BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001771
(1015 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O82190|RDR3_ARATH Probable RNA-dependent RNA polymerase 3 OS=Arabidopsis thaliana
GN=RDR3 PE=3 SV=2
Length = 992
Score = 947 bits (2449), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/1022 (52%), Positives = 692/1022 (67%), Gaps = 51/1022 (4%)
Query: 7 VSQQGVVSLPLSVEQLISKIYTEQN-KLPPDDGARRSLASLGEDAALDVLRTIASDKIKY 65
VS + ++L SVE ++ KIY + N +LP RR L+S+ E+ AL+ LR + +
Sbjct: 9 VSPRSEIALLGSVETMLEKIYEKHNHRLPISVETRRKLSSISEELALETLRKVFNKPYLK 68
Query: 66 SFSGYINYLVKKRNN-NGSPLKRVCFSPSSPQQNRSPVTVTTVRLLNLPQGTDYVVKQSP 124
+ G I Y VK +GSP R+ S Q R+P K+S
Sbjct: 69 TLDGLIMYFVKGTVTVDGSP--RLSPGESPVQSPRTPA------------------KKSC 108
Query: 125 VADQQPRGSPMSSISHAMRHRAS-----IPQYVALGELEFRKAFLILSYIGENSL-EEVI 178
A Q + M+ + IP +ALGELEF+KAFL+LSYIG SL EEVI
Sbjct: 109 RASQDVSLDLETPSPKFMKREENGGSKYIPPLLALGELEFKKAFLLLSYIGGESLVEEVI 168
Query: 179 TADEIRGMRDLQMARFESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTF 238
+ D+IR +DL M +E+ VW +LG++ S ++RR L+ DSG TH Y CH++T G+ F
Sbjct: 169 SGDQIRKWKDLPMVSYEAAVWNRLGQRYCSPKERRRPLEGDSGMTHYYQCHVATDGSYKF 228
Query: 239 KGPYLNQTRTHLQRELGDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIAREGILVGLRC 298
KG L T THL + LGDDN+L VKFD+ LG ND YS Y IA+ GI+VGLR
Sbjct: 229 KGHLLENTGTHLHKVLGDDNVLTVKFDKVLG---VETYCNDLYSTYKGIAKNGIMVGLRR 285
Query: 299 YHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVR 358
Y FFVFKDGGKEEKKKD ST VKCYF+R +S+A IDM YI +GK++HEAR FMHV
Sbjct: 286 YRFFVFKDGGKEEKKKDVSTKGVKCYFIRTDSTASIDMQNPYIFAGKSMHEARMHFMHVN 345
Query: 359 TVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDG-NVVYKDGEALIHTDG 417
T+SS+ NYMSR SLILSKT LEVD + I E+I+D C D+D +V+ K+G+ IH+DG
Sbjct: 346 TLSSLPNYMSRFSLILSKTKTLEVDMTGITFEQIDDIHCHDQDDKDVLDKNGKPCIHSDG 405
Query: 418 TGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVR 477
TG+ISEDLA CP ++K K + RS + + NF EPPLL+Q R
Sbjct: 406 TGYISEDLARMCPVNIFKGK------SMRSNNIQSKNLNFEGQGPCGQ---EPPLLIQFR 456
Query: 478 LFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTY 537
+FYNG AVKGT L NKKLPP+T+Q+RPSMIKV DR LS+ TFNSLEVV TSN PRK
Sbjct: 457 IFYNGYAVKGTFLTNKKLPPRTVQVRPSMIKVYEDRTLSNLSTFNSLEVVTTSNPPRKAR 516
Query: 538 LSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMI 597
LSRNL+ALLSYGGVP FFL+ILRN L++++ +F ++R A K + NYG Y +A MI
Sbjct: 517 LSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAINYGDDQY---TADMI 573
Query: 598 LSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKD 657
L GI LDEPYL+ RLS L+K E+ +L+AG+ P+ ESYY+MGTVDPTG LK NE+C+IL
Sbjct: 574 LVGIPLDEPYLKDRLSYLLKTERNALKAGRFPIDESYYIMGTVDPTGELKENEICVILHS 633
Query: 658 GQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGG 717
GQ+S + VLVYRNPGLHFGDIHVLKATYVK LED+VG +K+A+FFP GPRSL DEIAGG
Sbjct: 634 GQISGD-VLVYRNPGLHFGDIHVLKATYVKALEDYVGNAKFAVFFPQKGPRSLGDEIAGG 692
Query: 718 DFDGDMYFVSRNPELLKHFKESERWMSTSK--NLSANKRLIDFSLEELESELFKLFLNTR 775
DFDGDMYF+SRNP+LL+HFK SE W+S+SK + ++ + S EELE ELFK+FL R
Sbjct: 693 DFDGDMYFISRNPKLLEHFKPSEPWVSSSKPSKIYCGRKPSELSEEELEEELFKMFLKAR 752
Query: 776 FCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKV 835
FC + +AADCW +MD FLTLGDESA+EK K+N+L+LI+IYYDALDAPKK G KV
Sbjct: 753 FCKRDVIGMAADCWLGIMDPFLTLGDESAKEKYERKKNILKLIDIYYDALDAPKK-GAKV 811
Query: 836 EVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCF-DDGV 894
++P DL+++ FP YM RD F STS+LG I++TV S+ A + +EI KL F D+ V
Sbjct: 812 DLPPDLEIKNFPHYMERDPKRDFRSTSILGLIFDTVDSHNAEEPPPSEISKLWYFEDEPV 871
Query: 895 PEACMTKWKGYYDQYRWEMKEA-IDKCTVEREEAAELVIEKYKQILYGAAEFEQSTRTLE 953
P++ M K+ +Y+ YR EM +A ++ V+R + VI++YKQ YGAA FE S ++LE
Sbjct: 872 PKSHMDKFTSWYENYRSEMSQAMMETDKVKRNQLTNEVIQRYKQDFYGAAGFEDSNKSLE 931
Query: 954 EIYNEALAIYNITYDLAASRRQVSYCSFAWRVAGSALRKFYARRQGDRSMLCSASVLREI 1013
