Query 001772
Match_columns 1015
No_of_seqs 601 out of 2599
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 08:58:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001772.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001772hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1865 Ubiquitin carboxyl-ter 100.0 4.1E-71 8.8E-76 628.5 28.9 323 453-784 87-410 (545)
2 KOG0944 Ubiquitin-specific pro 100.0 1.6E-57 3.5E-62 520.6 18.9 339 417-784 254-762 (763)
3 cd02661 Peptidase_C19E A subfa 100.0 2.1E-55 4.5E-60 484.5 29.1 303 477-782 1-304 (304)
4 cd02663 Peptidase_C19G A subfa 100.0 3.6E-55 7.8E-60 486.3 27.5 279 479-782 1-300 (300)
5 cd02660 Peptidase_C19D A subfa 100.0 8.2E-55 1.8E-59 487.3 29.7 298 478-782 1-328 (328)
6 cd02668 Peptidase_C19L A subfa 100.0 1.4E-54 2.9E-59 486.6 28.5 288 479-782 1-324 (324)
7 cd02664 Peptidase_C19H A subfa 100.0 3.5E-54 7.7E-59 484.2 24.8 274 479-782 1-327 (327)
8 cd02671 Peptidase_C19O A subfa 100.0 9.1E-54 2E-58 481.7 25.9 272 475-782 22-332 (332)
9 cd02667 Peptidase_C19K A subfa 100.0 2E-53 4.3E-58 467.9 24.0 246 479-782 1-279 (279)
10 cd02657 Peptidase_C19A A subfa 100.0 7.1E-53 1.5E-57 467.5 26.6 283 479-782 1-305 (305)
11 cd02658 Peptidase_C19B A subfa 100.0 1.5E-52 3.2E-57 466.5 27.5 275 479-782 1-311 (311)
12 cd02659 peptidase_C19C A subfa 100.0 9.8E-52 2.1E-56 463.6 27.1 294 476-786 1-334 (334)
13 cd02669 Peptidase_C19M A subfa 100.0 6.8E-50 1.5E-54 466.2 25.2 285 475-782 117-440 (440)
14 COG5560 UBP12 Ubiquitin C-term 100.0 3.4E-48 7.3E-53 440.2 16.3 308 475-785 263-823 (823)
15 COG5533 UBP5 Ubiquitin C-termi 100.0 1.1E-46 2.3E-51 399.8 21.5 308 473-784 67-414 (415)
16 cd02662 Peptidase_C19F A subfa 100.0 1.5E-46 3.2E-51 405.1 22.3 210 479-782 1-240 (240)
17 COG5207 UBP14 Isopeptidase T [ 100.0 5E-45 1.1E-49 405.3 19.4 375 370-784 218-749 (749)
18 cd02674 Peptidase_C19R A subfa 100.0 3.4E-44 7.3E-49 381.2 19.8 220 479-782 1-230 (230)
19 COG5077 Ubiquitin carboxyl-ter 100.0 3.1E-44 6.8E-49 412.7 7.6 349 418-786 128-513 (1089)
20 KOG1868 Ubiquitin C-terminal h 100.0 4.8E-43 1E-47 415.5 13.4 310 475-787 299-649 (653)
21 cd02673 Peptidase_C19Q A subfa 100.0 1E-41 2.2E-46 368.7 19.9 238 480-782 2-245 (245)
22 PF00443 UCH: Ubiquitin carbox 100.0 7.7E-42 1.7E-46 364.7 18.2 249 477-781 1-269 (269)
23 KOG1866 Ubiquitin carboxyl-ter 100.0 1.9E-43 4.1E-48 406.6 5.9 311 475-801 93-451 (944)
24 cd02666 Peptidase_C19J A subfa 100.0 6E-41 1.3E-45 378.4 19.1 271 477-782 1-343 (343)
25 cd02665 Peptidase_C19I A subfa 100.0 2.5E-40 5.5E-45 353.1 17.3 217 479-782 1-228 (228)
26 cd02257 Peptidase_C19 Peptidas 100.0 2.4E-39 5.2E-44 339.7 21.7 235 479-782 1-255 (255)
27 KOG1867 Ubiquitin-specific pro 100.0 1.2E-39 2.5E-44 380.5 15.8 307 475-787 159-487 (492)
28 KOG1873 Ubiquitin-specific pro 100.0 4.6E-38 1E-42 363.7 7.8 306 475-784 203-877 (877)
29 cd02672 Peptidase_C19P A subfa 100.0 4.3E-36 9.2E-41 329.0 20.6 238 471-782 9-268 (268)
30 KOG4598 Putative ubiquitin-spe 100.0 4.3E-38 9.3E-43 358.1 1.9 274 475-790 85-447 (1203)
31 KOG1863 Ubiquitin carboxyl-ter 100.0 5.2E-36 1.1E-40 379.5 13.2 348 419-787 113-488 (1093)
32 KOG1870 Ubiquitin C-terminal h 100.0 2E-34 4.3E-39 357.3 13.8 306 475-785 244-842 (842)
33 PF13423 UCH_1: Ubiquitin carb 100.0 1.8E-32 4E-37 304.1 22.6 277 478-763 1-295 (295)
34 cd02670 Peptidase_C19N A subfa 100.0 1.6E-31 3.6E-36 287.7 16.1 195 479-782 1-241 (241)
35 KOG1864 Ubiquitin-specific pro 100.0 4E-31 8.6E-36 313.5 15.9 309 475-785 230-573 (587)
36 KOG1872 Ubiquitin-specific pro 99.9 6.5E-28 1.4E-32 271.2 6.9 295 475-784 103-469 (473)
37 KOG1871 Ubiquitin-specific pro 99.9 4.1E-26 9E-31 250.9 14.2 304 475-785 26-420 (420)
38 KOG2026 Spindle pole body prot 99.8 1.3E-20 2.7E-25 207.0 13.3 282 475-784 132-441 (442)
39 KOG1275 PAB-dependent poly(A) 99.8 3.7E-18 8E-23 202.2 14.6 302 470-781 492-860 (1118)
40 PF01753 zf-MYND: MYND finger; 98.7 3.5E-09 7.5E-14 82.1 1.2 37 103-140 1-37 (37)
41 PF15499 Peptidase_C98: Ubiqui 98.7 8.3E-08 1.8E-12 102.7 9.7 134 594-763 118-253 (275)
42 KOG1710 MYND Zn-finger and ank 98.4 1.2E-07 2.6E-12 102.4 1.5 42 101-143 320-362 (396)
43 KOG3556 Familial cylindromatos 97.3 0.00014 3E-09 84.0 3.8 98 477-577 368-472 (724)
44 KOG1864 Ubiquitin-specific pro 96.6 0.0031 6.7E-08 76.8 6.8 99 480-578 34-151 (587)
45 KOG2061 Uncharacterized MYND Z 96.3 0.0021 4.5E-08 72.9 2.1 55 95-149 131-185 (362)
46 KOG3612 PHD Zn-finger protein 95.7 0.0027 5.8E-08 74.6 -0.4 42 101-145 528-569 (588)
47 KOG1887 Ubiquitin carboxyl-ter 92.7 0.029 6.3E-07 69.2 -0.4 162 596-772 593-772 (806)
48 PF08715 Viral_protease: Papai 92.3 0.88 1.9E-05 52.0 10.8 76 476-575 101-177 (320)
49 PF13824 zf-Mss51: Zinc-finger 91.5 0.2 4.3E-06 42.6 3.3 45 102-147 1-49 (55)
50 PLN03158 methionine aminopepti 90.2 0.21 4.6E-06 58.7 3.3 40 100-140 9-55 (396)
51 PF05408 Peptidase_C28: Foot-a 85.4 0.33 7.3E-06 50.6 0.8 53 726-790 129-181 (193)
52 PF04438 zf-HIT: HIT zinc fing 80.5 0.8 1.7E-05 34.3 1.0 28 101-129 3-30 (30)
53 KOG3362 Predicted BBOX Zn-fing 76.8 1.3 2.8E-05 44.5 1.4 33 100-133 118-150 (156)
54 KOG2857 Predicted MYND Zn-fing 63.3 2.7 5.8E-05 42.2 0.4 37 101-143 6-45 (157)
55 PF05408 Peptidase_C28: Foot-a 63.2 26 0.00057 37.0 7.5 24 475-498 31-54 (193)
56 KOG4317 Predicted Zn-finger pr 51.6 5.3 0.00011 45.0 0.2 35 101-141 8-43 (383)
57 PF09889 DUF2116: Uncharacteri 44.6 15 0.00033 31.9 1.9 32 100-138 3-34 (59)
58 PRK01343 zinc-binding protein; 40.0 26 0.00055 30.4 2.5 27 101-132 10-36 (57)
59 PF10013 DUF2256: Uncharacteri 36.6 11 0.00024 30.5 -0.1 29 101-129 9-40 (42)
60 COG3478 Predicted nucleic-acid 35.7 27 0.0006 30.8 2.1 35 657-691 3-39 (68)
61 PF14353 CpXC: CpXC protein 27.2 80 0.0017 31.1 4.1 49 611-670 2-50 (128)
62 KOG2858 Uncharacterized conser 26.2 24 0.00051 40.7 0.2 31 101-132 18-49 (390)
63 COG4338 Uncharacterized protei 23.7 9.4 0.0002 31.6 -2.5 28 101-128 13-43 (54)
64 PLN03144 Carbon catabolite rep 22.2 53 0.0012 41.1 2.2 38 102-140 61-109 (606)
65 PF09297 zf-NADH-PPase: NADH p 20.9 43 0.00094 25.2 0.7 22 101-122 4-32 (32)
66 KOG1871 Ubiquitin-specific pro 20.7 37 0.0008 39.8 0.4 33 475-507 176-208 (420)
No 1
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-71 Score=628.54 Aligned_cols=323 Identities=49% Similarity=0.892 Sum_probs=307.1
Q ss_pred CceeeecchhhhhhhhhhccCCCCCcccccCCCccchHHHHHHHhcCHHHHHHHHhcccCcccCCCcchHHHHHHHHHHH
Q 001772 453 KLKMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMM 532 (1015)
Q Consensus 453 ~~~~~~~~E~~~~l~~~~~~~~~~p~GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~~~~~~~~~~~l~~qL~kL~~~ 532 (1015)
..+.+|++|.+. +.++.+. ..+.||.|+|||||+|||||||.++|||.+||+...|...|....+|++|+|+.++..
T Consensus 87 p~k~Lfp~e~~~--~~~~~~~-~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~hi~~ 163 (545)
T KOG1865|consen 87 PAKVLFPYEKLP--LSSDRPA-AVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQAHITR 163 (545)
T ss_pred cchhccccceec--ccccccc-cCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHHHHHH
Confidence 347899999988 4444445 6789999999999999999999999999999999999999999999999999999987
Q ss_pred HHcCC-CCCChHHHHHHHHhhcccCCCCCcCcHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccccccccceEEEEEE
Q 001772 533 LRESA-GPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKV 611 (1015)
Q Consensus 533 L~ss~-~~IsP~~fl~~L~k~~~~F~~g~QQDA~EFL~~LLd~Le~e~l~~~~~~~~~~~~~~~~s~I~~lF~G~l~~~i 611 (1015)
..... .+|+|..|+..|+.|..+|..|+|+||||||+++||.|+..|+ ++....++..+++++|+++|+|.++++|
T Consensus 164 A~~~~g~pisP~~i~s~L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL---~g~~~~~~~sq~ttlv~~iFGG~LrS~v 240 (545)
T KOG1865|consen 164 ALHNPGHPISPSQILSNLRNISAHFGRGRQEDAHEFLRFTVDAMQKACL---PGHKQVDPRSQDTTLVHQIFGGYLRSQI 240 (545)
T ss_pred HhcCCCCccChHHHHHhhhhhcccccCCchhhHHHHHHHHHHHHHHhhc---CCCccCCcccccceehhhhhccchhhce
Confidence 66555 4999999999999999999999999999999999999999987 6677889999999999999999999999
Q ss_pred EecCCCCcccceeeeeeeeeccccccccHHHHHHhcCCCCcCCCCCccccccccccceeeeeeeeeccCceeEEEEEeee
Q 001772 612 KCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQ 691 (1015)
Q Consensus 612 ~C~~Cg~~s~~~E~f~~LsL~I~~~~~sLed~L~~f~~~E~Ldg~Nky~C~kC~~k~~A~K~~~I~~lP~iLiIqLkRF~ 691 (1015)
+|..|.+++.++|+.++|+|+|. +..+|++||++|++.|.|+|+|+|.|++|+++++|.|++.|.++|+||+||||||+
T Consensus 241 kC~~C~~vS~tyE~~~dltvei~-d~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF~ 319 (545)
T KOG1865|consen 241 KCLHCKGVSDTYEPYLDLTLEIQ-DASSLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRFS 319 (545)
T ss_pred ecccCCCcccccccccceEEEec-cchhHHHHHHHhhhHHhhCCccccccchhhhhCcccceeeeecCCceEEEeeehhc
Confidence 99999999999999999999999 68999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccceeEecCccCCCCCccCCCCCCCCceeEEEEEEEEcCCCCCCCCcEEEEEECCCCcEEEEeCCceeeeCCccc
Q 001772 692 EGRYGKINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQV 771 (1015)
Q Consensus 692 ~~~~~Ki~~~V~fPe~LDL~~y~~~~~~~~~~YeL~gVIvH~G~~~S~~sGHYVayVK~~dg~W~~FNDs~Vt~vs~eeV 771 (1015)
.+..+||++.|.||+.|||.|||.++.+.+..|.|+|||+|.|. +.++|||+||||..+|+||+|||+.|+.++++.|
T Consensus 320 ~~~~gKI~K~I~fPE~LDl~PyMS~~~e~s~~Y~LYavlVH~g~--~~~~GHY~cYvks~~g~Wy~~DDS~V~~~~~~~V 397 (545)
T KOG1865|consen 320 NGTGGKISKPVSFPETLDLQPYMSQPNEGSTVYKLYAVLVHLGT--SCHSGHYFCYVKSQNGQWYKMDDSEVTQSSIESV 397 (545)
T ss_pred cCcccccccccCCcccccccccccCCCCCCceEEEEEEEEeccc--cccCCceEEEEEcCCCceEEccCceeeeccccce
Confidence 99899999999999999999999988889999999999999998 7999999999999999999999999999999999
Q ss_pred cCCCcEEEEEEEc
Q 001772 772 MSEGAYMLFYMRS 784 (1015)
Q Consensus 772 ls~~AYILfYeR~ 784 (1015)
++++||||||.|.
