E+ + D P Q R+
Sbjct: 582 KFLS--------------------QLIMEEMTLDIFD----------KPTAFQFRM---- 607
Query: 483 TAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNL 542
KG L + + + IR S K K++ F +LE+V+ + + T L+R
Sbjct: 608 GGCKGVLAVWPQAQGMEVHIRKSQEKFKSN--------FQALEIVRCAARSTAT-LNRQT 658
Query: 543 IALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTS---ARMILS 599
I +L GV + F+++L+ + + A+K+ + +D + +S A ++ +
Sbjct: 659 ITILESLGVRKKIFMELLKEQISWYENATKDTSEAIKLLTKF--VDENQSSLVLAELLKA 716
Query: 600 GISLDEPYLQHRLSI----------LMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSN 649
G D L+I L+KE+ + + V +S +++G VD +G L+ +
Sbjct: 717 GFKTDNIQESFTLNIFNLWLSWSFRLLKEKTR------IHVPKSAFVLGCVDESGSLRGH 770
Query: 650 EV---------------CIILKDGQVSWE--------KVLVYRNPGLHFGDIHVLKATYV 686
I L+ S E K +V RNP LH GDI V++A
Sbjct: 771 STETEGSSDQLNEKQLPQIFLQLTDPSHEGKTNTIQGKCIVGRNPSLHPGDIRVVQAVNN 830
Query: 687 KELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTS 746
+L K I FP G R + ++GGD DGD +F+ + L+ E W
Sbjct: 831 PKLRHL----KDVIVFPSKGDRPVPAMLSGGDLDGDDFFIIWDDRLI-----PEEWNHKP 881
Query: 747 KNLSA-NKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAE 805
+ A + R +D + +L + F+N + ++ L A A D + G +S
Sbjct: 882 MDYEAPSPRQLDRDV--TVDDLREFFVN--YMKNDNLGLIAVAHLAFADMY---GPKS-- 932
Query: 806 EKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLG 865
+ LRL ++ A+D K+G E ++ E++P +M + ++ S LG
Sbjct: 933 ------QICLRLAELHSQAVDY-AKTGEPAEFGYKMQPERWPHFMEKKS--TYRSKKALG 983
Query: 866 TIYNTVKSY 874
+Y+ V +
Sbjct: 984 ALYDEVAKH 992
>gi|290993029|ref|XP_002679136.1| predicted protein [Naegleria gruberi]
gi|284092751|gb|EFC46392.1| predicted protein [Naegleria gruberi]
Length = 464
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 98/384 (25%), Positives = 157/384 (40%), Gaps = 78/384 (20%)
Query: 524 LEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKV--- 580
E++ S + R L+R LIALLS V + FL +L L++ + +F++K+ +V
Sbjct: 120 FELITYSKRNRFASLNRQLIALLSSNKVSDSVFLQLLDRDLEEIKKLFNDKKYMRRVLRK 179
Query: 581 --------------SFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAG 626
S NY YDF+ +++ SG + Y + G
Sbjct: 180 SQDNIVGKNMKKVASLNYLDSQYDFS--KVVQSGEDIKFFY-------------QIEPNG 224
Query: 627 KLPVTESYYLMGTVDPTGILKSNEVCIILK----------------DGQVSWEKVLVYRN 670
++ + ++ LMG VD G+L+ +EV I L +G V + R+
Sbjct: 225 RIILDKALLLMGVVDFYGVLEEDEVFIQLSELENSDSDLYDDNCFVNGGTLSGTVAITRS 284
Query: 671 PGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNP 730
P LH GDI KA E + + I F G R A++++GGD+DGD + V +P
Sbjct: 285 PCLHPGDIRKFKAVTDPEKISKLSHLRDVIVFSQKGNRPAANKMSGGDYDGDFFQVFWDP 344
Query: 731 ELLKHFKE-----SERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLA 785
LL +F+E E K+ + R+I + FL N +A
Sbjct: 345 -LLVNFEEYPPMNYEGLPPEEKHDGCDYRVI------------REFLTEYIINDNLGVVA 391
Query: 786 ADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEK 845
FL L E E L+L + +D K+G++ +P +L
Sbjct: 392 ----------FLHLEHYDKEGDGLRSEPCLKLAKHHSYQVDYA-KTGVRKPLPTELFSNS 440
Query: 846 FPCYMRRD-ESVSFESTSVLGTIY 868
P YM R ++ S V+G+IY
Sbjct: 441 RPHYMPRVFGKKTYHSEDVIGSIY 464
>gi|113205194|gb|AAT39936.2| RNA-directed RNA polymerase-like, putative [Solanum demissum]
Length = 1137
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 155/701 (22%), Positives = 266/701 (37%), Gaps = 155/701 (22%)
Query: 209 QEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGD-DNILLVKF-DE 266
Q + S+ D G ++ + T F GP +N + L+ D DN L V F DE
Sbjct: 377 QPPKSPSITLDDGLVYVRRVLV-TPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDE 435
Query: 267 E--------LGGHRSSNNW--NDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDP 316
E L S+ N + Y + R+G ++G + + F F
Sbjct: 436 EWEKLYSTELLPKASTGNGIRTNIYERILSTLRKGFVIGDKKFEFLAF------------ 483
Query: 317 STSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSK 376
S+S ++ V M +S G T ++ R + +VA Y +R
Sbjct: 484 SSSQLRDNSVWMFASR----------RGLTANDIRSWMGDFSQIKNVAKYAARFGQSFGS 533
Query: 377 TMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKE 436
+ + + R IE I D V G + + +DG G IS D A K
Sbjct: 534 SRE-TLSVLRHEIEVIPD----------VKVHGTSYVFSDGIGKISADFARKV------- 575
Query: 437 KCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLP 496
A+ + T S + Q+R Y G KG + ++
Sbjct: 576 ------------------ASNCGLQYTPSAF-------QIR--YGG--YKGVVAVDP-YS 605
Query: 497 PQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSN-QPRKTYLSRNLIALLSYGGVPEIF 555
+ +R SM K ++D N L+V++ S QP YL+R L+ LLS GV +
Sbjct: 606 SMKLSLRKSMSKYESDN--------NKLDVLEWSKYQP--CYLNRQLVTLLSTLGVKDDV 655
Query: 556 FLDILRNALDDARGVFSNKRNALK-VSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSI 614
+ A+D + + A + + G + + A + + EP+L L
Sbjct: 656 LEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQT 715
Query: 615 LMKEEKKSLQA-GKLPVTESYYLMGTVDPTGILKSNEVCIILKD-GQVSWEK-------- 664
+ L+ ++ + +MG +D + L+ +V + G + +
Sbjct: 716 FRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNS 775
Query: 665 ------------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLAD 712
V+V +NP LH GDI VL+A V L V + FP G R +
Sbjct: 776 RSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVD----CVVFPQKGKRPHPN 831
Query: 713 EIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFL 772
E +G D DGD+YFV + +++ + ++ + D ++EE+E E F
Sbjct: 832 ECSGSDLDGDIYFVCWDQDMIPPRQVQAMEFPPPPSIQLDH---DVTIEEVE-EYF---- 883
Query: 773 NTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSG 832
T + ++ + A+ DR E AM +D P K+G
Sbjct: 884 -TNYIVNDGLGIIANAHVVFADR---------EPDMAM--------------MDFP-KTG 918
Query: 833 IKVEVPEDLKVEKFPCYMRR-DESVSFESTSVLGTIYNTVK 872
+ E+P L+ +++P +M + + ++ S V+G ++ VK
Sbjct: 919 VPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVK 959
>gi|225680005|gb|EEH18289.1| RNA-directed RNA polymerase Rdp1 [Paracoccidioides brasiliensis
Pb03]
Length = 1258
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 129/295 (43%), Gaps = 51/295 (17%)
Query: 604 DEPYLQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKS-------------- 648
++P++ L + + K L + K+ + + +L+G +D TG LK
Sbjct: 596 EDPFVTSLLELWRVWQIKYLKEKAKIAIDKGAFLLGCLDETGSLKGYFRSKRLGGGATYE 655
Query: 649 ------NEVCI-ILKDGQVSWEKV----LVYRNPGLHFGDIHVLKATYVKELEDFVGTSK 697
E+ + IL+ + ++E + ++ RNP LH GDI V+KA + L K
Sbjct: 656 QKLDCLPEIFVQILRHSEGTYEVIEGLCILARNPSLHPGDIRVVKAVDIPGLHHL----K 711
Query: 698 YAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLID 757
+ P G R +A +GGD DGD Y V + +LL + W + SA K +
Sbjct: 712 DVVVLPQTGDRDIASMCSGGDLDGDDYVVIWDQDLL-----PKDWFEEPMDYSAPKSKV- 765
Query: 758 FSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRL 817
+ ++ K F++ + D + L + D S + E LRL
Sbjct: 766 LDRDVTVDDIIKFFVSY---------MQNDRLPQIALAHLAIADYS--DDGVQDEKCLRL 814
Query: 818 INIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRR---DESVSFESTSVLGTIYN 869
++ A+D KSGI V + +DL+ +K+P +M R + + S +LG +Y+
Sbjct: 815 ATLHSAAVDY-NKSGIPVRMNQDLRPKKWPHFMERKFAKKDSQYTSRKILGQLYD 868
>gi|226291786|gb|EEH47214.1| predicted protein [Paracoccidioides brasiliensis Pb18]
Length = 1257
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 93/402 (23%), Positives = 161/402 (40%), Gaps = 96/402 (23%)
Query: 496 PPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIF 555
PP Q R K N LE+++ S+ + L+R LI +LS G+P+
Sbjct: 557 PPSVFQFRLGGCKAP----------HNGLEIIRHSSFCFAS-LNRQLIIVLSSLGIPDEM 605
Query: 556 FLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSIL 615
F+ L+ L++ +++ A+ + Y D ++L+ +
Sbjct: 606 FVKKLQAMLENLELAMTSQEQAIDLLQTY----VDPNQMTLVLADMGA------------ 649
Query: 616 MKEEKKSLQAGKLPVTESYYLMGTVDPTGILKS--------------------NEVCI-I 654
+L+G +D TG LK E+ + I
Sbjct: 650 -------------------FLLGCLDETGSLKGYFRSKRPGGGATYEQKLDCLPEIFVQI 690
Query: 655 LKDGQVSWEKV----LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSL 710
+ + ++E + ++ RNP LH GDI V+KA + L K + P G R +
Sbjct: 691 SRHSEGTYEVIEGLCILARNPSLHPGDIRVVKAVDIPGLHHL----KDVVVLPQTGDRDI 746
Query: 711 ADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKL 770
A +GGD DGD Y V + +LL + W + SA K + + ++ K
Sbjct: 747 ASMCSGGDLDGDDYVVIWDQDLL-----PKDWFEEPMDYSAPKSKV-LDRDVTVDDIIKF 800
Query: 771 FLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKK 830
F++ + D + LT+ D S + E LRL ++ A+D K
Sbjct: 801 FVSY---------MQNDRLPQIALAHLTIADYS--DDGVQDEKCLRLATLHSAAVDY-NK 848
Query: 831 SGIKVEVPEDLKVEKFPCYMRRDESV---SFESTSVLGTIYN 869
SGI V + +DL+ +K+P +M R ++ + S +LG +Y+
Sbjct: 849 SGIPVRMNQDLRPKKWPHFMERKFAMKDSQYTSRKILGQLYD 890
>gi|67524519|ref|XP_660321.1| hypothetical protein AN2717.2 [Aspergillus nidulans FGSC A4]
gi|40743829|gb|EAA63015.1| hypothetical protein AN2717.2 [Aspergillus nidulans FGSC A4]
gi|259486372|tpe|CBF84157.1| TPA: RNA-directed RNA polymerase (Sad-1), putative (AFU_orthologue;
AFUA_3G06790) [Aspergillus nidulans FGSC A4]
Length = 1203
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 118/270 (43%), Gaps = 22/270 (8%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P Q+RL KG L L+ +L I IRPSM K + D ++ +E+ +
Sbjct: 580 PTCFQIRL----GGAKGMLSLDPRLRGSKICIRPSMTKFQTDDQVN-------VEICGSG 628
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMD-Y 589
++P +L+R +I +L GV +F+ + ++ R + +N D
Sbjct: 629 SKPIPLFLNRQVIKILEDMGVDREWFMTLQELRIEQLRKATATTKNTATFVKGQSVADCV 688
Query: 590 DFTSARMILSGISLDE---PYLQHRLSILMKEEKKSLQ-AGKLPVTESYYLMGTVDPTGI 645
++ + LD P+L+ + ++ E + L+ ++PV + L G +D TG
Sbjct: 689 KLYRLFLLFHNLKLDYKKIPFLRAVVEAMVLRELRLLKHKARIPVHKGITLYGVMDETGF 748
Query: 646 LKSNEVCIILKD-----GQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAI 700
L NEV + + ++LV R+P LH GDI V + + I
Sbjct: 749 LNENEVFVTYQAMDRLAAPPQNCRLLVTRSPALHNGDIQ-YPYNVVPPKGHPLQQQRNCI 807
Query: 701 FFPCNGPRSLADEIAGGDFDGDMYFVSRNP 730
F G R L +++GGD DGD+Y + +P
Sbjct: 808 VFSQKGTRDLPSQLSGGDLDGDLYNIIWDP 837
>gi|391341002|ref|XP_003744822.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2-like
[Metaseiulus occidentalis]
Length = 1356
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 134/557 (24%), Positives = 214/557 (38%), Gaps = 120/557 (21%)
Query: 360 VSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKD--GNVVYKDGEALIHTDG 417
+ +V M+R L S T++ ++ EDE ++D G K + +DG
Sbjct: 520 IKNVGKKMAREGLCFSSTIE--------TVKVSEDECTIEEDITGGAHEKSNKPYTFSDG 571
Query: 418 TGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVR 477
G IS +L DD E A +S + P Q+R
Sbjct: 572 IGKISAEL--------------RDDVCE---------------ALKDSLRDKKPSAFQIR 602
Query: 478 LFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTY 537
KG + + L + + +R SM+K + + +S EV+K S + R
Sbjct: 603 F----RGAKGMVAFDPCLEGRRLVLRKSMVKFAS-------TSSSSFEVIKYS-EDRSLT 650
Query: 538 LSRNLIALLSYGGVP-EIFFLDILRNALDDARGV-FSNKRNALKVSFNYGGMD--YDFTS 593
L++ +I +L GVP EIF N +D A + F N+ + + D DF+
Sbjct: 651 LNKQIITILEQLGVPAEIFLRYQEANIIDFADALLFENQAHERLTASIKKDPDCVIDFSK 710
Query: 594 ARMILSGISLDEPYLQHRLSILMKEEKKSLQAG---KLPVTESYYLMGTVDPTGILKSNE 650
R + D PY + L L + +L+ +P L+G +D TG L+ +
Sbjct: 711 FREFGMSVVRD-PYFRAMLIELYRYIITNLRDKARISIPWGLGRNLLGVIDETGKLEYGQ 769
Query: 651 VCIIL------------------KDG-------QVSWEKVLVYRNPGLHFGDIHVLKATY 685
V + +DG +V +VLV + P +H GD+ +L+A
Sbjct: 770 VYVRYTPREDTSGPDIKVDNNTDEDGVPRQAGTEVVKGRVLVTKCPCVHPGDVRMLEAVD 829
Query: 686 VKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMST 745
+ EL V I FP GPR +E+AG D DGD Y V W
Sbjct: 830 IPELAHLVDV----IVFPQKGPRPHPNEMAGSDLDGDEYAVI--------------WDQN 871
Query: 746 SKNLSANKRLIDFS------LEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTL 799
N R + F E LE E + F+ +F ++ K ++ A DR
Sbjct: 872 FFFADGNHRPMIFDDAPAEPSESLELEDYYNFI-CQFILNDNKGTISNAHLAHADR---- 926
Query: 800 GDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYM-RRDESVSF 858
EE + LRL LD K + P ++ V+ +P +M ++D ++
Sbjct: 927 -----EEDGIFSDKCLRLAEKVSMTLDFAKTGRLTQLEPSEV-VKVYPDFMQKQDHKATY 980
Query: 859 ESTSVLGTIYNTVKSYE 875
S VLG +Y ++ E
Sbjct: 981 RSEKVLGKLYRASRALE 997
>gi|320034225|gb|EFW16170.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
Length = 1289
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 89/330 (26%), Positives = 133/330 (40%), Gaps = 55/330 (16%)
Query: 498 QTIQIRPSMIKVKADRD-----LSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGV- 551
+ IQI S +K K L D Q + EVV S + R L+ L+ +L +GGV
Sbjct: 673 ECIQISGSQLKTKPHPSDCRMMLDDHQL--TFEVVSWSRELRPVNLNVQLLMVLQHGGVQ 730
Query: 552 -------------------PEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFT 592
+I +I A +G++ ++ F ++
Sbjct: 731 TDRLKNLVRCEMNTWYQEFKDIITNEIASRAWVQKQGLYEKRKTRRIDDFPTENVE---Q 787
Query: 593 SARMILSGI-SLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEV 651
+ ++ SG L YL +RL + + L + K+ + ES Y DP +L +EV
Sbjct: 788 AILLLDSGFHPLKSVYLMNRLKTFLDDYCARLDSLKIRIPESTYAYCIADPYNVLAEDEV 847
Query: 652 CIILKDGQVSWEK----------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIF 701
+ W+ VLV RNP DI +A + KEL F K I
Sbjct: 848 HLGFSK---PWDSEGYTDLDGMDVLVGRNPAHLPSDIQKRRAVFKKELRYF----KDVIV 900
Query: 702 FPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKR--LIDFS 759
FP G LA ++GGD+DGD + +P+L+ F + K + K LID S
Sbjct: 901 FPTAGALPLASMLSGGDYDGDQVWTCWDPQLVNQFTNTP---FDPKKIPERKEFGLIDCS 957
Query: 760 LEELESEL-FKLFLNTRFCPSNAKSLAADC 788
EEL++ F FL F + A SL C
Sbjct: 958 -EELKANFDFDGFLTKMFVFNAAPSLLGHC 986
>gi|409046078|gb|EKM55558.1| hypothetical protein PHACADRAFT_173705 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1167
Score = 74.3 bits (181), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 114/445 (25%), Positives = 192/445 (43%), Gaps = 86/445 (19%)
Query: 415 TDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLM 474
TDG G ISE+L T V++E R R+ A+ P ++
Sbjct: 550 TDGAGLISEELM----TAVWEEL--------RKKSRRYRRAHMM------------PDVI 585
Query: 475 QVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPR 534
Q R + G+ KGT ++++LP + + IRPSMIK +A G + T P
Sbjct: 586 QHR--FQGS--KGTSTVSRRLPGRVLVIRPSMIKFEA-----TGSRMVEVAAAFTRAGPF 636
Query: 535 KTYLSRNLIALLS----YGGVPEIFFLDILRNA-LDDARGVFSNKRNALKVSFNYG-GMD 588
+ L+R LI LL GG EI L L++A + + + ++ A ++ +G G
Sbjct: 637 R--LNRPLIMLLEGLRIRGGY-EI--LKKLQDAVIQETKDAANSLSTAARLLEPHGLGTG 691
Query: 589 YDFTSARMILSGISLD---EPYLQHRLSILMKEEKKSLQ-AGKLPVTESYYLMGTVDPTG 644
+ +S L+ + LD +P+ L++ + + L+ ++PV Y L+G DP G
Sbjct: 692 FKVSSVFANLARLELDSMPDPFFHRVLNVAIYHILRDLKYHARIPVPGGYTLVGVADPYG 751
Query: 645 ILKSNEV--CI--------ILKDGQVSWEKVLVYRNPGLHFGDIHVLKAT--YVKELEDF 692
L EV C+ I +G+ +++ R+P +H GD+ +++A K E
Sbjct: 752 YLGEGEVFACVTTSTNAEPIFLEGE-----MMISRSPTVHPGDVQIVRAIGRPPKGSEFD 806
Query: 693 VGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSAN 752
A+ F G R A + GD DGD+Y + ELL + S + +A
Sbjct: 807 KHPIMNALVFATIGKRPPASCLGNGDLDGDVYVCTTKEELLP----KQTRAPASYDAAAR 862
Query: 753 KRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKE 812
K + S ++ ++ F+ C N +A+ R+L L D ++
Sbjct: 863 KEVPHQSTQQDMADFVTEFI----CSDNIGIIAS--------RWLELAD----KRGIFDP 906
Query: 813 NMLRLINIYYDALDAPKKSGIKVEV 837
LRL ++ A D P K+G+ V +
Sbjct: 907 GCLRLAYLHSLATDYP-KTGLPVPL 930
>gi|390596235|gb|EIN05637.1| RdRP-domain-containing protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 1230
Score = 73.9 bits (180), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 143/668 (21%), Positives = 263/668 (39%), Gaps = 113/668 (16%)
Query: 242 YLNQTRTHLQRELGDDNILLVKFDEELGGHRSSNNWNDSY--SKYNEIAREGILVGLRCY 299
Y N + ++ + D++ L +FD +L G D + + + R GI +G R +
Sbjct: 431 YPNHQQHFVRVQFCDEDYLQYRFDRDLDG--------DGFVRDRVGGVMRTGIRIGGRAF 482
Query: 300 HFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRT 359
F + ++ +FVR F G++ + + + ++ F V
Sbjct: 483 EFLAYSQSALKDHA---------VWFVR----PFNLDGHR--VDAEAIRQSLGTFTKVIR 527
Query: 360 VSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTG 419
S+ Y +R+S + T +I +E R D +V G+ TDG+
Sbjct: 528 FPSL--YGARMSQAFTATDP--------SITVTPNEIKRIPDIEIVDSTGQKRQFTDGS- 576
Query: 420 FISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLF 479
+ L+ P ++ S + K++ + V + + P Q+R
Sbjct: 577 -LPSTLSYADPIDYFRLAGVGTISLALA---KDIASALLAVRKRKRGKYFKPRAFQIRF- 631
Query: 480 YNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLS 539
KG + ++ + + +RPSMIK ++ L +E+ KT ++P K L+
Sbjct: 632 ---AGSKGMVSVDINEEGRVLCLRPSMIKFESPDSLD-------IEIAKTFDRPGKFLLN 681
Query: 540 RNLIALLSYGGVPEIFFLDILRNALDDARGVF------SNKRNALKVSFNYGGMDYDFTS 593
R LI +L G P F AL DA S +++A + + G Y S
Sbjct: 682 RPLIMILEGLGAPAAAF-----EALQDAAVEEAEAARESLQKSARMLEVHGLGGAYRLPS 736
Query: 594 ARMILSGISL-------------DEPYLQHRLSILMKEEKKSLQA-GKLPVTESYYLMGT 639
+ + L D+ ++ ++ + + L+ ++PV +S+ L+G
Sbjct: 737 VADVPHRLGLPRSSEARGTTQCIDDEFMDRMVAFAVNHVLRELKHHARIPVPDSWTLVGI 796
Query: 640 VDPTGILKSNEV--CIILKDG--QVSWE-KVLVYRNPGLHFGDIHVLKATYVKELEDFVG 694
D G+L+ EV C+ G +V E V+V R+P H GD+ + +A
Sbjct: 797 ADIHGVLEEGEVFACVQPPQGGQRVYLEGNVMVTRSPVAHPGDVQMARAIGRPPPGSAYD 856
Query: 695 TSKY--AIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL-KHFKESERWMSTSKNLSA 751
T + F G R L + GGD DGD++ VS+ ++ +H S +
Sbjct: 857 TEPIPNTVIFSVKGSRPLPSALGGGDLDGDVFNVSQFADIFPRHLHP-----PASYEAAV 911
Query: 752 NKRL-IDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAM 810
K L D ++E++ + N R + A W L + D+S E
Sbjct: 912 RKELDRDSTIEDVMDFVVDFINNDRL------GVIAINW-------LIIADQSPE--GVF 956
Query: 811 KENMLRLINIYYDALDAPKKSGIKV---EVPEDLKVEK----FPCYMRRDESVSFESTSV 863
++L ++ DA+D +KSG V +VP L + P + ++ +EST
Sbjct: 957 CTECIKLSQLHSDAVDF-QKSGRSVPLGDVPRLLMRARPDWNAPETINPEDGAYYESTKA 1015
Query: 864 LGTIYNTV 871
+G ++ +
Sbjct: 1016 IGKLFRRI 1023
>gi|303319845|ref|XP_003069922.1| RNA dependent RNA polymerase family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240109608|gb|EER27777.1| RNA dependent RNA polymerase family protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 1372
Score = 73.9 bits (180), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 89/330 (26%), Positives = 133/330 (40%), Gaps = 55/330 (16%)
Query: 498 QTIQIRPSMIKVKADRD-----LSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGV- 551
+ IQI S +K K L D Q + EVV S + R L+ L+ +L +GGV
Sbjct: 756 ECIQISGSQLKTKPHPSDCRMMLDDHQL--TFEVVSWSRELRPVNLNVQLLMVLQHGGVQ 813
Query: 552 -------------------PEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFT 592
+I +I A +G++ ++ F ++
Sbjct: 814 TDRLKNLVRCEMNTWYQEFKDIITNEIASRAWVQKQGLYEKRKTRRIDDFPTENVE---Q 870
Query: 593 SARMILSGI-SLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEV 651
+ ++ SG L YL +RL + + L + K+ + ES Y DP +L +EV
Sbjct: 871 AILLLDSGFHPLKSVYLMNRLKTFLDDYCARLDSLKIRIPESTYAYCIADPYNVLAEDEV 930
Query: 652 CIILKDGQVSWEK----------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIF 701
+ W+ VLV RNP DI +A + KEL F K I
Sbjct: 931 HLGFSK---PWDSEGYTDLDGMDVLVGRNPAHLPSDIQKRRAVFKKELRYF----KDVIV 983
Query: 702 FPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKR--LIDFS 759
FP G LA ++GGD+DGD + +P+L+ F + K + K LID S
Sbjct: 984 FPTAGALPLASMLSGGDYDGDQVWTCWDPQLVNQFTNAP---FDPKKIPERKEFGLIDCS 1040
Query: 760 LEELESEL-FKLFLNTRFCPSNAKSLAADC 788
EEL++ F FL F + A SL C
Sbjct: 1041 -EELKANFDFDGFLTKMFVFNAAPSLLGHC 1069
>gi|429964430|gb|ELA46428.1| hypothetical protein VCUG_02106 [Vavraia culicis 'floridensis']
Length = 2289
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 113/470 (24%), Positives = 186/470 (39%), Gaps = 136/470 (28%)
Query: 471 PLLMQVRLF-YNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKT 529
P Q+R Y G V+ + P + +R SM K K+ T+N LEVV
Sbjct: 962 PTAFQIRFAGYKGVLVRANI-------PHDLMLRKSMRKFKS--------TYNVLEVVSY 1006
Query: 530 SNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDY 589
S Q + YL+R +I +L GVP+ F+ L+N + Y +++
Sbjct: 1007 S-QSIECYLNRQIIMILEGLGVPKHNFI-CLQNEY---------------LMHMYRAINH 1049
Query: 590 DFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSN 649
+SG++L + L L +E G++ V LMG +D G+L N
Sbjct: 1050 SLIGKYCRISGVALVDRMSGALLGRLFRE---MCAKGRIFVKNGIVLMGVIDEEGVLGEN 1106
Query: 650 EVCIIL--KDGQVS----------------------WEKVL------------------- 666
EV + + DG VS +E+ L
Sbjct: 1107 EVFLRIYEDDGDVSGGRSKRMRSNEIGAEEMRKKELFERALSVVDRSGVGTADSSADDIN 1166
Query: 667 ------VYRNPGL-------------HFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGP 707
V R+ G+ H GDI ++ Y KEL + K + F G
Sbjct: 1167 TSTGGGVLRDDGVVVGGAIVAKNPCLHPGDIRKVQCVYKKELMHY----KNVLVFSKKGR 1222
Query: 708 RSLADEIAGGDFDGDMYFVSRNPEL---LKHFKESERWMS--TSKNLSANKRLIDFSLEE 762
R + + +G D DGD+YFVS + L ++HF ++ + S + +++ A + F+
Sbjct: 1223 RPVFNMCSGSDLDGDLYFVSWDARLIPPIEHFPQNYQSSSYLSKEHIVAQDMVNFFTRFA 1282
Query: 763 LESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYY 822
E EL K+ SNA + +D + D A L+L ++
Sbjct: 1283 KEDELGKI--------SNAHLVYSDVHG--------ITDPQA----------LKLAYLFS 1316
Query: 823 DALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVK 872
+D P K+G +P++L+ ++P +M R S+ES V+G +Y V+
Sbjct: 1317 MGVDFP-KTGYIARLPQNLEPYEYPDFMERMR--SYESVRVMGMMYRRVQ 1363
>gi|326476492|gb|EGE00502.1| hypothetical protein TESG_07807 [Trichophyton tonsurans CBS 112818]
Length = 1207
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 120/529 (22%), Positives = 213/529 (40%), Gaps = 94/529 (17%)
Query: 217 KWDSGKTH----MYHCHISTKGNCTFKGPYLNQTRTHLQRELGD--DNILLVKFDEELGG 270
+WD H + H T GPY +T+ + R+ D D + V+F +E G
Sbjct: 405 EWDINLMHEKNVLVHRATVTPAGIYLSGPY-AETKNRILRKYLDNIDYFIRVEFLDETGD 463
Query: 271 ----HRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFV 326
S+N + ++ + + G + R + F F S C+F
Sbjct: 464 PVFFDPSANLEQIFHQRFAGVMKRGFEIAGREFEFLGFSHS---------SLRAQTCWFA 514
Query: 327 RMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSR 386
+++ D L+ +T+ F H+R+ S A +R+ S T+ +
Sbjct: 515 APFTTSNGDH-----LNARTIIGNIGYFDHIRSPSKQA---ARIGQAFSDTL------TS 560
Query: 387 INIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKC-PTYVYKEKCTNDDSTE 445
I++ + E K +V D I +DG G IS DL + Y +E+
Sbjct: 561 ISVSK---EVVWMKAPDVKRNDR---IFSDGVGVISRDLMYRIWNEYALRERVK------ 608
Query: 446 RSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPS 505
P + Q+R+ KG + L+ + + + +R S
Sbjct: 609 -------------------------PTVFQIRI----AGAKGMVSLDTRRKGEFLMLRES 639
Query: 506 MIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALD 565
M+K D DL + +E+ + YL+ +I +L GVP F I ++ ++
Sbjct: 640 MVKFPTD-DLYN------IEICGAGIRALPFYLNNQIIKILEDLGVPFEAFHQIQQDEIN 692
Query: 566 DARGVF-SNKRNALKVSFNYGGMDYDFTSARMILSGISL---DEPYLQHRLSILMKEEKK 621
F S +R A + + ++L G+ + +P+L+ + + +
Sbjct: 693 FLYSAFNSTERAAKFLEDSPVPRSLRLPWLFLVLKGLGIRYTQDPFLKRVMELTTLLRLR 752
Query: 622 SLQ-AGKLPVTESYYLMGTVDPTGILKSNEV-CIIL-KDGQ---VSWEKVLVYRNPGLHF 675
L+ ++ V + L G +D TG LK NE+ C+ L ++G+ + +KV++ R+P LH
Sbjct: 753 DLKYRARIRVPNAVTLYGIMDETGYLKENEIYCVYLGENGRREILVRDKVVITRSPALHP 812
Query: 676 GDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMY 724
GDI V+ A V E + F +G R L ++GGD DGD+Y
Sbjct: 813 GDIQVVNAVDVPENSPLRKLHN-CVAFSQHGDRDLPSMLSGGDLDGDLY 860
>gi|134114255|ref|XP_774375.1| hypothetical protein CNBG3560 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257010|gb|EAL19728.1| hypothetical protein CNBG3560 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1123
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 102/387 (26%), Positives = 169/387 (43%), Gaps = 52/387 (13%)
Query: 500 IQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDI 559
I++RPSMIK K+ DL+D N + + K + +L+R I ++ GVP + I
Sbjct: 585 IRLRPSMIKFKS--DLAD---LNVIRIAKY----QAAFLNRQFINIMCANGVPHELIIGI 635
Query: 560 LRNALDDARGVFSNKRNALKVSFN---YGGMDYDFTSARMILSGISLDEPYLQHRLSILM 616
+A+ D +G F ++ V+ N + DF A++I SG + + P L +I+
Sbjct: 636 FEDAIADIKG-FKDRVWNNAVTENDQQLIALCNDFPLAQLIKSGFN-ENPLLLDVAAII- 692
Query: 617 KEEKKSLQ----AGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEK-----VLV 667
E ++LQ ++ + + YL+G D TG LK EV ++ S K VLV
Sbjct: 693 --ECRALQDLKWRARVKLLDGVYLIGIADETGTLKEGEVFCQFQENDESPPKIVVNEVLV 750
Query: 668 YRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVS 727
R P LH GD+ A EL K I F G R + + GGD DGD Y +
Sbjct: 751 CRAPALHPGDVRRAWAVDNPELRHL----KNVIVFSTQGMRDMPSMLGGGDLDGDDYTLI 806
Query: 728 RNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAAD 787
+ ++ K + + + + K + L E + LN + +
Sbjct: 807 WDQRFVQSLKVYDPMDYEAPDPISVKHVTQKHLNE---NFVQYILN------DVLGQVDN 857
Query: 788 CWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFP 847
C A+ D + L L I+ A+D K+G + L+ +++P
Sbjct: 858 CHLALSDMY-----------TPFDPRCLHLSEIHSTAVDF-AKTGQAAALDPSLRPKEWP 905
Query: 848 CYMRRDE-SVSFESTSVLGTIYNTVKS 873
+M +D+ V +EST +LG I+ V++
Sbjct: 906 DFMDKDDVKVVYESTGILGKIFRIVQA 932
>gi|345563096|gb|EGX46100.1| hypothetical protein AOL_s00110g264 [Arthrobotrys oligospora ATCC
24927]
Length = 1279
Score = 73.6 bits (179), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 120/281 (42%), Gaps = 27/281 (9%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P + Q+R KG + L+ + + SM+K DG E+ ++
Sbjct: 660 PTVFQIRF----RGAKGVVALDSTQRDPILCLYDSMVKF-------DGLKNKVFEICRSF 708
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARG-VFSNKRNALKVSFNYGGMDY 589
+P YL+R +I +L GVP F+D+ AL R F+ A + +
Sbjct: 709 TKPLPFYLNRCIIKILEDRGVPIKNFMDLQGRALATLRERTFTPDSAAHFLDYQNRCTQA 768
Query: 590 DFTSARMILSGISLD---EPYLQHRLSILMKEEKKSLQ-AGKLPVTESYYLMGTVDPTGI 645
+ L + D + +L+ + M + ++ ++ V + + L+G +D TG
Sbjct: 769 NIPFLIRELFALGWDYKEDNFLRKVVEFTMLTTLRDMKYRARIQVDKGFTLVGVLDETGY 828
Query: 646 LKSNEV-CIILKDG---QVSWEKVLVYRNPGLHFGDIHVLKAT---YVKELEDFVGTSKY 698
L+ E+ C I ++G + V + RNP LH GDI ++ A Y L D +
Sbjct: 829 LQEGEIYCPIQREGGKREAHRGVVAICRNPALHPGDIQIVTAVEVPYDSPLRDLMN---- 884
Query: 699 AIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKES 739
+ F G R L ++GGD DGD++ + P L+ F +
Sbjct: 885 CVVFSQRGQRDLPSMLSGGDLDGDIFHIWWEPSLMPRFSSA 925
>gi|328872313|gb|EGG20680.1| RNA-directed RNA polymerase [Dictyostelium fasciculatum]
Length = 2876
Score = 73.6 bits (179), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 103/447 (23%), Positives = 182/447 (40%), Gaps = 64/447 (14%)
Query: 538 LSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMI 597
L+R +I LLS GVP+ FL +L +L++ + + A + +D S I
Sbjct: 1518 LNRQVINLLSGLGVPDRCFLTLLSQSLNELASLLHLPKVAKRA---LSSDLFDDVSDGEI 1574
Query: 598 LSGISLDEPYLQHRLS-ILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILK 656
LS +P ++ L I K + +P+ + L+G D T LK +V + +
Sbjct: 1575 LS-----DPMIRGTLHRIYCKRLVEYRDKCFIPIDTARTLLGVTDDTASLKEGQVFLQVS 1629
Query: 657 DG----QVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLAD 712
D Q+ V V +NP LH GD+ +++A + L V + F NG
Sbjct: 1630 DENGELQIVTGPVAVAKNPCLHAGDVRIVQAVDIPALHHLVD----VVCFSQNGSVPTFQ 1685
Query: 713 EIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFL 772
E +G D DGD YFV + E++ K+ + ++ + + I +S L ++
Sbjct: 1686 ECSGSDLDGDRYFVLFDREMIGEIKQHDAFLGEDAVAADSDPTI------TQSSLIAQYI 1739
Query: 773 NTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSG 832
+ A AV D S + A+ L ++ +D K+G
Sbjct: 1740 TN--IQKGTLGMIALAHLAVCDV------HSPKHPLAIA-----LAIEHFKEVDR-VKTG 1785
Query: 833 IKVEVPEDL------KVEKFPCYMRRD--ESVSFESTSVLGTIYNTVKSYEAVDRSVTEI 884
+ E+P D+ + +KFP +M + + +ES +LG +Y S + V R + E+
Sbjct: 1786 VGGEIPTDVFQILGEQFDKFPNFMEKSLPQKSYWESDKILGRLYAQCVSLQNVIRFMPEV 1845
Query: 885 WKLPCFDDGVPEACMTKWKGY-------YDQYRWEMKEAIDKCTVEREEAAELVIEKYKQ 937
P W+ Y Y +YR ++ + + +E EE +++I+ +
Sbjct: 1846 -------KVDPHLLTPGWETYQADAIETYRRYRHQVGSLLKRYDIENEE--DVLIQYVDE 1896
Query: 938 ILYGAAEFEQSTRTLEEIYNEALAIYN 964
+ G + EI+N I N
Sbjct: 1897 TMSGHT---LDKVVVMEIFNHYTVIQN 1920
>gi|225678504|gb|EEH16788.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 1262
Score = 73.6 bits (179), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 136/634 (21%), Positives = 262/634 (41%), Gaps = 102/634 (16%)
Query: 240 GPYLNQTRTHLQR--ELGDDNILLVKFDEELGG---HRSSNNWNDSY-SKYNEIAREGIL 293
GP L +T+ + R E D+ L V+F +E G + S + + + S++ + +EGI
Sbjct: 432 GPQL-ETKNRVLRIYEANVDHFLRVEFVDESGDPIRYDSRASVDAIFQSRFKGVLKEGIT 490
Query: 294 VGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYM 353
+ R + F F S C+FV + F+ G Y + + R+
Sbjct: 491 IAGRKFEFLGFSHS---------SLRSQTCWFV----APFVSGGTLYNATVIIQNLGRFD 537
Query: 354 FMHVRTVSSVANYMSRLSLILSKTM-KLEVDFSRINIERIEDEPCRDKDGNVVYKDGEAL 412
+H S A +R+ S T+ + + F +++ G V ++G
Sbjct: 538 HIH-----SPAKQAARIGQTFSDTLTSIPISFDMLSV------------GEDVERNGR-- 578
Query: 413 IHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPL 472
+ +DG G IS L + ++K+ + ++ + + A +A ++ G +
Sbjct: 579 VFSDGVGTISPSLMYE----IWKDHSLRA-KVKPTVFQIRVAAPEPLLAGFHAYRG---I 630
Query: 473 LMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQ 532
L+ F KG + L+ +++ +R SM+K + ++E+ + +
Sbjct: 631 LLTETWF---IGAKGMIALDSTKTGKSLMLRKSMVKFPVPETVGG----LNIELCGSGLK 683
Query: 533 PRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALK-VSFNYGGMDYDF 591
+L+ LI +L GV + FL + + ++ R + A + + +
Sbjct: 684 ALPFFLNAQLIKILEDLGVEQSAFLKLQADEIERLRATAPSTAQAARFLEDTHIAKSIGL 743
Query: 592 TSARMILSGISL---DEPYLQH--RLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGIL 646
IL G L ++ +L+ L++L+K +A ++ V + L G +D TGIL
Sbjct: 744 PWLISILEGFRLSHTNDEFLRRVMELAVLIKLRDLKYRA-RIRVPNAVTLFGIMDETGIL 802
Query: 647 KSNEV-CIIL-KDGQ---VSWEKVLVYRNPGLHFGDIHVLKATYV------KELEDFVGT 695
K E+ C+ L +DG + +V+V R+P +H GD+ V +A V ++L + +
Sbjct: 803 KEGEIFCVTLSEDGHREVLVRPRVVVTRSPAMHPGDVQVARAVDVPADSPLRQLHNCIAF 862
Query: 696 SKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRL 755
S+Y G R L ++GGD DGD+Y V + L+ + N+ +
Sbjct: 863 SQY-------GDRDLPSMLSGGDLDGDLYNVIYDETLIPKITVPPAEYPRVEEKVLNRPV 915
Query: 756 IDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENML 815
+ ++ F+ F + A QA+ D+ ++ E L
Sbjct: 916 V-------TDDIIDFFVT--FMQQDQLGRIATIHQAIADQ---------RDRGTFDEQCL 957
Query: 816 RLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCY 849
L ++ A+D KSG+ V++ ++ KFP Y
Sbjct: 958 LLAELHSTAVDF-SKSGVPVDLA---RIPKFPRY 987
>gi|171683804|ref|XP_001906844.1| hypothetical protein [Podospora anserina S mat+]
gi|170941862|emb|CAP67515.1| unnamed protein product [Podospora anserina S mat+]
Length = 1230
Score = 73.2 bits (178), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 115/265 (43%), Gaps = 23/265 (8%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P Q+R KG L L+ +L I IRPSM K ++ + +L++ +
Sbjct: 632 PTCFQIRW----AGAKGMLSLDTELEGSQICIRPSMKKFESPDE-------ANLDICDMA 680
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSN-KRNALKVSFNYGGMDY 589
++P L+R +I +L P +FL++ R ++ R + A ++ G
Sbjct: 681 SKPIPMMLNRQMIKILEDMDAPPWWFLELQRKEVNHLRAITRTVSSTASFLAMKDIGESI 740
Query: 590 DFTSARMILSGISLD---EPYLQHRLSI-LMKEEKKSLQAGKLPVTESYYLMGTVDPTGI 645
+ +D + +L+ + + L+KE K ++PV + L G +D TG
Sbjct: 741 RLPHLLRQTEAMGVDYHQDLFLRSVVEMALLKEIKLIKHKARIPVPKGITLFGVMDETGF 800
Query: 646 LKSNEVCIILKDGQVSW------EKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYA 699
L+ +V + Q + +KV++ R+P LH GDI + E + +
Sbjct: 801 LQEGQVYVSFDTMQGRYHEPPECQKVVITRSPALHPGDIQLAHHVIPPEGHPLLEL-RNC 859
Query: 700 IFFPCNGPRSLADEIAGGDFDGDMY 724
+ F G R L ++GGD DGD+Y
Sbjct: 860 VVFSQRGDRDLPSMLSGGDLDGDIY 884
>gi|302510543|ref|XP_003017223.1| hypothetical protein ARB_04100 [Arthroderma benhamiae CBS 112371]
gi|291180794|gb|EFE36578.1| hypothetical protein ARB_04100 [Arthroderma benhamiae CBS 112371]
Length = 1233
Score = 73.2 bits (178), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 120/535 (22%), Positives = 212/535 (39%), Gaps = 106/535 (19%)
Query: 217 KWDSGKTH----MYHCHISTKGNCTFKGPYLNQTRTHLQRELGD--DNILLVKFDEELGG 270
+WD H + H T GPY +T+ + R+ D D + V+F +E G
Sbjct: 405 EWDISLMHEKNVLVHRATVTPAGIYLSGPY-AETKNRILRKYLDNIDYFIRVEFLDETGD 463
Query: 271 ----HRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFV 326
S+N + ++ + + GI + R + F F S C+F
Sbjct: 464 PVFFDPSANLEQIFHQRFAGVMKRGIEIAGREFEFLGFSHS---------SLRAQTCWF- 513
Query: 327 RMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSR 386
++ F Y L+ +T+ F H+R+ S A +R+ S T+
Sbjct: 514 ---AAPFTTANGDY-LNARTIIGNIGYFDHIRSPSKQA---ARIGQAFSDTLTSISVSKE 566
Query: 387 INIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKC-PTYVYKEKCTNDDSTE 445
+ R D D+ I +DG G IS DL + Y +E+
Sbjct: 567 VVWMRAPDVKRNDR------------IFSDGVGVISCDLMHRIWNEYALRERVK------ 608
Query: 446 RSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPS 505
P + Q+R+ KG + L+ + + + +R S
Sbjct: 609 -------------------------PTVFQIRI----AGAKGMVSLDTRRKGEFLMLRES 639
Query: 506 MIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALD 565
M+K D DL + +E+ + YL+ +I +L GVP F + R+ ++
Sbjct: 640 MVKFPTD-DLYN------IEICGAGIRALPFYLNNQIIKILEDLGVPFEAFHQLQRDEIN 692
Query: 566 DARGVFSNKRNALK-VSFNYGGMDYDFTSARMILSGISL---DEPYLQHRLSILMKEEKK 621
FS+ A K + + ++L G+ + +P+L+ + + +
Sbjct: 693 FLYSTFSSTERAAKFLEDSPVPRSLRLPWLFLVLKGLGIRYTQDPFLKRVMELTTLLRLR 752
Query: 622 SLQ-AGKLPVTESYYLMGTVDPTGILKSNEV-CIIL-KDGQ---VSWEKVLVYRNPGLHF 675
L+ ++ V + L G +D TG LK NE+ C+ L ++G+ + + V++ R+P LH
Sbjct: 753 DLKYRARIRVPNAVTLYGIMDETGYLKENEIYCVYLGENGRREILVRDNVVITRSPALHP 812
Query: 676 GDIHVLKATYV------KELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMY 724
GDI V+ A V ++L + V S++ G R L ++GGD DGD+Y
Sbjct: 813 GDIQVVNAVDVPANSPLRKLHNCVAFSQH-------GDRDLPSMLSGGDLDGDLY 860
>gi|320034943|gb|EFW16885.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
Length = 1195
Score = 73.2 bits (178), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 101/396 (25%), Positives = 168/396 (42%), Gaps = 58/396 (14%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P + Q+R KG + L+ +L + +++R SM+K A R FN +EV +
Sbjct: 607 PTVFQIRF----AGAKGMVSLDTRLKGEQLRLRESMVKFSARR------AFN-IEVCGSG 655
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVS--FNYGGMD 588
+ YL+ +I +L GVP F+ + D+ + S ++A K S +
Sbjct: 656 IRALPFYLNAQIIKILEDLGVPPTGFIKL---QSDEIERLLSVGKSASKTSQFLEESSIA 712
Query: 589 YDFTSARMI--LSGISL---DEPYLQH--RLSILMKEEKKSLQAGKLPVTESYYLMGTVD 641
+ +I L G+ +P+L+ +L+I K +A ++ V E+ L G +D
Sbjct: 713 KEVRVPWLIEILHGLGFHHDQDPFLRSVVQLAIFFKMRDLKYRA-RIRVPEAVTLYGIMD 771
Query: 642 PTGILKSNEV-CIILKD--GQ--VSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTS 696
TG L E+ C L + G+ + ++V+V R P LH GD+ KA V E
Sbjct: 772 ETGYLNEGEIFCTFLNEEGGREILVRDQVIVTRAPALHPGDVQYAKAVDVPENSPLRSLH 831
Query: 697 KYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLI 756
+ F +G R L ++GGD DGD+Y V + ER M AN +
Sbjct: 832 N-CVIFSQHGFRDLPSMLSGGDLDGDLYNVIYD----------ERLMPPCTYPPANYPKV 880
Query: 757 DFSL---EELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKEN 813
+ L E L ++ F+ F + A QA+ D+ + +
Sbjct: 881 EEKLLDREVLRDDIIDFFVT--FMQQDQLGRIATIHQAIADQ---------RPAGTLDRD 929
Query: 814 MLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCY 849
L L ++ A+D KSGI V++ ++ K P Y
Sbjct: 930 CLLLAELHSVAVDF-SKSGIPVDL---TRIPKRPRY 961
>gi|66813222|ref|XP_640790.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
gi|60468778|gb|EAL66778.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
Length = 2285
Score = 73.2 bits (178), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 100/384 (26%), Positives = 155/384 (40%), Gaps = 91/384 (23%)
Query: 370 LSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKC 429
L L+ S T+K +V + IE I D ++ K+G T+G GFI L
Sbjct: 1199 LCLLFSTTLKSQVIYK---IEMIPD---------IISKEGHNF--TEGCGFIGSKLV--- 1241
Query: 430 PTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTL 489
++ +++Y Q+RL KG L
Sbjct: 1242 -----------------------------ELINQQNNYNSSTCAYQIRL----GGSKGVL 1268
Query: 490 LLNKKLPPQTIQIRPSMIKVKADRDLSDGQT---FNSLEVVKTSNQPRKTYLSRNLIALL 546
+LN+ + ++QIRPSM K + D GQ +LE+V S R L+R I LL
Sbjct: 1269 VLNENIDEMSLQIRPSM--SKFELDYKSGQLDEEHKTLEIVSASTTSR-CKLNRQAITLL 1325
Query: 547 SYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFN---YGGMDYDFTSARMILSGISL 603
S GV + FL +L L+ N + + V+ + G T +
Sbjct: 1326 SNAGVEDSTFLQMLEVELN------QNAQTLVDVNLSKELLGDFFQHITEYEL------F 1373
Query: 604 DEPYLQHRLSILMKEEKKSLQAGK----LPVTESYYLMGTVDPTGILKSNEVCIILKD-- 657
++ Y++ SIL+K K L + + V ES L+G D +G L + V I +++
Sbjct: 1374 NDYYIR---SILLKLYKSKLIKIQDKCWIEVKESRNLLGVCDTSGTLPEDTVYIEVEELD 1430
Query: 658 -------GQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSL 710
+V +V V +NP H GD+ LKA L + +FF NG
Sbjct: 1431 PIDNLMKPKVIIGRVAVLKNPCHHPGDVRFLKAIDHPPL----NGKRNVLFFSTNGMVPN 1486
Query: 711 ADEIAGGDFDGDMYFVSRNPELLK 734
+ +G D DGD YFV + L++
Sbjct: 1487 FKQCSGSDLDGDRYFVIYDQTLIR 1510
>gi|429963046|gb|ELA42590.1| hypothetical protein VICG_00342 [Vittaforma corneae ATCC 50505]
Length = 2092
Score = 72.8 bits (177), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 94/392 (23%), Positives = 171/392 (43%), Gaps = 66/392 (16%)
Query: 493 KKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVP 552
K+L + +R SM K + ++ +LE++ S + YL+R +I +L GVP
Sbjct: 1090 KQLGTPDLIVRKSMNKFDS--------SYRTLEIIAVS-KSSSFYLNRQIILILEGLGVP 1140
Query: 553 EIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRL 612
F+D+ + + K+S ++ + + M IS D P+ +
Sbjct: 1141 IQIFIDLQDKYIQNMLS---------KLSQDFTLFIKKYVNTTM---NISTDLPFYRKLQ 1188
Query: 613 SILMKEEKKSLQA-GKLPVTESYYLMGTVDPTGILKSNEV-CIILKDGQVSWEKV----- 665
S ++ + + L K+ + + +G +D GIL+ +++ C+ KD S E +
Sbjct: 1189 SPILSKVFEELNTKSKILIGQGRSAIGVLDELGILEEDQIFCMFQKDVDESMENLKDYGS 1248
Query: 666 --------LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGG 717
+V +NP +H GDI V+K +L K I F G R + ++ +G
Sbjct: 1249 YIVPNCYCIVAKNPVMHPGDIRVVKCVDAPKLHYL----KNVIVFSKKGSRPIFNQCSGS 1304
Query: 718 DFDGDMYFVSRNPELL-KHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRF 776
D DGD++ VS L+ K + +++T L +K L+ S++ ++ R
Sbjct: 1305 DLDGDIFLVSWCKALIPKATFKPYNYINTCA-LIKDKVLL--------SDIVNFYI--RH 1353
Query: 777 CPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVE 836
A + A+ D+F ++S LRL +I+ +D K+G
Sbjct: 1354 MKFYQLGQIAHSYLAMSDKFSIFNEKS-----------LRLSDIFNKNIDYV-KTGHITS 1401
Query: 837 VPEDLKVEKFPCYMRRDESVSFESTSVLGTIY 868
+PEDL ++P +M R S S+ ST +G +Y
Sbjct: 1402 IPEDLIPTEYPDFMER--SPSYYSTKAIGHLY 1431
>gi|358384596|gb|EHK22193.1| hypothetical protein TRIVIDRAFT_149633 [Trichoderma virens Gv29-8]
Length = 1731
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 62/120 (51%), Gaps = 10/120 (8%)
Query: 620 KKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILK---DGQ---VSWEKVLVYRNPGL 673
K+ Q ++ + +S L G D G+LK + + + DGQ + KVLV RNP L
Sbjct: 377 KRDEQKCRILIPKSRLLFGVCDAWGVLKPGQCAVKVTMDGDGQPYALKGMKVLVTRNPCL 436
Query: 674 HFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
H GD+ L EL V I FP G R AD ++GGD DGD +FV+ +P+++
Sbjct: 437 HPGDLQKLDVVERPELAHLVD----CIVFPTTGRRPTADMMSGGDLDGDTFFVTWDPDII 492
>gi|119196681|ref|XP_001248944.1| hypothetical protein CIMG_02715 [Coccidioides immitis RS]
Length = 1155
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 100/396 (25%), Positives = 169/396 (42%), Gaps = 58/396 (14%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P + Q+R KG + L+ +L + +++R SM+K A R FN +EV +
Sbjct: 607 PTVFQIRF----AGAKGMVSLDTRLKGEQLRLRESMVKFSARR------AFN-IEVCGSG 655
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVS--FNYGGMD 588
+ YL+ +I +L GVP F+ + D+ + S ++A K S +
Sbjct: 656 IRALPFYLNAQIIKILEDLGVPPTGFIKL---QSDEIERLLSVGKSASKTSQFLEESSIA 712
Query: 589 YDFTSARMI--LSGISL---DEPYLQH--RLSILMKEEKKSLQAGKLPVTESYYLMGTVD 641
+ +I L G+ +P+L+ +L+I K +A ++ V E+ L G +D
Sbjct: 713 KEVRVPWLIEILHGLGFHHDQDPFLRSVVQLAIFFKMRDLKYRA-RIRVPEAVTLYGIMD 771
Query: 642 PTGILKSNEV-CIILKD--GQ--VSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTS 696
TG L E+ C L + G+ + ++V+V R P LH GD+ KA V E
Sbjct: 772 ETGYLNEGEIFCTFLNEEGGREILVRDQVIVTRAPALHPGDVQYAKAVDVPENSPLRSLH 831
Query: 697 KYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLI 756
+ F +G R L ++GGD DGD+Y V + ER M AN +
Sbjct: 832 N-CVIFSQHGFRDLPSMLSGGDLDGDLYNVIYD----------ERLMPPCTYPPANYPKV 880
Query: 757 DFSL---EELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKEN 813
+ L E + ++ F+ F + A QA+ D+ + ++
Sbjct: 881 EEKLLDREVVRDDIIDFFVT--FMQQDQLGRIATIHQAIADQ---------RPAGTLDQD 929
Query: 814 MLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCY 849
L L ++ A+D KSGI V++ ++ K P Y
Sbjct: 930 CLLLAELHSVAVDF-SKSGIPVDL---TRIPKRPRY 961
>gi|340521489|gb|EGR51723.1| Hypothetical protein TRIREDRAFT_55637 [Trichoderma reesei QM6a]
Length = 1734
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 62/120 (51%), Gaps = 10/120 (8%)
Query: 620 KKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILK---DGQ---VSWEKVLVYRNPGL 673
K+ Q ++ + +S L G D G+LK + + + DGQ + KVLV RNP L
Sbjct: 377 KRDEQRCRILIPKSRLLFGVCDAWGVLKPGQCAVKVTMDGDGQPYALKGTKVLVTRNPCL 436
Query: 674 HFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
H GD+ L EL V I FP G R AD ++GGD DGD +FV+ +P+++
Sbjct: 437 HPGDLQKLDVVERPELAHLVD----CIVFPTTGRRPTADMMSGGDLDGDTFFVTWDPDII 492
>gi|392861850|gb|EAS37560.2| hypothetical protein CIMG_02715 [Coccidioides immitis RS]
Length = 1195
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 100/396 (25%), Positives = 169/396 (42%), Gaps = 58/396 (14%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P + Q+R KG + L+ +L + +++R SM+K A R FN +EV +
Sbjct: 607 PTVFQIRF----AGAKGMVSLDTRLKGEQLRLRESMVKFSARR------AFN-IEVCGSG 655
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVS--FNYGGMD 588
+ YL+ +I +L GVP F+ + D+ + S ++A K S +
Sbjct: 656 IRALPFYLNAQIIKILEDLGVPPTGFIKL---QSDEIERLLSVGKSASKTSQFLEESSIA 712
Query: 589 YDFTSARMI--LSGISL---DEPYLQH--RLSILMKEEKKSLQAGKLPVTESYYLMGTVD 641
+ +I L G+ +P+L+ +L+I K +A ++ V E+ L G +D
Sbjct: 713 KEVRVPWLIEILHGLGFHHDQDPFLRSVVQLAIFFKMRDLKYRA-RIRVPEAVTLYGIMD 771
Query: 642 PTGILKSNEV-CIILKD--GQ--VSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTS 696
TG L E+ C L + G+ + ++V+V R P LH GD+ KA V E
Sbjct: 772 ETGYLNEGEIFCTFLNEEGGREILVRDQVIVTRAPALHPGDVQYAKAVDVPENSPLRSLH 831
Query: 697 KYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLI 756
+ F +G R L ++GGD DGD+Y V + ER M AN +
Sbjct: 832 N-CVIFSQHGFRDLPSMLSGGDLDGDLYNVIYD----------ERLMPPCTYPPANYPKV 880
Query: 757 DFSL---EELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKEN 813
+ L E + ++ F+ F + A QA+ D+ + ++
Sbjct: 881 EEKLLDREVVRDDIIDFFVT--FMQQDQLGRIATIHQAIADQ---------RPAGTLDQD 929
Query: 814 MLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCY 849
L L ++ A+D KSGI V++ ++ K P Y
Sbjct: 930 CLLLAELHSVAVDF-SKSGIPVDL---TRIPKRPRY 961
>gi|443899804|dbj|GAC77133.1| RNA-directed RNA polymerase QDE-1 [Pseudozyma antarctica T-34]
Length = 1455
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 136/579 (23%), Positives = 232/579 (40%), Gaps = 88/579 (15%)
Query: 193 RFESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQR 252
R E+E ++L R++ +Q D + H+YH I T GP+++ + L R
Sbjct: 412 RIETEE-KRLKRQDAAQADLLEEQTNPTATAHVYHVTI-TPTRMLLDGPFMDASNRVL-R 468
Query: 253 ELGD--DNILLVKFDEELGGH----RSSNNWNDSYS----KYNEIAREGILVGLRCYHFF 302
D + + V F +E G R + DS S + + + GI + R +
Sbjct: 469 MFPDFGSHFVRVAFCDEDGDRFPVSRHDLDGIDSESFVRERIGDPLKYGIAIAGRKFEAL 528
Query: 303 VFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSS 362
+ G C+FV +AF D GK + +A + + S
Sbjct: 529 AWSGSGLGSHH---------CWFV----TAFTDK------VGK-LWDAERIRQALGNFRS 568
Query: 363 VANYMSRLSLILSK-------TMKLEVDFSRINIERIEDEPCRDK-DGNVVYKDGEALIH 414
+ Y +RL LS+ ++ +E D+ +E I DE + N +D + +
Sbjct: 569 IDRYPARLGARLSQAFSATSSSITIENDW----VEIIPDELSNAQMPSNGPERDRKYYLL 624
Query: 415 TDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLM 474
TDG G IS+ L ++ C E R+E + D R P +
Sbjct: 625 TDGVGQISKSLL----DEIWHALC------ETRGMRREWRLSQQDPRRI-------PSAI 667
Query: 475 QVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPR 534
Q R KG L LN L + + +R SMIK A + LEV S P
Sbjct: 668 QFRC----GGAKGVLCLNPTLKGKKMIMRESMIKFSAPK-------HRELEVAAHSFSPL 716
Query: 535 KTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMD------ 588
L+R LI L GV + FL++ +A++ A+ + + A ++ ++ D
Sbjct: 717 PARLNRPLINALEDLGVKDDVFLNLQASAVESAQEARKSFKRASQLMGSFAMSDAAEMHK 776
Query: 589 -YDFTSARMILSGISLDEPYLQHRL-SILMKEEKKSLQ-AGKLPVTESYYLMGTVDPTGI 645
+ + + + LD + HRL +I++ L+ ++PV + L+G VD
Sbjct: 777 LFRRLDSVIGMRPDELDPDSILHRLCTIVIAAALGDLKRKARIPV-QGCTLIGVVDEFNF 835
Query: 646 LKSNEVCIILKDG-----QVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAI 700
L+ ++ + D ++ KV+V R+P +H GD+ V+ A + +
Sbjct: 836 LERGQIFAQVNDRDQDEFRIVEGKVMVGRSPTIHPGDVRVVSAVKPPPGHPLLQLRNVIV 895
Query: 701 FFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKES 739
F R L ++GGD DGD+Y + + +L ES
Sbjct: 896 FSKSPFGRPLQSILSGGDLDGDIYTIYEDKDLFPTRTES 934
>gi|322712330|gb|EFZ03903.1| rna-dependent rna polymerase [Metarhizium anisopliae ARSEF 23]
Length = 1114
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 125/552 (22%), Positives = 217/552 (39%), Gaps = 129/552 (23%)
Query: 230 ISTKGNCTFKGPYLNQTRTHLQRELG-DDNILLVKFDEELG-----GHRSSNNWNDSYSK 283
+ T +GP L L+ G D+ L V F +E G G R+ N+ D +
Sbjct: 310 LVTPTRIVLRGPDLETKNRVLRMFPGKSDHFLRVTFGDEDGEDLSYGDRTCND--DIFEH 367
Query: 284 YNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILS 343
Y I G+ V R + F F +R S+ F ++
Sbjct: 368 YRRILLRGLTVAGRRFEFLAFSHSS-----------------LRSHSAWFCS---PFVGQ 407
Query: 344 GKTVHEARYM------FMHVRTVSSVANYMSRLSLILSKT-MKLEVDFSRINIERIEDEP 396
TV + R + F ++R + A +R+ S+T + L + I ++ I+D
Sbjct: 408 SLTVQDCRSIVKSLGVFQNIRIPAKCA---ARIGQAFSETPIALSLSQRGIRLQYIDD-- 462
Query: 397 CRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEAN 456
++ G V+ DG I D + + L P + + C
Sbjct: 463 VKNSAGTRVFSDGVGTISIDALQEVWDCL----PERLGRPTC------------------ 500
Query: 457 FSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRP-SMIKVKADRDL 515
+Q+R+ VKG L L+ +L + I IR SM+K K+
Sbjct: 501 -----------------IQIRI----AGVKGMLSLDSQLRGKYICIRSESMMKFKS---- 535
Query: 516 SDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKR 575
Q + L + ++P + L+R ++ +L G+ +FL A+ + V S+ R
Sbjct: 536 ---QDLDVLGICDVGSRPLRFTLNRQIVKILEDMGIHHNWFLAWQDKAIRNFLSVASSTR 592
Query: 576 N--ALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKE--------EKKSLQ- 624
+ A + G TS R+ L+E + +R ++ E + L+
Sbjct: 593 HTRAFLRQYEVG------TSLRLPELIEKLEENGIDYREDDFLRSVVGQAVLAELRFLKY 646
Query: 625 AGKLPVTESYYLMGTVDPTGILKSNEVCII--LKD--GQVSWE------KVLVYRNPGLH 674
++PV+++ L G +D TG L+ ++ + + D G E + LV R+P LH
Sbjct: 647 KARIPVSKAVTLFGVMDETGFLQEGQIYVTYDVADHLGATGIEAAPAKGRALVTRSPALH 706
Query: 675 FGDIHVLKATYVKELEDFVGTS----KYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNP 730
GDI YV+ + G + + I F G R L ++GGD DGD+Y V +P
Sbjct: 707 PGDIQ-----YVEMVTPPFGHALLELRNCIVFSSQGSRDLPSMLSGGDLDGDLYSVIWDP 761
Query: 731 ELL--KHFKESE 740
+ + ++ K +E
Sbjct: 762 DAIPTRNLKPAE 773
>gi|4768840|gb|AAD29638.1|AF117611_1 DosA protein [Dictyostelium discoideum]
Length = 1069
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 129/295 (43%), Gaps = 45/295 (15%)
Query: 459 DVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADR---DL 515
++ +++Y Q+RL KG L+LN+ + ++QIRPSM K + D L
Sbjct: 26 ELINQQNNYNSSTCAYQIRL----GGSKGVLVLNENIDEMSLQIRPSMSKFELDYKSGQL 81
Query: 516 SDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKR 575
G +LE+V S R L+R I LLS GV + FL +L L+ N +
Sbjct: 82 DGGHK--TLEIVSASTTSR-CKLNRQAITLLSNAGVEDSTFLQMLEVELN------QNAQ 132
Query: 576 NALKVSFN---YGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGK----L 628
+ V+ + G T + ++ Y++ SIL+K K L + +
Sbjct: 133 TLVDVNLSKELLGDFFQHITEYEL------FNDYYIR---SILLKLYKSKLIKIQDKCWI 183
Query: 629 PVTESYYLMGTVDPTGILKSNEVCIILKD---------GQVSWEKVLVYRNPGLHFGDIH 679
V ES L+G D +G L + V I +++ +V +V V +NP H GD+
Sbjct: 184 EVKESRNLLGVCDTSGTLPEDTVYIEVEELDPIDNLMKPKVIIGRVAVLKNPCHHPGDVR 243
Query: 680 VLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLK 734
LKA L + +FF NG + +G D DGD YFV + L++
Sbjct: 244 FLKAIDHPPL----NGKRNVLFFSTNGMVPNFKQCSGSDLDGDRYFVIYDQTLIR 294
>gi|303322200|ref|XP_003071093.1| RNA-directed RNA polymerase, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240110792|gb|EER28948.1| RNA-directed RNA polymerase, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 1195
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 127/277 (45%), Gaps = 30/277 (10%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P + Q+R KG + L+ +L + +++R SM+K A R FN +EV +
Sbjct: 607 PTVFQIRF----AGAKGMVSLDTRLKGEQLRLRESMVKFSARR------AFN-IEVCGSG 655
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVS--FNYGGMD 588
+ YL+ +I +L GVP F+ + D+ + S ++A K S +
Sbjct: 656 IRALPFYLNAQIIKILEDLGVPPTGFIKL---QSDEIERLLSVGKSASKTSQFLEESSIA 712
Query: 589 YDFTSARMI--LSGISL---DEPYLQH--RLSILMKEEKKSLQAGKLPVTESYYLMGTVD 641
+ +I L G+ +P+L+ +L+I K +A ++ V E+ L G +D
Sbjct: 713 KEVRVPWLIEILHGLGFHHDQDPFLRSVVQLAIFFKMRDLKYRA-RIRVPEAVTLYGIMD 771