E+Y +ALA+YN+ YD A + V+ C+FAW VAG L KFY ++ D+S++ S SVL+++
Sbjct: 932 ELYPQALALYNVVYDYAI-QEGVAKCTFAWNVAGPVLCKFYLKKTKDKSVVASTSVLKKL 990
Query: 1014 CG 1015
G
Sbjct: 991 LG 992
>sp|O82188|RDR5_ARATH Probable RNA-dependent RNA polymerase 5 OS=Arabidopsis thaliana
GN=RDR5 PE=2 SV=2
Length = 977
Score = 907 bits (2343), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/1022 (51%), Positives = 680/1022 (66%), Gaps = 73/1022 (7%)
Query: 13 VSLPLSVEQLISKIYTEQNKLPPDDGARRSLASLGEDAALDVLRTIASDK--IKYSFSGY 70
++L +E + IY + N P +D R+ L+S+ E+ +++R + S + + Y+ +
Sbjct: 10 IALSGRIETALENIYRKHNLTPINDETRQRLSSIPENLGFELVRKVFSLQAGLIYNLDSF 69
Query: 71 INYLVKKRNN----NGSPLKRVCFSPSSPQQNRSPVTVTTVRLLNLPQGTDYVVKQSPVA 126
I V K N G P SPS +R V Q ++
Sbjct: 70 I---VSKVNQAVSFTGYPQPANSLSPSGRHVSR--------------------VLQEEMS 106
Query: 127 DQQPRGSPMSSISHAMRHRASIPQYVALGELEFRKAFLILSYIGENSLEEVITADEIRGM 186
SP S S IPQ VALGELEF+K FL+LSYI + +VITADEIR
Sbjct: 107 VDSDAPSPKSLKSEDKGGSLHIPQLVALGELEFKKVFLLLSYIPGQHVGQVITADEIRLW 166
Query: 187 RDLQMARFESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFK------G 240
+DL M +E+ VW++LGR Q+DRRM L+WDSGKTH Y C+++ G+ TFK G
Sbjct: 167 KDLPMVEYEAAVWDRLGRHYCPQKDRRM-LQWDSGKTHYYQCNVAPNGSYTFKVLSALQG 225
Query: 241 PYLNQTRTHLQRELGDDNILLVKFDEELGGHRSSNNWN-DSYSKYNEIAREGILVGLRCY 299
P L T THL + LGDDN+L VKF + +SS+ ++ D Y Y IA+ GI++GLR Y
Sbjct: 226 PLLEHTGTHLHKVLGDDNVLTVKFADV---QKSSSTYSIDHYFTYKGIAKNGIMIGLRRY 282
Query: 300 HFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRT 359
FFVFKDGGKEEKKKD ST VKCYF+R +S+AF DM YIL+GK+++EAR FMHV
Sbjct: 283 QFFVFKDGGKEEKKKDLSTKKVKCYFIRTDSTAFYDMQNPYILTGKSIYEARMHFMHVHR 342
Query: 360 VSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDG-NVVYKDGEALIHTDGT 418
++ANYM+R SLILSKT LEVD + I ++I+D C D+DG +V+ K+ + IH+DGT
Sbjct: 343 APTLANYMARFSLILSKTKTLEVDMTGITFDQIDDIHCHDQDGKDVLDKNKKPCIHSDGT 402
Query: 419 GFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRL 478
G+ISEDLA CP ++K KC +S + E+ Y +PPLL+Q R+
Sbjct: 403 GYISEDLARMCPLNIFKGKCLRSESIQ------------------EACYQDPPLLIQFRM 444
Query: 479 FYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYL 538
FY+G AVKGT LLNKKL P+T+Q+RPSMIKV D LS+ TFN+LEVV TSN P++T L
Sbjct: 445 FYDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPKRTKL 504
Query: 539 SRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMIL 598
S+NL+ALLSYGG+P FFLDIL N L++++ +F NKR AL + NYG MD D +A+MIL
Sbjct: 505 SKNLVALLSYGGIPNEFFLDILLNTLEESKSIFYNKRAALNAALNYGEMD-DQNAAQMIL 563
Query: 599 SGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDG 658
GI LDEP+L++ LSIL+K EK L+AGKLPVTESYYLMGTVDPTG LK +EVC+IL+ G
Sbjct: 564 VGIPLDEPHLKNYLSILLKTEKNDLKAGKLPVTESYYLMGTVDPTGALKEDEVCVILESG 623
Query: 659 QVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGD 718
Q+S E VLVYRNPGLHFGDIH+LKATYVK LE++VG SK+A+FFP GPRSL DEIAGGD
Sbjct: 624 QISGE-VLVYRNPGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGD 682
Query: 719 FDGDMYFVSRNPELLKHFKESERWMSTSKNLSAN--KRLIDFSLEELESELFKLFLNTRF 776
FDGDMYF+SRNPELL++FK SE W+S + +N + S EELE ELF++FL F
Sbjct: 683 FDGDMYFISRNPELLENFKPSEPWVSLTPPSKSNSGRAPSQLSPEELEEELFEMFLTAGF 742
Query: 777 CPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVE 836
SN +AAD W +MDRFL LGD+ AEEKA MK+ ML LI+IYYDALDAPKK G KV
Sbjct: 743 HASNVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKK-GDKVY 801
Query: 837 VPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRS-VTEIWKLPCF-DDGV 894
+P LK + FP YM RD+ F+STS+LG I++ VKS + S +EI KLPCF D+ V
Sbjct: 802 LPNKLKPDIFPHYMERDK--KFQSTSILGLIFDFVKSQTTEEPSPSSEISKLPCFEDEPV 859
Query: 895 PEACMTKWKGYYDQYRWEMKEAIDKCTVEREEAAELVIEKYKQILYGAAEFEQSTRTLEE 954
E M K + +YD YR EM +A+ +++E+A VI++YKQ YGAA FE S ++LEE
Sbjct: 860 SEFHMQKCRLWYDNYRTEMTQAM---KTDKDESANEVIQRYKQEFYGAAGFEDSKKSLEE 916
Query: 955 IYNEALAIYNITYDLAASRRQVSYCSFAWRVAGSALRKFYA-RRQGDRSMLCSASVLREI 1013