T Consensus 398 Lsq~AYmLfY~R~ 410 (545)
T KOG1865|consen 398 LSQQAYILFYARK 410 (545)
T ss_pred ecccceEEEEEee
Confidence 9999999999998
No 2
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-57 Score=520.56 Aligned_cols=339 Identities=24% Similarity=0.335 Sum_probs=299.9
Q ss_pred CCCCceeeeccccccCcccccccccchhhhhHhhhcCceeeecchhhhhhhhhhccCCCCCcccccCCCccchHHHHHHH
Q 001772 417 QGSNVVSKMGIMKMMGLRKSTKLRQDSSELWHDQHRKLKMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCL 496 (1015)
Q Consensus 417 ~g~~hL~~~GI~k~~nl~~~~Kteks~~EL~~d~n~~~~~~~~~E~~~~l~~~~~~~~~~p~GL~NlGNTCYlNSVLQ~L 496 (1015)
....||+|||| |+.+|.|++|+++||++++|+.++|.+..|+...+.. .++ ++++||.|+||+||||||||+|
T Consensus 254 nl~~hl~hfGI----d~~~m~kteksl~elel~~N~i~Ew~~~~esg~~l~p--~~g-pgytGl~NlGNSCYlnSVmQ~L 326 (763)
T KOG0944|consen 254 NLESHLSHFGI----DMAKMDKTEKSLVELELDQNRIWEWEALEESGAPLEP--LFG-PGYTGLINLGNSCYLNSVMQSL 326 (763)
T ss_pred cHHHHHHhcCc----cHHHhccchhHHHHHHHHhhcccCceeeccCCCcccc--ccC-CCccceeecCcchhHHHHHHHh
Confidence 45789999999 9999999999999999999999999999998877643 678 9999999999999999999999
Q ss_pred hcCHHHHHHHHhc--ccCcccCCCcchHHHHHHHHHHHHHcC-----------CCCCChHHHHHHHHhhcccCCCCCcCc
Q 001772 497 TCTKPLVIYLLRR--SHSSACCGKDWCLMCELEQHVMMLRES-----------AGPLSPGRILSHMRSISCQIGDGSQED 563 (1015)
Q Consensus 497 ~sip~fr~~Ll~~--~~~~~~~~~~~~l~~qL~kL~~~L~ss-----------~~~IsP~~fl~~L~k~~~~F~~g~QQD 563 (1015)
+.+|.|...++.. .+...+..+..+|.|||.+|.+.|.++ +..|+|.+|+..+++.++.|++.+|||
T Consensus 327 f~i~~fq~~~~~~~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~qngIsP~mFK~~igknHpeFst~~QQD 406 (763)
T KOG0944|consen 327 FSIPSFQRRYLEQERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPLMDPSNQNGISPLMFKALIGKNHPEFSTNRQQD 406 (763)
T ss_pred eecccHHHhhccccceeecCCCCcchhHHHHHHHHHHHhhcCcccCccCCccccCCcCHHHHHHHHcCCCccccchhhhh
Confidence 9999999887654 344455678999999999999999752 368999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCcccceeeeeeeeecccc-----ccc
Q 001772 564 AHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYG-----WVE 638 (1015)
Q Consensus 564 A~EFL~~LLd~Le~e~l~~~~~~~~~~~~~~~~s~I~~lF~G~l~~~i~C~~Cg~~s~~~E~f~~LsL~I~~-----~~~ 638 (1015)
|+|||.+||+.|++..... ...+.++|.+.++.++.|..|++++++++..+.|+|+|+. ...
T Consensus 407 A~EFllfLl~ki~~n~rs~-------------~~nptd~frF~ve~Rv~C~~c~kVrYs~~~~~~i~lpv~~~~~v~~~v 473 (763)
T KOG0944|consen 407 AQEFLLFLLEKIRENSRSS-------------LPNPTDLFRFEVEDRVSCLGCRKVRYSYESEYLIQLPVPMTNEVREKV 473 (763)
T ss_pred HHHHHHHHHHHHhhccccc-------------CCCHHHHHHhhhhhhhhhhccccccccchhheeeEeeccccccccccC
Confidence 9999999999998632111 1347799999999999999999999999999999999984 235
Q ss_pred cHHHHHHhcCCCCcCCCCCccccccccccceeeeeeeeeccCceeEEEEEeeecccc--cccceeEecCccCCCCCccCC
Q 001772 639 SLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGRY--GKINKCITFPEMLDMMPFMTG 716 (1015)
Q Consensus 639 sLed~L~~f~~~E~Ldg~Nky~C~kC~~k~~A~K~~~I~~lP~iLiIqLkRF~~~~~--~Ki~~~V~fPe~LDL~~y~~~ 716 (1015)
++.+||+.|+.+.+.+ |+|..|+.+..|+|+.+|++||+||+||+.||.+..+ +|++..|++|++|||+.|+..
T Consensus 474 ~~~~cleaff~pq~~d----f~s~ac~~K~~a~kt~~~ksfP~yLiiqv~rf~~~dw~pkKld~~iempe~ldls~~rs~ 549 (763)
T KOG0944|consen 474 PISACLEAFFEPQVDD----FWSTACGEKKGATKTTRFKSFPDYLIIQVGRFTLQDWVPKKLDVSIEMPEELDLSSYRSK 549 (763)
T ss_pred CHHHHHHHhcCCcchh----hhhHhhcCccccccccccccCCceEEEEeeEEEecCceeeeeccceecchhhchhhhhhc
Confidence 9999999999994444 9999999999999999999999999999999987555 799999999999999877653
Q ss_pred CC------------------------------------------------------------------------------
Q 001772 717 TG------------------------------------------------------------------------------ 718 (1015)
Q Consensus 717 ~~------------------------------------------------------------------------------ 718 (1015)
+.
T Consensus 550 g~~p~ee~lpde~~~~~~~~~d~s~i~qL~~MGFp~eac~rAly~tgN~~aEaA~NWl~~HMdDpd~~~p~vvp~~~~~a 629 (763)
T KOG0944|consen 550 GLQPGEEALPDEAPETSEFAADRSVISQLVEMGFPEEACRRALYYTGNSGAEAASNWLMEHMDDPDIDDPFVVPGNSPKA 629 (763)
T ss_pred CCCCcccccCCcCcccCccchhHHHHHHHHHcCCCHHHHHHHHhhhcCccHHHHHHHHHHhccCcccCCceecCCCCCcc
Confidence 20
Q ss_pred ------------------------------------------------------------------------CCCCceeE
Q 001772 719 ------------------------------------------------------------------------DTPPLYML 726 (1015)
Q Consensus 719 ------------------------------------------------------------------------~~~~~YeL 726 (1015)
+++.+|+|
T Consensus 630 ~~~~~~e~~v~si~smGf~~~qa~~aL~~~n~nveravDWif~h~d~~~ed~~~~~s~~~~~~~~~~~~~~~dg~~~Y~L 709 (763)
T KOG0944|consen 630 DAREVDEESVASIVSMGFSRNQAIKALKATNNNVERAVDWIFSHMDIPVEDAAEGESSSAIESESTPSGTGKDGPGKYAL 709 (763)
T ss_pred ccCCCChhHheeeeeecCcHHHHHHHHHhcCccHHHHHHHHHhcccccccccCcCCCCCcchhhcCCcccCCCCCcceeE
Confidence 15679999
Q ss_pred EEEEEEEcCCCCCCCCcEEEEEECCCCcEEEEeCCceeeeCCccccCCCcEEEEEEEc
Q 001772 727 YSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQVMSEGAYMLFYMRS 784 (1015)
Q Consensus 727 ~gVIvH~G~~~S~~sGHYVayVK~~dg~W~~FNDs~Vt~vs~eeVls~~AYILfYeR~ 784 (1015)
+|||+|+|+ ++++||||||||+ .|+|++|||++|... ++..+..+|||||+|.
T Consensus 710 ~a~IsHmGt--s~~sGHYV~hirK-egkWVlfNDeKv~~S--~~ppK~lgYvY~y~R~ 762 (763)
T KOG0944|consen 710 FAFISHMGT--SAHSGHYVCHIRK-EGKWVLFNDEKVAAS--QEPPKDLGYVYLYTRI 762 (763)
T ss_pred EEEEecCCC--CCCCcceEEEEee-cCcEEEEcchhhhhc--cCChhhcceEEEEEec
Confidence 999999999 9999999999999 799999999999843 5666888999999996
No 3
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.1e-55 Score=484.51 Aligned_cols=303 Identities=52% Similarity=0.899 Sum_probs=270.9
Q ss_pred CcccccCCCccchHHHHHHHhcCHHHHHHHHhcccCcccCCCcchHHHHHHHHHHHHH-cCCCCCChHHHHHHHHhhccc
Q 001772 477 PRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLR-ESAGPLSPGRILSHMRSISCQ 555 (1015)
Q Consensus 477 p~GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~~~~~~~~~~~l~~qL~kL~~~L~-ss~~~IsP~~fl~~L~k~~~~ 555 (1015)
|+||.|+|||||||||||+|+++|+|+++++...+.........+++++|+.++..+. .....+.|..|...+..+.+.
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~ 80 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERALASSGPGSAPRIFSSNLKQISKH 80 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhccCCcchHHHHHHHHHHHHHhCCCCccChHHHHHHHHHHHHh
Confidence 6899999999999999999999999999998765555555567799999999998876 456789999999999999999
Q ss_pred CCCCCcCcHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCcccceeeeeeeeecccc
Q 001772 556 IGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYG 635 (1015)
Q Consensus 556 F~~g~QQDA~EFL~~LLd~Le~e~l~~~~~~~~~~~~~~~~s~I~~lF~G~l~~~i~C~~Cg~~s~~~E~f~~LsL~I~~ 635 (1015)
|..+.||||+|||.+||+.|++++.................++|.++|+|++.+.++|..|+..+.+.++|+.|+|+|++
T Consensus 81 f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~~~~l~l~i~~ 160 (304)
T cd02661 81 FRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQETTLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDIKG 160 (304)
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHhhhcccccccCccccCCChhhhcCCcEEeeeEEeCCCCCCcCccccceeeeeecCC
Confidence 99999999999999999999988655432221111223456789999999999999999999999999999999999997
Q ss_pred ccccHHHHHHhcCCCCcCCCCCccccccccccceeeeeeeeeccCceeEEEEEeeecccccccceeEecCccCCCCCccC
Q 001772 636 WVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGRYGKINKCITFPEMLDMMPFMT 715 (1015)
Q Consensus 636 ~~~sLed~L~~f~~~E~Ldg~Nky~C~kC~~k~~A~K~~~I~~lP~iLiIqLkRF~~~~~~Ki~~~V~fPe~LDL~~y~~ 715 (1015)
. .+|+++|+.|+.+|.++++++|.|++|+++..+.++..|.++|++|+|||+||..+...|+++.|.||+.|||.+|+.
T Consensus 161 ~-~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~iL~i~l~Rf~~~~~~Ki~~~v~f~~~L~l~~~~~ 239 (304)
T cd02661 161 A-DSLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNFRGGKINKQISFPETLDLSPYMS 239 (304)
T ss_pred C-CcHHHHHHHhcCceeeCCCCCeeCCCCCCccceEEEEEEecCCcEEEEEEeccccCCccccCCeEecCCeechhhccc
Confidence 4 799999999999999999999999999999999999999999999999999998776679999999999999999998
Q ss_pred CCCCCCCceeEEEEEEEEcCCCCCCCCcEEEEEECCCCcEEEEeCCceeeeCCccccCCCcEEEEEE
Q 001772 716 GTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQVMSEGAYMLFYM 782 (1015)
Q Consensus 716 ~~~~~~~~YeL~gVIvH~G~~~S~~sGHYVayVK~~dg~W~~FNDs~Vt~vs~eeVls~~AYILfYe 782 (1015)
........|+|+|||+|.|. ++++|||+||+|..+++||+|||+.|+++++++|+...||||||.
T Consensus 240 ~~~~~~~~Y~L~~vi~H~G~--~~~~GHY~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aYil~Y~ 304 (304)
T cd02661 240 QPNDGPLKYKLYAVLVHSGF--SPHSGHYYCYVKSSNGKWYNMDDSKVSPVSIETVLSQKAYILFYI 304 (304)
T ss_pred cCCCCCceeeEEEEEEECCC--CCCCcCCEEEEECCCCCEEEEeCCeeEECCHHHhcCCCcEEEEeC
Confidence 76667889999999999997 557999999999888999999999999999999999999999994
No 4
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.6e-55 Score=486.27 Aligned_cols=279 Identities=32% Similarity=0.558 Sum_probs=246.2
Q ss_pred ccccCCCccchHHHHHHHhcCHHHHHHHHhcccCcccCCCcchHHHHHHHHHHHHHcCC---CCCChHHHHHHHHhhccc
Q 001772 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESA---GPLSPGRILSHMRSISCQ 555 (1015)
Q Consensus 479 GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~~~~~~~~~~~l~~qL~kL~~~L~ss~---~~IsP~~fl~~L~k~~~~ 555 (1015)
||.|+|||||||||||+|++ .+++++|+.||..|+... ..++|..|+.+|+...+.
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~---------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~~~~~ 59 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF---------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKRENEL 59 (300)
T ss_pred CccCCCcceehhHHHHHhhh---------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhhcCC
Confidence 99999999999999999987 468899999999998643 458999999999999999
Q ss_pred CCCCCcCcHHHHHHHHHHHHHHHHHhhcCCCCC------CCCccccccccccccceEEEEEEEecCCCCcccceeeeeee
Q 001772 556 IGDGSQEDAHEFLRLLVASMQSICLERHGGESK------VDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDL 629 (1015)
Q Consensus 556 F~~g~QQDA~EFL~~LLd~Le~e~l~~~~~~~~------~~~~~~~~s~I~~lF~G~l~~~i~C~~Cg~~s~~~E~f~~L 629 (1015)
|..++||||+|||.+|||.|++++......... ........++|.++|+|++.+.++|..|++.+.+.|+|++|
T Consensus 60 f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~L 139 (300)
T cd02663 60 FDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANRKLNNNNNAEPQPTWVHEIFQGILTNETRCLTCETVSSRDETFLDL 139 (300)
T ss_pred CCCCccccHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCcCCCChhhhCceEEEeeEEeCCCCCCccccceeEEe
Confidence 999999999999999999999987543211100 00112345789999999999999999999999999999999
Q ss_pred eeccccccccHHHHHHhcCCCCcCCCCCccccccccccceeeeeeeeeccCceeEEEEEeeecc----cccccceeEecC
Q 001772 630 TLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEG----RYGKINKCITFP 705 (1015)
Q Consensus 630 sL~I~~~~~sLed~L~~f~~~E~Ldg~Nky~C~kC~~k~~A~K~~~I~~lP~iLiIqLkRF~~~----~~~Ki~~~V~fP 705 (1015)
+|+|+. ..+|++||+.|+.+|.++|+|+|.|++|+.++.+.|+..|.++|+||+|||+||.+. ...|++..|.||
T Consensus 140 sl~i~~-~~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp 218 (300)
T cd02663 140 SIDVEQ-NTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFP 218 (300)
T ss_pred ccCCCC-cCCHHHHHHHhhcccccCCCCcEECCCCCCceeEEEEEEeccCCceeEEEEEeEEeecccCCceecCceEecC
Confidence 999997 689999999999999999999999999999999999999999999999999999754 347999999999
Q ss_pred ccCCCCCccCCCCCCCCceeEEEEEEEEcCCCCCCCCcEEEEEECCCCcEEEEeCCceeeeCCcccc--------CCCcE
Q 001772 706 EMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQVM--------SEGAY 777 (1015)
Q Consensus 706 e~LDL~~y~~~~~~~~~~YeL~gVIvH~G~~~S~~sGHYVayVK~~dg~W~~FNDs~Vt~vs~eeVl--------s~~AY 777 (1015)
..|||..+..........|+|+|||+|.|. ++++|||+||+|. +++||+|||+.|+++++++|. ...||
T Consensus 219 ~~L~~~~~~~~~~~~~~~Y~L~~vi~H~G~--~~~~GHY~a~~k~-~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~~aY 295 (300)
T cd02663 219 LELRLFNTTDDAENPDRLYELVAVVVHIGG--GPNHGHYVSIVKS-HGGWLLFDDETVEKIDENAVEEFFGDSPNQATAY 295 (300)
T ss_pred cEEeccccccccCCCCeEEEEEEEEEEecC--CCCCCceEEEEEC-CCcEEEEcCCceEEcCHHHHHHhcCCCCCCCceE
Confidence 999998876555555689999999999997 5679999999999 999999999999999988885 46799
Q ss_pred EEEEE
Q 001772 778 MLFYM 782 (1015)
Q Consensus 778 ILfYe 782 (1015)
||||+
T Consensus 296 iLfY~ 300 (300)
T cd02663 296 VLFYQ 300 (300)
T ss_pred EEEeC
Confidence 99995
No 5
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=8.2e-55 Score=487.32 Aligned_cols=298 Identities=34% Similarity=0.598 Sum_probs=261.0
Q ss_pred cccccCCCccchHHHHHHHhcCHHHHHHHHhcccCc--ccCCCcchHHHHHHHHHHHHHcC--CCCCChHHHHHHHHhhc
Q 001772 478 RGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSS--ACCGKDWCLMCELEQHVMMLRES--AGPLSPGRILSHMRSIS 553 (1015)
Q Consensus 478 ~GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~~~--~~~~~~~~l~~qL~kL~~~L~ss--~~~IsP~~fl~~L~k~~ 553 (1015)
+||.|+|||||||||||+|+++|+|+++++...+.. ....+..++.++|.+||..|+.. ...+.|..|+..+....