Query: 642 PTGILKSNEV-CIILKD--GQ--VSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTS 696
TG L E+ C L + G+ + ++V+V R P LH GD+ KA V E
Sbjct: 772 ETGYLNEGEIFCTFLNEEGGREILVRDQVIVTRAPALHPGDVQYAKAVDVPENSPLRSLH 831
Query: 697 KYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
+ F +G R L ++GGD DGD+Y V + L+
Sbjct: 832 N-CVIFSQHGFRDLPSMLSGGDLDGDLYNVIYDERLM 867
>gi|240276859|gb|EER40370.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus H143]
Length = 1240
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 129/278 (46%), Gaps = 29/278 (10%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P + Q+RL KG + L+ + +++ +RPSMIK L + ++E+ +
Sbjct: 610 PTVFQIRL----AGAKGMISLDSRKKGKSLVLRPSMIKFH----LPNSYNAFNIEICGSG 661
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYG----- 585
+P +L+ LI +L GV + FL + + + R ++ A + +
Sbjct: 662 LKPLPFFLNAQLIKILEDLGVDDSVFLRLQADEISRLRATATSTAKAARFLEDTNIAKSV 721
Query: 586 GMDYDFTSARMILSGISL---DEPYLQH--RLSILMKEEKKSLQAGKLPVTESYYLMGTV 640
G+ + IL G L ++ +L+ L++L+K +A ++ V + L G +
Sbjct: 722 GLPWLIN----ILEGFGLRHSNDEFLRRVMELAVLIKLRDLKYRA-RIRVPNAVTLFGIM 776
Query: 641 DPTGILKSNEV-CIILKDGQVSW----EKVLVYRNPGLHFGDIHVLKATYVKELEDFVGT 695
D TGILK EV C L D V +V+V R+P +H GD+ + +A V + +
Sbjct: 777 DETGILKEGEVFCTSLSDKGVREVLVNPRVVVTRSPAMHPGDVQIARAVDVPA-DSPLRQ 835
Query: 696 SKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
I F +G R L ++GGD DGD+Y V + LL
Sbjct: 836 LHNCIAFSQHGHRDLPSMLSGGDLDGDLYNVIFDNTLL 873
>gi|328874858|gb|EGG23223.1| RNA-directed RNA polymerase [Dictyostelium fasciculatum]
Length = 2645
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 170/771 (22%), Positives = 293/771 (38%), Gaps = 175/771 (22%)
Query: 239 KGPYLNQTRTHLQ-----------RELGDDNILLVKFDEELGGHRSSNNWNDSYSKYN-- 285
K Y+ TRT Q R G DN LLV F EE + YSK+
Sbjct: 1093 KNVYITPTRTLFQKPSMYQLNRALRRYGADNFLLVHFVEENLDEKVE------YSKFQTK 1146
Query: 286 ---EIAREGILV-GLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYI 341
I EGI++ G+ +H+ G + + S C+F +
Sbjct: 1147 SIENILLEGIMIEGIGRFHYI----GNSASQARSSS-----CWFTNNRND---------- 1187
Query: 342 LSGKTVHEARYMFMHVRTVSSVAN---YMSRLSLILSKTMKLEVDFSRINIERIEDEPCR 398
+ R + + + +AN Y+ L L+ S T + + E ++D
Sbjct: 1188 -----IDTIRNQLVDLSINTGIANPRKYLRSLGLVFSGTTPSIIIPNNQYNENLDD---- 1238
Query: 399 DKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFS 458
++ EA I T+G GFI ++LA K + A S
Sbjct: 1239 -------VRNDEA-IFTEGIGFIGKNLANK------------------------INAENS 1266
Query: 459 DVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDG 518
T S+ Q+R+ N KG + ++ + I +R SM K + +
Sbjct: 1267 FPLGTSSY--------QIRIGGN----KGVVSVHHSIE-NGIYLRNSMKKFNTN----NS 1309
Query: 519 QTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVF---SNKR 575
+ +LE++ +++ T L+R +I L GVP+ FL ++ L+ + S R
Sbjct: 1310 EMNRTLEIISIASKKNCT-LNRQIINLFGGLGVPDRLFLMLVMECLEKLALILQDSSMAR 1368
Query: 576 NALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEE-KKSLQAGKLPVTESY 634
+ LK + DF + L +P ++ L L K++ K L +P+ +
Sbjct: 1369 SELK--------NIDFFNQSEPTEKELLYDPLIRRILHTLYKKQLTKYLDFCFIPIKNAR 1420
Query: 635 YLMGTVDPTGILKSNEVCI-ILKDGQ---VSWEKVLVYRNPGLHFGDIHVLKATYVKELE 690
L+G +D TG L+ N+V + I D V V V +NP LH GD+ + + L
Sbjct: 1421 TLLGVIDETGTLEENQVFVRITADNNEIIVIQSNVAVVKNPCLHPGDVQLAMGVDNQLLH 1480
Query: 691 DFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWM------- 743
+ + F G L + +G D DGD YFV + +++ + + +
Sbjct: 1481 HMLD----VVVFSQKGTIPLFSKCSGSDLDGDRYFVCFDTDMVNTIVQHKDFCNLPSKSD 1536
Query: 744 STSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAAD-CWQAVMDRFLTLGDE 802
ST K ++ + + F + L ++ L + S+ KS D + ++ F +
Sbjct: 1537 STVKEINKDTVIQQFIENTQKGRLGQIAL-SHLAISDYKSPTDDLAIELAIEHFKEVDFV 1595
Query: 803 SAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVS---FE 859
+ E L L N ++P +M+ + E
Sbjct: 1596 KTNIHGTVPEQALELTNY----------------------GRRYPMFMKASVGANKEFSE 1633
Query: 860 STSVLGTIYNTVKSYEAV-----DRSVTEIWKLPCFDDGVPEACMTKWKGYYDQYRWEMK 914
ST VLG IYN S +V D V E + ++D V +A + + Y+ E++
Sbjct: 1634 STKVLGKIYNQCSSLVSVAQYLPDSRVDESILVSGYEDYVEDA-----RHQFKNYKKEIR 1688
Query: 915 EAIDKCTVEREEAAELVIEKYKQILYGAAEFEQSTRTLEEIYNE--ALAIY 963
K +E+EE +I Y + + S +E+ YN+ LA++
Sbjct: 1689 YLRSKYNIEKEED---IISSYMDNSMSGSSY--SKNIVEDAYNQFSVLAVH 1734
>gi|258570921|ref|XP_002544264.1| predicted protein [Uncinocarpus reesii 1704]
gi|237904534|gb|EEP78935.1| predicted protein [Uncinocarpus reesii 1704]
Length = 1348
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 139/568 (24%), Positives = 198/568 (34%), Gaps = 133/568 (23%)
Query: 228 CHISTKGNCTFKGPYLNQTRTH-LQRELGDDNIL------LVKFDEELGGH-----RSSN 275
CH S G F L R H R G D + LVK E L +S
Sbjct: 508 CHKSEPGYLKFALKPLRLERGHRFARRFGSDRFMEITFPALVKSPEYLKNKGTVVLQSIA 567
Query: 276 NWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFID 335
W + S Y ++G R + F +D + KK P + K + ++ S F+
Sbjct: 568 TWLATRSHY--------ILG-RTWRAFYLEDVKSKNKKDGPRS---KVHLFAVDGSDFLK 615
Query: 336 MGYQYILSGKTVHEARYMFMHVRTV------------SSVANYMSRLSLILSKTMKLEVD 383
G+ H R+ M V + RLSL LS+T+ V
Sbjct: 616 APSTISPIGEVSH--RHTPMSVEALVDWHIPFKYNKRQKDCKLFQRLSLALSRTIPTVV- 672
Query: 384 FSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDS 443
+ RI R KD +V DG AL+ I L LK
Sbjct: 673 ---VRPGRI----VRRKDAEIVMNDGCALMSASLANEIKSCLGLK--------------- 710
Query: 444 TERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLP--PQTIQ 501
E P Q R+ KG +++ I+
Sbjct: 711 ------------------------DENPSCFQGRI----AGAKGIWMVDNADSNGDSWIE 742
Query: 502 IRPSMIKVKADRD-----LSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFF 556
I S +K+K L D Q + EVV S + R L+ L+ +L +GGV
Sbjct: 743 ISDSQLKIKPHPSKCKIMLDDYQL--TFEVVSWSRELRPVNLNVQLLMVLQHGGVQTDRL 800
Query: 557 LDILRNALDDARGVFSNKRNALKVSFNY----GGMDY-------DFTSARMILSGISLDE 605
+++R F N VS + G D DF + + + LD
Sbjct: 801 KELVRRESSAWYADFKNTITNEIVSRGWIQKQGLYDRRKTRRIDDFPTENAEQAILLLDS 860
Query: 606 -------PYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDG 658
YL+ L+ +K+ L + K+ + ES Y DP +L +EV
Sbjct: 861 GFHPLRLAYLKELLTTFLKDYCNRLDSLKIRIPESTYAYCIADPYEVLAEDEVHFGFSK- 919
Query: 659 QVSWEK----------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPR 708
WE VL+ RNP DI +A + KEL F K I FP G
Sbjct: 920 --PWESYGYTDLDGVDVLLGRNPAHLPNDIQKRRAVFKKELRHF----KDVIVFPTVGKV 973
Query: 709 SLADEIAGGDFDGDMYFVSRNPELLKHF 736
LA ++GGD+DGD +V +PEL+ F
Sbjct: 974 PLAGMLSGGDYDGDQVWVCWDPELVNTF 1001
>gi|225554768|gb|EEH03063.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus G186AR]
Length = 1240
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 129/278 (46%), Gaps = 29/278 (10%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P + Q+RL KG + L+ + +++ +RPSMIK + FN +E+ +
Sbjct: 610 PTVFQIRL----AGAKGMISLDSRKKGKSLVLRPSMIKFHLPHSYN---AFN-IEICGSG 661
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYG----- 585
+P +L+ LI +L GV + FL + + + R ++ A + +
Sbjct: 662 LKPLPFFLNAQLIKILEDLGVDDSVFLRLQADEISRLRATATSTAKAARFLEDTNIAKSV 721
Query: 586 GMDYDFTSARMILSGISL---DEPYLQH--RLSILMKEEKKSLQAGKLPVTESYYLMGTV 640
G+ + IL G L ++ +L+ L++L+K +A ++ V + L G +
Sbjct: 722 GLPWLIN----ILEGFGLRHSNDEFLRRVMELAVLIKLRDLKYRA-RIRVPNAVTLFGIM 776
Query: 641 DPTGILKSNEV-CIILKDGQVSW----EKVLVYRNPGLHFGDIHVLKATYVKELEDFVGT 695
D TGILK EV C L D V +V+V R+P +H GD+ + +A V + +
Sbjct: 777 DETGILKEGEVFCTSLSDKGVREVLVNPRVVVTRSPAMHPGDVQIARAVDVPA-DSPLRQ 835
Query: 696 SKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
I F +G R L ++GGD DGD+Y V + LL
Sbjct: 836 LHNCIAFSQHGHRDLPSMLSGGDLDGDLYNVIFDNTLL 873
>gi|409046080|gb|EKM55560.1| hypothetical protein PHACADRAFT_173707 [Phanerochaete carnosa
HHB-10118-sp]
Length = 876
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 113/483 (23%), Positives = 194/483 (40%), Gaps = 90/483 (18%)
Query: 230 ISTKGNCTFKGPYLNQTRTHLQRELGDDNILL-VKFDEELGGHRSSNNWNDS----YSKY 284
I T +GP+L Q +++ + + L V+F +E S D ++++
Sbjct: 420 IVTPSTVRLEGPFLEQCNRVIRKYARNTSCFLRVRFADEARLQFRSEREVDCRAFIHNRF 479
Query: 285 NEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVR-MESSAFIDMGYQ---- 339
+ R G+++ R +HF + +E +FVR + A G
Sbjct: 480 GNVLRRGLVIAGRHFHFLGYTQASLKEHTA---------WFVRSFKQPAVTSDGTSCEET 530
Query: 340 ----YILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKT-MKLEVDFSRINIERIED 394
I++G V + + + A Y +R + S T + +D +IE +ED
Sbjct: 531 VTADTIIAGLGVFDG--ILYDPELIMCPARYGARQAQCFSSTSASVTIDLD--DIEVVED 586
Query: 395 EPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELE 454
+V DGE TDG G IS +LA + ++ C
Sbjct: 587 ---------IVDADGERSF-TDGVGTISPNLAAE----IWTRLCAAS------------- 619
Query: 455 ANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRD 514
R S G P Q+R+ KG + ++ L + + +RPSMIK A
Sbjct: 620 ------GRPPSERG--PRRFQIRI----QGAKGMVSVDHLLQGRKLCLRPSMIKFYA--- 664
Query: 515 LSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLS----YGGVPEIFFLDILRNALDDARGV 570
+D +T LE+ +P K YL+R L+ LL GG + FL + ++
Sbjct: 665 -ADSRT---LEIADAFVKPSKFYLNRPLVMLLEELDILGGYDFLKFLQ--ESVVEKTEAA 718
Query: 571 FSNKRNALKVSFNYG-GMDYDFTSARMILS--GI-SLDEPYLQHRLSILMKEEKKSLQ-A 625
+ A + ++ G YD ++ L GI +LD+ + Q L + L+
Sbjct: 719 VQSLYAAADLFDDFNLGRTYDLSNVFRELHHMGIATLDDTFSQQVLCFGRHHVLRDLKYR 778
Query: 626 GKLPVTESYYLMGTVDPTGILKSNEV--CIILKDGQVS---WEKVLVYRNPGLHFGDIHV 680
++PV + L+G D G L+ E+ C+I +GQ L+ R+P +H GD+ V
Sbjct: 779 ARIPVPSGWNLVGVADIHGCLEEGEIFACVIPYEGQEPIYLHGPTLISRSPVIHRGDVQV 838
Query: 681 LKA 683
++A
Sbjct: 839 VRA 841
>gi|241244478|ref|XP_002402311.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
gi|215496312|gb|EEC05952.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
Length = 519
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 113/440 (25%), Positives = 172/440 (39%), Gaps = 86/440 (19%)
Query: 469 EPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTI-QIRPSMIKVKADRDLSDGQTFNSLEVV 527
E P +Q+R Y G KG L +N +LP Q + +RPSM K + + LEVV
Sbjct: 82 ERPSAIQIR--YAGA--KGMLCINPELPNQKLLYLRPSMQKFPC-------TSSDYLEVV 130
Query: 528 KTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGM 587
K S PRK + + + LD R + G +
Sbjct: 131 KVS-APRKLHTPLGRV------------------HYLDSDRTIHQVSGEYHLEELGLGCI 171
Query: 588 DYDFTSARMILSGIS-LDEP-YLQHRLSILMKEEKKSLQ-------AG-------KLPVT 631
D +RM+ + ++ L +P Y+ I++ AG LPV
Sbjct: 172 KDDAIMSRMVSTAMAVLTKPRYIISSCDIMVSCSCTMFNLVVVLHAAGLRYKTRIALPVD 231
Query: 632 ESYYLMGTVDPTGILKSNEVCIILKD------------GQVSWEKVLVYRNPGLHFGDIH 679
+ ++G VD TG+L+ +V + + +V +VLV + P LH GD+
Sbjct: 232 RARNMLGVVDTTGVLRYGQVFVQCSEMGARASQQGPPKCRVITGQVLVTKCPCLHPGDVR 291
Query: 680 VLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKES 739
A L V I FP G R DE+AG D DGD Y V P LL F
Sbjct: 292 KFTAIDEPRLHHVVD----CIVFPGQGHRPHPDEMAGSDLDGDEYIVIWEPSLL--FP-- 343
Query: 740 ERWMSTSKNLSANKRLIDFSLEELESELFKLFLN--TRFCPSNAKSLAADCWQAVMDRFL 797
NK+ ++FS E E ++ +N +F + K+ D + + L
Sbjct: 344 ----------GYNKQPMNFSDRNPEPERGEITINDMIQFLCNYIKN---DSIGILSNAHL 390
Query: 798 TLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRR-DESV 856
D+ EE+ L + LD KSG + + + +P +M + +
Sbjct: 391 AWADQ--EEEGIYSRRCLAIAEKISICLDF-AKSGRTAYLRREERPMFYPDFMEKGSHKI 447
Query: 857 SFESTSVLGTIYNTVKSYEA 876
S+ S VLG +Y T +S EA
Sbjct: 448 SYRSDRVLGLLYRTCRSLEA 467
>gi|389741441|gb|EIM82629.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1527
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 132/300 (44%), Gaps = 38/300 (12%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTI---QIRPSMIKVKADRDLSDGQTFNSLEVV 527
P + Q+R Y G KG +L+ L I + R S K A +D F+ ++
Sbjct: 165 PCVFQIR--YRG--YKGVQMLHPPLDAAKIHQAEFRKSQKKFTA----TDDMIFSIVDYS 216
Query: 528 KTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGM 587
K R L+ + LLS GV F+ + + D + S+ +A ++ G
Sbjct: 217 KPHTFGR---LNNEITILLSSLGVTNDDFVALQQEYFDWVQRASSDPVHAFELFSTLGKH 273
Query: 588 DYDFTSARMILSGISLDEPYLQHRL--------SILMKEEKKSLQAGKLPVTESYYLMGT 639
D + R++L G LD P + ++ KE + + ++ + +S L G
Sbjct: 274 D---IAERVLLDG--LDSPTIVKQIRSAQAAEIQAFHKEGDATKERVRMLIRKSRRLFGV 328
Query: 640 VDPTGILKSNEVCI---ILKDGQ--VSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVG 694
DP G+LK +V + + + G ++ V+V RNP LH GDI L+A +L V
Sbjct: 329 CDPFGVLKEGQVHVRITVSRAGASTINHLDVIVVRNPCLHPGDILKLRAVDHPQLSHLVD 388
Query: 695 TSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL-KHFKESERWMSTSKNLSANK 753
+ FP G R+ +GGD DGD YFV +P L+ K ES + +K + NK
Sbjct: 389 ----CVVFPSVGKRAAPSMSSGGDLDGDEYFVCWDPRLVPKKISESYTY-PPNKEFTQNK 443
>gi|258569467|ref|XP_002543537.1| predicted protein [Uncinocarpus reesii 1704]
gi|237903807|gb|EEP78208.1| predicted protein [Uncinocarpus reesii 1704]
Length = 1004
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 119/272 (43%), Gaps = 42/272 (15%)
Query: 484 AVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLI 543
KG + L+ +L +++R SMIK KA FN +E+ + + YL+ LI
Sbjct: 653 GAKGMVSLDSRLKGDQLKLRESMIKFKAK------GAFN-IEICGSGTRALPFYLNAQLI 705
Query: 544 ALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISL 603
+L GV F+D+ + +D R V +++ +K F I G+ L
Sbjct: 706 KVLEDLGVRPSAFIDLQTDEIDRLRSV---EKSVIKAG--------QFLEQTNIAQGVRL 754
Query: 604 ---------------DEPYLQH--RLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGIL 646
+P+L+ +L++ +K +A ++ V + L G +D +G L
Sbjct: 755 PWLIQVIRGLELHHDQDPFLRSVIQLAVFLKMRDLKYRA-RIRVPNAVTLYGIMDESGYL 813
Query: 647 KSNEV-CIILKDGQVS----WEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIF 701
K E+ C L +G V ++++V R+P LH GD+ A V +
Sbjct: 814 KEGEIFCTFLTEGGVREILVRDRIIVTRSPALHPGDVQFANAVDVPATSPLRKLHN-CVV 872
Query: 702 FPCNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
F +G R L ++GGD DGD+Y + + L+
Sbjct: 873 FSQHGQRDLPSMLSGGDLDGDLYNIIYDERLM 904
>gi|330798142|ref|XP_003287114.1| hypothetical protein DICPUDRAFT_54684 [Dictyostelium purpureum]
gi|325082892|gb|EGC36360.1| hypothetical protein DICPUDRAFT_54684 [Dictyostelium purpureum]
Length = 2341
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 104/449 (23%), Positives = 184/449 (40%), Gaps = 85/449 (18%)
Query: 466 HYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLE 525
HY Q+R+ KG L++++ + P + IR S IK K + +T
Sbjct: 1353 HYKSSTCAYQIRI----GGAKGMLVVSETVDPDGVYIRKSQIKTKPAH-YDEHRTLEICS 1407
Query: 526 VVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKV----- 580
+ +SN L+R +IALLS GV + F I ++ ++ + KV
Sbjct: 1408 ISTSSN----CKLNRQVIALLSCKGVKDHVFYSIQDRYMNYLASTLNDVEYSRKVLDEFF 1463
Query: 581 -SFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGT 639
N + D R++++ ++LSI +++ Q L + +S L+G
Sbjct: 1464 KDLNDNELLQDNFIRRILIT---------HYKLSI-----ERAQQKSHLDIEKSRNLLGV 1509
Query: 640 VDPTGILKSNEVCIILK------DGQVSW----EKVLVYRNPGLHFGDIHVLKATYVKEL 689
DPT +L ++ CI ++ DG + V+V +NP H GD+ +L+A ++ L
Sbjct: 1510 TDPTRLLPAD--CIFIQIEQEEEDGSRHYVPLKGDVVVTKNPCTHPGDLRILRAVNIEAL 1567
Query: 690 EDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL------KHFKESERWM 743
K I F G EI+G D DGD YFV + +L+ + ++
Sbjct: 1568 HHL----KDVIVFSTYGNVPNFKEISGSDLDGDRYFVCFDNDLMINGNSIPYLGDNLTKE 1623
Query: 744 STSKNLSAN-KRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDE 802
+N+ + K L+ L +E + N S+ AD A+ L E
Sbjct: 1624 DPPQNVYNDPKLLVGQYLANVEKQKIGTLYNAHLAISDY--YGADSVHAI-----ELSIE 1676
Query: 803 SAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVE----KFPCYMRRDESVS- 857
+E A+ K+G+ EVP +++ +P YMRRD++
Sbjct: 1677 CFKEIDAV-------------------KTGVHGEVPRNIQFHLNHFGYPHYMRRDDNSPK 1717
Query: 858 --FESTSVLGTIYNTVKSYEAVDRSVTEI 884
++S V G +++ ++ + + EI
Sbjct: 1718 KYYQSKKVQGLMFDQLEQLVYIGDFLPEI 1746
>gi|171681273|ref|XP_001905580.1| hypothetical protein [Podospora anserina S mat+]
gi|170940595|emb|CAP65823.1| unnamed protein product [Podospora anserina S mat+]
Length = 1721
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 116/457 (25%), Positives = 176/457 (38%), Gaps = 112/457 (24%)
Query: 316 PSTSPVKC--YFVRMESSAFIDMGYQYILSGKTVHE--ARYMFMHV-------RTVSSVA 364
PST P +C Y +R+ + G Y G + + +R F + R V+ +
Sbjct: 112 PST-PRECTDYAIRLLRTGISIQGVHYNFYGHSNSQLKSRTCFFYAGSPEEISRKVNDLG 170
Query: 365 NYMSRLSLILSKTMKLEVDFSR------INIERIEDEPCRDKDGNVVYKDGEALIHTDGT 418
++ S++ + K ++ + FS I ER+ED P ++ D I TDG
Sbjct: 171 DF-SKMKTVAKKAKRISLLFSTGSVAMLIPPERVEDIP------DIETAD---YIFTDGC 220
Query: 419 GFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRL 478
G IS +LA +EL + R + P + Q+R
Sbjct: 221 GLISPNLA------------------------RELARRDRIIFRNRRYT---PSVFQIR- 252
Query: 479 FYNGTAVKGTLLLNKKLP----------PQTIQIRPSMIKVKADRDLSDGQTFNSLEVVK 528
Y G KG + +++ +P P +++R SM K D S VV+
Sbjct: 253 -YRG--YKGVVEVDQTMPRPKNKSSDAPPIWLKLRKSMKKFSGGDDYS-------FSVVE 302
Query: 529 TSNQPRKTYLSRNLIALLSYGGVPEIFF-------LDILRNALDDARGVFSNKRNALKVS 581
S YL+ I LLS G+ F L A D R F
Sbjct: 303 YSKPYTYGYLNDESILLLSALGITHKTFHQKQNEHFQFLEEATRDPRAAFR--------F 354
Query: 582 FNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEE------KKSLQAGKLPVTESYY 635
+Y M A IL +++ + Q ++ L+K E K+ Q ++ + +S
Sbjct: 355 LSYANMP---EMAEKILMADNVE--HAQSKVKALVKAEYGKMLNKRDDQKCRILIPQSRL 409
Query: 636 LMGTVDPTGILKSNEVCI---ILKDGQVSWEK---VLVYRNPGLHFGDIHVLKATYVKEL 689
L G D LK E + + +DGQ + K VLV RNP LH GD+ + EL
Sbjct: 410 LFGVCDAWDCLKEGECAVKVTLFEDGQPAALKGMEVLVTRNPCLHPGDMQKFRVVERPEL 469
Query: 690 EDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFV 726
I F G R AD ++GGD DGD +FV
Sbjct: 470 AHLTD----CIVFSSRGRRPAADLMSGGDLDGDTFFV 502
>gi|409046075|gb|EKM55555.1| hypothetical protein PHACADRAFT_161565 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1108
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 151/722 (20%), Positives = 262/722 (36%), Gaps = 151/722 (20%)
Query: 200 EKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGP-----------YLNQTRT 248
+ L R NI M L+ YH + T +GP Y T
Sbjct: 298 DALARANILDLQEIMRLRTPLLYFECYHAKV-TPSRLLLEGPFPERCNRVVRKYAGHTSN 356
Query: 249 HLQRELGDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGG 308
L+ D+N L +FD ++ G ++ ++ + EG+ + R + F +
Sbjct: 357 FLRVSFMDENRLQYRFDRDVDG------YDFIRKRFGTLLFEGLWIAGRHFKFLAYSQSA 410
Query: 309 KEEKKKDPSTSPVKCYFVR----MESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVA 364
+ +FVR E+ + + I++G + R + + + A
Sbjct: 411 LKNHS---------VWFVRDFTAHENGTEVHVTVDSIIAGLGIF--RNVPQDLELMRCPA 459
Query: 365 NYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISED 424
Y +R++ + T +ED D +G + TDG G +S++
Sbjct: 460 RYGARVAQAFTTTEAAVEVEVEEVFP-VED--MMDPNGYRSF--------TDGIGLVSQE 508
Query: 425 LALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGE-PPLLMQVRLFYNGT 483
LA ++ + + YG P Q+R
Sbjct: 509 LA------------------------ADIWGALQEKSVRHRRYGRCMPRAFQIRF----Q 540
Query: 484 AVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLI 543
KG L ++ L + + +R SM K +A ++ +EV N+P + YLSR L
Sbjct: 541 GFKGMLSVDHNLSGRAVCLRLSMKKFEAPESMT-------IEVASAFNKPGRLYLSRPLT 593
Query: 544 ALLSYGGVPEIF--FLDILRNALDDARGVFSNKRNALKVSFNYG-GMDYDFTSARMILSG 600
LL V F F + + D + + R A + YG G + +S + L+
Sbjct: 594 MLLEGLKVRGGFGIFKTLQDAVIKDTKEATRSFRQAATLWEAYGLGTAFKLSSIFLDLAK 653
Query: 601 I---SLDEPYLQHRLSILMKEEKKSLQ-AGKLPVTESYYLMGTVDPTGILKSNEVCIILK 656
++++P+L L + + L+ ++PV + Y L+G D G LK E+ +
Sbjct: 654 FGSEAIEDPFLLQCLKFGIYHILRDLKYHARIPVPKGYSLVGVADIHGYLKEGEIFACVA 713
Query: 657 DGQVSWEKVLVYRNPGLHFGDIHVLKAT------YVKELEDFVGTSKYAIFFPCNGPRSL 710
SW + H GD+ V A V + E T + F G R L
Sbjct: 714 Q---SWSSTI-------HPGDVQVATAIGRPPPGTVFDEEPLTNT----VVFSTRGTRPL 759
Query: 711 ADEIAGGDFDGDMYFVSRNPELL-------KHFKESERWMSTSKNLSANKRLIDFSLEEL 763
A ++GGD DGD++ ++ LL + ++R T + S + + DF LE
Sbjct: 760 ASCLSGGDLDGDVFMLTTLEGLLPTEIYEPAEYASAQR--KTVPHTSTRRDVADFILEYF 817
Query: 764 ESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYD 823
S+ + +++ +L D+S ++ E L L ++ D
Sbjct: 818 YSDNIGMIVSS---------------------WLVQADQS--DQGIFDEACLTLAELHSD 854
Query: 824 ALDAPKKSGIKVEVPEDLKVEKFPCY----MRRDESVSFESTSVLGTIYNTVKSYEAVDR 879
A D PK + + K P Y M+ D S E LG Y + +S + R
Sbjct: 855 AADYPKTG-------NPVSMRKVPRYALPTMKPDWSAP-EIQDRLGLFYQSQRSIGRLYR 906
Query: 880 SV 881
V
Sbjct: 907 EV 908
>gi|407919378|gb|EKG12628.1| RNA-dependent RNA polymerase eukaryotic-type [Macrophomina phaseolina
MS6]
Length = 1485
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 75/155 (48%), Gaps = 20/155 (12%)
Query: 599 SGISLDEPYLQ---HRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIIL 655
SG + YL HRL L K + Q ++P+ Y+ G DP G+LK E+ +
Sbjct: 906 SGFDISCDYLADVAHRL--LAKSLRLLRQNIRVPLPRCTYIKGVADPLGVLKPGEIHVHF 963
Query: 656 KD---GQVSWE--------KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPC 704
+VS + VLV RNP L DI +++T+ L G K + FP
Sbjct: 964 TRRFVDEVSGDCLSYLNNRNVLVARNPALRASDIQKVRSTFNLRL----GHLKDVVVFPT 1019
Query: 705 NGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKES 739
G LA ++ GGD+DGD +++ PE+++ FK +
Sbjct: 1020 RGTFPLAGKLQGGDYDGDTFWICWEPEMVEPFKNA 1054
>gi|443927204|gb|ELU45719.1| RNA-directed RNA polymerase [Rhizoctonia solani AG-1 IA]
Length = 1713
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 129/290 (44%), Gaps = 40/290 (13%)
Query: 467 YGEPPLLMQVR-----LFYNGTA--VKGTLLLNKKL---PPQTIQIRPSMIKVKADRDLS 516
Y P ++Q+R + +N T ++G L ++ +L + R SM K+K D
Sbjct: 209 YRYTPSVIQIRAVCSFVSHNVTILIIQGVLAIHPQLDQAAQHHVHFRDSMRKLKTGAD-- 266
Query: 517 DGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRN 576
N+ VV S + L+ ++I LLS G+ ++L+ D +
Sbjct: 267 -----NTFSVVDYSKPYQFARLNNDIIVLLSALGITN----EMLKTKQDAYFKWIESANK 317
Query: 577 ALKVSFNY-GGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQA-------GKL 628
+ + N+ + D + R+ + G LDE +Q ++ EE + Q ++
Sbjct: 318 DMSSAMNFLSALGKDDLAERVFMDG--LDEEQVQAQIRNAQVEEVNAFQKPETGKDRSRI 375
Query: 629 PVTESYYLMGTVDPTGILKSNEVCIIL---KDGQVSWEKV--LVYRNPGLHFGDIHVLKA 683
+ +S +L G DP G+L+ EV + + + G + + +V RNP LH GDI L+A
Sbjct: 376 FLLQSRFLFGVCDPYGLLEEGEVHVRIMEPRKGATTLSNIDLMVVRNPCLHPGDILKLRA 435
Query: 684 TYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
+ L+ V I F G R+ +GGD DGD + V +P+++
Sbjct: 436 VHHTGLDHLVD----CIVFSGKGKRAAPAMSSGGDLDGDRFTVVWDPDIV 481
>gi|393235346|gb|EJD42902.1| RNA-directed RNA polymerase [Auricularia delicata TFB-10046 SS5]
Length = 1654
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 122/278 (43%), Gaps = 36/278 (12%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQ---TIQIRPSMIKVKADRDLSDGQTFNSLEVV 527
P + Q+R Y G KG L+L+ +L Q R SM K A D ++ VV
Sbjct: 205 PSVFQIR--YRG--YKGVLMLHPELDRSHGPLAQFRRSMKKFNATLD-------DTFTVV 253
Query: 528 KTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGM 587
S L+ ++I L+S G+ L D S+ A+ + G
Sbjct: 254 GYSTPYAFGRLNNDVIVLISSLGITNETLLAKQAEYFDWLLRAVSDVSCAVDLLSCLG-- 311
Query: 588 DYDFTSA-RMILSGISLDEPYLQHRLSILMKEEKKSLQA------GKLPVTESYYLMGTV 640
DF A R++L G LD ++Q L+ ++ E KS + ++ + +S L G
Sbjct: 312 --DFAMAERVLLDG--LDADHVQKALAGIVSREVKSFRKDNGRLRSRMIIRKSRLLFGVC 367
Query: 641 DPTGILKSNEVCIILKDGQ-----VSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGT 695
DP G+L+ EV + + G+ ++ VLV +NP LH GD+ L A L V
Sbjct: 368 DPFGVLREGEVHVRVSAGRQPATTLTHCDVLVVKNPCLHPGDVLKLHAVENPRLAHLVD- 426
Query: 696 SKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
+ FP G R+ A +G D DGD +FV + +++
Sbjct: 427 ---CVVFPSVGKRAPASMTSGSDLDGDQFFVCWDSDII 461
>gi|341891713|gb|EGT47648.1| hypothetical protein CAEBREN_06166 [Caenorhabditis brenneri]
Length = 1640
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 78/322 (24%), Positives = 134/322 (41%), Gaps = 68/322 (21%)
Query: 491 LNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSY-- 548
L + +P + RPS IK +A D +E+VK + P L++ LI +L
Sbjct: 730 LEEIIPEINVAFRPSQIKFQAKHIEGD-----QIEMVKPAG-PVPVSLNKPLINILDQVS 783
Query: 549 ---GGVPEIFFLDILRNALDDARGVFSNK-------RNALK-----VSFNYGGMDYDFTS 593
G V + + +D F+ + RN LK V +Y + FT
Sbjct: 784 EMQGVVCHKRMVSRIEELMDRQVQSFAKQMNDETYCRNRLKEFPRRVDIDYLRTTWGFTL 843
Query: 594 ARMILSGISLDEPYLQH------RLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILK 647
+R EP+ + + SI + K+ +Q +P L G VD TG L+
Sbjct: 844 SR---------EPFFRSLIKAAIKFSITKQLRKEQIQ---IPKELGRTLFGVVDETGRLQ 891
Query: 648 SNEVCI-----------------ILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELE 690
+V + +++G V K+L+ +NP + GD+ + +A + EL
Sbjct: 892 YGQVFVQYSSNILNKHPVRLADQSVQNGVVVTGKILISKNPCIVPGDVRIFEAVDIPELH 951
Query: 691 DFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLS 750
+ FP GPR DE+AG D DGD Y V +P++L W + + S
Sbjct: 952 HMCD----VVVFPQAGPRPHPDEMAGSDLDGDEYSVIWDPQMLLE------WNEPAFDFS 1001
Query: 751 ANKRLIDFSLEELESELFKLFL 772
K+ I++ E+++ + + ++
Sbjct: 1002 VEKQRIEWDPNEVDNLMREFYV 1023
>gi|340960580|gb|EGS21761.1| hypothetical protein CTHT_0036280 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1520
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 95/381 (24%), Positives = 158/381 (41%), Gaps = 78/381 (20%)
Query: 369 RLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALK 428
R+ L+ S +V I +R+ED P ++ DG + TDG G IS LA
Sbjct: 4 RIGLLFSTARVAKV----IPPDRVEDIP------DIESPDG--YVFTDGCGLISPHLA-- 49
Query: 429 CPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGT 488
++L V R + P ++Q+R Y G KG
Sbjct: 50 ----------------------QDLARRLGIVFRDRRYT---PSVLQIR--YRG--YKGV 80
Query: 489 LLLNKKL---PPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIAL 545
+ ++ ++ P +++R SM K D +S VV+ S +L+ +I L
Sbjct: 81 VTVDPRMTSDPRILLRMRKSMKKFSGGDD-------HSFSVVEYSKPFTYGFLNDEVIVL 133
Query: 546 LSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNY-GGMDYDFTSARMILSGISLD 604
L+ GV +I++ D+ ++ + +F + G++ + +++
Sbjct: 134 LNALGVDR----EIIKKKQDNHFKFLADASRDPRSAFRFLSGLNMPDLAESVLVESFDAI 189
Query: 605 EPYLQHRLSILMKEE------KKSLQAGKLPVTESYYLMGTVDPTGILKSNE--VCIILK 656
P R+ L+K E K+ Q ++ + +S L G D G+LK E V I L+
Sbjct: 190 RP----RIRSLVKNEYAKMLNKREEQKCRILIPKSRLLFGVCDAWGVLKEGECAVKITLE 245
Query: 657 DGQVSWE----KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLAD 712
+ + +VLV RNP LH GD+ + EL V I F G R AD
Sbjct: 246 ENGLPMALKNCEVLVTRNPCLHPGDLQKFRVVERPELSHLVD----CIVFSTKGKRPAAD 301
Query: 713 EIAGGDFDGDMYFVSRNPELL 733
++GGD DGD +FV + +L+
Sbjct: 302 MMSGGDLDGDTFFVCWDLDLI 322
>gi|389751599|gb|EIM92672.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1228
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 104/225 (46%), Gaps = 22/225 (9%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P QVR + G+ KG + ++ +L I +RPSMIK +A L +E+ +
Sbjct: 623 PGAFQVR--FQGS--KGVVTVDPRLRGNAICVRPSMIKFEAPESLD-------VEIAQAF 671
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYG-GMDY 589
++P K YL+R LI +L GVP F + A+ + R ++ YG G Y
Sbjct: 672 DRPSKYYLNRPLIMILEALGVPYRVFDRLQTRAITQVHKASRSLRGLAEIMEAYGLGTSY 731
Query: 590 DFTSARMILSGISLDEP---YLQHRLSILMKEE--KKSLQAGKLPVT-ESYYLMGTVDPT 643
S + LS + ++ P HR++ + ++P+ + L+G D
Sbjct: 732 RLPSIFLSLSKLHVEAPPDDSFFHRVNDFTVHHILRDLKHHARIPLDRHGWTLVGVADIH 791
Query: 644 GILKSNEV--CIILKDGQVSW--EKVLVYRNPGLHFGDIHVLKAT 684
G L+ EV I L DG+ + +V+V R+P +H GD+ VL A
Sbjct: 792 GWLREKEVYAYIRLPDGEAFYLEGRVMVSRSPTIHPGDVQVLTAV 836
>gi|327295881|ref|XP_003232635.1| hypothetical protein TERG_06627 [Trichophyton rubrum CBS 118892]
gi|326464946|gb|EGD90399.1| hypothetical protein TERG_06627 [Trichophyton rubrum CBS 118892]
Length = 1207
Score = 69.7 bits (169), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 120/544 (22%), Positives = 216/544 (39%), Gaps = 106/544 (19%)
Query: 217 KWDSGKTH----MYHCHISTKGNCTFKGPYLNQTRTHLQRELGD--DNILLVKFDEELGG 270
+WD H + H T GPY +T+ + R+ D D + V+F +E G
Sbjct: 405 EWDINLMHEKNVLVHRATVTPAGIYLSGPY-AETKNRILRKYLDNIDYFIRVEFLDETGD 463
Query: 271 ----HRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFV 326
+N + ++ + + GI + R + F F S C+F
Sbjct: 464 PVFFDPHANLEPIFHQRFAGVMKRGIEIAGRGFEFLGFSHS---------SLRAQTCWFA 514
Query: 327 RMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSR 386
++A D Y L+ +T+ F H+R+ S A +R+ S T+
Sbjct: 515 APFTTA--DGDY---LNARTIIGNIGYFDHIRSPSKQA---ARIGQAFSDTLTSISVSKE 566
Query: 387 INIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKC-PTYVYKEKCTNDDSTE 445
+ R D D+ I +DG G +S DL + Y +EK
Sbjct: 567 VVWMRAPDVKRNDR------------IFSDGVGVMSRDLMYRIWNEYALREKVK------ 608
Query: 446 RSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPS 505
P + Q+R+ KG + L+ + + + +R S
Sbjct: 609 -------------------------PTVFQIRI----AGAKGMVSLDTRRKGEFLMLRES 639
Query: 506 MIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALD 565
M+K D DL + +E+ + YL+ +I +L GVP F + ++ ++
Sbjct: 640 MVKFPTD-DLYN------IEICGAGIRALPFYLNNQIIKILEDLGVPFEAFHQLQQDEIN 692
Query: 566 DARGVF-SNKRNALKVSFNYGGMDYDFTSARMILSGISLD---EPYLQHRLSILMKEEKK 621
F S +R A + + ++L G+ + +P+L+ + + +
Sbjct: 693 FLYSTFNSTERAAKFLEDSPVPRSLRLPWLFLVLKGLGIRYTRDPFLKRVMELTTLLRLR 752
Query: 622 SLQ-AGKLPVTESYYLMGTVDPTGILKSNEV-CIIL-KDGQ---VSWEKVLVYRNPGLHF 675
L+ ++ V + L G +D TG LK NE+ C+ L ++G+ + + V++ R+P LH
Sbjct: 753 DLKYRARIRVPNAVTLYGIMDETGYLKENEIYCVYLGENGRREILVRDNVVITRSPALHP 812
Query: 676 GDIHVLKATYV------KELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRN 729
GDI V+ A V ++L + V S++ G R L ++GGD DGD+Y + +
Sbjct: 813 GDIQVVNAVDVPANSPLRKLHNCVAFSQH-------GDRDLPSMLSGGDLDGDLYNIIYD 865
Query: 730 PELL 733
L+
Sbjct: 866 TRLI 869
>gi|116195262|ref|XP_001223443.1| hypothetical protein CHGG_04229 [Chaetomium globosum CBS 148.51]
gi|88180142|gb|EAQ87610.1| hypothetical protein CHGG_04229 [Chaetomium globosum CBS 148.51]
Length = 1676
Score = 69.7 bits (169), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 114/279 (40%), Gaps = 53/279 (18%)
Query: 471 PLLMQVRLFYNG----TAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEV 526
P ++Q+R Y G V T+ +KK +++R SM K D +S V
Sbjct: 205 PSVLQIR--YRGYKGVVTVDPTMAADKKY---LLRMRKSMKKFSGGDD-------HSFSV 252
Query: 527 VKTSNQPRKTYLSRNLIALLSYGGVPEIFF-------LDILRNALDDARGVFSNKRNALK 579
V+ S YL+ +I LL GV L +A D R F
Sbjct: 253 VEHSKPYTYGYLNDEVIILLDALGVDRAVIKRKQEEHFRFLADATQDPRSAFR------- 305
Query: 580 VSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEE------KKSLQAGKLPVTES 633
Y M + R+++ + P R+ L+K E K+ Q ++ + +S
Sbjct: 306 -FLCYVNMPQ--LAERVLMDSLESVRP----RIQALVKNEYAKMLNKRDEQKCRILLPKS 358
Query: 634 YYLMGTVDPTGILKSNEVCIILK---DGQVSWEK---VLVYRNPGLHFGDIHVLKATYVK 687
L G D G+LK E + + DGQ + K VLV RNP LH GD+ K +
Sbjct: 359 RLLFGVCDAWGVLKEGECAVKITMDGDGQPAALKGCDVLVTRNPCLHPGDMQKFKVVEKR 418
Query: 688 ELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFV 726
EL V I F G R AD ++GGD DGD +FV
Sbjct: 419 ELAHLVD----CIVFSSQGRRPAADLMSGGDLDGDTFFV 453
>gi|302682738|ref|XP_003031050.1| hypothetical protein SCHCODRAFT_235575 [Schizophyllum commune H4-8]
gi|300104742|gb|EFI96147.1| hypothetical protein SCHCODRAFT_235575 [Schizophyllum commune H4-8]
Length = 1178
Score = 69.7 bits (169), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 106/467 (22%), Positives = 187/467 (40%), Gaps = 61/467 (13%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P Q+R KG L ++ L + + +R SMIK ++ D +LE+ +
Sbjct: 589 PAAFQIRFM----GSKGMLSVDHALHGREVCLRHSMIKFESSSD--------TLEIARAF 636
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVS--FNYGGMD 588
++P + YL+R LI ++ GVP + LR+ + V S+ + K + F G+
Sbjct: 637 DRPGRYYLNRPLIMVMEGLGVP---YESFLRHQEAAVQNVHSSSESLAKCAKMFESFGLG 693
Query: 589 YDFTSARMILSGISL-------DEPYLQHRLSILMKEEKKSLQ-AGKLPVTESYYLMGTV 640
F ++L+ L + + + + L+ ++P+ +Y L+G
Sbjct: 694 TAFRVPSLLLNLEKLCNVKNLDANVFYRQMIEFATHHVLRELKNRARIPIPGAYTLVGVA 753
Query: 641 DPTGILKSNE--VCIILKDG-QVSWEK--VLVYRNPGLHFGDIHVLKATYVKELEDFVGT 695
D L E VCI D +V++ + VL+ R+P +H GD+ V++A +
Sbjct: 754 DVHRYLGPGEIFVCIRPHDSNEVTYLEGDVLISRSPTIHPGDVQVVRAIGRPKAGSPFAK 813
Query: 696 SKYA--IFFPCNGPRSLADEIAGGDFDGDMYF---VSRNPELLKHFKESERWMSTSKNLS 750
A + F G R L + GGD DGD Y ++ +PE F+ + + S +
Sbjct: 814 EPLANTVVFSVRGTRPLPTMLGGGDLDGDEYNLIPLNSHPE----FRPARTVEAASYAPA 869
Query: 751 ANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAM 810
K L + ++ F+N D V +L + D+S K+
Sbjct: 870 PRKTLTRAADMRDVADFVIDFINY------------DVLGIVAIHWLIIADQS--NKSIF 915
Query: 811 KENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNT 870
E+ L L ++ DA+D +KSG + + +++ P R + +V
Sbjct: 916 DEDCLTLSQLHSDAVDF-QKSG------QPVALDRIPALHFRAKPDWNAPETVKANSARY 968
Query: 871 VKSYEAVDRSVTEIWKLPCFDDGVPEACMTKWKGYYDQYRWEMKEAI 917
KS A+ R I LP + P + + Y R E I
Sbjct: 969 YKSQRAIGRLARAI-TLPSLKEADPRSTIPPLSDEYKDTRSHRGEDI 1014
>gi|222623633|gb|EEE57765.1| hypothetical protein OsJ_08301 [Oryza sativa Japonica Group]
Length = 1027
Score = 69.7 bits (169), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 149/725 (20%), Positives = 273/725 (37%), Gaps = 187/725 (25%)
Query: 238 FKGPYLNQTRTHLQRELGD-DNILLVKF-DEELGGHRSSN-----------NWNDSYSKY 284
F GP +N + ++ D +N L + F DE+ R+++ N Y +
Sbjct: 344 FYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASGHDANRTALYKRV 403
Query: 285 NEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSG 344
+ +GI +G + + F F S+S ++ ++SA++ Q G
Sbjct: 404 LSVLSDGITIGGKNFEFLAF------------SSSQLR------DNSAWMFASRQ----G 441
Query: 345 KTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNV 404
+ R R + +VA Y +RL S + + + + +E I D
Sbjct: 442 LAASDIRTWMGDFRNIRNVAKYAARLGQSFSSSTE-TLKVQKYEVEEISD---------- 490
Query: 405 VYKDGEALIHTDGTGFIS----EDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDV 460
K+G + +DG G IS ++A+KC N
Sbjct: 491 -IKNGTQHVFSDGIGKISSAFANEVAMKC--------------------------NLKRF 523
Query: 461 ARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQT 520
A P Q+R Y G KG + ++ + +R SM+K ++D D
Sbjct: 524 A---------PSAFQIR--YGG--YKGVVAVDPT-SRWKLSLRKSMLKFQSDNITVDVLA 569
Query: 521 FNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKV 580
++ QP +L+R LI LLS GV + F A++ + ++ + A++
Sbjct: 570 YSKY-------QP--GFLNRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEA 620
Query: 581 SFNYGGMDYDFTSARMILSGISLD-EPYLQHRLSILMKEEKKSLQA-GKLPVTESYYLMG 638
+ ++L G D EPYL L + L+ ++ + + +MG
Sbjct: 621 IELMPMGEITNAVKELLLCGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMG 680
Query: 639 TVDPTGILKSNEVCIILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKY 698
+D T LK + +V + G++ D
Sbjct: 681 CLDETRTLK--------------YGQVFIRATSGVNDND--------------------- 705
Query: 699 AIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLID- 757
R +E +G D DGD+YFVS +P L+ R ++ A +D
Sbjct: 706 ---------RPHPNECSGSDLDGDIYFVSWDPSLI-----PPRMVTPMDYTPAPTETLDH 751
Query: 758 -FSLEELESELFKLFLNTRF-CPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENML 815
++EE+E +N +NA + AD E+ A +
Sbjct: 752 DVTIEEVEEYFTNYIVNESLGMIANAHVVFAD----------------KEDLKAESSPCI 795
Query: 816 RLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSY- 874
L ++ A+D PK +G+ +P +L V+++P +M + + V++ES V+G +Y +K +
Sbjct: 796 ELAKLFSIAVDFPK-TGVPALIPPELHVKEYPDFMEKLDKVTYESKGVIGKLYREIKKHT 854
Query: 875 --------EAVDRSVTEIWKLPCFDDGVPEACMTKWKGYYDQYRWEMKEAIDKCTVEREE 926
E RS + ++D + EA K D+Y +++ +D ++ E
Sbjct: 855 PHIKHFTREVARRSYDTDMIVDGYEDYITEAMALK-----DEYDFKLGNLMDHYGIKSE- 908
Query: 927 AAELV 931
AE++
Sbjct: 909 -AEII 912
>gi|328848635|gb|EGF97840.1| hypothetical protein MELLADRAFT_114044 [Melampsora larici-populina
98AG31]
Length = 1135
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 138/593 (23%), Positives = 242/593 (40%), Gaps = 119/593 (20%)
Query: 358 RTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDG 417
+ ++ A YM+R++ + T + + I RIED V ++G TDG
Sbjct: 562 KVINIPARYMARVAQAFTSTRQ-SLTLLPSQIVRIED----------VERNGSCF--TDG 608
Query: 418 TGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVR 477
G IS DLA R +D + L A +R H+ + Q+R
Sbjct: 609 VGTISPDLA-------------------RQVD-EVLSAGLP--SRKRRHHAKSSCF-QIR 645
Query: 478 LFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTY 537
L KG L ++ L + +RPSM K + L +L++ + +P Y
Sbjct: 646 L----GGFKGMLSVDPTLKQACVCVRPSMDKFVSPDSL-------TLDIAGSFTRPLPAY 694
Query: 538 LSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMI 597
L+R +I +L G+ E FL + R + +N R A ++ MD + AR
Sbjct: 695 LNRPMIKVLEDLGIHEQVFLALQREIVSKVEHSRTNLRRASEL------MD-QLSMART- 746
Query: 598 LSGISLDEPYLQHRLSILMKEEKKS-------------LQA-------GKLPVTESYYLM 637
SG+ P + +L LM +E + +Q ++P+ SY L+
Sbjct: 747 -SGM----PSILRQLGTLMGDEGNTQSDFIEECYDLMIMQCFRDLKYRARIPLDASYTLV 801
Query: 638 GTVDPTGILKSNEV-CIILKDGQVSW---EKVLVYRNPGLHFGDIHVLKATYVKELEDF- 692
G D +L N V I G+ + + + R+P LH GD+ V+ +LE
Sbjct: 802 GVADEDQVLPPNFVYACIQYPGKAPFYLEGPITISRSPCLHPGDVRVVTGIGKLDLERAP 861
Query: 693 -VGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSA 751
+ + + F G RSL + GGD DGD+Y + PEL+ + R + +
Sbjct: 862 RLNALRNCVVFSVAGMRSLPSCLGGGDLDGDLYTLITLPELI---PATARLHPPASYTAP 918
Query: 752 NKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMK 811
+ +D + F FL+ +++D + R L + D++ ++
Sbjct: 919 EMKRLDRPCTIEDGAAF--FLD---------YISSDLVGVIASRHLHIADQA--DQGTRD 965
Query: 812 ENMLRLINIYYDALDAPKKSGIKVEV------PEDLKVEKFPC---YMRRDESVSFESTS 862
+ L L++++ DA+D P K+G+ V + P +K + F C + RR+ +ES
Sbjct: 966 DLCLELVSLHSDAVDYP-KTGVPVAIDQLPRAPNRMKPD-FMCPEHHERREGDDYYESQK 1023
Query: 863 VLGTIYNTVKSYEAVDRSVTEIWKLPCFDDGVPEACMTKWKGYYDQYRWEMKE 915
VLG ++ + + E +D I+ G P + +++ R + E
Sbjct: 1024 VLGKLFRQIPA-EKID-----IFHHHTHPGGPPVTTTSHTAALFERIRLAILE 1070
>gi|378728492|gb|EHY54951.1| RNA-directed RNA polymerase [Exophiala dermatitidis NIH/UT8656]
Length = 1308
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 117/279 (41%), Gaps = 50/279 (17%)
Query: 500 IQIRPSMIKVKAD-RDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLD 558
IQ+ S +K+K RD S ++ + EV+K++ + ++ +L+ LI +L GVP
Sbjct: 640 IQVSDSQLKIKPHPRDRSADESQRTFEVLKSAGECKEAHLNIQLITILEDRGVPRAALRK 699
Query: 559 ILRNALDDARGVFSNKR------NALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRL 612
+L DD + F + + AL+ G+ T L LD + ++
Sbjct: 700 LLE---DDTKSYFESLKEAMEDPKALRAWMQEHGL-ASRTEVTRFLGSFPLDR---RDQM 752
Query: 613 SILMKE--------EKKSLQAGKLP-------------VTESYYLMGTVDPTGILKSNEV 651
L++ K L AG L V S + DP G+L+ +V
Sbjct: 753 KYLLESGFDPTECARLKDLAAGFLQEYMTNYVERLWINVPCSTVVFCAPDPLGVLEEGQV 812
Query: 652 CIIL-----------KDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAI 700
I D + VLV RNP D+ + +A Y EL + K I
Sbjct: 813 FINFTSPVYDPVKGYHDTVLEGLDVLVARNPAYLASDMQLCQAVYKHELHLY----KNVI 868
Query: 701 FFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKES 739
FP G + LA ++GGD+DGD V +P+++++F +
Sbjct: 869 LFPVKGKQPLASLLSGGDYDGDTVTVIWDPDIVRNFSNT 907
>gi|302660624|ref|XP_003021989.1| hypothetical protein TRV_03883 [Trichophyton verrucosum HKI 0517]
gi|291185913|gb|EFE41371.1| hypothetical protein TRV_03883 [Trichophyton verrucosum HKI 0517]
Length = 1233
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 120/535 (22%), Positives = 209/535 (39%), Gaps = 106/535 (19%)
Query: 217 KWDSGKTH----MYHCHISTKGNCTFKGPYLNQTRTHLQRELGD--DNILLVKFDEELGG 270
+WD H + H T GPY +T+ + R+ D D + V+F +E G
Sbjct: 405 EWDINLMHEKNVLVHRATVTPAGIYLSGPY-AETKNRILRKYLDNIDYFIRVEFLDETGD 463
Query: 271 ----HRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFV 326
S+N + ++ + + GI + R + F F S C+F
Sbjct: 464 PVFFDPSANLEQIFHQRFAGVMKRGIEIAGREFEFLGFSHS---------SLRAQTCWF- 513
Query: 327 RMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSR 386
++ F Y L+ +T+ F H+R+ S A +R+ S T+
Sbjct: 514 ---AAPFTTANGDY-LNARTIIGNIGYFDHIRSPSKQA---ARIGQAFSDTLTSISVSKE 566
Query: 387 INIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKC-PTYVYKEKCTNDDSTE 445
+ R D D+ I +DG G IS DL + Y +EK
Sbjct: 567 VVWMRAPDVKRNDR------------IFSDGVGVISRDLMYRIWNEYALREKVK------ 608
Query: 446 RSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPS 505
P + Q+R+ KG + L+ + + + +R S
Sbjct: 609 -------------------------PTVFQIRI----AGAKGMVSLDTRRKGEFLMLRES 639
Query: 506 MIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALD 565
M+K D DL + +E+ + YL+ +I +L VP F + ++ ++
Sbjct: 640 MVKFPTD-DLYN------IEICGAGIRALPFYLNNQIIKILEDLEVPFEAFHQLQQDEIN 692
Query: 566 DARGVF-SNKRNALKVSFNYGGMDYDFTSARMILSGISL---DEPYLQHRLSILMKEEKK 621
F S +R A + + ++L G+ + +P+L+ + + +
Sbjct: 693 FLYSTFNSTERAAKFLEDSPVPKSLRLPWLFLVLKGLGIRYTQDPFLKRVMELTTLLRLR 752
Query: 622 SLQ-AGKLPVTESYYLMGTVDPTGILKSNEV-CIILK-DGQ---VSWEKVLVYRNPGLHF 675
L+ ++ V + L G +D TG LK NE+ C L DG+ + + V++ R+P LH
Sbjct: 753 DLKYRARIRVPNAVTLYGIMDETGYLKENEIYCAYLGGDGRREILVRDNVVITRSPALHP 812
Query: 676 GDIHVLKATYV------KELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMY 724
GDI V+ A V ++L + V S++ G R L ++GGD DGD+Y
Sbjct: 813 GDIQVVNAVDVPANSPLRKLHNCVAFSQH-------GDRDLPSMLSGGDLDGDLY 860
>gi|226287106|gb|EEH42619.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 1366
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 104/393 (26%), Positives = 160/393 (40%), Gaps = 47/393 (11%)
Query: 369 RLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALK 428
RL+L LS+T+ S + + R E C D G V+ DG AL+ I L L+
Sbjct: 656 RLALGLSRTL------STVVLRREEVIFCPDPPGPVM-NDGCALMSRSLGLEIKRILDLE 708
Query: 429 CPTYVYKEKCTN---------DDSTERSIDRK-ELEANFSDVARTESHYGEPPLLMQVRL 478
Y+ + + DDS + DR LE S + + H G P
Sbjct: 709 TLPACYQGRISGAKGIWMVDRDDSRFKGGDRDFGLEITESQLKISYPH-GPP-------- 759
Query: 479 FYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYL 538
+N V L ++ + + PS + ++ + L G +S + K Q +
Sbjct: 760 -HNPRLVADNTQLTFEVVQWSQPLNPSSLNLQVLKVLQHGGVGHS-HIKKLIQQEVSIFY 817
Query: 539 SRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMIL 598
L + GV +L ++ DD +S KR ++ N+ Y + ++
Sbjct: 818 KEFLKVIHLSNGVACRKWLQKMKRFGDDG---YSYKRQTRRID-NFFPSQYVEQAVLLLD 873
Query: 599 SG-ISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILK- 656
SG + L PYL ++K+ SL+ K+ V++S Y DP G+L +EV
Sbjct: 874 SGFLPLKLPYLTQLFRRILKDYLDSLRKLKVSVSQSTYAYCIADPLGVLSPDEVHFGFSH 933
Query: 657 ---DGQVSWE------KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGP 707
DG V VLV R P DI +A Y EL F K I FP G
Sbjct: 934 KWDDGSVVVGTELHDMNVLVARLPAHLPTDIQKRRAVYKNELRHF----KDVIVFPTTGD 989
Query: 708 RSLADEIAGGDFDGDMYFVSRNPELLKHFKESE 740
LA ++GGD+DGD +V +P +++ F S
Sbjct: 990 VPLASLLSGGDYDGDQCWVCWDPIIVREFSNSH 1022
>gi|341880571|gb|EGT36506.1| hypothetical protein CAEBREN_02888 [Caenorhabditis brenneri]
Length = 1640
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 75/319 (23%), Positives = 135/319 (42%), Gaps = 62/319 (19%)
Query: 491 LNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSY-- 548
L+ +P + RPS IK +A D +E+VK + P L++ LI +L
Sbjct: 730 LDDLIPEIKVAFRPSQIKFQAKHIEGD-----QIEMVKPAG-PVPVSLNKPLINILDQVS 783
Query: 549 ---GGVPEIFFLDILRNALDDARGVFSNK-------RNALK-----VSFNYGGMDYDFTS 593
G + + + +D F+ + RN LK V +Y + FT
Sbjct: 784 EMQGVLCHKRMVSRIEELMDRQVQSFAKQMNDETYCRNRLKEFPRRVDIDYLRTTWGFTL 843
Query: 594 ARMILSGISLDEPYLQHRLSILMK-EEKKSLQAGKLPVTESY--YLMGTVDPTGILKSNE 650
+R EP+ + + +K K L+ ++P+ + L G VD TG L+ +
Sbjct: 844 SR---------EPFFRSLIKAAIKFSITKQLRKEQIPIPKELGRTLFGVVDETGRLQYGQ 894
Query: 651 VCI-----------------ILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFV 693
V + +++G V +L+ +NP + GD+ + +A + EL
Sbjct: 895 VFVQYSSNILNKHPVRLADQSVQNGVVVTGPILISKNPCIVPGDVRIFEAVDIPELHHMC 954
Query: 694 GTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANK 753
+ FP +GPR DE+AG D DGD Y V +P++L W + + S K
Sbjct: 955 D----VVVFPQSGPRPHPDEMAGSDLDGDEYSVIWDPQMLLE------WNEPAFDFSVEK 1004
Query: 754 RLIDFSLEELESELFKLFL 772
+ I++ E+++ + + ++
Sbjct: 1005 QRIEWDPNEVDNLMREFYV 1023
>gi|403413304|emb|CCM00004.1| predicted protein [Fibroporia radiculosa]
Length = 1503
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 148/655 (22%), Positives = 262/655 (40%), Gaps = 133/655 (20%)
Query: 228 CH--ISTKGNCTFKGPYLNQTRTHLQR-ELGDDNILLVKF-DEELGGHRSSNNWNDS--- 280
CH T +GPY++Q+ ++R D+ L V F DE+ +R + + S
Sbjct: 409 CHHVTYTPTRMILEGPYVSQSNRVIRRYPDHQDHFLRVDFRDEDRLQYRWAREVDGSSLL 468
Query: 281 YSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGY-- 338
+ + + R G + R + F + +R + FI+ Y
Sbjct: 469 FDRVGGVLRSGFELAGRYFEFLAYSQSA-----------------LREHAVWFINPFYHP 511
Query: 339 -QYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPC 397
+ ++ +T+ ++ F V + + Y +RL+ + T V +R E + D
Sbjct: 512 EEGHITAQTIRDSLGDFSGV--IRQPSKYAARLAQAFTAT-DPSVRITRGQWEEMPDL-- 566
Query: 398 RDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANF 457
G Y+ TDG G IS +L ++ C + R
Sbjct: 567 ----GEKPYE------FTDGVGTISTELG----NLIWDALCASRPENRRR---------- 602
Query: 458 SDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKA-DRDLS 516
G P Q+R KG ++++++L + +RPSM K +A D DL+
Sbjct: 603 ----------GLKPSAYQIRFL----GYKGMVVIDEQLQGIKMHLRPSMNKFRAHDDDLA 648
Query: 517 DGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDD--------AR 568
+ +E+ + +P +YL+R LI +L GV + F+++ A D +
Sbjct: 649 E------IEIARAFERPGTSYLNRPLIMILEDRGVDKKAFINLQERAKTDIYTASDSITK 702
Query: 569 GVFSNKRNALKVSFNYGGMDYDFTSARMILSGIS-------LDEPYLQHRLSILMKEEKK 621
V K + L S+ G+D+ S + I G L +P+++ + +
Sbjct: 703 SVSMLKAHTLGKSY---GLDFILQSLQNIGMGFKHEKSIHVLQDPFIERLIHYSKNHVLR 759
Query: 622 SLQAG-KLPVTESYYLMGTVD--PTGILKSNEVCIILKDGQV------------SWEK-- 664
++ G ++P+ +SY L+G D P + E LK G++ ++ K
Sbjct: 760 DIKHGARIPIPDSYLLVGVADEGPAYVHAGMENVFCLKKGEIFACVQNADDPEPTYLKGS 819
Query: 665 VLVYRNPGLHFGDIHVLKATYVKELED--FVGTSKYAIFFPCNGPRSLADEIAGGDFDGD 722
V++ R+P +H GD+ + A + F K + P G RSLA + GGD DGD
Sbjct: 820 VVISRSPVVHPGDVQRVWAIGSPPPDKVCFFRNLKNVVVLPSAGGRSLASCLGGGDLDGD 879
Query: 723 MYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAK 782
+Y + ++ LL E + LSA R +D +S + + C +
Sbjct: 880 LYSIIKHGPLLPTEHE-----DPASYLSAGTRTLD-----RDSTIADI------CDFVVE 923
Query: 783 SLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEV 837
L +D + DR L + D+S K L L + A+D P K+GI V++
Sbjct: 924 YLNSDVLGLLSDRHLIIADQSKHGTNDTK--CLSLAELCSQAVDYP-KNGIPVDI 975
>gi|361130100|gb|EHL01954.1| putative RNA-dependent RNA polymerase 2 [Glarea lozoyensis 74030]
Length = 263
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 60/120 (50%), Gaps = 10/120 (8%)
Query: 620 KKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILK---DGQ---VSWEKVLVYRNPGL 673
K+ Q ++ + +S L G D G+LK E + + DGQ + VLV RNP L
Sbjct: 119 KRDEQRCRILIPKSRLLFGICDAWGVLKEGECAVKVTMDGDGQPYTLKGMDVLVTRNPCL 178
Query: 674 HFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
H GD+ KA EL V I FP G R AD ++GGD DGD +FV + +L+
Sbjct: 179 HPGDLQKFKAVERDELAHLVD----CIVFPTRGARPAADLMSGGDLDGDTFFVCWDSDLI 234
>gi|312079416|ref|XP_003142164.1| RNA dependent RNA polymerase [Loa loa]
Length = 1486
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 107/405 (26%), Positives = 167/405 (41%), Gaps = 86/405 (21%)
Query: 517 DGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRN 576
D ++ +EVVK S P LSR LI +L V E + + + + S +
Sbjct: 644 DEESAAEIEVVKYS-MPAPVCLSRPLIMILD--QVSE-------KQSRHLHKKICSRIHS 693
Query: 577 ALKVSFN-YGGMDYDFT------SARMIL---------SGISL-DEPYLQ------HRLS 613
L++ N M +D S+RM L SGI+ +EP+ + HR +
Sbjct: 694 LLELELNKLSAMMFDENDAAEELSSRMSLPIDFHQLHSSGITFTNEPFFRSLLIAIHRYN 753
Query: 614 ILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDG--QVSWEK------V 665
I + K + LP + + + G VD TG+L+ +V I VS +K V
Sbjct: 754 IKLHLSKSKI---FLPASMGHTMYGVVDDTGLLQHGQVFIQYSPSIRYVSGKKIIYTGPV 810
Query: 666 LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYF 725
+V +NP GD+ + +A Y L I FP GPR DE+AG D DGD Y
Sbjct: 811 MVTKNPCHVAGDVRMFEAVYQDALSHLCDV----IVFPRYGPRPHCDEMAGSDLDGDEYT 866
Query: 726 VSRNPELLKHFKESERWMSTSKNLSA-------NKRLIDFSLEELESELFKLFLNTRFCP 778
V + EL F+ +E+ M K++ +IDF L+ L +
Sbjct: 867 VIFDKELF--FENNEQAMFFPKSIPTEYDTPPTTGDMIDFFLKYLSQDSIGRM------- 917
Query: 779 SNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVP 838
SNA + D + F + D A + A A+D PK +G++ + P
Sbjct: 918 SNAHLIMCD----RLGLFHEICDSIARKCAV--------------AVDFPK-TGVQAK-P 957
Query: 839 EDL--KVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSV 881
L + + P YM+ S+ S +LG +Y + E + +V
Sbjct: 958 LILHEQCDSIPDYMQNTIKPSYRSKRLLGQLYRKAQKVEDISEAV 1002
>gi|393908637|gb|EJD75145.1| CBR-RRF-1 protein [Loa loa]
Length = 1689
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 112/510 (21%), Positives = 201/510 (39%), Gaps = 100/510 (19%)
Query: 409 GEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYG 468
GE I +DG G +SED A + + KC R + L+ S
Sbjct: 743 GEPFIFSDGVGKLSEDFAERIAKDLGLNKCVPSCFQFRL---RGLKGVLS---------- 789
Query: 469 EPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVK 528
P L Q RL+ V+ +K+ + RPS K A R +E+VK
Sbjct: 790 VDPALRQRRLWAECNDVEDKNRKTEKVNDLDVLFRPSQDKFHAPRK-------EMIEIVK 842
Query: 529 TSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNAL---------- 578
S+ P L+R I +L V ++ D+ R + G+ + L
Sbjct: 843 YSS-PTPVCLNRPFINILD--QVSDMQGFDVHRRIVHRIHGLLDRQLLQLSDALMSENKC 899