+Y +ALA+Y I YD A VS C F W+VAG L +FY ++ ++ ++C+ SVL+E+
Sbjct: 917 LYPQALALYKIVYDYAI-HAGVSKCRFVWKVAGPVLCRFYLNKKMQEKCLVCAPSVLKEL 975
Query: 1014 CG 1015
G
Sbjct: 976 WG 977
>sp|O82189|RDR4_ARATH Probable RNA-dependent RNA polymerase 4 OS=Arabidopsis thaliana
GN=RDR4 PE=3 SV=2
Length = 927
Score = 855 bits (2209), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/960 (49%), Positives = 629/960 (65%), Gaps = 58/960 (6%)
Query: 13 VSLPLSVEQLISKIYTEQNKLPPDD-GARRSLASLGEDAALDVLRTIASDKIKYSFSGYI 71
++L SVE ++ K+Y + N PP RR L+S+ E+ AL+ LR + + + G I
Sbjct: 20 IALLGSVETMLEKVYGKHNHHPPIKVETRRRLSSISEELALETLRKVLNMPNVKTLDGII 79
Query: 72 NYLVKKRNN-NGSPLKRVCFSPSSPQQNRSPVTVTTVRLLNLPQGTDYVVKQSPVADQQP 130
Y + +GSP +S SP V+ P Q+ V+ +
Sbjct: 80 IYFLNDAVTVDGSPR---LWSGESP-----------VQFPRTPGKKSCRASQAEVSLDRE 125
Query: 131 RGSPMSSISHAMRHRASIPQYVALGELEFRKAFLILSYIGENSLEEVITADEIRGMRDLQ 190
SP I +ALGELEF+KAFL+L+Y+G SL EVI+ DEIR +DL
Sbjct: 126 DPSPKFLRGDENGESKHISLLLALGELEFKKAFLLLTYLGGKSLGEVISGDEIRQWKDLP 185
Query: 191 MARFESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHL 250
M +E VW KLG Q + RM L+ DSGKTH Y CH++ G+ KG +L T THL
Sbjct: 186 MVAYERAVWFKLG-----QNEERMQLESDSGKTHYYQCHVAPDGSYRLKGYFLENTGTHL 240
Query: 251 QRELGDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKE 310
+ LGDDN+L V+FD+ + S ++ YSKY EIA+ GI+VGLR Y FFVFKDGGK
Sbjct: 241 HKVLGDDNVLTVRFDQL---PKESTYCDNPYSKYKEIAKNGIMVGLRRYQFFVFKDGGKA 297
Query: 311 EKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRL 370
EKKK ST VKCYF+R S+A DM YILSG ++HEAR FMHV T+ S ANYM+R
Sbjct: 298 EKKKRNSTKQVKCYFIRTGSTASSDMENPYILSGMSIHEARMHFMHVHTLPSPANYMARF 357
Query: 371 SLILSKTMKLEVDFSRINIERIEDEPCRDKDGN-VVYKDGEALIHTDGTGFISEDLALKC 429
SLILSKT KLEVD + I + +I+D C D+ N V+ K+G+ IH+DGTG+ISEDLA C
Sbjct: 358 SLILSKTKKLEVDMTEITVMQIDDIHCHDQSNNDVLDKNGKPRIHSDGTGYISEDLARMC 417
Query: 430 PTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTL 489
P ++K K ++ + + + EPPLL+Q+R+F +G+AVKG
Sbjct: 418 PLNIFKGKSMRSNNIQGTCVQ------------------EPPLLIQIRMFNDGSAVKGIF 459
Query: 490 LLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYG 549
LLNK LPPQT+Q+RPSMIKV D++LS+ TFNSLEVV TSN P++ LS+NL+ALLSYG
Sbjct: 460 LLNKNLPPQTVQVRPSMIKVYKDKNLSNFSTFNSLEVVTTSNPPKRAKLSKNLVALLSYG 519
Query: 550 GVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQ 609
GVP FFLDIL N L+ + +F R A K + +YG MD D + +MI++GI LDEPYL+
Sbjct: 520 GVPNDFFLDILLNTLEKKKTIFFKVRAAGKAALHYGNMD-DKNALQMIMAGIPLDEPYLK 578
Query: 610 HRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEKVLVYR 669
H LS L+K EK L+AGKLP+ ESYYLMGTVDPTG LK +EV G + VLVYR
Sbjct: 579 HYLSKLLKLEKDDLKAGKLPIDESYYLMGTVDPTGELKEDEVS-----GLAKSQDVLVYR 633
Query: 670 NPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRN 729
NPGLHFGDIH+LKATYVK LE +VG SKY +FFP GPRSL DEIAGGDFDGDMYF+SRN
Sbjct: 634 NPGLHFGDIHILKATYVKSLEQYVGNSKYGVFFPQKGPRSLGDEIAGGDFDGDMYFISRN 693
Query: 730 PELLKHFKESERWMSTS--KNLSANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAAD 787
P+LL+H+K SE W+S+S + ++ + S E+LE ELFK+FL T F PS+ AAD
Sbjct: 694 PKLLEHYKPSEPWVSSSPRSKIYTGRQPSELSPEQLEEELFKIFLKTGFSPSSVIGQAAD 753
Query: 788 CWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFP 847
W A+MDRFLTLGDE+ +EKA MK+ ML+L +IYYDA+DAP K+G +V +P D+KV+ FP
Sbjct: 754 SWLAIMDRFLTLGDENVKEKAEMKKKMLKLTDIYYDAIDAP-KTGTEVNLPLDVKVDLFP 812
Query: 848 CYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCF-DDGVPEACMTKWKGYY 906
YM R++ +F+STS+LG I++TV + A D + + I KL CF D+ V E M K K ++
Sbjct: 813 HYMERNK--TFKSTSILGLIFDTVDFHNAEDTTPSGISKLQCFEDEPVSEFDMEKCKLWH 870
Query: 907 DQYRWEMKEAIDKCTVEREEAAELVIEKYKQILYGAAEFEQSTRTLEEIYNEALAIYNIT 966
YR EM +A++ + +++ VI+KYKQ Y AA F++S + LEE+Y +ALA+YN+T
Sbjct: 871 KDYRKEMCQAMNS---DDDDSCNEVIQKYKQEFYSAAGFKESKKILEELYPKALALYNVT 927
>sp|Q5QMN5|RDR3_ORYSJ Probable RNA-dependent RNA polymerase 3 OS=Oryza sativa subsp.