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~~~ 80 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYSGDRSPYGPINLLYLSWKHS 80 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccccccCCccccHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhc
Confidence 599999999999999999999999999998875543 22345779999999999999543 45789999999999888
Q ss_pred ccCCCCCcCcHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCcccceeeeeeeeecc
Q 001772 554 CQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEI 633 (1015)
Q Consensus 554 ~~F~~g~QQDA~EFL~~LLd~Le~e~l~~~~~~~~~~~~~~~~s~I~~lF~G~l~~~i~C~~Cg~~s~~~E~f~~LsL~I 633 (1015)
+.|..+.||||+|||.+||+.|++++....... .......++|.++|+|.+...++|..|++.+.+.++|+.|+|+|
T Consensus 81 ~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~---~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i 157 (328)
T cd02660 81 RNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEA---NDESHCNCIIHQTFSGSLQSSVTCQRCGGVSTTVDPFLDLSLDI 157 (328)
T ss_pred hhhcccccccHHHHHHHHHHHHHHHhhcccccc---cccccCCceeEEecccEEEeeeEcCCCCCccceecccceeeeec
Confidence 899999999999999999999998765432210 11112356899999999999999999999999999999999999
Q ss_pred ccc--------------cccHHHHHHhcCCCCcCCCCCccccccccccceeeeeeeeeccCceeEEEEEeeeccc---cc
Q 001772 634 YGW--------------VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGR---YG 696 (1015)
Q Consensus 634 ~~~--------------~~sLed~L~~f~~~E~Ldg~Nky~C~kC~~k~~A~K~~~I~~lP~iLiIqLkRF~~~~---~~ 696 (1015)
+.. ..+|++||+.|+.+|.+++.+ |+|++|+.++.+.++..|.++|++|+|||+||.... ..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~~~~~-~~C~~C~~~~~~~~~~~i~~lP~~Lii~lkRf~~~~~~~~~ 236 (328)
T cd02660 158 PNKSTPSWALGESGVSGTPTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSLNKTSR 236 (328)
T ss_pred cccccccccccccCCCCCCCHHHHHHHhcCccccCCCC-ccCCCCCCccceEEEEEecCCCceeEEEEEeEEecCCCCCc
Confidence 864 279999999999999999877 999999999999999999999999999999998643 47
Q ss_pred ccceeEecCccCCCCCccCC---------CCCCCCceeEEEEEEEEcCCCCCCCCcEEEEEECCCCcEEEEeCCceeeeC
Q 001772 697 KINKCITFPEMLDMMPFMTG---------TGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVP 767 (1015)
Q Consensus 697 Ki~~~V~fPe~LDL~~y~~~---------~~~~~~~YeL~gVIvH~G~~~S~~sGHYVayVK~~dg~W~~FNDs~Vt~vs 767 (1015)
|++..|.||.+|||.+|+.. .......|+|+|||+|.|. ..+|||+||+|..+++||+|||+.|++++
T Consensus 237 K~~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~---~~~GHY~~~~~~~~~~W~~~nD~~V~~~~ 313 (328)
T cd02660 237 KIDTYVQFPLELNMTPYTSSSIGDTQDSNSLDPDYTYDLFAVVVHKGT---LDTGHYTAYCRQGDGQWFKFDDAMITRVS 313 (328)
T ss_pred CCCcEEeCCCEechhhhcccccccccccccCCCCceEEEEEEEEeecc---CCCCcEEEEEECCCCcEEEEECCeeEECC
Confidence 99999999999999999874 2345679999999999996 34899999999977999999999999999
Q ss_pred CccccCCCcEEEEEE
Q 001772 768 MSQVMSEGAYMLFYM 782 (1015)
Q Consensus 768 ~eeVls~~AYILfYe 782 (1015)
+++|+...||||||.
T Consensus 314 ~~~v~~~~ayil~Y~ 328 (328)
T cd02660 314 EEEVLKSQAYLLFYH 328 (328)
T ss_pred HHHhcCCCcEEEEeC
Confidence 999999999999994
No 6
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.4e-54 Score=486.62 Aligned_cols=288 Identities=26% Similarity=0.502 Sum_probs=250.3
Q ss_pred ccccCCCccchHHHHHHHhcCHHHHHHHHhcccCccc---------CCCcchHHHHHHHHHHHHHcC-CCCCChHHHHHH
Q 001772 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC---------CGKDWCLMCELEQHVMMLRES-AGPLSPGRILSH 548 (1015)
Q Consensus 479 GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~~~~~---------~~~~~~l~~qL~kL~~~L~ss-~~~IsP~~fl~~ 548 (1015)
||.|+||||||||+||+|+++|+|+++++........ .....+++++|++||.+|+.+ ...++|..|+..
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f~~~ 80 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFVKA 80 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCCceEChHHHHHH
Confidence 8999999999999999999999999999875432210 012368999999999999864 457999999988
Q ss_pred HHhhcccCCCCCcCcHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCcccceeeeee
Q 001772 549 MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMD 628 (1015)
Q Consensus 549 L~k~~~~F~~g~QQDA~EFL~~LLd~Le~e~l~~~~~~~~~~~~~~~~s~I~~lF~G~l~~~i~C~~Cg~~s~~~E~f~~ 628 (1015)
+ .|..++||||+|||.+||+.|++++..... ....++|.++|.|++...++|..|+..+.+.++|+.
T Consensus 81 l-----~~~~~~QqDa~EFl~~lLd~L~~~l~~~~~--------~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~ 147 (324)
T cd02668 81 L-----GLDTGQQQDAQEFSKLFLSLLEAKLSKSKN--------PDLKNIVQDLFRGEYSYVTQCSKCGRESSLPSKFYE 147 (324)
T ss_pred h-----CCCCccccCHHHHHHHHHHHHHHHHhhccC--------CcccchhhhhcceEEEEEEEeCCCCCccccccccEE
Confidence 8 467889999999999999999987643210 123468999999999999999999999999999999
Q ss_pred eeeccccccccHHHHHHhcCCCCcCCCCCccccccccccceeeeeeeeeccCceeEEEEEeeecc----cccccceeEec
Q 001772 629 LTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEG----RYGKINKCITF 704 (1015)
Q Consensus 629 LsL~I~~~~~sLed~L~~f~~~E~Ldg~Nky~C~kC~~k~~A~K~~~I~~lP~iLiIqLkRF~~~----~~~Ki~~~V~f 704 (1015)
|+|+|++ ..+|+++|+.|+.+|.++|+|+|.|++|+.++.+.|+..|.++|+||+|||+||.++ ...|++..|.|
T Consensus 148 l~l~i~~-~~sl~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~f 226 (324)
T cd02668 148 LELQLKG-HKTLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISF 226 (324)
T ss_pred EEEEecc-cCCHHHHHHHhhCceecCCCccccCCCCCceeeeEEEEEecCCCCeEEEEEEcceeecccCcceeCCcEEEC
Confidence 9999986 579999999999999999999999999999999999999999999999999999754 34799999999
Q ss_pred CccCCCCCccCCCCCCCCceeEEEEEEEEcCCCCCCCCcEEEEEECC-CCcEEEEeCCceeeeCCccc------------
Q 001772 705 PEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM-QGTWFRIDDTQVHPVPMSQV------------ 771 (1015)
Q Consensus 705 Pe~LDL~~y~~~~~~~~~~YeL~gVIvH~G~~~S~~sGHYVayVK~~-dg~W~~FNDs~Vt~vs~eeV------------ 771 (1015)
|+.|||.+|+.........|+|+|||+|.|. ++++|||+||+|.. +++||+|||+.|++++.+.+
T Consensus 227 p~~Ldl~~~~~~~~~~~~~Y~L~~vI~H~G~--~~~~GHY~~~~k~~~~~~W~~fdD~~V~~i~~~~~~~~~~~~~~~~~ 304 (324)
T cd02668 227 PEILDMGEYLAESDEGSYVYELSGVLIHQGV--SAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKLGNSEDPAKPR 304 (324)
T ss_pred CCeEechhhcccccCCCcEEEEEEEEEEcCC--CCCCEeeEEEEECCCCCcEEEEECCceEEcCHHHhhccccccccccc
Confidence 9999999999776667789999999999997 66799999999985 48999999999999976644
Q ss_pred ---------cCCCcEEEEEE
Q 001772 772 ---------MSEGAYMLFYM 782 (1015)
Q Consensus 772 ---------ls~~AYILfYe 782 (1015)
.+..||||||+
T Consensus 305 ~~~~~~~~~~~~~~y~l~y~ 324 (324)
T cd02668 305 KSEIKKGTHSSRTAYMLVYK 324 (324)
T ss_pred ccccCCCccccCceEEEEeC
Confidence 23579999995
No 7
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.5e-54 Score=484.21 Aligned_cols=274 Identities=34% Similarity=0.566 Sum_probs=239.7
Q ss_pred ccccCCCccchHHHHHHHhcCHHHHHHHHhcccCcccCCCcchHHHHHHHHHHHHHcC-CCCCChHH-HHHHHHhhcccC
Q 001772 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRES-AGPLSPGR-ILSHMRSISCQI 556 (1015)
Q Consensus 479 GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~~~~~~~~~~~l~~qL~kL~~~L~ss-~~~IsP~~-fl~~L~k~~~~F 556 (1015)
||.|+||||||||+||+|+++|+|+++++...... ......++++|+.||..|... ...+.|.. |+..+. .+.|
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~--~~~~~~~~~~L~~lf~~l~~~~~~~~~~~~~~l~~~~--~~~f 76 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPR--LGDSQSVMKKLQLLQAHLMHTQRRAEAPPDYFLEASR--PPWF 76 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCccc--cCCcchHHHHHHHHHHHHhhcCCcccCCHHHHHHHhc--cccc
Confidence 89999999999999999999999999998865432 123456889999999988754 45666765 665543 4678
Q ss_pred CCCCcCcHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCcccceeeeeeeeeccccc
Q 001772 557 GDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGW 636 (1015)
Q Consensus 557 ~~g~QQDA~EFL~~LLd~Le~e~l~~~~~~~~~~~~~~~~s~I~~lF~G~l~~~i~C~~Cg~~s~~~E~f~~LsL~I~~~ 636 (1015)
..++||||+|||.+||+.|+ ++|.++|+|++.+.++|..|+.++.+.|+|..|+|+|+
T Consensus 77 ~~~~QqDa~EFl~~lLd~l~--------------------~~i~~~F~G~~~~~i~C~~C~~~s~~~e~f~~l~L~i~-- 134 (327)
T cd02664 77 TPGSQQDCSEYLRYLLDRLH--------------------TLIEKMFGGKLSTTIRCLNCNSTSARTERFRDLDLSFP-- 134 (327)
T ss_pred CCCCcCCHHHHHHHHHHHHH--------------------HHHHhhCcEEeEeEEEcCCCCCEecccccceeeecCCC--
Confidence 99999999999999999997 25789999999999999999999999999999999997
Q ss_pred cccHHHHHHhcCCCCcCCCCCccccccccccceeeeeeeeeccCceeEEEEEeeecc----cccccceeEecCccCCCCC
Q 001772 637 VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEG----RYGKINKCITFPEMLDMMP 712 (1015)
Q Consensus 637 ~~sLed~L~~f~~~E~Ldg~Nky~C~kC~~k~~A~K~~~I~~lP~iLiIqLkRF~~~----~~~Ki~~~V~fPe~LDL~~ 712 (1015)
+|+++|+.|+.+|.++|+|+|+|++|++++.+.|+..|.++|+||+|||+||.++ ...|+++.|.||..|||..
T Consensus 135 --sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~ldl~~ 212 (327)
T cd02664 135 --SVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINEVLSLPV 212 (327)
T ss_pred --CHHHHHHHhcCeeEccCCCceeCCccCCccceeEEEEcccCChhhEEEeeeeEEccccCcceecCceEecCCEEecCc
Confidence 8999999999999999999999999999999999999999999999999999753 2379999999999999998
Q ss_pred ccCC-------------------CCCCCCceeEEEEEEEEcCCCCCCCCcEEEEEECCC---------------------
Q 001772 713 FMTG-------------------TGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQ--------------------- 752 (1015)
Q Consensus 713 y~~~-------------------~~~~~~~YeL~gVIvH~G~~~S~~sGHYVayVK~~d--------------------- 752 (1015)
++.. .......|+|+|||+|.|. ++++|||+||+|...
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~Vi~H~G~--~~~~GHY~a~~r~~~~~~~~~~~~~~~~~~~~~~~~ 290 (327)
T cd02664 213 RVESKSSESPLEKKEEESGDDGELVTRQVHYRLYAVVVHSGY--SSESGHYFTYARDQTDADSTGQECPEPKDAEENDES 290 (327)
T ss_pred cccccccccccccccccccccccccCCCceEEEEEEEEEccC--CCCCcceEEEEecCCccccccccccccccccccCCC
Confidence 8631 1124578999999999997 567999999999854
Q ss_pred CcEEEEeCCceeeeCCccccC-------CCcEEEEEE
Q 001772 753 GTWFRIDDTQVHPVPMSQVMS-------EGAYMLFYM 782 (1015)
Q Consensus 753 g~W~~FNDs~Vt~vs~eeVls-------~~AYILfYe 782 (1015)
++||+|||+.|+.++.++|.+ ..||||||+
T Consensus 291 ~~W~~fnD~~V~~~~~~~v~~~~~~~~~~~aYlLfY~ 327 (327)
T cd02664 291 KNWYLFNDSRVTFSSFESVQNVTSRFPKDTPYILFYE 327 (327)
T ss_pred CCEEEEeCCceEECCHHHHHHhhCCCCCCCEEEEEeC
Confidence 789999999999999999876 789999995
No 8
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9.1e-54 Score=481.68 Aligned_cols=272 Identities=29% Similarity=0.519 Sum_probs=234.2
Q ss_pred CCCcccccCCCccchHHHHHHHhcCHHHHHHHHhcccCcccCCCcchHHHHHHHHHHHH---H-cCCCCCChHHHHHHHH
Q 001772 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMML---R-ESAGPLSPGRILSHMR 550 (1015)
Q Consensus 475 ~~p~GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~~~~~~~~~~~l~~qL~kL~~~L---~-ss~~~IsP~~fl~~L~ 550 (1015)
.+++||.|+|||||||||||+|+++|+|++++....... ....+++.++..| . .....+.|..|+..++
T Consensus 22 ~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~-------~~~~~~q~~~~~l~~~~~~~~~~~~P~~~~~~l~ 94 (332)
T cd02671 22 LPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLI-------SSVEQLQSSFLLNPEKYNDELANQAPRRLLNALR 94 (332)
T ss_pred CCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhccc-------CcHHHHHHHHHHHHHHHhhcccccCHHHHHHHHH
Confidence 788999999999999999999999999999886543111 1122333333322 2 2334567999999999
Q ss_pred hhcccCCCCCcCcHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCcccceeeeeeee
Q 001772 551 SISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLT 630 (1015)
Q Consensus 551 k~~~~F~~g~QQDA~EFL~~LLd~Le~e~l~~~~~~~~~~~~~~~~s~I~~lF~G~l~~~i~C~~Cg~~s~~~E~f~~Ls 630 (1015)
..++.|..+.||||+|||..||+.|+. +|.++|+|.+..+++|..|++.+.+.|+|++|+
T Consensus 95 ~~~~~f~~~~QQDA~EFl~~LLd~L~~--------------------~i~~~F~g~~~~~~~C~~C~~~s~~~E~f~~ls 154 (332)
T cd02671 95 EVNPMYEGYLQHDAQEVLQCILGNIQE--------------------LVEKDFQGQLVLRTRCLECETFTERREDFQDIS 154 (332)
T ss_pred HhccccCCccccCHHHHHHHHHHHHHH--------------------HHHhhhceEEEEEEEeCCCCCeeceecccEEEE
Confidence 999999999999999999999999974 467899999999999999999999999999999
Q ss_pred eccccc------------------cccHHHHHHhcCCCCcCCCCCccccccccccceeeeeeeeeccCceeEEEEEeeec
Q 001772 631 LEIYGW------------------VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQE 692 (1015)
Q Consensus 631 L~I~~~------------------~~sLed~L~~f~~~E~Ldg~Nky~C~kC~~k~~A~K~~~I~~lP~iLiIqLkRF~~ 692 (1015)
|+|++. ..+|++||+.|+.+|.++|+|+|.|++|+.++.|+|+..|.++|+||+|||+||..