Query: 579 ---------KVSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAG--- 626
+++ Y + FT + EP+ + +L+ + +LQ
Sbjct: 900 RERLAEFPRRINVQYLSLARGFTLTQ---------EPFFR---GLLIASVRFTLQKQLFK 947
Query: 627 ---KLPVTESYYLMGTVDPTGILKSNEVCIILKDG------------QVSWEKVLVYRNP 671
++P + G +D TG+L+ +V + + + VL+ +NP
Sbjct: 948 EQIQIPANLGRTMFGILDETGLLQYGQVFVQFTNNVSLKTPSKAAAKTIVKGPVLITKNP 1007
Query: 672 GLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPE 731
+ GD+ V +A + EL V + FP +GPR DE+AG D DGD Y V + +
Sbjct: 1008 SIVAGDVRVFEAIDLPELRHLVD----VVVFPQHGPRPHTDEMAGSDLDGDEYSVIWDDQ 1063
Query: 732 LLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQA 791
+L F +E M SK + L + +E+ E+ + ++ ++ ++ + A+ + A
Sbjct: 1064 ML--FDHNEEPMDFSKLVRPPDLLEE---DEVVREMRRFYV--KYIMQDSVGVIANAFLA 1116
Query: 792 VMDRFLTLGD--ESAEEKAAMKENMLR-------LINIYYDALDAPKKSGIKVEVPEDLK 842
D F D S EK + + + L+ + D K+ PE +
Sbjct: 1117 NSDMFGIASDICTSIAEKHSQSVDFPKTGWPPRPLVKEWSKGPDG------KIMPPE--R 1168
Query: 843 VEKFPCYMRRDESVSFESTSVLGTIYNTVK 872
E++P +M + S+ ST ++G ++ ++
Sbjct: 1169 PERWPDFMCKTHEPSYVSTRLVGQLFRRIR 1198
>gi|393912446|gb|EFO21905.2| RNA dependent RNA polymerase [Loa loa]
Length = 1514
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 130/307 (42%), Gaps = 60/307 (19%)
Query: 599 SGISL-DEPYLQ------HRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEV 651
SGI+ +EP+ + HR +I + K + LP + + + G VD TG+L+ +V
Sbjct: 760 SGITFTNEPFFRSLLIAIHRYNIKLHLSKSKI---FLPASMGHTMYGVVDDTGLLQHGQV 816
Query: 652 CIILKDG--QVSWEK------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFP 703
I VS +K V+V +NP GD+ + +A Y L I FP
Sbjct: 817 FIQYSPSIRYVSGKKIIYTGPVMVTKNPCHVAGDVRMFEAVYQDALSHLCDV----IVFP 872
Query: 704 CNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSA-------NKRLI 756
GPR DE+AG D DGD Y V + EL F+ +E+ M K++ +I
Sbjct: 873 RYGPRPHCDEMAGSDLDGDEYTVIFDKELF--FENNEQAMFFPKSIPTEYDTPPTTGDMI 930
Query: 757 DFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLR 816
DF L+ L + SNA + D + F + D A + A
Sbjct: 931 DFFLKYLSQDSIGRM-------SNAHLIMCD----RLGLFHEICDSIARKCAV------- 972
Query: 817 LINIYYDALDAPKKSGIKVEVPEDL--KVEKFPCYMRRDESVSFESTSVLGTIYNTVKSY 874
A+D PK +G++ + P L + + P YM+ S+ S +LG +Y +
Sbjct: 973 -------AVDFPK-TGVQAK-PLILHEQCDSIPDYMQNTIKPSYRSKRLLGQLYRKAQKV 1023
Query: 875 EAVDRSV 881
E + +V
Sbjct: 1024 EDISEAV 1030
>gi|328855950|gb|EGG05073.1| hypothetical protein MELLADRAFT_64236 [Melampsora larici-populina
98AG31]
Length = 1240
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 133/556 (23%), Positives = 230/556 (41%), Gaps = 114/556 (20%)
Query: 358 RTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDG 417
+ ++ A YM+R++ + T + + I RIED V ++G TDG
Sbjct: 562 KVINIPARYMARVAQAFTSTRQ-SLTLLPSQIVRIED----------VERNGSCF--TDG 608
Query: 418 TGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVR 477
G IS DLA R +D + L A +R H+ Q+R
Sbjct: 609 VGTISPDLA-------------------RQVD-EVLSAGLP--SRKRRHHANSSCF-QIR 645
Query: 478 LFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTY 537
L KG L ++ L + +RPSM K + L +L++ + +P Y
Sbjct: 646 L----GGFKGMLSVDPTLKQACVCVRPSMDKFVSPDSL-------TLDIAGSFTRPLPAY 694
Query: 538 LSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMI 597
L+R +I +L G+ E FL + R + +N R A ++ MD + AR
Sbjct: 695 LNRPMIKVLEDLGIHEQVFLALQREIVSKVEHSRTNLRRASEL------MD-QLSMART- 746
Query: 598 LSGISLDEPYLQHRLSILMKEEKKS-------------LQA-------GKLPVTESYYLM 637
SG+ P + +L LM +E + +Q ++P+ SY L+
Sbjct: 747 -SGM----PSILRQLGTLMGDESNTQSDFIEECYDLMIMQCFRDLKYRARIPLDASYTLV 801
Query: 638 GTVDPTGILKSNEV-CIILKDGQVSW---EKVLVYRNPGLHFGDIHVLKATYVKELEDF- 692
G D +L N V I G+ + + + R+P LH GD+ V+ +LE
Sbjct: 802 GVADEDQVLPPNFVYACIQYPGKAPFYLEGPITISRSPCLHPGDVRVVTGIGKLDLERAP 861
Query: 693 -VGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSA 751
+ + + F G RSL + GGD DGD+Y + PEL+ + R + +
Sbjct: 862 RLNALRNCVVFSVAGMRSLPSCLGGGDLDGDLYTLITLPELI---PATARLHPPASYTAP 918
Query: 752 NKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMK 811
+ +D + F FL+ +++D + R L + D++ ++
Sbjct: 919 EMKRLDRPCTIEDGAAF--FLD---------YISSDLVGVIASRHLHIADQA--DQGTRD 965
Query: 812 ENMLRLINIYYDALDAPKKSGIKVEV------PEDLKVEKFPC---YMRRDESVSFESTS 862
+ L L++++ DA+D P K+G+ V + P +K + F C + RR+ +ES
Sbjct: 966 DLCLELVSLHSDAVDYP-KTGVPVAIDQLPRAPNRMKPD-FMCPEHHERREGDDYYESQK 1023
Query: 863 VLGTIYNTVKSYEAVD 878
VLG ++ + + E +D
Sbjct: 1024 VLGKLFRQIPA-EKID 1038
>gi|170577358|ref|XP_001893975.1| RNA dependent RNA polymerase family protein [Brugia malayi]
gi|158599674|gb|EDP37189.1| RNA dependent RNA polymerase family protein [Brugia malayi]
Length = 261
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 122/268 (45%), Gaps = 50/268 (18%)
Query: 627 KLPVTESYYLMGTVDPTGILKSNEV---C---IILKDGQVSWEK------VLVYRNPGLH 674
++P + G +D TG L+ ++ C I LK S K V++ +NP +
Sbjct: 18 QIPSHLGRSMFGVMDETGQLQWGQIFVQCTRNIWLKTPSPSAAKFILKGKVMLTKNPCIV 77
Query: 675 FGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLK 734
GD+ V +A + EL V + FP +GPR DE+AG D DGD Y V + EL+
Sbjct: 78 AGDVRVFEAVDIPELHHLVDV----VVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQELI- 132
Query: 735 HFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMD 794
F+ +E + +K+ S NK +ID + +++ E+ K F+N + D ++ +
Sbjct: 133 -FEHNEPPLDFTKSTSGNK-IIDEA--QVDLEMRKFFVNY---------IKQDSIGSISN 179
Query: 795 RFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEV--------------PED 840
FL +A+ E + + + A+D PK + PE
Sbjct: 180 AFLV----NADLYGITSEVCINIAKKHSKAVDFPKTGDAPAPLTRQWTHDKNGNMLPPE- 234
Query: 841 LKVEKFPCYMRRDESVSFESTSVLGTIY 868
+ E++P +M ++ S+ S+ ++G +Y
Sbjct: 235 -RAERWPDFMCKNHEPSYISSRLVGQLY 261
>gi|312082346|ref|XP_003143407.1| RNA dependent RNA polymerase [Loa loa]
Length = 1312
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 112/510 (21%), Positives = 201/510 (39%), Gaps = 100/510 (19%)
Query: 409 GEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYG 468
GE I +DG G +SED A + + KC R + L+ S
Sbjct: 379 GEPFIFSDGVGKLSEDFAERIAKDLGLNKCVPSCFQFRL---RGLKGVLS---------- 425
Query: 469 EPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVK 528
P L Q RL+ V+ +K+ + RPS K A R +E+VK
Sbjct: 426 VDPALRQRRLWAECNDVEDKNRKTEKVNDLDVLFRPSQDKFHAPRK-------EMIEIVK 478
Query: 529 TSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNAL---------- 578
S+ P L+R I +L V ++ D+ R + G+ + L
Sbjct: 479 YSS-PTPVCLNRPFINILD--QVSDMQGFDVHRRIVHRIHGLLDRQLLQLSDALMSENKC 535
Query: 579 ---------KVSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAG--- 626
+++ Y + FT + EP+ + +L+ + +LQ
Sbjct: 536 RERLAEFPRRINVQYLSLARGFTLTQ---------EPFFR---GLLIASVRFTLQKQLFK 583
Query: 627 ---KLPVTESYYLMGTVDPTGILKSNEVCIILKDG------------QVSWEKVLVYRNP 671
++P + G +D TG+L+ +V + + + VL+ +NP
Sbjct: 584 EQIQIPANLGRTMFGILDETGLLQYGQVFVQFTNNVSLKTPSKAAAKTIVKGPVLITKNP 643
Query: 672 GLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPE 731
+ GD+ V +A + EL V + FP +GPR DE+AG D DGD Y V + +
Sbjct: 644 SIVAGDVRVFEAIDLPELRHLVD----VVVFPQHGPRPHTDEMAGSDLDGDEYSVIWDDQ 699
Query: 732 LLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQA 791
+L F +E M SK + L + +E+ E+ + ++ ++ ++ + A+ + A
Sbjct: 700 ML--FDHNEEPMDFSKLVRPPDLLEE---DEVVREMRRFYV--KYIMQDSVGVIANAFLA 752
Query: 792 VMDRFLTLGD--ESAEEKAAMKENMLR-------LINIYYDALDAPKKSGIKVEVPEDLK 842
D F D S EK + + + L+ + D K+ PE +
Sbjct: 753 NSDMFGIASDICTSIAEKHSQSVDFPKTGWPPRPLVKEWSKGPDG------KIMPPE--R 804
Query: 843 VEKFPCYMRRDESVSFESTSVLGTIYNTVK 872
E++P +M + S+ ST ++G ++ ++
Sbjct: 805 PERWPDFMCKTHEPSYVSTRLVGQLFRRIR 834
>gi|367034442|ref|XP_003666503.1| hypothetical protein MYCTH_2071684 [Myceliophthora thermophila ATCC
42464]
gi|347013776|gb|AEO61258.1| hypothetical protein MYCTH_2071684 [Myceliophthora thermophila ATCC
42464]
Length = 1182
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 114/534 (21%), Positives = 196/534 (36%), Gaps = 145/534 (27%)
Query: 230 ISTKGNCTFKGPYLNQTRTHLQRELGDDNILLVKFDEELGG---HRSSNNWNDSYSKYNE 286
+ T + GP L L++ + +F +E G S + + Y+++
Sbjct: 429 VVTPTSVLLHGPELEPMNRVLRKFPNHSYFIRAQFCDEAGNDLFFNSKVSLDRIYNRFKS 488
Query: 287 IAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFID---MGYQYILS 343
I +GI + R Y F S S ++ + + + F G +I+
Sbjct: 489 ILSDGIQIAGRVYKLLGF------------SHSSLRAHSAWLSAPFFHQNQRHGPDFII- 535
Query: 344 GKTVHEARYMFMHVRTVSSVANYMSRLSLILSKT-MKLEVDFSRINIERIEDEPCRDKDG 402
E F +R S A +R+ S+T L++D I + RI D
Sbjct: 536 -----ETLGDFNDIR---SPARRAARIGQAFSETPWALDLDEYGIQVSRIPD-------- 579
Query: 403 NVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVAR 462
V ++G + +DG G IS D L A + + +
Sbjct: 580 --VERNGR--VFSDGIGTISHD---------------------------ALSAVYKVIPK 608
Query: 463 TESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFN 522
++ P +Q+R KG L L+ L + I IR SMIK ++ D Q
Sbjct: 609 SKGF----PTCLQIRW----AGAKGMLALDPLLEGRRICIRDSMIKFASN----DKQ--- 653
Query: 523 SLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSF 582
LE+ +++P L+R LI +L P+ +FL++ L RG+ + N
Sbjct: 654 -LEICDMASRPMPMVLNRQLIKILEDMKAPDEWFLNLQSTELQRLRGISATVYNTAS--- 709
Query: 583 NYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAG---------------- 626
F + + I L + +L+ ++ + + S G
Sbjct: 710 --------FIRMQKVAESIKLHD-FLRQTEAMGIDYRQDSFLRGAVEIILLRELRLLKHK 760
Query: 627 -KLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEK------VLVYRNPGLHFGDIH 679
++PV E L G +D TG LK +V + + + + +LV R+P LH GD
Sbjct: 761 SRIPVREGITLFGVMDETGFLKEGQVYVTFDTEEGRYAQPPEPGPLLVTRSPALHPGDW- 819
Query: 680 VLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
G R L +++GGD DGD++ V +PE++
Sbjct: 820 --------------------------GSRDLPSQLSGGDLDGDVFHVIWDPEVV 847
>gi|295666726|ref|XP_002793913.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226277566|gb|EEH33132.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1176
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 110/257 (42%), Gaps = 45/257 (17%)
Query: 523 SLEVVKTSNQPRKTYLSRNLIALLSYGGVPE------------IFFLDILRNALDDARGV 570
+ EVV+ S + L+ ++ +L +GGV IF+ + L+ + + GV
Sbjct: 612 TFEVVQWSQPLNPSSLNLQVLKVLQHGGVGHSHIKKLIQQEISIFYKEFLK-VIHLSNGV 670
Query: 571 ----------------FSNKRNALKVSFNYGGMDYDFTSARMILSG-ISLDEPYLQHRLS 613
+S KR ++ N+ Y + ++ SG + L PYL
Sbjct: 671 ACRKWLQKMKRFGDDGYSYKRQTRRID-NFFPSQYVEQAVLLLDSGFLPLKLPYLTQLFR 729
Query: 614 ILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIIL----KDGQVSWE------ 663
++K+ SL+ K+ V++S Y DP G+L +EV +DG V
Sbjct: 730 WILKDYLDSLRKLKVSVSQSTYAYCIADPLGVLSPDEVHFGFSHEWEDGSVVVGTELHNI 789
Query: 664 KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDM 723
VLV R P DI +A Y EL F K I FP G LA ++GGD+DGD
Sbjct: 790 NVLVARLPAHLPTDIQKRRAVYKNELRHF----KDVIIFPTTGDVPLASLLSGGDYDGDQ 845
Query: 724 YFVSRNPELLKHFKESE 740
+V +P ++ F ++
Sbjct: 846 CWVCWDPIIVGEFSNTQ 862
>gi|453087546|gb|EMF15587.1| hypothetical protein SEPMUDRAFT_123844 [Mycosphaerella populorum
SO2202]
Length = 1406
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 15/116 (12%)
Query: 635 YLMGTVDPTGILKSNEVCIILKD--------GQVSWEK---VLVYRNPGLHFGDIHVLKA 683
++ G +DPTG L+ EVC+ ++ +V++ +LV RNP + DI ++A
Sbjct: 945 HMRGKLDPTGSLRPGEVCVCFEEPFDVADVGTRVNFLDDIDILVARNPAMGPSDIQKVRA 1004
Query: 684 TYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKES 739
+ +L + G I F G R LA+++ GGD+DGD ++ + P L + FK +
Sbjct: 1005 VFKPQLAKYAGN----IIFSARGMRPLANKLQGGDYDGDAFWFTWEPLLTEPFKNA 1056
>gi|324500541|gb|ADY40252.1| RNA-dependent RNA polymerase EGO-1 [Ascaris suum]
gi|333440978|gb|AEF32764.1| RdRP1 [Ascaris suum]
Length = 1644
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 114/520 (21%), Positives = 211/520 (40%), Gaps = 110/520 (21%)
Query: 409 GEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYG 468
GE I +DG G +S++ A K + N + I + ++ S
Sbjct: 702 GEPYIFSDGVGRLSQEFAEKIAKDI---NLANAVPSCFQIRHRGMKGVLS---------- 748
Query: 469 EPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVK 528
PLL + + +K + ++ + RPS K KA RD ++E+VK
Sbjct: 749 VDPLLDDRKQWAIAHGIKDGSMATSRINDLAVVFRPSQDKFKAPRD-------EAIEIVK 801
Query: 529 TSNQPRKTYLSRNLIALL----SYGG----------VPEIFFLDILRNA---LDDARGVF 571
S+ P L+R +I++L S G + E+ + ++ A LD+ R
Sbjct: 802 YSS-PTCVSLNRPMISILDQVSSMQGHTVHMTVTERIHELLDMQLMELAEIFLDEDRC-- 858
Query: 572 SNKRNALKVSFNYGGMDYDFTSARMILSGISL-DEPYLQHRLSILMKEEKKSLQAGKLPV 630
+K N L N + ++ G +L EP+ + L ++ K A + +
Sbjct: 859 RDKLNELPRLMNVDRLS--------LVRGFALTQEPFFRSLLRASVRYTLKKQLAKEQIL 910
Query: 631 TESYY---LMGTVDPTGILKSNEVCIILKDGQVSWEK--------------VLVYRNPGL 673
S+ + G +D TG L+S ++ + + W K VL+ +NP +
Sbjct: 911 IPSHLGRSMFGVMDETGQLQSGQIFVQYTNN--VWLKNPPPRAAKTILKGPVLMTKNPCI 968
Query: 674 HFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
GD+ +L+A + EL V + FP GPR DE+AG D DGD Y V + +L+
Sbjct: 969 VAGDVRLLEAVDIPELHHLVDV----VVFPQYGPRPHPDEMAGSDLDGDEYSVIWDKKLM 1024
Query: 734 KHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVM 793
F +E + +K + ++ + ++++ E+ K F+N + D ++
Sbjct: 1025 --FIRNENPLDFTKRM---RKYEEVGTDKVDLEMRKFFVNY---------IKQDSIGSIA 1070
Query: 794 DRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDL------------ 841
+ FL +A+ E + + A+D PK + PE L
Sbjct: 1071 NAFLV----NADLYGITSEICENIAKKHSQAVDFPKTG----DAPEPLTRVWTIGKDGSF 1122
Query: 842 ----KVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAV 877
+ E++P +M ++ S+ S ++G +Y ++ + V
Sbjct: 1123 VPPERSERWPDFMCKNHEPSYISPRLVGQLYRRIRLVDDV 1162
>gi|225683475|gb|EEH21759.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 1341
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 82/181 (45%), Gaps = 16/181 (8%)
Query: 571 FSNKRNALKVSFNYGGMDYDFTSARMILSG-ISLDEPYLQHRLSILMKEEKKSLQAGKLP 629
+S KR ++ N+ Y + ++ SG + L PYL ++K+ SL+ K+
Sbjct: 822 YSYKRQTRRID-NFFPSQYVEQAVLLLDSGFLPLKLPYLTQLFRRILKDYLDSLRKLKVS 880
Query: 630 VTESYYLMGTVDPTGILKSNEVCIILK----DGQVSWE------KVLVYRNPGLHFGDIH 679
V++S Y DP G+L +EV DG V VLV R P DI
Sbjct: 881 VSQSTYAYCIADPLGVLSPDEVHFGFSHKWDDGSVVVGTELHDMNVLVARLPAHLPTDIQ 940
Query: 680 VLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKES 739
+A Y EL F K I FP G LA ++GGD+DGD +V +P +++ F S
Sbjct: 941 KRRAVYKNELRHF----KDVIVFPTTGDVPLASLLSGGDYDGDQCWVCWDPIIVREFSNS 996
Query: 740 E 740
Sbjct: 997 H 997
>gi|295668891|ref|XP_002794994.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226285687|gb|EEH41253.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1142
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 80/330 (24%), Positives = 142/330 (43%), Gaps = 47/330 (14%)
Query: 537 YLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALK-VSFNYGGMDYDFTSAR 595
+L+ LI +L GV + FL + + ++ R + A + + +
Sbjct: 622 FLNAQLIKILEDLGVEQSAFLKLQADEIERLRATAPSTAQAARFLEDTHIAKSIGLPWLI 681
Query: 596 MILSGISL---DEPYLQH--RLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNE 650
IL G L D+ +L+ L++L+K +A ++ V + L G +D TGILK E
Sbjct: 682 SILEGFRLSHTDDEFLRRVMELAVLIKLRDLKYRA-RIRVPNAVTLFGIMDETGILKEGE 740
Query: 651 V-CIIL-KDGQ---VSWEKVLVYRNPGLHFGDIHVLKATYV------KELEDFVGTSKYA 699
+ C+ L +DG + +V+V R+P +H GD+ V KA V ++L + + S+Y
Sbjct: 741 IFCVTLSEDGHREVLVRPRVVVTRSPAMHPGDVQVAKAVDVPADSPLRQLHNCIAFSQY- 799
Query: 700 IFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFS 759
G R L ++GGD DGD+Y V + L+ + N+ ++
Sbjct: 800 ------GDRDLPSMLSGGDLDGDLYNVIYDETLIPKITVPPAEYPRVEEKVLNRPVV--- 850
Query: 760 LEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLIN 819
++ F+ F + A QA+ D+ ++ E L L
Sbjct: 851 ----TDDIIDFFVT--FMQQDQLGRIATIHQAIADQ---------RDRGTFDEQCLLLAE 895
Query: 820 IYYDALDAPKKSGIKVEVPEDLKVEKFPCY 849
++ A+D KSG+ V++ ++ KFP Y
Sbjct: 896 LHSTAVDF-SKSGVPVDLA---RIPKFPRY 921
>gi|353237176|emb|CCA69155.1| related to RNA-directed RNA polymerase (RdRP) [Piriformospora indica
DSM 11827]
Length = 1262
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 109/460 (23%), Positives = 180/460 (39%), Gaps = 103/460 (22%)
Query: 484 AVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLI 543
KG L +N L + + + SM+K K+ +D L + + P K +L+R LI
Sbjct: 680 GAKGVLGINPTLEGRKVVLHRSMVKFKS-KDYG-------LHIAFKFDHPLKLFLNRPLI 731
Query: 544 ALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISL 603
A+L + GV +F +L NA +K N+ +S + G ++ F S R+ G+
Sbjct: 732 AILEHLGVQIDWFKRLLVNA--------QSKMNSTLLSIDEGAAEF-FESRRL---GLPF 779
Query: 604 DEPYLQHRLS------ILMKE--------------------EKKSLQAGKLPVTESYYLM 637
D P + L + ++E +++ ++PV L+
Sbjct: 780 DLPRILRSLEKYEVTRVKLQEYDHPFNDFWLRCLDVAKAHIDRELKYKARIPVPFGCSLV 839
Query: 638 GTVDPTGILKSNEV--CIILKDGQVSW--EK---VLVYRNPGLHFGDIHVLKATYVKELE 690
G D L+++EV C +D + W EK V + R+P +H GD+ KA +
Sbjct: 840 GVPDVHMELEADEVYICKQERDREPKWFPEKPGYVYITRSPSIHPGDVQKFKAKHPPR-- 897
Query: 691 DFVGTSKY------AIFFPCNGPRSLADEIAGGDFDGDMY-FVSRNPELLKHFKESERW- 742
G+ Y A+ F C G R A + GGD DGD++ + P+ +
Sbjct: 898 ---GSVYYNHPVVNAVVFSCKGARPPASMLGGGDVDGDLFQIIPEKPDFKLEVGPPASYE 954
Query: 743 ---MSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTL 799
T + + + + DF +E + S+ L V + L L
Sbjct: 955 VEDTLTLERPTTIEDIADFVVEYINSDKMGL---------------------VAIQHLIL 993
Query: 800 GDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCY-------MRR 852
D+S L+L ++ A+D KSG V +DL FP R
Sbjct: 994 ADQS--NSGLHDPKCLKLAELHSKAVDF-AKSGKPVSF-QDLPKRYFPYTPDFQHKETRF 1049
Query: 853 DESVS-FESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCFD 891
D+ S +ES LG +Y +K V ++ P FD
Sbjct: 1050 DDQTSYYESPKALGVLYRMIKHIREVPERDKIVYD-PTFD 1088
>gi|346977552|gb|EGY21004.1| RNA-dependent RNA polymerase [Verticillium dahliae VdLs.17]
Length = 1444
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 96/407 (23%), Positives = 157/407 (38%), Gaps = 116/407 (28%)
Query: 469 EPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVK 528
E P Q R+ KG L + + + IR S K KA TFN LE+++
Sbjct: 674 ETPSAFQFRM----GGCKGVLAVWPEAKGMYVHIRKSQEKFKA--------TFNGLEIIR 721
Query: 529 TSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMD 588
+ T L+R I +L+ G+ F+D+L+ L + + + N G
Sbjct: 722 CARFSVAT-LNRQTITILTSLGIKSEVFMDLLQRQL-----------HGYEKAMNDQG-- 767
Query: 589 YDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKS 648
A +L G +DE + L L+ + + V E + L T +
Sbjct: 768 -----AAAVLLGRHIDENHTSLALRDLI-----NWGFMRHDVQEPFVL------TILQLW 811
Query: 649 NEVCIILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPR 708
VCI V RNP LH GD+ V++A V +L K + FP G
Sbjct: 812 RGVCI-------------VGRNPSLHPGDVRVVEAVDVPQLRHM----KNVVVFPSTGDV 854
Query: 709 SLADEIAGGDFDGDMYFVSRNPELLKHFKESERW-MSTSKNLSANKRLIDFSLEELESEL 767
+ ++GGD DGD +FV +P L+ W N++ +++D +
Sbjct: 855 DVPSMLSGGDLDGDDFFVIWDPNLIPPV-----WNFRPMDNVAPQPKVVDRDV------- 902
Query: 768 FKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDA 827
NAK L+ L+L ++ A+D
Sbjct: 903 ------------NAKDLS-----------------------------LQLAKLHSKAVDY 921
Query: 828 PKKSGIKVEVPEDLKVEKFPCYM--RRDESVSFESTSVLGTIYNTVK 872
KSG E+ +L+ ++P +M RR+++ + S + LG IY+ V+
Sbjct: 922 -VKSGDPAELGRELRARRWPHFMGERRNKNSLYHSYTALGQIYDRVQ 967
>gi|327354796|gb|EGE83653.1| RNA-dependent RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
Length = 1240
Score = 66.2 bits (160), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 127/272 (46%), Gaps = 30/272 (11%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNS--LEVVK 528
P + Q+R+ KG + L+ + +++ +RPSMIK +FN+ +E+
Sbjct: 610 PTVFQIRI---AAGAKGMVSLDSRNKGESLVLRPSMIKFPVT------TSFNAYNIEICG 660
Query: 529 TSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYG--- 585
+ + +L+ LI +L GV FL + R+ + R ++ A K +
Sbjct: 661 SGIRSLPFFLNAQLIKILEDLGVDGNVFLKLQRDEILRLRATATSTTQAAKFLEDTNIAK 720
Query: 586 --GMDYDFTSARMILSGISL---DEPYLQHRLSILMKEEKKSLQ-AGKLPVTESYYLMGT 639
G+ + + IL + L D+ +L+ + +++ + + L+ ++ V ++ L G
Sbjct: 721 SVGLPWLIS----ILEALGLRHSDDEFLRRVMELVVLIKLRDLKYRARIRVPKAVTLFGI 776
Query: 640 VDPTGILKSNEV-CIILKDGQ----VSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVG 694
+D TG LK E+ C L D + KV+V R+P +H GD+ + KA V + +
Sbjct: 777 MDETGYLKEGEIFCTSLSDKGRREVLLNPKVVVTRSPAMHPGDVQIAKAVDVPA-DSPLR 835
Query: 695 TSKYAIFFPCNGPRSLADEIAGGDFDGDMYFV 726
I F +G R L ++GGD DGD+Y V
Sbjct: 836 QLHNCIAFSQHGDRDLPSMLSGGDLDGDLYNV 867
>gi|409044334|gb|EKM53816.1| hypothetical protein PHACADRAFT_125775, partial [Phanerochaete
carnosa HHB-10118-sp]
Length = 1091
Score = 66.2 bits (160), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 106/463 (22%), Positives = 179/463 (38%), Gaps = 109/463 (23%)
Query: 311 EKKKDPSTSP--VKCYFVRMESSAFIDMGYQYILSGKTVHEAR----------------- 351
EK + P TSP + Y +R + G QY G + + R
Sbjct: 69 EKLRFPDTSPRVAQEYMIRFFKAGLFLNGTQYRFYGHSNSQLRSRSCFLRQAENDEELDA 128
Query: 352 --YMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDG 409
Y ++S + R+ L+ S+ ++D++ +P KD + + +G
Sbjct: 129 LIYRLGDFLKITSASKRAKRIGLLFSEA---KIDWNL--------QPRWTKDIDDIVVNG 177
Query: 410 EALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGE 469
E +DG G IS A K+L + + ++G
Sbjct: 178 ETF--SDGCGLISVKFA------------------------KQLSKH-----KRILYHGR 206
Query: 470 P--PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVV 527
P P + Q+R Y G KG L ++ +L + R S K A ++ ++ VV
Sbjct: 207 PYTPTVYQIR--YRG--YKGVLAIDPRLTTDHVHFRKSQKKFTATQN-------DTFSVV 255
Query: 528 KTSNQPRKTYLSRNLIALLSYGGVPEIFFL-------DILRNALDDARGVFSNKRNALKV 580
S L+ +++ LL+ G+ FL + L+ A D F L
Sbjct: 256 DHSTPFAFARLNNDIVVLLASLGISSDAFLAKQRGYHEWLQKASDGWEAAFD-----LLC 310
Query: 581 SFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAG-----KLPVTESYY 635
+ N M + R++L GI D ++ + L E S++ + V +S +
Sbjct: 311 AANRYAM-----AERLLLEGI--DSKPVRQEIRALQNSELASIRKNDRLRVRTLVPKSRF 363
Query: 636 LMGTVDPTGILKSNEV---CIILKDGQVSWEKV--LVYRNPGLHFGDIHVLKATYVKELE 690
L G DP +L+ EV +I + G + V LV RNP L+ GD L+A + L+
Sbjct: 364 LFGVCDPYSVLREGEVHVRIMIPRKGITTLTNVDVLVVRNPCLYPGDCLKLRAVHHPALD 423
Query: 691 DFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
+ + F G R+ +GGD DGD + V +P+L+
Sbjct: 424 HLID----CLVFASRGRRAAPSMSSGGDLDGDKFTVIWDPDLV 462
>gi|240277746|gb|EER41254.1| RNA-directed RNA polymerase [Ajellomyces capsulatus H143]
Length = 1317
Score = 66.2 bits (160), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 109/252 (43%), Gaps = 39/252 (15%)
Query: 523 SLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVF----------- 571
+ EVV+ S L+ L+ +L +GG+ +++R + F
Sbjct: 708 TFEVVQWSRPLSPASLNMQLLNILQHGGIRNDHIRNLIRQEMSSFYDEFLRTLLCSSGVE 767
Query: 572 --------------SNKRNALKVSFNYGGMDYDFTSARMILSG-ISLDEPYLQHRLSILM 616
S+KR + K + N+ Y + ++ +G + L PYL L+
Sbjct: 768 CRSWLQKMKWITNESSKRQS-KRTDNFFPPQYAEQAIMLLDAGFLPLKLPYLTKIFRRLL 826
Query: 617 KEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIIL----KDGQVSWE----KVLVY 668
++ +L+ K+ V++S + DP G+L+ +EV + + G S E VL+
Sbjct: 827 QDYLDNLKKLKITVSQSTFAYCVADPFGVLRPDEVHLGFSREWEHGSASTELHDIDVLLA 886
Query: 669 RNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSR 728
R P DI ++ Y EL K I FP G LA ++GGD+DGD +V
Sbjct: 887 RLPAHLATDIQKRRSVYKNELRHM----KDVIVFPTTGDTPLASLLSGGDYDGDQCWVCW 942
Query: 729 NPELLKHFKESE 740
+P +++ FK +E
Sbjct: 943 DPIIVREFKSTE 954
>gi|325093828|gb|EGC47138.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus H88]
Length = 1387
Score = 66.2 bits (160), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 109/252 (43%), Gaps = 39/252 (15%)
Query: 523 SLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVF----------- 571
+ EVV+ S L+ L+ +L +GG+ +++R + F
Sbjct: 778 TFEVVQWSRPLSPASLNMQLLNILQHGGIRNDHIRNLIRQEMSSFYDEFLRTLLCSSGVE 837
Query: 572 --------------SNKRNALKVSFNYGGMDYDFTSARMILSG-ISLDEPYLQHRLSILM 616
S+KR + K + N+ Y + ++ +G + L PYL L+
Sbjct: 838 CRSWLQKMKWITNESSKRQS-KRTDNFFPPQYAEQAIMLLDAGFLPLKLPYLTKIFRRLL 896
Query: 617 KEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIIL----KDGQVSWE----KVLVY 668
++ +L+ K+ V++S + DP G+L+ +EV + + G S E VL+
Sbjct: 897 QDYLDNLKKLKITVSQSTFAYCVADPFGVLRPDEVHLGFSREWEHGSASTELHDIDVLLA 956
Query: 669 RNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSR 728
R P DI ++ Y EL K I FP G LA ++GGD+DGD +V
Sbjct: 957 RLPAHLATDIQKRRSVYKNELRHM----KDVIVFPTTGDTPLASLLSGGDYDGDQCWVCW 1012
Query: 729 NPELLKHFKESE 740
+P +++ FK +E
Sbjct: 1013 DPIIVREFKSTE 1024
>gi|393244712|gb|EJD52224.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 1061
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 102/441 (23%), Positives = 184/441 (41%), Gaps = 70/441 (15%)
Query: 492 NKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEV-VKTSNQPRKTYLSRNLIALLSYGG 550
+ +L + +++R SMIK A +S +V V +P + YL+R LI L G
Sbjct: 490 DPRLEGRKLRLRVSMIKFDA---------LHSTDVEVANIARPARMYLNRPLIMTLETLG 540
Query: 551 VPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILS----------- 599
V F + N + A + R + N G + F R +L
Sbjct: 541 VRRHVFETLQANVVRTAHEAGDSIRRFIP---NVGKLGDRF-QLRFVLEQLVDIGCGFRD 596
Query: 600 ------GISLDEPYLQHRLSILMKEEKKSLQ-AGKLPVTESYYLMGTVDPTGILKS-NEV 651
G+ LD+ +++ + ++ E + ++ + ++ V ES+ L+G VD IL + EV
Sbjct: 597 DCSETDGVVLDDSFVRQLVKSVLWETLRDVKYSARIQVPESWTLLGKVDEHDILTNEKEV 656
Query: 652 CIILKD-----GQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKY-AIFFPCN 705
+ + D G+ L+ R+P +H GD+ ++ + D I F
Sbjct: 657 MVYVMDSDYPNGKWLEGPALICRSPVMHPGDVQMVTCISPPQGSDPSRCPLINCIIFSAK 716
Query: 706 GPRSLADEIAGGDFDGDMYFVSRNPEL-LKHFKESERWMSTSKNLSANKRLIDFSLEELE 764
G RSLA +AGGD+DGD + +S+ +L +K + L +R ++E++
Sbjct: 717 GTRSLASCLAGGDYDGDEFHISQYEQLFIKKSAHPAPAPEVVERLYVPER--QGTIEDV- 773
Query: 765 SELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDA 824
++ F ++N D + + L + D++ ++ L L +Y A
Sbjct: 774 ADFFVDYINR------------DSVGLLARQHLIIADQN--DRGVKAPKCLTLAEMYSRA 819
Query: 825 LDAPKKSGIKVEVPEDLKVEKF---PCYMRR------DESVSFESTSVLGTIYNTV--KS 873
+D P K+GI V P D+ +F P ++ + ST LG +Y V +
Sbjct: 820 VDFP-KTGIPVP-PRDMPALEFDAKPDWITNEVAAEEAAGAVYRSTKALGHLYRAVEERQ 877
Query: 874 YEAVDRSVTEIWKLPCFDDGV 894
+E + + E DDG+
Sbjct: 878 FEDLRDAPAEPQDPGALDDGI 898
>gi|113205325|gb|AAT38751.2| RNA-directed RNA polymerase, putative [Solanum demissum]
Length = 1180
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 128/561 (22%), Positives = 208/561 (37%), Gaps = 121/561 (21%)
Query: 209 QEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGD-DNILLVKF-DE 266
Q + S+ D G ++ + T F GP +N + L+ D DN L V F DE
Sbjct: 307 QPPKSPSITLDDGLVYVRRVLV-TPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDE 365
Query: 267 E--------LGGHRSSNNW--NDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDP 316
E L S+ N + Y + R+G ++G + + F F
Sbjct: 366 EWEKLYSTDLLPKASTGNGIRTNIYERILSTLRKGFVIGDKKFEFLAF------------ 413
Query: 317 STSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSK 376
S+S ++ V M +S G T ++ R + +VA Y +RL
Sbjct: 414 SSSQLRDNSVWMFASR----------PGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGS 463
Query: 377 TMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKE 436
+ K + R IE I D V G + + +DG G IS D A + +
Sbjct: 464 S-KETLSVLRHEIEVIPD----------VKVHGTSYVFSDGIGKISADFARRVAS----- 507
Query: 437 KCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLP 496
KC + P Q+R Y G KG + ++
Sbjct: 508 KCGLQYT---------------------------PSAFQIR--YGG--YKGVVAVDP-YS 535
Query: 497 PQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSN-QPRKTYLSRNLIALLSYGGVPEIF 555
+ +R SM K ++D N L+V+ S QP YL+R L+ LLS GV +
Sbjct: 536 SMKLSLRKSMSKYESDN--------NKLDVLGWSKYQP--CYLNRQLVTLLSTLGVKDDV 585
Query: 556 FLDILRNALDDARGVFSNKRNALK-VSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSI 614
+ A+D + + A + + G + + A + + EP+L L
Sbjct: 586 LEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQT 645
Query: 615 LMKEEKKSLQA-GKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQ-------------- 659
+ L+ ++ + +MG +D + L+ +V +
Sbjct: 646 FRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNS 705
Query: 660 -------VSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLAD 712
+ V+V +NP LH GDI VL+A V L V + FP G R +
Sbjct: 706 RSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVD----CVVFPQKGKRPHPN 761
Query: 713 EIAGGDFDGDMYFVSRNPELL 733
E +G D DGD+YFV + +++
Sbjct: 762 ECSGSDLDGDIYFVCWDQDMI 782
Score = 40.8 bits (94), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 805 EEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVL 864
E AM + +L ++ A+D PK +G+ E+P L+ +++P +M + + ++ S V+
Sbjct: 936 EPDMAMSDPCKKLAELFSIAVDFPK-TGVPAEIPSQLRPKEYPDFMDKPDKTTYISERVI 994
Query: 865 GTIYNTVK 872
G ++ VK
Sbjct: 995 GKLFRKVK 1002
>gi|239613137|gb|EEQ90124.1| RNA-dependent RNA polymerase [Ajellomyces dermatitidis ER-3]
Length = 1154
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 127/272 (46%), Gaps = 31/272 (11%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNS--LEVVK 528
P + Q+R+ KG + L+ + +++ +RPSMIK +FN+ +E+
Sbjct: 525 PTVFQIRI----AGAKGMVSLDSRNKGESLVLRPSMIKFPVT------TSFNAYNIEICG 574
Query: 529 TSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYG--- 585
+ + +L+ LI +L GV FL + R+ + R ++ A K +
Sbjct: 575 SGIRSLPFFLNAQLIKILEDLGVDGNVFLKLQRDEILRLRATATSTTQAAKFLEDTNIAK 634
Query: 586 --GMDYDFTSARMILSGISL---DEPYLQHRLSILMKEEKKSLQ-AGKLPVTESYYLMGT 639
G+ + + IL + L D+ +L+ + +++ + + L+ ++ V ++ L G
Sbjct: 635 SVGLPWLIS----ILEALGLRHSDDEFLRRVMELVVLIKLRDLKYRARIRVPKAVTLFGI 690
Query: 640 VDPTGILKSNEV-CIILKDGQ----VSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVG 694
+D TG LK E+ C L D + KV+V R+P +H GD+ + KA V + +
Sbjct: 691 MDETGYLKEGEIFCTSLSDKGRREVLLNPKVVVTRSPAMHPGDVQIAKAVDVPA-DSPLR 749
Query: 695 TSKYAIFFPCNGPRSLADEIAGGDFDGDMYFV 726
I F +G R L ++GGD DGD+Y V
Sbjct: 750 QLHNCIAFSQHGDRDLPSMLSGGDLDGDLYNV 781
>gi|327354916|gb|EGE83773.1| hypothetical protein BDDG_06718 [Ajellomyces dermatitidis ATCC
18188]
Length = 1096
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 84/178 (47%), Gaps = 14/178 (7%)
Query: 572 SNKRNALKVSFNYGGMDYDFTSARMILSG-ISLDEPYLQHRLSILMKEEKKSLQAGKLPV 630
S KR + S NY Y + ++ +G + L PYL L+ + +L+ K+ V
Sbjct: 565 SYKRQTKRTS-NYFPPQYAEQAVLLLDAGFLPLKLPYLTELFKRLLHDYLNNLKNLKVRV 623
Query: 631 TESYYLMGTVDPTGILKSNEVCI----ILKDGQVSWE----KVLVYRNPGLHFGDIHVLK 682
++S + DP G+LK +EV + + G V E +L+ R P DI +
Sbjct: 624 SQSTFAYCIADPFGVLKPDEVHLGFSSAWEHGSVGTELHGIDILLARLPAHLSTDIQKRR 683
Query: 683 ATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESE 740
+ Y L F K I FP G LA ++GGD+DGD +V +P +++ FK +E
Sbjct: 684 SVYKNALRHF----KDVIVFPTTGDTPLASLLSGGDYDGDQCWVCWDPIIVREFKNTE 737
>gi|330915603|ref|XP_003297095.1| hypothetical protein PTT_07392 [Pyrenophora teres f. teres 0-1]
gi|311330417|gb|EFQ94809.1| hypothetical protein PTT_07392 [Pyrenophora teres f. teres 0-1]
Length = 1415
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 17/132 (12%)
Query: 618 EEKKSLQAGKL--PVTESYYLMGTVDPTGILKSNEVCIILKDG---QVSWEK-------- 664
+ K+ LQ KL P+ +S +L G VDP G+L+ E+ + + EK
Sbjct: 939 QAKQILQESKLRVPLAKSTFLFGIVDPLGVLEPGEIQVQFSSSFADDTTDEKYLCLRDME 998
Query: 665 VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMY 724
VLV R P DI ++ EL V + FP G LA ++ GGD+DGD++
Sbjct: 999 VLVARQPACRRSDIQKVRTVIRSELSHLVDV----VVFPSKGRYPLAGKLQGGDYDGDIF 1054
Query: 725 FVSRNPELLKHF 736
++ P+L++ F
Sbjct: 1055 WICWEPQLVQPF 1066
>gi|261191013|ref|XP_002621915.1| RNA dependent RNA polymerase [Ajellomyces dermatitidis SLH14081]
gi|239590959|gb|EEQ73540.1| RNA dependent RNA polymerase [Ajellomyces dermatitidis SLH14081]
Length = 1239
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 127/272 (46%), Gaps = 31/272 (11%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNS--LEVVK 528
P + Q+R+ KG + L+ + +++ +RPSMIK +FN+ +E+
Sbjct: 610 PTVFQIRI----AGAKGMVSLDSRNKGESLVLRPSMIKFPVT------TSFNAYNIEICG 659
Query: 529 TSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYG--- 585
+ + +L+ LI +L GV FL + R+ + R ++ A K +
Sbjct: 660 SGIRSLPFFLNAQLIKILEDLGVDGNVFLKLQRDEILRLRATATSTTQAAKFLEDTNIAK 719
Query: 586 --GMDYDFTSARMILSGISL---DEPYLQHRLSILMKEEKKSLQ-AGKLPVTESYYLMGT 639
G+ + + IL + L D+ +L+ + +++ + + L+ ++ V ++ L G
Sbjct: 720 SVGLPWLIS----ILEALGLRHSDDEFLRRVMELVVLIKLRDLKYRARIRVPKAVTLFGI 775
Query: 640 VDPTGILKSNEV-CIILKDGQ----VSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVG 694
+D TG LK E+ C L D + KV+V R+P +H GD+ + KA V + +
Sbjct: 776 MDETGYLKEGEIFCTSLSDKGRREVLLNPKVVVTRSPAMHPGDVQIAKAVDVPA-DSPLR 834
Query: 695 TSKYAIFFPCNGPRSLADEIAGGDFDGDMYFV 726
I F +G R L ++GGD DGD+Y V
Sbjct: 835 QLHNCIAFSQHGDRDLPSMLSGGDLDGDLYNV 866
>gi|330794390|ref|XP_003285262.1| hypothetical protein DICPUDRAFT_149105 [Dictyostelium purpureum]
gi|325084804|gb|EGC38224.1| hypothetical protein DICPUDRAFT_149105 [Dictyostelium purpureum]
Length = 2292
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 124/285 (43%), Gaps = 41/285 (14%)
Query: 486 KGTLLLN----------KKLP--PQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQP 533
KG ++LN K +P P I IR SM K +D SD +T +LE++ S
Sbjct: 1276 KGVVVLNDTDSISLGNGKSIPMDPTCIYIRESMTKFM--KDPSDDETHRTLEIISVSTTS 1333
Query: 534 RKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMD--YDF 591
R L+R I LL G E L L +L++ N + + + + ++ Y
Sbjct: 1334 R-CKLNRQAINLLLNAGTEESSILSFLDKSLNE------NAQTLVDIGLSKDLLNEFYPN 1386
Query: 592 TSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEV 651
S + + + L+H + L++ + K + V +S ++G D +G L N+V
Sbjct: 1387 ISEYELFNDYYIRTIVLKHFKTKLLRIQDKC----HIEVEDSRNVLGVTDFSGKLGPNQV 1442
Query: 652 CIILKD---------GQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFF 702
+ + D +V +V V +NP H GDI +L+A + L + +FF
Sbjct: 1443 YLEVADFDDNNNIIRSKVITGRVAVLKNPCHHPGDIRILEAVDIPLLHG----KRNILFF 1498
Query: 703 PCNGPRSLADEIAGGDFDGDMYFVSRNPELLK-HFKESERWMSTS 746
NG E +G D DGD YF+ + L+ K S+ ++ S
Sbjct: 1499 SINGEVPNFKECSGSDLDGDRYFIVYDNVLINDKMKNSDPYLGES 1543
>gi|261202284|ref|XP_002628356.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis SLH14081]
gi|239590453|gb|EEQ73034.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis SLH14081]
Length = 1382
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 84/178 (47%), Gaps = 14/178 (7%)
Query: 572 SNKRNALKVSFNYGGMDYDFTSARMILSG-ISLDEPYLQHRLSILMKEEKKSLQAGKLPV 630
S KR + S NY Y + ++ +G + L PYL L+ + +L+ K+ V
Sbjct: 851 SYKRQTKRTS-NYFPPQYAEQAVLLLDAGFLPLKLPYLTELFKRLLHDYLNNLKNLKVRV 909
Query: 631 TESYYLMGTVDPTGILKSNEVCI----ILKDGQVSWE----KVLVYRNPGLHFGDIHVLK 682
++S + DP G+LK +EV + + G V E +L+ R P DI +
Sbjct: 910 SQSTFAYCIADPFGVLKPDEVHLGFSSAWEHGSVGTELHGIDILLARLPAHLSTDIQKRR 969
Query: 683 ATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESE 740
+ Y L F K I FP G LA ++GGD+DGD +V +P +++ FK +E
Sbjct: 970 SVYKNALRHF----KDVIVFPTTGDTPLASLLSGGDYDGDQCWVCWDPIIVREFKNTE 1023
>gi|239612171|gb|EEQ89158.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis ER-3]
Length = 1382
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 84/178 (47%), Gaps = 14/178 (7%)
Query: 572 SNKRNALKVSFNYGGMDYDFTSARMILSG-ISLDEPYLQHRLSILMKEEKKSLQAGKLPV 630
S KR + S NY Y + ++ +G + L PYL L+ + +L+ K+ V
Sbjct: 851 SYKRQTKRTS-NYFPPQYAEQAVLLLDAGFLPLKLPYLTELFKRLLHDYLNNLKNLKVRV 909
Query: 631 TESYYLMGTVDPTGILKSNEVCI----ILKDGQVSWE----KVLVYRNPGLHFGDIHVLK 682
++S + DP G+LK +EV + + G V E +L+ R P DI +
Sbjct: 910 SQSTFAYCIADPFGVLKPDEVHLGFSSAWEHGSVGTELHGIDILLARLPAHLSTDIQKRR 969
Query: 683 ATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESE 740
+ Y L F K I FP G LA ++GGD+DGD +V +P +++ FK +E
Sbjct: 970 SVYKNALRHF----KDVIVFPTTGDTPLASLLSGGDYDGDQCWVCWDPIIVREFKNTE 1023
>gi|46133873|ref|XP_389252.1| hypothetical protein FG09076.1 [Gibberella zeae PH-1]
Length = 1721
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 91/210 (43%), Gaps = 25/210 (11%)
Query: 537 YLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARM 596
+L+ I LL G+ + L R D R ++ R+A ++ D + R+
Sbjct: 294 FLNDETIILLHALGISQETLLAKQRRHFDLLRNAKTDHRDAFRLLSYSNRPDL---AERV 350
Query: 597 ILSGISLDEPYLQHRLSILMKE--EKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCI- 653
+L G +P + ++ +K+ KK Q ++ V +S L G D +L+ EV +
Sbjct: 351 LLDGSDSIKPQINSIVNAELKKMLNKKDGQRCRIFVQKSRLLFGVCDAWDVLREGEVAVK 410
Query: 654 ----------ILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFP 703
LK+ +V+ V RNP LH GD K EL I F
Sbjct: 411 VTMEETGVPHALKNTEVT-----VIRNPCLHPGDWQKFKVVERPELAHLTD----CIVFS 461
Query: 704 CNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
G R AD ++GGD DGD +FV +P+L+
Sbjct: 462 TRGKRPAADMMSGGDLDGDTFFVCWDPDLI 491
>gi|142942513|gb|ABO93004.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 841
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 129/561 (22%), Positives = 210/561 (37%), Gaps = 121/561 (21%)
Query: 209 QEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGD-DNILLVKF-DE 266
Q + S+ D G ++ + T F GP +N + L+ D DN L V F DE
Sbjct: 341 QPPKSPSITLDDGLVYVRRVLV-TPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDE 399
Query: 267 E--------LGGHRSSNNW--NDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDP 316
E L S+ N + Y + R+G ++G + + F F
Sbjct: 400 EWEKLYSTDLLPKASTGNGIRTNIYERILSTLRKGFVIGDKKFEFLAF------------ 447
Query: 317 STSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSK 376
S+S ++ V M +S G T ++ R + +VA Y +RL
Sbjct: 448 SSSQLRDNSVWMFASR----------PGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGS 497
Query: 377 TMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKE 436
+ K + R IE I D V G + + +DG G IS D A + +
Sbjct: 498 S-KETLSVLRHEIEVIPD----------VKVHGTSYVFSDGIGKISADFARRVAS----- 541
Query: 437 KCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLP 496
KC + P Q+R Y G KG + ++
Sbjct: 542 KCGLQYT---------------------------PSAFQIR--YGG--YKGVVAVDP-YS 569
Query: 497 PQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSN-QPRKTYLSRNLIALLSYGGVPEIF 555
+ +R SM K ++D N L+V+ S QP YL+R L+ LLS GV +
Sbjct: 570 SMKLSLRKSMSKYESDN--------NKLDVLGWSKYQP--CYLNRQLVTLLSTLGVKDDV 619
Query: 556 FLDILRNALDDARGVFSNKRNALK-VSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSI 614
+ A+D + + A + + G + + A + + EP+L L
Sbjct: 620 LEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQT 679
Query: 615 LMKEEKKSLQA-GKLPVTESYYLMGTVDPTGILKSNEVCIILKD-GQVSWEK-------- 664
+ L+ ++ + +MG +D + L+ +V + G + +
Sbjct: 680 FRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNS 739
Query: 665 ------------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLAD 712
V+V +NP LH GDI VL+A V L V + FP G R +
Sbjct: 740 RSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVD----CVVFPQKGKRPHPN 795
Query: 713 EIAGGDFDGDMYFVSRNPELL 733
E +G D DGD+YFV + +++
Sbjct: 796 ECSGSDLDGDIYFVCWDQDMI 816
>gi|452838162|gb|EME40103.1| hypothetical protein DOTSEDRAFT_138071 [Dothistroma septosporum
NZE10]
Length = 947
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 83/354 (23%), Positives = 155/354 (43%), Gaps = 54/354 (15%)
Query: 467 YGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEV 526
YG LL L KG + L+ +LP + + IRP+M K + T++ LE+
Sbjct: 321 YGSKKLLKPTALQIRFQGSKGMVALDSRLPGKRLMIRPNMKKYET------AATWD-LEI 373
Query: 527 VKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNA------------------LDDAR 568
+ +P L+R I ++ G P F+D L+NA LDD+
Sbjct: 374 CGAAFRPLPMVLNRPFIKVMEDLGTPISTFMD-LQNAAMVHLQRMTASCINTAIFLDDSE 432
Query: 569 GVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQ-AGK 627
+ + + L G+DY + ++ + + + + + ++ G+
Sbjct: 433 ACRATRMSELIRYLGQIGLDYHH-------------DHFMYSVVEMAVVAKLRDIKYKGR 479
Query: 628 LPVTESYYLMGTVDPTGILKSNEVCIILKDGQ-----VSWEKVLVYRNPGLHFGDIHVLK 682
+PV + L G +D TG L E+ ++ + + V ++V R+P LH GD+ V+
Sbjct: 480 IPVEQGVTLYGIMDETGYLGPREIYVVTEKAEGGKKVVVANDIIVTRSPALHPGDMQVVN 539
Query: 683 ATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPEL--LKHFKESE 740
A V + S + F +G R L ++ GGD DGD+Y + +P+L ++ F+ ++
Sbjct: 540 AVDVPQTSPLKRLSN-VVVFSKHGDRDLPSQLGGGDLDGDLYNIIWDPKLRPMRTFQPAD 598
Query: 741 RWMSTSKNLSAN---KRLIDFSLEELESELFKLFLNTRFCPSNAKS---LAADC 788
++ L + K + DF + +ES++ + T ++ +S L DC
Sbjct: 599 YPRVSAVQLDRDVVRKDMSDFFVTFMESDVLGMICTTHLQLADQRSAGVLDPDC 652
>gi|402590834|gb|EJW84764.1| RNA-dependent RNA polymerase, partial [Wuchereria bancrofti]
Length = 1136
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 111/283 (39%), Gaps = 55/283 (19%)
Query: 614 ILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCI--------ILKDGQVSWEKV 665
I+ + K +Q LP + + G +D TG+L+ +V I +L V V
Sbjct: 420 IIFRIASKQIQ-NFLPCSMGRTMYGVIDDTGLLQYGQVFIQYSSSMQYVLTKKIVYTGSV 478
Query: 666 LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYF 725
+V +NP GD+ + +A Y L I FP GPR +DE+AG D DGD Y
Sbjct: 479 MVTKNPCHVAGDVRMFEAVYQDALLHLCDV----IVFPRYGPRPHSDEMAGSDLDGDEYT 534
Query: 726 VSRNPELLKHFKESERWMSTSKNLSA-------NKRLIDFSLEELESELFKLFLNTRFCP 778
V + EL F+ +ER M K++ + +IDF L+ L +
Sbjct: 535 VIFDKELF--FENNERAMFFPKSIPSECGTPPTTGDMIDFFLKYLSQDSIGRM------- 585
Query: 779 SNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVP 838
SNA + C D+ A + A A+D PK +
Sbjct: 586 SNAHLIIEIC------------DDIARKCAV--------------AVDFPKTGVAAKPLL 619
Query: 839 EDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSV 881
+ E P YM+ S+ S +LG +Y + E + V
Sbjct: 620 SHEQCEVMPDYMQNMIRPSYRSKRLLGELYRKARRVEDISEIV 662
>gi|302682736|ref|XP_003031049.1| hypothetical protein SCHCODRAFT_57049 [Schizophyllum commune H4-8]
gi|300104741|gb|EFI96146.1| hypothetical protein SCHCODRAFT_57049 [Schizophyllum commune H4-8]
Length = 739
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 123/282 (43%), Gaps = 49/282 (17%)
Query: 415 TDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLM 474
TDG G +S ++A+ T V + + +R+++ + + A F
Sbjct: 462 TDGVGTMSREMAVDAYTEVNRYR-------KRAMNGRGIPAAF----------------- 497
Query: 475 QVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPR 534
Q+R KG L ++ L + + +R SMIK D +LE+ + ++P
Sbjct: 498 QIRFM----GSKGMLSVDHTLQGRVVCLRDSMIKF-------DCPNNRNLEIARVFDRPA 546
Query: 535 KTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSA 594
K YL+R LI LL GVP FL A+ DA + A ++ G+ F
Sbjct: 547 KYYLNRPLIMLLEGLGVPYETFLQHQDAAVQDAYSSTESLTKAARM-LEALGLGTSFRLP 605
Query: 595 RMILSGISL-------DEPYLQHRLSILMKEEKKSLQ-AGKLPVTESYYLMGTVDPTGIL 646
++L+ + L D + L + + L+ ++P+ +Y L+G D G L
Sbjct: 606 SLLLNLVKLCNIENLGDNKFYSRMLEFAIHHVLRELKNHARIPIPGAYTLVGVADVHGYL 665
Query: 647 KSNEV--CIILKDG-QVSWEK--VLVYRNPGLHFGDIHVLKA 683
K E+ CI D +V + + +L+ R+P +H GD+ + +A
Sbjct: 666 KEWEIFACIKAHDSDEVIYLEGDILIPRSPSIHPGDVQIARA 707
>gi|167375406|ref|XP_001733628.1| RNA-dependent RNA polymerase [Entamoeba dispar SAW760]
gi|165905172|gb|EDR30241.1| RNA-dependent RNA polymerase, putative [Entamoeba dispar SAW760]
Length = 1026
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 121/280 (43%), Gaps = 32/280 (11%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P Q+R VKG L +++ +TI RPS IK++A +T L V++
Sbjct: 456 PYAFQIRF----AGVKGVLTVDRLDMTETIYFRPSQIKIEAL-----PKTIQKLRVIQIP 506
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYD 590
Q R ++ L L Y +P F+ + L V N R + + +
Sbjct: 507 -QFRSGRMNEQLALGLEYLQIPPSNFISSAKQYLKKYFSVTPN-REIISLFQRFTNNPVI 564
Query: 591 FTSARMILSGIS----LDEPYLQH-----RLSILMKEEKKSLQAGKLPVTESYYLMGTVD 641
+ +MI++ +EP+++ R+S+L EK K + S +LMG +D
Sbjct: 565 EVALKMIMASNGNQKIYEEPFIRATSLVLRMSLL--SEKTDFI--KFDIDNSAFLMGVMD 620
Query: 642 PTGILKSNEVCIILKDGQVSW--EKVLVYRNPGLHFGDIHVLKATYVK-ELEDFVGTSKY 698
+G+L+ EV I + ++ ++LV + P H GD +L K LE G +
Sbjct: 621 ESGLLEEGEVFIQVTSPTITIPSSRLLVVKFPATHPGDFVLLNNVVDKINLEKKKGYERL 680
Query: 699 -----AIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
I F G R ++++GGD DGD Y + NP L
Sbjct: 681 TYLRDVIVFSSKGNRPDPNKLSGGDLDGDEYLIIWNPLFL 720
>gi|290988738|ref|XP_002677050.1| predicted protein [Naegleria gruberi]
gi|284090655|gb|EFC44306.1| predicted protein [Naegleria gruberi]
Length = 553
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 93/379 (24%), Positives = 145/379 (38%), Gaps = 93/379 (24%)
Query: 416 DGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQ 475
DG G +S+ + + ++ C+ D +SID K Y P Q
Sbjct: 220 DGKGIVSDGIGMISYSFAKAVCCSLRD---QSIDGK---------------YVHIPRAFQ 261
Query: 476 VRLFYNGTAVKGTLLL--NKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQP 533
+R KG L + +K + I +R SM K + + FN LE+V+ N+
Sbjct: 262 IRFL----GFKGMLTVCPDKIMNGNQIILRESMKKFEGN------PLFNKLEIVEGLNES 311
Query: 534 RKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTS 593
++R +I LLS V + FL+ + AL AR N
Sbjct: 312 DTANINRQIIILLSSLQVKDEVFLNAQKKAL--ARNKCRN-------------------- 349
Query: 594 ARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCI 653
DE + R I +EK K + +S G +D T LK N+V +
Sbjct: 350 ----------DEEF---RARIKNAKEKT-----KFFMKDSVIAKGILDETKQLKDNQVIV 391
Query: 654 ILKDGQV--SWEKVLVYRNPGLHFGDIHVLKAT-----YVKELEDFVGTSKYAIFFPC-- 704
I K+G++ +KV+V+RNPGLH D+ + + Y K V I F
Sbjct: 392 ITKNGRMVPGGKKVIVFRNPGLHPRDVRIFETVSIPDYYQKWFGHEVDLKGSVIIFAADC 451
Query: 705 ---NGPRSLAD----EIAGGDF-DGDMYFVSRNPELLKHFKESERWMSTSKNLSAN---- 752
N P L + I+ F DGD +F S N E++ + + W S +
Sbjct: 452 QQHNIPGELGNFHLFSISNLQFKDGDRFFTSWNTEIIPQAQYIQSWWSKANEFGHTLKQF 511
Query: 753 --KRLIDFSLEELESELFK 769
K+ ++ +L L K
Sbjct: 512 DLKKCVNTALSNFSHHLLK 530
>gi|392564352|gb|EIW57530.1| RdRP-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 1232
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 139/628 (22%), Positives = 236/628 (37%), Gaps = 127/628 (20%)
Query: 221 GKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGD--DNILLVKFDEELGGHRSSNNWN 278
G +H I T +GPY Q+ + R+ D +N + V+F +E +R + W
Sbjct: 417 GTLKCFHV-IVTPTRILLEGPYDTQS-NRVVRKYHDYRENFVRVEFRDE---NRMAFRWP 471
Query: 279 DSYS-------KYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESS 331
+ ++ I +EG+ + R + F + + G E +F M
Sbjct: 472 KEVNSASLIEERFGTILKEGLEIAGRRFRFLGYSNSGLREHT---------TWF--MSDF 520
Query: 332 AFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIER 391
D G +L+ + ++ F +V T+ S Y +R++ S T D S R
Sbjct: 521 EHPDEG---LLTPDRIRDSLGNFSNVNTIPS--KYAARIAQAFSGT-----DPS----VR 566
Query: 392 IEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRK 451
I + D+ ++ K HTDG G IS L R
Sbjct: 567 IRRDQWDDQLADLGKK---PFWHTDGQGTISVGL------------------------RD 599
Query: 452 ELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKA 511
E+ ++ P Q+R KG +++++ L +++RP+M K KA
Sbjct: 600 EIWDVLVKAQPDKAKLTLKPSAYQIRFL----GFKGIVVVDETLEGVYMRLRPTMNKFKA 655
Query: 512 DRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDI--LRNAL----D 565
+D + +E+ K P L R LI +L GV + L++ L A+
Sbjct: 656 H---ADDEADAEIEIAKAFIYPGTARLCRPLIMVLEDLGVRKEAMLELQNLAKAVVVTAS 712
Query: 566 DARGVFSN--KRNALKVSFNYGGMDYDFTSARMIL-----SGISLDE-------PYLQHR 611
D+ G N +++AL SF + A M + S +D Y QH
Sbjct: 713 DSMGETINLLRKHALGDSFGLRHILEHLRRAGMCMRREAGSPDVMDNDFILQLVKYAQHH 772
Query: 612 LSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNE----------------VCIIL 655
+ +K + ++P+ ++ L+G D E C+
Sbjct: 773 ILHEIKHD------ARIPIPNAHQLVGVADEGPAYMQREEYKDKEVFCLGMGEIFACVEQ 826
Query: 656 KDGQVSW---EKVLVYRNPGLHFGDIHVLKATYVKELED---FVGTSKYAIFFPCNGPRS 709
DG +V + R+P +H GD+ ++A K +D + + P G RS
Sbjct: 827 PDGGEPLYVKGQVTISRSPHIHPGDVQRVRAIG-KPPDDKLCLFRNLRNVVVLPSVGERS 885
Query: 710 LADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSK-----NLSANKRLIDFSLEELE 764
LA +AGGD DGD + V ++P LL S + +F LE ++
Sbjct: 886 LASCLAGGDVDGDEFLVIKDPTLLPTTNADPASYDAGDPRDIGRPSTIDDICNFLLEYMQ 945
Query: 765 SELFKLFLNTRFCPSNAKSLAADCWQAV 792
S++ L + ++ LA C QAV
Sbjct: 946 SDVMGLVADQHLKIADCMVLARLCSQAV 973
>gi|296416873|ref|XP_002838094.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295633999|emb|CAZ82285.1| unnamed protein product [Tuber melanosporum]
Length = 1218
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 141/649 (21%), Positives = 242/649 (37%), Gaps = 146/649 (22%)
Query: 222 KTHM---YHCHISTKGNCTFKGPYLNQTRTHLQRELGDDN--ILLVKFDEELGGHRSSNN 276
K HM +H I+ G C F GP L + + + R+ D + + V F EE G +
Sbjct: 434 KKHMALVHHVSITPAG-CYFFGP-LPEPQNRVLRKYPDHHEYFIRVTFCEEDGEPLLFQH 491
Query: 277 WNDSYSKYNEIAR----EGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSA 332
D Y R EGI + R + F F S C+F+ +
Sbjct: 492 KVDQSPIYKNQFRFYLSEGITIAGRKFEFLGFSSS---------SLRTQSCWFM---APF 539
Query: 333 FIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERI 392
++D Y L K V F +++ Y +R+ S T + I++
Sbjct: 540 YLDGKY---LDPKIVTSRLGDF---SSITCPGKYAARVGQAFSDT------YGSIDVRAE 587
Query: 393 EDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKE 452
+ D V ++G +DG G IS+ L +DR
Sbjct: 588 HEVEIPD-----VVRNGRTF--SDGVGTISQQL----------------------LDRVW 618
Query: 453 LEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKAD 512
E +ES P + Q+R KG + L+ +L +RPSMIK +
Sbjct: 619 RE--------SESLRKTRPTVFQIRF----AGAKGVVSLDTRLVGDKFCLRPSMIKFRGS 666