japonica GN=RDR3 PE=2 SV=2
Length = 1153
Score = 783 bits (2021), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/961 (44%), Positives = 607/961 (63%), Gaps = 83/961 (8%)
Query: 93 SSPQQNRSPVTVTTVRLLNLPQGTDYVVKQSPV-ADQQPRGSPMSSISHAMRHRASIPQY 151
S+P++ +P +V + L V SP+ A Q + + +A+R AS PQ
Sbjct: 234 STPRRVSTPSSVQDISRLIENMAGPSVSPPSPITAMPQNPTTTCHTTDNALREAAS-PQM 292
Query: 152 VALGELEFRKAFLILSYIGENSLEEVITADEIRGMRDLQMARFESEVWEKLGRKNISQED 211
+AL EL FRK F++ +Y+ +E V++ D IR ++ L MA+FES++W G K I+ D
Sbjct: 293 LALEELGFRKIFMVFAYLASEKIENVLSVDYIRSLKFLSMAQFESQIWRTFGHKYIAASD 352
Query: 212 RRMSLKWDSGKTHMYHCHISTKGNCT---FKGPYLNQTRTHLQRELGDDNILLVKFDEEL 268
R +L D G T +YHC+++ +G+ FKGPY+ TRTHLQ+ +GDDN+L+VKF +L
Sbjct: 353 RAKNLDSDPGMTKVYHCNVAIRGDTVVKIFKGPYIENTRTHLQKVVGDDNVLVVKFMGKL 412
Query: 269 GGHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEK-------KKDPSTSPV 321
++ +++ Y+++A +GI++GLR Y FFV+KDGGKEEK K+ TSPV
Sbjct: 413 SDTKT--DFSTYCEHYHKVAEDGIVLGLRRYRFFVYKDGGKEEKLKQEKIEDKNKCTSPV 470
Query: 322 KCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLE 381
CYFVR ES +M YILSG+TV +AR +FMH+ + ++A YM+R +LILSKT+ +
Sbjct: 471 MCYFVRTESG--WNMDEPYILSGRTVGQARELFMHISSAPTLAKYMARFALILSKTITWD 528
Query: 382 VDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTND 441
D S + + RI+DEPC D+ GNVV+KD E LIHTDGTG +S DLAL CPT ++K K
Sbjct: 529 ADLSAVYVRRIKDEPCMDRHGNVVHKDQEPLIHTDGTGLVSVDLALNCPTSIFKGKFLKP 588
Query: 442 DSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQ 501
PLLMQ RLFYNG+AVKGT+L++++LPP TI
Sbjct: 589 Q----------------------------PLLMQFRLFYNGSAVKGTVLVDRRLPPATIL 620
Query: 502 IRPSMIKVK---------------------ADRDLSDGQTFNSLEVVKTSNQPRKTYLSR 540
IRPSM+K++ A + LS Q+ NS E+V TSN+PR+T SR
Sbjct: 621 IRPSMVKIETHPELSGVRSVNSSEIVSARNAKKSLSGVQSVNSFEIVSTSNRPRRTLTSR 680
Query: 541 NLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSG 600
LI LL YGGVPE +FL++L++A++ A + +AL+++F+Y M+ D SARMILSG
Sbjct: 681 FLITLLCYGGVPEEYFLELLQSAIEGAENACYDYEDALRIAFSYADME-DSMSARMILSG 739
Query: 601 ISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQV 660
I L+E YLQHRL + ++E+K ++ GK+P+ E YYLM T DPTG L+ NEVC+IL++GQ
Sbjct: 740 IPLEESYLQHRLDFMAQQERKGIKQGKIPIDECYYLMDTTDPTGTLRPNEVCVILENGQF 799
Query: 661 SWEKVLVYRNPGLHFGDIHVLKATYVKELE-DFVGTSKYAIFFPCNGPRSLADEIAGGDF 719
S + VLVY++PGLHFGDIHVLKATY+++LE ++VG +KYAI FP +GPRSLADE+A DF
Sbjct: 800 SGD-VLVYKHPGLHFGDIHVLKATYIRDLEKEYVGYAKYAILFPISGPRSLADEMANSDF 858
Query: 720 DGDMYFVSRNPELLKHFKESERWM-STSKNLSANKRLIDFSLEELESELFKLFLNTRFCP 778
DGD+Y+VS+NP+LL+HFK SE W+ + + K+ D + +LE LF FL TRF P
Sbjct: 859 DGDIYWVSKNPKLLEHFKPSEPWVQAIKPKKTKQKKPQDCNESKLERLLFHEFLKTRFTP 918
Query: 779 SNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVP 838
S A AAD W A MDR LT + E+K ++E ML+L+++YY ALDAP K+G KV +P
Sbjct: 919 SFALGTAADSWLAYMDRLLTDSLDEIEKK-LIEEKMLKLVDLYYLALDAP-KTGNKVNIP 976
Query: 839 EDLKVEKFPCYMRRDESVSFESTSVLGTIYNT---VKSYEAVDRSVTEIWKLPCF-DDGV 894
DL V+++P +M R S S+ S+S+LG IY+ V+S + + + LPCF +
Sbjct: 977 SDLMVKQYPHFMGR--SFSYHSSSILGQIYDKAEDVESLRSCNVQPIGVSLLPCFMEREA 1034
Query: 895 PEACMTKWKGYYDQYRWE----MKEAIDKCTVEREEAAELVIEKYKQILYGAAEFEQSTR 950
P A W+ Y++Y + + +DK ER + + EKYK +LY A+EFEQ+ R
Sbjct: 1035 PPAARHLWQHRYEEYLTDSTMLYRAMVDK--EERNMKFQELYEKYKHMLYDASEFEQTQR 1092
Query: 951 TLEEIYNEALAIYNITYDLAASRRQVSYCSFAWRVAGSALRKFYARRQGDRSMLCSASVL 1010
+++++EA IY I Y+ A S C FAW+VAG AL FYA + + LCS +L
Sbjct: 1093 DPDDVFSEACVIYQIVYEKARWSNDASRCGFAWKVAGRALCHFYALKNEGDTALCSLPLL 1152
Query: 1011 R 1011
R
Sbjct: 1153 R 1153
Score = 37.4 bits (85), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 39 ARRSLASLGEDAALDVLRTIASDKIKYSFSGYINYLVK------KRNNNGSP 84
ARR LA LGE A VLR +A + + G+I YL K +R+ G P
Sbjct: 39 ARRHLAVLGEAGAARVLRAVAESRRVRTLPGFIKYLAKREAAITRRDARGVP 90
>sp|Q5QMN4|RDR4_ORYSJ Probable RNA-dependent RNA polymerase 4 OS=Oryza sativa subsp.
japonica GN=RDR4 PE=2 SV=2
Length = 1183
Score = 755 bits (1950), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/921 (45%), Positives = 584/921 (63%), Gaps = 82/921 (8%)
Query: 149 PQYVALGELEFRKAFLILSYIGENS--------------LEEVITADEIRGMRDLQMARF 194
PQ +ALGELEFRK F+I +Y+ N +E+V++ D IR ++ + MA+F
Sbjct: 277 PQMLALGELEFRKIFMIFAYLSWNKKGVKPPLSTPKSSKIEDVLSVDSIRSLKSMSMAQF 336
Query: 195 ESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCT---FKGPYLNQTRTHLQ 251
ES +W G NIS DR +L G + +YHC++ +G FKGPY+ RTHLQ
Sbjct: 337 ESRIWSTFGHDNISSSDRAKNLDSGPGMSKVYHCNVEIRGGTVVKIFKGPYIENRRTHLQ 396
Query: 252 RELGDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEE 311
+ LGDDN+L+VKF E + + + Y+++A EGI++GLRCY FF++KDGGKE
Sbjct: 397 KVLGDDNVLVVKFMEI--SSDTETDLSTYLEHYHKVAEEGIVLGLRCYRFFLYKDGGKEN 454
Query: 312 KKKDPS--------TSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSV 363
K K+ + TS V+CYFVR ES +M YILSG+T+ +AR +FMH+RTV ++
Sbjct: 455 KMKEENREEENKKCTSSVRCYFVRTESG--WNMDEPYILSGRTIGQARDLFMHIRTVLTL 512
Query: 364 ANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGTGFISE 423