T Consensus 155 L~i~~~~~~~~~~~~~~~~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~~C~~~~~a~k~~~~~~~P~vL~i~LkRF~~ 234 (332)
T cd02671 155 VPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEVITIHLKCFAA 234 (332)
T ss_pred EEeCCCcccccccccccccccccccCCHHHHHHHhCCcceecCCCCeeCCCCCCceeEEEEEEEecCCCEEEEEeeeecc
Confidence 999864 25899999999999999999999999999999999999999999999999999984
Q ss_pred --------ccccccceeEecCccCCCCCccCCCCCCCCceeEEEEEEEEcCCCCCCCCcEEEEEECCCCcEEEEeCCcee
Q 001772 693 --------GRYGKINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVH 764 (1015)
Q Consensus 693 --------~~~~Ki~~~V~fPe~LDL~~y~~~~~~~~~~YeL~gVIvH~G~~~S~~sGHYVayVK~~dg~W~~FNDs~Vt 764 (1015)
+...|++..|.||..|||.++... .....|+|+|||+|.|. +.++|||+|||| ||+|||+.|+
T Consensus 235 ~~~~~~~~~~~~Ki~~~v~fp~~L~~~~~~~~--~~~~~Y~L~~VI~H~G~--~~~~GHY~a~vr-----W~~fdD~~V~ 305 (332)
T cd02671 235 NGSEFDCYGGLSKVNTPLLTPLKLSLEEWSTK--PKNDVYRLFAVVMHSGA--TISSGHYTAYVR-----WLLFDDSEVK 305 (332)
T ss_pred ccccccccCCceecCccccCccccccccccCC--CCCCeEEEEEEEEEcCC--CCCCCeEEEEEE-----EEEEcCcceE
Confidence 245799999999999999877543 34579999999999996 567999999999 9999999999
Q ss_pred eeCCccccC---------CCcEEEEEE
Q 001772 765 PVPMSQVMS---------EGAYMLFYM 782 (1015)
Q Consensus 765 ~vs~eeVls---------~~AYILfYe 782 (1015)
.++++++.. ..||||||+
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~aYiLfY~ 332 (332)
T cd02671 306 VTEEKDFLEALSPNTSSTSTPYLLFYK 332 (332)
T ss_pred EccHHHHHhhcCCCCCCCCceEEEEEC
Confidence 998766642 579999995
No 9
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2e-53 Score=467.88 Aligned_cols=246 Identities=40% Similarity=0.684 Sum_probs=225.6
Q ss_pred ccccCCCccchHHHHHHHhcCHHHHHHHHhcccCcccCCCcchHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhcccCCC
Q 001772 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGD 558 (1015)
Q Consensus 479 GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~~~~~~~~~~~l~~qL~kL~~~L~ss~~~IsP~~fl~~L~k~~~~F~~ 558 (1015)
||.|+|||||||||||+|+++|+|+++++. +|..|+..+...++.|..
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~--------------------------------~P~~~~~~l~~~~~~f~~ 48 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE--------------------------------TPKELFSQVCRKAPQFKG 48 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH--------------------------------CHHHHHHHHHHhhHhhcC
Confidence 999999999999999999999999999875 778888888888899999
Q ss_pred CCcCcHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCcccceeeeeeeeecccc---
Q 001772 559 GSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYG--- 635 (1015)
Q Consensus 559 g~QQDA~EFL~~LLd~Le~e~l~~~~~~~~~~~~~~~~s~I~~lF~G~l~~~i~C~~Cg~~s~~~E~f~~LsL~I~~--- 635 (1015)
++||||+|||.+||+.|+ ++|.++|.|++.+.++|..|+..+.+.|+|+.|+|+++.
T Consensus 49 ~~QqDA~Efl~~lld~l~--------------------~~i~~~F~G~~~~~i~C~~C~~~s~~~E~f~~L~Lp~~~~~~ 108 (279)
T cd02667 49 YQQQDSHELLRYLLDGLR--------------------TFIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDEIK 108 (279)
T ss_pred CchhhHHHHHHHHHHHHH--------------------HhhhhhcceEEEEEEEcCCCCCEeCccccceEEecCCCcccC
Confidence 999999999999999997 257899999999999999999999999999999999863
Q ss_pred ccccHHHHHHhcCCCCcCCCCCccccccccccceeeeeeeeeccCceeEEEEEeeecc---cccccceeEecCccCCCCC
Q 001772 636 WVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEG---RYGKINKCITFPEMLDMMP 712 (1015)
Q Consensus 636 ~~~sLed~L~~f~~~E~Ldg~Nky~C~kC~~k~~A~K~~~I~~lP~iLiIqLkRF~~~---~~~Ki~~~V~fPe~LDL~~ 712 (1015)
...+|++||+.|+.+|.++|+|+|.|++|++ |.|+..|.++|++|+|||+||..+ ...|++..|.||+.|||.+
T Consensus 109 ~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~---a~k~~~i~~~P~~Lii~LkRF~~~~~~~~~Ki~~~v~fP~~Ldl~~ 185 (279)
T cd02667 109 SECSIESCLKQFTEVEILEGNNKFACENCTK---AKKQYLISKLPPVLVIHLKRFQQPRSANLRKVSRHVSFPEILDLAP 185 (279)
T ss_pred CCCCHHHHHHhhcCeeEecCCCcccCCccCc---eeeEeEhhhCCCeEEEEEeccccCcccCceecCceEeCCCccchhh
Confidence 2468999999999999999999999999987 889999999999999999999865 3479999999999999999
Q ss_pred ccCCC-----CCCCCceeEEEEEEEEcCCCCCCCCcEEEEEECC----------------------CCcEEEEeCCceee
Q 001772 713 FMTGT-----GDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM----------------------QGTWFRIDDTQVHP 765 (1015)
Q Consensus 713 y~~~~-----~~~~~~YeL~gVIvH~G~~~S~~sGHYVayVK~~----------------------dg~W~~FNDs~Vt~ 765 (1015)
|+... ......|+|+|||+|.|. . ++|||+||||.. +++||+|||+.|++
T Consensus 186 ~~~~~~~~~~~~~~~~Y~L~~vi~H~G~--~-~~GHY~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~dD~~V~~ 262 (279)
T cd02667 186 FCDPKCNSSEDKSSVLYRLYGVVEHSGT--M-RSGHYVAYVKVRPPQQRLSDLTKSKPAADEAGPGSGQWYYISDSDVRE 262 (279)
T ss_pred ccCccccccccCCCceEEEEEEEEEeCC--C-CCCEeEEEEEcCccccccccccccccccccCCCCCCcEEEEECCccEE
Confidence 98752 235679999999999996 3 699999999974 57999999999999
Q ss_pred eCCccccCCCcEEEEEE
Q 001772 766 VPMSQVMSEGAYMLFYM 782 (1015)
Q Consensus 766 vs~eeVls~~AYILfYe 782 (1015)
++.++|....||||||+
T Consensus 263 v~~~~v~~~~aYiLfYe 279 (279)
T cd02667 263 VSLEEVLKSEAYLLFYE 279 (279)
T ss_pred CCHHHhccCCcEEEEeC
Confidence 99999999999999995
No 10
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.1e-53 Score=467.46 Aligned_cols=283 Identities=27% Similarity=0.361 Sum_probs=247.9
Q ss_pred ccccCCCccchHHHHHHHhcCHHHHHHHHhcccCcc-cCCCcchHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhcccCC
Q 001772 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSA-CCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIG 557 (1015)
Q Consensus 479 GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~~~~-~~~~~~~l~~qL~kL~~~L~ss~~~IsP~~fl~~L~k~~~~F~ 557 (1015)
||.|+|||||||||||+|+++|+|+++++....... ......+++++|++|+..|+.....++|..|+..+++..+.|.
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~i~p~~~~~~l~~~~~~f~ 80 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKKQEPVPPIEFLQLLRMAFPQFA 80 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhCCCcCCcHHHHHHHHHHCcCcc
Confidence 899999999999999999999999999987654321 2234678999999999999988889999999999999888884
Q ss_pred ------CCCcCcHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccccccccceEEEEEEEecCCC-Ccccceeeeeeee
Q 001772 558 ------DGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCS-HESERYENIMDLT 630 (1015)
Q Consensus 558 ------~g~QQDA~EFL~~LLd~Le~e~l~~~~~~~~~~~~~~~~s~I~~lF~G~l~~~i~C~~Cg-~~s~~~E~f~~Ls 630 (1015)
.++||||+|||..||+.|++++.. .....++|.++|+|.+...++|..|+ ..+.+.|+|+.|+
T Consensus 81 ~~~~~~~~~QqDA~EFl~~lld~L~~~~~~----------~~~~~~~i~~~F~g~~~~~~~C~~C~~~~~~~~e~f~~Ls 150 (305)
T cd02657 81 EKQNQGGYAQQDAEECWSQLLSVLSQKLPG----------AGSKGSFIDQLFGIELETKMKCTESPDEEEVSTESEYKLQ 150 (305)
T ss_pred cccCCCCccccCHHHHHHHHHHHHHHHhcc----------cCCCCcHHHHhhceEEEEEEEcCCCCCCCccccccceEEE
Confidence 459999999999999999987532 01234679999999999999999999 7899999999999
Q ss_pred eccccc--cccHHHHHHhcCCCCcCCCCCccccccccccceeeeeeeeeccCceeEEEEEeeecc----cccccceeEec
Q 001772 631 LEIYGW--VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEG----RYGKINKCITF 704 (1015)
Q Consensus 631 L~I~~~--~~sLed~L~~f~~~E~Ldg~Nky~C~kC~~k~~A~K~~~I~~lP~iLiIqLkRF~~~----~~~Ki~~~V~f 704 (1015)
|+|+.. ..+|+++|+.++..+.. ..|+.|+....+.|+..|.++|++|+|||+||.++ ...|++..|.|
T Consensus 151 l~i~~~~~~~~l~~~L~~~~~~~~~-----~~~~~~~~~~~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~f 225 (305)
T cd02657 151 CHISITTEVNYLQDGLKKGLEEEIE-----KHSPTLGRDAIYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKF 225 (305)
T ss_pred eecCCCcccccHHHHHHHhhhhhhh-----hcCcccCCCceEEEEEEeccCCcEEEEEEECCccccccCceeecCcEEEC
Confidence 999875 46899999999986654 46889999889999999999999999999999753 34699999999
Q ss_pred CccCCCCCccCCCCCCCCceeEEEEEEEEcCCCCCCCCcEEEEEECCC-CcEEEEeCCceeeeCCccccC-------CCc
Q 001772 705 PEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQ-GTWFRIDDTQVHPVPMSQVMS-------EGA 776 (1015)
Q Consensus 705 Pe~LDL~~y~~~~~~~~~~YeL~gVIvH~G~~~S~~sGHYVayVK~~d-g~W~~FNDs~Vt~vs~eeVls-------~~A 776 (1015)
|.+|||.+|+. .+.+|+|+|||+|.|. ++.+|||+||+|..+ ++||+|||+.|+++++++|.. ..|
T Consensus 226 P~~Ldl~~~~~----~~~~Y~L~~vI~H~G~--~~~~GHY~~~~~~~~~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~a 299 (305)
T cd02657 226 PFELDLYELCT----PSGYYELVAVITHQGR--SADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDILKLSGGGDWHIA 299 (305)
T ss_pred CceEecccccC----CCCcEEEEEEEEecCC--CCCCcEEEEEEEcCCCCeEEEEECCceEEeCHHHHHhhcCCCCCceE
Confidence 99999999987 4578999999999997 667999999999965 899999999999999999874 579
Q ss_pred EEEEEE
Q 001772 777 YMLFYM 782 (1015)
Q Consensus 777 YILfYe 782 (1015)
|||||+
T Consensus 300 YiL~Y~ 305 (305)
T cd02657 300 YILLYK 305 (305)
T ss_pred EEEEEC
Confidence 999996
No 11
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.5e-52 Score=466.47 Aligned_cols=275 Identities=27% Similarity=0.354 Sum_probs=240.7
Q ss_pred ccccCCCccchHHHHHHHhcCHHHHHHHHhcccC--cccCCCcchHHHHHHHHHHHHHcC---------------CCCCC
Q 001772 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHS--SACCGKDWCLMCELEQHVMMLRES---------------AGPLS 541 (1015)
Q Consensus 479 GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~~--~~~~~~~~~l~~qL~kL~~~L~ss---------------~~~Is 541 (1015)
||.|+|||||||||||+|+++|+|+++|+...+. .....+..++.++|++|+..|+.. ..++.
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~i~ 80 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVGIK 80 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCCCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccccC
Confidence 9999999999999999999999999999763322 222345678999999999998752 34689
Q ss_pred hHHHHHHHHhhcccCCCCCcCcHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCccc
Q 001772 542 PGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESE 621 (1015)
Q Consensus 542 P~~fl~~L~k~~~~F~~g~QQDA~EFL~~LLd~Le~e~l~~~~~~~~~~~~~~~~s~I~~lF~G~l~~~i~C~~Cg~~s~ 621 (1015)
|..|+..++..++.|..++||||+|||++||+.|++++... ....+.++|+|.+...++|..|+.++.
T Consensus 81 p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~------------~~~~~~~~f~~~~~~~i~C~~C~~~s~ 148 (311)
T cd02658 81 PSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFKN------------LGLNPNDLFKFMIEDRLECLSCKKVKY 148 (311)
T ss_pred cHHHHHHHhccChhhcccccccHHHHHHHHHHHHHHhhccc------------ccCCchhheEEEeeEEEEcCCCCCEEE
Confidence 99999999999999999999999999999999999865321 123477999999999999999999999
Q ss_pred ceeeeeeeeeccccc-------------cccHHHHHHhcCCCCcCCCCCccccccccccceeeeeeeeeccCceeEEEEE
Q 001772 622 RYENIMDLTLEIYGW-------------VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLK 688 (1015)
Q Consensus 622 ~~E~f~~LsL~I~~~-------------~~sLed~L~~f~~~E~Ldg~Nky~C~kC~~k~~A~K~~~I~~lP~iLiIqLk 688 (1015)
+.++|..|+|+++.. ..+|+++|+.|+..|.++ ++|++|+.++.+.|+.+|.++|++|+|||+
T Consensus 149 ~~e~~~~lsL~l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i~----~~C~~C~~~~~a~k~~~i~~lP~vLii~Lk 224 (311)
T cd02658 149 TSELSEILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIE----DFCSTCKEKTTATKTTGFKTFPDYLVINMK 224 (311)
T ss_pred eecceeEEeeecccccccccccccccCCCCCHHHHHHHHcCccccc----ccccCCCCcccEEEEEEeecCCceEEEEeE
Confidence 999999999998753 248999999999999998 689999999999999999999999999999
Q ss_pred eeecc---cccccceeEecCccCCCCCccCCCCCCCCceeEEEEEEEEcCCCCCCCCcEEEEEECC---CCcEEEEeCCc
Q 001772 689 RFQEG---RYGKINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM---QGTWFRIDDTQ 762 (1015)
Q Consensus 689 RF~~~---~~~Ki~~~V~fPe~LDL~~y~~~~~~~~~~YeL~gVIvH~G~~~S~~sGHYVayVK~~---dg~W~~FNDs~ 762 (1015)
||... ...|++..|.||..| ....|+|+|||+|.|. +.++|||+||+|.. +++||+|||+.