Query: 513 RDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFS 572
D +E+ +++ YL+R LI +L GV E F+ + + A++D R +
Sbjct: 667 SD-------RKIEICNSADW-LPMYLNRPLIKVLEDIGVFESTFMTLQKEAIEDLRQSTT 718
Query: 573 NKRNALKVSFNYGGMDYDFTSARMILSGISL---------------DEPYLQHRLSILMK 617
+ NA R+ + I L D+ +L+ + +
Sbjct: 719 SVANAANF----------LKRQRIASTAIRLPWVIESLNNLGFNFRDDHFLEQAFELSLI 768
Query: 618 EEKKSLQ-AGKLPVTESYYLMGTVDPTGILKSNEVCIIL--KDGQVSWE---KVLVYRNP 671
+SL+ ++PV + L+G +D TG L+ ++ + + +D S +VL+ R+P
Sbjct: 769 TSLRSLKHKARIPVKKGMTLVGVMDETGYLQEGQIYVTVQARDKSTSESIAGRVLITRSP 828
Query: 672 GLHFGDIHVLKATYVKEL--EDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRN 729
H GD+ + A +L + + + + FP G R + + D +Y
Sbjct: 829 VHHPGDVQMALAIGTNQLPPDSPLRALRNCVAFPQRGERDMPSMLGAPDLYNIIY--DAR 886
Query: 730 PELLKHFKESERWMSTSKNLS---ANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAA 786
L + +E +K+L ++DF LE +E+ L +
Sbjct: 887 FSLKTTYDPAEYPKVPTKDLGRPVKTSDIVDFFLEFMENNLLGM---------------- 930
Query: 787 DCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKV 835
+ R L D+ E + L+L + A+D P K+GIKV
Sbjct: 931 -----ISSRHLITADKKVE--GVHHPDCLKLAELASTAVDFP-KTGIKV 971
>gi|17508365|ref|NP_493057.1| Protein RRF-2 [Caenorhabditis elegans]
gi|13655331|emb|CAC35914.1| Protein RRF-2 [Caenorhabditis elegans]
Length = 1579
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 86/328 (26%), Positives = 137/328 (41%), Gaps = 62/328 (18%)
Query: 502 IRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILR 561
RPS IK + + L D +E+VK S+ P L++ LI +L V E+ L+ R
Sbjct: 694 FRPSQIKFEGKQILGD-----QVEMVKYSS-PVLVALNKPLINILD--QVSEMQSLECHR 745
Query: 562 NA-------LDDARGVFSNK-------RNALKVSFNYGGMDYDFTSARMILSGISLDEPY 607
+D F+ + RN LK +DY T LS +EP+
Sbjct: 746 RITSRIEELMDLQTLSFAKQMTDEACFRNKLKEFPRRIDIDYLRTIWGFTLS----NEPF 801
Query: 608 LQH------RLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCI-------- 653
+ + +I + K+ +Q +P ++G VD TGIL+ +V +
Sbjct: 802 FRSLVKASIKFAITKQLFKEQIQ---IPSELGRSMLGVVDETGILQYGQVFVQYTKNHRN 858
Query: 654 ILK---------DGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPC 704
IL ++ VL+ +NPG+ GD+ + +A + EL + FP
Sbjct: 859 ILPPRDSNRKVLGSEIVTGTVLLTKNPGIVPGDVRIFEAVDIPELHHLCD----VVVFPQ 914
Query: 705 NGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSA------NKRLIDF 758
+GPR DE+AG D DGD Y V + +LL E + KNL + + D
Sbjct: 915 HGPRPHPDEMAGSDLDGDEYSVIWDQKLLLERNEEAFDFAVEKNLQTYEWEDIDDLMRDV 974
Query: 759 SLEELESELFKLFLNTRFCPSNAKSLAA 786
+E L+ +L L N+ S+ L +
Sbjct: 975 YVEYLKKDLVGLIANSHLHNSDQYGLTS 1002
>gi|115400193|ref|XP_001215685.1| predicted protein [Aspergillus terreus NIH2624]
gi|114191351|gb|EAU33051.1| predicted protein [Aspergillus terreus NIH2624]
Length = 1285
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 72/146 (49%), Gaps = 16/146 (10%)
Query: 607 YLQHRLSILMKEEKKSLQAG-KLPVTESYYLMGTVDPTGILKSNEVCIIL----KDGQVS 661
YL+HRL ++E + + + V S Y DP G+LK +EV +D Q
Sbjct: 799 YLRHRLRNCLRELLERYENELHIEVPLSTYAFCIADPYGVLKPDEVHFGFSSNWRDPQGQ 858
Query: 662 WEK-------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEI 714
+E VLV R P DI ++A + EL F K I FP G LA ++
Sbjct: 859 FEDNLLDGMDVLVARVPAHFPSDIQRVRAVWKPELRHF----KDVIVFPTTGDVPLAHKL 914
Query: 715 AGGDFDGDMYFVSRNPELLKHFKESE 740
+GGD+DGD +V + E++++F+ S+
Sbjct: 915 SGGDYDGDTPWVCWDQEIVQNFQNSD 940
>gi|395333779|gb|EJF66156.1| RdRP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 1220
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 148/662 (22%), Positives = 264/662 (39%), Gaps = 129/662 (19%)
Query: 219 DSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELG-DDNILLVKF-DEELGGHRSSNN 276
DSGK YH T +GPY++Q+ +++ G +D+ L V F DE+ +R +
Sbjct: 415 DSGKFKCYHVTF-TPTRILLEGPYVSQSNRVIRQFAGYEDHFLRVDFRDEDRLQYRWARE 473
Query: 277 WNDSY---SKYNEIAREGILVGLRCYHFFVFKDGGKEEKK---KDPSTSPVKCYFVRMES 330
+ + + + G +G R + F + E +P P + Y
Sbjct: 474 VDGTTLLEERVGGTLKHGFDLGGRHFEFLAYSQSALREHAVWFMNPFDHPTRGY------ 527
Query: 331 SAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIE 390
+ G+ + ++ F V + + + Y +RL+ + T V S E
Sbjct: 528 -----------VDGQRIRDSLGDFSKV--IDAPSKYAARLAQAFTAT-DPSVSISHDQCE 573
Query: 391 RIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDR 450
+ D E + TDG G IS L +++ CT + R +R
Sbjct: 574 EMSD------------MGEEPYLFTDGVGTISPKLG----DMIWEALCTAKEDLRRH-ER 616
Query: 451 KELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVK 510
K P Q+R KG + ++++L +++RPSM K
Sbjct: 617 K-------------------PSAYQIRYL----GYKGMVGIDERLEGVKMRLRPSMNKFD 653
Query: 511 A-DRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALD---D 566
A D+D++ +E+ + + P +YL+R+L+ +L GV + F + A++
Sbjct: 654 ALDKDVA------PIEIARWFDNPGTSYLNRSLVMILEDRGVDKAVFQKLQDKAVEAVVT 707
Query: 567 ARGVFSNKRNALKVSFNYG---GMDYDFTSARMILSGI--------SLDEPYLQHRLSIL 615
A LK + N G G+ Y + I G+ +L++ +L +
Sbjct: 708 ASDSIDGTVTLLK-THNIGLSLGLPYILRGLKAIGMGMKEKEVTTGTLNDTFLYSLIGYA 766
Query: 616 MKEEKKSLQ-AGKLPVTESYYLMGTVD------PTGI-----LKSNEVCIILK---DGQV 660
+ ++ + ++P+ +SY L+G D G+ LK N++ ++ D +
Sbjct: 767 QAHILRDMKHSARIPIPDSYLLVGLADEGPAYEAEGVQNVFCLKENQIFACVQNETDDEP 826
Query: 661 SWEK--VLVYRNPGLHFGDIHVLKATYVKELED---FVGTSKYAIFFPCNGPRSLADEIA 715
++ + V++ R+P +H GD+ + A K +D F + + P G RSLA +
Sbjct: 827 TYLQGVVVISRSPVVHPGDVQRVYAI-GKPPDDKVCFFRNLRNVVVLPSVGKRSLASMLG 885
Query: 716 GGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTR 775
GGD DGD+Y V + LL +E S KRL D ++
Sbjct: 886 GGDLDGDLYSVIKYSPLLP----TEHADPGSYEPVGTKRLPDGRQSTVDD---------- 931
Query: 776 FCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKV 835
C + L +D + DR L + D+S E L L + A+D P K+GI V
Sbjct: 932 ICDFVVEYLNSDVLGLLSDRHLIIADQSRE--GTNDPACLDLAQLCSQAVDYP-KNGIPV 988
Query: 836 EV 837
++
Sbjct: 989 DI 990
>gi|336388940|gb|EGO30084.1| RNA-directed RNA polymerase [Serpula lacrymans var. lacrymans S7.9]
Length = 1246
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 113/277 (40%), Gaps = 32/277 (11%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQT---IQIRPSMIKVKADRDLSDGQTFNSLEVV 527
P + Q+R Y G KG L+L+ KL + ++ R SM K D S VV
Sbjct: 193 PTVFQIR--YLG--YKGVLMLDPKLDEEKKFLVKFRKSMKKFSTTED-------KSFSVV 241
Query: 528 KTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGM 587
S L+ +++ LLS G+ + F R + G + A+ + G
Sbjct: 242 GYSQPYSFGRLNNDIVVLLSSLGISDEKFQAKQRAYFEWIEGASHDAVKAIDFLSSLGKY 301
Query: 588 DYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVT-----ESYYLMGTVDP 642
+ R++L G +D P + + L E P T +S L G DP
Sbjct: 302 SL---AERLLLDG--MDSPAVSKEIRALQNAEVAQFLKNNRPRTRMIIHKSRLLYGVCDP 356
Query: 643 TGILKSNEVCIILKDGQVSWEK-----VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSK 697
G+LK +V I + + +LV RNP LH GD L+A L +
Sbjct: 357 YGVLKEGQVQIRITSSRGGATTPINGDILVVRNPCLHPGDCLKLRAVDHPSLSHLLDCIV 416
Query: 698 YA-IFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
+A + P + P +GGD DGD +FV +P+L+
Sbjct: 417 FATVGRPGHQPAPAMS--SGGDLDGDKFFVCWDPDLV 451
>gi|308510538|ref|XP_003117452.1| CRE-RRF-3 protein [Caenorhabditis remanei]
gi|308242366|gb|EFO86318.1| CRE-RRF-3 protein [Caenorhabditis remanei]
Length = 1779
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 81/191 (42%), Gaps = 35/191 (18%)
Query: 628 LPVTESYYLMGTVDPTGILKSNEVCI-------------ILKDGQVSWEKVLVYRNPGLH 674
LP + G VD TG+L+ +V I ILK G KVL+ +NP
Sbjct: 1054 LPPNLGRSMYGVVDETGLLQYGQVFIQYSPTIRQTSDTPILKTG-----KVLITKNPCHV 1108
Query: 675 FGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLK 734
GD+ V +A + L V + FP +GPR DE+AG D DGD Y + + ++L
Sbjct: 1109 PGDVRVFEAVWQPALAHLVDV----VVFPRHGPRPHPDEMAGSDLDGDEYSIIWDQDMLL 1164
Query: 735 HFKESERWMSTSKNLSANKR-----LIDFSLEELESELFKLFLNTRFCPS--------NA 781
+ E+ +S + +K +++F L L+ + N + N
Sbjct: 1165 DYNETAMVFPSSSSQEEDKEPTTDDMVEFFLRYLQQDSIGRMSNAHLVYADLNGLFHENC 1224
Query: 782 KSLAADCWQAV 792
S+A C AV
Sbjct: 1225 HSIALKCAVAV 1235
>gi|170584472|ref|XP_001897023.1| RNA dependent RNA polymerase family protein [Brugia malayi]
gi|158595558|gb|EDP34101.1| RNA dependent RNA polymerase family protein [Brugia malayi]
Length = 1542
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 121/302 (40%), Gaps = 58/302 (19%)
Query: 599 SGISL-DEPYLQHRLSILMKEE-KKSLQAGK--LPVTESYYLMGTVDPTGILKSNEVCII 654
+GI+ +EP+ + L+ + + K L K LP + + G +D TG+L+ +V +
Sbjct: 805 NGITFTNEPFFRSLLTAIHRYNIKLHLSKSKIFLPCSMGRTMYGVIDDTGLLQYGQVFVQ 864
Query: 655 LKDGQ--VSWEK------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNG 706
VS +K V+V +NP GD+ + +A Y L I FP G
Sbjct: 865 YSSSMQYVSAKKIVYTGSVMVTKNPCHVAGDVRMFEAVYQDALLHLCDV----IVFPRYG 920
Query: 707 PRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNL-------SANKRLIDFS 759
PR +DE+AG D DGD Y V + EL F+ +ER M +L + +IDF
Sbjct: 921 PRPHSDEMAGSDLDGDEYTVIFDKELF--FENNERAMFFPNSLPTEYGTPATTGDMIDFF 978
Query: 760 LEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLIN 819
L+ L + SNA + C D+ A + A
Sbjct: 979 LKYLSQDSIGRM-------SNAHLIIEVC------------DDIARKCAV---------- 1009
Query: 820 IYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDR 879
A+D PK + + E P YM+ S+ S +LG +Y + E +
Sbjct: 1010 ----AVDFPKTGVAAKPLLSHEQCEVMPDYMQNMIKPSYRSKRLLGELYRKARRVEDISE 1065
Query: 880 SV 881
V
Sbjct: 1066 IV 1067
>gi|268530338|ref|XP_002630295.1| C. briggsae CBR-RRF-3 protein [Caenorhabditis briggsae]
Length = 1766
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 80/191 (41%), Gaps = 35/191 (18%)
Query: 628 LPVTESYYLMGTVDPTGILKSNEVCI-------------ILKDGQVSWEKVLVYRNPGLH 674
LP + + G VD TG+L+ +V I +LK G KVL+ +NP
Sbjct: 1041 LPPSLGRSMYGVVDETGLLQYGQVFIQYSPTIRQTSPEPLLKTG-----KVLITKNPCHV 1095
Query: 675 FGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLK 734
GD+ V A + L V + FP +GPR DE+AG D DGD Y + + E+L
Sbjct: 1096 PGDVRVFDAVWQPALAHLVDV----VVFPRHGPRPHPDEMAGSDLDGDEYSIIWDQEMLL 1151
Query: 735 HFKESERWMSTSKNLSANKR-----LIDFSLEELESELFKLFLNTRFC--------PSNA 781
+ E+ +S+ +K +++F L ++ + N N
Sbjct: 1152 DYNETAMVFPSSQAQEEDKEPTTDDMVEFFLRYMQQDSIGRMSNAHLVYADLHGLFSENC 1211
Query: 782 KSLAADCWQAV 792
S+A C AV
Sbjct: 1212 ASIAQKCAVAV 1222
>gi|225557198|gb|EEH05485.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus G186AR]
Length = 1388
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 117/283 (41%), Gaps = 52/283 (18%)
Query: 500 IQIRPSMIKVKA-----DRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEI 554
+QI S +K+ + + D Q + EVV+ S L+ L+ +L +GG+
Sbjct: 752 LQITQSQLKIHPAPPHDTKPMDDTQL--TFEVVQWSRPLSPASLNMQLLNILQHGGIRND 809
Query: 555 FFLDILRNALDDARGVF-------------------------SNKRNALKVSFNYGGMDY 589
++++ + F S+KR K + N+ Y
Sbjct: 810 HIRNLIKQEMSSFYDEFLRTLLCSSGVECRSWLQKMKWITNGSSKRQP-KRTDNFFPSQY 868
Query: 590 DFTSARMILSG-ISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKS 648
+ ++ +G + L PYL L+++ +L+ K+ V++S + DP G+L+
Sbjct: 869 AEQAIMLLDAGFLPLKLPYLTKIFRRLLQDYLDNLKKLKITVSQSTFAYCVADPFGVLRP 928
Query: 649 NEVCIILKDGQVSWEK-----------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSK 697
+EV + WE VL+ R P DI ++ Y EL K
Sbjct: 929 DEVHLGFSR---EWEHGSAGTELHDIDVLLARLPAHLATDIQKRRSVYKNELRHM----K 981
Query: 698 YAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESE 740
I FP G LA ++GGD+DGD +V +P +++ FK +E
Sbjct: 982 DVIVFPTTGDTPLASLLSGGDYDGDQCWVCWDPIIVREFKSTE 1024
>gi|452985629|gb|EME85385.1| hypothetical protein MYCFIDRAFT_83458, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 1527
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 124/289 (42%), Gaps = 55/289 (19%)
Query: 494 KLPPQTIQIRPSMIKVKAD--RDL-SDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGG 550
K P I+I S IKVK RDL S G T N VVK ++ R++ L +++L G
Sbjct: 884 KPPGPLIRISSSQIKVKHGSLRDLDSHGLTLN---VVKANSDVRQSILHIGFLSILVDRG 940
Query: 551 VPEIFFLDILR----NALDDARGVFS-----------NKRNALKVSFNYGG--------- 586
VP+ ++++R N +D ++R+ L N G
Sbjct: 941 VPKQDLIELVREQIHNDMDKLETALKSPSPMPLRHWMHRRHELWEERNRTGDISKVAGFP 1000
Query: 587 MDYDFTSARMILSG-ISLDEPYLQHRLSILMKE----EKKSLQAGKLPVTESYYLMGTV- 640
+ + +M+ SG + E +L + ++K +KK+ K+P++ S L+G
Sbjct: 1001 VSREERIVQMLESGLVPSQEAFLASEVRTMVKTVLDTKKKNF---KIPLSRSTTLLGVAL 1057
Query: 641 -DPTGILKSNEVCIIL------KDGQVSWE-----KVLVYRNPGLHFGDIHVLKATYVKE 688
DP L E+ + K + W + L+ RNP + D+ +KA + E
Sbjct: 1058 ADPLNCLAPGEIHVNFARTFCDKITGMPWSILHEMECLIARNPAMAPWDMQKVKAVFKPE 1117
Query: 689 LEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFK 737
L + G R LA+ + GGD+DGD +++ P L++ F+
Sbjct: 1118 LAHLPNV----VILSAKGKRPLAELLQGGDYDGDTFWLCWEPRLVRPFR 1162
>gi|353236430|emb|CCA68425.1| related to NAM7-nonsense-mediated mRNA decay protein (RdRP)
[Piriformospora indica DSM 11827]
Length = 678
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 143/338 (42%), Gaps = 49/338 (14%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQT---IQIRPSMIKVKADRDLSDGQTFNSLEVV 527
P + Q+R Y G KG L+L+ L Q + R SM K G ++L ++
Sbjct: 218 PSVFQIR--YKG--YKGVLMLHPPLDSQNDGYVHFRKSMRKFT-------GVPNDTLSII 266
Query: 528 KTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGM 587
K S L+ ++ALLS G+ + L LR + R V +N +AL +
Sbjct: 267 KYSVPYTYGRLNNEIVALLSSLGISDEVLLGKLRAYMSWLRTVCTNLSSALDF---VSSI 323
Query: 588 DYDFTSARMILSGISLDEPYLQHRLSILMKEE-----KKSLQAGKLPV--TESYYLMGTV 640
D R++L GI D +Q L +K+E K ++ KL V S L G
Sbjct: 324 DKHSLVERILLEGI--DSAGIQRELKKALKQEIEKFKKVDIEKKKLRVLVNNSRRLFGVC 381
Query: 641 DPTGILKSNEVCIILKDGQVSWE-----KVLVYRNPGLHFGDIHVLKATYVKELEDFVGT 695
DP IL+ EV + + VL++RNP +H GD L+A EL V
Sbjct: 382 DPFQILREGEVFVRVTMPHAGPRTIHSCSVLIFRNPCMHPGDCLKLRAVDKPELRHLVD- 440
Query: 696 SKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL-----KHF-----KESERWMST 745
+ F G + +GGD D Y + + +L+ +H+ KE ++ + T
Sbjct: 441 ---CVVFASKGRHAAPSLSSGGDLDE--YTIIWDKDLIPSRVFEHYLYPPVKEKKKSVIT 495
Query: 746 SKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKS 783
++L+A+ +++ + + + RF P AKS
Sbjct: 496 RRDLAAH--FANYNSISMGTTARLYWQWVRFHPEGAKS 531
>gi|336364173|gb|EGN92535.1| hypothetical protein SERLA73DRAFT_99065 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1660
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 113/277 (40%), Gaps = 32/277 (11%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQT---IQIRPSMIKVKADRDLSDGQTFNSLEVV 527
P + Q+R Y G KG L+L+ KL + ++ R SM K D S VV
Sbjct: 218 PTVFQIR--YLG--YKGVLMLDPKLDEEKKFLVKFRKSMKKFSTTED-------KSFSVV 266
Query: 528 KTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGM 587
S L+ +++ LLS G+ + F R + G + A+ + G
Sbjct: 267 GYSQPYSFGRLNNDIVVLLSSLGISDEKFQAKQRAYFEWIEGASHDAVKAIDFLSSLGKY 326
Query: 588 DYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVT-----ESYYLMGTVDP 642
+ R++L G +D P + + L E P T +S L G DP
Sbjct: 327 SL---AERLLLDG--MDSPAVSKEIRALQNAEVAQFLKNNRPRTRMIIHKSRLLYGVCDP 381
Query: 643 TGILKSNEVCIILKDGQVSWEK-----VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSK 697
G+LK +V I + + +LV RNP LH GD L+A L +
Sbjct: 382 YGVLKEGQVQIRITSSRGGATTPINGDILVVRNPCLHPGDCLKLRAVDHPSLSHLLDCIV 441
Query: 698 YA-IFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
+A + P + P +GGD DGD +FV +P+L+
Sbjct: 442 FATVGRPGHQPAPAMS--SGGDLDGDKFFVCWDPDLV 476
>gi|367049126|ref|XP_003654942.1| hypothetical protein THITE_2079458 [Thielavia terrestris NRRL 8126]
gi|347002206|gb|AEO68606.1| hypothetical protein THITE_2079458 [Thielavia terrestris NRRL 8126]
Length = 1373
Score = 62.8 bits (151), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 28/173 (16%)
Query: 596 MILSGISLDEPYLQHRLSILMKEEKKSLQAG-KLPVTESYYLMGTVDPTGILKSNEVCI- 653
++ SG + Y+Q L K+ + L+ + V S Y+ VD G+L+ NEV +
Sbjct: 837 LLNSGFDRRQKYIQDLAFDLQKQRCEVLRTKLNIHVGRSAYMFMVVDFWGVLEENEVHVG 896
Query: 654 ---------------ILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKY 698
+L D V LV R+P DI ++A + +L K
Sbjct: 897 FSSKFRDDVDDTTYMLLTDCDV-----LVARSPAHFPSDIQKVRAVFKPQLHAL----KD 947
Query: 699 AIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSA 751
I FP G LAD+++GGD+DGDM +V +P+++++F ++ M +LSA
Sbjct: 948 VIVFPAKGDIPLADKLSGGDYDGDMAWVCWDPDIVENFTNAD--MPKEPDLSA 998
>gi|142942403|gb|ABO92978.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 935
Score = 62.8 bits (151), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 128/561 (22%), Positives = 211/561 (37%), Gaps = 121/561 (21%)
Query: 209 QEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGD-DNILLVKF-DE 266
Q + S+ D G ++ + T F GP +N + L+ D DN L V F DE
Sbjct: 341 QPPKSPSITLDDGLVYVRRVLV-TPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDE 399
Query: 267 E--------LGGHRSSNNW--NDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDP 316
E L S+ N + Y + R+G ++G + + F F
Sbjct: 400 EWEKLYSTELLPKASTGNGIRTNIYERILSTLRKGFVIGDKKFEFLAF------------ 447
Query: 317 STSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSK 376
S+S ++ V M +S G T ++ R + +VA Y +R
Sbjct: 448 SSSQLRDNSVWMFASR----------RGLTANDIRSWMGDFSQIKNVAKYAARFGQSFGS 497
Query: 377 TMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKE 436
+ + + R IE I D V G + + +DG G IS D A K
Sbjct: 498 SRE-TLSVLRHEIEVIPD----------VKVHGTSYVFSDGIGKISADFARKV------- 539
Query: 437 KCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLP 496
A+ + T S + Q+R Y G KG + ++
Sbjct: 540 ------------------ASNCGLQYTPSAF-------QIR--YGG--YKGVVAVDP-YS 569
Query: 497 PQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSN-QPRKTYLSRNLIALLSYGGVPEIF 555
+ +R SM K ++D N L+V++ S QP YL+R L+ LLS GV +
Sbjct: 570 SMKLSLRKSMSKYESDN--------NKLDVLEWSKYQP--CYLNRQLVTLLSTLGVKDDV 619
Query: 556 FLDILRNALDDARGVFSNKRNALK-VSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSI 614
+ A+D + + A + + G + + A + + EP+L L
Sbjct: 620 LEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQT 679
Query: 615 LMKEEKKSLQA-GKLPVTESYYLMGTVDPTGILKSNEVCIILKD-GQVSWEK-------- 664
+ L+ ++ + +MG +D + L+ +V + G + +
Sbjct: 680 FRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNS 739
Query: 665 ------------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLAD 712
V+V +NP LH GDI VL+A V L V + FP G R +
Sbjct: 740 RSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVD----CVVFPQKGKRPHPN 795
Query: 713 EIAGGDFDGDMYFVSRNPELL 733
E +G D DGD+YFV + +++
Sbjct: 796 ECSGSDLDGDIYFVCWDQDMI 816
>gi|400596583|gb|EJP64354.1| RNA dependent RNA polymerase [Beauveria bassiana ARSEF 2860]
Length = 527
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 112/271 (41%), Gaps = 54/271 (19%)
Query: 627 KLPVTESYYLMGTVDPTGILKSNEVCIILKDG-----------QVSWEK----------- 664
++ + +S ++MG VD TG L+ + + G Q+S K
Sbjct: 6 RIQIEKSAFVMGCVDETGTLRGHSIQTEGSRGKNKAVLPQIFLQMSDRKYGNKTTIIQGV 65
Query: 665 VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMY 724
+ RNP LH GDI V++A L K + FP G RSL ++GGD DGD Y
Sbjct: 66 CFIGRNPSLHAGDIRVVEAVDTPCLRHL----KDVVVFPSKGDRSLPSILSGGDLDGDEY 121
Query: 725 FVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSL 784
FV + L+ S ST +R ++ +++L + K N
Sbjct: 122 FVIWDSTLVPKIWNSPPMHSTPVTPQDLERGVE--VDDLRNFAVKYMKN----------- 168
Query: 785 AADCWQAVMDRFLTLGDESAEEKAAMKEN---MLRLINIYYDALDAPKKSGIKVEVPED- 840
DC V L D A+ N L+L ++ A+D K+G+ E
Sbjct: 169 --DCLGFVAVAHLAHAD-------ALGLNHPICLQLAKLHSQAVDY-LKTGVPAEWNRAR 218
Query: 841 LKVEKFPCYMRRDESVSFESTSVLGTIYNTV 871
+ K+P +M+R+ S ++ S LG +YN V
Sbjct: 219 YQPSKWPHFMQRN-SCTYPSHKALGKLYNRV 248
>gi|403358455|gb|EJY78878.1| RNA-directed RNA polymerase [Oxytricha trifallax]
Length = 1079
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 130/548 (23%), Positives = 212/548 (38%), Gaps = 128/548 (23%)
Query: 235 NCTFKGPYLNQTRTHLQRELGD-DNILLVKFDEELGGHRSSNNWNDSYSKYN---EIARE 290
N + + YL Q+ ++R + D L +KF LGG++ ND Y + +I R
Sbjct: 248 NTSERQLYLEQSNQVIRRHFTNVDKFLKIKF---LGGNQELELLNDQYMRIKGDYQIRRN 304
Query: 291 ------------GILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRME-------SS 331
GI + + + F G + KD S +F+R +S
Sbjct: 305 LVTNLLWNILGYGISINNKTFKFL----GYSNSQLKDRS-----FWFLRQAVENDLKLNS 355
Query: 332 AFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIER 391
A + M Y + +++ Y+ + VAN + I+ KLE R I+
Sbjct: 356 AIMSM-YGIVAIPSNLNKKEYLGEVLNCHGKVANNYTSSDFII----KLE----RNQIQV 406
Query: 392 IEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRK 451
I D D Y+D TDG G IS+ L+
Sbjct: 407 INDIVRHD------YQDNRDFNFTDGNGLISQKLS------------------------- 435
Query: 452 ELEANFSDVARTESHYG-EPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVK 510
HYG + + QVR+ G A KGTL ++++L + + +R SMIK+K
Sbjct: 436 ---------NMINQHYGLKNCSVYQVRI---GGA-KGTLTVDQRLKGKKVILRSSMIKLK 482
Query: 511 ADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGV 570
+ L +V+ + Y +R +IAL + GV + F ++++ +
Sbjct: 483 NN--------ITDLNIVQCG-KAGLGYSNRQVIALFEHDGVHKEEFFELIKKNIQYQFFK 533
Query: 571 FSNKRNALKVSFN------------YGGMDYDFTSARMILSGISLDEPYLQHRLSILMKE 618
++ A VS+ G Y IL +P Q ++ L +E
Sbjct: 534 QLSQGQAQSVSYYDLAFLEQHLTHLVGAFKYFIRKKPEILRY----DPLFQSIVNQLKQE 589
Query: 619 EKKSL-QAGKLPVTESYYLMGTVDPTGILKSNEVCII------LKDG---QVSWEKVLVY 668
+ + + G++ + S L+G D GIL+ NE+ + L+ G QV V+V
Sbjct: 590 IMRQITEKGRIYMKNSVVLLGVPDFLGILQENEIFLQIPKYNDLEQGEQYQVIRGDVVVT 649
Query: 669 RNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSR 728
RNP LH DI L A E + A+ F G + +AGGD DGD Y +
Sbjct: 650 RNPALHPNDIRKLVAVDRPEFRYL----RNAVVFSTQGSIPPSTMMAGGDHDGDRYLIIW 705
Query: 729 NPELLKHF 736
++ +F
Sbjct: 706 ERSIVNNF 713
>gi|392890785|ref|NP_495713.2| Protein RRF-3 [Caenorhabditis elegans]
gi|316979926|emb|CAA88315.2| Protein RRF-3 [Caenorhabditis elegans]
Length = 1765
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 70/157 (44%), Gaps = 27/157 (17%)
Query: 628 LPVTESYYLMGTVDPTGILKSNEVCI-------------ILKDGQVSWEKVLVYRNPGLH 674
LP + + G VD TG+L+ +V I ILK G KVL+ +NP
Sbjct: 1040 LPPSLGRSMYGVVDETGLLQYGQVFIQYSPSIRQTSNRPILKTG-----KVLITKNPCHV 1094
Query: 675 FGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLK 734
GD+ V A + L V + FP +GPR DE+AG D DGD Y + + E+L
Sbjct: 1095 PGDVRVFDAVWQPALAHLVDV----VVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQEMLL 1150
Query: 735 HFKESERWMSTSKNLSANKR-----LIDFSLEELESE 766
+ E +S +K +++F L L+ +
Sbjct: 1151 DYNEEAMVFPSSSAAEEDKEPTTDDMVEFFLRYLQQD 1187
>gi|341891711|gb|EGT47646.1| CBN-EGO-1 protein [Caenorhabditis brenneri]
Length = 1632
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 112/261 (42%), Gaps = 45/261 (17%)
Query: 502 IRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILR 561
RPS IK + R D +E+VK S+ P L++ I +L V E+ L+ R
Sbjct: 745 FRPSQIKFISKRHPRD-----QVEIVKYSS-PVPVSLNKPFINILD--QVSEMQSLECHR 796
Query: 562 NA-------LDDARGVFSNK-------RNALKVSFNYGGMDYDFTSARMILSGISLDEPY 607
LD +F+ + RN LK +DY T+ LS EP+
Sbjct: 797 RVTNRIEELLDRQMLLFAQQMVDETFCRNRLKELPRRVDIDYLRTTWGFTLSS----EPF 852
Query: 608 LQHRLSILMK-EEKKSLQAGKLPVTESY--YLMGTVDPTGILKSNEVCIILKDG------ 658
+ + +K K L+ ++P+ + ++G VD TG L+ ++ +
Sbjct: 853 FRSLIKASIKFSITKQLRKEQIPIPQDLGRSMLGVVDETGRLQYGQIFVQYTKNLALKLP 912
Query: 659 ------QVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLAD 712
QV VL+ +NP + GD+ + +A + EL + FP +GPR D
Sbjct: 913 PKNAARQVLTGTVLLTKNPCIVAGDVRIFEAVDIPELHHMCD----VVVFPQHGPRPHPD 968
Query: 713 EIAGGDFDGDMYFVSRNPELL 733
E+AG D DGD Y + + +LL
Sbjct: 969 EMAGSDLDGDEYSIIWDQQLL 989
>gi|341880675|gb|EGT36610.1| hypothetical protein CAEBREN_29614 [Caenorhabditis brenneri]
Length = 1669
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 112/261 (42%), Gaps = 45/261 (17%)
Query: 502 IRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILR 561
RPS IK + R D +E+VK S+ P L++ I +L V E+ L+ R
Sbjct: 761 FRPSQIKFISKRHPRD-----QVEIVKYSS-PVPVSLNKPFINILD--QVSEMQSLECHR 812
Query: 562 NA-------LDDARGVFSNK-------RNALKVSFNYGGMDYDFTSARMILSGISLDEPY 607
LD +F+ + RN LK +DY T+ LS EP+
Sbjct: 813 RVTNRIEELLDRQMLLFAQQMVDETFCRNRLKELPRRVDIDYLRTTWGFTLSS----EPF 868
Query: 608 LQHRLSILMK-EEKKSLQAGKLPVTESY--YLMGTVDPTGILKSNEVCIILKDG------ 658
+ + +K K L+ ++P+ + ++G VD TG L+ ++ +
Sbjct: 869 FRSLIKASIKFSITKQLRKEQIPIPQDLGRSMLGVVDETGRLQYGQIFVQYTKNLALKLP 928
Query: 659 ------QVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLAD 712
QV VL+ +NP + GD+ + +A + EL + FP +GPR D
Sbjct: 929 PKNAARQVLTGTVLLTKNPCIVAGDVRIFEAVDIPELHHMCD----VVVFPQHGPRPHPD 984
Query: 713 EIAGGDFDGDMYFVSRNPELL 733
E+AG D DGD Y + + +LL
Sbjct: 985 EMAGSDLDGDEYSIIWDQQLL 1005
>gi|367029127|ref|XP_003663847.1| hypothetical protein MYCTH_2306054 [Myceliophthora thermophila ATCC
42464]
gi|347011117|gb|AEO58602.1| hypothetical protein MYCTH_2306054 [Myceliophthora thermophila ATCC
42464]
Length = 1364
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 78/305 (25%), Positives = 128/305 (41%), Gaps = 50/305 (16%)
Query: 500 IQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDI 559
I+ PS K D +D +LEV K +++ + L+ + +L V +
Sbjct: 720 IETYPSQRKWNCDD--ADEPFHRTLEVRKVASELKPASLNLQFLPVLEDRAVDKKAMRCA 777
Query: 560 LRN-ALDDARGVFSNKRNALKVSFNY------------------------GGMDYDFTSA 594
+ N L+D F +++ ALK + GG+ D
Sbjct: 778 ISNRLLNDLAKQFEDQKTALKRPLQFRQWVHENSNNNRPERVKHGQVPFLGGLPADKNEI 837
Query: 595 RMILSGISLD---EPYLQHRLSILMKEEKKSLQAG-KLPVTESYYLMGTVDPTGILKSNE 650
+L D + YL+ L K++ +L+ + V S Y+ VD G+L+ NE
Sbjct: 838 LALLMNSGFDPKSQRYLRDLAWELQKQKCDTLRTKLNIKVGRSAYIYMVVDFWGVLEENE 897
Query: 651 VCIILK-------DGQVSWE-----KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKY 698
V + DG VS+ VLV R+P DI ++A + EL K
Sbjct: 898 VHVGFSSKFRDELDG-VSYTLLADCDVLVARSPAHFVSDIQKVRAVFKPELHAL----KD 952
Query: 699 AIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDF 758
I F G LAD+++GGD+DGD +V +PE++ +F+ +E + +LSA R
Sbjct: 953 VIVFSTKGDIPLADKLSGGDYDGDFAWVCWDPEIVDNFENAE--VPVEPDLSAYLRKDKT 1010
Query: 759 SLEEL 763
+ +EL
Sbjct: 1011 TFDEL 1015
>gi|449547217|gb|EMD38185.1| hypothetical protein CERSUDRAFT_113336 [Ceriporiopsis subvermispora
B]
Length = 1207
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 155/721 (21%), Positives = 283/721 (39%), Gaps = 151/721 (20%)
Query: 216 LKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELG-DDNILLVKF-DEELGGHRS 273
L+ G YH T +GPY+ Q+ ++R +G D + V F DE+ +R
Sbjct: 398 LQISGGNFTCYHVTF-TPTKMVLEGPYVIQSNRVIRRYVGFQDRFIRVDFRDEDRLQYRW 456
Query: 274 SNNWNDS---YSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMES 330
+ + S + + I R+G + R + F + STS ++ + V +
Sbjct: 457 AKEVDGSSLLHDRVGGILRKGFDLAGRRFEFLAY------------STSALREHAVWFMN 504
Query: 331 SAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIE 390
+ + +++ + + E+ F + + + Y +R++ + T V +R E
Sbjct: 505 P--FEHPREGLVTAQGIRESLGDFSGSKVIKQPSKYAARMAQAFTAT-DPSVSITRDQWE 561
Query: 391 RIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDR 450
+ D + ++TDG G IS +L ++ C +R
Sbjct: 562 TVPD------------LGEDPYLYTDGVGTISAELG----DMIWDALCAASPDGKRR--- 602
Query: 451 KELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVK 510
G P Q+R KG + ++++L +++RPSM K K
Sbjct: 603 -----------------GVKPSAYQIRFL----GFKGVVAVDERLQGIKMRLRPSMDKFK 641
Query: 511 ADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDI-------LRNA 563
A +D + +E+ + + P YL+R L+ +L GV + F+ + + A
Sbjct: 642 AR---ADEEAEAKIEIARAFDYPGTCYLNRPLVTVLEDRGVDKSAFMRLQERIKAEIYTA 698
Query: 564 LDD-ARGVFSNKRNALKVSFNYG---------GMDYDFTSARMILSGISLDEPYLQHRLS 613
D A+ + K N++ + G GM + +L+ +D LQ+ +
Sbjct: 699 SDSLAQAISVLKANSIGNGYKLGFILQGLKNIGMGLPYEKNVQVLNDSFIDR-LLQYAKN 757
Query: 614 ILMKEEKKSLQAGKLPVTESYYLMGTVD--PTGILKSNEVCIILKDGQVSW--------- 662
+++ K ++P+ ESY L+G D P + E IL +G +
Sbjct: 758 YVLRNIKHD---ARIPIPESYLLVGIADEGPAYEAEGCENVYILPEGHIYACVQHPDDPE 814
Query: 663 -----EKVLVYRNPGLHFGDIHVLKATYVKELED---FVGTSKYAIFFPCNG------PR 708
++V R+P +H GD+ + A K E F K + P G PR
Sbjct: 815 PIYLEGNIMVTRSPTVHPGDVQQVTAI-GKPPEGKICFFRNLKNVVVLPSTGNCGGDCPR 873
Query: 709 SLADEIAGGDFDGDMYFVSRNPEL------LKHFKESERWMSTSKNLSANKRLIDFSLEE 762
SLA + GGD DGD+Y V + L L ES + ++ + + +IDF +E
Sbjct: 874 SLASCLGGGDLDGDLYQVVKYAPLVPLESQLAGSYESAGTHTLDRDSTVDD-IIDFIVEY 932
Query: 763 LESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYY 822
++S++ L + DR L + D+S + + L L +
Sbjct: 933 IDSDVLGL---------------------LSDRHLMIADQS--KYGVNDPSCLELARLCS 969
Query: 823 DALDAPKKSGIKV---EVPEDLKVEKFPCYMRRDESVS-----FESTSVLGTIYNTVKSY 874
A+D P K+GI V + P L K P + + +++ S +ES LG ++ +
Sbjct: 970 QAVDYP-KNGIPVDKGDAPRTLLPYK-PNWKQAEDNDSRPTDYYESNRALGELFRNISIT 1027
Query: 875 E 875
E
Sbjct: 1028 E 1028
>gi|212534570|ref|XP_002147441.1| RNA-directed RNA polymerase, putative [Talaromyces marneffei ATCC
18224]
gi|210069840|gb|EEA23930.1| RNA-directed RNA polymerase, putative [Talaromyces marneffei ATCC
18224]
Length = 1361
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 110/276 (39%), Gaps = 43/276 (15%)
Query: 500 IQIRPSMIKVKADRDLSDGQTFN---SLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFF 556
IQI S +KVK G + EV S R + L+ L+ +L+ G
Sbjct: 725 IQISDSQLKVKPHPCDFFGHVDEEKITFEVASWSKPLRSSELNTQLLEVLNNRGQVRKRV 784
Query: 557 LDILRNALDDARGVFSN--KRNALKVS-----------------FNYGGMDYDFTSA--- 594
DI R A+ D F N +RN++ ++ N +D +
Sbjct: 785 ADIAREAIRDIYKEFENVMERNSIPLARALIQKIRPTADDGYSRTNIRRIDQWLSQTIES 844
Query: 595 --RMILSGIS-LDEPYLQHRLSILMKEE-KKSLQAGKLPVTESYYLMGTVDPTGILKSNE 650
R + +G S D P L+ R+ I + + + + +P+ S Y DP G+L+ NE
Sbjct: 845 VIRFLEAGFSPRDFPPLRERMRICLNDTLNRYVNELHIPIPLSTYAYCIADPYGVLEENE 904
Query: 651 V----------CIILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAI 700
V C D V VLV R P DI +A + EL F K I
Sbjct: 905 VHFAFSGQWRDCSYFDDAMVDGADVLVGRTPAHCPWDIQRRRAVWKSELRHF----KDVI 960
Query: 701 FFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHF 736
F G LA ++GGD+DGD ++ + +++ F
Sbjct: 961 VFSTRGTTPLASLLSGGDYDGDRPWICWDQGIVETF 996
>gi|429863502|gb|ELA37949.1| RNA-dependent RNA polymerase, partial [Colletotrichum
gloeosporioides Nara gc5]
Length = 989
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 15/149 (10%)
Query: 630 VTESYYLMGTVDPTGILKSNEVCIILK---------DGQVSWEKVLVYRNPGLHFGDIHV 680
+ S YL VD GIL+ NEV + D + VLV R+P DI
Sbjct: 793 IPNSAYLYMVVDFWGILEENEVHVCFSSTFRTEGFSDSMLHGCDVLVARSPAHLVSDIQR 852
Query: 681 LKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESE 740
+KA + EL K I FP G +LAD+++GGD+DG +V P ++ +F+ +
Sbjct: 853 VKAVFKPELRAL----KNVIVFPAKGDVALADKLSGGDYDGGRAWVCWEPAIVSNFENAN 908
Query: 741 RWMSTSKNLSANKRLIDFSLEELESELFK 769
+ T +LS R + S +L ++ K
Sbjct: 909 --VPTRPDLSGFLRKDEASFGDLTRQVGK 935
>gi|452845289|gb|EME47222.1| hypothetical protein DOTSEDRAFT_69242 [Dothistroma septosporum
NZE10]
Length = 816
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 78/313 (24%), Positives = 128/313 (40%), Gaps = 52/313 (16%)
Query: 469 EPPLLMQVRLF-----YNGTAVKGTLLLNKKLPPQTIQIRPSMIKVK--ADRDLSDGQTF 521
E P ++Q R+F + +A + T +K P + I+I S IKV+ G+
Sbjct: 160 EVPSVIQGRIFGAKGIWYVSADQDTARSTEKPPGKNIKIANSQIKVRYPLHEVRHFGKEL 219
Query: 522 NSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFF-----------LDILRNALDDARGV 570
++ VVK S + + L + LL VPE+ ++ L +L+ +
Sbjct: 220 LTMNVVKASGPCKPSILHIGFMPLLEDRKVPELAIRGFIGPRVQAEMNDLLTSLETPVQL 279
Query: 571 ------------FSNKRNALKVSFNYGGMDYDFTSA--RMILSGISLDEPYLQHRLSILM 616
N+ N + + GG + +M+ SG E L + M
Sbjct: 280 REWMAQQNEYYEICNRENGITTA---GGFPWSKGEQIIQMLESGFFPQEDAYLAELVVEM 336
Query: 617 KEEKKSLQAG--KLPVTESYYLMGTVDPTGILKSNEVCI----ILKDGQV--SWE----- 663
+L+ K+ V S ++G DP G L+ E+ I +D + SW
Sbjct: 337 VGNYLTLKRKNFKIHVPRSTTVIGISDPLGCLQPGEIHIGFSTPFRDHKAGASWMHLHGM 396
Query: 664 KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDM 723
VL RNP + D+ L+A Y EL + + FP G R LA ++ GGD+DGD
Sbjct: 397 NVLSTRNPSMAGSDMQKLRAVYKPELAHL----RDVVVFPSQGMRPLAGKLQGGDYDGDT 452
Query: 724 YFVSRNPELLKHF 736
+++ P L+ F
Sbjct: 453 FWLCWEPSLVDPF 465
>gi|183233879|ref|XP_651309.2| RNA-directed RNA polymerase [Entamoeba histolytica HM-1:IMSS]
gi|169801365|gb|EAL45936.2| RNA-directed RNA polymerase, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449710750|gb|EMD49768.1| RNA-dependent RNA polymerase, putative [Entamoeba histolytica KU27]
Length = 1026
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 120/280 (42%), Gaps = 32/280 (11%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P Q+R VKG L +++ + I RPS IK++A +T L V++
Sbjct: 456 PYAFQIRF----AGVKGVLTVDRLDMTENIYFRPSQIKIEAL-----PKTIQKLRVIQIP 506
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYD 590
Q R ++ L L Y +P F+ + L V N R + + +
Sbjct: 507 -QFRSGRMNEQLALGLEYLQIPPSNFISSAKQYLKKYFSVTPN-REIISLFQRFTNNPVI 564
Query: 591 FTSARMILSGIS----LDEPYLQH-----RLSILMKEEKKSLQAGKLPVTESYYLMGTVD 641
+ ++I++ +EP+++ R+S+L EK K + S +LMG +D
Sbjct: 565 EVALKIIMASNGNQKIYEEPFIRATSLVLRMSLL--SEKTDFI--KFDIDNSAFLMGVMD 620
Query: 642 PTGILKSNEVCIILKDGQVSW--EKVLVYRNPGLHFGDIHVLKATYVK-ELEDFVGTSKY 698
+G+L+ EV I + V+ ++LV + P H GD +L K LE G +
Sbjct: 621 ESGLLEEGEVFIQVTTSTVTIPSSRLLVVKFPATHPGDFVLLNNVVDKINLEKKKGFERL 680
Query: 699 -----AIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
I F G R ++++GGD DGD Y + NP L
Sbjct: 681 TYLRDVIVFSSKGNRPDPNKLSGGDLDGDEYLIIWNPLFL 720
>gi|389740949|gb|EIM82139.1| hypothetical protein STEHIDRAFT_161484 [Stereum hirsutum FP-91666
SS1]
Length = 1302
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 119/541 (21%), Positives = 213/541 (39%), Gaps = 119/541 (21%)
Query: 362 SVANYMSRLSLILSKTM---KLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGT 418
++A + +R+ L LS ++ KLE + R+ E I + ++ K + TDG
Sbjct: 455 TIAKWAARIPLGLSNSVPGPKLECNQIRLEPEIISS----SWNPSMGPKPPSEMEMTDGC 510
Query: 419 GFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRL 478
GFI++ AL+ EL +N + P+ +QVR+
Sbjct: 511 GFINQ-TALQ-----------------------ELHSN--------KFWDSIPVAIQVRV 538
Query: 479 FYNGTAVKGTLLLNK-------KLPPQTIQIRPSMIKVK-ADRDLSDGQTFNSLEVVKTS 530
N KG L + K P I +RPS K+ +D+DL+ +++V++ S
Sbjct: 539 AGN----KGLLTRHPSNDANYLKYP--CIWVRPSQTKIHYSDQDLAHEPAKRTIDVLRAS 592
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNAL---KVSFNYGGM 587
+ S+ ++ + GVP +R +L++ + L ++ F GG+
Sbjct: 593 HMRSGIQASKEVLVNFAENGVPHEILSRRMRESLEELMEQLLQWDDMLQLYRLVFKEGGI 652
Query: 588 DYDFTSARMILSGIS-------------------------------LDEPYLQHRLSILM 616
ARM LD + +IL
Sbjct: 653 ----LGARMAREAAGEARVRGYRAYDNEDDDKEEDERISEETVCYFLDSGFTPQNNAILA 708
Query: 617 KEEKKSLQAG----------KLPVTESYYLMGTVDPTGILKSNEVCIIL-------KDGQ 659
++ K+ + ++P++ S +++ DPTG LK E+ I +DGQ
Sbjct: 709 EKLKEVITKAMKKRIARCKVEIPMSCSAWIIP--DPTGTLKEGEIHIRSSAPNLKGQDGQ 766
Query: 660 VSWE---KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAG 716
++ + VLV R+P D+ + A Y +LE +V I F G RSLA +
Sbjct: 767 LTEQVLGPVLVSRHPCKLPTDVQKVTAVYYSQLEKYVDV----IVFSTKGCRSLASMLGT 822
Query: 717 GDFDGDMYFVSRNPELLKHFKESE-RWMSTSKNLSANKRLIDFSLEELESELFKLFLNTR 775
GD+DGD +PE+ F+ ++ ++ +L N + + ++ E K+ R
Sbjct: 823 GDYDGDKVEAVWDPEIAGPFRNADPKFADPPPDLMKNFKKQNETVAEFLKRTEKMSPEQR 882
Query: 776 FCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKV 835
A L A V+ + + D S + + RL N++ + LD K+G+ V
Sbjct: 883 MEALQAVLLGALRDPNVVGIYSCMHDNSIYVRGYAHPDTRRLGNMFAEILDG-GKTGLTV 941
Query: 836 E 836
+
Sbjct: 942 D 942
>gi|449541618|gb|EMD32601.1| hypothetical protein CERSUDRAFT_126709 [Ceriporiopsis subvermispora
B]
Length = 1473
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 116/505 (22%), Positives = 185/505 (36%), Gaps = 140/505 (27%)
Query: 323 CYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTV------------SSVANYMSRL 370
+F R F+++ Q SG+ + F V V + + +++R
Sbjct: 680 AFFAREAKVFFVEIA-QLSSSGQRLQSGHGKFNSVMGVVQWHNPLDLNGRQATSKWITRF 738
Query: 371 SLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCP 430
L S T+ + + FS NI IED+ C ++ E ++ TDG GFI+
Sbjct: 739 DLGFSTTVPV-IQFSPDNIFYIEDQ-CAPYPAHLKKAPTEKIL-TDGCGFINAAALKMIA 795
Query: 431 TYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLL 490
Y+ +E +Q R+ KG L
Sbjct: 796 VYLNREGRIT--------------------------------AVQGRI----AGAKGVWL 819
Query: 491 LNKK-----LPPQTIQIRPSMIKVK-ADRDLSDGQTFNSLEVVKTSNQPRKTYLSR--NL 542
L+ + PP+ I IR S K++ A+ L+ Q ++V T PR T+ SR L
Sbjct: 820 LHPEDRALDAPPR-IWIRDSQRKIRHAEGGLTRSQLI--FDLVAT---PRLTFPSRLSKL 873
Query: 543 IAL-LSYGGVPEIFFLDILR-----------------------NALDDARGVFSNKRNAL 578
L L++ VP+ F+ +LR +A+D A V + + +
Sbjct: 874 TVLNLAHNQVPKDVFVKLLREGLEAEIAPLVNWSGPEAMRLLYDAVDQAGNVTAGRVRKI 933
Query: 579 KVSFNY-----GGMDYDFTSAR---------MILSGISLDEPYLQHRLSI-LMKEEKKSL 623
V G + D A ++L G EP+ H I L++
Sbjct: 934 AVGLTRALGLSGRFEQDAAEANDALENADTNIVLEGSDNIEPFTIHESVIELLRAGFSPA 993
Query: 624 QAG---------------------KLPVTESYYLMGTVDPTGILKSNEVCI----ILKDG 658
Q+ +LPV +S DP G+L+ ++ +LKD
Sbjct: 994 QSQYLYDKLKMIVKLVVDRFVRDYRLPVAQSAEAFIVPDPYGVLEPGQIHFRATQLLKDS 1053
Query: 659 QVSWEK------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLAD 712
E VLVYRNP D+ + A +L ++ I P G RSLA
Sbjct: 1054 ITDPEPDTLLGDVLVYRNPCRVASDVQKVTAVSHPKLTEYTDV----IVLPTKGDRSLAS 1109
Query: 713 EIAGGDFDGDMYFVSRNPELLKHFK 737
+AGGD DGD+ +PE++ F+
Sbjct: 1110 LLAGGDVDGDVCVCIWDPEIVSQFQ 1134
>gi|451845380|gb|EMD58693.1| hypothetical protein COCSADRAFT_194603 [Cochliobolus sativus
ND90Pr]
Length = 1215
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 111/276 (40%), Gaps = 52/276 (18%)
Query: 500 IQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPE------ 553
I+I S K + D S + EV S+ P + L + I +L+ GV +
Sbjct: 596 IEINESQWKFQPPNDQSPYH--RTFEVSNYSSTPSPSELHSSFIPILADRGVTKEAISDL 653
Query: 554 ---------IFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFT----SARMILSG 600
I L++L++A V+ N N +G + + + ++ SG
Sbjct: 654 MLDSLEKERINLLNVLQDATKVHEWVYRNGANTKLREETHGRVGQPASLKEKALNLLESG 713
Query: 601 IS-LDEPYLQHRL-SILMKEEKKSLQAGKLPV--TESYYLMGTVDPTGILKSNEVCIILK 656
L PYL L S +M ++ Q KL V +S +L G DP G+L E+ I+
Sbjct: 714 FDPLKFPYLAQNLESFIM--SRQIFQEAKLRVLLPKSTFLYGVADPLGVLNPGEIQILF- 770
Query: 657 DGQVSWE----------------KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAI 700
SW +VLV R P DI ++ EL V +
Sbjct: 771 ----SWPFVDETTNERYSDLRDLEVLVARQPACRRSDIQKVRTVIHPELSHLVDVA---- 822
Query: 701 FFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHF 736
F GP LA ++ GGD+DGD++++ L++ F
Sbjct: 823 VFSSKGPFPLAGKLQGGDYDGDIFWICWEDTLVQPF 858
>gi|58269288|ref|XP_571800.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|58269290|ref|XP_571801.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|58269292|ref|XP_571802.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|57228036|gb|AAW44493.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|57228037|gb|AAW44494.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|57228038|gb|AAW44495.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 1120
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 98/387 (25%), Positives = 167/387 (43%), Gaps = 55/387 (14%)
Query: 500 IQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDI 559
I++RPSMIK K+ DL+D N + + K + +L+R I ++ GVP + I
Sbjct: 585 IRLRPSMIKFKS--DLAD---LNVIRIAKY----QAAFLNRQFINIMCANGVPHELIIGI 635
Query: 560 LRNALDDARGVFSNKRNALKVSFN---YGGMDYDFTSARMILSGISLDEPYLQHRLSILM 616
+A+ D +G F ++ V+ N + DF A++I SG + + P L +I+
Sbjct: 636 FEDAIADIKG-FKDRVWNNAVTENDQQLIALCNDFPLAQLIKSGFN-ENPLLLDVAAII- 692
Query: 617 KEEKKSLQ----AGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEK-----VLV 667
E ++LQ ++ + + YL+G D TG LK EV ++ S K VLV
Sbjct: 693 --ECRALQDLKWRARVKLLDGVYLIGIADETGTLKEGEVFCQFQENDESPPKIVVNEVLV 750
Query: 668 YRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVS 727
R P D+ A EL K I F G R + + GGD DGD Y +
Sbjct: 751 CRAPAC---DVRRAWAVDNPELRHL----KNVIVFSTQGMRDMPSMLGGGDLDGDDYTLI 803
Query: 728 RNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAAD 787
+ ++ K + + + + K + + + L + LN + +
Sbjct: 804 WDQRFVQSLKVYDPMDYEAPDPISVKHV---TQKHLNENFVQYILN------DVLGQVDN 854
Query: 788 CWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFP 847
C A+ D + L L I+ A+D K+G + L+ +++P
Sbjct: 855 CHLALSDMY-----------TPFDPRCLHLSEIHSTAVDF-AKTGQAAALDPSLRPKEWP 902
Query: 848 CYMRRDE-SVSFESTSVLGTIYNTVKS 873
+M +D+ V +EST +LG I+ V++
Sbjct: 903 DFMDKDDVKVVYESTGILGKIFRIVQA 929
>gi|395332591|gb|EJF64970.1| RdRP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 1236
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 102/455 (22%), Positives = 184/455 (40%), Gaps = 92/455 (20%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P Q+R KG ++++++L +++R SM K + + + + +E+ K
Sbjct: 621 PSAFQIRFL----GCKGIVVVDEQLEGIKLRLRDSMKKFHVEH-MREAE----IEIAKAF 671
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNA---LDDARGVFSNKRNALKVS--FNYG 585
+P L R LIA+L G+ + L + A + +AR L+ N
Sbjct: 672 IKPGPARLCRPLIAVLEDRGIHKQHLLALQEKAKKKVVEARDTIEQTAGLLRDHDLGNVY 731
Query: 586 GMDYDFTSARMILSGISLDEPYLQHRL-------------SILMKEEKKSLQAGKLPVTE 632
G+ Y R +P +H + + ++ E K ++P+ E
Sbjct: 732 GLRYILEHLRKAGVDTGKKKPRARHIMDNEFIARLIDYAQTHILSEIKHD---ARIPIEE 788
Query: 633 SYYLMGTVD--PTGILKSN--EVCIILKDGQV--------SWEKVLVY------RNPGLH 674
++ L+G D P I + E I LK+G++ S E + + R+P +H
Sbjct: 789 AHQLVGCADEGPAYIAAGHDPEKVICLKEGEIFACVQQPDSDEPIYIQGLVSISRSPHIH 848
Query: 675 FGDIHVLKATYVKELED-----FVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRN 729
GD+ ++A K +D F + + P G RSLA +AGGD DGD + V ++
Sbjct: 849 PGDVQRVRAIG-KPPDDPDKVCFFRNLRNVVVMPSVGDRSLASMLAGGDVDGDEFLVIKD 907
Query: 730 PELLK-HFKESERWMSTSKNL----SANKRLIDFSLEELESELFKLFLNTRFCPSNAKSL 784
LL E ++ S + DF +E ++S++ L
Sbjct: 908 MTLLPTTLVEPASYVGVKPEPLDRDSTVDDICDFFMEYMQSDVVGL-------------- 953
Query: 785 AADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEV---PEDL 841
V D L + D+S + E+ +RL + A+D P K+G+ V V P L
Sbjct: 954 -------VADLHLVIADQS--KYGTFDEDCMRLAQLCSQAVDYP-KNGVPVNVENMPRKL 1003
Query: 842 KVEKFPCYMRRDES-----VSFESTSVLGTIYNTV 871
+ P + + +++ +EST LG ++ +
Sbjct: 1004 -IRAKPDWKKPEDTDYRPADYYESTRALGELFRNI 1037
>gi|296417840|ref|XP_002838558.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634502|emb|CAZ82749.1| unnamed protein product [Tuber melanosporum]
Length = 1700
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 75/319 (23%), Positives = 128/319 (40%), Gaps = 62/319 (19%)
Query: 469 EPPLLMQVRLFYNGTAVKGTLLLNKKLPPQT----IQIRPSMIKVKADRDLSDGQTFNSL 524
E P +Q RL KG +++ + + I++ S +K D D +L
Sbjct: 1059 ETPTAVQARL----GGAKGVWMIDPSIDWSSDEIFIKVTDSQLKYSGYADDQDWARM-TL 1113
Query: 525 EVVKTSNQPRKTYLSRNLIALLSYGGVP---------------EIFFLDILRNALDDARG 569
+++ S++PR ++ LI +L GVP ++ ++ +
Sbjct: 1114 DILHISHEPRPATINIQLIPILENRGVPFQALKELTEEHLEEDLDELFQVIDKPVELRKW 1173
Query: 570 VFSNKR-NALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMK----------E 618
+++ ++SFN + S + ++ + L+ +L +LM E
Sbjct: 1174 IYNRGSVGRARISFNGIQVTGSMPSTKHEMAILLLESGFLVRSCRVLMDHVRVMIDQYCE 1233
Query: 619 EKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDG----------QVSWEKVLVY 668
E K ++P S L+ DPTG L+ EV + +G QV +LV
Sbjct: 1234 ELKEKLHIRIP--HSTTLLCVADPTGTLREGEVSLRFSNGFLDPKTLRRTQVITGDILVA 1291
Query: 669 RNPGLHFGDIHVLKATYV--------KELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFD 720
RNP DI +KA + +EL+D I F G +SLA ++GGD+D
Sbjct: 1292 RNPAHIPSDIQKVKAVDIQPYHSLALRELQD-------VIVFSTQGDQSLASLLSGGDYD 1344
Query: 721 GDMYFVSRNPELLKHFKES 739
GD +V L+K F S
Sbjct: 1345 GDKPWVCWEERLVKPFTNS 1363
>gi|402580635|gb|EJW74584.1| hypothetical protein WUBG_14509 [Wuchereria bancrofti]
Length = 168
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 64/110 (58%), Gaps = 9/110 (8%)
Query: 664 KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDM 723
KV++ +NP + GD+ V +A + EL V + FP +GPR DE+AG D DGD
Sbjct: 41 KVMLTKNPCIVAGDVRVFEAVDIPELHHLVDV----VVFPQHGPRPHPDEMAGSDLDGDE 96
Query: 724 YFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLN 773
Y V + +L+ F+ +E + +K+ S NK +ID + +++ E+ K F+N
Sbjct: 97 YSVIWDQKLI--FEHNEPPLDFTKSTSGNK-IIDEA--QVDLEMRKFFVN 141
>gi|341885452|gb|EGT41387.1| hypothetical protein CAEBREN_32717 [Caenorhabditis brenneri]
Length = 1562
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 80/191 (41%), Gaps = 35/191 (18%)
Query: 628 LPVTESYYLMGTVDPTGILKSNEVCI-------------ILKDGQVSWEKVLVYRNPGLH 674
LP + G VD TG+L+ +V I ILK G KVL+ +NP
Sbjct: 999 LPPDLGRSMYGVVDETGLLQYGQVFIQYSQSIRQTSATPILKTG-----KVLITKNPCHV 1053
Query: 675 FGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLK 734
GD+ V +A + L V + FP +GPR DE+AG D DGD Y + + E+L
Sbjct: 1054 PGDVRVFEAVWQPALAHLVDV----VVFPRHGPRPHPDEMAGSDLDGDEYSIIWDQEMLL 1109
Query: 735 HFKESERWMSTSKNLSANKR-----LIDFSLEELESELFKLFLNTRFCPS--------NA 781
+ E +S +K +++F L L+ + N + N
Sbjct: 1110 DYNEEAMIYPSSTAPEEDKEPTTDDMVEFFLRYLQQDSIGRMSNAHLTYADLHGLFHENC 1169
Query: 782 KSLAADCWQAV 792
+++A C AV
Sbjct: 1170 RNIALKCAVAV 1180
>gi|388851646|emb|CCF54642.1| related to RNA-directed RNA polymerase [Ustilago hordei]
Length = 1557
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 118/285 (41%), Gaps = 30/285 (10%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P +Q+RL KG L +N +L + + IRPSM K G LEV S
Sbjct: 626 PSAIQMRL----GGSKGVLAVNPRLRGKVLIIRPSMTKF--------GSPHQDLEVANAS 673
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKV--SFNYG--- 585
+ R L+R LI L GVP F++I A+ S+ + A ++ +F++G
Sbjct: 674 TRARPAKLNRPLINALEDRGVPASAFMEIQDEAITLIGRARSDFQAAARLCSAFSFGTGC 733
Query: 586 ---GMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDP 642
+ S + + +D +L S+ + ++P T ++G D
Sbjct: 734 NLRSLFQKLHSLGLGGKTVHVDSFFLVIAKSVTAAALGDMKRKARIP-TRGVTMLGIADE 792
Query: 643 TGILKSNEVCI---ILKDGQVSWEKVLVYRN-----PGLHFGDIHVLKATYVKELEDFVG 694
+LK EV ++ G+V+ ++LV RN P + D+ ++K +
Sbjct: 793 FSLLKEGEVFAQVESVESGKVT-RRILVGRNLIGRSPTVDPADVAMVKCVKPPPGHPLLQ 851
Query: 695 TSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKES 739
+F C+ + + GGD DGD+Y + + L ++S
Sbjct: 852 LRNVIVFDTCSRDQPFPRRLGGGDCDGDLYTIYEDDRLFTKAQQS 896
>gi|398407389|ref|XP_003855160.1| RNA-directed RNA polymerase [Zymoseptoria tritici IPO323]
gi|339475044|gb|EGP90136.1| RNA-directed RNA polymerase [Zymoseptoria tritici IPO323]
Length = 1316
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 81/307 (26%), Positives = 128/307 (41%), Gaps = 53/307 (17%)
Query: 478 LFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKAD--RDLS-DGQTFNSLEVVKTSNQPR 534
++Y + G+ + K P I I S IKV+ D D D + FN VVK ++ R
Sbjct: 639 VWYRAAEIDGSFDVGKPPGPH-ITIVQSQIKVQRDSLEDCDPDQRKFN---VVKANSYAR 694
Query: 535 KTYLSRNLIALLSYGGVPEIFFLDILRNALDD---------------ARGVFSNKRNALK 579
+ L + +L GVP LD+ R + A ++ + +N L
Sbjct: 695 PSLLHAGFMPILLDRGVPRQVMLDVARTQIKAEVDACEAAIVSPDPLAFRMWLHSQNELY 754
Query: 580 VSFNY---GGMDY--------DFTSARMILSG-ISLDEPYLQHRLSILMKEEKKSLQAG- 626
N GG+D + R++ SG + PYL + L+K Q
Sbjct: 755 EERNRTRDGGIDTVAGWPIRREERIIRLLESGFVPTQCPYLARDVIDLVKYTFDLKQRNF 814
Query: 627 KLPVTESYYLMGTVDPTGILKSNEVCI---------ILKDG--QVSWEKV---LVYRNPG 672
K+ + S LMG DP G L+ EV + + K+ +S +V LV RNP
Sbjct: 815 KIRLGRSTTLMGIADPKGCLEPGEVHVNFSAPFIDPVTKEQFQNLSSPEVAFGLVARNPA 874
Query: 673 LHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPEL 732
+ DI ++ Y EL+ + F G R LA ++ GGD+DGD +++ + +L
Sbjct: 875 MAAWDIQRVRFVYKPELKHLTDLA----VFSSRGHRPLASKLQGGDYDGDTFWICWDRKL 930
Query: 733 LKHFKES 739
FK +
Sbjct: 931 ATLFKNA 937
>gi|341885460|gb|EGT41395.1| CBN-RRF-3 protein [Caenorhabditis brenneri]
Length = 1736
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 80/191 (41%), Gaps = 35/191 (18%)
Query: 628 LPVTESYYLMGTVDPTGILKSNEVCI-------------ILKDGQVSWEKVLVYRNPGLH 674
LP + G VD TG+L+ +V I ILK G KVL+ +NP
Sbjct: 1010 LPPDLGRSMYGVVDETGLLQYGQVFIQYSQSIRQTSATPILKTG-----KVLITKNPCHV 1064
Query: 675 FGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLK 734
GD+ V +A + L V + FP +GPR DE+AG D DGD Y + + E+L
Sbjct: 1065 PGDVRVFEAVWQPALAHLVD----VVVFPRHGPRPHPDEMAGSDLDGDEYSIIWDQEMLL 1120
Query: 735 HFKESERWMSTSKNLSANKR-----LIDFSLEELESELFKLFLNTRFCPS--------NA 781
+ E +S +K +++F L L+ + N + N
Sbjct: 1121 DYNEEAMIYPSSTAPEEDKEPTTDDMVEFFLRYLQQDSIGRMSNAHLTYADLHGLFHENC 1180
Query: 782 KSLAADCWQAV 792
+++A C AV
Sbjct: 1181 RNIALKCAVAV 1191
>gi|409052182|gb|EKM61658.1| hypothetical protein PHACADRAFT_135496 [Phanerochaete carnosa
HHB-10118-sp]
Length = 913
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 68/158 (43%), Gaps = 16/158 (10%)
Query: 595 RMILSGISLDEPYLQHRLSILMKEEKKSLQAG-KLPVTESYYLMGTVDPTGILKSNEVCI 653
R+I +G + +E Y + K+ +LP+ S DPTG L+ NE+
Sbjct: 433 RLIGAGFTPEEEYTHDEYQKVRDRVLKAFFDNLRLPLRASAEAFIVPDPTGKLRENEIYF 492
Query: 654 I-----------LKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFF 702
+ D + L+YRNP D+ ++A V EL + K I
Sbjct: 493 RSSTLAFEDSPNIYDCHLMLGDCLLYRNPARLASDVRKVRAVDVPELVLY----KDVIVV 548
Query: 703 PCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESE 740
PC GP SL +AGGD DGD +P L+K F +E
Sbjct: 549 PCKGPVSLPSMLAGGDVDGDTAVCIWDPALVKPFTNAE 586
>gi|336378305|gb|EGO19463.1| hypothetical protein SERLADRAFT_442939 [Serpula lacrymans var.