A YM R +LI+SKT+ L+VD S + ++ I+DEPC D+ G V++DGE LIHTDGTG ISE
Sbjct: 513 AKYMLRFALIVSKTITLDVDLSEVLVKLIDDEPCLDEHGKEVFRDGERLIHTDGTGLISE 572
Query: 424 DLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGT 483
DLA +KCT +S + ++ +++ + ++ E PLL+Q+RLFYNG+
Sbjct: 573 DLA---------QKCTYSNSKGKLLEPQDIVDCAASKLMGSNNTTEYPLLIQLRLFYNGS 623
Query: 484 AVKGTLLLNKKLPPQTIQIRPSMIKVK---------------------ADRDLSDGQTFN 522
AVKGT+L++K+LPP+TI IRPSM+K+K A + LS Q+ N
Sbjct: 624 AVKGTVLVDKRLPPRTIHIRPSMLKIKTYPELSGVQSVNSLDIVSARNAKKSLSGVQSVN 683
Query: 523 SLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSF 582
S E+V TSN+ +T+ S NLIALL YGGVPE FF+++L+ A+++A + AL ++F
Sbjct: 684 SFEIVSTSNRSGRTFTSNNLIALLHYGGVPEEFFMELLQTAIEEADNARFDYAGALNIAF 743
Query: 583 NYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDP 642
NY M+ D ARMILSGI L+E YLQ RL L E+K ++ GK+P+ + YYLMGT DP
Sbjct: 744 NYADME-DSMPARMILSGIPLEESYLQSRLDFLSLLERKGIKNGKIPIDDCYYLMGTADP 802
Query: 643 TGILKSNEVCIILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFF 702
TG L NEVC+IL GQVS + VLVY+ PGLH GDIHVLKATY ++E VG SK+AI F
Sbjct: 803 TGKLGPNEVCVILDYGQVSGD-VLVYKYPGLHPGDIHVLKATYSSDIEKVVGNSKHAILF 861
Query: 703 PCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWM-STSKNLSANKRLIDFSLE 761
P G RSLADE+A DFDGD+Y+VS NP+LL+HFK S+ W+ + + N + K DF+
Sbjct: 862 PTTGQRSLADEMANSDFDGDIYWVSLNPKLLEHFKPSKPWVPAITPNGTKQKGPEDFNES 921
Query: 762 ELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLG-DESAEEKAAMKENMLRLINI 820
ELE LF FL TRF PS A++ AA W MDR LT+ DES EK +++ ML+L+++
Sbjct: 922 ELERVLFHEFLKTRFAPSYARATAATNWLVYMDRLLTVSLDES--EKKLIEKKMLKLVDL 979
Query: 821 YYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTV---KSYEAV 877
YY ALDAPK G KV +P DL V+++P +M D S S+ S+S+LG IY+ K +
Sbjct: 980 YYLALDAPKM-GNKVNIPRDLMVKQYPHFM--DRSPSYHSSSILGKIYDKAGDPKPLRSD 1036
Query: 878 DRSVTEIWKLPCFDD-GVPEACMTKWKGYYDQY------RWEMKEAIDKCTVEREEAAEL 930
+ T I LPCF + VP A W+ Y++Y + + ++ ++ +E
Sbjct: 1037 NVQPTSISSLPCFAERDVPPAIKQLWQHRYNEYLADSSLLYAEEADEEEKKIKFQE---- 1092
Query: 931 VIEKYKQILYGAAEFEQSTRTLEEIYNEALAIYNITYDLAASRRQVSYCSFAWRVAGSAL 990
+ EKYK +LYGA+EFE++ R L+++++EA AIY I Y+ A S V+ C FAW+VAG AL
Sbjct: 1093 LYEKYKHLLYGASEFEETPRDLDDVFSEACAIYQIAYEKARSANNVARCGFAWKVAGRAL 1152
Query: 991 RKFYARRQGDRSMLCSASVLR 1011
FY + +++CS +LR
Sbjct: 1153 CHFYTVKNEGNAVVCSLQLLR 1173
Score = 38.9 bits (89), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 39 ARRSLASLGEDAALDVLRTIASDKIKYSFSGYINYLVK----KRNNNGSPLKRVCFSPSS 94
ARR LA LGE AA VLR I + + SG+I ++ KRN G P S
Sbjct: 38 ARRQLAELGEPAAARVLRAIGEARQVRTLSGFIRHMANQERMKRNARGIPTAHSAACISG 97
Query: 95 P 95
P
Sbjct: 98 P 98
>sp|Q8LHH9|SHL2_ORYSJ Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp.
japonica GN=SHL2 PE=2 SV=1
Length = 1218
Score = 120 bits (301), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 146/560 (26%), Positives = 242/560 (43%), Gaps = 119/560 (21%)
Query: 345 KTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNV 404
KT EA +M T +VA + +R+ S T ++ + + E + D +V
Sbjct: 552 KTTVEAIRKWMGRFTSKNVAKHAARMGQCFSST------YATVTMRPDEVDESFD---DV 602
Query: 405 VYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTE 464
V+ + I +DG G I+ DLAL+ +R +L N
Sbjct: 603 VHNE---YIFSDGIGKITPDLALEV------------------AERLQLTDN-------- 633
Query: 465 SHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQT-IQIRPSMIKVKADRDLSDGQTFNS 523
PP Q+R KG + + + T + +RPSM K +++ +
Sbjct: 634 -----PPSAYQIRF----AGFKGVIAVWQGHGDGTRLFLRPSMRKFESNHLV-------- 676
Query: 524 LEVVK-TSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSF 582
LEVV T QP +L+R +I LLS VP+ F + L + + S++ A +V
Sbjct: 677 LEVVSWTKFQP--GFLNRQIIILLSSLNVPDSIFWQMQETMLSNLNNILSDRDVAFEV-L 733
Query: 583 NYGGMDYDFTSARMILSGI-SLDEPYLQHRL-SILMKEEKKSLQAGKLPVTESYYLMGTV 640
D T+A M+ +G EP+L+ L +I + + L+ ++ V + +LMG +
Sbjct: 734 TTSCADDGNTAALMLSAGFEPRTEPHLKAMLLAIRSAQLQDLLEKARIFVPKGRWLMGCL 793
Query: 641 DPTGILKSNEVCIIL---------------------KDGQVSWEKVLVYRNPGLHFGDIH 679
D G+L+ + C I K+ +V V++ +NP LH GD+
Sbjct: 794 DELGVLEQGQ-CFIRATVPSLNSYFVKHGSRFSSTDKNTEVILGTVVIAKNPCLHPGDVR 852
Query: 680 VLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKES 739
+L+A V EL V + FP G R A+E +G D DGD+YFV+ + +L+ K+S
Sbjct: 853 ILEAVDVPELHHLVD----CLVFPQKGERPHANEASGSDLDGDLYFVTWDEKLIPPGKKS 908
Query: 740 ERWMSTS----KNLS---ANKRLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAV 792
M S K L + +IDF L+ + SE R C NA + AD
Sbjct: 909 WNPMDYSPPEAKQLPRQVSQHDIIDFFLKNMISENLG-----RIC--NAHVVHADL---- 957
Query: 793 MDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRR 852
E AM E + L + A+D PK + + +P LK + +P +M +
Sbjct: 958 ------------SEYGAMDEKCIHLAELAATAVDFPKTGKLAI-MPPHLKPKVYPDFMGK 1004
Query: 853 DESVSFESTSVLGTIYNTVK 872
++ S++S +LG +Y +++
Sbjct: 1005 EDGQSYKSEKILGRLYRSIQ 1024
>sp|Q7XM31|RDR2_ORYSJ Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp.