T Consensus 225 RF~~~~~~~~~Ki~~~v~~p~~l-----------~~~~Y~L~~vI~H~G~--~~~~GHY~~~vk~~~~~~~~W~~fnD~~ 291 (311)
T cd02658 225 RFQLLENWVPKKLDVPIDVPEEL-----------GPGKYELIAFISHKGT--SVHSGHYVAHIKKEIDGEGKWVLFNDEK 291 (311)
T ss_pred EEEecCCCceEeeccccccCCcC-----------CCCcEEEEEEEEccCC--CCCCcceEEEEeCCCCCCCCEEEecCce
Confidence 99863 236999999999877 2467999999999997 56799999999985 28999999999
Q ss_pred eeeeCCccccCCCcEEEEEE
Q 001772 763 VHPVPMSQVMSEGAYMLFYM 782 (1015)
Q Consensus 763 Vt~vs~eeVls~~AYILfYe 782 (1015)
|++++..+|+...||||||+
T Consensus 292 V~~~~~~~~~~~~~YilfY~ 311 (311)
T cd02658 292 VVASQDPPEMKKLGYIYFYQ 311 (311)
T ss_pred eEECCcccccCCcceEEEEC
Confidence 99999999999999999996
No 12
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9.8e-52 Score=463.61 Aligned_cols=294 Identities=32% Similarity=0.515 Sum_probs=249.1
Q ss_pred CCcccccCCCccchHHHHHHHhcCHHHHHHHHhcccCcccCCCcchHHHHHHHHHHHHHcCCC-CCChHHHHHHHHh-hc
Q 001772 476 SPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAG-PLSPGRILSHMRS-IS 553 (1015)
Q Consensus 476 ~p~GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~~~~~~~~~~~l~~qL~kL~~~L~ss~~-~IsP~~fl~~L~k-~~ 553 (1015)
|++||.|+||||||||+||+|+++|+|+++++..... .......++.++|+.||..|..... .+.|..+. .+.. ..
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~-~~~~~~~~~~~~l~~lf~~~~~~~~~~~~~~~~~-~~~~~~~ 78 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPT-EDDDDNKSVPLALQRLFLFLQLSESPVKTTELTD-KTRSFGW 78 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCc-ccCcccccHHHHHHHHHHHHHhCCccccCcchhh-eeccCCC
Confidence 5799999999999999999999999999999885322 1134567799999999999986543 34444443 2222 23
Q ss_pred ccCCCCCcCcHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCcccceeeeeeeeecc
Q 001772 554 CQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEI 633 (1015)
Q Consensus 554 ~~F~~g~QQDA~EFL~~LLd~Le~e~l~~~~~~~~~~~~~~~~s~I~~lF~G~l~~~i~C~~Cg~~s~~~E~f~~LsL~I 633 (1015)
..|..++||||+|||.+||+.|++++... ...++|.++|+|.+...++|..|+..+...++|+.|+|++
T Consensus 79 ~~~~~~~QqDa~Efl~~ll~~l~~~~~~~-----------~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i 147 (334)
T cd02659 79 DSLNTFEQHDVQEFFRVLFDKLEEKLKGT-----------GQEGLIKNLFGGKLVNYIICKECPHESEREEYFLDLQVAV 147 (334)
T ss_pred CCCCcccchhHHHHHHHHHHHHHHHhccC-----------cccchhhhhCceEEEeEEEecCCCceecccccceEEEEEc
Confidence 56788999999999999999999865321 1235789999999999999999999999999999999999
Q ss_pred ccccccHHHHHHhcCCCCcCCCCCccccccccccceeeeeeeeeccCceeEEEEEeeecc----cccccceeEecCccCC
Q 001772 634 YGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEG----RYGKINKCITFPEMLD 709 (1015)
Q Consensus 634 ~~~~~sLed~L~~f~~~E~Ldg~Nky~C~kC~~k~~A~K~~~I~~lP~iLiIqLkRF~~~----~~~Ki~~~V~fPe~LD 709 (1015)
++ ..+|+++|+.|+.+|.++|.|.|.|++|++++.+.++..|.++|++|+|||+||..+ ...|++..|.||..||
T Consensus 148 ~~-~~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~fp~~Ld 226 (334)
T cd02659 148 KG-KKNLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFPLELD 226 (334)
T ss_pred CC-CCCHHHHHHHhcCeeEecCCccEecCcCCCcccEEEEEEeecCCCEEEEEeeeeEEccccCcceeCCceEeCCceec
Confidence 86 579999999999999999999999999999999999999999999999999999753 3479999999999999
Q ss_pred CCCccCCC-----------CCCCCceeEEEEEEEEcCCCCCCCCcEEEEEECC-CCcEEEEeCCceeeeCCccccC----
Q 001772 710 MMPFMTGT-----------GDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM-QGTWFRIDDTQVHPVPMSQVMS---- 773 (1015)
Q Consensus 710 L~~y~~~~-----------~~~~~~YeL~gVIvH~G~~~S~~sGHYVayVK~~-dg~W~~FNDs~Vt~vs~eeVls---- 773 (1015)
|.+|+... ......|+|+|||+|.|+ .++|||+||||.. +++||+|||+.|+++++++|+.
T Consensus 227 l~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~vI~H~G~---~~~GHY~~~vk~~~~~~W~~~nD~~V~~i~~~~v~~~~~g 303 (334)
T cd02659 227 MEPYTEKGLAKKEGDSEKKDSESYIYELHGVLVHSGD---AHGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAEEECFG 303 (334)
T ss_pred CccccccccccccccccccCCCCeeEEEEEEEEecCC---CCCCCeEEEEECCCCCceEEEeCcccEECCHHHHHHHcCC
Confidence 99998653 234678999999999995 4589999999984 6899999999999999888852
Q ss_pred ------------------CCcEEEEEEEcCC
Q 001772 774 ------------------EGAYMLFYMRSCP 786 (1015)
Q Consensus 774 ------------------~~AYILfYeR~~~ 786 (1015)
..||||||+|++|
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~ay~l~Y~~~~~ 334 (334)
T cd02659 304 GEETQKTYDSGPRAFKRTTNAYMLFYERKSP 334 (334)
T ss_pred CccccccccccccccccccceEEEEEEEeCC
Confidence 3599999999865
No 13
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.8e-50 Score=466.16 Aligned_cols=285 Identities=21% Similarity=0.297 Sum_probs=239.8
Q ss_pred CCCcccccCCCccchHHHHHHHhcCHHHHHHHHhcccCcccCCCcchHHHHHHHHHHHHHcC---CCCCChHHHHHHHHh
Q 001772 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRES---AGPLSPGRILSHMRS 551 (1015)
Q Consensus 475 ~~p~GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~~~~~~~~~~~l~~qL~kL~~~L~ss---~~~IsP~~fl~~L~k 551 (1015)
+|++||.|+|||||||||||+|+++|+||++++...+.........++.++|..++..+++. ...++|..|+..+..
T Consensus 117 ~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~fl~~l~~ 196 (440)
T cd02669 117 PGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENIKDRKSELVKRLSELIRKIWNPRNFKGHVSPHELLQAVSK 196 (440)
T ss_pred CCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccccccCCCcHHHHHHHHHHHHHhccccCCCccCHHHHHHHHHh
Confidence 78999999999999999999999999999999976554322234568999999999999865 468999999999987
Q ss_pred hc-ccCCCCCcCcHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccccccccceEEEEEEEecCCC-------------
Q 001772 552 IS-CQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCS------------- 617 (1015)
Q Consensus 552 ~~-~~F~~g~QQDA~EFL~~LLd~Le~e~l~~~~~~~~~~~~~~~~s~I~~lF~G~l~~~i~C~~Cg------------- 617 (1015)
.. +.|..++||||+|||.+||+.|++++... .....++|.++|+|++...++|..|.
T Consensus 197 ~~~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~---------~~~~~~ii~~~F~G~l~~~~~c~~~~~~~~~~~~~~~~c 267 (440)
T cd02669 197 VSKKKFSITEQSDPVEFLSWLLNTLHKDLGGS---------KKPNSSIIHDCFQGKVQIETQKIKPHAEEEGSKDKFFKD 267 (440)
T ss_pred hcccccCCcccCCHHHHHHHHHHHHHHHhccC---------CCCCCCcceeccCceEEEEEEeecccccccccccccccc
Confidence 64 67899999999999999999999875321 12346789999999999999987654
Q ss_pred -C-cccceeeeeeeeecccccc-------------ccHHHHHHhcCCCCcCCCCCccccccccccceeeeeeeeeccCce
Q 001772 618 -H-ESERYENIMDLTLEIYGWV-------------ESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNI 682 (1015)
Q Consensus 618 -~-~s~~~E~f~~LsL~I~~~~-------------~sLed~L~~f~~~E~Ldg~Nky~C~kC~~k~~A~K~~~I~~lP~i 682 (1015)
. .+.+.++|++|+|+|+... .+|+++|+ +|.|+.|.....+.|++.|.++|+|
T Consensus 268 ~~~~s~~~~pF~~LsLdip~~~~~~~~~~~~~l~~~~l~e~L~------------ky~~~~c~~~~~a~k~~~I~~LP~v 335 (440)
T cd02669 268 SRVKKTSVSPFLLLTLDLPPPPLFKDGNEENIIPQVPLKQLLK------------KYDGKTETELKDSLKRYLISRLPKY 335 (440)
T ss_pred cccceeeeccceEEEecCCCCccccccccccccCcccHHHHHH------------hcCCccceecccceEEEEEeeCCcE
Confidence 2 4667899999999998631 35555554 2677788888889999999999999
Q ss_pred eEEEEEeeeccc--ccccceeEecCcc-CCCCCccCCC---CCCCCceeEEEEEEEEcCCCCCCCCcEEEEEECC-CCcE
Q 001772 683 LTIVLKRFQEGR--YGKINKCITFPEM-LDMMPFMTGT---GDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM-QGTW 755 (1015)
Q Consensus 683 LiIqLkRF~~~~--~~Ki~~~V~fPe~-LDL~~y~~~~---~~~~~~YeL~gVIvH~G~~~S~~sGHYVayVK~~-dg~W 755 (1015)
|+||||||.... ..|+...|.||.. |||.+|+... ......|+|+|||+|.|. .+++|||+||||+. +|+|
T Consensus 336 LiihLKRF~~~~~~~~K~~t~V~FP~~~LDm~~y~~~~~~~~~~~~~Y~L~avI~H~G~--~~~sGHY~a~v~~~~~~~W 413 (440)
T cd02669 336 LIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDYVHFDKPSLNLSTKYNLVANIVHEGT--PQEDGTWRVQLRHKSTNKW 413 (440)
T ss_pred EEEEEecccCCCCccccCCCEEECCCCccchhhhhCccccccCCCceEEEEEEEEEecc--CCCCeeEEEEEEcCCCCeE
Confidence 999999998543 4799999999986 8999998632 245689999999999997 33699999999974 7899
Q ss_pred EEEeCCceeeeCCccccCCCcEEEEEE
Q 001772 756 FRIDDTQVHPVPMSQVMSEGAYMLFYM 782 (1015)
Q Consensus 756 ~~FNDs~Vt~vs~eeVls~~AYILfYe 782 (1015)
|+|||+.|+++++++|+...||||||+
T Consensus 414 ~~fdD~~V~~v~~~~v~~~eaYll~Y~ 440 (440)
T cd02669 414 FEIQDLNVKEVLPQLIFLSESYIQIWE 440 (440)
T ss_pred EEEECCeeeEcCHHHhccCCceEEEeC
Confidence 999999999999999999999999996
No 14
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-48 Score=440.18 Aligned_cols=308 Identities=27% Similarity=0.472 Sum_probs=267.6
Q ss_pred CCCcccccCCCccchHHHHHHHhcCHHHHHHHHhcccCcccC-----CCcchHHHHHHHHHHHHHcC-CCCCChHHHHHH
Q 001772 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACC-----GKDWCLMCELEQHVMMLRES-AGPLSPGRILSH 548 (1015)
Q Consensus 475 ~~p~GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~~~~~~-----~~~~~l~~qL~kL~~~L~ss-~~~IsP~~fl~~ 548 (1015)
.|.+||.|+||||||||.||||.|++.+++|++...+....+ .-...+...+..|+.++... ...+.|..|+..
T Consensus 263 ~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~~haf~Ps~fK~t 342 (823)
T COG5560 263 AGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKT 342 (823)
T ss_pred ccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCccccccChHHHHHH
Confidence 467899999999999999999999999999998876654433 23566788888888888754 457999999999
Q ss_pred HHhhcccCCCCCcCcHHHHHHHHHHHHHHHHHhhcCCCCCCCC---------------------ccccccccccccceEE
Q 001772 549 MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDP---------------------RLQETTFIQHTFGGRL 607 (1015)
Q Consensus 549 L~k~~~~F~~g~QQDA~EFL~~LLd~Le~e~l~~~~~~~~~~~---------------------~~~~~s~I~~lF~G~l 607 (1015)
|+.++..|.++.|||.+||+.+|||.||+.+..-........| ..++.++|.++|.|.+
T Consensus 343 IG~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiItdLFqgmy 422 (823)
T COG5560 343 IGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQGMY 422 (823)
T ss_pred HhhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Confidence 9999999999999999999999999999987643322211111 1346789999999999
Q ss_pred EEEEEecCCCCcccceeeeeeeeecccc----------------------------------------------------
Q 001772 608 WSKVKCLRCSHESERYENIMDLTLEIYG---------------------------------------------------- 635 (1015)
Q Consensus 608 ~~~i~C~~Cg~~s~~~E~f~~LsL~I~~---------------------------------------------------- 635 (1015)
.+.+.|..|+.++.+++||++|+||+|-
T Consensus 423 KSTL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~pl~iel~~sSt~~~lk~lv~~~~gk~gc~ei~v~ 502 (823)
T COG5560 423 KSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKIELDASSTIRGLKKLVDAEYGKLGCFEIKVM 502 (823)
T ss_pred hceeeccCcCceeeeecchhhccccCchhhcccccEEEECCCCCCCceEEEEeccchHHHHHHHHHHHhccCCccceeEE
Confidence 9999999999999999999999999861
Q ss_pred --------------------------------------------------------------------------------
Q 001772 636 -------------------------------------------------------------------------------- 635 (1015)
Q Consensus 636 -------------------------------------------------------------------------------- 635 (1015)
T Consensus 503 ~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe~~~ngi~vpvvh~~~~~gYks~rlFg~pflqlnv~~~~~i~~kLvkE~ 582 (823)
T COG5560 503 CIYYGGNYNMLEPADKVLLQDIPQTDFVYLYETNDNGIEVPVVHLRIEKGYKSKRLFGDPFLQLNVLIKASIYDKLVKEF 582 (823)
T ss_pred EEEeccchhhcchhhHHHHhhcCccceEEEeecCCCCeEEEEEeccccccccchhhhCCcceEEEeecchhhHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 001772 636 -------------------------------------------------------------------------------- 635 (1015)
Q Consensus 636 -------------------------------------------------------------------------------- 635 (1015)
T Consensus 583 ~ell~~v~~k~tdvd~~~~q~~l~r~es~p~~wl~l~teid~kree~veeE~~~n~nd~vvi~cew~ek~y~~lFsy~~l 662 (823)
T COG5560 583 EELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLETEIDTKREEQVEEEGQMNFNDAVVISCEWEEKRYLSLFSYDPL 662 (823)
T ss_pred HHHHHHHhhcchhhhhhhhhccchhcccCcchhhhhhhhccchhhhhhhhhhccCCCcceEEeeeccccchhhhhcCCcc
Confidence
Q ss_pred ----------ccccHHHHHHhcCCCCcCCCCCccccccccccceeeeeeeeeccCceeEEEEEeeeccc--ccccceeEe
Q 001772 636 ----------WVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGR--YGKINKCIT 703 (1015)
Q Consensus 636 ----------~~~sLed~L~~f~~~E~Ldg~Nky~C~kC~~k~~A~K~~~I~~lP~iLiIqLkRF~~~~--~~Ki~~~V~ 703 (1015)
...+|++||..|.++|.+.-...|+|+.|+....|.|++.|+++|.||+||||||+... ..||++-|+
T Consensus 663 w~~~ei~~~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss~rsfrdKiddlVe 742 (823)
T COG5560 663 WTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVE 742 (823)
T ss_pred chhHHhhhccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheeeehhhhhhcccchhhhhhhhc
Confidence 01289999999999999998899999999999999999999999999999999998543 369999999
Q ss_pred cC-ccCCCCCccCCCCCCCCceeEEEEEEEEcCCCCCCCCcEEEEEECC-CCcEEEEeCCceeeeCCccccCCCcEEEEE
Q 001772 704 FP-EMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM-QGTWFRIDDTQVHPVPMSQVMSEGAYMLFY 781 (1015)
Q Consensus 704 fP-e~LDL~~y~~~~~~~~~~YeL~gVIvH~G~~~S~~sGHYVayVK~~-dg~W~~FNDs~Vt~vs~eeVls~~AYILfY 781 (1015)
|| +.|||+.+...-.+..-.|+|+||=.|+|.++ +|||+||+|+. +++||+|||++|+++.+++.....||+|||
T Consensus 743 yPiddldLs~~~~~~~~p~liydlyavDNHyggls---gGHYtAyarn~~n~~wy~fdDsritevdped~vtssaYvLFy 819 (823)
T COG5560 743 YPIDDLDLSGVEYMVDDPRLIYDLYAVDNHYGGLS---GGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFY 819 (823)
T ss_pred cccccccccceEEeecCcceEEEeeeccccccccC---CcceeeeeecccCCceEEecCccccccCccccccceeEEEEE
Confidence 99 79999988765555558999999999999766 89999999996 569999999999999999999999999999
Q ss_pred EEcC
Q 001772 782 MRSC 785 (1015)
Q Consensus 782 eR~~ 785 (1015)
+|+.