lacrymans S7.9]
Length = 733
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 110/267 (41%), Gaps = 45/267 (16%)
Query: 462 RTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTF 521
+ H P Q R+ KG L+ + +L + +RPS K D
Sbjct: 152 KKHKHVKNVPSAYQFRI----GGAKGVLVQDPRLEGNVVCLRPSQTKF-------DAPGI 200
Query: 522 NSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSN-------- 573
+L++ TS+QP+ +L+R LI LL Y G + + NA+ +A+ ++
Sbjct: 201 RTLDIQSTSSQPKAMFLNRPLIVLLEYLGTDSNHIIALQNNAISEAQTAHNSFLDASKMF 260
Query: 574 KRNALKVSFNYGGMDYDFTSARMILSG---ISLDEPYLQHRL--SILMKEEKKSLQAGK- 627
++N SF + ++ + I G + L +H L +L +L+ K
Sbjct: 261 QKNNFGASFRLPSLFHNLATLLDIHPGDSSLGLVSTSWKHDLVAKLLQCVSTYALRELKY 320
Query: 628 ---LPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEKVLVYRNPGLHFGDIHVLKAT 684
+ V SY L+G + TG+ KS E +VL+ R+ +H GD+ V+ A
Sbjct: 321 RAHIAVPGSYTLLGD-ERTGLYKSIE------------GRVLITRSAQIHPGDVQVVTAV 367
Query: 685 YVKELEDFVGTSKYAIFFPCNGPRSLA 711
EL + F C G RSLA
Sbjct: 368 RHPELSHLTNV----VVFSCKGNRSLA 390
>gi|340959153|gb|EGS20334.1| RNA polymerase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1441
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 74/149 (49%), Gaps = 20/149 (13%)
Query: 607 YLQHRLSILMKEEKKSLQAGKL--PVTESYYLMGTVDPTGILKSNEV--------CIILK 656
YLQ +L+ ++ ++ L KL V S Y+ VD G+L+ NEV C
Sbjct: 889 YLQ-KLAWELQYQRCELLKTKLNIKVGRSAYVYMVVDFWGMLEENEVHLGFSSRFCANTD 947
Query: 657 DGQVSWE-----KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLA 711
Q S+ VLV R+P D+ ++A + EL K I FP G +LA
Sbjct: 948 LDQESFTLLADCDVLVARSPAHFVSDVQKVRAVFKPELHAL----KDVIVFPLKGNVALA 1003
Query: 712 DEIAGGDFDGDMYFVSRNPELLKHFKESE 740
D+++GGD+DGDM +V +P+++ F +E
Sbjct: 1004 DKLSGGDYDGDMAWVCWDPDIVNSFTNAE 1032
>gi|154273921|ref|XP_001537812.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150415420|gb|EDN10773.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 652
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 111/278 (39%), Gaps = 56/278 (20%)
Query: 605 EPYLQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKS--------------- 648
EP++ L + + K L + K+ + E +L+G +D T LK
Sbjct: 37 EPFVSSILELWRTWQIKYLKEKAKIAIDEGAFLLGCIDETKTLKGYFRSSRPGQDATYEE 96
Query: 649 NEVCIILKDGQVSWEK-----------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSK 697
+ C+ QV W ++ RNP LH GDI V+KA L +
Sbjct: 97 SVACLPEIFVQV-WRHSEGKYVIIEGVCILARNPSLHPGDIRVVKAVNAPSLHHL----R 151
Query: 698 YAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLI- 756
+ P G R ++ +GGD DGD Y V + ++L W + +A K +
Sbjct: 152 DVVVLPQTGDRDISSMCSGGDLDGDDYVVIWDQDIL-----PTDWFHNPMDYAAPKPEVL 206
Query: 757 --DFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENM 814
D +++++ N R P A + L L D E+ E
Sbjct: 207 DRDVTVDDITKFYVNYMQNDRL-PQIALA------------HLALADYM--EEGVKNEKC 251
Query: 815 LRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRR 852
L+L ++ A+D KSGI V++ DLK ++P +M R
Sbjct: 252 LQLAALHSAAVDY-NKSGIPVKLTRDLKPRRWPHFMER 288
>gi|154285562|ref|XP_001543576.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150407217|gb|EDN02758.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1055
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 71/151 (47%), Gaps = 20/151 (13%)
Query: 603 LDEPYLQHRLSI--LMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQV 660
+DEP L + L+++ +L+ K+ V++S + DP G+L+ +EV +
Sbjct: 547 MDEPQLTFEVVQWRLLQDYLDNLKKLKITVSQSTFAYCVADPFGVLRPDEVHLGFSR--- 603
Query: 661 SWEK-----------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRS 709
WE VL+ R P DI K+ Y EL K I FP G
Sbjct: 604 EWEHGSAGTELHDIDVLLARLPAHLATDIQKRKSVYKNELRHM----KDVIVFPTTGDTP 659
Query: 710 LADEIAGGDFDGDMYFVSRNPELLKHFKESE 740
LA ++GGD+DGD +V +P +++ FK +E
Sbjct: 660 LASLLSGGDYDGDQCWVCWDPIIVREFKSTE 690
>gi|290980534|ref|XP_002672987.1| predicted protein [Naegleria gruberi]
gi|284086567|gb|EFC40243.1| predicted protein [Naegleria gruberi]
Length = 942
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 88/358 (24%), Positives = 153/358 (42%), Gaps = 56/358 (15%)
Query: 415 TDGTGFISEDL-------ALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHY 467
TDG G ED P Y + +K D+ + + E NF +++
Sbjct: 271 TDGAGMAVEDFFEQVLENTYSVP-YFFMDKLFESDTKQGRL----FEKNFKNISA----- 320
Query: 468 GEPPLLMQVRLFYNGTAVK-------GTLLLNKKLPPQT-IQIRPSMIKVKADRDLSDGQ 519
MQVR+ ++ LL KLP T + +R SM+K + + +
Sbjct: 321 ------MQVRILGAKGVIQKVNKSMWAELLKKHKLPSNTKVILRNSMVKFEGNYSI---- 370
Query: 520 TFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALD-DARGVFSNKRNA- 577
+N ++++ + + ++RN+++ L E + +N + + NK N
Sbjct: 371 -YNKIDILNVA-RVHGGNINRNIMSCLLQMTTNEEEMEKLFKNFYETQLMEIVENKDNPE 428
Query: 578 --LKVSFNYGGMDYDFTSAR-MILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESY 634
V + G + AR +I++ SLD ++ + ++ + +S+ + KL + +
Sbjct: 429 YLCNVLLSQSGETSQESIARDLIMAEHSLDNYFISSVVKDNIESKFESMVSDKLSMKCKH 488
Query: 635 --YL--MGTVDPTGILKSNEVCI-----ILKDGQVSWEKVLVYRNPGLHFGDIHVLKATY 685
+L MG D + LK +EV I I +KVLVYRNP + GDI LK
Sbjct: 489 PGFLSGMGVYDESSTLKHDEVHIPCSKLIRSLDYAKIDKVLVYRNPLAYEGDIQCLKLVK 548
Query: 686 VKELEDFVGTSKYAIFFPCNGPRSLADE----IAGGDFDGDMYFVSRNPELLKHFKES 739
E F+ + + I F N E +AGGD DGD+Y + +PE++K F ++
Sbjct: 549 HPPTE-FLQSRRDVIVFGHNPNYKKVPEPLCYMAGGDLDGDLYEIIFDPEIVKLFDQN 605
>gi|384493387|gb|EIE83878.1| hypothetical protein RO3G_08583 [Rhizopus delemar RA 99-880]
Length = 1222
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 15/157 (9%)
Query: 594 ARMILSGISLDEPYLQHRLSILMKEEKKSLQAG-KLPVTESYYLMGTVDPTGILKSNEVC 652
R++ SG L ++ R++ + ++ KS+ K+ V +S + DPTG L+ +EV
Sbjct: 699 VRLLDSGFDLSNAFIASRVTFIFRQVMKSVNTKYKVEVAQSCTVTCIPDPTGTLEPDEVF 758
Query: 653 IILKDGQVSWEK----------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFF 702
+ L +V V+V RNP D+ +KA L + I F
Sbjct: 759 LQLSTRKVDERTGVCAGLITGDVIVTRNPCGLKSDVQKVKAVDCPALRMYTD----LIIF 814
Query: 703 PCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKES 739
G SLA ++ GGD+DGD+ + + +++ FK S
Sbjct: 815 SVKGDTSLASKLGGGDYDGDLIYCCWDQRIVEPFKPS 851
>gi|350635543|gb|EHA23904.1| hypothetical protein ASPNIDRAFT_40039 [Aspergillus niger ATCC 1015]
Length = 1307
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 119/289 (41%), Gaps = 58/289 (20%)
Query: 500 IQIRPSMIKVKA-----DRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEI 554
IQI S +K+K D + D + + EVVK S L+ L+++L +GG +
Sbjct: 686 IQISDSQLKIKPHPCQWDESVDDEKL--TFEVVKWSKPLHPVNLNIQLLSILDHGGHIKE 743
Query: 555 FFLDILR-----------NAL-------------------DDARGVFSNKRNALKVSFNY 584
D+ R N L DD G S + + N+
Sbjct: 744 HLADLTRLGIQSVYQEFANVLQSDSAVLCRSLVQKIRPSGDDGFGPVSQRTWRFE---NW 800
Query: 585 GGMDYDFTSARMILSGISLDEPY-LQHRLSILMKEE-KKSLQAGKLPVTESYYLMGTVDP 642
D +F R+ +G Y L+ RL ++E K+ + ++ V S Y DP
Sbjct: 801 MSSDAEFI-IRLTEAGFCPRSFYFLRKRLGKCLRELLKRHVDELRIEVPLSTYAFCIADP 859
Query: 643 TGILKSNEVCIIL----KDGQVSWEK-------VLVYRNPGLHFGDIHVLKATYVKELED 691
G+LK +EV +DG+ +E VLV R P DI KA + EL
Sbjct: 860 YGVLKEDEVHFGFSNNWRDGKGQFEDILLDGIDVLVGRLPAHLPSDIQRRKAVWKSELRH 919
Query: 692 FVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESE 740
F K I FP G LA ++GGD+DGD ++ + ++++F S+
Sbjct: 920 F----KDVIVFPSVGSIPLAHMLSGGDYDGDTPWICWDQNIVQNFNNSK 964
>gi|299470095|emb|CBN78124.1| RNA-dependent RNA polymerase 1 [Ectocarpus siliculosus]
Length = 1102
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 95/428 (22%), Positives = 174/428 (40%), Gaps = 116/428 (27%)
Query: 500 IQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPE------ 553
+ +RPSM K ++R N+LEV++ + Q YL+R I LL GVP+
Sbjct: 502 VLVRPSMQKFPSER--------NTLEVIQYARQ-LPCYLNRQFITLLGTLGVPDKVIEER 552
Query: 554 ----IFFLD-ILRNALDDARGVFSNKRNALKVSFNY--GG------MDYDFTSARMILSG 600
+ LD +LR L D + AL +N GG + + + M+ +G
Sbjct: 553 YSAMVSTLDKVLRTMLSDP----AEAEMALVRYYNITSGGKTGRKQVGPLWEALAMVRAG 608
Query: 601 ISL-DEPYLQHRLSILMKEEKKSL----QAGKLPVTESYYLMGTVDPTGILKSNEVCIIL 655
I++ EP+LQ S+L K++ ++ V ++ L+G VD TG L+ + L
Sbjct: 609 INIRTEPFLQ---SVLHATRDKAMIDLRHRTRIFVPDASCLLGIVDETGFLQPGQASDSL 665
Query: 656 KDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIA 715
V+ H+ +A+ + + F + +++
Sbjct: 666 GCRSVN------------HY---TANRASIMTNADRFGQCTPEP------------SKMS 698
Query: 716 GGDFDGDMYFVSRNPELLKHFKE--------SERWMS-------------TSKNLSAN-- 752
GGD DGD+Y V + +LL +E SE + TS + S
Sbjct: 699 GGDLDGDLYSVVWDQDLLPPEREGVAGVQGDSENGFNFPAMGYEPPEKPKTSASSSGKGV 758
Query: 753 --KRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAM 810
K + DF L+ ++++ N ++ L A C
Sbjct: 759 DMKEIADFFLKYIQNDNLGKIANAHLVRADLSPLGARC---------------------- 796
Query: 811 KENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNT 870
+ L+L ++ A+D PK SG+ P++LKV+ +P +M +++++++ S ++G ++
Sbjct: 797 -DECLQLAALHSKAVDFPK-SGVPAVFPDELKVDSYPDFMCKEDNMTYLSKKLIGRLFRD 854
Query: 871 VKSYEAVD 878
A +
Sbjct: 855 TPPAGAAN 862
>gi|290994090|ref|XP_002679665.1| predicted protein [Naegleria gruberi]
gi|284093283|gb|EFC46921.1| predicted protein [Naegleria gruberi]
Length = 1014
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 90/197 (45%), Gaps = 15/197 (7%)
Query: 558 DILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMK 617
+I N LDD + RN NY T + I D P + + +++
Sbjct: 492 EIFMNDLDDYLKEMEDNRNDPIYVCNYLLTGTGNTKEGLAKQLIMADHPLNNYFIDSVIR 551
Query: 618 EEKKSLQAGKLPVTESYYL--------MGTVDPTGILKSNEV---CIILKDGQ--VSWEK 664
E K+ G + S+ + +G VD +G LK E+ C + + +
Sbjct: 552 ENIKTRHLGLVNDNLSFKINSHYCVSALGGVDESGELKEGEIHINCDAFTNSPYYLELDY 611
Query: 665 VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCN-GPRSLADEIAGGDFDGDM 723
VLVYRNP + GDI LK + E F+ + + +I F + G R+ + GGDFDGD
Sbjct: 612 VLVYRNPLGYEGDIQKLKIKKNPQSE-FLKSRRNSITFAMSKGTRNPIGFMQGGDFDGDR 670
Query: 724 YFVSRNPELLKHFKESE 740
Y + +P+++K+FK+ E
Sbjct: 671 YNIIFHPKIVKYFKQDE 687
>gi|380489167|emb|CCF36884.1| RNA-directed RNA polymerase [Colletotrichum higginsianum]
Length = 1354
Score = 60.1 bits (144), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 13/135 (9%)
Query: 621 KSLQAGKLPVTESYYLMGTVDPTGILKSNEVCI---------ILKDGQVSWEKVLVYRNP 671
K L+ + V ES YL +D +L+ EV + D + VLV R+P
Sbjct: 853 KLLKKMSIKVPESAYLFMVIDFWNVLEEGEVHLCFSSKFQTDTFSDSMLHGCDVLVARSP 912
Query: 672 GLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPE 731
D+ +KA + EL K I F G LAD+++GGD+DGD +V +P
Sbjct: 913 AHFVSDVQRVKAVFKPELHAI----KDVIVFSAKGNVPLADKLSGGDYDGDKAWVCWDPA 968
Query: 732 LLKHFKESERWMSTS 746
++ +FK +E S S
Sbjct: 969 IVLNFKNAETPASPS 983
>gi|393232270|gb|EJD39854.1| hypothetical protein AURDEDRAFT_171128 [Auricularia delicata
TFB-10046 SS5]
Length = 1291
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 19/159 (11%)
Query: 595 RMILSGIS-LDEPYLQ-HRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVC 652
RM+ SG + P L+ H ++L ++ L+ ++ +T S M D + +L NE
Sbjct: 804 RMLFSGFDPVTCPILRSHIRTVLRTSTEQYLKKFRVEITMSAEAMIISDTSLVLGENE-- 861
Query: 653 IILKDGQVSWEK-----------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIF 701
I L +V + VLVYRNP DI +KA Y EL+ + + I
Sbjct: 862 IFLSSSKVLLDNSGRTMNHLSGDVLVYRNPVRLPCDIQKVKAVYKPELDHY----RDVIV 917
Query: 702 FPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESE 740
F G RSLA ++AGGD+DGD V + ++++ F ++
Sbjct: 918 FSAKGTRSLASKLAGGDYDGDTAVVIWDQDIVRLFNHTK 956
>gi|440298585|gb|ELP91216.1| RNA-dependent RNA polymerase, putative [Entamoeba invadens IP1]
Length = 1008
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 118/282 (41%), Gaps = 32/282 (11%)
Query: 469 EPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVK 528
E P Q+R VKG + ++ + I RPS IK++A + L VV+
Sbjct: 417 EEPAAFQIRF----AGVKGVVSVDCLDKSENIYFRPSQIKIEAF-----PERVQKLRVVQ 467
Query: 529 TSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVS-FNYGGM 587
Q R ++ L L Y +P F+ + L R F++ N V F
Sbjct: 468 IP-QYRSGRMNEQLALGLEYLEIPIPNFIQCAKEYL---RKYFTSIPNDEVVRLFQKNAK 523
Query: 588 DYDFTSA-RMILSGIS----LDEPYLQHR---LSILMKEEKKSLQAGKLPVTESYYLMGT 639
+ A +M+++ +EP+++ L + M EK K + S +LMG
Sbjct: 524 NPTVAIALKMVMAAGRDSKIFEEPFVKANSLVLRMAMLSEKSDFI--KFDIDNSAFLMGV 581
Query: 640 VDPTGILKSNEVCIILKDGQV--SWEKVLVYRNPGLHFGDIHVLKATYVKEL-EDFVGTS 696
+D TGIL+ +V I L V ++L + P H GD +L+ L E G
Sbjct: 582 MDETGILEEGQVFIQLSSNSVFVPSSRLLAVKFPATHPGDFLLLRNVCENVLFERKRGYE 641
Query: 697 KYA-----IFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
+ A I F G R +++AGGD DGD Y V NP L
Sbjct: 642 RLAYLKDVIVFSSKGYRPDPNKMAGGDLDGDEYLVIWNPLFL 683
>gi|389627942|ref|XP_003711624.1| RNA-dependent RNA polymerase [Magnaporthe oryzae 70-15]
gi|351643956|gb|EHA51817.1| RNA-dependent RNA polymerase [Magnaporthe oryzae 70-15]
Length = 1261
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 92/186 (49%), Gaps = 23/186 (12%)
Query: 572 SNKRNAL-KVSFN---YGGM---DYDFTSARMILSGIS-LDEPYLQHRLSILMKEEKKSL 623
SN R L SF GG+ D D A M+ +G + + YLQ + K++ ++L
Sbjct: 722 SNHRQGLGNTSFEVPRLGGLPERDEDVM-AEMVRAGFNPRGQKYLQDIAWNIQKQKCETL 780
Query: 624 QAG-KLPVTESYYLMGTVDPTGILKSNEV---------CIILKDGQVSWEKVLVYRNPGL 673
+ + V S Y + VD G++ EV C ++ ++VLV R+P
Sbjct: 781 REKLNIKVGMSTYALMVVDFWGVVPEGEVHLCFSEKFTCDGFSGTLLNDQEVLVARSPAH 840
Query: 674 HFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
+ DI +KA + EL+D K I F NG +LAD ++GGD+DGD+ +V + +++
Sbjct: 841 YVSDIQKVKAVFRPELKDL----KDVIVFSRNGNVALADRLSGGDYDGDIAWVCWDSKIV 896
Query: 734 KHFKES 739
+F+ +
Sbjct: 897 DNFQNA 902
>gi|308474534|ref|XP_003099488.1| hypothetical protein CRE_01169 [Caenorhabditis remanei]
gi|308266677|gb|EFP10630.1| hypothetical protein CRE_01169 [Caenorhabditis remanei]
Length = 1637
Score = 59.7 bits (143), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 106/258 (41%), Gaps = 39/258 (15%)
Query: 502 IRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILR 561
RPS IK + R D +E+VK S P L++ I +L V E+ L+ R
Sbjct: 745 FRPSQIKFISKRHPRD-----QVEIVKYS-APVPVSLNKPFINILD--QVSEMQSLECHR 796
Query: 562 NA-------LDDARGVFSNK-------RNALKVSFNYGGMDYDFTSARMILSGISLDEPY 607
LD F+ + RN LK +DY T+ LS
Sbjct: 797 RVTNRIEELLDRQMLQFAQQMVDETFCRNRLKELPRRVDIDYLRTTWGFTLSSEPFFRSL 856
Query: 608 LQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDG--------- 658
++ + L+ + + Q +P ++G VD TG L+ ++ + L
Sbjct: 857 IKASIKFLITRQLRKEQI-PIPADLGRSMLGVVDETGRLQYGQIFVQLTKNLALKIPPKT 915
Query: 659 ---QVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIA 715
QV VL+ +NP + GD+ + +A + EL + FP +GPR DE+A
Sbjct: 916 AARQVLTGTVLLTKNPCIVAGDVRIYEAVDIPELHHM----NDVVVFPQHGPRPHPDEMA 971
Query: 716 GGDFDGDMYFVSRNPELL 733
G D DGD Y + + +LL
Sbjct: 972 GSDLDGDEYSIIWDQQLL 989
>gi|389748402|gb|EIM89579.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1346
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 169/766 (22%), Positives = 295/766 (38%), Gaps = 176/766 (22%)
Query: 184 RGMRDLQMARFESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHIS-TKGNCTFKGPY 242
RG D+ +A F+ V E RK + Q R+ L K H Y HI+ T +GP
Sbjct: 387 RGPNDMPVAMFKRVVGEFDHRKALLQ---RLKLS----KGHFYCHHITFTPTRTILEGPN 439
Query: 243 LNQTRTHLQRELGDD-----NILLVKF-DEELGGHRSSNNWNDSY---SKYNEIAREGIL 293
Q+ +++ D N + V F DE+ +R + + +Y + I + G
Sbjct: 440 PTQSNRVIRKYQEIDPTFTENFIRVDFRDEDRLSYRWDRDVDGTYFLQQRVGHILKNGFE 499
Query: 294 VGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVR---MESSAFIDMGYQYILSGKTVHEA 350
+ R + F + E +FV + SS G ++G + ++
Sbjct: 500 LAGRDFEFLAYSTSALREHA---------VWFVHPFHLPSSHPSHSGT--YVNGHYIRQS 548
Query: 351 RYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGE 410
F +V + + Y +R++ + T V +R E +ED D +
Sbjct: 549 LGDFSNV--IRQPSKYAARIAQAFTAT-DPSVKVTRDQWEEMED-----------IGDDD 594
Query: 411 ALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEP 470
+HTDG G IS +L ++ E C E +D H G
Sbjct: 595 RYLHTDGVGTISLELG----GMIWAELC------ESRLD----------------HGGNT 628
Query: 471 --PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVK 528
P Q+R KG ++++ +L +++RPSM K D D LE+ +
Sbjct: 629 VRPSAYQIRFL----GYKGMVVIDHRLVGIKMRLRPSMRKFVVDNDED-----AWLEIAR 679
Query: 529 TSNQPRKTYLSRNLIALLSYGGVPEIFFLDI------LRNALDDARGVFSNKRNALKVSF 582
+P L+R L+ +L GV + F+ + L D+ F + + F
Sbjct: 680 AFERPNSFSLNRALVMILEDRGVRKESFISLQEQTKSLIYTSSDSIEKFVSLLRTHGMGF 739
Query: 583 NYG-----------GMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQ-AGKLPV 630
Y G+D+ T+ +++ +L L M + ++ ++PV
Sbjct: 740 GYHLPFILEQLVKLGLDFKETNRD---GSKAIENAFLGRVLRFAMNGCLRDIKHKAQIPV 796
Query: 631 TESYYLMGTVDPTGI------LKSNEV------CII--LKDGQVSWEKVL-----VYRNP 671
SY L+G D G+ L + V CI +++G S K L + R+P
Sbjct: 797 PGSYKLVGCAD-EGLAYIREGLDKDSVYTLPAGCIFACVQEGPGSETKFLKGPCMISRSP 855
Query: 672 GLHFGDIHVL---------KATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGD 722
+H GDI + K + K+L++ V A + RSLA + GGD DGD
Sbjct: 856 VVHPGDIQRVWAVGEPPKDKICFFKDLKNLVVLPSVADP-SSDTDRSLASMLGGGDLDGD 914
Query: 723 MYFV-----SRNPELLKHFKESERWMSTSKNLSANKR---LIDFSLEELESELFKLFLNT 774
Y + S PE+ H + ++ + ++ L + + DF +E + S++ L
Sbjct: 915 QYDIIIDNGSLMPEV--HSQPADYTGAGTRTLDRDATVDDICDFIVEYINSDVLGL---- 968
Query: 775 RFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIK 834
+ D+ LT+ D+S E + L + A+D P K+G
Sbjct: 969 -----------------LSDKHLTIADQSRE--GTFDHRCMLLAELCSQAVDYP-KNGKP 1008
Query: 835 VEV---PEDLKVEKFPCYMRRD-----ESVSFESTSVLGTIYNTVK 872
V++ P L K P + + + E+ +ES LG ++ ++
Sbjct: 1009 VDISDLPRSLSRFK-PDWHQAEVSGPRENDYYESDRALGHLFRNIE 1053
>gi|401882100|gb|EJT46373.1| RNA-directed RNA polymerase [Trichosporon asahii var. asahii CBS
2479]
Length = 1106
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 109/445 (24%), Positives = 178/445 (40%), Gaps = 85/445 (19%)
Query: 470 PPLLMQVRLFYNGTAVKGTLLLNKKLPPQT----IQIRPSMIKVKADRDLSDGQTFNSLE 525
PP +Q+RL KG L L + + + +RPSMIK K+ SD + +L+
Sbjct: 471 PPCSVQMRL----GGSKGVLSLMSREQEEEYEADVILRPSMIKSKSAAGFSDDPSVLTLD 526
Query: 526 VVKTSNQPRKTYLSRNLIALLSYGGVP--------EIFFLDILRNAL---------DDAR 568
V+K LS I ++ GVP E+ F I N L DD R
Sbjct: 527 VLKVDGLKVGCNLSSEAIIIMEDRGVPPDVLIAKAELEFEKIRENLLPVPHPGENEDDVR 586
Query: 569 -----------GVFSNKRN----ALKVSFNYGGMDYDFTS-------ARMILSGISLDEP 606
GV S + L S G+ + T + +G DE
Sbjct: 587 QRLLHAVYTLGGVGSEREKRRCRQLGKSTKVAGLSLESTQQDEHEEDTSVAENGFLPDES 646
Query: 607 -YLQHRLSILMKE-EKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEK 664
++ +L +++ +++ KLPV +S + D G+LK NE+ I + +
Sbjct: 647 VWMSQKLKFMVRSLTDRAVSDFKLPVDQSLSALIVPDTLGVLKPNEIYIAPSSATLVNPR 706
Query: 665 -----------VLVYRNPGLHFGDIHVLKATY---VKELEDFVGTSKYAIFFPCNGPRSL 710
VL++R+P D+ ++A Y +K L+D + S + C S
Sbjct: 707 TMRPMSCVEGDVLIFRSPCKLPTDVRKMRAVYHSKLKHLQDCIVMSADSAM--CTA--SP 762
Query: 711 ADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSA---NKR---LIDF-----S 759
A +AGGD+DGD V + +L+K F+ + K A NK +IDF
Sbjct: 763 ASLLAGGDYDGDTATVIWDEDLVKPFRNAPEPDLDEKKFQAENFNKEVVAVIDFLHAVRG 822
Query: 760 LEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLIN 819
+ E ++ +N + L Q + R+ + D + +RL N
Sbjct: 823 RSHGKEEEARMIINLQHF-----LLGGIMDQQLTGRYSAMHDYAVYTLGPSHPVTVRLAN 877
Query: 820 IYYDALDAPKKSGIKVEVPEDLKVE 844
++ LD+ +KSG+ V+ PE LK +
Sbjct: 878 MFCLVLDS-RKSGLTVK-PEVLKAD 900
>gi|324500457|gb|ADY40216.1| RNA-dependent RNA polymerase RRF-3 [Ascaris suum]
gi|333440982|gb|AEF32766.1| RdRP3 [Ascaris suum]
Length = 1640
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 113/472 (23%), Positives = 185/472 (39%), Gaps = 75/472 (15%)
Query: 456 NFSDVA-RTESHYGE----------PPLLMQVRLFYNGTAVKGTLLLNKKLP---PQTIQ 501
NFSD A R + Y PP QVR KG L ++ L + +
Sbjct: 744 NFSDGAGRISAKYASLVAAKLDLRPPPSCFQVRF----KGFKGVLCVDPSLDLENKENVV 799
Query: 502 IRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLD--- 558
R S K + D + LEVVK S P LSR LI +L + L
Sbjct: 800 FRRSQKKFEEDESEA-----AELEVVKHS-MPSFVCLSRPLIMILDQVSERQNRELHQRL 853
Query: 559 ------ILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISL-DEPYLQHR 611
+L L+ + ++ A + + + DF ++ SG + +EP+ +
Sbjct: 854 CWRIHCLLEKELNTLAEMLLDEEVAAEALSSRLSLSIDFR--QLHDSGFTFTNEPFFRSL 911
Query: 612 L-SILMKEEKKSLQAGK--LPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEK---- 664
L ++ K+ L K LP + + G +D TG+L+ +V + + K
Sbjct: 912 LVAVHHYNIKQHLSKLKIFLPGSMGRTMYGVIDDTGVLQYGQVFVQYSPSVRTPSKKVIT 971
Query: 665 ----VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFD 720
VLV +NP L GD+ + A Y L + I FP GPR DE+AG D D
Sbjct: 972 HVGPVLVTKNPCLVGGDVRMFTAVYQSSLSHL----RDVIVFPRYGPRPHTDEMAGSDLD 1027
Query: 721 GDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSN 780
GD Y V + +L +E M K +++ D+ ++ FL
Sbjct: 1028 GDEYIVIFDKDLF--LDHNEEAMHFPKPVAS-----DYDTPPTAEDMIDFFL-------- 1072
Query: 781 AKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPED 840
K L+ D + + L + D + + + R +I A+D PK +
Sbjct: 1073 -KYLSQDSIGRMSNAHLIMSDRLGLFH-EICDGIARKCSI---AVDFPKSGEPAEPLSSF 1127
Query: 841 LKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCFDD 892
+ + P +M++ S+ S ++G +Y VK E ++ E+ ++ F D
Sbjct: 1128 EQSDIVPDFMQKSFRPSYRSHRLVGRLYRKVKKVE----NIVELAQMIPFTD 1175
>gi|308476844|ref|XP_003100637.1| hypothetical protein CRE_20435 [Caenorhabditis remanei]
gi|308264655|gb|EFP08608.1| hypothetical protein CRE_20435 [Caenorhabditis remanei]
Length = 1685
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 110/261 (42%), Gaps = 45/261 (17%)
Query: 502 IRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILR 561
RPS IK + R D +E+VK S+ P L++ I +L V E+ L+ R
Sbjct: 799 FRPSQIKFISKRHPRD-----QVEIVKYSS-PVPVALNKPFINILD--QVSEMQSLECHR 850
Query: 562 NA-------LDDARGVFSNK-------RNALKVSFNYGGMDYDFTSARMILSGISLDEPY 607
LD F+ + RN LK +DY TS LS EP+
Sbjct: 851 RVTNRIEELLDRQMLSFAQQMVDETFCRNRLKELPRRIDIDYLRTSWGFTLSS----EPF 906
Query: 608 LQHRLSILMKEE-KKSLQAGKLPVTESY--YLMGTVDPTGILKSNEVCIILKDG------ 658
+ + +K + L+ ++P+ ++G VD TG L+ ++ +
Sbjct: 907 FRSLIKASIKFSITRQLRKEQIPIPSELGRSMLGVVDETGRLQYGQIFVQYTKNLALKLP 966
Query: 659 ------QVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLAD 712
+V VL+ +NP + GD+ V +A + EL + FP +GPR D
Sbjct: 967 PKNAAREVLTGTVLLTKNPCIVAGDVRVFEAVDIPELHHMCD----VVVFPQHGPRPHPD 1022
Query: 713 EIAGGDFDGDMYFVSRNPELL 733
E+AG D DGD Y + + +LL
Sbjct: 1023 EMAGSDLDGDEYSIIWDQQLL 1043
>gi|440464051|gb|ELQ33552.1| RNA-dependent RNA polymerase [Magnaporthe oryzae Y34]
gi|440477644|gb|ELQ58660.1| RNA-dependent RNA polymerase [Magnaporthe oryzae P131]
Length = 1738
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 81/157 (51%), Gaps = 15/157 (9%)
Query: 594 ARMILSGIS-LDEPYLQHRLSILMKEEKKSLQAG-KLPVTESYYLMGTVDPTGILKSNEV 651
A M+ +G + + YLQ + K++ ++L+ + V S Y + VD G++ EV
Sbjct: 755 AEMVRAGFNPRGQKYLQDIAWNIQKQKCETLREKLNIKVGMSTYALMVVDFWGVVPEGEV 814
Query: 652 ---------CIILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFF 702
C ++ ++VLV R+P + DI +KA + EL+D K I F
Sbjct: 815 HLCFSEKFTCDGFSGTLLNDQEVLVARSPAHYVSDIQKVKAVFRPELKDL----KDVIVF 870
Query: 703 PCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKES 739
NG +LAD ++GGD+DGD+ +V + +++ +F+ +
Sbjct: 871 SRNGNVALADRLSGGDYDGDIAWVCWDSKIVDNFQNA 907
>gi|405121923|gb|AFR96691.1| hypothetical protein CNAG_03466 [Cryptococcus neoformans var.
grubii H99]
Length = 1120
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 95/387 (24%), Positives = 168/387 (43%), Gaps = 55/387 (14%)
Query: 500 IQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDI 559
I++RPSMIK ++ DL+D N + + K + +L+R I ++ GVP + I
Sbjct: 585 IRLRPSMIKFRS--DLAD---LNVIRIAKY----QAAFLNRQFINIMCANGVPHELIIGI 635
Query: 560 LRNALDDARGVFSNKRNALKVSFN---YGGMDYDFTSARMILSGISLDEPYLQHRLSILM 616
+A+ D +G F ++ V+ N + DF A++I SG + + P L +I+
Sbjct: 636 FEDAIADIKG-FKDRVWNNAVTENDQQLIALCNDFPLAQLIRSGFN-ENPLLLDVAAII- 692
Query: 617 KEEKKSLQ----AGKLPVTESYYLMGTVDPTGILKSNEVCIILKDG-----QVSWEKVLV 667
E ++LQ ++ +++ YL+G D TG LK EV ++ +V +VLV
Sbjct: 693 --ECRALQDLKWRARVKLSDGVYLIGIADETGTLKEGEVFCQFQENDDSPPKVVVNEVLV 750
Query: 668 YRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVS 727
R P D+ A EL K I F G R + + GGD DGD Y +
Sbjct: 751 CRAPAC---DVRRAWAVDRPELRHL----KNVIVFSTQGMRDMPSMLGGGDLDGDDYTLI 803
Query: 728 RNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAAD 787
+ ++ K + + + + K + + + L + LN + +
Sbjct: 804 WDQRFVQSLKVYDPMDYEAPDPISVKHV---TQKHLNENFVQYVLN------DVLGQVDN 854
Query: 788 CWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFP 847
C A+ D + L L I+ A+D K+G + L+ +++P
Sbjct: 855 CHLALSDMY-----------TPFDPRCLHLSEIHSTAVDF-AKTGQAAALDPSLRPKEWP 902
Query: 848 CYMRRDE-SVSFESTSVLGTIYNTVKS 873
+M +D+ V +ES +LG I+ V++
Sbjct: 903 DFMDKDDVKVVYESKGILGKIFRIVQA 929
>gi|392597023|gb|EIW86345.1| RdRP-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 1223
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 123/295 (41%), Gaps = 37/295 (12%)
Query: 438 CTNDDSTERSID-RKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLP 496
C D + SI+ +E+ + + R PP Q RL KG ++ N L
Sbjct: 598 CMTDGCSSISIELAREIWTSLNRTRRRTFPLKFPPSAFQFRL----GGAKGVVVQNPDLN 653
Query: 497 PQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIF- 555
+ + +R S K +A L+ +V + +PR +L+R LIA+L + G +
Sbjct: 654 DRVVCLRKSQRKFEAPNVLT-------FDVQSHTARPRPMFLNRPLIAILEHLGEQDTMD 706
Query: 556 -FLDILRNALDDARGVFSNKRNALKVSFNYG-GMDYDFTSA--------RMILSGISLDE 605
L++ + +A+GV S+ R+A K+ +G G + TS M + D+
Sbjct: 707 RILELQHADIQEAQGVRSSFRDAAKMLQVHGLGASFHLTSLFGNLAKELNMRVWTRESDD 766
Query: 606 PYLQH----RLSILMKEEKKSLQ-AGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQV 660
+ L + + L+ + V SY LMG D L+ E+ ++D +
Sbjct: 767 GWQNEVVIDALRCISTHALRELKYRAHIRVPGSYTLMGVSDEWNCLRPGEIFATVRDIRN 826
Query: 661 SWEK-----VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSL 710
+K V V R+P +H GDI V+ A ELE + F G R+L
Sbjct: 827 GLDKPIVGRVAVTRSPQIHPGDIQVVTAVRRPELEHLTNV----VVFSTQGDRAL 877
>gi|402074256|gb|EJT69785.1| RNA-dependent RNA polymerase [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1442
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 74/143 (51%), Gaps = 14/143 (9%)
Query: 607 YLQHRLSILMKEEKKSLQAG-KLPVTESYYLMGTVDPTGILKSNEV--CIILK------- 656
YLQ +L K++ ++L+ + V +S Y VD G L+ +EV C K
Sbjct: 915 YLQDLAWVLQKKKCETLKEKLNITVGKSAYAYMVVDFGGHLEPDEVHMCFSSKFQVDDFA 974
Query: 657 DGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAG 716
D + ++LV R+P + DI +KA + L+D K I FP G +LAD+++G
Sbjct: 975 DTLLDGIELLVARSPAHYISDIQKVKAVFKPALKDL----KDVIVFPRKGRVALADKLSG 1030
Query: 717 GDFDGDMYFVSRNPELLKHFKES 739
GD+DGD +V + ++K+F S
Sbjct: 1031 GDYDGDKAWVCWDQAIVKNFVNS 1053
>gi|402468934|gb|EJW04010.1| hypothetical protein EDEG_01704 [Edhazardia aedis USNM 41457]
Length = 2457
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 109/257 (42%), Gaps = 49/257 (19%)
Query: 656 KDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIA 715
+D + + ++V +NP LH GD+ + +A Y KELE I F G R L + +
Sbjct: 32 RDTNILFGSIVVAKNPCLHPGDVRIAEAVYKKELEHLQD----VIVFSGKGSRPLFNMCS 87
Query: 716 GGDFDGDMYFVSRNPELL-KHFKESERWMSTS---KNLSANKRLIDFSLEELESELFKLF 771
G D DGD Y V + L+ + + + +T+ K + +I+F +
Sbjct: 88 GSDLDGDQYAVIWDKRLIPTKTVDPDTYDNTTILMKEMVTLNDVINFYV----------- 136
Query: 772 LNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKS 831
R+ + L A A DR + M + + L ++ +D P K+
Sbjct: 137 ---RYMKEDELGLIATAHLATSDRL-----------SIMDKECITLAKLFNKGVDFP-KT 181
Query: 832 GIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAV-------DRSVTEI 884
G +P+DL +P +M+++ ++S +LG +Y K +V SV+E
Sbjct: 182 GYVARLPDDLLPSSYPDFMQQNS--QYKSDKILGKMYRRCKILSSVKYPRCVCKASVSEY 239
Query: 885 WK----LPCF--DDGVP 895
++ L CF DD V
Sbjct: 240 FRYFIDLKCFRRDDDVS 256
>gi|392597024|gb|EIW86346.1| RdRP-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 1218
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/321 (25%), Positives = 131/321 (40%), Gaps = 62/321 (19%)
Query: 413 IHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPL 472
+ TDG IS DLA ++++ T DR++L S PP
Sbjct: 591 VMTDGCSSISPDLARN----IWEKLRT---------DRRQL-----------SSLKNPPS 626
Query: 473 LMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQ 532
Q RL KG ++ N L + + +RPS +K + TF+ V++ ++
Sbjct: 627 AFQFRL----GGAKGVVVQNPDLEGKVVCLRPSQLKFEGSE-----LTFD----VQSHSR 673
Query: 533 PRKTYLSRNLIALLSYGGVPEIF--FLDILRNALDDARGVFSNKRNA--------LKVSF 582
R YL+R LIALL + + L + + + +A+GV S+ ++A L F
Sbjct: 674 SRPMYLNRPLIALLEHVAASGLVTRVLKLQHDDIMEAQGVRSSFKDASKMLEVHGLGAPF 733
Query: 583 NYGGMDYDFTSARMILSGISLDEPYLQHRLSI-----LMKEEKKSLQ-AGKLPVTESYYL 636
G + ++ +S + S L++ + I + + L+ + V SY L
Sbjct: 734 RLGSLFHNLSSELNLHVWTSETPRGLRNEIIIDAMRCISTHALRELKYRAHIRVPGSYTL 793
Query: 637 MGTVDPTGILKSNEVCIILKDGQVSW-----EKVLVYRNPGLHFGDIHVLKATYVKELED 691
MG D L E+ ++D + V V R+P +H GDI V+KA ELE
Sbjct: 794 MGVSDEWDCLNPGEIFATVRDYRTGVYHAIEGPVAVTRSPQIHPGDIQVVKAVRRPELEH 853
Query: 692 FVGTSKYAIFFPCNGPRSLAD 712
I F G R L +
Sbjct: 854 LTNV----IVFSTRGDRPLPN 870
>gi|189208947|ref|XP_001940806.1| RNA-directed RNA polymerase 2 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976899|gb|EDU43525.1| RNA-directed RNA polymerase 2 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 1436
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 112/275 (40%), Gaps = 47/275 (17%)
Query: 500 IQIRPSMIKVKADRD-LSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLD 558
I I S K D L D + + E+ S+ P + L + I +L VP
Sbjct: 819 IMINASQWKFNPPEDALLDHEHHRTFELSNYSSSPTPSELHISFIPILVDRKVPLTVIDS 878
Query: 559 ILRNALDDARGVFSN------------KRNALKVSFNYGGMDYDFTSA---------RMI 597
+++++L+ R + RN K G D + +A +++
Sbjct: 879 LMKDSLEAERTKLLDLLPDPVKMYDWVHRNGTKTQ---SGNDVPWQAAMPVSLEEKVKLL 935
Query: 598 L-SGISLD--EPYLQHRLSILMKEEKKSLQAGKL--PVTESYYLMGTVDPTGILKSNEVC 652
L SG S +P Q + + K+ LQ KL P+ +S +L G VDP +L+ ++
Sbjct: 936 LESGFSPAKFQPLAQSLQRFI--QAKQILQESKLRVPLAKSTFLFGIVDPFEVLEPGQIQ 993
Query: 653 IILKDG---QVSWEK--------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIF 701
+ + EK VLV R P DI ++ EL V +
Sbjct: 994 VQFSSSFADDTTDEKYLGLRDMEVLVARQPACRRSDIQKVRTVIRPELSHLVDV----VV 1049
Query: 702 FPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHF 736
FP G LA ++ GGD+DGD++++ P+L+ F
Sbjct: 1050 FPSRGRYPLAGKLQGGDYDGDIFWICWEPQLVLPF 1084
>gi|392587026|gb|EIW76361.1| RdRP-domain-containing protein, partial [Coniophora puteana
RWD-64-598 SS2]
Length = 935
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 102/473 (21%), Positives = 184/473 (38%), Gaps = 77/473 (16%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P QVR +KG +++ +L + + RPSM K + D + +E+V+
Sbjct: 351 PDAFQVRC----AGLKGVFVVDHQLEGKIMCPRPSMKKFLPLDESEDAE----IEIVRAF 402
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYG-GMDY 589
++P +++L+R L+ +L GV FL++ +A+ DAR + + V + G+ Y
Sbjct: 403 DKPGRSFLNRPLVMVLEDRGVKTEGFLELFNDAVADARTAHDSVDQFVAVLQKHRLGIPY 462
Query: 590 DFTSARMILSGI-----------SLDEPYLQH-RLSILMKEEKKSLQAGKLPVTESYYLM 637
+ L + SLD +L RL ++ + + ++P+ SY L+
Sbjct: 463 RLDQTLLKLKALGLVLRTGQDQESLDTDFLARVRLCVIKHILRDIRHSARIPIPGSYQLV 522
Query: 638 GTVDPTG--ILKSNEVCIILKDGQV------------SWEK--VLVYRNPGLHFGDIHVL 681
G D I E L+ GQ+ W + ++ R+P +H GD+ +
Sbjct: 523 GVADEGQAYINAGKENVFTLRQGQIYACIQDPSDAEPQWLQGTCVISRSPVVHPGDVQRV 582
Query: 682 KATYVKELEDFVGTS--KYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKES 739
A + K + F G LA+ + GGD F++ + ++
Sbjct: 583 YAIGKPPENQLCAFARLKNVVVFASRGTLPLANCL-GGDGHVTRLFITEQVDPTEYDARE 641
Query: 740 ERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTL 799
+ L + DF +E + S++ L +T ++A S +DR
Sbjct: 642 PYTLDRPVTLDD---ICDFVVEYIHSDVVGLVADTHIIIADASS------DGTLDR---- 688
Query: 800 GDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEV---PEDLKVEKFPCYMRRDESV 856
L L ++ A+D K+GI V++ P L K + DES
Sbjct: 689 -------------RCLELAKMHSQAVDY-LKNGIPVDIRRMPRRLIPFKPDWHEAEDESS 734
Query: 857 S----FESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCFDDGVPEACMTKWKGY 905
+ S LG +Y T K E DR ++ + D + + + GY
Sbjct: 735 HPCDYYRSNRALGHMYRT-KLDE--DRETLAHVEVDSYGDSISQVVQQRVNGY 784
>gi|407036402|gb|EKE38145.1| RNA-directed RNA polymerase, putative [Entamoeba nuttalli P19]
Length = 1026
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 122/290 (42%), Gaps = 52/290 (17%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P Q+R VKG L +++ + I RPS IK++A +T L V++
Sbjct: 456 PYAFQIRF----AGVKGVLTVDRLDMTENIYFRPSQIKIEAL-----PKTIQKLRVIQIP 506
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYD 590
Q R ++ L L Y +P F+ + L V N R + + +
Sbjct: 507 -QFRSGRMNEQLALGLEYLQIPPSNFISSAKQYLKKYFSVTPN-REIISLFQRFTNNPVI 564
Query: 591 FTSARMILSGIS----LDEPYLQH-----RLSILMKEEKKSLQAGKLPVTESYYLMGTVD 641
+ ++I++ +EP+++ R+S+L EK K + S +LMG +D
Sbjct: 565 EVALKIIMASNGNQKIYEEPFIRATSLVLRMSLL--SEKTDFI--KFDIDNSAFLMGVMD 620
Query: 642 PTGILKSNEVCIILKDGQVSW--EKVLVYRNPGLHFGDIHVL----------------KA 683
+G+L+ EV I + V+ ++LV + P H GD +L +
Sbjct: 621 ESGLLEEGEVFIQVTTPTVTIPSSRLLVVKFPATHPGDFVLLNNVVDKINSEKKKGFERL 680
Query: 684 TYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
TY++++ I F G R ++++GGD DGD Y + NP L
Sbjct: 681 TYLRDV----------IVFSSKGNRPDPNKLSGGDLDGDEYLIIWNPLFL 720
>gi|326475512|gb|EGD99521.1| hypothetical protein TESG_06788 [Trichophyton tonsurans CBS 112818]
Length = 1298
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 99/245 (40%), Gaps = 38/245 (15%)
Query: 523 SLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRN----AL 578
+ +V S P+ +L+ + +L G + + L ++ D F +N A
Sbjct: 718 TFDVSSYSQPPQPVHLNTQFLMVLQDRGTNKEYILSLIPEEADKFYSEFLLVQNGDSAAC 777
Query: 579 KVSFNYGGMDYD----------FTSARMILSGISLDEPYLQHRLSI---LMKEE-----K 620
+ G D F +R + + LD +L L+ L KE
Sbjct: 778 RAWVRQNGGDASSQIPALNESTFPPSRTVQLNMFLDAGFLPSNLAFVRRLFKENFLGVFV 837
Query: 621 KSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEK---------VLVYRNP 671
+ L+A K+ + +S Y+ DP G+L+ ++ + L D SWE VLV R P
Sbjct: 838 QKLEALKIKIPKSTYVYCIPDPYGVLEEGQIHLDLGD---SWEDGTTDLDGIDVLVARAP 894
Query: 672 GLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPE 731
DI +A + L K FP G LA ++GGD+DGD +V + E
Sbjct: 895 AHLPSDIQKCRAVFHPALRYL----KNVAIFPTKGEVPLASLLSGGDYDGDEVWVCWDQE 950
Query: 732 LLKHF 736
++K F
Sbjct: 951 IVKPF 955
>gi|268561564|ref|XP_002646475.1| Hypothetical protein CBG19448 [Caenorhabditis briggsae]
Length = 1606
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 85/200 (42%), Gaps = 49/200 (24%)
Query: 587 MDYDFTSARMILSGISLD-EPYLQH------RLSILMKEEKKSLQAGKLPVTESYYLMGT 639
+D DF + G +L EP+ + + SI + K+ +Q +P ++G
Sbjct: 808 IDIDFLRP---MWGFTLSSEPFFRSLIKASIKFSITKQLRKEQIQ---IPKELGRSMLGV 861
Query: 640 VDPTGILKSNEVCI-----------------ILKDGQVSWEKVLVYRNPGLHFGDIHVLK 682
VD TG L+ ++ + + D ++ VLV +NP + GD+ V +
Sbjct: 862 VDETGQLQYGQIFVQYTQNAAKKLPMRGPNMTVPDAKIVTGTVLVTKNPCIVTGDVRVFE 921
Query: 683 ATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERW 742
A + EL + FP +GPR DE+AG D DGD Y + + +LL
Sbjct: 922 AVDIPELHHMCDV----VVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLL--------- 968
Query: 743 MSTSKNLSANKRLIDFSLEE 762
L N+ DFS+E+
Sbjct: 969 ------LDRNEDPFDFSVEK 982
>gi|308476834|ref|XP_003100632.1| CRE-RRF-1 protein [Caenorhabditis remanei]
gi|308264650|gb|EFP08603.1| CRE-RRF-1 protein [Caenorhabditis remanei]
Length = 1680
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 92/211 (43%), Gaps = 37/211 (17%)
Query: 587 MDYDFTSARMILSGISL-DEPYLQH------RLSILMKEEKKSLQAGKLPVTESYYLMGT 639
+D DF + G +L +EP+ + + SI + K+ +Q +P ++G
Sbjct: 860 IDIDFLKR---MWGFTLCNEPFFRSLIKASIKFSITKQLRKEQIQ---IPKELGRSMLGI 913
Query: 640 VDPTGIL-------------------KSNEVCIILKDGQVSWEKVLVYRNPGLHFGDIHV 680
VD TG L +SN + ++ QV VL+ +NP + GD+ +
Sbjct: 914 VDETGRLQYGQIFVQYTRNSNEKLPPRSNMQHMKVQGSQVVTGTVLLTKNPCIVTGDVRI 973
Query: 681 LKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESE 740
+A + EL + FP +GPR DE+AG D DGD Y V + +LL E+
Sbjct: 974 FEAVDIPELHHLCD----VVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQQLLLDKNEAP 1029
Query: 741 -RWMSTSKNLSANKRLIDFSLEELESELFKL 770
+ K + ++ +ID + E + KL
Sbjct: 1030 FDFTVEKKEMPYDREMIDQLMHEFYVKYLKL 1060
>gi|397614211|gb|EJK62661.1| hypothetical protein THAOC_16717 [Thalassiosira oceanica]
Length = 540
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 117/252 (46%), Gaps = 26/252 (10%)
Query: 633 SYYLMGTVDPTGILKSNEVCIIL-----KDGQVSWE----KVLVYRNPGLHFGDIHVLKA 683
S LMG +D TG+L+ N++ I + ++ + ++E +V+V ++P +H GD+ +L+A
Sbjct: 9 SEVLMGGIDETGLLEENQIFIQVSKHTKENNKPAYEVITGRVMVAKHPVIHPGDLRMLEA 68
Query: 684 TYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWM 743
+ EL K + F +G R + + ++G D DGD + + + L ++ M
Sbjct: 69 VDLPELRGV----KNVVLFSQHGHRPVTNMMSGSDLDGDEFAICWDRRLF--LPKTVEAM 122
Query: 744 STSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDES 803
S + L+ S+ E E F + N D + +L D +
Sbjct: 123 SYDSHSPDETGLLPLSVLE---EEFGVTTNEALVRHFINHAKNDNLGKISMLWL---DHA 176
Query: 804 AEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKV-EKFPCYMRRDE---SVSFE 859
++ +A L L ++ ++D PK S I ++P+ L + FP R++ S SF
Sbjct: 177 IDKGSASCSECLELAALHSISVDFPKSS-IPAKLPDRLVLGSTFPRAHWREKAGGSPSFH 235
Query: 860 STSVLGTIYNTV 871
S++G +Y+ V
Sbjct: 236 CRSIVGRLYDNV 247
>gi|409045817|gb|EKM55297.1| hypothetical protein PHACADRAFT_173398 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1215
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 161/777 (20%), Positives = 301/777 (38%), Gaps = 154/777 (19%)
Query: 179 TADEIRGMRDLQMARFESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTF 238
A+ +R + R E E + K S+E+ +++ SG +H I T
Sbjct: 365 AAETLRAFTEAMRGRDPRESPEDIFEKVWSREEPE-AVELSSGNFMCHHVTI-TPTRMLL 422
Query: 239 KGPYLNQTRTHLQRELG-DDNILLVKF-DEELGGHRSSNNWNDSYSKYNEIA---REGIL 293
+GPY+ Q+ +++ G +D+ + + F DE+ +R + + N + + G
Sbjct: 423 EGPYVIQSNRVIRQYRGYEDHFIRIDFRDEDRLQYRWDRDTDGKSLLENRVGGLLKGGFS 482
Query: 294 VGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYM 353
+ R + F + +R + F++ Y K +A Y+
Sbjct: 483 LATRKFEFLAYSSSA-----------------LREHAVWFVNPFYH---QEKGWIDAEYI 522
Query: 354 FMHVRTVSSVAN----YMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDG 409
+ S+V N Y +R++ + T V+ +R E+++D
Sbjct: 523 RSSLGDFSAVINCPSKYAARIAQAFTAT-DPSVEITRDQWEQMDD------------LGE 569
Query: 410 EALIHTDGTGFISEDLALKCPTYVYKEKCT-NDDSTERSIDRKELEANFSDVARTESHYG 468
E + TDG G IS +L +++ C+ DDS ++I
Sbjct: 570 EPYLFTDGVGTISSELG----DMIWEALCSARDDSYRKNIK------------------- 606
Query: 469 EPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVK 528
P Q+R KG + ++ +L +++RPSM K + + ++E+ +
Sbjct: 607 --PSAYQIRFL----GYKGMVAVDGRLKGVKMRLRPSMNKFEG-----PAEETATIEIAR 655
Query: 529 TSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYG--G 586
+P YL+R LI +L GV + FL+ L+ A A + S+ + F G
Sbjct: 656 AFERPNTCYLNRPLIMVLEDRGVIKQAFLE-LQEAAVAAIHMSSDSVMQCRQLFREHSLG 714
Query: 587 MDYDFTSARMILSGIS------------LDEPYLQHRLSILMKEEKKSLQA-GKLPVTES 633
Y + +L+ + L +P+ + + + +S++ ++PV S
Sbjct: 715 GSYRLSYVWQLLNAVGLGMEHEENIRVVLQDPFFERLVQFAKNDVLRSIKHNARIPVLGS 774
Query: 634 YYLMGTVD--PTGILKSNEVCIILKDGQVS------------W--EKVLVYRNPGLHFGD 677
Y L+G D P + E L++GQ+ W V + R+P +H GD
Sbjct: 775 YLLVGVADEGPAYEAEGCENVFKLEEGQIYACVQKSVDEELIWIEGSVTISRSPVVHPGD 834
Query: 678 IHVLKATYVKELED-----FVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPEL 732
+ + T + + D F K + P G RSLA + GGD DGD+Y + L
Sbjct: 835 VQ--RVTAIGKPPDDGRPCFFRNLKNVVVLPSTGGRSLASMLGGGDLDGDLYSIIWESTL 892
Query: 733 L--KHFKESERWMSTSKNLSANKR---LIDFSLEELESELFKLFLNTRFCPSNAKSLAAD 787
L +H ++ + L R + DF +E ++S++ L
Sbjct: 893 LPTEHQGPAKYEPVGKRELDRPSRIEDICDFIIEYIDSDVLGL----------------- 935
Query: 788 CWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLK--VEK 845
+ DR L + E E K +RL + A+D P K+G+ V++ + +
Sbjct: 936 ----LSDRHLIIAGELREGTRDAK--CIRLAELCSQAVDYP-KNGVPVDIQNSPRWLIPY 988
Query: 846 FPCYMRRDESVS-----FESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCFDDGVPEA 897
P + + +++ +ES LG ++ V+ E +LP D + +A
Sbjct: 989 KPDWKKAEDNAPRKTDYYESDRALGDLFRNVQLLEPPKTVHLPSKRLPPLSDSISQA 1045
>gi|358369575|dbj|GAA86189.1| RNA-directed RNA polymerase [Aspergillus kawachii IFO 4308]
Length = 1306
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 119/286 (41%), Gaps = 54/286 (18%)
Query: 500 IQIRPSMIKVKADRDLSDGQTFN---SLEVVKTSNQPRKTYLSRNLIALLSYGG------ 550
IQI S +K++ DG + + EVVK S + L+ +L +GG
Sbjct: 684 IQISDSQLKIRPHPHEWDGSVDDEKLTFEVVKWSKPLHPVNQTIQLLNILDHGGHIRGHL 743
Query: 551 -------VPEIF--FLDIL---------------RNALDDARGVFSNKRNALKVSFNYGG 586
+ ++ F D+L R + DD G S + + N+
Sbjct: 744 ADLTRLGIQSLYQEFADVLESDSAVLCRSLVQKIRPSGDDGFGRVSQRTWRFE---NWMS 800
Query: 587 MDYDFTSARMILSGISLDE-PYLQHRLSILMKEE-KKSLQAGKLPVTESYYLMGTVDPTG 644
D +F R+ +G +L+ RL ++E K+ + ++ V S Y DP G
Sbjct: 801 NDAEFI-IRLTEAGFCPRSFHFLRKRLGKCLRELLKRHVDELRIEVPLSTYAFCIADPYG 859
Query: 645 ILKSNEVCI----ILKDGQVSWEK-------VLVYRNPGLHFGDIHVLKATYVKELEDFV 693
+LK +EV + +DG+ +E VLV R P DI A + +EL F
Sbjct: 860 VLKEDEVHFGFSNVWRDGKGQFEDILLDGIDVLVGRLPAHLPSDIQRRTAVWKQELRHF- 918
Query: 694 GTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKES 739
K I FP G LA ++GGD+DGD ++ + ++++F S
Sbjct: 919 ---KDVIVFPSVGNIPLAHMLSGGDYDGDTPWICWDQNIVRNFYNS 961
>gi|299753212|ref|XP_002911846.1| calcium:hydrogen antiporter [Coprinopsis cinerea okayama7#130]
gi|298410195|gb|EFI28352.1| calcium:hydrogen antiporter [Coprinopsis cinerea okayama7#130]
Length = 1681
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 111/463 (23%), Positives = 181/463 (39%), Gaps = 105/463 (22%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLP--PQTIQ--IRPSMIKVK-----ADRDLSDGQTF 521
P Q+R KG + ++K+L P IQ +RPSM K + D ++ Q+F
Sbjct: 1080 PDAFQIRFL----GYKGMVSVDKELDNHPHGIQMRLRPSMRKFENKGEEEDAEIEIAQSF 1135
Query: 522 NSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVS 581
+S P YL+R L+ LL G + FL + + DA + + K
Sbjct: 1136 SS---------PNAAYLNRPLVMLLEDLGARKEDFLRLQNLEIADACTIDESLEQFQKFM 1186
Query: 582 FNYG-----GMDY----------DFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQ-A 625
+G G Y D +S + G S+D P+L S+ + + + ++ +
Sbjct: 1187 SGHGLGRPFGFQYLLRKLWNLGLDLSSNK---KGSSIDTPFLHLLRSVAINDVLRDIKHS 1243
Query: 626 GKLPVTESYYLMGTVD--PTGILKSNEVCIILKDGQVS--------------WEKVLVYR 669
++ + +SY L+G D P + + L++G + V + R
Sbjct: 1244 ARIKIPDSYLLVGIADEGPAYEKRGYKNVYSLREGNIYACIQRHEDDEPTYIQGTVSISR 1303
Query: 670 NPGLHFGDIHVLKATYVKELEDFVGTS--KYAIFFPCNGPRSLADEIAGGDFDGDMYFVS 727
+P H GD+ + A F + + P G RSLA + GGD DGDM+ V
Sbjct: 1304 SPVAHRGDVQRVYAIGEPPAGMFCAFRGLRNVVVLPSVGDRSLASCLGGGDVDGDMFSVI 1363
Query: 728 RNPELL--KHFKESERWMSTSKNL---SANKRLIDFSLEELESELFKLFLNTRFCPSNAK 782
LL + F+ S + +K L S + + DF +E + S++ L
Sbjct: 1364 TCDALLPSETFEPSAYESAGTKTLDRDSTVEDICDFVVEYINSDVLGL------------ 1411
Query: 783 SLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLK 842
+ DR L + D+S + E L L + A+D PK+ +P DL
Sbjct: 1412 ---------LSDRLLIIADQSKD--GFSDEACLALAELCSQAVDYPKQG-----IPVDLD 1455
Query: 843 VEKFPCYMRR-------DESVS------FESTSVLGTIYNTVK 872
P + R E VS + ST LG +Y V+
Sbjct: 1456 SNDLPRTLIRCKPDWHAAEVVSPRETDYYRSTRALGFLYRAVE 1498
>gi|222629015|gb|EEE61147.1| hypothetical protein OsJ_15104 [Oryza sativa Japonica Group]
Length = 335
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 25/178 (14%)
Query: 700 IFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANK-RLID- 757
+ FP G R +E +GGD DGD+YF++ + +L+ + T + +A + R++D
Sbjct: 5 LVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIPEK------VDTPMDYTATRPRIMDH 58
Query: 758 -FSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLR 816
+LEE++ +N D A+ L D S + A L+
Sbjct: 59 VVTLEEIQKHFVDYMIN-------------DSLGAISTAHLIHADRSPLK--ARSPECLQ 103