japonica GN=RDR2 PE=2 SV=1
Length = 1136
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 178/731 (24%), Positives = 298/731 (40%), Gaps = 163/731 (22%)
Query: 351 RYM--FMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKD 408
R+M F ++R+VS A M +L S EV R ++E I D + D
Sbjct: 495 RWMGHFENIRSVSKCAARMGQL--FSSSRQTFEV--LRWDVEVIPDIE--------ITTD 542
Query: 409 GEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYG 468
G I +DG G IS A + +V +D L + F
Sbjct: 543 GSKYIFSDGIGKISLRFAKRVAHHV-------------GLDPTNLPSAF----------- 578
Query: 469 EPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVK 528
Q+R Y G KG + ++ + + +RPSM K + S+ + N +
Sbjct: 579 ------QIR--YGG--YKGVIAIDP-MSSIDLSLRPSMKKFE-----SESRMLN----IT 618
Query: 529 TSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMD 588
+ ++ + Y++R +I+LLS G+ + F+ + ++ + + + +NK AL V GG +
Sbjct: 619 SWSKSQPCYVNREIISLLSTLGIRDEIFVAMQQDEMRETEEMLTNKEVALSVLGKLGGSE 678
Query: 589 YDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAG-----KLPVTESYYLMGTVDPT 643
T+ +M+L G EP + LS+++K +++ K+ V + L+G +D T
Sbjct: 679 TK-TAVKMLLQGY---EPSSEPYLSMILKAHQENRLTDIRTRCKIHVPKGRVLIGCLDET 734
Query: 644 GILKSNEVCIIL-------KDGQVSW------------EKVLVYRNPGLHFGDIHVLKAT 684
G+L+ +V I + KD S+ KV + +NP LH GDI VL+A
Sbjct: 735 GVLEYGQVYIRITKNSKEQKDSNQSYFYNDDGKTATVVGKVAITKNPCLHPGDIRVLEAI 794
Query: 685 YVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMS 744
Y +L V + FP G R +E +GGD DGD+YF++ + +L+ E+ +
Sbjct: 795 YDPDLVGMVD----CLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLI-----PEKVDT 845
Query: 745 TSKNLSANKRLID--FSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDE 802
+ R++D +LEE++ +N D A+ L D
Sbjct: 846 PMDYTATRPRIMDHVVTLEEIQKHFVDYMIN-------------DSLGAISTAHLIHADR 892
Query: 803 SAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTS 862
S + A L+L ++ A+D K+G E+P L+ ++P +M R E + S
Sbjct: 893 SPLK--ARSPECLQLATLHSMAVDF-AKTGAPAEMPRTLRPREYPDFMERWEKPMYISNG 949
Query: 863 VLGTIYNTV-----KSYEAVDRSVTEIWKLPCFDDG--VPEA-------------CMTKW 902
VLG +Y + KS ++ S + P +D VP + K
Sbjct: 950 VLGKLYRSAMGHMEKSGDSGALSSSSAQPSPTYDPDLEVPGSDEFLQAAEEYYELYEEKL 1009
Query: 903 KGYYDQYRWEMKEAIDKCTVERE------------EAAELVIEKYKQILYGAAEFEQSTR 950
+ YR E+++ I + + E + ++ + A + S+R
Sbjct: 1010 TTLMNYYRAELEDEILTGNIRNKMLYLKRDNKRYFEMKDRIVAAVDALHREARGWLLSSR 1069
Query: 951 TLEEIYNEALAIYNITYDLAASRRQVSYCSFAWRV--------AGSALRKFYARRQGDR- 1001
E+ A A Y +TY RR + SF W A S LR+ RRQ D
Sbjct: 1070 KEEDASRMASAWYRVTYH-PDRRRGKRFWSFPWIACDNLLAIKASSQLRR---RRQKDDD 1125
Query: 1002 -----SMLCSA 1007
M CSA
Sbjct: 1126 STAVVQMDCSA 1136
>sp|Q0DXS3|RDR1_ORYSJ Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp.
japonica GN=RDR1 PE=2 SV=2
Length = 740
Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 166/731 (22%), Positives = 292/731 (39%), Gaps = 153/731 (20%)
Query: 238 FKGPYLNQTRTHLQRELGD-DNILLVKF-DEELGGHRSSN-----------NWNDSYSKY 284
F GP +N + ++ D +N L + F DE+ R+++ N Y +
Sbjct: 11 FYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASGHDANRTALYKRV 70
Query: 285 NEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSG 344
+ +GI +G + + F F S+S ++ ++SA++ Q G
Sbjct: 71 LSVLSDGITIGGKNFEFLAF------------SSSQLR------DNSAWMFASRQ----G 108
Query: 345 KTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNV 404
+ R R + +VA Y +RL S + + + + +E I D
Sbjct: 109 LAASDIRTWMGDFRNIRNVAKYAARLGQSFSSSTE-TLKVQKYEVEEISD---------- 157
Query: 405 VYKDGEALIHTDGTGFIS----EDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDV 460
K+G + +DG G IS ++A+KC N
Sbjct: 158 -IKNGTQHVFSDGIGKISSAFANEVAMKC--------------------------NLKRF 190
Query: 461 ARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQT 520
A P Q+R Y G KG + ++ + +R SM+K ++D D
Sbjct: 191 A---------PSAFQIR--YGG--YKGVVAVDPT-SRWKLSLRKSMLKFQSDNITVDVLA 236
Query: 521 FNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKV 580
++ QP +L+R LI LLS GV + F A++ + ++ + A++
Sbjct: 237 YSKY-------QP--GFLNRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEA 287
Query: 581 SFNYGGMDYDFTSARMILSGISLD-EPYLQHRLSILMKEEKKSLQA-GKLPVTESYYLMG 638
+ ++L G D EPYL L + L+ ++ + + +MG
Sbjct: 288 IELMPMGEITNAVKELLLCGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMG 347
Query: 639 TVDPTGILKSNEVCIILKDGQVSWE------KVLVYRNPGLHFGDIHVLKATYVKELEDF 692
+D T LK +V I G + KV++ +NP LH GDI +L A V L
Sbjct: 348 CLDETRTLKYGQVFIRATSGVNDNDRFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHM 407
Query: 693 VGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSAN 752
+ FP GPR +E +G D DGD+YFVS +P L+ R ++ A
Sbjct: 408 FN----CVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPSLI-----PPRMVTPMDYTPAP 458
Query: 753 KRLI--DFSLEELESELFKLFLNTRF-CPSNAKSLAADCWQAVMDRFLTLGDESAEEKAA 809
+ D ++EE+E +N +NA + AD E+ A
Sbjct: 459 TETLDHDVTIEEVEEYFTNYIVNESLGMIANAHVVFAD----------------KEDLKA 502
Query: 810 MKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYN 869
+ L ++ A+D P K+G+ +P +L V+++P +M + + V++ES V+G +Y
Sbjct: 503 ESSPCIELAKLFSIAVDFP-KTGVPALIPPELHVKEYPDFMEKLDKVTYESKGVIGKLYR 561
Query: 870 TVKSY---------EAVDRSVTEIWKLPCFDDGVPEACMTKWKGYYDQYRWEMKEAIDKC 920
+K + E RS + ++D + EA K D+Y +++ +D