T Consensus 820 rrk~ 823 (823)
T COG5560 820 RRKS 823 (823)
T ss_pred EecC
Confidence 9974
No 15
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-46 Score=399.83 Aligned_cols=308 Identities=26% Similarity=0.413 Sum_probs=237.2
Q ss_pred CCCCCcccccCCCccchHHHHHHHhcCHHHHHHHHh-----cccCcccC-CCcchHHHHHHHHHHHHH-cCCCCCChHHH
Q 001772 473 DLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLR-----RSHSSACC-GKDWCLMCELEQHVMMLR-ESAGPLSPGRI 545 (1015)
Q Consensus 473 ~~~~p~GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~-----~~~~~~~~-~~~~~l~~qL~kL~~~L~-ss~~~IsP~~f 545 (1015)
.+..|.||.|+|||||||++||||+++..+...|+. ........ .+......++..|...+. .+...|+|..|
T Consensus 67 dn~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg~~sis~~nF 146 (415)
T COG5533 67 DNLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHGPKSISPRNF 146 (415)
T ss_pred cccCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCCCcccchHHH
Confidence 346789999999999999999999999999885433 22222222 233355566666655543 46678999999
Q ss_pred HHHHHhhcccCCCCCcCcHHHHHHHHHHHHHHHHHhhcCCCC--CC-C---------------------Ccccccccccc
Q 001772 546 LSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGES--KV-D---------------------PRLQETTFIQH 601 (1015)
Q Consensus 546 l~~L~k~~~~F~~g~QQDA~EFL~~LLd~Le~e~l~~~~~~~--~~-~---------------------~~~~~~s~I~~ 601 (1015)
+..++.+++.|+...|||+|||+.++||.||+++........ .+ + ....+.++|.+
T Consensus 147 ~~i~~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~sn~S~v~~ 226 (415)
T COG5533 147 IDILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRSNKSLVAK 226 (415)
T ss_pred HHHHccccccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhccchHHHHH
Confidence 999999999999999999999999999999987633211100 00 0 00234578899
Q ss_pred ccceEEEEEEEecCCCCcccceeeeeeeeeccccc-cccHHHHHHhcCCCCcCCCCCccccccccccceeeeeeeeeccC
Q 001772 602 TFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGW-VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAP 680 (1015)
Q Consensus 602 lF~G~l~~~i~C~~Cg~~s~~~E~f~~LsL~I~~~-~~sLed~L~~f~~~E~Ldg~Nky~C~kC~~k~~A~K~~~I~~lP 680 (1015)
.|.|+..++++|..|+++++++.+|..|.+|++.- ...|+|||+.|.+.|.++|++.|.|++|++++.++|++.|.++|
T Consensus 227 ~f~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v~~~~l~eC~~~f~~~e~L~g~d~W~CpkC~~k~ss~K~~~I~~lP 306 (415)
T COG5533 227 TFFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEVVQLGLQECIDRFYEEEKLEGKDAWRCPKCGRKESSRKRMEILVLP 306 (415)
T ss_pred HHhhhhhhhhhhhhcCCceeEEeccceeeeccchheeecHHHHHHHhhhHHhhcCcccccCchhcccccchheEEEEecC
Confidence 99999999999999999999999999999999853 24699999999999999999999999999999999999999999
Q ss_pred ceeEEEEEeeecc--cccccceeEe----cCccCCC-CCccCCCCCCCCceeEEEEEEEEcCCCCCCCCcEEEEEECCCC
Q 001772 681 NILTIVLKRFQEG--RYGKINKCIT----FPEMLDM-MPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQG 753 (1015)
Q Consensus 681 ~iLiIqLkRF~~~--~~~Ki~~~V~----fPe~LDL-~~y~~~~~~~~~~YeL~gVIvH~G~~~S~~sGHYVayVK~~dg 753 (1015)
++|||||+||... ..+||+..-- +|-+... ..|-.+.+-.+.+|.|+|||||.|+++ +|||+++|+. ++
T Consensus 307 ~~LII~i~RF~i~V~~~~kiD~p~gw~~~~~~e~~v~~~f~~~~~~~P~~Y~L~gv~Ch~G~L~---gGHY~s~v~~-~~ 382 (415)
T COG5533 307 DVLIIHISRFHISVMGRKKIDTPQGWKNTASVEVNVTLLFNNGIGYIPRKYSLLGVVCHNGTLN---GGHYFSEVKR-SG 382 (415)
T ss_pred ceEEEEeeeeeEEeecccccCCCcchhccCCceecccccccCCCCCCccceeEEEEEeecceec---CceeEEeeee-cC
Confidence 9999999999621 1223332211 1111111 111123334567999999999999766 8999999998 79
Q ss_pred cEEEEeCCceeeeCCccc-cCCCcEEEEEEEc
Q 001772 754 TWFRIDDTQVHPVPMSQV-MSEGAYMLFYMRS 784 (1015)
Q Consensus 754 ~W~~FNDs~Vt~vs~eeV-ls~~AYILfYeR~ 784 (1015)
.|+.|||+.|++++...- ....+|||||+|.
T Consensus 383 ~W~~~dDs~vr~~~~~t~~~~pSsYilFY~r~ 414 (415)
T COG5533 383 TWNVYDDSQVRKGSRTTSGSHPSSYILFYTRS 414 (415)
T ss_pred ceEEechhheeeccceecccCCcceEEEEEec
Confidence 999999999999864332 2346999999996
No 16
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.5e-46 Score=405.10 Aligned_cols=210 Identities=41% Similarity=0.679 Sum_probs=190.1
Q ss_pred ccccCCCccchHHHHHHHhcCHHHHHHHHhcccCcccCCCcchHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhcccCCC
Q 001772 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGD 558 (1015)
Q Consensus 479 GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~~~~~~~~~~~l~~qL~kL~~~L~ss~~~IsP~~fl~~L~k~~~~F~~ 558 (1015)
||.|+||||||||+||+|+++|+|++++....
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~------------------------------------------------ 32 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL------------------------------------------------ 32 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH------------------------------------------------
Confidence 89999999999999999999999999886511
Q ss_pred CCcCcHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCccc-ceeeeeeeeeccccc-
Q 001772 559 GSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESE-RYENIMDLTLEIYGW- 636 (1015)
Q Consensus 559 g~QQDA~EFL~~LLd~Le~e~l~~~~~~~~~~~~~~~~s~I~~lF~G~l~~~i~C~~Cg~~s~-~~E~f~~LsL~I~~~- 636 (1015)
+||||+|||..||+.|+. .+.++|.|.+.+.++|..|+..+. +.|+|++|+|+|+..
T Consensus 33 -~QqDa~EFl~~ll~~l~~--------------------~i~~~F~g~~~~~i~C~~C~~~s~~~~e~f~~LsL~ip~~~ 91 (240)
T cd02662 33 -EQQDAHELFQVLLETLEQ--------------------LLKFPFDGLLASRIVCLQCGESSKVRYESFTMLSLPVPNQS 91 (240)
T ss_pred -hhcCHHHHHHHHHHHHHH--------------------hccCccccEEEEEEEeCCCCCccCcceeeeeeeEecccccC
Confidence 899999999999999973 367899999999999999999866 599999999999975
Q ss_pred ---cccHHHHHHhcCCCCcCCCCCccccccccccceeeeeeeeeccCceeEEEEEeeeccc---ccccceeEecCccCCC
Q 001772 637 ---VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGR---YGKINKCITFPEMLDM 710 (1015)
Q Consensus 637 ---~~sLed~L~~f~~~E~Ldg~Nky~C~kC~~k~~A~K~~~I~~lP~iLiIqLkRF~~~~---~~Ki~~~V~fPe~LDL 710 (1015)
..+|++||+.|+.+|.++| |.|++| +..|.++|++|+|||+||..+. ..|++..|.||+.|
T Consensus 92 ~~~~~sl~~~L~~~~~~E~l~~---~~C~~C--------~~~i~~lP~vLii~LkRF~~~~~~~~~K~~~~v~fp~~l-- 158 (240)
T cd02662 92 SGSGTTLEHCLDDFLSTEIIDD---YKCDRC--------QTVIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPERL-- 158 (240)
T ss_pred CCCCCCHHHHHHHhcCcccccC---cCCCCC--------eEEeecCCcEEEEEEEEEEEcCCCceeeeccEEECCCcc--
Confidence 4699999999999999998 999999 5679999999999999997543 47999999999988
Q ss_pred CCccCCCCCCCCceeEEEEEEEEcCCCCCCCCcEEEEEECC---------------------CCcEEEEeCCceeeeCCc
Q 001772 711 MPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM---------------------QGTWFRIDDTQVHPVPMS 769 (1015)
Q Consensus 711 ~~y~~~~~~~~~~YeL~gVIvH~G~~~S~~sGHYVayVK~~---------------------dg~W~~FNDs~Vt~vs~e 769 (1015)
....|+|+|||+|.|.. ++|||+||+|.. .++||+|||+.|++++++
T Consensus 159 ---------~~~~Y~L~avi~H~G~~---~~GHY~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~ 226 (240)
T cd02662 159 ---------PKVLYRLRAVVVHYGSH---SSGHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHPWWRISDTTVKEVSES 226 (240)
T ss_pred ---------CCceEEEEEEEEEeccC---CCceEEEEEeCCCcccccccccccccccccCccCCCEEEEechheEEeCHH
Confidence 35789999999999963 699999999985 389999999999999999
Q ss_pred cc-cCCCcEEEEEE
Q 001772 770 QV-MSEGAYMLFYM 782 (1015)
Q Consensus 770 eV-ls~~AYILfYe 782 (1015)
+| ....||||||+
T Consensus 227 ~v~~~~~aY~LfYe 240 (240)
T cd02662 227 EVLEQKSAYMLFYE 240 (240)
T ss_pred HHhhCCCEEEEEeC
Confidence 99 88899999995
No 17
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-45 Score=405.31 Aligned_cols=375 Identities=21% Similarity=0.317 Sum_probs=301.4
Q ss_pred CCCCcccccCcCccccccccccchhhhcCCCCCchhhhhhccccCCCCCCCceeeeccccccCcccccccccchhhhhHh
Q 001772 370 NPMGTKNCKSAKSCTKVVGDQSCLEKERKGPIADESKAARVRDTIPAQGSNVVSKMGIMKMMGLRKSTKLRQDSSELWHD 449 (1015)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~hL~~~GI~k~~nl~~~~Kteks~~EL~~d 449 (1015)
||..-|+....+.+-.+- =|.|+..-+..+. .+...|+.-||| |+.+..++||++++|+.+
T Consensus 218 Hplavkl~Sls~~~~diy-CY~CD~e~R~~~n--------------~n~~s~~~~fGi----nIa~~~~~Eksl~~lq~e 278 (749)
T COG5207 218 HPLAVKLPSLSKEDCDIY-CYLCDSEIRSRYN--------------SNENSVTIDFGI----NIADGKTEEKSLRKLQSE 278 (749)
T ss_pred CceEEEccccccccccEE-EEecCcccccCCc--------------ccccceeeeecc----chhhccchHHHHHHHHHh
Confidence 777777777767665442 2223322222211 234678889999 999999999999999999
Q ss_pred hhcCceeeecchhhhhhhhhhccCCCCCcccccCCCccchHHHHHHHhcCHHHHHHH--HhcccCcccCCCcchHHHHHH
Q 001772 450 QHRKLKMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYL--LRRSHSSACCGKDWCLMCELE 527 (1015)
Q Consensus 450 ~n~~~~~~~~~E~~~~l~~~~~~~~~~p~GL~NlGNTCYlNSVLQ~L~sip~fr~~L--l~~~~~~~~~~~~~~l~~qL~ 527 (1015)
+|.+|+|....+..... +..+...++||.|+||+||+|||||.|+....+..-+ +...+...+..+..+|.|||.