Query: 817 LINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSY 874
L ++ A+D K+G E+P L+ ++P +M R E + S VLG +Y + +
Sbjct: 104 LATLHSMAVDF-AKTGAPAEMPRTLRPREYPDFMERWEKPMYISNGVLGKLYRSAMGH 160
>gi|443894414|dbj|GAC71762.1| RNA-directed RNA polymerase QDE-1 [Pseudozyma antarctica T-34]
Length = 1339
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 74/317 (23%), Positives = 112/317 (35%), Gaps = 76/317 (23%)
Query: 496 PPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIF 555
P + I IR S K++ RD + L+++ S + LS+ +I +L GVP
Sbjct: 610 PKRWIHIRKSQNKIEYPRDEPRDLSQQVLDLLTASRTTSPSSLSKQIILVLHSNGVPTET 669
Query: 556 FLDILRNALDDARGVFSN---------------------------KRNALKVSFNYGGM- 587
F + + L SN KR+ GM
Sbjct: 670 FAALQQAELRAITDSISNWEGPDLLVSKALAKVVDDLCQVEKLRAKRSTEAAEHRAQGMG 729
Query: 588 --------------DYDFTSARMILSGISLDEPYLQHRL------------------SIL 615
D+ F R I +G+ L +P H + I
Sbjct: 730 LSDSTQMDTVGDDRDFFFEKGRHIWNGMPLSKPERAHDMLKIGFHPRSCSYLAGFLVEIA 789
Query: 616 MKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEV-------CIILKDGQVSWEKV--- 665
KK Q + + S M DPTG L+ E+ I D +++ V
Sbjct: 790 DTAMKKVTQRFAVSIARSAEAMVIPDPTGTLEEGEIQFRFSGDSICDPDSRLALHHVPEG 849
Query: 666 --LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDM 723
LV R+P L DI ++A EL F + + F G LA ++GGD+DGD+
Sbjct: 850 DVLVTRHPCLLPTDIRKVRAVVRSELSRF----QDVVVFSTKGHTPLASLLSGGDYDGDL 905
Query: 724 YFVSRNPELLKHFKESE 740
V P L+ FK ++
Sbjct: 906 IRVFWEPRLVDPFKNAD 922
>gi|169598368|ref|XP_001792607.1| hypothetical protein SNOG_01986 [Phaeosphaeria nodorum SN15]
gi|111069078|gb|EAT90198.1| hypothetical protein SNOG_01986 [Phaeosphaeria nodorum SN15]
Length = 1428
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 106/252 (42%), Gaps = 47/252 (18%)
Query: 606 PYLQHRLSILMKEEKKSLQAG-KLPVTESYYLMGTVDPTGILKSNEVCIILKDG------ 658
P+L L +++ + ++ + P+ + YL+G DP GILK EV +
Sbjct: 938 PFLARTLKRFVQQRQLWMEEKLRAPLGRATYLIGLADPLGILKPGEVHVQFSKPFLDEYG 997
Query: 659 -----QVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADE 713
++ E+V++ R P D+ ++A +L V + F G A +
Sbjct: 998 RNTYRNLAGEEVVITRQPACRRSDMQKMRAVSHPQLSHLVDV----VVFSSRGIYPAAGK 1053
Query: 714 IAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLN 773
+ GGD+DGD ++V P+L+ F L+A L D LE + + + +
Sbjct: 1054 LQGGDYDGDTFWVCWEPDLVVPF------------LNAPAPLND-----LEPQKYGIKKD 1096
Query: 774 TR-----FCP---SNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENML--RLINIYYD 823
TR P S +L + + M + L + EK A KEN + +N YD
Sbjct: 1097 TRKLTDIMNPHDLSTVDNLLKEALEFRMTQSLLGKATTFAEKVAYKENRIYSERLNALYD 1156
Query: 824 A----LDAPKKS 831
+DAPK++
Sbjct: 1157 VHDLLVDAPKQA 1168
>gi|17506499|ref|NP_492132.1| Protein EGO-1 [Caenorhabditis elegans]
gi|8886068|gb|AAF80367.1| RNA-directed RNA polymerase related EGO-1 [Caenorhabditis elegans]
gi|14530420|emb|CAB01701.2| Protein EGO-1 [Caenorhabditis elegans]
Length = 1632
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 109/264 (41%), Gaps = 51/264 (19%)
Query: 502 IRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILR 561
RPS IK + R D +E+VK S+ P L++ I +L V E+ L+ R
Sbjct: 745 FRPSQIKFISKRHPRD-----QVEIVKYSS-PVPVALNKPFINILD--QVSEMQSLECHR 796
Query: 562 NA-------LDDARGVFSNK-------RNALKVSFNYGGMDYDFTSARMILSGISLDEPY 607
LD F+ + RN LK +DY T+ LS EP+
Sbjct: 797 RVTNRIEELLDRQMLSFAQQMVDETFCRNRLKELPRRVDIDYLRTTWGFTLSS----EPF 852
Query: 608 LQH------RLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDG--- 658
+ + SI + K+ + +P ++G VD TG L+ ++ +
Sbjct: 853 FRSLIKASIKFSITRQLRKEQI---PIPCDLGRSMLGVVDETGRLQYGQIFVQYTKNLAL 909
Query: 659 ---------QVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRS 709
QV VL+ +NP + GD+ + +A + EL + FP +GPR
Sbjct: 910 KLPPKNAARQVLTGTVLLTKNPCIVAGDVRIFEAVDIPELHHMCD----VVVFPQHGPRP 965
Query: 710 LADEIAGGDFDGDMYFVSRNPELL 733
DE+AG D DGD Y + + +LL
Sbjct: 966 HPDEMAGSDLDGDEYSIIWDQQLL 989
>gi|321261399|ref|XP_003195419.1| hypothetical protein CGB_G5150C [Cryptococcus gattii WM276]
gi|317461892|gb|ADV23632.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 1120
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 93/387 (24%), Positives = 168/387 (43%), Gaps = 55/387 (14%)
Query: 500 IQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDI 559
I++RPSMIK ++ DL+D N + + K + +L+R I ++ GVP + I
Sbjct: 585 IRLRPSMIKFRS--DLAD---LNVIRIAKY----QAAFLNRQFINIMCANGVPHELIIGI 635
Query: 560 LRNALDDARGVFSNKRNALKVSFN---YGGMDYDFTSARMILSGISLDEPYLQHRLSILM 616
+A+ D +G F ++ ++ N + DF A++I SG S + P + +I+
Sbjct: 636 FEDAIADIKG-FRDRVWNNAITENDEQLIALCNDFPLAQLIKSGFS-ENPLVLDVAAII- 692
Query: 617 KEEKKSLQ----AGKLPVTESYYLMGTVDPTGILKSNEVCIILKDG-----QVSWEKVLV 667
E ++LQ ++ +++ YL+G D TG LK E+ ++ +V +VLV
Sbjct: 693 --ECRALQDLKWRARVKLSDGVYLIGIADETGTLKEGEIFCQFQENDESPPKVVVNEVLV 750
Query: 668 YRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVS 727
R P D+ A EL K I F G R + + GGD DGD Y +
Sbjct: 751 CRAPAC---DVRRAWAVDRPELRHL----KNVIVFSTQGMRDMPSMLGGGDLDGDDYTLI 803
Query: 728 RNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAAD 787
+ ++ K + + + + K + + + L + LN + +
Sbjct: 804 WDQRFVQSLKVYDPMDYEAPDPISVKHV---TQKHLNENFVQYVLN------DVLGQVDN 854
Query: 788 CWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFP 847
C A+ D + L L I+ A+D K+G + L+ +++P
Sbjct: 855 CHLALSDMY-----------TPFDPRCLHLSEIHSTAVDF-AKTGQAAALDPSLRPKEWP 902
Query: 848 CYMRRDE-SVSFESTSVLGTIYNTVKS 873
+M +D+ V +ES +LG I+ V++
Sbjct: 903 DFMDKDDVKVVYESKGILGKIFRIVQA 929
>gi|406867650|gb|EKD20688.1| RNA-dependent RNA polymerase 1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 901
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 77/326 (23%), Positives = 134/326 (41%), Gaps = 67/326 (20%)
Query: 409 GEALIHTDGTGFISEDLALKCPTYVYKE--KCTNDDSTERSIDRKELEANFSDVARTESH 466
G L+ D TG + ++ P + +D + +ID + N D+ R+
Sbjct: 474 GSLLLDRDITGGLGNFTLIRSPAKCAARIGQAFSDTRSFMTID-PLIVRNMEDIKRSGYV 532
Query: 467 YGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEV 526
+ + + + L G KG + L+ +L + +R SMIK DG T N +E+
Sbjct: 533 FSDGCGTIALSLLCLGA--KGMISLDSRLDGDQLCLRDSMIKF-------DGSTSNDIEI 583
Query: 527 VKTSNQPRKTYLSRNLIALLSYG--GVPEIFFLDILRNALDDARGVFSNKRNALKVSFNY 584
+ +P Y++R I + +G EI L ++ + +A KR + SF +
Sbjct: 584 YDITYRPLPVYMNRKFIKI-DHGEPATKEITSLRMITESPINASSFL--KRQGVGDSFQF 640
Query: 585 GGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTG 644
P L RL +K E ++PV ++L G +D TG
Sbjct: 641 ---------------------PELILRLLRKLKHE------ARIPVPRGWHLHGIMDETG 673
Query: 645 ILKSNEV-CIILKDGQ---VSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAI 700
LK E+ C+ +++G ++ E++++ R P L GD+ + KA +
Sbjct: 674 SLKEGEIFCVGVEEGVKNVITSERLVITRAPALDPGDVRIAKA----------------V 717
Query: 701 FFPCNGPRSLADEIAGGDFDGDMYFV 726
P P E+ GGD DGD ++V
Sbjct: 718 MPPAESPLM---ELGGGDLDGDRFYV 740
>gi|341877528|gb|EGT33463.1| hypothetical protein CAEBREN_18731 [Caenorhabditis brenneri]
Length = 1708
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 18/157 (11%)
Query: 628 LPVTESYYLMGTVDPTGILKSNEVCIILKD-----------GQVSWEKVLVYRNPGLHFG 676
+P + G D TG+L+ +V + + G++ ++V + P + G
Sbjct: 847 IPSNVGRSMFGVTDETGLLQYGQVFVQYTENVNNKHPSGVSGKILKGPLMVTKFPSMCEG 906
Query: 677 DIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHF 736
D+ + +A + EL + I FP NGPRS+ DE+AG D DGD Y V +P L F
Sbjct: 907 DVRMYEAVDIPELRHL----ENVIVFPQNGPRSMPDEMAGSDLDGDEYAVIWDPFLF--F 960
Query: 737 KESERWMSTSKNLSANKRLIDFSLEELESELFKLFLN 773
+ +E + + K ID ++E + + F+N
Sbjct: 961 ERNETAFAYCNDKPEKKLNID-EMDEGMNVFYAEFMN 996
>gi|242790556|ref|XP_002481575.1| RNA-directed RNA polymerase, putative [Talaromyces stipitatus ATCC
10500]
gi|218718163|gb|EED17583.1| RNA-directed RNA polymerase, putative [Talaromyces stipitatus ATCC
10500]
Length = 1360
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 15/140 (10%)
Query: 608 LQHRLSILMKEE-KKSLQAGKLPVTESYYLMGTVDPTGILKSNEV----------CIILK 656
L+ RL I +++ + + +P+ S Y DP G+L+ NEV C
Sbjct: 861 LRERLRICLRDTLDRYVTQLHIPIPLSTYAYCIADPYGVLEENEVHFAFSGQWRDCAYFD 920
Query: 657 DGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAG 716
D V VLV R P DI +A + EL F K I F G LA ++G
Sbjct: 921 DAMVDGVDVLVGRTPAHCPWDIQRRRAVWKSELRHF----KDVIVFSTKGTTPLASLLSG 976
Query: 717 GDFDGDMYFVSRNPELLKHF 736
GD+DGD +V + +++ F
Sbjct: 977 GDYDGDRTWVCWDSGIVESF 996
>gi|308469043|ref|XP_003096761.1| hypothetical protein CRE_23681 [Caenorhabditis remanei]
gi|308241452|gb|EFO85404.1| hypothetical protein CRE_23681 [Caenorhabditis remanei]
Length = 1721
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 53/109 (48%), Gaps = 15/109 (13%)
Query: 636 LMGTVDPTGILKSNEVCI----------ILKD-GQVSWEKVLVYRNPGLHFGDIHVLKAT 684
+ G VD TG L+ +V + LKD G KVLV + P L GD+ + +A
Sbjct: 881 VFGVVDETGQLQYGQVFVRYTENVDNKSPLKDFGTTLTGKVLVTKFPSLCEGDVRMYEAV 940
Query: 685 YVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
+ EL K I FP GPRS DE+AG D DGD Y V + EL
Sbjct: 941 DIPELYHL----KDVIVFPQTGPRSQPDEMAGSDLDGDEYAVIWDAELF 985
>gi|392575092|gb|EIW68226.1| hypothetical protein TREMEDRAFT_74213 [Tremella mesenterica DSM
1558]
Length = 1004
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 94/416 (22%), Positives = 163/416 (39%), Gaps = 82/416 (19%)
Query: 471 PLLMQVRLFYNGTAVKGTL-LLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKT 529
P +Q RL KG L ++ +++R SM+K K+ L VV+
Sbjct: 530 PSAIQFRL----GGAKGMLAFWPGRVKDHEVKMRKSMVKFKSG--------LKDLNVVR- 576
Query: 530 SNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKV----SFNYG 585
I ++ G+PE +DI +A+ +G+ +R A K
Sbjct: 577 ------------FIMIMCANGIPEQLMIDIFNDAVASIKGL--RERVATKTLSRDDHKLI 622
Query: 586 GMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQ----AGKLPVTESYYLMGTVD 641
+F +I +G + P + SI+ E ++LQ ++ + +L+G D
Sbjct: 623 STCSEFPLLALIKAGFH-ENPMILDICSIV---ETRALQDLKWRARVRLPTGVFLIGIAD 678
Query: 642 PTGILKSNEVCIILKDGQ-----VSWEKVLVYRNPGLHFGDIH---VLKATYVKELEDFV 693
TG LK EV ++ + +V+V R P LH GD+ + Y++ L
Sbjct: 679 ETGTLKEGEVFCQYQESDDTPPVIVESEVIVCRAPALHPGDVRRAFAVDNPYLRHL---- 734
Query: 694 GTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANK 753
K + F G R L + + GGD DGD + F E + S+ SA
Sbjct: 735 ---KNVLVFSVQGERDLPNMLGGGDLDGDAP---------QGFPSDELYGSS----SATG 778
Query: 754 RLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKEN 813
D + + E F + T ++ +C A D E+K +
Sbjct: 779 PKGDSTAPQRE---FCSVMVTDDSQNDVLGQVDNCHLARSD---------WEDKGPFHPD 826
Query: 814 MLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDES-VSFESTSVLGTIY 868
L L I+ A+D PK + P ++ + +P +M +D + ++ES +LG ++
Sbjct: 827 CLELSEIHSTAVDFPKTGQAAILDPS-MRPKLWPDFMDKDATKKTYESQKILGILF 881
>gi|310799490|gb|EFQ34383.1| RNA-directed RNA polymerase [Glomerella graminicola M1.001]
Length = 1348
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 13/120 (10%)
Query: 630 VTESYYLMGTVDPTGILKSNEVCI---------ILKDGQVSWEKVLVYRNPGLHFGDIHV 680
V+ S YL VD +L+ EV + D + VLV R+P DI
Sbjct: 866 VSNSAYLFMVVDFWNVLEEGEVHLCFSSKFQTDTFSDSILHGCDVLVARSPAHFVSDIQR 925
Query: 681 LKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESE 740
+KA + EL T K I F G LAD+++GGD+DGD +V P ++ +FK ++
Sbjct: 926 VKAVFKPELH----TIKDVIVFSAKGNVPLADKLSGGDYDGDKAWVCWEPAIVSNFKNAD 981
>gi|403417878|emb|CCM04578.1| predicted protein [Fibroporia radiculosa]
Length = 1258
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 116/519 (22%), Positives = 199/519 (38%), Gaps = 119/519 (22%)
Query: 414 HTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLL 473
H DG G IS+DLA +++ C ++ ER YG P
Sbjct: 620 HVDGLGRISQDLA----NAIWEGMC--EEEPERRA------------------YGVKPSA 655
Query: 474 MQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDG-----------QTFN 522
Q+R KG + ++++L + + +RP M K K R DG
Sbjct: 656 FQIRFI----GYKGVVAVDRQLKGRKLCLRPEMRKFKPHR--CDGCRAKLFCAHLNNPIQ 709
Query: 523 SLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALK--- 579
SL + + + PR+ YL+R+ + +L V + ++ N D+A+ R++ +
Sbjct: 710 SLHIAEAFHGPRRAYLTRDPVTILEDREVRD----EVFENLQDEAKRTTYMARDSSEKYL 765
Query: 580 -------VSFNYGG-------MDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQA 625
+ F Y +D IL+ L++P+ ++ + L+
Sbjct: 766 ELLQSHHLGFQYRLPFLLQRLLDIGLDCGSQILAENVLNDPFFLGLREYGIQHVLRDLKT 825
Query: 626 -GKLPVTESYYLMGTVDP-TGILKSNEVCIILKDGQV------------SWEKVLVY--R 669
++PV SY L+G D K LK+GQ+ W K L + R
Sbjct: 826 RARIPVPNSYLLVGVADEGPAYTKQGHSVYQLKNGQIFACVQESPDAKPIWLKGLCFITR 885
Query: 670 NPGLHFGDIHVLKATYVKELED----FVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYF 725
+P +H GD+ + A ++ D K + P G RSLA + GGD DGD+Y+
Sbjct: 886 SPTVHPGDVQRVTAIGKPDVPDGQICLFEHMKNVVVLPTVGCRSLASCLGGGDLDGDLYY 945
Query: 726 VSRNPELLKHFKESERWMSTSKNLSAN---KRLIDFSLEELESELFKLFLNTRFCPSNAK 782
V +LL K + DF +E + S++ L R
Sbjct: 946 VFHYSQLLPVLHVPPAAYPDEKPPPRQFTFDDVCDFIVEYMHSDVLGLLSVRR------- 998
Query: 783 SLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVE---VPE 839
L + D+S E ++ + + L + DA+D P K+G V P+
Sbjct: 999 --------------LVIADQSQE--GSLDKRCIELARLCSDAVDYP-KTGRAVNSRTAPK 1041
Query: 840 DLKVEKFPCYMRRDESVS------FESTSVLGTIYNTVK 872
L + P + ++++S ++S LG +Y +K
Sbjct: 1042 KL-LPYSPDWHADEDNISDPLADCYQSDRALGKLYRRIK 1079
>gi|116208690|ref|XP_001230154.1| hypothetical protein CHGG_03638 [Chaetomium globosum CBS 148.51]
gi|88184235|gb|EAQ91703.1| hypothetical protein CHGG_03638 [Chaetomium globosum CBS 148.51]
Length = 1372
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 80/158 (50%), Gaps = 20/158 (12%)
Query: 607 YLQHRLSILMKEEKKSLQAGKLP--VTESYYLMGTVDPTGILKSNEVCIIL------KDG 658
YLQ L+ ++++K + KL V S Y+ +D G+L+ NEV + +
Sbjct: 852 YLQD-LAFELQKQKCDILRTKLNIRVGRSAYIYMVIDFWGVLEENEVHVGFSSKFRDESD 910
Query: 659 QVSWE-----KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADE 713
+S+ VLV R+P D+ ++A + EL K I F G LAD+
Sbjct: 911 DISYTLLADCDVLVARSPAHFVSDVQKVRAVFKPELHAL----KDVIVFSAKGNIPLADK 966
Query: 714 IAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSA 751
++GGD+DGDM +V +P+++++F ++ M +LSA
Sbjct: 967 LSGGDYDGDMAWVCWDPDIVENFVNAD--MPDEPDLSA 1002
>gi|406700852|gb|EKD04014.1| RNA-directed RNA polymerase [Trichosporon asahii var. asahii CBS
8904]
Length = 1087
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 105/432 (24%), Positives = 176/432 (40%), Gaps = 78/432 (18%)
Query: 470 PPLLMQVRLFYNGTAVKGTLLLNKKLPPQT----IQIRPSMIKVKADRDLSDGQTFNSLE 525
PP +Q+RL KG L L + + + +RPSMIK K+ SD + +L+
Sbjct: 471 PPCSVQMRL----GGSKGVLSLMSREQEEEYDADVVLRPSMIKSKSAAGFSDDPSVLTLD 526
Query: 526 VVKTSNQPRKTYLSRNLIALLSYGGVP--------EIFFLDILRNAL---------DDAR 568
V+K LS I ++ GVP E+ F I + L DD R
Sbjct: 527 VLKVDGLKVGCNLSSEAIIIMEDRGVPPDVLIAKAELEFEKIRESLLPVPHPGENEDDVR 586
Query: 569 GVFSNKRNALKVSFNYGGMDYDFTSAR-------MILSGISLD---EPYLQHRLSILMKE 618
+ L + GG+ + R ++G+SL+ + + S+ K
Sbjct: 587 ------QRLLHAVYTLGGVGSEREKRRCRQLGKSTKVAGLSLESTQQDEYEEDTSVAEKS 640
Query: 619 -EKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCI-----------ILKDGQVSWEKVL 666
+++ KLPV +S + D G+LK NE+ I ++ VL
Sbjct: 641 LTDRAVSDFKLPVDQSLSALIVPDTLGVLKPNEIYIAPSSAALVNPSTMRPMSCVEGDVL 700
Query: 667 VYRNPGLHFGDIHVLKATY---VKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDM 723
++R+P D+ ++A Y +K L+D + S + C S A +AGGD+DGD
Sbjct: 701 IFRSPCKLPTDVRKMRAVYHSKLKHLQDCIVMSADSAM--CTA--SPASLLAGGDYDGDT 756
Query: 724 YFVSRNPELLKHFKESERWMSTSKNLSA---NKR---LIDF-----SLEELESELFKLFL 772
V + +L+K F+ + K A NK +IDF + E ++ +
Sbjct: 757 ATVIWDEDLVKPFRNAPEPDLDEKKFQAENFNKEVVAVIDFLHAVRGRSHGKEEEARMII 816
Query: 773 NTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSG 832
N + L Q + R+ + D + +RL N++ LD+ +KSG
Sbjct: 817 NLQHF-----LLGGIMDQQLTGRYSAMHDYAVYTLGPSHPVTVRLANMFCLVLDS-RKSG 870
Query: 833 IKVEVPEDLKVE 844
+ V+ PE L+ +
Sbjct: 871 LTVK-PEVLRAD 881
>gi|268563038|ref|XP_002638736.1| C. briggsae CBR-EGO-1 protein [Caenorhabditis briggsae]
Length = 1631
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 112/261 (42%), Gaps = 45/261 (17%)
Query: 502 IRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILR 561
RPS IK + R D +E+VK S+ P L++ I +L V E+ L+ R
Sbjct: 745 FRPSQIKFISKRHPRD-----QVEIVKYSS-PVPVSLNKPFINILD--QVSEMQSLECHR 796
Query: 562 NA-------LDDARGVFSNK-------RNALKVSFNYGGMDYDFTSARMILSGISLDEPY 607
LD F+ + RN LK +DY T+ LS EP+
Sbjct: 797 RVTNRIEELLDRQMLSFAQQMIDETFCRNRLKELPRRIDIDYLRTTWGFTLSS----EPF 852
Query: 608 LQHRLSILMK-EEKKSLQAGKLPVTESY--YLMGTVDPTGILKSNEVCI------ILKDG 658
+ + +K K L+ ++P+ ++G VD TG L+ ++ + LK
Sbjct: 853 FRSLIKASIKFSITKQLRKEQIPIPADLGRSMLGVVDETGRLQYGQIFVQYTRNLALKLP 912
Query: 659 QVSWEK------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLAD 712
S + VL+ +NP + GD+ + +A + EL + FP +GPR D
Sbjct: 913 PKSASRSVLTGTVLLTKNPCIVAGDVRIFEAVDIPELHHMCD----VVVFPQHGPRPHPD 968
Query: 713 EIAGGDFDGDMYFVSRNPELL 733
E+AG D DGD Y + + +LL
Sbjct: 969 EMAGSDLDGDEYSIIWDQQLL 989
>gi|336378304|gb|EGO19462.1| hypothetical protein SERLADRAFT_478899 [Serpula lacrymans var.
lacrymans S7.9]
Length = 496
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 626 GKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEK-----VLVYRNPGLHFGDIHV 680
+ V SY L+G D G L+ E+ ++D + K V++ R+P +H GD+
Sbjct: 62 AHIAVPGSYTLLGVSDEWGCLREGEIYATVQDERTGLYKPIEGPVVITRSPQVHPGDLQF 121
Query: 681 LKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMY 724
+ A EL + F C G RSLA +AGGD DGD +
Sbjct: 122 VTAVRRPELSHLTNV----VVFSCEGDRSLASCLAGGDLDGDDF 161
>gi|396489578|ref|XP_003843139.1| similar to RNA-directed RNA polymerase 2 [Leptosphaeria maculans JN3]
gi|312219717|emb|CBX99660.1| similar to RNA-directed RNA polymerase 2 [Leptosphaeria maculans JN3]
Length = 1435
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 24/150 (16%)
Query: 604 DEPYLQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKSNEVCIILK------ 656
D P+L L L+++ + + Q + P+ + +L+G DP G+L+ +V I
Sbjct: 940 DSPFLAKVLINLIRQRQSVMEQKLRAPLGSATFLLGLADPEGVLEPGQVHISFSLPFVDE 999
Query: 657 ---------DGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGP 707
DG +VL+ R P DI ++ +L + I FP G
Sbjct: 1000 FSRQTYRHLDGL----EVLIARQPACRRSDIQKVRVVTYSKLAHL----RDVIVFPTRGQ 1051
Query: 708 RSLADEIAGGDFDGDMYFVSRNPELLKHFK 737
LA ++ GGD+DGD+++ +L++ FK
Sbjct: 1052 YPLAGKLQGGDYDGDIFWTCWENDLVESFK 1081
>gi|70608336|gb|AAZ04410.1| putative RNA-dependent RNA polymerase SDE1/SGS2/RDR6 [Nicotiana
benthamiana]
Length = 172
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 72/158 (45%), Gaps = 26/158 (16%)
Query: 592 TSARMILSGI-SLDEPYLQHRLSILMKEEKKSLQ-AGKLPVTESYYLMGTVDPTGILKSN 649
T+A M+ +G EP+L+ LS + + L+ ++ V +LMG +D G L+
Sbjct: 17 TAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 76
Query: 650 EVCI--------------------ILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKEL 689
+ I I K+ QV V++ +NP LH GD+ +L+A V L
Sbjct: 77 QCFIQVSSPSLESCFVKHGPNFSDIKKNLQVIKGLVIIAKNPCLHPGDVRILEAVDVPGL 136
Query: 690 EDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVS 727
+ FP G R D+ +G D DGD+YFV+
Sbjct: 137 HHLYD----CLVFPQKGDRPHPDQASGSDLDGDLYFVT 170
>gi|345568648|gb|EGX51541.1| hypothetical protein AOL_s00054g240 [Arthrobotrys oligospora ATCC
24927]
Length = 1615
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 75/322 (23%), Positives = 132/322 (40%), Gaps = 76/322 (23%)
Query: 470 PPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFN----SLE 525
PP +Q R+ A KG +++ +P + ++R I+++ D++ DG + +L+
Sbjct: 933 PPSAVQARI----GAAKGLWIMDPSIPLDSEELR---IRIRPDQNKFDGISLEPEHRTLD 985
Query: 526 VVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILR-------------NALDDARGVF- 571
+ TS + + L+ I +L + GV E +LR LDD G F
Sbjct: 986 ICNTSKPLKPSALNLQFIVILLHNGVTEATLEQLLREDIRNEVTELFNGGRLDD--GAFL 1043
Query: 572 ----------SNKRNALKVSFNYGGMDYDFT--SARMILSGISLDEPYLQHRLSILMKEE 619
++R+ ++ G + + +I +G +L L+ ++ +
Sbjct: 1044 RKYLERVKLSGSQRDGRAIAMK-GRIPLGLAERAIDLINAGFTLQNQTLKDWFEKVLTDH 1102
Query: 620 KKSLQAG---KLPVTESYYLMGTVDPTGILKSNEVCI------------------ILKDG 658
+L+ ++P + Y + DP+G LK +V + +L+ G
Sbjct: 1103 CDTLKDKMRIRIPWSCQPYCV--PDPSGKLKKGQVYLRFGPESKFIDPKTMMAIDVLRGG 1160
Query: 659 QVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCN---GPRSLADEIA 715
VLV RNP DI + A V EL I FP + RSLAD ++
Sbjct: 1161 ------VLVGRNPAHFASDIQKVTAVDVPELRFLTDV----IVFPADPESNDRSLADYLS 1210
Query: 716 GGDFDGDMYFVSRNPELLKHFK 737
GGD+DGD + + L+ FK
Sbjct: 1211 GGDYDGDRVWTCWDQRLVGEFK 1232
>gi|449296300|gb|EMC92320.1| hypothetical protein BAUCODRAFT_569676 [Baudoinia compniacensis
UAMH 10762]
Length = 1367
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 100/264 (37%), Gaps = 40/264 (15%)
Query: 511 ADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGV 570
+D DL D +L+VV S R +++ + +L GVP+ LD++ +
Sbjct: 606 SDSDLDD-PARRTLDVVDYSKSVRSSHIPPGFLPVLRDRGVPKEAILDVVGEQVKLETSG 664
Query: 571 FSNKRNALKVSFNYGGMDYDFTSARMILSGISLDE-----------------------PY 607
F + + + R GI L PY
Sbjct: 665 FLQALKSRSTLHRWVLCQRNVVGFRAAAGGIVLTAGFPANTIERILFLLESWFEPAQCPY 724
Query: 608 LQHR-LSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCI----ILKDGQVS- 661
L+ + L +A KL + +M D T LK E + +KDG
Sbjct: 725 LRKQVLDFAGHVFDVKAKAWKLHLGSCTSVMMIPDWTQTLKPGEAYLSFSKPIKDGTSGR 784
Query: 662 -WEK-----VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIA 715
W +LV RNP + D+ L+A L I F GPRSLA +++
Sbjct: 785 VWSSLAGMDILVARNPCIRNSDMQKLRAVSCAALAGIFDV----IVFSTQGPRSLASKLS 840
Query: 716 GGDFDGDMYFVSRNPELLKHFKES 739
GGD+DGD+ +V +P L+ FK +
Sbjct: 841 GGDYDGDIAWVCWDPRLVLPFKNA 864
>gi|210148496|gb|ACJ09171.1| RNA-dependent RNA polymerase [Cryptococcus neoformans var. grubii]
Length = 1120
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 94/387 (24%), Positives = 168/387 (43%), Gaps = 55/387 (14%)
Query: 500 IQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDI 559
I++RPSMIK ++ DL+D N + + K + +L+R I ++ GVP + I
Sbjct: 585 IRLRPSMIKFRS--DLAD---LNVIRIAKY----QAAFLNRQFINIMCANGVPHELIIGI 635
Query: 560 LRNALDDARGVFSNKRNALKVSFN---YGGMDYDFTSARMILSGISLDEPYLQHRLSILM 616
+A+ D +G F ++ V+ N + DF A++I SG + + P L +I+
Sbjct: 636 FEDAIADIKG-FKDRVWNNAVTENDQQLIALCNDFPLAQLIRSGFN-ENPLLLDVAAII- 692
Query: 617 KEEKKSLQ----AGKLPVTESYYLMGTVDPTGILKSNEVCIILKDG-----QVSWEKVLV 667
E ++LQ ++ +++ YL+G D TG LK EV ++ +V +VLV
Sbjct: 693 --ECRALQDLKWRARVKLSDGVYLIGIADETGTLKEGEVFCQFQENDDSPPKVVVNEVLV 750
Query: 668 YRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVS 727
R P D+ A EL K I F G R + + GGD DGD Y +
Sbjct: 751 CRAPAC---DVRRAWAVDRPELRHL----KNVIVFSTQGMRDMPSMLGGGDLDGDDYTLI 803
Query: 728 RNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAAD 787
+ ++ K + + + + K + + + L + LN + +
Sbjct: 804 WDQRFVQSLKVYDPMDYEAPDPISVKHV---TQKHLNENFVQYVLN------DVLGQVDN 854
Query: 788 CWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFP 847
C A+ D + L L I+ ++D K+G + L+ +++P
Sbjct: 855 CHLALSDMY-----------TPFDPRCLHLSEIHSVSVDF-AKTGQAAALDPSLRPKEWP 902
Query: 848 CYMRRDE-SVSFESTSVLGTIYNTVKS 873
+M +D+ V +ES +LG I+ V++
Sbjct: 903 DFMDKDDVKVVYESKGILGKIFRIVQA 929
>gi|209978362|gb|ACJ04634.1| RNA-dependent RNA polymerase [Cryptococcus neoformans var. grubii]
Length = 1120
Score = 57.4 bits (137), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 94/387 (24%), Positives = 168/387 (43%), Gaps = 55/387 (14%)
Query: 500 IQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDI 559
I++RPSMIK ++ DL+D N + + K + +L+R I ++ GVP + I
Sbjct: 585 IRLRPSMIKFRS--DLAD---LNVIRIAKY----QAAFLNRQFINIMCANGVPHELIIGI 635
Query: 560 LRNALDDARGVFSNKRNALKVSFN---YGGMDYDFTSARMILSGISLDEPYLQHRLSILM 616
+A+ D +G F ++ V+ N + DF A++I SG + + P L +I+
Sbjct: 636 FEDAIADIKG-FKDRVWNNAVTENDQQLIALCNDFPLAQLIRSGFN-ENPLLLDVAAII- 692
Query: 617 KEEKKSLQ----AGKLPVTESYYLMGTVDPTGILKSNEVCIILKDG-----QVSWEKVLV 667
E ++LQ ++ +++ YL+G D TG LK EV ++ +V +VLV
Sbjct: 693 --ECRALQDLKWRARVKLSDGVYLIGIADETGTLKEGEVFCQFQENDDSPPKVVVNEVLV 750
Query: 668 YRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVS 727
R P D+ A EL K I F G R + + GGD DGD Y +
Sbjct: 751 CRAPAC---DVRRAWAVDRPELRHL----KNVIVFSTQGMRDMPSMLGGGDLDGDDYTLI 803
Query: 728 RNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAAD 787
+ ++ K + + + + K + + + L + LN + +
Sbjct: 804 WDQRFVQSLKVYDPMDYEAPDPISVKHV---TQKHLNENFVQYVLN------DVLGQVDN 854
Query: 788 CWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFP 847
C A+ D + L L I+ ++D K+G + L+ +++P
Sbjct: 855 CHLALSDMY-----------TPFDPRCLHLSEIHSVSVDF-AKTGQAAALDPSLRPKEWP 902
Query: 848 CYMRRDE-SVSFESTSVLGTIYNTVKS 873
+M +D+ V +ES +LG I+ V++
Sbjct: 903 DFMDKDDVKVVYESKGILGKIFRIVQA 929
>gi|384496670|gb|EIE87161.1| hypothetical protein RO3G_11872 [Rhizopus delemar RA 99-880]
Length = 1225
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 17/158 (10%)
Query: 594 ARMILSGISLDEPYLQHRLSILMKEEKKSLQAG-KLPVTESYYLMGTVDPTGILKSNEVC 652
R++ SG L ++ R+S + K+ L++ K+ + +S + DP GIL+ +EV
Sbjct: 700 VRLLDSGFDLSNVFVATRISNIFKQLMAPLKSKYKIEIEQSCTVTCIPDPIGILEPDEVY 759
Query: 653 IILKDGQVSWEK-----------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIF 701
+ L +V EK V+V RNP D+ +KA L + I
Sbjct: 760 LQLSTRKVD-EKTGIRAGLILGDVVVARNPCGLKSDVQKVKAIDCPALRMYTD----LII 814
Query: 702 FPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKES 739
F G SLA ++ GGD+DGD+ F + +++ F S
Sbjct: 815 FSTKGESSLASKLGGGDYDGDLVFCCWDQRIVEPFTAS 852
>gi|440493516|gb|ELQ75976.1| RNA-directed RNA polymerase QDE-1, partial [Trachipleistophora
hominis]
Length = 714
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 94/211 (44%), Gaps = 38/211 (18%)
Query: 666 LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYF 725
+V +NP LH GDI + Y KEL + K + F G R + +G D DGD+YF
Sbjct: 262 IVAKNPCLHPGDIRKVHCVYKKELLHY----KNVLVFSRKGTRPTFNMCSGSDLDGDLYF 317
Query: 726 VSRNPELL---KHF-KESERWMSTSKNLSANKRLIDFSLE-ELESELFKLFLNTRFCPSN 780
+S + L+ +HF + + SK + +++F E EL K+ SN
Sbjct: 318 ISWDKRLIPRNEHFPQSYQSSSYLSKEHIVTQDMVNFFTRFAKEDELGKI--------SN 369
Query: 781 AKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPED 840
A + +D + D L+L ++ +D P K+G +P++
Sbjct: 370 AHLVYSD-IHGITD-----------------PQALKLAYLFSMGVDFP-KTGYIARLPQN 410
Query: 841 LKVEKFPCYMRRDESVSFESTSVLGTIYNTV 871
L+ E +P +M R S++S V+G +Y V
Sbjct: 411 LEPEVYPDFMERGR--SYKSGRVMGVLYRRV 439
Score = 46.2 bits (108), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 77/188 (40%), Gaps = 36/188 (19%)
Query: 471 PLLMQVRLF-YNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKT 529
P Q+R Y G V+ + P + +R SM K + T+ LEVV
Sbjct: 15 PTAFQIRFAGYKGVVVRAHI-------PHDLILRKSMRKFNS--------TYTILEVVNY 59
Query: 530 SNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDY 589
S QP + YL+R +I +L G+P+ F+ + L Y +++
Sbjct: 60 S-QPIECYLNRQIIMILEGLGIPKHNFISLQNEYLMQM----------------YRAINH 102
Query: 590 DFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSN 649
S + G++L + + L +E G++ V+ LMG +D G+L N
Sbjct: 103 SLISKYCRIGGVALVDRMSGAVIGRLFRE---MCAKGRIFVSNGVVLMGVIDEEGVLGEN 159
Query: 650 EVCIILKD 657
EV + + D
Sbjct: 160 EVFVRVCD 167
>gi|449304105|gb|EMD00113.1| hypothetical protein BAUCODRAFT_119665 [Baudoinia compniacensis
UAMH 10762]
Length = 1187
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 115/277 (41%), Gaps = 43/277 (15%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P ++Q+R KG + L+ +L + + +R +M K G LE+
Sbjct: 612 PTVLQIRF----QGAKGMVSLDSRLQGRQLLLRTNMEKFV-------GSQSRVLEICGAG 660
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRN------------AL 578
+P L+R + +L G P L + + + + + N A
Sbjct: 661 FRPLPMVLNRQSVQILEDLGTPTEAVLSLQTREVQKLQCMLESAVNTASLLETMELTKAA 720
Query: 579 KVSFNYGGMD---YDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYY 635
K+ +D DF R L+GI+ + + H+L + G++ + +
Sbjct: 721 KLPDLIDMLDQARLDFRHDRF-LTGIA--QMAVVHQLRDIKYR-------GRIHINDGVT 770
Query: 636 LMGTVDPTGILKSNEVCIILK---DG---QVSWEKVLVYRNPGLHFGDIHVLKATYVKEL 689
L G +D TG L+ EV ++ + DG ++ +L+ R+P +H GDI + A V
Sbjct: 771 LYGIMDETGYLQEGEVYVVTEKAPDGGRKELIRNNILITRSPAMHPGDIQQVNAVSVPAD 830
Query: 690 EDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFV 726
S + F +G R L +++GGD DGD+Y +
Sbjct: 831 SPLKHLSN-VVVFSQHGARDLPSQLSGGDLDGDLYNI 866
>gi|66736429|gb|AAY54273.1| RNA-dependent RNA polymerase [Caenorhabditis remanei]
Length = 200
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 24/155 (15%)
Query: 636 LMGTVDPTGIL-------------------KSNEVCIILKDGQVSWEKVLVYRNPGLHFG 676
++G VD TG L +SN + ++ QV VL+ +NP + G
Sbjct: 9 MLGIVDETGRLQYGQIFVQYTRNSNEKLPPRSNMQHMKVQGSQVVTGTVLLTKNPCIVTG 68
Query: 677 DIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHF 736
D+ + +A + EL + FP +GPR DE+AG D DGD Y V + +LL
Sbjct: 69 DVRIFEAVDIPELHHLCD----VVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQQLLLDK 124
Query: 737 KESE-RWMSTSKNLSANKRLIDFSLEELESELFKL 770
E+ + K + ++ +ID + E + KL
Sbjct: 125 NEAPFDFTVEKKEMPYDREMIDQLMHEFYVKYLKL 159
>gi|302501841|ref|XP_003012912.1| RNA-directed RNA polymerase, putative [Arthroderma benhamiae CBS
112371]
gi|291176473|gb|EFE32272.1| RNA-directed RNA polymerase, putative [Arthroderma benhamiae CBS
112371]
Length = 1125
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 60/125 (48%), Gaps = 16/125 (12%)
Query: 621 KSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEK---------VLVYRNP 671
+ L+A K+ + +S Y+ DP G+L+ ++ + L D SWE VLV R P
Sbjct: 557 QKLEALKIKIPQSTYVYCIPDPYGVLEEGQIHLDLGD---SWEDGTTDLDGIDVLVARAP 613
Query: 672 GLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPE 731
DI +A + L K+ FP G LA ++GGD+DGD +V + E
Sbjct: 614 AHLPSDIQKCRAVFHPALRYL----KHVAIFPTKGDVPLASLLSGGDYDGDEVWVCWDQE 669
Query: 732 LLKHF 736
++K F
Sbjct: 670 IVKPF 674
>gi|308458494|ref|XP_003091586.1| hypothetical protein CRE_24272 [Caenorhabditis remanei]
gi|308255699|gb|EFO99651.1| hypothetical protein CRE_24272 [Caenorhabditis remanei]
Length = 1634
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 78/300 (26%), Positives = 130/300 (43%), Gaps = 45/300 (15%)
Query: 664 KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDM 723
KVLV + P L GD+ + +A + EL + I FP GPRS DE+AG D DGD
Sbjct: 874 KVLVTKFPSLCEGDVRMYEAVDIPELHHL----QDVIVFPQTGPRSQPDEMAGSDLDGDE 929
Query: 724 YFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKS 783
Y V +P+L F+ +++ + S+ K F+ EE++ + T +
Sbjct: 930 YAVIWDPQLF--FERNQK----AFEYSSEKPDQHFAAEEMDDGFHWFY--TEYAKQEDVG 981
Query: 784 LAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKV 843
+ + D+F G S ++ +N + L P S E P + +
Sbjct: 982 VTSINHLHQSDQF---GINSDVCRSIAIKNGMALDYAKSGVAPPPLTSVWSSEGPPE-RS 1037
Query: 844 EKFPCYM--RRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCFDDG--VPEAC- 898
E+ P Y R + S S++S+ +LG +Y + R V ++ C +D VP A
Sbjct: 1038 ERRPDYANNRYNGSPSYQSSRLLGQLYREL-------RCVNDV----CSEDSKQVPVAID 1086
Query: 899 -MTKWKGYYD----------QYRWEMKEAIDKCTVEREEAAELVIEKYKQILYGAAEFEQ 947
+ W+G+ + +Y E++ +D V E AE+ Y++I +E EQ
Sbjct: 1087 PLLTWQGWEEFVDGAHLHMTRYNAEVRSIMDTYGVATE--AEIFSGCYREIRNRHSEKEQ 1144
>gi|85091735|ref|XP_959047.1| hypothetical protein NCU07534 [Neurospora crassa OR74A]
gi|4803727|emb|CAB42634.1| RNA-dependent RNA polymerase [Neurospora crassa]
gi|28920444|gb|EAA29811.1| predicted protein [Neurospora crassa OR74A]
Length = 1402
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 70/144 (48%), Gaps = 14/144 (9%)
Query: 607 YLQHRLSILMKEEKKSLQAG-KLPVTESYYLMGTVDPTGILKSNEVCI----ILKDGQVS 661
YLQ L K + +L++ + V S Y+ D G+L+ NEV + +D + S
Sbjct: 890 YLQDIAWDLQKRKCDTLKSKLNIRVGRSAYIYMIADFWGVLEENEVHVGFSSKFRDEEES 949
Query: 662 WE-----KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAG 716
+ VLV R+P DI ++A + EL K I F G LA +++G
Sbjct: 950 FTLLSDCDVLVARSPAHFPSDIQRVRAVFKPELHSL----KDVIIFSTKGDVPLAKKLSG 1005
Query: 717 GDFDGDMYFVSRNPELLKHFKESE 740
GD+DGDM +V +PE++ F +E
Sbjct: 1006 GDYDGDMAWVCWDPEIVDGFVNAE 1029
>gi|241620373|ref|XP_002408656.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
gi|215503015|gb|EEC12509.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
Length = 529
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 91/338 (26%), Positives = 139/338 (41%), Gaps = 72/338 (21%)
Query: 436 EKCTNDDSTERSIDRKE-LEANFSD-VARTES------HYGEP----PLLMQVRLFYNGT 483
+ CT D RK ++ NFSD V R H P P +Q+R Y G
Sbjct: 36 QACTRVDRDILLKGRKPGIKYNFSDGVGRISPSVLARVHAALPAEGKPSAIQIR--YGGC 93
Query: 484 AVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLI 543
KG L+L+ L I R SM K + + L ++KTS +PR L+R +I
Sbjct: 94 --KGMLVLDPTLEGDQIVFRDSMFKYPSQSE--------ELFILKTS-RPRVVKLNRPMI 142
Query: 544 ALLSY----GGVPEI---FFLDILRNALDDARGVFSNKRN--ALKVSFNYGGMDYDFTSA 594
+LS GV +I F+ + ++ L+ N + AL S + M Y
Sbjct: 143 TILSQKMTRSGVQDIEDGVFMRMQQDCLEPYLDSLFNDKGTAALLQSESSLRMPY----R 198
Query: 595 RMILSGISLD-EPY-------LQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGIL 646
+ +G+ L EP+ L HR +K++ L +P + G +D T L
Sbjct: 199 ELAEAGLDLHAEPFFRSLLWALHHRCLKDLKDKMNIL----VPPRFGRTMFGVLDETATL 254
Query: 647 KSNEVCI------------------ILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKE 688
+ +V + + ++ +V+V +NP +H GDI +L+A V
Sbjct: 255 QYGQVYVRYSTDLDRFGPDDESQYRLCTTFRLRAGRVMVTKNPCIHPGDIRLLEAVDVPA 314
Query: 689 LEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFV 726
L + + FP G R DE+AG D DGD Y V
Sbjct: 315 LSHI----RDCVVFPQIGKRPHPDEMAGSDLDGDEYSV 348
>gi|122920829|pdb|2J7N|A Chain A, Structure Of The Rnai Polymerase From Neurospora Crassa
gi|122920830|pdb|2J7N|B Chain B, Structure Of The Rnai Polymerase From Neurospora Crassa
gi|122920831|pdb|2J7O|A Chain A, Structure Of The Rnai Polymerase From Neurospora Crassa
Length = 1022
Score = 56.6 bits (135), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 70/144 (48%), Gaps = 14/144 (9%)
Query: 607 YLQHRLSILMKEEKKSLQAG-KLPVTESYYLMGTVDPTGILKSNEVCI----ILKDGQVS 661
YLQ L K + +L++ + V S Y+ D G+L+ NEV + +D + S
Sbjct: 510 YLQDIAWDLQKRKCDTLKSKLNIRVGRSAYIYMIADFWGVLEENEVHVGFSSKFRDEEES 569
Query: 662 WE-----KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAG 716
+ VLV R+P DI ++A + EL K I F G LA +++G
Sbjct: 570 FTLLSDCDVLVARSPAHFPSDIQRVRAVFKPELHSL----KDVIIFSTKGDVPLAKKLSG 625
Query: 717 GDFDGDMYFVSRNPELLKHFKESE 740
GD+DGDM +V +PE++ F +E
Sbjct: 626 GDYDGDMAWVCWDPEIVDGFVNAE 649
>gi|403164222|ref|XP_003324286.2| hypothetical protein PGTG_05092 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375164936|gb|EFP79867.2| hypothetical protein PGTG_05092 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1282
Score = 56.6 bits (135), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 135/619 (21%), Positives = 250/619 (40%), Gaps = 114/619 (18%)
Query: 283 KYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCY---FVRMESSAFIDMGYQ 339
+Y +G+ V R + F + S+S +KC+ FV F+ G
Sbjct: 535 RYRPFLVDGLYVAGRRFMFLGY------------SSSALKCHQAWFV----CPFVHKGA- 577
Query: 340 YILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRD 399
++S + + F V + A YM+R++ + T K V + + +I D
Sbjct: 578 -VMSAEKIRSRMGTFSLVNRIP--ARYMARIAQAFTTTQK-AVTLAPSQLRKIPD----- 628
Query: 400 KDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSD 459
V ++G + TDG G IS LA + + T + R+
Sbjct: 629 -----VQRNGS--VFTDGVGTISPSLARQVEQALL--------GTMMVLKRRN------- 666
Query: 460 VARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQ 519
A S Y Q+RL KG L ++ L + + +RPSM K AD
Sbjct: 667 -AINSSCY-------QIRL----GGYKGMLSIDPTLAGEIVGLRPSMSKFDADS------ 708
Query: 520 TFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALK 579
+L++ + +P ++L+R LI +L +P F+ + + + R + K
Sbjct: 709 --YTLDIASSFRRPLPSFLNRPLIKILEDLKIPSHVFMTAQQKTVRSIERSRESFRQSAK 766
Query: 580 VSFNYGGMDYDFTSARMILSGISL---DEP------YLQHRLSILMKEEKKSLQ-AGKLP 629
+ G+ + + +++ SL D P ++ L + + E + L+ ++P
Sbjct: 767 L-MEKAGLGFSSSFPKILKRFSSLMRTDNPDEVRSTFIDDCLDLAVIECLRDLKYRARIP 825
Query: 630 VTESYYLMGTVDPTGILKSNEV--CIILKDGQVSW--EKVLVYRNPGLHFGDIHVLKAT- 684
+ SY L+G D L+ ++ C+ K + K+ + R+P +H GD+ V+ A
Sbjct: 826 LEGSYTLVGVADEEFCLQEGQIYACVQEKGKPRKYLSGKIAISRSPSIHPGDVQVVHAIG 885
Query: 685 YVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMS 744
+ +G + F G RSL + GGD DGD+Y + +P+++ K+ S
Sbjct: 886 RPPPGSEKLGALVNCVVFSVIGKRSLPSCLGGGDLDGDLYSLITDPQMIPFQKD---ICS 942
Query: 745 TSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESA 804
L+ L+ + FL+ +++D + R L + D+
Sbjct: 943 PGSYSPIQPILLPQPCTILDG--IEFFLDY---------ISSDLVGIIATRHLQIADQ-- 989
Query: 805 EEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEK----FPC--YM----RRDE 854
+ + + L+L ++ A+D P K+G+ V + + KVE F C YM ++
Sbjct: 990 QTLGTLHPDCLKLAELHSKAVDYP-KTGVPVSIQDLPKVESAKPDFMCPEYMLNVHKKGN 1048
Query: 855 SVSFESTSVLGTIYNTVKS 873
+ES VLG ++ + S
Sbjct: 1049 ERYYESDKVLGRLFRAIPS 1067
>gi|121713002|ref|XP_001274112.1| RNA-directed RNA polymerase, putative [Aspergillus clavatus NRRL 1]
gi|119402265|gb|EAW12686.1| RNA-directed RNA polymerase, putative [Aspergillus clavatus NRRL 1]
Length = 1313
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 59/124 (47%), Gaps = 17/124 (13%)
Query: 627 KLPVTESYYLMGTVDPTGILKSNEVCIIL----KDGQVSWEK-------VLVYRNPGLHF 675
K+P+ S Y DP G+L+ NEV +D Q +E VLV R P
Sbjct: 853 KVPL--STYAFCIADPYGVLQENEVHFGFSNNWRDAQGQFEDNLLDGMDVLVGRLPAHVP 910
Query: 676 GDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKH 735
DI +A + EL F K I FP G LA ++GGD+DGDM ++ + +++
Sbjct: 911 SDIQRRRAVWKPELRHF----KDVIVFPTAGDIPLAHMLSGGDYDGDMPWICWDQNMVQD 966
Query: 736 FKES 739
F+ S
Sbjct: 967 FRNS 970
>gi|452002294|gb|EMD94752.1| hypothetical protein COCHEDRAFT_1201293 [Cochliobolus heterostrophus
C5]
Length = 1666
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 98/252 (38%), Gaps = 48/252 (19%)
Query: 523 SLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDAR-------------- 568
+ EV+ S+ P + L I +L+ GVP+ D++ ++L+ R
Sbjct: 1068 TFEVLNYSSTPSPSELHSLFIPILADRGVPKEAISDLMFDSLEKERMNLLNVLQDTTKVH 1127
Query: 569 -GVFSNKRNALKVSFNYGGMDYDFTSARMIL----SGIS-LDEPYLQHRLSILMKEEKKS 622
V+ N N G + +L SG L PYL L + ++
Sbjct: 1128 EWVYRNGANTKLREETPGRAGQPASLEEKVLNLLESGFDPLKFPYLAQNLESFILS-RQI 1186
Query: 623 LQAGKLPV--TESYYLMGTVDPTGILKSNEVCIILKDGQVSWE----------------K 664
Q KL V +S +L G DP G+L E+ ++ SW
Sbjct: 1187 FQEAKLRVLLPKSTFLYGVADPKGVLNPGEIQVLF-----SWPFLDETTNERYLELRDLN 1241
Query: 665 VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMY 724
VLV R+P DI ++ EL V + F G LA ++ GGD+DGD++
Sbjct: 1242 VLVARHPACRRSDIQKVRTVIHPELSHLVDVA----VFSSKGSFPLAGKLQGGDYDGDIF 1297
Query: 725 FVSRNPELLKHF 736
++ L++ F
Sbjct: 1298 WICWENTLVQPF 1309
>gi|156390354|ref|XP_001635236.1| predicted protein [Nematostella vectensis]
gi|156222327|gb|EDO43173.1| predicted protein [Nematostella vectensis]
Length = 127
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 57/110 (51%), Gaps = 14/110 (12%)
Query: 627 KLPVTESYYLMGTVDPTGILKSNEVCII---------LKDGQVSWEKVLVYRNPGLHFGD 677
++ V S + G DP G L+ + C+ + + QV+ E V+V RNP + GD
Sbjct: 21 RILVPNSRVVFGVCDPFGELEYGQ-CVFHPTLYDEVRIAEYQVATE-VMVVRNPCYYPGD 78
Query: 678 IHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVS 727
I VLK VK L + + I FP G R ADE +GGD DGD +FVS
Sbjct: 79 IRVLKL--VKNLPQYAYLND-CIVFPTKGSRPHADESSGGDLDGDEFFVS 125
>gi|342881586|gb|EGU82475.1| hypothetical protein FOXB_07061 [Fusarium oxysporum Fo5176]
Length = 1387
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 13/121 (10%)
Query: 630 VTESYYLMGTVDPTGILKSNEVCIILK-----DGQ----VSWEKVLVYRNPGLHFGDIHV 680
+ S Y TVD TG L+ EV + DG+ + +LV R P DI
Sbjct: 915 IPRSTYAFMTVDFTGTLEEGEVQLAFSSKFQADGESDTLLDGIDILVARAPAHFVSDIQK 974
Query: 681 LKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESE 740
+KA + L+ K I F G LAD ++GGD+DGD+ ++ +P+++ +F +
Sbjct: 975 VKAVFRPNLKRL----KDVIVFSSKGKSPLADMLSGGDYDGDLAWICWDPDVVNNFHNAP 1030
Query: 741 R 741
+
Sbjct: 1031 K 1031
>gi|156058730|ref|XP_001595288.1| hypothetical protein SS1G_03377 [Sclerotinia sclerotiorum 1980]
gi|154701164|gb|EDO00903.1| hypothetical protein SS1G_03377 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1390
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 22/156 (14%)
Query: 603 LDEPYLQHRLSILMKEEKKSLQAG--------KLPVTESYYLMGTVDPTGILKSNEVCII 654
LD + +L +M+ KK+ + V +S + D G+L+ NEV +
Sbjct: 843 LDAGFDPRKLHYIMELAKKAFDMKCEELKERLNITVAKSTKVYMVPDFWGVLEPNEVHLN 902
Query: 655 ----------LKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPC 704
L D Q+ VLV RNP + DI + A EL K I F
Sbjct: 903 FSSFVDNESGLSDTQLENVDVLVARNPAHYPSDIQRVTAVSKHELRHL----KDVIVFST 958
Query: 705 NGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESE 740
G SLAD+++GGD+DGD+ +V +P +++ F ++
Sbjct: 959 KGYPSLADKLSGGDYDGDIAWVCWDPAIVESFANAD 994
>gi|409079756|gb|EKM80117.1| hypothetical protein AGABI1DRAFT_127795 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1114
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 15/119 (12%)
Query: 627 KLPVTESYYLMGTVDPTGILKSNEV------CIILKDG---QVSWEKVLVYRNPGLHFGD 677
+LP + +++ DP+G L+SNEV + DG + VL+ R+P D
Sbjct: 667 ELPFSAGAWIIP--DPSGCLESNEVFFQCSRSLPALDGTETHIITGDVLITRDPCRLPTD 724
Query: 678 IHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHF 736
+ KA V EL + K I GPR AD +AGGD+DGD + PEL++ F
Sbjct: 725 VQKWKAIDVPELHQY----KDVIILSVQGPRRAADWLAGGDYDGDKAKLIWQPELVQDF 779
>gi|347841952|emb|CCD56524.1| hypothetical protein [Botryotinia fuckeliana]
Length = 461
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 97/216 (44%), Gaps = 27/216 (12%)
Query: 666 LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYF 725
LV RNP LH GD+ V++A + L + + FP +G R + +GGD DGD +F
Sbjct: 46 LVGRNPSLHPGDLRVVQAVNIPALHHL----RDVVVFPQSGERDVPSMCSGGDLDGDDFF 101
Query: 726 VSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLA 785
V + +L E + + A KR + + ++L K F+ K +
Sbjct: 102 VIWDKDLQPTEWNCEPMSYAALDPVALKRPV------VVTDLQKFFV---------KYMK 146
Query: 786 ADCWQAVMDRFLTLGDESAEEKAAMKE-NMLRLINIYYDALDAPKKSGIKVEVPEDLKVE 844
D ++ L D +K +K+ L+L ++ A+D K+G + + L
Sbjct: 147 NDSLPSIAHAHLAQAD---YQKQGIKDPKCLKLAELHSKAVDY-VKTGQPATMQKYLAPP 202
Query: 845 KFPCYMRR---DESVSFESTSVLGTIYNTVKSYEAV 877
K+P +M + S + S +LG +++ V+S + V
Sbjct: 203 KWPHFMEKIHQPASKQYHSQKILGQLHDKVESVDFV 238
>gi|342876307|gb|EGU77937.1| hypothetical protein FOXB_11547 [Fusarium oxysporum Fo5176]
Length = 821
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 23/203 (11%)
Query: 551 VPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQH 610
+PE+F I + F + ++ S+ GG+ D+ L+ + L
Sbjct: 282 IPEVFRKWIHETSF----TTFGDSQDG--TSWFVGGLPADWPGTMSFLADGGFEPRRLDF 335
Query: 611 RLSILMKEEKKSLQAGK----LPVTESYYLMGTVDPTGILKSNEVCIILK----DGQVSW 662
+++ +K+ + + + + +S + T+D G+L NEV + DGQ +
Sbjct: 336 LNTMMFNHQKQRWKQMETKLHIKIAKSTSALMTIDFQGVLAPNEVQLCFSPAFDDGQQTL 395
Query: 663 EK-----VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGG 717
+ VLV R P DI + A + EL F K I F G LA++++GG
Sbjct: 396 DDLGGFDVLVGRCPAHLPSDIQKVNAVFKPELRHF----KNVIIFSSLGDEPLANKLSGG 451
Query: 718 DFDGDMYFVSRNPELLKHFKESE 740
D+DGD +V + +++ +FK ++
Sbjct: 452 DYDGDKAWVCWDADIVDNFKSTD 474
>gi|119479435|ref|XP_001259746.1| RNA-directed RNA polymerase, putative [Neosartorya fischeri NRRL
181]
gi|119407900|gb|EAW17849.1| RNA-directed RNA polymerase, putative [Neosartorya fischeri NRRL
181]
Length = 1338
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 116/284 (40%), Gaps = 48/284 (16%)
Query: 500 IQIRPSMIKVK----ADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIF 555
IQI S +K++ A R+ D + + EVVK S L+ L+A+L +GG +