Sbjct: 562 EIKKHTPHIKHFTREVARRSYDTDMIVDGYEDYITEAMALK-----DEYDFKLGNLMDHY 616
Query: 921 TVEREEAAELV 931
++ E AE++
Sbjct: 617 GIKSE--AEII 625
>sp|Q9LQV2|RDR1_ARATH RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2
SV=1
Length = 1107
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 170/704 (24%), Positives = 290/704 (41%), Gaps = 135/704 (19%)
Query: 193 RFESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLN---QTRTH 249
R E + W G+ +S ++ D G +MY + T F GP +N + H
Sbjct: 340 RDEYKKWISKGKLPLSP-----TISLDDGLVYMYRVQV-TPARVYFSGPEVNVSNRVLRH 393
Query: 250 LQRELGDDNILLVKF-DEELGGHRS--------SNNWNDSYSKYNEIAREGILVGLRCYH 300
+ + +N L V F DE+L RS + Y + + R+GI++G + +
Sbjct: 394 YSKYI--NNFLRVSFVDEDLEKVRSMDLSPRSSTQRRTKLYDRIYSVLRDGIVIGDKKFE 451
Query: 301 FFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYM--FMHVR 358
F F S+S ++ E+SA++ I + H +M F H+R
Sbjct: 452 FLAF------------SSSQLR------ENSAWMFAPIDRITAA---HIRAWMGDFDHIR 490
Query: 359 TVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGEALIHTDGT 418
+VA Y +RL S + + +N+ E E D + + G + +DG
Sbjct: 491 ---NVAKYAARLGQSFSSSRET------LNVRSDEIEVIPDVE---IISLGTRYVFSDGI 538
Query: 419 GFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRL 478
G IS + A R + RK FS P Q+R
Sbjct: 539 GKISAEFA-------------------RKVARKCGLTEFS------------PSAFQIR- 566
Query: 479 FYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSN-QPRKTY 537
Y G KG + ++ + + +R SM K +++ L+V+ S QP Y
Sbjct: 567 -YGG--YKGVVAVDPN-SSKKLSLRKSMSKFESEN--------TKLDVLAWSKYQP--CY 612
Query: 538 LSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALK-VSFNYGGMDYDFTSARM 596
++R LI LLS GV + F R +D + ++ A + + G + + A +
Sbjct: 613 MNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHEALGLMAPGENTNILKA-L 671
Query: 597 ILSGISLD-EPYLQHRLSILMKEEKKSLQA-GKLPVTESYYLMGTVDPTGILKSNEVCII 654
IL G D EP+L L + L+ ++ ++ +MG +D T L+ +V +
Sbjct: 672 ILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQ 731
Query: 655 LKDGQVSWEK------VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPR 708
D + V+V +NP LH GD+ VL+A V L V + FP G R
Sbjct: 732 YSDPMRPGRRFIITGPVVVAKNPCLHPGDVRVLQAVNVPALNHMVD----CVVFPQKGLR 787
Query: 709 SLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRLIDFSLEELESELF 768
+E +G D DGD+YFV + EL+ + SE T + D ++EE+E
Sbjct: 788 PHPNECSGSDLDGDIYFVCWDQELVPP-RTSEPMDYTPEPTQILDH--DVTIEEVEEYFA 844
Query: 769 KLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAP 828
+N ++ + A+ A D+ E A + + L + A+D P
Sbjct: 845 NYIVN------DSLGIIANAHTAFADK---------EPLKAFSDPCIELAKKFSTAVDFP 889
Query: 829 KKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVK 872
K +G+ +P+ L V+++P +M + + ++ES +V+G ++ VK
Sbjct: 890 K-TGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVK 932
>sp|O82504|RDR2_ARATH RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana GN=RDR2 PE=3
SV=1
Length = 1133
Score = 107 bits (266), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 184/770 (23%), Positives = 308/770 (40%), Gaps = 169/770 (21%)
Query: 281 YSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQY 340
Y++ I EGI VG + + F F S S ++ V M +S
Sbjct: 451 YNRVLSILGEGITVGPKRFEFLAF------------SASQLRGNSVWMFAS-------NE 491
Query: 341 ILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDK 400
+ + + E F +R++S A M +L +T+ + ++E+I D
Sbjct: 492 KVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQ----DVEQIPDIE---- 543
Query: 401 DGNVVYKDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDV 460
V DG +DG G IS A + +KC S V
Sbjct: 544 ----VTTDGADYCFSDGIGKISLAFAKQVA-----QKC-----------------GLSHV 577
Query: 461 ARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQT 520
P Q+R Y G KG + +++ + + +R SM+K ++
Sbjct: 578 ----------PSAFQIR--YGG--YKGVIAVDRS-SFRKLSLRDSMLKFDSN-------- 614
Query: 521 FNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFF-------LDILRNALDDARGVFSN 573
N + V + +L+R +I LLS G+ + F L +L N L+D
Sbjct: 615 -NRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSMLGNMLED------- 666
Query: 574 KRNALKVSFNYGGMDYDFTSARMILSGIS-LDEPYLQHRLSILMKEEKKSLQA-GKLPVT 631
+ AL V G + +M+L G + EPYL L + + + L++ ++ V
Sbjct: 667 RDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRILVP 726
Query: 632 ESYYLMGTVDPTGILKSNEVCI-------------------ILKDGQVSWEKVLVYRNPG 672
+ L+G +D GIL+ +V + I ++ V KV+V +NP
Sbjct: 727 KGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVVIGKVVVTKNPC 786
Query: 673 LHFGDIHVLKATYVKELEDFVGTSKY--AIFFPCNGPRSLADEIAGGDFDGDMYFVSRNP 730
LH GDI VL A Y E+ Y I FP G R +E +GGD DGD +FVS +
Sbjct: 787 LHPGDIRVLDAIYEVHFEE----KGYLDCIIFPQKGERPHPNECSGGDLDGDQFFVSWDE 842
Query: 731 ELLKHFKESERWMSTSKNLSANK-RLIDFSLEELESELFKLFLNTRFCPSNAKSLAADCW 789
+++ SE M + + ++ RL+D + LE E+ K F++ + +D
Sbjct: 843 KIIP----SE--MDPPMDYAGSRPRLMDHDVT-LE-EIHKFFVDY---------MISDTL 885
Query: 790 QAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCY 849
+ L D E+ A + L L N++ A+D K +G E+P LK +FP +
Sbjct: 886 GVISTAHLVHADRDPEK--ARSQKCLELANLHSRAVDFAK-TGAPAEMPYALKPREFPDF 942
Query: 850 MRRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCFDDGVPEACMTKW----KGY 905
+ R E ++ S SV G +Y VKS A + E +D + EA + K +