T Consensus 279 qn~nw~F~~~~~~~~sk---~~~~ps~~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P~~~l~CQl~ 355 (749)
T COG5207 279 QNANWEFLEKKRAPESK---GESVPSPYVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPLECLFCQLM 355 (749)
T ss_pred hhcCcchhccccCchhh---cccCCCCccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecCCchhHHHHHH
Confidence 99999988665533221 1223123799999999999999999999987766544 444455566778999999999
Q ss_pred HHHHHHHcC-----CCCCChHHHHHHHHhhcccCCCCCcCcHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccccccc
Q 001772 528 QHVMMLRES-----AGPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHT 602 (1015)
Q Consensus 528 kL~~~L~ss-----~~~IsP~~fl~~L~k~~~~F~~g~QQDA~EFL~~LLd~Le~e~l~~~~~~~~~~~~~~~~s~I~~l 602 (1015)
+|+..|... ...|.|.+|+..++..++.|+..+||||+|||.+||+.|.+-... -..+.|.++
T Consensus 356 kll~~mk~~p~~~y~ngi~p~~fk~~igq~h~eFg~~~QQDA~EFLlfLL~kirk~~~S------------~~~~~It~l 423 (749)
T COG5207 356 KLLSKMKETPDNEYVNGISPLDFKMLIGQDHPEFGKFAQQDAHEFLLFLLEKIRKGERS------------YLIPPITSL 423 (749)
T ss_pred HHHhhccCCCCccccCCcChhhHHHHHcCCchhhhhhhhhhHHHHHHHHHHHHhhccch------------hcCCCcchh
Confidence 999998753 467999999999999999999999999999999999999763211 123468899
Q ss_pred cceEEEEEEEecCCCCcccceeeeeeeeecccc--ccccHHHHHHhcCCCCcCCCCCccccccccccceeeeeeeeeccC
Q 001772 603 FGGRLWSKVKCLRCSHESERYENIMDLTLEIYG--WVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAP 680 (1015)
Q Consensus 603 F~G~l~~~i~C~~Cg~~s~~~E~f~~LsL~I~~--~~~sLed~L~~f~~~E~Ldg~Nky~C~kC~~k~~A~K~~~I~~lP 680 (1015)
|.+.++.++.|..|+.+++.+++...+.+++.+ ...++.++|+.|+.+++++ |.|.+|+.+..|.++..|++||
T Consensus 424 f~Fe~e~rlsC~~C~~v~ySye~~~~i~i~le~n~E~~di~~~v~a~f~pdtiE----~~CenCk~K~~a~~k~~~kslP 499 (749)
T COG5207 424 FEFEVERRLSCSGCMDVSYSYESMLMICIFLEGNDEPQDIRKSVEAFFLPDTIE----WSCENCKGKKKASRKPFIKSLP 499 (749)
T ss_pred hhhhhcceecccccccccccccceEEEEeecccCcchhhHHHHHHheECcccee----eehhhhcCcccccccchhhccC
Confidence 999999999999999999999999999888764 3568999999999999999 9999999999999999999999
Q ss_pred ceeEEEEEeeecccc--cccceeEecC--ccCCCCCccCCCC--------------------------------------
Q 001772 681 NILTIVLKRFQEGRY--GKINKCITFP--EMLDMMPFMTGTG-------------------------------------- 718 (1015)
Q Consensus 681 ~iLiIqLkRF~~~~~--~Ki~~~V~fP--e~LDL~~y~~~~~-------------------------------------- 718 (1015)
++||+|..||...++ .|+..++.+. ..++++.||....
T Consensus 500 k~LIlq~~R~~lqny~v~kls~pi~~~~D~m~~~~s~msk~~PqtEn~LPdedE~~t~Nqs~I~qL~~mGfp~~~~~rAL 579 (749)
T COG5207 500 KYLILQVGRYSLQNYKVEKLSDPIEMRSDDMIKLGSFMSKFDPQTENLLPDEDEAFTDNQSLIRQLVDMGFPEEDAARAL 579 (749)
T ss_pred ceeEEecceeeccceeehhccCceEEccccccchhhHhhccCCcccccCCccccccCchHHHHHHHHHcCCCHHHHHHHH
Confidence 999999999986655 5777777665 4677776654200
Q ss_pred --------------------------------------------------------------------------------
Q 001772 719 -------------------------------------------------------------------------------- 718 (1015)
Q Consensus 719 -------------------------------------------------------------------------------- 718 (1015)
T Consensus 580 ~~tgNqDaEsAMNWLFqHMdDPdlndP~~~~~~vPKkDkeVdE~~~~Slle~Gln~n~~Rkal~~~n~d~~r~V~w~~N~ 659 (749)
T COG5207 580 GITGNQDAESAMNWLFQHMDDPDLNDPFVPPPNVPKKDKEVDESKARSLLENGLNPNLCRKALMDMNTDSKRRVVWCIND 659 (749)
T ss_pred hhccCcchHHHHHHHHhhccCcccCCCCCCCCCCCcccccccHHHHHHHHHcCCCHHHHHHHHHHccCCchheEEEEEeC
Confidence
Q ss_pred -----------------------CCCCceeEEEEEEEEcCCCCCCCCcEEEEEECC---CCcEEEEeCCceeeeCCcccc
Q 001772 719 -----------------------DTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM---QGTWFRIDDTQVHPVPMSQVM 772 (1015)
Q Consensus 719 -----------------------~~~~~YeL~gVIvH~G~~~S~~sGHYVayVK~~---dg~W~~FNDs~Vt~vs~eeVl 772 (1015)
.....|.|.|||+|.|. ++|+||||+|||+. .-+|++|||++|..++.-+++
T Consensus 660 ~D~tF~EP~v~~eeqqqk~~~~~STa~PYaLtAvI~HkG~--s~haGHYv~fIrk~~~~K~kWvl~nDek~v~~~svE~~ 737 (749)
T COG5207 660 DDGTFPEPEVPNEEQQQKKDLGYSTAKPYALTAVICHKGD--SIHAGHYVWFIRKNGKDKWKWVLKNDEKTVLNSSVEVL 737 (749)
T ss_pred CCCCCCCCCCCchhhhhcccccccccCcccceeEEeccCC--cccccceEEEEecccCcceeEEEEccchheehhhHHHH
Confidence 01235999999999998 99999999999973 237999999999988877888
Q ss_pred CCCcEEEEEEEc
Q 001772 773 SEGAYMLFYMRS 784 (1015)
Q Consensus 773 s~~AYILfYeR~ 784 (1015)
+.++|||||+|.
T Consensus 738 k~nGYiylf~R~ 749 (749)
T COG5207 738 KDNGYIYLFKRC 749 (749)
T ss_pred hhCCeEEEEecC
Confidence 999999999984
No 18
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.4e-44 Score=381.22 Aligned_cols=220 Identities=40% Similarity=0.730 Sum_probs=200.9
Q ss_pred ccccCCCccchHHHHHHHhcCHHHHHHHHhcccCcccCCCcchHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhcccCCC
Q 001772 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGD 558 (1015)
Q Consensus 479 GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~~~~~~~~~~~l~~qL~kL~~~L~ss~~~IsP~~fl~~L~k~~~~F~~ 558 (1015)
||.|+||+|||||+||+|++
T Consensus 1 gl~n~~~~cy~n~~~Q~l~~------------------------------------------------------------ 20 (230)
T cd02674 1 GLRNLGNTCYMNSILQCLSA------------------------------------------------------------ 20 (230)
T ss_pred CccccCcchhhhHHHHHHHH------------------------------------------------------------
Confidence 99999999999999999987
Q ss_pred CCcCcHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCcccceeeeeeeeeccccc--
Q 001772 559 GSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGW-- 636 (1015)
Q Consensus 559 g~QQDA~EFL~~LLd~Le~e~l~~~~~~~~~~~~~~~~s~I~~lF~G~l~~~i~C~~Cg~~s~~~E~f~~LsL~I~~~-- 636 (1015)
.||||+|||.+||+.|+ ++|.++|+|.+..+++|..|+..+.+.++|+.|+|+++..
T Consensus 21 -~QqDa~Ef~~~ll~~l~--------------------~~i~~~F~~~~~~~~~C~~C~~~~~~~e~~~~l~l~ip~~~~ 79 (230)
T cd02674 21 -DQQDAQEFLLFLLDGLH--------------------SIIVDLFQGQLKSRLTCLTCGKTSTTFEPFTYLSLPIPSGSG 79 (230)
T ss_pred -hhhhHHHHHHHHHHHHh--------------------hhHHheeCCEEeCcEEcCCCcCCcceecceeEEEEecccccC
Confidence 89999999999999997 2578999999999999999999999999999999999863
Q ss_pred ---cccHHHHHHhcCCCCcCCCCCccccccccccceeeeeeeeeccCceeEEEEEeeecc--cccccceeEecC-ccCCC
Q 001772 637 ---VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEG--RYGKINKCITFP-EMLDM 710 (1015)
Q Consensus 637 ---~~sLed~L~~f~~~E~Ldg~Nky~C~kC~~k~~A~K~~~I~~lP~iLiIqLkRF~~~--~~~Ki~~~V~fP-e~LDL 710 (1015)
..+|+++|+.|+.+|.++|.+++.|++|+.++.+.++..|.++|++|+|||+||... ...|++..|.|| +.|||
T Consensus 80 ~~~~~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~~~~~~K~~~~v~~~~~~l~l 159 (230)
T cd02674 80 DAPKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDL 159 (230)
T ss_pred CCCCCCHHHHHHHhcCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecCCCCcccCCceEecccccccc
Confidence 359999999999999999999999999999999999999999999999999999865 357999999999 47999
Q ss_pred CCccC-CCCCCCCceeEEEEEEEEcCCCCCCCCcEEEEEECCC-CcEEEEeCCceeeeCCccccCCCcEEEEEE
Q 001772 711 MPFMT-GTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQ-GTWFRIDDTQVHPVPMSQVMSEGAYMLFYM 782 (1015)
Q Consensus 711 ~~y~~-~~~~~~~~YeL~gVIvH~G~~~S~~sGHYVayVK~~d-g~W~~FNDs~Vt~vs~eeVls~~AYILfYe 782 (1015)
.+|+. .......+|+|+|||+|.|.. .+|||+||+|..+ ++|++|||+.|++++.+++....||||||+
T Consensus 160 ~~~~~~~~~~~~~~Y~L~~vI~H~G~~---~~GHY~~~~~~~~~~~W~~fnD~~V~~i~~~~~~~~~~YlL~Y~ 230 (230)
T cd02674 160 TPYVDTRSFTGPFKYDLYAVVNHYGSL---NGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230 (230)
T ss_pred ccccCcccCCCCceEEEEEEEEeeCCC---CCcEEEEEEECCCCCceEEEcCCeEEEcCHHHccCCCceEEEeC
Confidence 98853 233456789999999999973 6899999999864 899999999999999999988899999996
No 19
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-44 Score=412.65 Aligned_cols=349 Identities=24% Similarity=0.406 Sum_probs=277.3
Q ss_pred CCCceeeeccccccCcccccccccchhhhhHhhhcCc----eeeecchh--hhhhhhhhccCCCCCcccccCCCccchHH
Q 001772 418 GSNVVSKMGIMKMMGLRKSTKLRQDSSELWHDQHRKL----KMLFPYEE--FLKLFQYEVIDLLSPRGLLNCGNSCYANA 491 (1015)
Q Consensus 418 g~~hL~~~GI~k~~nl~~~~Kteks~~EL~~d~n~~~----~~~~~~E~--~~~l~~~~~~~~~~p~GL~NlGNTCYlNS 491 (1015)
=+...+-||...+.+|.+..-..+.......+....+ .++..+-+ +.....+.....+|++||+|+|.||||||
T Consensus 128 Fs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkdPTGVLWHsF~nYnSKkeTGYVGlrNqGATCYmNS 207 (1089)
T COG5077 128 FSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKDPTGVLWHSFLNYNSKKETGYVGLRNQGATCYMNS 207 (1089)
T ss_pred ccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeCCccceeecccccccccceeeeeeccCCceeeHHH
Confidence 3445667999888888877664333333322221111 22222111 12222333333489999999999999999
Q ss_pred HHHHHhcCHHHHHHHHhcccCcccCCCcchHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhcccCCCCCcCcHHHHHHHH
Q 001772 492 VLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLL 571 (1015)
Q Consensus 492 VLQ~L~sip~fr~~Ll~~~~~~~~~~~~~~l~~qL~kL~~~L~ss~~~IsP~~fl~~L~k~~~~F~~g~QQDA~EFL~~L 571 (1015)
+||.||.+..||+.+..... +.......+.-+|+++|..|+....+++..+|.... ++..+....|+|.|||-+.|
T Consensus 208 LlQslffi~~FRk~Vy~ipT--d~p~grdSValaLQr~Fynlq~~~~PvdTteltrsf--gWds~dsf~QHDiqEfnrVl 283 (1089)
T COG5077 208 LLQSLFFIAKFRKDVYGIPT--DHPRGRDSVALALQRLFYNLQTGEEPVDTTELTRSF--GWDSDDSFMQHDIQEFNRVL 283 (1089)
T ss_pred HHHHHHHHHHHHHHhhcCCC--CCCCccchHHHHHHHHHHHHhccCCCcchHHhhhhc--CcccchHHHHHhHHHHHHHH
Confidence 99999999999998865331 222345567789999999999999999999988665 33345566899999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCcccceeeeeeeeeccccccccHHHHHHhcCCCC
Q 001772 572 VASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPE 651 (1015)
Q Consensus 572 Ld~Le~e~l~~~~~~~~~~~~~~~~s~I~~lF~G~l~~~i~C~~Cg~~s~~~E~f~~LsL~I~~~~~sLed~L~~f~~~E 651 (1015)
.|.|++.. .+. .-.+.++.+|-|++.+.++|.+-.+++.+.|.||+|+|++++ ..+|+|+++.|...|
T Consensus 284 ~DnLEksm----rgt-------~VEnaln~ifVgkmksyikCvnvnyEsarvedfwdiqlNvK~-~knLqeSfr~yIqvE 351 (1089)
T COG5077 284 QDNLEKSM----RGT-------VVENALNGIFVGKMKSYIKCVNVNYESARVEDFWDIQLNVKG-MKNLQESFRRYIQVE 351 (1089)
T ss_pred HHHHHHhh----cCC-------hhhhHHhHHHHHHhhceeeEEEechhhhhHHHHHHHHhcccc-hhhHHHHHHHhhhhe
Confidence 99998732 111 122457899999999999999999999999999999999997 799999999999999
Q ss_pred cCCCCCccccccccccceeeeeeeeeccCceeEEEEEeeec----ccccccceeEecCccCCCCCccCCCC----CCCCc
Q 001772 652 DLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQE----GRYGKINKCITFPEMLDMMPFMTGTG----DTPPL 723 (1015)
Q Consensus 652 ~Ldg~Nky~C~kC~~k~~A~K~~~I~~lP~iLiIqLkRF~~----~~~~Ki~~~V~fPe~LDL~~y~~~~~----~~~~~ 723 (1015)
+++|+|+|.|++ ...+.|.|...|.++|++|.||||||++ +...||+++.+||+++||.+|++.+. ...+.
T Consensus 352 ~l~GdN~Y~ae~-~GlqdAkKGViFeSlPpVlhlqLKRFeyDfe~d~mvKINDryEFP~eiDl~pfld~da~ksen~d~v 430 (1089)
T COG5077 352 TLDGDNRYNAEK-HGLQDAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPLEIDLLPFLDRDADKSENSDAV 430 (1089)
T ss_pred eccCCccccccc-ccchhhccceeeccCchHHHHHHHHhccccccCceeeecccccCcchhccccccCchhhhhcccCcE
Confidence 999999999998 5578999999999999999999999964 45689999999999999999998543 23488
Q ss_pred eeEEEEEEEEcCCCCCCCCcEEEEEEC-CCCcEEEEeCCceeeeCCccccCC----------------------CcEEEE
Q 001772 724 YMLYSVVVHLDTQNASFSGHYVSYIKD-MQGTWFRIDDTQVHPVPMSQVMSE----------------------GAYMLF 780 (1015)
Q Consensus 724 YeL~gVIvH~G~~~S~~sGHYVayVK~-~dg~W~~FNDs~Vt~vs~eeVls~----------------------~AYILf 780 (1015)
|.|+||++|.|.+ +.|||+|++|- .+|+||+|||++|+.+++.+|+.+ +||||+
T Consensus 431 Y~LygVlVHsGDl---~~GHyYallKpe~dg~WykfdDtrVtrat~kevleeNfGgd~~~~~k~r~~~~~kRfmsAYmLv 507 (1089)
T COG5077 431 YVLYGVLVHSGDL---HEGHYYALLKPEKDGRWYKFDDTRVTRATEKEVLEENFGGDHPYKDKIRDHSGIKRFMSAYMLV 507 (1089)
T ss_pred EEEEEEEEecccc---CCceEEEEeccccCCCceeecceehhhHHHHHHHHHhcCCCCCCcccccCCchhhhhhhhheee
Confidence 9999999999964 48999999993 289999999999999998888741 589999
Q ss_pred EEEcCC
Q 001772 781 YMRSCP 786 (1015)
Q Consensus 781 YeR~~~ 786 (1015)
|-|++.