Sbjct: 715 IQISDSQLKIQPHPQAWREPIDDEKL-TFEVVKWSKPLHPVELNTQLLAILEHGGQVREY 773
Query: 556 FLDILRNAL----DDARGVFSNKRNALKVSF--NYGGMDYDFTSA--------------- 594
++ R + D V + AL S M D +S
Sbjct: 774 IAELTRAGIRAISQDFASVLESNSAALCRSLIQKIKPMADDGSSGMSQRMKRLEQWTAND 833
Query: 595 -----RMILSGISLDEPY-LQHRLSILMKEE-KKSLQAGKLPVTESYYLMGTVDPTGILK 647
R+ +G +L Y L+ RL +++ + + V S Y DP G+LK
Sbjct: 834 AEAIIRLTEAGFALRSFYPLRKRLGRCLRDLLDRYADELHIEVPLSTYAFCIADPYGVLK 893
Query: 648 SNEVCIIL----KDGQVSWEK-------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTS 696
+EV +D + +E VLV R P DI +A + EL F
Sbjct: 894 EDEVHFGFSNNWRDARGQFEDNLLDGVDVLVGRLPAHVPSDIQRRRAVWKPELRHF---- 949
Query: 697 KYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESE 740
K I FP G LA ++GGD+DGD ++ + +++ F+ S+
Sbjct: 950 KDVIVFPTTGDIPLAHMLSGGDYDGDTPWICWDQNIVQRFQNSD 993
>gi|327301211|ref|XP_003235298.1| hypothetical protein TERG_04355 [Trichophyton rubrum CBS 118892]
gi|326462650|gb|EGD88103.1| hypothetical protein TERG_04355 [Trichophyton rubrum CBS 118892]
Length = 1302
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 16/125 (12%)
Query: 621 KSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEK---------VLVYRNP 671
+ L+A K+ +S Y+ DP G+L+ +V + L D SWE VLV R P
Sbjct: 842 QKLEALKIKTPQSTYVYCIPDPYGVLEEGQVHLDLGD---SWEDGTTDLDGIDVLVARAP 898
Query: 672 GLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPE 731
DI +A + L K FP G LA ++GGD+DGD +V + E
Sbjct: 899 AHLPSDIQKCRAVFHPALRYL----KNVAIFPTKGEVPLASLLSGGDYDGDEVWVCWDQE 954
Query: 732 LLKHF 736
++K F
Sbjct: 955 IVKPF 959
>gi|255956165|ref|XP_002568835.1| Pc21g18410 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590546|emb|CAP96738.1| Pc21g18410 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1430
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 104/253 (41%), Gaps = 41/253 (16%)
Query: 523 SLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNAL----DDARGVFSNKR--- 575
+ EVV + Q L+ L+A+L YGG + + + R+ + DD V +
Sbjct: 856 TFEVVNWAKQLHPVDLNIQLLAILEYGGNVKEYIAKLTRDGVQSLYDDFLEVLRSNSPVV 915
Query: 576 -NALKVSFNYGGMDYDFTSARMILSGISLDEPYLQH--------------RLSI---LMK 617
AL G D AR + ++ D + H R+ I L
Sbjct: 916 CRALLQKLRPSGED-GTGKARRLEQWVTNDAESIIHFSEAGFAPRDFFPLRMKIRQYLTW 974
Query: 618 EEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIIL----KDGQVSWEK-------VL 666
+++++ K+ V S Y DP G+L +EV +D Q +E VL
Sbjct: 975 LLERNVEELKIQVPLSTYAYCIADPYGVLGPDEVHFGFSNNWRDPQGQFEDNLLDGVDVL 1034
Query: 667 VYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFV 726
V R P DI +A + EL F K I FP G LA ++GGD+DGD ++
Sbjct: 1035 VGRLPAHLPSDIQRRRAVWKSELRHF----KNVIVFPTTGEFPLAGMLSGGDYDGDTPWI 1090
Query: 727 SRNPELLKHFKES 739
+P +++ F+ S
Sbjct: 1091 CWDPMIVERFQNS 1103
>gi|409047033|gb|EKM56512.1| hypothetical protein PHACADRAFT_118286 [Phanerochaete carnosa
HHB-10118-sp]
Length = 965
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 18/155 (11%)
Query: 597 ILSGIS-LDEPYLQHRLSILMKEEKKS-LQAGKLPVTESYYLMGTVDPTGILKSNEV--- 651
I +G S L + +L + L L+K +S ++ + V ES DP G+L+ +E+
Sbjct: 500 IQAGFSPLTDIHLYNELKTLLKIVMESYIKDYHIIVPESAEAFIVPDPYGLLEEDEIHFK 559
Query: 652 --------CIILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFP 703
C L V + VL+YRNP D+ ++A E D++ I P
Sbjct: 560 SSQDLKDACEHLNPKSVVGD-VLIYRNPARVPSDVQKVRAVCRPEYADYLDV----IILP 614
Query: 704 CNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKE 738
G RSLA +AGGD+DGD+ +P+++ F++
Sbjct: 615 TKGRRSLASLLAGGDYDGDVATCIFDPQIVGDFRQ 649
>gi|429856861|gb|ELA31752.1| RNA-dependent RNA polymerase [Colletotrichum gloeosporioides Nara
gc5]
Length = 1365
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 15/119 (12%)
Query: 627 KLPVTESYYLMGTVDPTGILKSNEVCIILK---------DGQVSWEKVLVYRNPGLHFGD 677
K+P + +Y++ +D G+L+ NEV + D + VLV R+P D
Sbjct: 884 KIPNSAYFYMV--IDFWGVLEENEVHLCFSSKFQTESFSDSMLHGCDVLVARSPAHFVSD 941
Query: 678 IHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHF 736
+ +KA + EL K I F G LAD+++GGD+DGD +V P ++ +F
Sbjct: 942 VQRVKAVFKPELHAL----KDVIVFSAKGDIPLADKLSGGDYDGDKAWVCWEPAIVSNF 996
>gi|315048949|ref|XP_003173849.1| RNA directed RNA polymerase [Arthroderma gypseum CBS 118893]
gi|311341816|gb|EFR01019.1| RNA directed RNA polymerase [Arthroderma gypseum CBS 118893]
Length = 1245
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 56/125 (44%), Gaps = 16/125 (12%)
Query: 621 KSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEK---------VLVYRNP 671
K L A K+ +++S Y D G+L+ E+ + D +WE VLV R P
Sbjct: 775 KRLDAIKIKISKSTYAYCIPDHYGVLEEGEIYLDFGD---TWEDGTTDLDGIDVLVSRAP 831
Query: 672 GLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPE 731
D+ +A Y EL K F G LA ++GGD+DGD +V PE
Sbjct: 832 AHFPSDVQKCRAVYRPELRHL----KNVAIFSTKGKVPLASLLSGGDYDGDQVWVCWEPE 887
Query: 732 LLKHF 736
++K F
Sbjct: 888 IVKPF 892
>gi|406863804|gb|EKD16851.1| hypothetical protein MBM_05320 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1323
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 17/151 (11%)
Query: 600 GISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCII----- 654
GI E + + + E KK L + V S Y D G+L+ EV I
Sbjct: 811 GIRFMEDLAKKVFTKRIDELKKRLN---ITVGRSTYAYMVPDFWGVLEEGEVYIDFSSFV 867
Query: 655 -----LKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRS 709
L S ++LV R+P DI +KA +EL VG K I F G +
Sbjct: 868 DNVSGLSGASPSGSQILVARSPAHFVSDIQKVKAVIREEL---VGL-KDVIIFSVKGYPA 923
Query: 710 LADEIAGGDFDGDMYFVSRNPELLKHFKESE 740
LAD+++GGD+DGD+ +V P ++ +F+ +E
Sbjct: 924 LADKLSGGDYDGDVAWVCWEPAIVDNFETAE 954
>gi|343429506|emb|CBQ73079.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 1287
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 73/159 (45%), Gaps = 18/159 (11%)
Query: 596 MILSGISLDE-PYLQHRL-SILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCI 653
M+LSG ++ YL L I K ++ +PV S M DPTG L+ E+
Sbjct: 731 MLLSGFHPEKCAYLADLLVEIAALAMSKVIKRFAIPVARSAEAMVIPDPTGTLEEGEIQF 790
Query: 654 I------------LKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIF 701
L+ V +VLV R+P L DI ++A EL + K +
Sbjct: 791 RFSSDNIVDPDTRLRLTHVPEGQVLVTRHPCLLPTDIRKVRAVVRPELSLY----KDVVV 846
Query: 702 FPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESE 740
F G R LA ++GGD+DGD+ V P+L++ F+ ++
Sbjct: 847 FSTKGKRPLASLLSGGDYDGDLIRVFWEPKLVEPFENAD 885
>gi|339242799|ref|XP_003377325.1| RNA dependent RNA polymerase family protein [Trichinella spiralis]
gi|316973886|gb|EFV57430.1| RNA dependent RNA polymerase family protein [Trichinella spiralis]
Length = 1417
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 151/713 (21%), Positives = 275/713 (38%), Gaps = 148/713 (20%)
Query: 252 RELGDDNILLVKFDEELGGHRSSNNWNDSYSK--YNEIAREGILVGLRCYHFFVFKDGGK 309
R+ G D L V F +E G ++ ++ + K + +G+ +G R Y F G
Sbjct: 423 RQFGSDLALRVIFRDEGGTRIPASKFSLTSLKQIVTTVMMKGLAIGPRLYQFL----GWS 478
Query: 310 EEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSR 369
+ +D CYF V E R ++ SV MSR
Sbjct: 479 NSQLRDHG-----CYFYASTEQV-------------NVEEIRRWMGDFSSIRSVPKLMSR 520
Query: 370 LSLILSKTMKL-EVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALK 428
+ ++ + + F+ + E + + + D + +DG G +S LA
Sbjct: 521 MGQCFTQAFAITAIPFNPDSKEVLIETDIQSSDSKFCF--------SDGIGRMSTKLA-- 570
Query: 429 CPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGT 488
E +R EL P Q+R Y G KG
Sbjct: 571 ----------------EEVAERLEL--------------WPVPSAFQIR--YAG--FKGM 596
Query: 489 LLLNKKLPPQTIQI-RPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLS 547
L ++ +L + R SM K + ++LE+VK S QP + L+R LI +L
Sbjct: 597 LCVDPRLDGDVKMVFRQSMHKFHT-------EGAHTLEIVKHS-QPCEVNLNRPLIMILD 648
Query: 548 Y----GGVP-----EIFFLDILRNALDDARG--VFSNKRNALKVSFNYGGMDYDFTSARM 596
GVP + + +L + + +F ++ ++ + + M+++ ++
Sbjct: 649 QVAFKEGVPVNGRVQNRIMQLLDQQICELSQMLLFEDQAKSVLSATMHSEMNFE----KL 704
Query: 597 ILSGISL-DEPYLQHRLSILMK-EEKKSLQAGKLPVTESY--YLMGTVDPTGILKSNEVC 652
+G +EP+ ++ L K + K+ L K+ + S + G +D G+L +V
Sbjct: 705 ADAGFRFTEEPFFRNMLLACYKFKVKEKLFRMKIEIDPSLGRTMYGVMDELGLLHPGQVF 764
Query: 653 I-----ILKDGQ---VSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPC 704
I IL+ G+ V KV+V ++P + GD+ +L A + E+ ++ I FP
Sbjct: 765 IQCSANILRPGEDKRVITGKVMVTKSPSVVPGDVRILTAVDL-EIYHYLND---VIVFPK 820
Query: 705 NGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSA-------NKRLID 757
G R + D++AG D DGD Y V + EL+ F + M K +S+ + +++D
Sbjct: 821 IGYRPVTDQMAGSDLDGDEYAVIWDEELM--FCNNYPAMLYEKVISSEIDGDITSDKMVD 878
Query: 758 FSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRL 817
F L + S+ S++ + D + A K +M
Sbjct: 879 FFLHYICSDSIGRIAIAHLVASDSYGIFDDVSNCI----------------ARKHSM--- 919
Query: 818 INIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAV 877
A+D PK ++ D K+P Y+ + + + S +LG++Y V ++
Sbjct: 920 ------AVDFPKSGVTPPKLENDEIPLKYPDYIPKCYNSLYRSKWLLGSLYRKVYMLNSI 973
Query: 878 -----DRSVTEIWKLPCFDDGVPEACMTKWKGYYDQYRWEMKEAIDKCTVERE 925
R VT P + K + + +Y+ E+ +D+ +E E
Sbjct: 974 AELSLARKVTTGKSDPHLKIAEAKNFEEKARAIFQRYKSELHSLLDEYGIENE 1026
>gi|116200327|ref|XP_001225975.1| hypothetical protein CHGG_08319 [Chaetomium globosum CBS 148.51]
gi|88179598|gb|EAQ87066.1| hypothetical protein CHGG_08319 [Chaetomium globosum CBS 148.51]
Length = 1176
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 108/268 (40%), Gaps = 38/268 (14%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P Q+R KG L ++ L + I IRPSM K D +D Q LE+ +
Sbjct: 614 PTCFQIR----QAGAKGMLAIDPGLGGKVICIRPSMSKF----DSTDKQ----LEICDMA 661
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRN-ALKVSFNYGGMDY 589
+ P L+R LI +L G P +FL++ L R + S N A + G
Sbjct: 662 SNPMPMVLNRQLIKILEDMGAPNQWFLNLQSRELQRLRTISSTVYNTASFLRAQRIGESI 721
Query: 590 DFTSARMILSGISLD---EPYLQHRL-SILMKEEKKSLQAGKLPVTESYYLMGTVDPTGI 645
+ + LD + +L+ + ++L+ E + ++PV L G +D TG
Sbjct: 722 RLHKFLRQIETMGLDYRRDDFLRGAVEAVLLSELRLLKHKARIPVRNGMTLFGIMDETGF 781
Query: 646 LKSNEVCIILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCN 705
LK EV + + D H + L S A
Sbjct: 782 LKEGEVYVTFDPEE-----------------DRHSQPPGPGRVLSSSAIASSSAS----G 820
Query: 706 GPRSLADEIAGGDFDGDMYFVSRNPELL 733
G RS +++++GGD DGD++ + +P ++
Sbjct: 821 GERSPSNQLSGGDLDGDVFHIIWDPAVV 848
>gi|426198482|gb|EKV48408.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
Length = 1114
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 57/119 (47%), Gaps = 15/119 (12%)
Query: 627 KLPVTESYYLMGTVDPTGILKSNEV------CIILKDG---QVSWEKVLVYRNPGLHFGD 677
+LP + +++ DP+G L SNEV + DG + VL+ R+P D
Sbjct: 667 ELPFSAGAWIIP--DPSGCLGSNEVFFQCSRSLPALDGTETHIITGDVLITRDPCRLPTD 724
Query: 678 IHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHF 736
+ KA V EL + K I GPR AD +AGGD+DGD + PEL++ F
Sbjct: 725 VQKWKAIDVPELHQY----KDVIILSVQGPRRAADWLAGGDYDGDKAKLIWQPELVQDF 779
>gi|224001686|ref|XP_002290515.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973937|gb|EED92267.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|225382108|gb|ACN89266.1| putative RNA-dependent RNA polymerase 1 [Thalassiosira pseudonana]
Length = 885
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 9/111 (8%)
Query: 635 YLMGTVDPTGILKSNEVCIILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELE---- 690
+L+G VDPT L N V + +G +++ V R+P D V++ K
Sbjct: 653 HLVGVVDPTNELPPNTVFVTGVNGGFGVDQIFVSRSPATEVSDGRVVELVNTKPFNMSQA 712
Query: 691 --DFVGTSKY-AIFF--PCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHF 736
D++G+ + AI F P G L + IA GD DGD YFV + LL+H
Sbjct: 713 NWDWLGSLPFGAIMFGNPEKGYCPLPECIANGDLDGDWYFVFWSEALLQHI 763
>gi|392595557|gb|EIW84880.1| RdRP-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 1235
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 154/731 (21%), Positives = 290/731 (39%), Gaps = 154/731 (21%)
Query: 210 EDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELG-DDNILLVKFDEEL 268
E RR+S SG+ YH I T +GPY+ Q+ +++ G +D+ L V+F +E
Sbjct: 394 EVRRISSA--SGRFFCYHVTI-TPTRMLLEGPYITQSNRVIRKYEGFEDHFLRVEFRDE- 449
Query: 269 GGHRSSNNWN---DSYS----KYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPV 321
R W+ D S + + + GI + R + F +
Sbjct: 450 --DRLQFRWDREVDGQSFLEDRVGGMLKNGIDIAGRHFTFLAYSSSA------------- 494
Query: 322 KCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSL---ILSKTM 378
+R S F++ + +S + ++ +F T+ + Y +R+ + L +
Sbjct: 495 ----LRSHSVWFVN--EEDFMSATNIRDSLGVF--AETIYQPSKYAARIGVSNGFLRFDL 546
Query: 379 KL----EVDFS----RINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCP 430
+ + FS + I + + + RD K+ + + TDG G IS +L
Sbjct: 547 HMFNLPQQAFSATDPSVKISKDQWKEIRD------IKNAQGQLFTDGVGTISRELG---- 596
Query: 431 TYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLL 490
V+++ C R++ AN P Q+R KG +
Sbjct: 597 RMVWEKLCEA---------RRDRGAN-----------SVIPSAYQIRFL----GFKGVVA 632
Query: 491 LNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGG 550
++++L + R SM R +D +E+V+ ++P + L+R L+ +L G
Sbjct: 633 IDEQLEGIMLCPRTSM------RKFADQTEHAEIEIVRAFDKPNQPNLNRPLVMVLEDSG 686
Query: 551 VPEIFFLDILRNALDDARGVFSNKRNALKV-SFNYGGMDYDFTSARMILSGI-------- 601
V + F+++L +A+ AR + + V N G Y + L +
Sbjct: 687 VDKGAFMELLDDAVAGARMAHDSVEKFVNVLRSNRLGFSYRLAHILLKLDALGLDLKSNS 746
Query: 602 ---SLDEPYLQHRLSILMKEEKKSLQA-GKLPVTESYYLMGTVD--PTGILKSNEVCIIL 655
SLD +L ++ + ++ ++P+ +SY L+G D P + +E L
Sbjct: 747 NQESLDTAFLARVRGCVINHVLRDIKHFARIPIPQSYQLVGVADEGPAYVKDGHENVYTL 806
Query: 656 KDGQV-----------SWEK--VLVYRNPGLHFGDIHVLKATYVKELEDFVGTS--KYAI 700
G++ W + ++ R+P +H GD+ + A + +
Sbjct: 807 PPGKIFACIQNFGEEPKWLEGPCVISRSPVVHPGDVQRVYAVGKPPANQLCLFEHLRNVV 866
Query: 701 FFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL--KHFKESE---RWMSTSKNLSANKRL 755
P GPR LA+ + GGD DGD+Y + LL +H ++ R T S +
Sbjct: 867 VLPSQGPRPLANCLGGGDLDGDLYEIIMFQRLLITEHSDPAQYEDRKPRTLDRPSTIDDV 926
Query: 756 IDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENM- 814
DF +E + S++ L + D+ + + D+S K ++++
Sbjct: 927 CDFVVEYIHSDVVGL---------------------ISDKHIIIADQS---KDGTRDDLC 962
Query: 815 LRLINIYYDALDAPKKSGIKVEV---PEDL---KVEKFPCYMRRDESVS-FESTSVLGTI 867
L+L +++ A+D P K+G V++ P +L K + + S+ +ES LG +
Sbjct: 963 LKLADLHSQAVDYP-KNGNPVDIRRLPRNLIPYKPDWHAAEVSSPRSLDYYESDRALGHM 1021
Query: 868 YNTVKSYEAVD 878
Y +V E D
Sbjct: 1022 YRSVTLEEIRD 1032
>gi|336470141|gb|EGO58303.1| hypothetical protein NEUTE1DRAFT_82729 [Neurospora tetrasperma FGSC
2508]
gi|350290166|gb|EGZ71380.1| RNA-dependent RNA polymerase [Neurospora tetrasperma FGSC 2509]
Length = 1402
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 14/144 (9%)
Query: 607 YLQHRLSILMKEEKKSLQAG-KLPVTESYYLMGTVDPTGILKSNEVCI----ILKDGQVS 661
YLQ L K + +L++ + V S Y+ D G+L+ NEV + +D + S
Sbjct: 890 YLQDIAWDLQKRKCDTLKSKLNIRVGRSAYIYMIADFWGVLEENEVHVGFSSKFRDEEES 949
Query: 662 WE-----KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAG 716
+ VLV R+P DI ++A + EL K I F G LA +++G
Sbjct: 950 FTLLSDCDVLVARSPAHFPSDIQRVRAVFKPELHSL----KDVIIFSTKGDVPLAKKLSG 1005
Query: 717 GDFDGDMYFVSRNPELLKHFKESE 740
GD+DGDM +V +P ++ F +E
Sbjct: 1006 GDYDGDMAWVCWDPAIVDGFVNAE 1029
>gi|242207403|ref|XP_002469555.1| predicted protein [Postia placenta Mad-698-R]
gi|220731359|gb|EED85204.1| predicted protein [Postia placenta Mad-698-R]
Length = 1264
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 28/130 (21%)
Query: 627 KLPVTESYYLMGTVDPTGILKSNEV-----------------CIILKDGQVSWEKVLVYR 669
K+ V S DP G+L+ +E+ II D VL+YR
Sbjct: 826 KIAVPRSAEAFIIPDPYGVLEESEIHFKSTQNLQDPLEESNPTIITGD-------VLIYR 878
Query: 670 NPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRN 729
NP D+ +KA +L+ +V I P G RSLA+ +AGGD DGD+ +
Sbjct: 879 NPTRVPSDVRKVKAVSHPKLDKYVNV----IVLPVKGSRSLANILAGGDVDGDVCTCIFD 934
Query: 730 PELLKHFKES 739
P+L+ F+ S
Sbjct: 935 PDLVDSFENS 944
>gi|170117206|ref|XP_001889791.1| RNA-directed RNA polymerase [Laccaria bicolor S238N-H82]
gi|164635257|gb|EDQ99567.1| RNA-directed RNA polymerase [Laccaria bicolor S238N-H82]
Length = 1690
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 96/397 (24%), Positives = 160/397 (40%), Gaps = 89/397 (22%)
Query: 360 VSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTG 419
+ ++A R+ L+ S ++D+ R++ + I D P +DG+ L +DG G
Sbjct: 147 IMNIAKRAKRIGLLFSSA---QIDY-RLDPKYIADIPD--------IQDGDELF-SDGCG 193
Query: 420 FISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLF 479
IS+ L++ K F +V T P + Q+R
Sbjct: 194 LISKRLSIAL--------------------SKAKRITFRNVRYT-------PTVFQIRYL 226
Query: 480 YNGTAVKGTLLLNKKLPPQ---TIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKT 536
KG L+L+ +L + Q R SM K D ++ VV S
Sbjct: 227 ----GYKGVLMLHPQLDAEGKHLAQFRKSMKKFTTTTD-------HTFSVVGHSRPYTFG 275
Query: 537 YLSRNLIALLSYGGVPEIFFLD-------ILRNALDDARGVFSNKRNALKVSFNYGGMDY 589
L+ ++I LLS GV L+ LRNA +D V F +D
Sbjct: 276 RLNNDIIVLLSCLGVTNEKLLNKQDEYFQWLRNATEDPTAA---------VDF-LSCIDQ 325
Query: 590 DFTSARMILSGISLDEPYLQHRLSILM-------KEEKKSLQAGKLPVTESYYLMGTVDP 642
+ +++L+GI ++P + + L +E++ ++ ++ + ES L G DP
Sbjct: 326 YPLAGKVLLNGI--NDPDVAKEIRRLQLGEIARYTDEREKFKS-RMIIRESRRLFGVCDP 382
Query: 643 TGILKSNEVCIILKDGQVSWEK-----VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSK 697
+LK EV I + + VL+ RNP LH GD L+A + +L V
Sbjct: 383 FQVLKEGEVHIRIMASRKGPSTPIHGDVLIVRNPCLHPGDCLKLRAVHNDKLSHLVDCLV 442
Query: 698 YA-IFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
+A + P G + +GGD DGD + V + +L+
Sbjct: 443 FASVARP--GHHAAPSMSSGGDLDGDEFLVCWDKDLV 477
>gi|242216295|ref|XP_002473956.1| predicted protein [Postia placenta Mad-698-R]
gi|220726900|gb|EED80835.1| predicted protein [Postia placenta Mad-698-R]
Length = 1264
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 14/123 (11%)
Query: 627 KLPVTESYYLMGTVDPTGILKSNEVCII----LKDG------QVSWEKVLVYRNPGLHFG 676
K+ V S DP G+L+ ++ LKD + VL+YRNP
Sbjct: 826 KITVPRSAEAFIIPDPYGVLEEGQIHFKSTQNLKDPLEESNPTIVTGDVLIYRNPTRVPS 885
Query: 677 DIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHF 736
D+ +KA +L+ +V I P G RSLA+ +AGGD DGD+ +P+L+ F
Sbjct: 886 DVRKVKAVSHPKLDKYVNV----IVLPVKGSRSLANILAGGDVDGDVCTCIFDPDLVDSF 941
Query: 737 KES 739
+ S
Sbjct: 942 ENS 944
>gi|392570629|gb|EIW63801.1| hypothetical protein TRAVEDRAFT_138069 [Trametes versicolor
FP-101664 SS1]
Length = 1030
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 16/122 (13%)
Query: 628 LPVTESYYLMGTVDPTGILKSNEVCI-ILKDGQVSWEK---------VLVYRNPGLHFGD 677
+P++ +++ DP G+LK E+ KD + + E VL+YRNP D
Sbjct: 574 IPLSAEAFIV--PDPYGVLKPGEIHFRSSKDLKSALEDLNPNILLGDVLIYRNPNRLPSD 631
Query: 678 IHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFK 737
+ + A + L D+ I P GP S A +AGGD+DGD+ +P L++ F
Sbjct: 632 VQKVTAVQHELLADYADV----IVLPSRGPCSFASMLAGGDYDGDVCVCIYDPRLVRDFN 687
Query: 738 ES 739
S
Sbjct: 688 NS 689
>gi|392886219|ref|NP_001250556.1| Protein RRF-1, isoform b [Caenorhabditis elegans]
gi|345107385|emb|CCD31066.1| Protein RRF-1, isoform b [Caenorhabditis elegans]
Length = 1520
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 36/155 (23%)
Query: 627 KLPVTESYYLMGTVDPTGILKSNEVCII-----------------LKDGQVSWEKVLVYR 669
++P ++G VD TG L+ ++ + + ++ VL+ +
Sbjct: 762 QIPSELGRSMLGVVDETGRLQYGQIFVQYTKNYKKKLPPRDSNNKVHGSEIVTGTVLLTK 821
Query: 670 NPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRN 729
NP + GD+ + +A + EL + FP +GPR DE+AG D DGD Y V +
Sbjct: 822 NPCIVPGDVRIFEAVDIPELHHMCD----VVVFPQHGPRPHPDEMAGSDLDGDEYSVIWD 877
Query: 730 PELLKHFKESERWMSTSKNLSANKRLIDFSLEELE 764
ELL L N+ DF++E+++
Sbjct: 878 QELL---------------LERNEEPFDFAVEKIK 897
>gi|302690464|ref|XP_003034911.1| hypothetical protein SCHCODRAFT_255915 [Schizophyllum commune H4-8]
gi|300108607|gb|EFJ00009.1| hypothetical protein SCHCODRAFT_255915 [Schizophyllum commune H4-8]
Length = 1237
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 91/431 (21%), Positives = 172/431 (39%), Gaps = 84/431 (19%)
Query: 500 IQIRPSMIKVKA-DRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGV------- 551
+++RPSM K + + D+ + +E+ + P + ++ L+ +L GV
Sbjct: 667 MRLRPSMRKFDSKEEDMWEA----DIEIARHFAYPNNMFTNKALVTVLENLGVGCDQFEK 722
Query: 552 ---PEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGI------- 601
+ ++ + + +D R V + N L +F + +F + + + G
Sbjct: 723 LQQSAVASVERIHDDIDAWRDVL--RSNNLCRTFRLAHILDNFVAMGLEMKGTPSRPRRA 780
Query: 602 ---SLDEPYLQH-----RLSILMKEEKKSLQAGKLPVTESYYLMGTVD--PTGILKSNEV 651
D P+ + R++IL ++ K + G + +SY L+G D P I E
Sbjct: 781 PLPGFDSPFFKKIREVARMAIL-RDIKHDARFG---IPDSYKLVGIADEGPAYIKAGKEN 836
Query: 652 CIILKDGQV------------SW--EKVLVYRNPGLHFGDI---HVLKATYVKELEDFVG 694
L D ++ W ++ R+P H GD+ H + L F G
Sbjct: 837 VYCLGDREIYACVQRTEGEDPVWLEGNCIISRSPVTHVGDVQRVHAIGRPPADMLSSF-G 895
Query: 695 TSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKR 754
K + P G RSL ++GGD DGD+Y + +LL S ++
Sbjct: 896 KLKNLVVLPSVGDRSLCSMLSGGDLDGDLYDIIMCEDLL---------------YSQQEK 940
Query: 755 LIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENM 814
+DF E +L + C + + +D + DR L + D+S + E+
Sbjct: 941 PLDFDPGE-TFQLNRPATVDDICNFIVEYINSDVVGLLSDRLLVIADQS--KNGIFDEDC 997
Query: 815 LRLINIYYDALDAPKKSGIKVE-----VPEDLKVEKFPCY----MRRDESVSFESTSVLG 865
+++ + A+D PK+ GI V+ +P L +K + +R ++ + S LG
Sbjct: 998 VKIAKLCSQAVDYPKQ-GIPVDLENGNLPRPLMRQKPDWHAAEVIRPRDNDYYRSDKALG 1056
Query: 866 TIYNTVKSYEA 876
+Y ++ E
Sbjct: 1057 RLYRNIQIREV 1067
>gi|392886217|ref|NP_001250555.1| Protein RRF-1, isoform a [Caenorhabditis elegans]
gi|8886070|gb|AAF80368.1|AF159144_1 RRF-1 [Caenorhabditis elegans]
gi|14530419|emb|CAC42290.1| Protein RRF-1, isoform a [Caenorhabditis elegans]
Length = 1601
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 36/155 (23%)
Query: 627 KLPVTESYYLMGTVDPTGILKSNEVCII-----------------LKDGQVSWEKVLVYR 669
++P ++G VD TG L+ ++ + + ++ VL+ +
Sbjct: 843 QIPSELGRSMLGVVDETGRLQYGQIFVQYTKNYKKKLPPRDSNNKVHGSEIVTGTVLLTK 902
Query: 670 NPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRN 729
NP + GD+ + +A + EL + FP +GPR DE+AG D DGD Y V +
Sbjct: 903 NPCIVPGDVRIFEAVDIPELHHMCD----VVVFPQHGPRPHPDEMAGSDLDGDEYSVIWD 958
Query: 730 PELLKHFKESERWMSTSKNLSANKRLIDFSLEELE 764
ELL L N+ DF++E+++
Sbjct: 959 QELL---------------LERNEEPFDFAVEKIK 978
>gi|425774605|gb|EKV12907.1| RNA-directed RNA polymerase, putative [Penicillium digitatum Pd1]
gi|425776464|gb|EKV14681.1| RNA-directed RNA polymerase, putative [Penicillium digitatum PHI26]
Length = 1445
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 627 KLPVTESYYLMGTVDPTGILKSNEVCIIL----KDGQVSWEK-------VLVYRNPGLHF 675
K+ V S Y DP G+L +EV +D Q +E VLV R P
Sbjct: 999 KIQVPLSTYAYCIADPYGVLGPDEVHFGFSNNWRDPQGQFEDNLLDGVDVLVGRLPAHLP 1058
Query: 676 GDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKH 735
DI KA + EL F K I FP G LA ++GGD+DGD ++ +P +++
Sbjct: 1059 SDIQRRKAVWKTELRHF----KDVIVFPTTGNFPLAGMLSGGDYDGDTPWICWDPIIVER 1114
Query: 736 FKES 739
F S
Sbjct: 1115 FHNS 1118
>gi|440633788|gb|ELR03707.1| hypothetical protein GMDG_06341 [Geomyces destructans 20631-21]
Length = 1330
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 15/124 (12%)
Query: 628 LPVTESYYLMGTVDPTGILKSNEVCIILK-----------DGQVSWEKVLVYRNPGLHFG 676
+ V S Y++ VD GIL EV + D +S +LV R+P +
Sbjct: 872 ISVGRSAYMLMVVDFAGILGPREVHVGFSTAFKDESTDFCDTILSNMDILVARSPAHYTS 931
Query: 677 DIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHF 736
DI ++A + EL K I F G LA E++GGD+DGD+ +V E++ F
Sbjct: 932 DIQKVRAVFKPELSAL----KDVIVFSTRGDFPLAGELSGGDYDGDIAWVCWQTEIVSEF 987
Query: 737 KESE 740
+ ++
Sbjct: 988 ENAK 991
>gi|341879478|gb|EGT35413.1| hypothetical protein CAEBREN_30970 [Caenorhabditis brenneri]
Length = 1948
Score = 53.5 bits (127), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 15/150 (10%)
Query: 590 DFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPV--TESYYLMGTVDPTG--- 644
DF+ R+ L +++ P R + +E LQ G++ V TE+ + P+G
Sbjct: 1024 DFSMMRL-LKKVNIPIPSNVGRSMFGVTDETGLLQYGQVFVQYTEN---VNNKHPSGVSG 1079
Query: 645 -ILKSNEVCIILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFP 703
ILK + K +S ++V + P + GD+ + +A + EL + I FP
Sbjct: 1080 KILKGKSNFLSFKIQFIS-GPLMVTKFPSMCEGDVRMYEAVDIPELRHL----ENVIVFP 1134
Query: 704 CNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
NGPRS+ DE+AG D DGD Y V +P L
Sbjct: 1135 QNGPRSMPDEMAGSDLDGDEYAVIWDPFLF 1164
>gi|46117554|ref|XP_384795.1| hypothetical protein FG04619.1 [Gibberella zeae PH-1]
Length = 1079
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 83/176 (47%), Gaps = 23/176 (13%)
Query: 581 SFNYGGMDYDFTSARMILSGISLDEPYLQ--HRLSI--LMKEEKKSLQAGKLPVTESYYL 636
S+ GG+ + LS + +L+ H L+ + + K + + ++ +++S +
Sbjct: 549 SWFIGGLPKSWAEQMSFLSDGGFEPLHLRYLHNLTTNHMESQWKNTKEKMRIEISQSTWA 608
Query: 637 MGTVDPTGILKSNEVCIIL----KDGQVSWEK--------VLVYRNPGLHFGDIHVLKAT 684
+ VD G+L +EV + DG +EK V+V R P DI +KA
Sbjct: 609 LMVVDFQGVLGPDEVQLCFSSPFNDG---FEKRYDLEGFDVIVARCPAHLPSDIQKVKAV 665
Query: 685 YVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESE 740
+ EL K + FP G LA +++GGD+DGD ++ + +++ +F+ SE
Sbjct: 666 FKPELRHL----KDVVVFPFVGQEPLAGKLSGGDYDGDKAWICWDADIVDNFRNSE 717
>gi|401885543|gb|EJT49653.1| hypothetical protein A1Q1_01210 [Trichosporon asahii var. asahii
CBS 2479]
Length = 957
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 83/208 (39%), Gaps = 17/208 (8%)
Query: 534 RKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNA--LKVSFNYGGMDYDF 591
++ +LSR + ++++ GVP+ F + A+ +ARG+ A LK + F
Sbjct: 501 KRAHLSRQAVVIMNHLGVPDAVFESLFILAMREARGLLKRSATAGLLKEGLSLVSQHTHF 560
Query: 592 TSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEV 651
+ + G D L + ++ +L V +S LMG D +L +EV
Sbjct: 561 PVSELYSFGFKTDPMLLDICRATAVRLLSDYRHNARLQVDQSVKLMGIADELNVLSEHEV 620
Query: 652 CIILKD------GQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCN 705
D V + R+P LH GDI ++ A EL + I F
Sbjct: 621 FCQYDDPDSSDGPNVVLGACAIMRDPVLHPGDIQLVHAVDRPELHHL----RNVIVFSVQ 676
Query: 706 GPRSLADEIAGGDFDGDMYFVSRNPELL 733
G ++ G+ GD Y + +P L+
Sbjct: 677 G-----QPLSRGNLAGDQYSLIWDPVLI 699
>gi|406693965|gb|EKC97304.1| hypothetical protein A1Q2_08384 [Trichosporon asahii var. asahii
CBS 8904]
Length = 945
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 83/208 (39%), Gaps = 17/208 (8%)
Query: 534 RKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNA--LKVSFNYGGMDYDF 591
++ +LSR + ++++ GVP+ F + A+ +ARG+ A LK + F
Sbjct: 489 KRAHLSRQAVVIMNHLGVPDAVFESLFILAMREARGLLKRSATAGLLKEDLSLVSQHTHF 548
Query: 592 TSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEV 651
+ + G D L + ++ +L V +S LMG D +L +EV
Sbjct: 549 PVSELYSFGFKTDPMLLDICRATAVRLLSDYRHNARLQVDQSVKLMGIADELNVLSEHEV 608
Query: 652 CIILKD------GQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCN 705
D V + R+P LH GDI ++ A EL + I F
Sbjct: 609 FCQYDDPDSSDGPNVVLGACAIMRDPVLHPGDIQLVHAVDRPELHHL----RNVIVFSVQ 664
Query: 706 GPRSLADEIAGGDFDGDMYFVSRNPELL 733
G ++ G+ GD Y + +P L+
Sbjct: 665 G-----QPLSRGNLAGDQYSLIWDPVLI 687
>gi|403411358|emb|CCL98058.1| predicted protein [Fibroporia radiculosa]
Length = 1270
Score = 53.1 bits (126), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 54/108 (50%), Gaps = 16/108 (14%)
Query: 641 DPTGILKSNEVCII----LKDG-------QVSWEKVLVYRNPGLHFGDIHVLKATYVKEL 689
DP G+L+ ++ I LKD ++ E VL+YRNP D+ + A +L
Sbjct: 830 DPYGVLEEGQIQFIATQNLKDPLEDPMPMAITGE-VLLYRNPARVPSDVRKVIAVVHPKL 888
Query: 690 EDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFK 737
++V I P G RSLA+ +AGGD DGD+ P L+K F+
Sbjct: 889 VEYVNV----IVLPTKGKRSLANILAGGDVDGDVAVCIYEPSLVKPFR 932
>gi|408399167|gb|EKJ78292.1| hypothetical protein FPSE_01753 [Fusarium pseudograminearum CS3096]
Length = 1388
Score = 52.8 bits (125), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 14/135 (10%)
Query: 617 KEEKKSLQAG-KLPVTESYYLMGTVDPTGILKSNEVCIILK-----DGQ----VSWEKVL 666
K + + L+A + + S Y VD TG L+ EV + DG+ + +L
Sbjct: 899 KRQAEQLKAKMNIKIPRSAYAFMVVDFTGTLEEGEVQLAFSSKFQADGESDTLLDDIDIL 958
Query: 667 VYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFV 726
V R P D+ ++A + L+ K I F G LAD ++GGD+DGD +V
Sbjct: 959 VARAPAHFVSDVQKVRAVFRPNLKRL----KDVIVFSSKGKSPLADMLSGGDYDGDQAWV 1014
Query: 727 SRNPELLKHFKESER 741
+P+++++F + +
Sbjct: 1015 CWDPDIVRNFSNASK 1029
>gi|46124253|ref|XP_386680.1| hypothetical protein FG06504.1 [Gibberella zeae PH-1]
Length = 1372
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 14/135 (10%)
Query: 617 KEEKKSLQAG-KLPVTESYYLMGTVDPTGILKSNEVCIILK-----DGQ----VSWEKVL 666
K + + L+A + + S Y VD TG L+ EV + DG+ + +L
Sbjct: 883 KRQAEQLKAKMNIKIPRSAYAFMVVDFTGTLEEGEVQLAFSSKFQADGESDTLLDDIDIL 942
Query: 667 VYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFV 726
V R P D+ ++A + L+ K I F G LAD ++GGD+DGD +V
Sbjct: 943 VARAPAHFVSDVQKVRAVFRPNLKRL----KDVIVFSSKGKSPLADMLSGGDYDGDQAWV 998
Query: 727 SRNPELLKHFKESER 741
+P+++++F + +
Sbjct: 999 CWDPDIVRNFSNASK 1013
>gi|375281950|gb|AFA45121.1| RNA-directed RNA polymerase 2 [Plenodomus tracheiphilus]
Length = 1382
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 102/250 (40%), Gaps = 39/250 (15%)
Query: 604 DEPYLQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDG---- 658
D P+L L L+++ + + Q + P+ + +L+G DP +L+ EV I
Sbjct: 892 DSPFLARGLMQLIRQRQSVMEQKLRAPLGSATFLLGLADPENVLRPGEVHINFSSPFVDE 951
Query: 659 -------QVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLA 711
+ +VL+ R P DI ++ +L + + F G LA
Sbjct: 952 FNRQTYRHLDGLEVLIARQPACRQSDIQKVRVVAHPQLAHL----RDVVVFATRGQYPLA 1007
Query: 712 DEIAGGDFDGDMYFVSRNPELLKHFKESERWMS----TSKNLSANKRLIDFSLEELESEL 767
++ GGD+DGD +++ L++ FK + M+ + + + R ++ ++ +
Sbjct: 1008 GKLQGGDYDGDTFWICWESILVEPFKNAPAPMNPPDPAAYGIKKDHRRVNEVMDPDDPSS 1067
Query: 768 FKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENML------RLINIY 821
FL F A SL FL EK A +EN + L +++
Sbjct: 1068 IDGFLREAFTFRLAPSLLGKA-----TNFL--------EKVAYRENKIVSPSINALCDVH 1114
Query: 822 YDALDAPKKS 831
+DAPK++
Sbjct: 1115 DLLVDAPKQA 1124
>gi|238505018|ref|XP_002383738.1| RNA-directed RNA polymerase, putative [Aspergillus flavus NRRL3357]
gi|220689852|gb|EED46202.1| RNA-directed RNA polymerase, putative [Aspergillus flavus NRRL3357]
Length = 1131
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 54/122 (44%), Gaps = 15/122 (12%)
Query: 630 VTESYYLMGTVDPTGILKSNEVCI-----------ILKDGQVSWEKVLVYRNPGLHFGDI 678
V S Y DP G+LK +EV +D + VLV R P DI
Sbjct: 674 VPLSTYAFCIADPYGVLKEDEVHFGFSSNWRDPEGQFEDNLLDGMDVLVARLPAHVPSDI 733
Query: 679 HVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKE 738
+A + EL F K I FP G LA ++GGD+DGD +V + +++ F+
Sbjct: 734 QRRRAVWKPELRHF----KDVIVFPTVGTTPLAHMLSGGDYDGDTTWVCWDQNIVQKFRN 789
Query: 739 SE 740
S+
Sbjct: 790 SD 791
>gi|391867215|gb|EIT76465.1| hypothetical protein Ao3042_07438 [Aspergillus oryzae 3.042]
Length = 1260
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 54/122 (44%), Gaps = 15/122 (12%)
Query: 630 VTESYYLMGTVDPTGILKSNEVCI-----------ILKDGQVSWEKVLVYRNPGLHFGDI 678
V S Y DP G+LK +EV +D + VLV R P DI
Sbjct: 803 VPLSTYAFCIADPYGVLKEDEVHFGFSSNWRDPEGQFEDNLLDGMDVLVARLPAHVPSDI 862
Query: 679 HVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKE 738
+A + EL F K I FP G LA ++GGD+DGD +V + +++ F+
Sbjct: 863 QRRRAVWKPELRHF----KDVIVFPTVGTTPLAHMLSGGDYDGDTTWVCWDQNIVQKFRN 918
Query: 739 SE 740
S+
Sbjct: 919 SD 920
>gi|302893516|ref|XP_003045639.1| hypothetical protein NECHADRAFT_39599 [Nectria haematococca mpVI
77-13-4]
gi|256726565|gb|EEU39926.1| hypothetical protein NECHADRAFT_39599 [Nectria haematococca mpVI
77-13-4]
Length = 1363
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 14/137 (10%)
Query: 615 LMKEEKKSLQAG-KLPVTESYYLMGTVDPTGILKSNEVCIILK-----DGQ----VSWEK 664
+ K + L+A + + S Y VD TG L+ EV + DG+ +
Sbjct: 875 MQKRQADQLKAKMNIKIPRSTYAYMVVDFTGTLEEGEVQLAFSSKFQADGESDTLLDGID 934
Query: 665 VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMY 724
+LV R P DI +KA + L+ K I F G LAD ++GGD+DGD
Sbjct: 935 ILVARAPAHFVSDIQKVKAVFRPNLKRL----KDVIVFSSKGKSPLADLLSGGDYDGDKA 990
Query: 725 FVSRNPELLKHFKESER 741
+V +P+++ +F + +
Sbjct: 991 WVCWDPKIVSNFSNAAK 1007
>gi|392597508|gb|EIW86830.1| hypothetical protein CONPUDRAFT_115565 [Coniophora puteana
RWD-64-598 SS2]
Length = 1143
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 72/161 (44%), Gaps = 16/161 (9%)
Query: 592 TSARMILSGISLDE-PYLQHRLSILMKEE-KKSLQAGKLPVTESYYLMGTVDPTGILKSN 649
T+ ++ SG + E P L+ +L+ ++K + + KL V S DP GIL +
Sbjct: 662 TAMALLDSGFTPQECPVLRDKLTAVVKSTVDRHVARYKLDVPMSCIAWMVPDPFGILAPD 721
Query: 650 EVCI-------ILKDG---QVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYA 699
EV I + KDG Q VL+ R+P D+ + A EL +
Sbjct: 722 EVHIRSSQDNLLQKDGSKAQTVLGSVLLTRHPCKLPTDVQKVTAVQRGELAGYTDV---- 777
Query: 700 IFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESE 740
I G R AD +AGGD+DGD V P ++ F+ ++
Sbjct: 778 IVCSIQGDRRFADLLAGGDYDGDKAIVIWEPTIINTFRNAD 818
Score = 41.2 bits (95), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 15/105 (14%)
Query: 471 PLLMQVRLFYNGTAVKGTLLL------NKKLPPQTIQIRPSMIKVK--ADRDLSDGQTFN 522
P +Q R+ KG LL+ N P+ + +R S IK++ + + L+ GQ
Sbjct: 480 PTAIQCRI----AGAKGLLLMHPDDRENDATEPK-VWLRTSQIKIRYPSGQSLASGQ--R 532
Query: 523 SLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDA 567
+++V++TS+ + LS I L GVP F+D+L+ +LD++
Sbjct: 533 TIDVLRTSHMKTPSRLSPETIINLGENGVPHQIFVDLLKKSLDES 577
>gi|70997928|ref|XP_753696.1| RNA-directed RNA polymerase [Aspergillus fumigatus Af293]
gi|66851332|gb|EAL91658.1| RNA-directed RNA polymerase, putative [Aspergillus fumigatus Af293]
Length = 1318
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 15/122 (12%)
Query: 630 VTESYYLMGTVDPTGILKSNEVCIIL----KDGQVSWEK-------VLVYRNPGLHFGDI 678
V S Y DP G+LK +EV +D + +E VLV R P DI
Sbjct: 856 VPLSTYAFCIADPYGVLKEDEVHFGFSNNWRDARGQFEDNLLDGVDVLVGRLPAHVPSDI 915
Query: 679 HVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKE 738
+A + EL F K I FP G LA ++GGD+DGD ++ + +++ F+
Sbjct: 916 QRRRAVWKTELRHF----KDVIVFPTTGDIPLAHMLSGGDYDGDTPWICWDQNIVQRFQN 971
Query: 739 SE 740
S+
Sbjct: 972 SD 973
>gi|336268466|ref|XP_003348998.1| hypothetical protein SMAC_02019 [Sordaria macrospora k-hell]
gi|380094257|emb|CCC08474.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1403
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 13/120 (10%)
Query: 630 VTESYYLMGTVDPTGILKSNEVCI----ILKDGQVSWE-----KVLVYRNPGLHFGDIHV 680
V S Y+ D +L+ NEV + +D + S+ VLV R+P DI
Sbjct: 915 VGRSAYIYMIADFWDVLEENEVHVGFSSKFRDEEESFTLLSDCDVLVARSPAHFPSDIQR 974
Query: 681 LKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESE 740
++A + EL K I F G LA +++GGD+DGDM +V +PE++ F +E
Sbjct: 975 VRAVFKPELHML----KDVIIFSTKGDIPLAKKLSGGDYDGDMAWVCWDPEIVAGFVNAE 1030
>gi|323448091|gb|EGB03994.1| hypothetical protein AURANDRAFT_67557 [Aureococcus anophagefferens]
Length = 1507
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 60/142 (42%), Gaps = 11/142 (7%)
Query: 596 MILSGISLDEPYLQHRLSILMKEEKKSLQAG--------KLPVTESYYLMGTVDPTGILK 647
M+ +G +L+EP LQH L I K++ + + LP + + L DPT L
Sbjct: 692 MLRAGFALEEPLLQHCLRICAKQKLRGWKGDGDEDTSRIALPRSAAARLYVVADPTSSLA 751
Query: 648 SNEVCIILKDGQVSWE-KVLVYRNPGLHFGDIHVLKATYVKE--LEDFVGTSKYAIFFPC 704
+ + D +V E V + +P L D+ VL A LE + + P
Sbjct: 752 PGHCVVGVDDDEVKIEGPVAIMTDPTLAPEDVLVLDAVPPPPALLEALGRVPRGVLMLPT 811
Query: 705 NGPRSLADEIAGGDFDGDMYFV 726
A+ + GGD+DGD V
Sbjct: 812 TARHPTAEFLCGGDYDGDTAVV 833
>gi|159126570|gb|EDP51686.1| RNA-directed RNA polymerase, putative [Aspergillus fumigatus A1163]
Length = 1318
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 15/122 (12%)
Query: 630 VTESYYLMGTVDPTGILKSNEVCI-----------ILKDGQVSWEKVLVYRNPGLHFGDI 678
V S Y DP G+LK +EV +D + VLV R P DI
Sbjct: 856 VPLSTYAFCIADPYGVLKEDEVHFGFSNNWRDVRGQFEDNLLDGVDVLVGRLPAHVPSDI 915
Query: 679 HVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKE 738
+A + EL F K I FP G LA ++GGD+DGD ++ + +++ F+
Sbjct: 916 QRRRAVWKTELRHF----KDVIVFPTTGDIPLAHMLSGGDYDGDTPWICWDQNIVQRFQN 971
Query: 739 SE 740
S+
Sbjct: 972 SD 973
>gi|388853529|emb|CCF52928.1| uncharacterized protein [Ustilago hordei]
Length = 1363
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 67/159 (42%), Gaps = 18/159 (11%)
Query: 596 MILSGISLDE-PYLQHRL-SILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCI 653
M+L G PYL L I K+ ++ +PV S M DPTG L+ E+
Sbjct: 779 MLLVGFHPKSCPYLAELLVEIADNAMKRIIKRFTIPVPRSAEAMVMPDPTGTLEEGEIQF 838
Query: 654 I------------LKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIF 701
LK V VLV R+P L DI ++A EL T + +
Sbjct: 839 RFSGDRLLDPETRLKLNHVPEGDVLVTRHPCLLPTDIRKVRAVVRPELS----TYEDVVV 894
Query: 702 FPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESE 740
F G LA + GGD DGD V P+L++ F+ S+
Sbjct: 895 FSIKGQGPLASLLGGGDHDGDTIRVFWEPKLVEPFQNSD 933
>gi|322695803|gb|EFY87605.1| Rnai Polymerase [Metarhizium acridum CQMa 102]
Length = 685
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 108/274 (39%), Gaps = 55/274 (20%)
Query: 505 SMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNAL 564
S IK D + S +TF EV + S +PR L++ I +L + D + L
Sbjct: 59 SQIKWDCDHEDSHHRTF---EVKEWSKEPRPASLNQQFIPVLEARAINPYKMRDTISAHL 115
Query: 565 DDARGVF---SNKRNALKVSFNY-------GGMDYDFTSARMILSGISLDEP-------- 606
RG+ + +R A++ S GG + M G +P
Sbjct: 116 --RRGLLEELAAQRTAMEDSAELRLWLQQGGGSKPEGLDNSMAFLGCLPRDPKKVMAVLL 173
Query: 607 ----------YLQHRLSILMKEEKKSLQAG-KLPVTESYYLMGTVDPTGILKSNEV---- 651
YLQ ++ L+A K+ V S YL+ VD + L+ +EV
Sbjct: 174 DSGFHPKSCKYLQDLFRDAARDRAAFLKAKMKICVPCSAYLLMVVDFSSTLEEDEVHVSF 233
Query: 652 ---------CIILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFF 702
C L +G VLV R P DI +K +L K I F
Sbjct: 234 STKFQVDGFCDTLLEGM----DVLVARAPSHLPSDIQRVKVVSRPQLRHL----KDVIVF 285
Query: 703 PCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHF 736
G SLAD+++GGD+DGD +V + E++++F
Sbjct: 286 STKGRSSLADKLSGGDYDGDRAWVCWDQEIVENF 319
>gi|347839298|emb|CCD53870.1| RNA Polymerase RNA dependante [Botryotinia fuckeliana]
Length = 1007
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 22/156 (14%)
Query: 603 LDEPYLQHRLSILMKEEKKSLQAG--------KLPVTESYYLMGTVDPTGILKSNEVCII 654
LD + RL +M KKS + V +S + D G+L+ NEV +
Sbjct: 843 LDAGFDPRRLQYVMDLVKKSFDMKCAELKERLNITVAKSTKVYMVPDFWGVLEPNEVHLD 902
Query: 655 ----------LKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPC 704
L D Q+ VLV RNP + DI + A EL K I F
Sbjct: 903 FSSFVDNETGLSDIQLEDMDVLVARNPAHYPSDIQRVTAVNKHELRHL----KDVIVFST 958
Query: 705 NGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESE 740
G +LAD+++GGD+DGD+ +V + +++ F ++
Sbjct: 959 KGYPALADKLSGGDYDGDIAWVCWDRAIVESFANAD 994
>gi|353241158|emb|CCA72990.1| related to qde-1 RNA-dependent RNA polymerase (RdRP) [Piriformospora
indica DSM 11827]
Length = 1766
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 55/122 (45%), Gaps = 14/122 (11%)
Query: 628 LPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEK----------VLVYRNPGLHFGD 677
LPV S D TG LK EV K V E V+V R+P L D
Sbjct: 1290 LPVERSACGFLQPDFTGSLKEGEVFFSPKSAMVDSETGLAVQFIEGDVIVGRHPALLPTD 1349
Query: 678 IHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFK 737
+ +KA +V +L+DF G +F +G LA +AGGD+DGD + ++ FK
Sbjct: 1350 MRKVKAVFVPKLQDFKGI----LFCSIHGELPLASILAGGDYDGDEGTIIWEQRIVHPFK 1405
Query: 738 ES 739
+
Sbjct: 1406 NA 1407
>gi|302883308|ref|XP_003040555.1| hypothetical protein NECHADRAFT_106579 [Nectria haematococca mpVI
77-13-4]
gi|256721441|gb|EEU34842.1| hypothetical protein NECHADRAFT_106579 [Nectria haematococca mpVI
77-13-4]
Length = 936
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 665 VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMY 724
VLV R P DI +KA + EL K I FPC G + LA +++GG++DG+
Sbjct: 514 VLVGRCPAHLPSDIQKVKAVFRPELRHL----KDIIIFPCTGDKPLAQKLSGGNYDGNRA 569
Query: 725 FVSRNPELLKHFK 737
++ +P+++ +F+
Sbjct: 570 WICWDPDMVNNFE 582
>gi|389740950|gb|EIM82140.1| hypothetical protein STEHIDRAFT_124929 [Stereum hirsutum FP-91666
SS1]
Length = 982
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 62/144 (43%), Gaps = 15/144 (10%)
Query: 604 DEPYLQHRLSILMKEE-KKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCI-------IL 655
+ P L +L ++K K L K+ V + DP G+L E+ I
Sbjct: 497 NNPVLASKLEKVIKGAVNKRLARCKVEVPMACTAFIIPDPFGVLNEGEIHIKSSLTNLQR 556
Query: 656 KDGQVSWE---KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLAD 712
+DG + + VLV RNP DI + A + EL D+ I F G RSLA
Sbjct: 557 QDGLSTAQILGPVLVTRNPCKLPSDIQKVTAVFCAELRDY----DDVIVFSTKGRRSLAS 612
Query: 713 EIAGGDFDGDMYFVSRNPELLKHF 736
+A GD+DGD PE++ F
Sbjct: 613 LLATGDYDGDKAVAIWQPEIVDDF 636
>gi|302411624|ref|XP_003003645.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
gi|261357550|gb|EEY19978.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
Length = 1283
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 633 SYYLMGTVDPTGILKSNEVCIILK------DGQVS-----WEKVLVYRNPGLHFGDIHVL 681
S Y VD G+L+ E+ + DGQ S VLV R P DI +
Sbjct: 875 STYAKMVVDFKGVLEEGEIHLGFSTKFMDPDGQFSDTLLHGMDVLVARAPAHFPSDIQRV 934
Query: 682 KATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFK 737
+A + EL K I F G LAD ++GGD+DGD +V +P ++ F+
Sbjct: 935 RAVFRPELRHL----KDVIVFSIKGDSPLADLLSGGDYDGDQAWVCWDPAIVNSFQ 986
>gi|336367253|gb|EGN95598.1| hypothetical protein SERLA73DRAFT_162413 [Serpula lacrymans var.
lacrymans S7.3]
gi|336379975|gb|EGO21129.1| hypothetical protein SERLADRAFT_417518 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1199
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 106/504 (21%), Positives = 202/504 (40%), Gaps = 97/504 (19%)
Query: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
P Q+R KG + ++ +L + +RPSM K L + +E+ +
Sbjct: 608 PSAYQIRFL----GYKGMVAIDAQLTGVQMCLRPSMNKF-----LGKETEYAEIEIARAF 658
Query: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSN--KRNALKVSFNYGGMD 588
+P +L+R L+ +L G F+ + + + R + + +L N G +
Sbjct: 659 ERPNLPHLNRPLVMVLEDRGAKRDSFVKLQDEVIAETRMANDSIERFRSLLEEHNLG-HN 717
Query: 589 YDFTSARMILSGISL-----------DEPYLQHRLSILMKEEKKSLQ-AGKLPVTESYYL 636
+ + L+ + L D P+L S + +S++ ++ + +SY L
Sbjct: 718 FRLSPILQQLNALGLELKADQTKEAMDSPFLAQTRSCAINHVLRSVKHEARIQIPKSYML 777
Query: 637 MGTVD--PTGILKSNEVCIILKDGQVS------------WEKVL--VYRNPGLHFGDIHV 680
+G D P + + L +G++ W + L + R+P +H GD+
Sbjct: 778 VGVADEGPAYVNAGRDNVFCLPEGKIYACVQKPGDMEPIWLEGLCVISRSPVIHPGDVQR 837
Query: 681 LKATYVKELEDFVGTS--KYAIFFPCNGPRSLADEIAGGDFDGDMY-FVSRNPELLKHFK 737
+ A S K + P G RSLA + GGD DGD+Y + +P L+
Sbjct: 838 VYAIGKPPANKLCLFSHLKNVVVLPSVGARSLASCLGGGDLDGDLYEVIQHSPFLVTEHH 897
Query: 738 ESERWMSTS----KNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVM 793
+ + + S S + + DF +E + S++ L V
Sbjct: 898 DPAEYPAGSIFTLDRPSTIEDVCDFVVEYIHSDVVGL---------------------VS 936
Query: 794 DRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEV---PEDLKVEKFPCYM 850
D+ + + D+S + + +N L+L ++ A+D PK +GIKV++ P L K +
Sbjct: 937 DKHIVIADQS--KHGTLDQNCLKLSALHSQAVDYPK-NGIKVDISFLPRSLIPYKPDWHA 993
Query: 851 RRDESVS----FESTSVLGTIYNTV-----------KSYEAVDRSVTEIWK------LPC 889
+S +ES+ LG +Y + K YE +D ++++ K P
Sbjct: 994 AEVDSPRKTDYYESSRALGYLYRNITLEDLPTSVPRKPYEPLDDPISKVLKPRVKRQTPG 1053
Query: 890 FDDGVPEACMTKWKGYYDQYRWEM 913
+ D P+ ++ + + YR E+
Sbjct: 1054 YTD--PDGESSEMETIFQTYRDEL 1075
>gi|156374435|ref|XP_001629812.1| predicted protein [Nematostella vectensis]
gi|156216821|gb|EDO37749.1| predicted protein [Nematostella vectensis]
Length = 110
Score = 50.1 bits (118), Expect = 0.007, Method: Composition-based stats.