Sbjct: 943 LERFEKPTYISESVFGKLYRAVKSSLAQRKPEAESEDTVAYDVTLEEAGFESFIETAKAH 1002
Query: 906 YDQYRWEMKEAIDKCTVEREEAAELVIEKYKQIL-------YGAAEFEQSTRTLEEIYNE 958
D Y ++ + EE I K K++ YG + ++ T ++++++ E
Sbjct: 1003 RDMYGEKLTSLMIYYGAANEEEILTGILKTKEMYLARDNRRYGDMK-DRITLSVKDLHKE 1061
Query: 959 AL------------------AIYNITYDLAASRRQVSYCSFAWRVAGSAL 990
A+ A Y +TY+ ++++ SF W V L
Sbjct: 1062 AMGWFEKSCEDEQQKKKLASAWYYVTYNPNHRDEKLTFLSFPWIVGDVLL 1111
>sp|Q9SG02|RDR6_ARATH RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana GN=RDR6 PE=1
SV=1
Length = 1196
Score = 96.7 bits (239), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 109/422 (25%), Positives = 191/422 (45%), Gaps = 63/422 (14%)
Query: 537 YLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARM 596
+L+R +I LLS GVP+ F D+ + L + + A +V + T+A M
Sbjct: 665 FLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEV-LTASCAEQGNTAAIM 723
Query: 597 ILSGISLD-EPYLQHRLSILMKEEKKSL-QAGKLPVTESYYLMGTVDPTGILKSNEVCII 654
+ +G EP+L+ LS + + L + ++ VT +LMG +D GIL+ + I
Sbjct: 724 LSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAGILEHGQCFIQ 783
Query: 655 LK--------------------DGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVG 694
+ D +V V + +NP LH GD+ +L+A V +L
Sbjct: 784 VSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRILEAVDVPQLHHMYD 843
Query: 695 TSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKR 754
+ FP G R +E +G D DGD+YFV+ + +L+ ++S M +A ++
Sbjct: 844 ----CLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMHYD---AAEEK 896
Query: 755 LIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENM 814
+ ++ ++ F A++LA + + + + D S E AM E
Sbjct: 897 SLGRAVN--HQDIIDFF---------ARNLANEQLGTICNAHVVHADRS--EYGAMDEEC 943
Query: 815 LRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVK-- 872
L L + A+D P K+G V +P LK + +P +M +++ +++S +LG +Y VK
Sbjct: 944 LLLAELAATAVDFP-KTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEV 1002
Query: 873 --------SYEAVDRSVT---EIWKLPCFDDGVPEA----CMTKWK--GYYDQYRWEMKE 915
S E+ D S + ++P F+D +PEA C+ + G QY+ + +E
Sbjct: 1003 YDEDAEASSEESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEE 1062
Query: 916 AI 917
I
Sbjct: 1063 EI 1064
>sp|O14227|RDR1_SCHPO RNA-dependent RNA polymerase 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rdr1 PE=1 SV=1
Length = 1215
Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 107/424 (25%), Positives = 182/424 (42%), Gaps = 63/424 (14%)
Query: 486 KGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNS-LEVVKTSNQPRKTYLSRNLIA 544
KG L L PP ++ + V R ++F+S LEV+K S + +L+ LI
Sbjct: 649 KGVLSL---APPTKLEYHQGNL-VFPRRSQDKFKSFHSTLEVIKIS-RFSNAHLNMQLIT 703
Query: 545 LLSYGGVPEIFFLDILRNALDDAR-GVFSNKRNALKVSFNYGGMDYDFTSARMILSG-IS 602
LL GV + FL++ R+ L + S +++ L + N A I +G +
Sbjct: 704 LLEGLGVEKTVFLELTRSQLSKMNESINSKQKSILMLRDNVDEYHSTLIIADFIQAGFLE 763
Query: 603 LDEPYLQHRLSI-------LMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSN------ 649
D+ + ++ L++ L+KE++ K+ V + YL+G D TG LK +
Sbjct: 764 RDDAFTENLLNLYYEWVLRLIKEKQ------KVSVPKGAYLLGVADETGTLKGHYDDAVL 817
Query: 650 ---EVCIILKDGQVSWEK--------------VLVYRNPGLHFGDIHVLKATYVKELEDF 692
E+ I + D S+ +V RNP LH GD+ V KA EL
Sbjct: 818 SVPEIFIQITDTSTSFGSYSTGKLKTRVIVGLCIVARNPSLHPGDVRVCKAVRCDELMHL 877
Query: 693 VGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSAN 752
K I FP G RS+ +GGD DGD Y V + LL + +S
Sbjct: 878 ----KNVIVFPTTGDRSIPAMCSGGDLDGDEYTVIWDQRLLPKIVNYPPLLESSP----- 928
Query: 753 KRLIDF-SLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMK 811
K+ IDF + L + + F+N + ++ L ++ W+A D +
Sbjct: 929 KKSIDFLEGKPLIDSVKEFFVN--YIKYDSLGLISNAWKAWAH------DHDNNPEGIFG 980
Query: 812 ENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTV 871
L L ++ A+D KSG+ ++ +++P +M++ ++ SF S + +G I+
Sbjct: 981 NVCLELAEMHSKAVDFA-KSGVACKMQAKYHPKRYPDFMQKTKTRSFRSETAVGKIFRYA 1039
Query: 872 KSYE 875
++
Sbjct: 1040 ARFQ 1043
>sp|O28608|ALADH_ARCFU Alanine dehydrogenase OS=Archaeoglobus fulgidus (strain ATCC 49558
/ VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=ala PE=1
SV=1
Length = 322
Score = 34.7 bits (78), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 9/105 (8%)
Query: 598 LSGISLDEPYLQH-------RLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNE 650
++ I D P Q + I++ + +++ G++ V S ++G D + E
Sbjct: 213 INAIGADGPGKQELDVEILKKAKIVVDDLEQAKHGGEINVAVSKGVIGVEDVHATI--GE 270
Query: 651 VCIILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGT 695
V LKDG+ S E++ ++ + GL D+ V K Y L VG+
Sbjct: 271 VIAGLKDGRESDEEITIFDSTGLAIQDVAVAKVVYENALSKNVGS 315
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 374,846,125
Number of Sequences: 539616
Number of extensions: 16218004
Number of successful extensions: 37785
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 37677
Number of HSP's gapped (non-prelim): 21
length of query: 1015
length of database: 191,569,459
effective HSP length: 128
effective length of query: 887
effective length of database: 122,498,611
effective search space: 108656267957
effective search space used: 108656267957
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)