Identities = 37/108 (34%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 627 KLPVTESYYLMGTVDPTGILKSNEVCI---ILKDGQVSWE---KVLVYRNPGLHFGDIHV 680
++ V +S + G DP +L+ E I + + ++ KV V RNP H GD+ V
Sbjct: 5 RVLVPKSRMVFGVCDPYEVLRQGECYFRPSIFDEDEGDFQAANKVAVIRNPCYHPGDVRV 64
Query: 681 LKATYVK-ELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVS 727
LK K EL + I FP G R A E +G D DGD +FV+
Sbjct: 65 LKLVRNKPELNHL----RDCIVFPVRGRRPHALECSGADMDGDKFFVT 108
>gi|443920944|gb|ELU40764.1| calcium:hydrogen antiporter [Rhizoctonia solani AG-1 IA]
Length = 862
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 12/136 (8%)
Query: 470 PPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKT 529
PP Q+R+ KG + L+ KL + + +RPSM K +A+ DL SLE+ +
Sbjct: 716 PPPAFQIRI----GGSKGMVRLDPKLEGRVLCLRPSMTKFEAEHDL-------SLEIARA 764
Query: 530 SNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSF-NYGGMD 588
+L+R L+ LL GGV + FL+++++ L + + A K+ N G+
Sbjct: 765 FVTYSPCFLNRPLVVLLWSGGVEDDVFLNLMKDNLAETMSGMTTLGGAAKLLIANRLGVP 824
Query: 589 YDFTSARMILSGISLD 604
+ S LS + ++
Sbjct: 825 FQIASTLNRLSRLKIE 840
>gi|268565349|ref|XP_002639417.1| Hypothetical protein CBG04006 [Caenorhabditis briggsae]
Length = 797
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 666 LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYF 725
+V + P + GDI + +A + EL I FP +GPRS DE+AG D DGD Y
Sbjct: 1 MVTKFPTMCAGDIRMYEAVDIPELHHLTD----VIVFPQSGPRSQPDEMAGSDLDGDEYA 56
Query: 726 VSRNPELL 733
V +P L
Sbjct: 57 VIWDPILF 64
>gi|320587947|gb|EFX00422.1| RNA-dependent RNA polymerase [Grosmannia clavigera kw1407]
Length = 1358
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 80/190 (42%), Gaps = 38/190 (20%)
Query: 579 KVSFNYGGMDYDFTSARMILSG--------ISLDEPYLQHRLSILMKEEKKSLQAGKLPV 630
+V F G D D + +LSG + D Y + +EK +++ G+
Sbjct: 786 QVRFLGGLPDSDSEVVQFLLSGGFDPRVQKMIWDVAYKIQKAKCEKLKEKLNVRVGR--- 842
Query: 631 TESYYLMGTVDPTGILKSNEVCIILK----------------DGQVS-----WEKVLVYR 669
+ YL VD G+L+ EV + DG S VLV R
Sbjct: 843 --TAYLHMVVDFLGVLEEGEVQVCFSSKFQVDADSEPDERGDDGSFSDSLLVGTDVLVAR 900
Query: 670 NPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRN 729
+P D+ ++A + KEL K + F G LAD+++GGD+DGDM +V +
Sbjct: 901 SPAHFASDVQRVRAVFRKEL----CVLKDVVIFSRKGDSPLADKLSGGDYDGDMAWVCWD 956
Query: 730 PELLKHFKES 739
++++F +
Sbjct: 957 GRIVENFSNA 966
>gi|392575871|gb|EIW69003.1| hypothetical protein TREMEDRAFT_73994 [Tremella mesenterica DSM
1558]
Length = 1405
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 98/229 (42%), Gaps = 41/229 (17%)
Query: 351 RYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGE 410
RY + ++ +VA + +R ++ S ++ S +I I+D + D V + E
Sbjct: 601 RYNDLTLKPSQAVAKWAARPQILFSDSVP-ATTVSPESIMVIDDIITAEADA-VGHASTE 658
Query: 411 ALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEP 470
++ TDG G +SE LA + Y + + S+ RS
Sbjct: 659 QIL-TDGCGLMSEALASR--MYAHADI---RPSSGRSC---------------------- 690
Query: 471 PLLMQVRLFYNGTAVKGTLLL-----NKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLE 525
++Q+R+ KG L L + + P I +RPSMIK D + + +L+
Sbjct: 691 --VVQMRI----GGAKGLLALMSYQQSIEFPNVDIVLRPSMIKAIPDPRFAHDVSLLTLD 744
Query: 526 VVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNK 574
V++ + T LS IALL + GVP F D L LDD + F+ +
Sbjct: 745 VIRCESLKISTTLSAEPIALLVHNGVPAWLFCDRLIQGLDDLKDAFTTQ 793
>gi|302653254|ref|XP_003018456.1| RNA-directed RNA polymerase, putative [Trichophyton verrucosum HKI
0517]
gi|291182103|gb|EFE37811.1| RNA-directed RNA polymerase, putative [Trichophyton verrucosum HKI
0517]
Length = 1082
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 17/125 (13%)
Query: 621 KSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEK---------VLVYRNP 671
+ L+A K+ + S Y+ DP G+L+ ++ + L D SWE VLV R P
Sbjct: 623 QKLEALKIKIPHSTYVYCIPDPYGVLEEGQIHLDLGD---SWEDGTTDLDGIDVLVARAP 679
Query: 672 GLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPE 731
DI +A + L AIF G LA ++GGD+DGD +V + E
Sbjct: 680 AHLPSDIQKCRAVFHPALRYL---KHVAIF--TKGDVPLASLLSGGDYDGDEVWVCWDQE 734
Query: 732 LLKHF 736
++K F
Sbjct: 735 IVKPF 739
>gi|296817563|ref|XP_002849118.1| RNA-dependent RNA polymerase [Arthroderma otae CBS 113480]
gi|238839571|gb|EEQ29233.1| RNA-dependent RNA polymerase [Arthroderma otae CBS 113480]
Length = 1255
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 21/146 (14%)
Query: 627 KLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEK--------VLVYRNPGLHFGDI 678
K+ + +S Y+ DP G+L+ EV + D +WE +LV R P DI
Sbjct: 851 KIKIPKSTYVYCIADPYGVLEEGEVHLAPGD---NWEDTPDLDGIDILVARAPAHLPSDI 907
Query: 679 HVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKE 738
+A + L G + F G LA ++GGD+DGD + P L+ F+
Sbjct: 908 QKCRAIFHPALRHLKGVA----IFSTKGDVPLASLLSGGDYDGDEVWACWEPGLVNPFR- 962
Query: 739 SERWMSTSKN-----LSANKRLIDFS 759
++ + K + ++R++DFS
Sbjct: 963 NQPFQEIPKPEKYGLIKVSQRVVDFS 988
>gi|83773600|dbj|BAE63727.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1260
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 53/122 (43%), Gaps = 15/122 (12%)
Query: 630 VTESYYLMGTVDPTGILKSNEVCI-----------ILKDGQVSWEKVLVYRNPGLHFGDI 678
V S Y DP +LK +EV +D + VLV R P DI
Sbjct: 803 VPLSTYAFCIADPYRVLKEDEVHFGFSSNWRDPEGQFEDNLLDGMDVLVARLPAHVPSDI 862
Query: 679 HVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKE 738
+A + EL F K I FP G LA ++GGD+DGD +V + +++ F+
Sbjct: 863 QRRRAVWKPELRHF----KDVIVFPTVGTTPLAHMLSGGDYDGDTTWVCWDQNIVQKFRN 918
Query: 739 SE 740
S+
Sbjct: 919 SD 920
>gi|317151716|ref|XP_001824860.2| RNA-directed RNA polymerase [Aspergillus oryzae RIB40]
Length = 1291
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 53/122 (43%), Gaps = 15/122 (12%)
Query: 630 VTESYYLMGTVDPTGILKSNEVCI-----------ILKDGQVSWEKVLVYRNPGLHFGDI 678
V S Y DP +LK +EV +D + VLV R P DI
Sbjct: 834 VPLSTYAFCIADPYRVLKEDEVHFGFSSNWRDPEGQFEDNLLDGMDVLVARLPAHVPSDI 893
Query: 679 HVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKE 738
+A + EL F K I FP G LA ++GGD+DGD +V + +++ F+
Sbjct: 894 QRRRAVWKPELRHF----KDVIVFPTVGTTPLAHMLSGGDYDGDTTWVCWDQNIVQKFRN 949
Query: 739 SE 740
S+
Sbjct: 950 SD 951
>gi|241083173|ref|XP_002409051.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
gi|215492624|gb|EEC02265.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
Length = 597
Score = 48.9 bits (115), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 11/133 (8%)
Query: 486 KGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIAL 545
KG L LN L + +RPSM K D + ++LE+VK S PR L+R LI +
Sbjct: 470 KGMLCLNPCLQGDKLVLRPSMRKF-------DCSSSDNLELVKVS-APRLVCLNRPLITI 521
Query: 546 LSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLD- 604
L GVP FL + ++ + + AL+V +GG F A ++ G L
Sbjct: 522 LEQLGVPSRVFLCLQQSTVLQCTDALVCETTALQVLSGFGGTSLPF--AELVRGGFCLTR 579
Query: 605 EPYLQHRLSILMK 617
+P+++ L + K
Sbjct: 580 DPFVRSLLYAVYK 592
>gi|299747708|ref|XP_001837206.2| RNA-directed RNA polymerase [Coprinopsis cinerea okayama7#130]
gi|298407644|gb|EAU84823.2| RNA-directed RNA polymerase [Coprinopsis cinerea okayama7#130]
Length = 1221
Score = 48.5 bits (114), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 16/134 (11%)
Query: 610 HRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWE---KVL 666
+R++ LM S A +P T G + KS+ ++ +G ++ E VL
Sbjct: 708 YRMTALM-----SCSAWIIPDTRGVLEEGEI----YFKSSSRNLLRPNGTLTDELIGDVL 758
Query: 667 VYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFV 726
V RNP D+ +A + EL D V + G R AD +AGGD+DGD V
Sbjct: 759 VTRNPSKLPTDVQKWRAVHRPELRDLVDV----VVLSTKGARRAADWLAGGDYDGDKVTV 814
Query: 727 SRNPELLKHFKESE 740
+P+++ FK ++
Sbjct: 815 IWDPKIVDPFKTAD 828
>gi|241633128|ref|XP_002410399.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
gi|215503416|gb|EEC12910.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
Length = 756
Score = 48.5 bits (114), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 91/249 (36%), Gaps = 50/249 (20%)
Query: 344 GKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMK-LEVDFSRINIERIEDEPCRDKDG 402
G T R + +VA M+R+ S T + ++V N+E + D G
Sbjct: 516 GFTAESIRRWMGDFSAIPNVAKKMARMGQCFSSTEESVKVPLHGGNMEEVPD-----VVG 570
Query: 403 NVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVAR 462
V G+ +DG G IS L K C D
Sbjct: 571 GVHPVSGKEFTFSDGIGMISTSLMQKV--------CKKLD-------------------- 602
Query: 463 TESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFN 522
E P +Q+R Y G KG L +N +L + +R SM K +
Sbjct: 603 ----LAEVPSAIQIR--YAG--YKGMLCVNPELRGDKLVLRDSMRKFSCSNS-------D 647
Query: 523 SLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSF 582
SLEV+K S PR YL+R LI +L GVP FL + + + + AL+V
Sbjct: 648 SLEVIKVS-APRTVYLNRFLITILEQLGVPSRVFLCLQQKMMLTFADALVCESTALRVLC 706
Query: 583 NYGGMDYDF 591
Y G F
Sbjct: 707 TYVGGTLPF 715
>gi|426200996|gb|EKV50919.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
Length = 1000
Score = 48.5 bits (114), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 15/141 (10%)
Query: 608 LQHRLSILMKEE-KKSLQAGKLPVTESYYLMGTVDPTGILKSNEV------CIILKDGQV 660
L+ +LS ++++E + ++ +P+ ES DP GIL E+ ++ Q+
Sbjct: 565 LKDKLSFIIEQEIEHCVKKYAIPLAESLSGFVAPDPLGILDEGEIYFRSSESLLDPRTQL 624
Query: 661 SWE----KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAG 716
+++ V++ R P D+ +KA EL + I G RSLA ++G
Sbjct: 625 TYDIVTGDVILGRYPVRLASDLQKVKAVNKPELYRWPDV----IIVSTKGKRSLASLLSG 680
Query: 717 GDFDGDMYFVSRNPELLKHFK 737
GD DGD F+ R P++++ F+
Sbjct: 681 GDMDGDTLFMLREPDIVEPFR 701
>gi|241083169|ref|XP_002409050.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
gi|215492623|gb|EEC02264.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
Length = 167
Score = 48.5 bits (114), Expect = 0.021, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 52/122 (42%), Gaps = 20/122 (16%)
Query: 628 LPVTESYYLMGTVDPTGILKSNEVCIILKDGQV---SWEK-------------VLVYRNP 671
+P ++G +D T L+ EV + + Q+ S E VLV + P
Sbjct: 1 VPPNTGRNMLGVLDETQSLEYGEVFVQFTEHQLDDGSCEDDPKVPTTKILVGAVLVTKCP 60
Query: 672 GLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPE 731
LH GD+ A + L K I FP GPR +E+AG D DGD Y V +
Sbjct: 61 CLHPGDVRKFAAVDIPGLHHV----KDCIVFPAKGPRPHPNEMAGSDLDGDEYIVIWEKD 116
Query: 732 LL 733
LL
Sbjct: 117 LL 118
>gi|290994060|ref|XP_002679650.1| predicted protein [Naegleria gruberi]
gi|284093268|gb|EFC46906.1| predicted protein [Naegleria gruberi]
Length = 1124
Score = 47.8 bits (112), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 121/259 (46%), Gaps = 27/259 (10%)
Query: 497 PQTIQI--RPSMIKVKADRDLSDGQTFNSLEVVKTSNQP-RKTYLSRNLIALLSYGGVPE 553
P T++ RPSMIK + ++ + F+ L V + +T++S L + + +
Sbjct: 603 PDTVKCVARPSMIKFMGNSEVY--RHFDVLNVSRIQGGSINRTFMSCMLRRTTNKEAMQQ 660
Query: 554 IFFLDILRNALDDARGVFSNK--RNALKVS--FNYGGMDYDFTSARMILSGISLDEPYLQ 609
+F + +L + + K N+L + F+ G Y T ++L+G ++ P++
Sbjct: 661 LF-VKMLDEYIKSESNILDTKFLYNSLLSNEVFDNGDSVYR-TIKNLLLAGFGMENPFVY 718
Query: 610 HRLSILMKEEKKSLQAGKLPVTE----SYYLMGTVDPTGILKSNEV---CIILKDGQV-- 660
+ +K +S+ KL + S LMG +D +G L ++EV C+ L++ +
Sbjct: 719 KYIKKRIKARFQSMIDNKLCLKMKSKFSVTLMGVIDESGELNADEVYIPCLKLQEQLMRD 778
Query: 661 --SWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFP-CNGPRSLADEIAGG 717
++V+VYR+P + GDI LK +F+ + I FP +S +AG
Sbjct: 779 YYKLKEVIVYRHPLAYEGDIAKLKLRK-DPCNEFLASRSNVIVFPKVFKEKSPHQYLAG- 836
Query: 718 DFDGDMYFVSRNPELLKHF 736
DGD Y V + E+LK F
Sbjct: 837 --DGDAYEVVFDMEILKLF 853
>gi|406695038|gb|EKC98353.1| RNA-dependent RNA polymerase [Trichosporon asahii var. asahii CBS
8904]
Length = 1018
Score = 47.8 bits (112), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 76/312 (24%), Positives = 123/312 (39%), Gaps = 56/312 (17%)
Query: 468 GEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQ-TIQIRPSMIKVKADRDLSDGQTFNSLEV 526
GE P +Q RL KG L + I +RPS K ++ L V
Sbjct: 564 GEAPSALQFRL----GGAKGVLAYWPGMAGNDEILMRPSQTKFES--------RLKELNV 611
Query: 527 VKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNK--RNALKVSFNY 584
V+ + + +L+R I ++S GVP+ F + A G+ R+ K
Sbjct: 612 VRIAKY-QAAFLNRQFINIMSACGVPDALFEQLFVEATQAIEGLPDRAVLRDLTKDDLVL 670
Query: 585 GGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQ----AGKLPVTESYYLMGTV 640
+F ++I +G + + P +Q ++ E ++LQ ++ + YL+G
Sbjct: 671 FQQYTEFPMVQVIDAGFARN-PMIQDLARLV---EARALQDLKWRARVKLDMGVYLIGVA 726
Query: 641 DPTGILKSNEVCIILK-----DGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGT 695
D TG+LK EV + + + V V+V R P LH GD+ +A +L
Sbjct: 727 DETGLLKEGEVFVQYQVTENDEPVVVTGAVVVCRAPALHPGDVRTARAVDHPQLRHL--- 783
Query: 696 SKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRL 755
K + F G R L ++ P L++ NL AN R
Sbjct: 784 -KNVVVFSIKGARPLP----------NILHSHLGPAFLRY------------NL-ANCRR 819
Query: 756 IDFSLEELESEL 767
+DF+ EL +EL
Sbjct: 820 LDFAKTELTTEL 831
>gi|392597983|gb|EIW87305.1| hypothetical protein CONPUDRAFT_87147 [Coniophora puteana
RWD-64-598 SS2]
Length = 1075
Score = 47.8 bits (112), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 36/184 (19%)
Query: 612 LSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEK------- 664
+++++ + KSL +P+ ES DP G+LK E+ DG E
Sbjct: 638 VTMVIDDYVKSLH---IPILESAEAYIVPDPYGVLKEGEIYFRSSDGFKDPETGARFDIL 694
Query: 665 ---VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDG 721
VLV RNP D+ ++A ELE + I FP G RSLA + G G
Sbjct: 695 KGDVLVLRNPTRLPSDVQKVRAVTYPELEKYYDV----IIFPTCGARSLASYLGG----G 746
Query: 722 DMYFVSRNPELLKHFKES-------------ERWMSTSKNLSANKRLIDFSLEELESELF 768
D V + +L++ F + ER + T ++ +KR+ + E+E
Sbjct: 747 DTVLVVWDKQLVQPFNSTPLYEEPQGVRDAFERNVETVRDF--DKRIRGLPRADAEAEFQ 804
Query: 769 KLFL 772
K+ L
Sbjct: 805 KILL 808
>gi|390599418|gb|EIN08814.1| hypothetical protein PUNSTDRAFT_44349 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 1065
Score = 47.8 bits (112), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 24/134 (17%)
Query: 613 SILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEKVLVYRNPG 672
SILM K +LP++ + ++ T DPTG L E+ I + S + V+ G
Sbjct: 681 SILMNFVKPPRFKIELPMSCTAFI--TPDPTGTLDPGEIFI-----RSSHDNVI-----G 728
Query: 673 LH-------FGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYF 725
L G++ ++KA Y L + I G RSLA +AGGD+DGD F
Sbjct: 729 LDGIKTDTIIGEV-LVKAVYRPALHRYTNQ----IVISVKGDRSLASILAGGDYDGDKCF 783
Query: 726 VSRNPELLKHFKES 739
V+ +P +++ FK +
Sbjct: 784 VTWDPAIVEPFKNA 797
>gi|361124327|gb|EHK96429.1| putative RNA-dependent RNA polymerase 1 [Glarea lozoyensis 74030]
Length = 900
Score = 47.8 bits (112), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 663 EKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGD 722
+ VLV R+P DI +KA EL +G K I F G SLA +++GGD+DGD
Sbjct: 484 QDVLVARSPAHFVSDIQKVKAVAKVEL---IGL-KDVIVFSTKGNPSLAAKLSGGDYDGD 539
Query: 723 MYFVSRNPELLKHFKESE 740
+ ++ P ++ +F ++E
Sbjct: 540 LAWLCWEPSIVNNFVDAE 557
>gi|443921571|gb|ELU41160.1| RdRP domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 1096
Score = 47.8 bits (112), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 87/235 (37%), Gaps = 43/235 (18%)
Query: 636 LMGTVDPTGILKSNEV-CIILK--------DGQVSWEKVLVYRNPGLHFGDIHVL----- 681
L G VDP GIL EV C + D VLV RNP + D+ +
Sbjct: 692 LNGLVDPLGILDVGEVFCGFGRPVRDNSGTDISTVLGPVLVSRNPCILPSDMRKVSTEGI 751
Query: 682 ----------KATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPE 731
+ V+ E + I F G RSLA +AGGD+DGD +
Sbjct: 752 CGEIRAYSCSQVIAVECPELWAAGYTDVIVFSVKGERSLASMLAGGDYDGDTAILIWEEA 811
Query: 732 LLKHFKESERWMS---TSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAA-D 787
L+ F S + S + +N + +EE+ + F+ LN P +
Sbjct: 812 LVNQFTNSATHFADVDVSDHFVSNPK----RMEEIPPDDFRSVLNALLAPLMPNQVGMYG 867
Query: 788 CWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLK 842
W + L L D +RL N+ YD + + K+ V EDLK
Sbjct: 868 NWHMTAAKVLGLDDPET----------VRLGNV-YDPYEQDPRIVSKLSVIEDLK 911
>gi|171685170|ref|XP_001907526.1| hypothetical protein [Podospora anserina S mat+]
gi|170942546|emb|CAP68197.1| unnamed protein product [Podospora anserina S mat+]
Length = 1478
Score = 47.4 bits (111), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 665 VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMY 724
VLV R+P D+ ++A + +L K I F G LA++++GGD+DGDM
Sbjct: 1048 VLVARSPAHFASDVQRVRAVFKPQLHAL----KDVIVFSSKGNVPLAEKLSGGDYDGDMA 1103
Query: 725 FVSRNPELLKHF 736
+V +P ++++F
Sbjct: 1104 WVCWDPLIVENF 1115
>gi|393244711|gb|EJD52223.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 1372
Score = 47.4 bits (111), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 452 ELEANFSDV---ARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIK 508
+L + DV ++ Y P Q+R+ KG + ++ LP + + +RPSM K
Sbjct: 750 QLAKDIDDVLMEGKSRYEYNPVPKAYQIRI----GGSKGMIYVDPTLPGRKLLLRPSMNK 805
Query: 509 VKADRDLSDGQTFNSLEVVKTSNQPRKT--YLSRNLIALLSYGGVPEIFFL----DILRN 562
A L ++ SN PR + YL+R L+ LL GV F D +
Sbjct: 806 FDAPDSLD----------IEVSNIPRASHMYLNRPLVMLLEDLGVRLSTFKQLQEDTMAA 855
Query: 563 ALDDAR--GVFSNKRNALKVSFNY---------GGMDYDFTSARMILSGISLDEPYLQHR 611
LD AR G F N + + + M++ G LD+ Y H
Sbjct: 856 DLDAARHIGRFIIGMNQIGLGKRFYLSYVLGELADMEFGLRDDCQGDFGSLLDD-YWYHG 914
Query: 612 L--SILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILK-----DGQVSWEK 664
+ S L + +K ++ V +S+ L+G +D IL++ ++ ++ +G
Sbjct: 915 IVKSTLWDQFRKIKYQARIRVPDSWTLVGVLDEHQILQTGQIMAYVQNEDYPNGYFLKGP 974
Query: 665 VLVYRNPGLHFGDIHVLKAT 684
VL+ R+P +H GD+ +++A
Sbjct: 975 VLICRSPVVHPGDVQMVEAV 994
>gi|361130936|gb|EHL02666.1| putative RNA-dependent RNA polymerase 2 [Glarea lozoyensis 74030]
Length = 902
Score = 47.4 bits (111), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 482 GTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRN 541
GT+ KG + L+ +L + +R SMIK + G LE+ + + +P YL+R
Sbjct: 407 GTSAKGMISLDSRLKGNVLVVRDSMIKFR-------GSKSADLEICEAAYRPLPMYLNRQ 459
Query: 542 LIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALK 579
LI +L GV + +FL++ ++ R N +A K
Sbjct: 460 LIKILEDMGVEDDYFLNLQAREVESLRAAADNPMSASK 497
>gi|313244084|emb|CBY14941.1| unnamed protein product [Oikopleura dioica]
Length = 784
Score = 47.0 bits (110), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 94/235 (40%), Gaps = 44/235 (18%)
Query: 538 LSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMI 597
L+ + LL G+ + FL+I ++ + + ++ A ++ + MD +
Sbjct: 440 LNEQFVVLLDALGLEDNTFLNIQKDHFERLKRCMDDRIAAFEILSSEKRMD-----EADL 494
Query: 598 LSGISLDEPYLQHRLSILMK---------------EEKKSLQ--AGKLPVTESYYLMGTV 640
L D PY ++ L + E+K+++ A +P+++S + G
Sbjct: 495 LDRTDEDSPYPPEVINTLKRFRKPVFDLPSAKPDRREEKNIKNAAFYIPISKSRNVYGVA 554
Query: 641 DPTGILKSNEVCIIL---------KDGQVSWE----------KVLVYRNPGLHFGDIHVL 681
D +G L+ E + + K G E KVLV + P H GD VL
Sbjct: 555 DISGKLRKGECFVQITQYEEVVDKKRGTSRKERRMLPLGNGAKVLVNKCPTYHPGDFRVL 614
Query: 682 KATYVKELEDFVGTSKYAIFFPCNGP---RSLADEIAGGDFDGDMYFVSRNPELL 733
+ T+V EL + ++ P R E+ D DGD YFVS + L+
Sbjct: 615 QNTHVPELMHLCDVIVFPVYDKVYNPDLKRPHPHEMHESDLDGDEYFVSWDERLI 669
>gi|395335049|gb|EJF67425.1| hypothetical protein DICSQDRAFT_177042 [Dichomitus squalens
LYAD-421 SS1]
Length = 1306
Score = 47.0 bits (110), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 18/120 (15%)
Query: 628 LPVTESYYLMGTVDPTGILKSNEVCII----LKDG-------QVSWEKVLVYRNPGLHFG 676
+P++ +++ DP GIL E+ LKD Q+ E VL+YRNP
Sbjct: 828 VPLSAEAFIIP--DPYGILNEREIHFKSTKNLKDPLEDMNPHQLLGE-VLIYRNPCRLPS 884
Query: 677 DIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHF 736
D+ + A D + I P G RS A +AGGD+DGD+ V + L+K F
Sbjct: 885 DVQKVTAVQC----DVLAAYTDVIVLPTVGARSFASYLAGGDYDGDVAVVIYDDRLVKDF 940
>gi|443895352|dbj|GAC72698.1| RNA-directed RNA polymerase QDE-1 [Pseudozyma antarctica T-34]
Length = 1496
Score = 46.6 bits (109), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 92/361 (25%), Positives = 146/361 (40%), Gaps = 66/361 (18%)
Query: 364 ANYMSRLSLILSKTMK-LEVDFSRI-NIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFI 421
A Y +RLS S T + +EVD S I ++ IE P R + +TDG G I
Sbjct: 517 AMYGARLSQAFSATARTVEVDSSLILHMPDIE-TPDRK------------MAYTDGVGQI 563
Query: 422 SEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYN 481
S +L + V+++ T+ R RK +A P +Q+R+
Sbjct: 564 SPELMAE----VWEKYVTSALGEPRK--RKFFKA-------------AAPSAIQIRI--- 601
Query: 482 GTAVKGTLLLNKKLPPQTIQIRPSMIK-VKADRDLSDGQTFNSLEVVKTSNQPRKTYLSR 540
KG L +N +L + + +RPSM K V +D LEV +S + L+R
Sbjct: 602 -GGHKGCLTVNPRLQGKQLALRPSMSKFVSPHQD---------LEVANSSARCLSAKLNR 651
Query: 541 NLIALLSYGGVPEIFFLDILRNALDD---ARGVFSNKRNALKVSFNYG-GMDYDFTSARM 596
LI L GVP LDI + A+ AR F ++ L ++++G G D ++
Sbjct: 652 PLINALDDRGVPATALLDIQKEAIAHIGRARTHF-DETAKLCSAYSFGTGCDLHILFQKL 710
Query: 597 ILSG-----ISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEV 651
G I D +L +++ + ++PV L+G D LK EV
Sbjct: 711 HKHGMGATSIHSDSFFLVLAKAVIAAALGDMKRKARIPV-RGVTLIGVADEFAFLKEGEV 769
Query: 652 CIILKD---GQVSWEKV----LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPC 704
++ GQV + L+ R+P + GDI ++K + +F C
Sbjct: 770 FAQVEHVDLGQVRRRVLVGTKLIGRSPTVDPGDIAMVKCVRPPPGHPLLQLRNVVVFNTC 829
Query: 705 N 705
Sbjct: 830 T 830
>gi|346978355|gb|EGY21807.1| RNA-dependent RNA polymerase [Verticillium dahliae VdLs.17]
Length = 1394
Score = 46.6 bits (109), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 51/116 (43%), Gaps = 15/116 (12%)
Query: 633 SYYLMGTVDPTGILKSNEVCIILK------DGQVS-----WEKVLVYRNPGLHFGDIHVL 681
S Y VD G+L+ E+ + DGQ S VLV R P DI +
Sbjct: 875 STYAKMVVDFKGVLEEGEIHLGFSTKFMDPDGQFSDTLLHGMDVLVARAPAHFPSDIQRV 934
Query: 682 KATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFK 737
+A + EL K I F G LAD ++GGD+DGD +V + ++ F+
Sbjct: 935 RAVFRPELRHL----KDVIVFSIKGDSPLADLLSGGDYDGDQAWVCWDSTIVNSFQ 986
>gi|242215346|ref|XP_002473489.1| predicted protein [Postia placenta Mad-698-R]
gi|220727390|gb|EED81310.1| predicted protein [Postia placenta Mad-698-R]
Length = 1162
Score = 46.6 bits (109), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 67/310 (21%), Positives = 122/310 (39%), Gaps = 66/310 (21%)
Query: 364 ANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGE-ALIHTDGTGFIS 422
A Y +R+ + TM + SR E I++ +++D E HTDG G +S
Sbjct: 456 AKYAARIGQAFTSTM-CSMPISRDQWEEIDE----------IWEDRENPRSHTDGVGRLS 504
Query: 423 EDLA-----LKCPTY----VYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLL 473
+ L + C Y VY K + ++ + L +F+ + + +H P
Sbjct: 505 QALMDRIWDIVCNLYPDYGVYGVKPS-------AVQFRFLGKSFNTIVQKITHSSSP--- 554
Query: 474 MQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVK---------ADRDLSDGQTFNSL 524
KG L ++ +L + I RP M K K + D + +L
Sbjct: 555 ---------LGYKGVLAVDPQLSGERICFRPEMRKFKPLICPYCREGNLDFCPHENDQNL 605
Query: 525 EVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNA---LDDARGVFSNKRNALKVS 581
+ + P++ YL+R+L+++L GV F+D+ + A AR + + L+
Sbjct: 606 HIADIFDSPKRAYLTRDLVSILEDRGVHLKAFMDLQQEAKMKTYQARDSVTQFMDILQTH 665
Query: 582 FNYGGMDYDFTSARMI--LSGISLDEPYLQHRLSILMKEEKKSLQA--------GKLPVT 631
M + F R++ L + +D Q + + ++Q ++PV
Sbjct: 666 H----MGFQFRLPRLLERLDSLGVDATRNQEADDFTRRVREHAIQHVLCDMKNRARIPVP 721
Query: 632 ESYYLMGTVD 641
SY L+G D
Sbjct: 722 RSYLLVGVAD 731
>gi|401885409|gb|EJT49528.1| hypothetical protein A1Q1_01432 [Trichosporon asahii var. asahii
CBS 2479]
Length = 1000
Score = 46.2 bits (108), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 104/257 (40%), Gaps = 33/257 (12%)
Query: 468 GEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQ-TIQIRPSMIKVKADRDLSDGQTFNSLEV 526
GE P +Q RL KG L + I +RPS K ++ L V
Sbjct: 553 GEAPSALQFRL----GGAKGVLAYWPGMAGNDEILMRPSQTKFES--------RLKELNV 600
Query: 527 VKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNK--RNALKVSFNY 584
V+ + + +L+R I ++S GVP+ F + A G+ R+ K
Sbjct: 601 VRIAKY-QSAFLNRQFINIMSACGVPDALFEQLFVEATQAIEGLPERAVLRDLTKDDLVL 659
Query: 585 GGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQ----AGKLPVTESYYLMGTV 640
+F ++I +G + + P +Q ++ E ++LQ ++ + YL+G
Sbjct: 660 FQQYTEFPMVQVIDAGFARN-PMIQDLARLV---EARALQDLKWRARVKLDMGVYLIGVA 715
Query: 641 DPTGILKSNEVCIILK-----DGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGT 695
D TG+LK EV + + + V V+V R P LH GD+ +A +L
Sbjct: 716 DETGLLKEGEVFVQYQVTENDEPVVVTGAVVVCRAPALHPGDVRTARAVDHPQLRHL--- 772
Query: 696 SKYAIFFPCNGPRSLAD 712
K + F G R L +
Sbjct: 773 -KNVVVFSIKGARPLPN 788
>gi|358377627|gb|EHK15310.1| hypothetical protein TRIVIDRAFT_122493, partial [Trichoderma virens
Gv29-8]
Length = 1284
Score = 46.2 bits (108), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 665 VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMY 724
+LV R P DI ++ EL K I F G + LAD ++GGD+DGDM
Sbjct: 842 ILVARAPAHFPSDIQRVRVVSRPELRKL----KDVIIFSTKGDKPLADMLSGGDYDGDMA 897
Query: 725 FVSRNPELLKHF 736
+V + ++K+F
Sbjct: 898 WVCWDQNIVKNF 909
>gi|397613827|gb|EJK62448.1| hypothetical protein THAOC_16940 [Thalassiosira oceanica]
Length = 552
Score = 45.8 bits (107), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 10/102 (9%)
Query: 635 YLMGTVDPTGILKSNEVCII-LKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELE--- 690
Y++G DPT + +V I K + +KV+V R+P ++ D+ K K +
Sbjct: 270 YVVGVADPTNSIPFGQVFITGFKHIKTYQDKVIVSRSPCINNLDMRTAKTVVAKPRKMNH 329
Query: 691 ---DFVGTSKYAIFF---PCNGPRSLADEIAGGDFDGDMYFV 726
+++ + + + P G +S+ ++IA GD DGD YF+
Sbjct: 330 DEWEWLNSLPFGVLVFPNPPTGTQSMPEQIANGDLDGDRYFI 371
>gi|167387881|ref|XP_001738345.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165898438|gb|EDR25286.1| hypothetical protein EDI_165180 [Entamoeba dispar SAW760]
Length = 857
Score = 45.1 bits (105), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 118/281 (41%), Gaps = 69/281 (24%)
Query: 457 FSDVAR-TESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDL 515
+S ++R +S Y P LL RL Y G G ++++ + T+ + M+ D
Sbjct: 342 WSKISRDKKSVYSVPTLL---RLLYKGYF--GDFIVSQTIE-NTVYVHRQMLSSIGDI-- 393
Query: 516 SDGQTFNSLEVVKTSNQPRKTYLSRNLIA-LLSYGGVPEIFFLDILRNALDDARGVFSNK 574
GQ + SN +S N++A LL YG P++ F + ++ + K
Sbjct: 394 --GQII----LFDRSNAVPYGMISHNVVAMLLHYGVKPDLLFSKVEKHVSEKKITSIMTK 447
Query: 575 RNALKVSFNYGGMDYDFTSARMILSGISLDEPY---LQHRLSILMKEEKKSLQAGKLPVT 631
N+ + + S I+ EP+ LQ ++I + L +P+
Sbjct: 448 DNS-----------------QYLYSIINEQEPFSKALQEHINI-----SQLLLQRHVPLH 485
Query: 632 ESYYLMGTVDPTGILKSNEVCI-ILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELE 690
SY L+G +DP GIL+S EV I ++K+ +S+ K + N DIH L L+
Sbjct: 486 PSYRLVGVLDPYGILESGEVAIGLVKNILISFGKTALVANN----NDIHPL------SLQ 535
Query: 691 DF-VGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNP 730
F + SKY I DF G + F S++P
Sbjct: 536 RFIIKNSKYPI----------------NDFTGCIIFSSKDP 560
>gi|299740231|ref|XP_001838952.2| hypothetical protein CC1G_05505 [Coprinopsis cinerea okayama7#130]
gi|298404148|gb|EAU82883.2| hypothetical protein CC1G_05505 [Coprinopsis cinerea okayama7#130]
Length = 1214
Score = 45.1 bits (105), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 24/137 (17%)
Query: 621 KSLQAG-----KLPVTESYYLMGTVDPTGILKSN----------EVCIIL-----KDGQV 660
K++ AG ++PV +S+ L+G D K E CI + +D +
Sbjct: 768 KTVMAGIRYEARIPVPKSWVLVGVADEGPAYKGQPGYENVYCLPENCIFVCIQEDQDSEP 827
Query: 661 SWEK--VLVYRNPGLHFGDIHVLKAT--YVKELEDFVGTSKYAIFFPCNGPRSLADEIAG 716
W + +V RNP + GDI ++A + ++ K + F G RSL +AG
Sbjct: 828 EWLEGDCVVTRNPVVRPGDIQKVRAIGKPPRGVKCLFRDLKNVVVFSSQGRRSLPSCLAG 887
Query: 717 GDFDGDMYFVSRNPELL 733
GD DGD Y V + LL
Sbjct: 888 GDLDGDKYAVIQYEGLL 904
>gi|302673317|ref|XP_003026345.1| expressed protein [Schizophyllum commune H4-8]
gi|300100027|gb|EFI91442.1| expressed protein [Schizophyllum commune H4-8]
Length = 984
Score = 44.3 bits (103), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 124/568 (21%), Positives = 205/568 (36%), Gaps = 146/568 (25%)
Query: 363 VANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFIS 422
+ +++R SL S ++ V+F+ N+ IEDE D + E + TDG GFI+
Sbjct: 256 ITKWVTRFSLSFSTSIP-AVEFAEENMFLIEDEYATGWDRSSGAPPAEQTM-TDGCGFIN 313
Query: 423 EDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNG 482
A +D+ R S P +Q R+
Sbjct: 314 R-------------------------------AALTDIGRRFSLPYGMPTAVQGRV---- 338
Query: 483 TAVKGTLLLNK--KLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSR 540
KG LL+ K P + IR S K+K R + + L+ + N P LS
Sbjct: 339 AGAKGMFLLHPYDKHPEPRVWIRDSQNKIKLPRLERWHRILDLLKFAQQPN-PEGFDLSE 397
Query: 541 NLIALLSYGGVPEIFFLDILRN---------------------ALDDARGVFSNKR---- 575
+ LS+ GV F + RN A+ D V ++R
Sbjct: 398 QAVLNLSHNGVHTEDFTVLARNGLRERAAPLLNWTQPAGALWKAVSDIGNVTGSRRVRGS 457
Query: 576 ---NALKVSFNYGGMDYDFTSAR--MILSGISLDEPYLQHRLSILMKEEKKSLQAG---- 626
+ L + G D D + + + ++ +PY S+ ++ + LQAG
Sbjct: 458 QVMHRLVSGYRQTGADEDLPTGDEDQMEAALTGRDPYSGAPRSV-HEQVVELLQAGFKPQ 516
Query: 627 ------------------------KLPVTESYYLMGTV--DPTGILKSNEVCIILKDG-- 658
++PV +S L V DP G+L +E+ +
Sbjct: 517 ECEYLRIKMAKVLDMVCQSAVEDYRVPVPDSRGLNAFVVPDPLGVLNEDEIFYMPSPSFM 576
Query: 659 --------QVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSL 710
Q +V+V R P D+ +KA L + I P G RSL
Sbjct: 577 DPKEQVMVQAVEGEVIVGRYPIRLPSDLRKVKAVNRPALHQYTNV----ILVPTVGERSL 632
Query: 711 ADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSAN-----KRLIDF------- 758
++GGD DGD+ F+ R K+F T +S N + + DF
Sbjct: 633 VSLLSGGDCDGDILFMLRG-IFTKNFVNRPYSAPTPDFMSRNFEKERETIADFCGRVAQY 691
Query: 759 -SLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRL 817
S E ++ L ++FL A+ + + + D + E +R+
Sbjct: 692 GSHAERQAALARVFL-------------AELGDSKVGIYSMYHDMAIAEHGYGAPETVRI 738
Query: 818 INIYYDALDAPKKSGIKVE---VPEDLK 842
+++ LDA KK+G++V+ + ED+K
Sbjct: 739 AHMFNTLLDA-KKTGVRVKPHILVEDMK 765
>gi|345562071|gb|EGX45143.1| hypothetical protein AOL_s00173g244 [Arthrobotrys oligospora ATCC
24927]
Length = 1092
Score = 44.3 bits (103), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 113/287 (39%), Gaps = 44/287 (15%)
Query: 486 KGTLLL---NKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNL 542
KG +LL N I R + IK + +DL+ +EVV + ++ ++
Sbjct: 443 KGLILLDVENSDSESLRITYRKTQIKFETRQDLN-------IEVVDYARPLKRGKITSQF 495
Query: 543 IALLSYGGVPEIFFLDILRNALDDARGVFS--------------------NKRNALKVSF 582
+ +L GGV + ++ + ++ G++ KR F
Sbjct: 496 LTILHNGGVSKETLGNLAKEEIE-KDGIWELLERAGDPSFVKNFYQSGALKKRRDKDGCF 554
Query: 583 NYGGMDYDFTSAR---MILSGISLDEPY-LQHRLSILMKEEKKSLQAGKLPVTESYYLMG 638
Y G R M+ +G ++ E L++ +S K S K ++ES +
Sbjct: 555 KYAGSMPASAEERIIQMVDAGFAVSECLVLKNLISGCNKNRLDSWNDLKFTISESTSVKC 614
Query: 639 TVDPTGILKSNEVCIILK-DGQVSWEK--------VLVYRNPGLHFGDIHVLKATYVKEL 689
D +L+ EV + DG V +K VLV R+P DI A E+
Sbjct: 615 APDFKKVLREGEVFLQFSSDGFVFNDKLLKFLSGKVLVGRSPAYIASDIQSAIAVMNPEV 674
Query: 690 EDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHF 736
+ G I FP G SLA ++GGD+DGD V + +++ F
Sbjct: 675 LEAYGDLVDCIVFPIVGEYSLASRLSGGDYDGDSVLVIWDQRVVEPF 721
>gi|67537240|ref|XP_662394.1| hypothetical protein AN4790.2 [Aspergillus nidulans FGSC A4]
gi|40741170|gb|EAA60360.1| hypothetical protein AN4790.2 [Aspergillus nidulans FGSC A4]
Length = 854
Score = 43.9 bits (102), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 72/330 (21%), Positives = 117/330 (35%), Gaps = 108/330 (32%)
Query: 408 DGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHY 467
+G I +DG G IS+ LA I + EL + ++
Sbjct: 324 EGNGYIFSDGVGRISKFLA--------------------QIVKSEL--------KIKTPT 355
Query: 468 GEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVV 527
EPP Q RL KG L++ + PQ + IR S K A LS G LE++
Sbjct: 356 KEPPSAYQFRL----VGCKGMLIVFPQARPQEVHIRKSQFKFAA---LSQG-----LEII 403
Query: 528 KTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGM 587
+ S Q L+R LI
Sbjct: 404 RWS-QFTVASLNRQLI-------------------------------------------- 418
Query: 588 DYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILK 647
++LS + + + +L +++ +++++ ++ L VDP +
Sbjct: 419 --------LVLSTLGITDKVFHLKLKTMLRNLDEAMESDP---KAAHLLRKYVDPNQV-- 465
Query: 648 SNEVCIILKDGQVSWEKV----LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFP 703
+ I L +E + ++ RNP LH G I V++A L K + P
Sbjct: 466 --TLTIYLPKNGEKYEIIEGICILARNPSLHPGGIRVVRAVNAPGLHHL----KDIVVLP 519
Query: 704 CNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
G R +A +G D DGD + V + +LL
Sbjct: 520 RTGDRDIASMCSGSDLDGDDFLVIWDQDLL 549
>gi|403160269|ref|XP_003320812.2| hypothetical protein PGTG_02834 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375169485|gb|EFP76393.2| hypothetical protein PGTG_02834 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1164
Score = 43.9 bits (102), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 19/153 (12%)
Query: 596 MILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIIL 655
++ SG + + RL++ K+ + + K+ ++ S + DPTG LK EV + L
Sbjct: 636 LLKSGFTARNNRVVDRLNVAGKQICEKMMNFKVEISSSATIYAIPDPTGTLKEGEVFLRL 695
Query: 656 ---KDGQVSWE------KVLVYRNPGLHFGDIHVLKATYVKEL---EDFVGTSKYAIFFP 703
+D + S +V R+P + D +KA + L ED + S
Sbjct: 696 SRFRDPKTSVPVNILKGDCVVARSPCVLPTDARKVKAVTNQRLACYEDVLVCS------- 748
Query: 704 CNGPRSLADEIAGGDFDGDMYFVSRNPELLKHF 736
G +SL D ++GGD+DGD+ V + K+F
Sbjct: 749 IQGKKSLLDYLSGGDYDGDVVIVIWDDAFTKNF 781
>gi|336376861|gb|EGO05196.1| hypothetical protein SERLA73DRAFT_68825 [Serpula lacrymans var.
lacrymans S7.3]
gi|336389793|gb|EGO30936.1| hypothetical protein SERLADRAFT_432597 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1094
Score = 43.9 bits (102), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 641 DPTGILKSNEVCI-------ILKDG---QVSWEKVLVYRNPGLHFGDIHVLKATYVKELE 690
DPTG L E+ I + +DG + VL+ R+P D+ ++A EL
Sbjct: 657 DPTGTLGPGEIHIKSSHPKFLCEDGTETDIVLGDVLLTRHPCKLPTDVQKVRAVEKAELR 716
Query: 691 DFVGTSKYAIFFPCNGP-RSLADEIAGGDFDGDMYFVSRNPELLKHFKESE 740
F K I P G R AD +AGGD+DGD E++ FK ++
Sbjct: 717 HF----KDVIVCPVKGTNRRFADLLAGGDYDGDKAIAIWQKEIVSPFKNAD 763
>gi|259482364|tpe|CBF76776.1| TPA: RNA-directed RNA polymerase (Sad-1), putative (AFU_orthologue;
AFUA_3G06790) [Aspergillus nidulans FGSC A4]
Length = 869
Score = 43.9 bits (102), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 72/330 (21%), Positives = 117/330 (35%), Gaps = 108/330 (32%)
Query: 408 DGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHY 467
+G I +DG G IS+ LA I + EL + ++
Sbjct: 339 EGNGYIFSDGVGRISKFLA--------------------QIVKSEL--------KIKTPT 370
Query: 468 GEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVV 527
EPP Q RL KG L++ + PQ + IR S K A LS G LE++
Sbjct: 371 KEPPSAYQFRL----VGCKGMLIVFPQARPQEVHIRKSQFKFAA---LSQG-----LEII 418
Query: 528 KTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGM 587
+ S Q L+R LI
Sbjct: 419 RWS-QFTVASLNRQLI-------------------------------------------- 433
Query: 588 DYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILK 647
++LS + + + +L +++ +++++ ++ L VDP +
Sbjct: 434 --------LVLSTLGITDKVFHLKLKTMLRNLDEAMESDP---KAAHLLRKYVDPNQV-- 480
Query: 648 SNEVCIILKDGQVSWEKV----LVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFP 703
+ I L +E + ++ RNP LH G I V++A L K + P
Sbjct: 481 --TLTIYLPKNGEKYEIIEGICILARNPSLHPGGIRVVRAVNAPGLHHL----KDIVVLP 534
Query: 704 CNGPRSLADEIAGGDFDGDMYFVSRNPELL 733
G R +A +G D DGD + V + +LL
Sbjct: 535 RTGDRDIASMCSGSDLDGDDFLVIWDQDLL 564
>gi|224148789|ref|XP_002336714.1| hypothetical protein POPTRDRAFT_593566 [Populus trichocarpa]
gi|222836572|gb|EEE74979.1| hypothetical protein POPTRDRAFT_593566 [Populus trichocarpa]
Length = 196
Score = 43.5 bits (101), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 806 EKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLG 865
E A+ E L L + ++D PK +G V +P DLK + +P +M ++E S++S +LG
Sbjct: 37 EYGALDEKCLTLAELAATSVDFPK-TGKIVSMPSDLKPKIYPDFMGKEEHQSYKSKKILG 95
Query: 866 TIYNTVK 872
+Y +K
Sbjct: 96 RLYRQIK 102
>gi|340515396|gb|EGR45650.1| predicted protein [Trichoderma reesei QM6a]
Length = 989
Score = 43.1 bits (100), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 71/171 (41%), Gaps = 26/171 (15%)
Query: 576 NALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAG-KLPVTESY 634
NA KV+F +D F +M YLQ + + K + L+ + V S
Sbjct: 458 NADKVAF---LLDSGFDQKKM---------KYLQDIVWDMCKRKADVLKTKMNITVPCSA 505
Query: 635 YLMGTVDPTGILKSNEVCIILK---------DGQVSWEKVLVYRNPGLHFGDIHVLKATY 685
Y+ D T L+ +EV + D + +LV R P DI +K
Sbjct: 506 YIYMAADFTSTLEEDEVHLSFSTKFQADGFSDTLLEGMDILVARVPAHLPSDIQRVKVVS 565
Query: 686 VKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHF 736
EL K I F G LA +++GGD+DGDM +V + ++K+F
Sbjct: 566 RPELRKL----KDVIIFSTKGGVPLAHKLSGGDYDGDMAWVCWDQNIVKNF 612
>gi|403159921|ref|XP_003890550.1| hypothetical protein PGTG_20838 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375169335|gb|EHS63855.1| hypothetical protein PGTG_20838 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1158
Score = 42.7 bits (99), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 67/305 (21%), Positives = 126/305 (41%), Gaps = 50/305 (16%)
Query: 596 MILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCI-- 653
M+ +G Y+ +L + +++ + ++P+ +S YL DPTG LK +E +
Sbjct: 595 MLAAGFEPRNRYIVTKLRKIKEDKISNAIKFRVPIAQSTYLYVMPDPTGTLKEDEAFLQF 654
Query: 654 -ILKDGQVSWE------KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCN- 705
+D Q + +V R+P + + A + +++ + Y C+
Sbjct: 655 SSFEDYQTGIKLSNLVCPAIVSRSPC-----VASIDARKINLVDNDILRDVYYDVLVCSI 709
Query: 706 -GPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELE 764
G SL ++GGD+DGD V +P L++ F + + + ++ L +E
Sbjct: 710 QGKTSLLSLLSGGDYDGDQVMVIWDPVLVQQFHNVD--LDKHPRIVTDELFEPVQLGTVE 767
Query: 765 SELFKLFLNTR---------------FCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAA 809
L + + N F P++A S + + M +L D +K
Sbjct: 768 ECLLEAYENNPEEFVKTAQLIQAAGLFTPNDAGSYSI---KHTMAEYLFGLDNPLTQK-- 822
Query: 810 MKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYN 869
L +Y LDAP K+G +++ DL ++K Y + V+F + + I+
Sbjct: 823 -------LGEVYVKCLDAP-KAGTQLKAEADLLLKKE--YETALDKVTFPNGKKI--IHF 870
Query: 870 TVKSY 874
VKSY
Sbjct: 871 PVKSY 875
>gi|409051063|gb|EKM60539.1| hypothetical protein PHACADRAFT_82474, partial [Phanerochaete
carnosa HHB-10118-sp]
Length = 639
Score = 42.7 bits (99), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 22/153 (14%)
Query: 611 RLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCI------ILKDGQVSWE- 663
+ ++ K S ++ V S DPTG+L++ E+ + + DG+ +
Sbjct: 379 KAKVVKKANTTSFSKYRVNVPMSCSAWAVPDPTGVLEAGEIYVESSAPLLSADGKTEADV 438
Query: 664 ---KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNG--------PRSLAD 712
VL+ R+P D+ +KA +EL + K + G R L
Sbjct: 439 IVGDVLITRHPCKVPSDVQKVKAVNRRELRGY----KDLVVVSTKGHRVQTQLLDRHLLS 494
Query: 713 EIAGGDFDGDMYFVSRNPELLKHFKESERWMST 745
+ GGD+DGD V NPEL+ F+ ++ +T
Sbjct: 495 MLGGGDYDGDRVQVFWNPELVDGFQPADPAFAT 527
>gi|407033788|gb|EKE36999.1| hypothetical protein ENU1_212940 [Entamoeba nuttalli P19]
Length = 857
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 116/278 (41%), Gaps = 63/278 (22%)
Query: 457 FSDVAR-TESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDL 515
+S ++R +S Y P LL RL Y G G ++++ + T+ + M+ D
Sbjct: 342 WSKISREKKSVYSVPTLL---RLLYKGYL--GDFIVSQTIE-NTVYVHRQMLSPIGDV-- 393
Query: 516 SDGQTFNSLEVVKTSNQPRKTYLSRNLIA-LLSYGGVPEIFFLDILRNALDDARGVFSNK 574
GQ + SN +S N++A LL YG P++ F + ++ + +
Sbjct: 394 --GQII----LFDRSNAVPYGMISHNVVAMLLHYGVKPDLLFSKVEKHVSEKKITSVMTR 447
Query: 575 RNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESY 634
N+ + Y +D ++ + I++ + LQ + P+ SY
Sbjct: 448 DNS---QYLYSIIDQQEPFSKALKEHINISQLLLQRHI----------------PLYPSY 488
Query: 635 YLMGTVDPTGILKSNEVCI-ILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDF- 692
L+G +DP GIL+S E+ I ++K+ +S+ K + N DIH L L+ F
Sbjct: 489 RLVGVLDPYGILESGEIAIGLVKNILISFGKTALVANN----NDIHPL------SLKRFI 538
Query: 693 VGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNP 730
+ SKY I DF G + F S++P
Sbjct: 539 INNSKYPI----------------NDFTGCIIFSSKDP 560
>gi|299747734|ref|XP_001837224.2| hypothetical protein CC1G_00360 [Coprinopsis cinerea okayama7#130]
gi|298407654|gb|EAU84841.2| hypothetical protein CC1G_00360 [Coprinopsis cinerea okayama7#130]
Length = 1039
Score = 42.4 bits (98), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 98/248 (39%), Gaps = 22/248 (8%)
Query: 606 PYLQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKSNEVC-------IILKD 657
P L +L +++ L + ++ V S M D GILK E+ ++ +D
Sbjct: 542 PVLAEKLKAVIRTRVSRLTHSYRIEVPMSCMAMIVPDKRGILKEGEIFFRSSHRDLLDRD 601
Query: 658 GQ---VSWEKVLVYRNPGLHFGDIH--VLKATYVKELEDFVGTSKYAIFFPCNGPRSLAD 712
G+ + VL+ R P DI KA L D VG I G R AD
Sbjct: 602 GEKTDIITGDVLITRYPCKLPTDIQKASCKAVDHPGLHDLVGV----IILSTKGTRRAAD 657
Query: 713 EIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELFK--- 769
I GGD+DGD + +P +++ F + + ++ D +E ++
Sbjct: 658 FIGGGDYDGDKAMIIWHPPMVEAFTPKNQCFADPPEPGFKEKYFDSGHNVPVAEFYRCIQ 717
Query: 770 -LFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAP 828
L + SLAA A + R+ + + + +RL +++ LD
Sbjct: 718 PLSTAEQIYKIQDYSLAALQDTASVGRYSNFHENAIQMLGYDHPETIRLAHMFCMVLDG- 776
Query: 829 KKSGIKVE 836
K+G++V+
Sbjct: 777 SKTGLRVK 784
>gi|403358446|gb|EJY78873.1| RNA-directed RNA polymerase [Oxytricha trifallax]
Length = 1379
Score = 42.4 bits (98), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 60/154 (38%), Gaps = 39/154 (25%)
Query: 624 QAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEK------------------- 664
+ ++ + S L+G +D TG L E+ + + G +++
Sbjct: 849 KKARIRIKNSCTLIGVIDETGTLDEGEIYLKINRGSYDYDQIQEKLVDEYDEIENADGKK 908
Query: 665 -----------------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGP 707
V+V +NP H GDI L+A V E F + I F G
Sbjct: 909 SRLAEINTWLDQIIEGDVIVTKNPCSHPGDIRKLRA--VGEHSTFEHLTN-VIVFSSKGC 965
Query: 708 RSLADEIAGGDFDGDMYFVSRNPELLKHFKESER 741
R +++GGD DGD+Y + L+ ++ E+
Sbjct: 966 RPEQHKMSGGDLDGDVYLCMWDESLVNALQKIEK 999
>gi|403374620|gb|EJY87268.1| RNA-directed RNA polymerase [Oxytricha trifallax]
Length = 1352
Score = 42.4 bits (98), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 60/154 (38%), Gaps = 39/154 (25%)
Query: 624 QAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEK------------------- 664
+ ++ + S L+G +D TG L E+ + + G +++
Sbjct: 822 KKARIRIKNSCTLIGVIDETGTLDEGEIYLKINRGSYDYDQIQEKLVDEYDEIENADGKK 881
Query: 665 -----------------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGP 707
V+V +NP H GDI L+A V E F + I F G
Sbjct: 882 SRLAEINTWLDQIIEGDVIVTKNPCSHPGDIRKLRA--VGEHSTFEHLTN-VIVFSSKGC 938
Query: 708 RSLADEIAGGDFDGDMYFVSRNPELLKHFKESER 741
R +++GGD DGD+Y + L+ ++ E+
Sbjct: 939 RPEQHKMSGGDLDGDVYLCMWDESLVNALQKIEK 972
>gi|403337310|gb|EJY67868.1| RNA-directed RNA polymerase [Oxytricha trifallax]
Length = 1352
Score = 42.4 bits (98), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 60/154 (38%), Gaps = 39/154 (25%)
Query: 624 QAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEK------------------- 664
+ ++ + S L+G +D TG L E+ + + G +++
Sbjct: 822 KKARIRIKNSCTLIGVIDETGTLDEGEIYLKINRGSYDYDQIQEKLVDEYDEIENADGKK 881
Query: 665 -----------------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGP 707
V+V +NP H GDI L+A V E F + I F G
Sbjct: 882 SRLAEINTWLDQIIEGDVIVTKNPCSHPGDIRKLRA--VGEHSTFEHLTN-VIVFSSKGC 938
Query: 708 RSLADEIAGGDFDGDMYFVSRNPELLKHFKESER 741
R +++GGD DGD+Y + L+ ++ E+
Sbjct: 939 RPEQHKMSGGDLDGDVYLCMWDESLVNALQKIEK 972
>gi|343426952|emb|CBQ70480.1| related to RNA-directed RNA polymerase [Sporisorium reilianum SRZ2]
Length = 1037
Score = 42.0 bits (97), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 116/285 (40%), Gaps = 50/285 (17%)
Query: 414 HTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLL 473
HTDG G IS L V++ N + RK L+A+ P
Sbjct: 272 HTDGVGQISPALMAD----VWESYLVNHGEFRK---RKLLKAS-------------APSA 311
Query: 474 MQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQP 533
+Q+RL KG L LN +L + + IRPSM K + LEV +S++
Sbjct: 312 IQIRL----GGSKGMLSLNPRLTGKVLYIRPSMSKFDSQH--------QDLEVANSSSRC 359
Query: 534 RKTYLSRNLIALLSYGGVPEIFFLDILRNALDD---ARGVFSNKRNALKVSFNYG---GM 587
L+R L+ L GV F+ I A+ AR F ++ L +F++G +
Sbjct: 360 LTAKLNRPLVNALDDRGVHASAFIAIQDEAISQIGRARHNF-DETARLVSAFSFGTGCNL 418
Query: 588 DYDFTSARMILSGISLDEP---YLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTG 644
F + G + +P +L ++ + ++PV L+G D G
Sbjct: 419 RILFEKVHKVGLGAASTDPESFFLVLAKAVTAAALGDMKRKARIPVA-GVTLLGIADEFG 477
Query: 645 ILKSNEVCIILKD---GQVSWE----KVLVYRNPGLHFGDIHVLK 682
LK EV + ++ GQVS + L+ R+P + DI +++
Sbjct: 478 YLKEGEVFVQVETVDFGQVSRRILTGRKLIGRSPTIDPSDITMVQ 522
>gi|34447177|dbj|BAC84970.1| RNA-directed RNA Polymerase [Vigna unguiculata]
Length = 257
Score = 42.0 bits (97), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 805 EEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVL 864
+ + AM E L+L ++ A+D PK +G+ +P L V+++P +M + + ++ S +V+
Sbjct: 28 QPRKAMSEECLKLAKLFSTAVDFPK-TGVPAVIPRVLYVKEYPDFMEKSDKETYISPNVI 86
Query: 865 GTIYNTV 871
G +Y V
Sbjct: 87 GKLYREV 93
>gi|392567096|gb|EIW60271.1| RdRP-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 1228
Score = 41.6 bits (96), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 148/747 (19%), Positives = 281/747 (37%), Gaps = 185/747 (24%)
Query: 201 KLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELG-DDNI 259
++ + + R + D GK +H T +GPY++ + +++ G +D+
Sbjct: 403 RMAMRKFEDYEERAARDKDMGKFQCHHITF-TPTRVILEGPYVSVSNRVIRQFAGFEDHF 461
Query: 260 LLVKF-DEELGGHRSSNNWNDSY---SKYNEIAREGILVGLRCYHFFVFKDGGKEEKK-- 313
+ V F DE+ +R + + + + I + G +G R Y F + E
Sbjct: 462 VRVDFRDEDRLQYRWAREVDGTTLLTERVGGILKHGFELGGRQYEFLAYSSSALREHAVW 521
Query: 314 -KDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSL 372
+P P + + + + + ++ F +V + + Y +RL+
Sbjct: 522 FMNPFEHPTQGF-----------------VCAQRIRDSLGDFTNV--IKQPSKYAARLAQ 562
Query: 373 ILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTY 432
+ T V SR E +ED + + E + TDG G IS++L
Sbjct: 563 AFTAT-DPSVSISRDQWEEMED----------LESEQEDYLFTDGVGTISQELG----DM 607
Query: 433 VYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLN 492
+++ CT +S R V T Y Q+R KG ++++
Sbjct: 608 IWEALCTAKESLRR-------------VDHTPHAY-------QIRFL----GFKGVVVID 643
Query: 493 KKLPPQTIQIRPSMIKVKA-DRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGV 551
K+L +++RPSM K + D D++ +E+ + ++P +YL++ LI +L GV
Sbjct: 644 KRLKGIKMRLRPSMNKFEVPDMDIA------PIEIARWFDRPGTSYLNKALIMILEDRGV 697
Query: 552 PEIFFLDILRNA---LDDARGVFSN-----KRNALKVSFNYGGMDYDFTSARMILSG--- 600
+ FL + A + A ++ K + L SFN + +A + + G
Sbjct: 698 EQKAFLKLQEMAAAQITTASDTITSTTLLLKAHNLGQSFNIPFVLKALRAAGLGMRGEPD 757
Query: 601 ---ISLDEPYLQHRLSILMKEEKKSLQAG-KLPVTESY---------------------- 634
L + +L+ L + ++ G ++P+ +SY
Sbjct: 758 SPAGDLGDTFLRSLLIFAQHHILRDIKHGARIPIPDSYLLVGVADEGPVYEKEGVEDVFM 817
Query: 635 -------------------YLMGTVDPTGILKSNEVCIILKDGQVSWEKVLVYRNPGLHF 675
YL GTV + R+P +H
Sbjct: 818 LQEGQIYACIQNEADEKPVYLKGTVS-------------------------ISRSPVVHP 852
Query: 676 GDIHVLKATYVKEL--EDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMY-FVSRNPEL 732
GD+ + A E F K + P G RSLA + GGD DGD+Y + +P +
Sbjct: 853 GDVQRVWAIGEPPAGKECFFRGLKNVVVLPSVGKRSLASMLGGGDLDGDLYSIIKYDPLI 912
Query: 733 LKHFKESERWMSTSKNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAV 792
E ++S + R D +++++ C + + +D +
Sbjct: 913 PIEHAEPGSYVSVGTRSLPDGR--DSTVDDI-------------CDFIVEYINSDVLGLL 957
Query: 793 MDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEV---PEDLKVEKFPCY 849
DR L + D+S + L L + A+D P K+G+ V++ P+ L EK P +
Sbjct: 958 SDRHLIIADQSKD--GTSDPACLELARLCSQAVDYP-KNGVPVDIFDSPKLLIREK-PDW 1013
Query: 850 MRRDESVS-----FESTSVLGTIYNTV 871
+ ++S + S+ LG ++ ++
Sbjct: 1014 KKAEDSDPRDTDYYFSSRALGELFRSI 1040
>gi|402577566|gb|EJW71522.1| hypothetical protein WUBG_17571 [Wuchereria bancrofti]
Length = 89
Score = 41.6 bits (96), Expect = 2.2, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 16/93 (17%)
Query: 636 LMGTVDPTGILKSNEVCI------ILKDGQVSWEK------VLVYRNPGLHFGDIHVLKA 683
+ G +D TG+L+ +V + LK + K VL+ +NP + GD+ + +A
Sbjct: 1 MFGILDETGLLQYGQVFVQFTNDVFLKTPPKAAAKTIVKGFVLITKNPSIVAGDVRIFEA 60
Query: 684 TYVKELEDFVGTSKYAIFFPCNGPRSLADEIAG 716
+ EL V + FP +GPR DE+AG
Sbjct: 61 VDLPELRHLVDV----VVFPQHGPRPHTDEMAG 89
>gi|326483110|gb|EGE07120.1| RNA-directed RNA polymerase [Trichophyton equinum CBS 127.97]
Length = 1286
Score = 41.2 bits (95), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 88/237 (37%), Gaps = 34/237 (14%)
Query: 523 SLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRN----AL 578
+ +V S P+ +L+ + +L G + + L ++ D F +N A
Sbjct: 718 TFDVSSYSQPPQPVHLNTQFLMVLQDRGTNKEYILSLIPKEADKFYSEFLLVQNGDSAAC 777
Query: 579 KVSFNYGGMDYD----------FTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKL 628
+ G D F +R + + LD +L L+ + + K++ +
Sbjct: 778 RAWVRQNGGDASSQIPALNESTFPPSRTVQLNMFLDAGFLPSNLAFVRRLFKENFLGDFV 837
Query: 629 PVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEK---------VLVYRNPGLHFGDIH 679
E+ + I KS I D SWE VLV R P DI
Sbjct: 838 QKLEALKI-------KIPKSTYKAQIHLDLGDSWEDGTTDLDGIDVLVARAPAHLPSDIQ 890
Query: 680 VLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHF 736
+A + L K FP G LA ++GGD+DGD +V + E++K F
Sbjct: 891 KCRAVFHPALRYL----KNVAIFPTKGEVPLASLLSGGDYDGDEVWVCWDQEIVKPF 943
>gi|399030081|ref|ZP_10730631.1| hypothetical protein PMI10_02470 [Flavobacterium sp. CF136]
gi|398071926|gb|EJL63168.1| hypothetical protein PMI10_02470 [Flavobacterium sp. CF136]
Length = 230
Score = 41.2 bits (95), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Query: 566 DARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYL--QHRLSILMKEEKKSL 623
+ARGVF ++++ +FN+G DY S + S L+E L Q R+S ++KE+ +
Sbjct: 13 EARGVFKSEKHNCFATFNFG--DYQDLSRKPFGSLQILNEEILGPQQRISRVIKEKTNVI 70
Query: 624 QAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEKVLVYRNPGLHFGDIHVLKA 683
LP+ +D + L+ ++ +I D ++S+E Y N + + IH K
Sbjct: 71 ---ILPLFGGIEYKDNLDDSEFLRVEQIRVITADAEMSFEVFNPYENENVSYLQIHFQKG 127
>gi|449703094|gb|EMD43603.1| Hypothetical protein EHI5A_007360 [Entamoeba histolytica KU27]
Length = 857
Score = 40.8 bits (94), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 83/196 (42%), Gaps = 48/196 (24%)
Query: 538 LSRNLIA-LLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARM 596
+S N++A LL YG P++ F + ++ + + N+ + Y +D ++
Sbjct: 410 ISHNVVAMLLHYGVKPDLLFSKVEKHVSEKKITSIMTRDNS---QYLYSIIDQQEPFSKA 466
Query: 597 ILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCI-IL 655
+ I++ + LQ + P+ SY L+G +DP GIL+ E+ I ++
Sbjct: 467 LKEHINISQLLLQRHI----------------PLYPSYRLVGVLDPYGILEPGEIAIGLV 510
Query: 656 KDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDF-VGTSKYAIFFPCNGPRSLADEI 714
K+ +S+ K + N DIH L L+ F + SKY I
Sbjct: 511 KNILISFGKTALVANN----NDIHPL------SLKRFIINNSKYPI-------------- 546
Query: 715 AGGDFDGDMYFVSRNP 730
DF G + F S++P
Sbjct: 547 --NDFTGCIIFSSKDP 560
>gi|353241842|emb|CCA73629.1| hypothetical protein PIIN_07582 [Piriformospora indica DSM 11827]
Length = 1021
Score = 40.4 bits (93), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 13/147 (8%)
Query: 607 YLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCI----ILKDGQ--- 659
+LQ +L + +KS ++ + S Y M D +G L + I+ DG
Sbjct: 566 FLQCWKRLLKRALRKSSIDFRISFSSSAYCMLVPDFSGQLPEGYISFTPPEIVYDGDNRA 625
Query: 660 VSWEK--VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGG 717
V + K VL+ R+P L DI ++ + L+ G I G R LAD ++GG
Sbjct: 626 VDFTKGEVLIGRHPALLPTDIQKVRLANITSLKQKRGL----IICSTQGSRPLADLLSGG 681
Query: 718 DFDGDMYFVSRNPELLKHFKESERWMS 744
D+DGD + + ++ F+ ++ +S
Sbjct: 682 DYDGDEAIIIWDRNVVNAFQNADTQLS 708
>gi|183233627|ref|XP_655587.2| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
gi|169801481|gb|EAL50201.2| hypothetical protein EHI_179800 [Entamoeba histolytica HM-1:IMSS]
Length = 819
Score = 40.4 bits (93), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 83/196 (42%), Gaps = 48/196 (24%)
Query: 538 LSRNLIA-LLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARM 596
+S N++A LL YG P++ F + ++ + + N+ + Y +D ++
Sbjct: 372 ISHNVVAMLLHYGVKPDLLFSKVEKHVSEKKITSIMTRDNS---QYLYSIIDQQEPFSKA 428
Query: 597 ILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCI-IL 655
+ I++ + LQ + P+ SY L+G +DP GIL+ E+ I ++
Sbjct: 429 LKEHINISQLLLQRHI----------------PLYPSYRLVGVLDPYGILEPGEIAIGLV 472
Query: 656 KDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDF-VGTSKYAIFFPCNGPRSLADEI 714
K+ +S+ K + N DIH L L+ F + SKY I
Sbjct: 473 KNILISFGKTALVANN----NDIHPL------SLKRFIINNSKYPI-------------- 508
Query: 715 AGGDFDGDMYFVSRNP 730
DF G + F S++P
Sbjct: 509 --NDFTGCIIFSSKDP 522
>gi|218188371|gb|EEC70798.1| hypothetical protein OsI_02249 [Oryza sativa Indica Group]
Length = 307
Score = 39.7 bits (91), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 806 EKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLG 865
E AM E + L + A+D PK + + +P LK + +P +M +++ S++S +LG
Sbjct: 48 EYGAMDEKCIHLAELAATAVDFPKTGKLAI-MPPHLKPKVYPDFMGKEDGQSYKSEKILG 106
Query: 866 TIYNTVK 872
+Y +++
Sbjct: 107 RLYRSIQ 113
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,743,632,674
Number of Sequences: 23463169
Number of extensions: 673841997
Number of successful extensions: 1549469
Number of sequences better than 100.0: 709
Number of HSP's better than 100.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 585
Number of HSP's that attempted gapping in prelim test: 1547314
Number of HSP's gapped (non-prelim): 1178
length of query: 1015
length of database: 8,064,228,071
effective HSP length: 153
effective length of query: 862
effective length of database: 8,769,330,510
effective search space: 7559162899620
effective search space used: 7559162899620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 82 (36.2 bits)