T Consensus 508 YlRks~ 513 (1089)
T COG5077 508 YLRKSM 513 (1089)
T ss_pred eehHhH
Confidence 999975
No 20
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-43 Score=415.54 Aligned_cols=310 Identities=33% Similarity=0.490 Sum_probs=258.4
Q ss_pred CCCcccccCCCccchHHHHHHHhcCHHHHHHHHhcccCccc----CCCcchHHHHHHHHHHHHHc--CCCCCChHHHHHH
Q 001772 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC----CGKDWCLMCELEQHVMMLRE--SAGPLSPGRILSH 548 (1015)
Q Consensus 475 ~~p~GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~~~~~----~~~~~~l~~qL~kL~~~L~s--s~~~IsP~~fl~~ 548 (1015)
.+.+||.|+|||||||++||||+.++.|+..++...+.... ......+...+.+++..++. ....+.|..|+..
T Consensus 299 ~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~~~~s~~P~~f~~~ 378 (653)
T KOG1868|consen 299 FGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGHGQFSVLPRRFIRV 378 (653)
T ss_pred cCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCCCceecCcHHHHHH
Confidence 67899999999999999999999999999776654332221 23345667777777776654 4557889999999
Q ss_pred HHhhcccCCCCCcCcHHHHHHHHHHHHHHHHHhhcCC-----CC--------CCC-----------Cccccccccccccc
Q 001772 549 MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGG-----ES--------KVD-----------PRLQETTFIQHTFG 604 (1015)
Q Consensus 549 L~k~~~~F~~g~QQDA~EFL~~LLd~Le~e~l~~~~~-----~~--------~~~-----------~~~~~~s~I~~lF~ 604 (1015)
+.+..+.|.++.|||+|||+.++++.||+++.+.... .. ... ........|.++|.
T Consensus 379 ~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~~d~~i~~lf~ 458 (653)
T KOG1868|consen 379 LKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEEEDSKIGDLFV 458 (653)
T ss_pred HhhcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccccchHHHHHHH
Confidence 9999999999999999999999999999998664210 00 000 00113344899999
Q ss_pred eEEEEEEEecCCCCcccceeeeeeeeecccccc-----ccHHHHHHhcCCCCcCCCCCccccccccccceee--eeeeee
Q 001772 605 GRLWSKVKCLRCSHESERYENIMDLTLEIYGWV-----ESLEDALTQFTSPEDLDGENMYKCARCATYVRAR--KQLSIH 677 (1015)
Q Consensus 605 G~l~~~i~C~~Cg~~s~~~E~f~~LsL~I~~~~-----~sLed~L~~f~~~E~Ldg~Nky~C~kC~~k~~A~--K~~~I~ 677 (1015)
|++++.++|..||+++.+++.|.+|+|+|+... .+|++|+..|+..|.+++++.|.|++|+.+.... |++.|.
T Consensus 459 gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~~~~~~L~~C~~~ft~~ekle~~~~w~Cp~c~~~~~~~~lK~~~i~ 538 (653)
T KOG1868|consen 459 GQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFAGGKVSLEDCLSLFTKEEKLEGDEAWLCPRCKHKESSKTLKKLTIL 538 (653)
T ss_pred HHHHhheehhhcCCcceeeecceeeEEecccccccccccchHhhhccccchhhcccccccCCccccCcccccccceeeee
Confidence 999999999999999999999999999998532 4599999999999999999999999999999985 999999
Q ss_pred ccCceeEEEEEeeecc--cccccceeEecCc-cCCCCCccCCCCCCCCceeEEEEEEEEcCCCCCCCCcEEEEEECC-CC
Q 001772 678 EAPNILTIVLKRFQEG--RYGKINKCITFPE-MLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM-QG 753 (1015)
Q Consensus 678 ~lP~iLiIqLkRF~~~--~~~Ki~~~V~fPe-~LDL~~y~~~~~~~~~~YeL~gVIvH~G~~~S~~sGHYVayVK~~-dg 753 (1015)
++|++|+|||+||... ...|....|+||. .+|+.++.....+....|+|+|||+|.|+.+ +|||+||+++. .+
T Consensus 539 ~lp~iLiihL~Rf~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~Gtl~---sGHYta~~~~~~~~ 615 (653)
T KOG1868|consen 539 RLPKILIIHLKRFSSDGNSFNKLSTGVDFPLREADLSPRFAEKGNNPKSYRLYAVVNHSGTLN---SGHYTAYVYKNEKQ 615 (653)
T ss_pred cCCHHHHHHHHHhccCcccccccceeeccchHhhhhchhccccCCCccceeeEEEEeccCccc---CCceEEEEeecCCC
Confidence 9999999999999865 4578889999995 6677767776777778899999999999655 99999999774 57
Q ss_pred cEEEEeCCceeeeCCccccCCCcEEEEEEEcCCC
Q 001772 754 TWFRIDDTQVHPVPMSQVMSEGAYMLFYMRSCPR 787 (1015)
Q Consensus 754 ~W~~FNDs~Vt~vs~eeVls~~AYILfYeR~~~~ 787 (1015)
.|+.|||+.|+.+...++....||||||+|..+.
T Consensus 616 ~W~~fdDs~Vs~~~~~~~~~s~aYIlFY~~~~~~ 649 (653)
T KOG1868|consen 616 RWFTFDDSEVSPISETDVGSSSAYILFYERLGIF 649 (653)
T ss_pred ceEEecCeeeeccccccccCCCceEEEeecCCcc
Confidence 8999999999998888888889999999998764
No 21
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1e-41 Score=368.70 Aligned_cols=238 Identities=25% Similarity=0.429 Sum_probs=191.6
Q ss_pred cccCCCccchHHHHHHHhcCHHHHHHHHhcccCcccCCCcchHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhcccCCCC
Q 001772 480 LLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGDG 559 (1015)
Q Consensus 480 L~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~~~~~~~~~~~l~~qL~kL~~~L~ss~~~IsP~~fl~~L~k~~~~F~~g 559 (1015)
|+|.||+||+||.+|+|.+ |+++++.|.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~--------------------------------------------------i~~~~~~F~~~ 31 (245)
T cd02673 2 LVNTGNSCYFNSTMQALSS--------------------------------------------------IGKINTEFDND 31 (245)
T ss_pred ceecCCeeeehhHHHHHHH--------------------------------------------------HhhhhhhcCCC
Confidence 7899999999999999853 45567799999
Q ss_pred CcCcHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCcccceeeeeeeeeccccc-cc
Q 001772 560 SQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGW-VE 638 (1015)
Q Consensus 560 ~QQDA~EFL~~LLd~Le~e~l~~~~~~~~~~~~~~~~s~I~~lF~G~l~~~i~C~~Cg~~s~~~E~f~~LsL~I~~~-~~ 638 (1015)
+||||||||++|||.|++++............. .......++|+|.+++.++|..|++++.+.++|++|+|+++.. ..
T Consensus 32 ~QQDAhEFL~~LLd~l~~~~~~~~~~~~~~~~~-~~~~~~~~~F~~~l~s~i~C~~C~~~s~~~e~~~~L~L~i~~~~~~ 110 (245)
T cd02673 32 DQQDAHEFLLTLLEAIDDIMQVNRTNVPPSNIE-IKRLNPLEAFKYTIESSYVCIGCSFEENVSDVGNFLDVSMIDNKLD 110 (245)
T ss_pred chhhHHHHHHHHHHHHHHHHHhhcccCCCCccc-ccccCHhHheeeEEEeEEEecCCCCeeeeccccceeccccccCCcc
Confidence 999999999999999998765432211100000 1111235789999999999999999999999999999999864 46
Q ss_pred cHHHHHHhcCCCCcCCCCCccccccccccceeeeeeeeeccCceeEEEEEeeecccccccceeEecCccCCCCCccCCCC
Q 001772 639 SLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGRYGKINKCITFPEMLDMMPFMTGTG 718 (1015)
Q Consensus 639 sLed~L~~f~~~E~Ldg~Nky~C~kC~~k~~A~K~~~I~~lP~iLiIqLkRF~~~~~~Ki~~~V~fPe~LDL~~y~~~~~ 718 (1015)
.|++++..|...+.++ |.|++|+.+ .+.++.+|.++|++|+|||+||.... ++...+.+ ..++|.+|+.
T Consensus 111 ~le~l~~~~~~~~~~e----~~C~~C~~~-~a~k~~~i~~~P~vL~i~lkRf~~~~--~~~~~~~~-~~~~~~~~~~--- 179 (245)
T cd02673 111 IDELLISNFKTWSPIE----KDCSSCKCE-SAISSERIMTFPECLSINLKRYKLRI--ATSDYLKK-NEEIMKKYCG--- 179 (245)
T ss_pred hHHHHHHHhhcccccC----ccCCCCCCc-cceeechhhhCChhhEEeeEeeeecc--cccccccc-cccccccccC---
Confidence 7889999988877776 899999976 78888999999999999999996432 22222222 2456777764
Q ss_pred CCCCceeEEEEEEEEcCCCCCCCCcEEEEEECC--CCcEEEEeCCceeeeCCcccc---CCCcEEEEEE
Q 001772 719 DTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM--QGTWFRIDDTQVHPVPMSQVM---SEGAYMLFYM 782 (1015)
Q Consensus 719 ~~~~~YeL~gVIvH~G~~~S~~sGHYVayVK~~--dg~W~~FNDs~Vt~vs~eeVl---s~~AYILfYe 782 (1015)
....|+|+|||+|.|. +.++|||+||+|.. +++||+|||+.|+++++++|+ ...||||||+
T Consensus 180 -~~~~Y~L~~VV~H~G~--~~~~GHY~a~vk~~~~~~~Wy~fnD~~V~~v~~~~v~~~~~~~aYiLFY~ 245 (245)
T cd02673 180 -TDAKYSLVAVICHLGE--SPYDGHYIAYTKELYNGSSWLYCSDDEIRPVSKNDVSTNARSSGYLIFYD 245 (245)
T ss_pred -CCceEEEEEEEEECCC--CCCCceEEEEEEcCCCCCeEEEeeCceeeEcCHHHHhhccCCceEEEEEC
Confidence 3567999999999997 56799999999985 579999999999999999998 4689999995
No 22
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=7.7e-42 Score=364.66 Aligned_cols=249 Identities=37% Similarity=0.634 Sum_probs=200.1
Q ss_pred CcccccCCCccchHHHHHHHhcCHHHHHHHHhcc-----cCcccCCCcchHHHHHHHHHHHHHcC---CCCCChHHHHHH
Q 001772 477 PRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRS-----HSSACCGKDWCLMCELEQHVMMLRES---AGPLSPGRILSH 548 (1015)
Q Consensus 477 p~GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~-----~~~~~~~~~~~l~~qL~kL~~~L~ss---~~~IsP~~fl~~ 548 (1015)
|+||.|.||||||||+||+|+++|+|+++++... ..........++.++|+.|+..|+.. ...+.|..|+..
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~ 80 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA 80 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence 6899999999999999999999999999998651 12222344567999999999999976 567999999999
Q ss_pred HHhhcccCCCCCcCcHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCcccceeeeee
Q 001772 549 MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMD 628 (1015)
Q Consensus 549 L~k~~~~F~~g~QQDA~EFL~~LLd~Le~e~l~~~~~~~~~~~~~~~~s~I~~lF~G~l~~~i~C~~Cg~~s~~~E~f~~ 628 (1015)
+....+.|..+.||||+|||..||+.|+.++.................+++.++|.+.+...+.|..|+..
T Consensus 81 l~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~c~~c~~~--------- 151 (269)
T PF00443_consen 81 LSSINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFKRKSWKNTNSSEDSLISDLFGGQFESSIKCSSCKNS--------- 151 (269)
T ss_dssp HHHHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSSHHHHHHHHCCEESHHHHHH-EEEEEEEEETTTTCE---------
T ss_pred ccccccccccccccchhhhhcccccccchhhcccccccccccccccccccccccccccccccccccccccc---------
Confidence 99999999999999999999999999998764422100000111234578899999999999999999776
Q ss_pred eeeccccccccHHHHHHhcCCCCcCCCCCccccccccccceeeeeeeeeccCceeEEEEEeeec----ccccccceeEec
Q 001772 629 LTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQE----GRYGKINKCITF 704 (1015)
Q Consensus 629 LsL~I~~~~~sLed~L~~f~~~E~Ldg~Nky~C~kC~~k~~A~K~~~I~~lP~iLiIqLkRF~~----~~~~Ki~~~V~f 704 (1015)
+..|.++|++|+|+|+||.+ +...|+...|.|
T Consensus 152 --------------------------------------------~~~~~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~ 187 (269)
T PF00443_consen 152 --------------------------------------------QSSISSLPPILIIQLKRFEFDQETGRSKKINNPVEF 187 (269)
T ss_dssp --------------------------------------------EEEEEEBBSEEEEEEE-EEEESTSSEEEE--CEEB-
T ss_pred --------------------------------------------ccccccccceeeeccccceecccccccccccccccc
Confidence 45789999999999999942 235799999999
Q ss_pred C-ccCCCCCccCCCCC---CCCceeEEEEEEEEcCCCCCCCCcEEEEEECCC-CcEEEEeCCceeeeCCccccC---CCc
Q 001772 705 P-EMLDMMPFMTGTGD---TPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQ-GTWFRIDDTQVHPVPMSQVMS---EGA 776 (1015)
Q Consensus 705 P-e~LDL~~y~~~~~~---~~~~YeL~gVIvH~G~~~S~~sGHYVayVK~~d-g~W~~FNDs~Vt~vs~eeVls---~~A 776 (1015)
| +.|||.+++..+.. ....|+|+|||+|.|. .++|||+||||+.+ ++|++|||++|++++.++|.. ..|
T Consensus 188 ~~~~l~l~~~~~~~~~~~~~~~~Y~L~avi~H~G~---~~~GHY~a~v~~~~~~~W~~~dD~~v~~~~~~~v~~~~~~~~ 264 (269)
T PF00443_consen 188 PLEELDLSPYLEKNNSECQSNVKYRLVAVIVHYGS---ADSGHYVAYVRDSDDGKWYKFDDSRVTEVSWEEVIKSSNSTA 264 (269)
T ss_dssp -SSEEEGGGGBSSCCCTHTSSSEEEEEEEEEEESS---TTSEEEEEEEEETTTTEEEEEETTEEEEESHHHHCCGGSTCE
T ss_pred Cchhhhhhhhhccccccccccceeeehhhhccccc---cccceEEEeeccccCCeEEEeeCCceEECCHHHHhhccCCce
Confidence 9 79999999876553 3689999999999995 34899999998854 469999999999999999988 899
Q ss_pred EEEEE
Q 001772 777 YMLFY 781 (1015)
Q Consensus 777 YILfY 781 (1015)
|||||
T Consensus 265 yll~Y 269 (269)
T PF00443_consen 265 YLLFY 269 (269)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 99999
No 23
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-43 Score=406.55 Aligned_cols=311 Identities=30% Similarity=0.446 Sum_probs=263.9
Q ss_pred CCCcccccCCCccchHHHHHHHhcCHHHHHHHHhcccCcc-cC-CCcchHHHHHHHHHHHHHcCC-CCCChHHHHHHHHh
Q 001772 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSA-CC-GKDWCLMCELEQHVMMLRESA-GPLSPGRILSHMRS 551 (1015)
Q Consensus 475 ~~p~GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~~~~-~~-~~~~~l~~qL~kL~~~L~ss~-~~IsP~~fl~~L~k 551 (1015)
.+.+||+|-|+|||||+++|-|.++|.++.-++...+... .. .-...++++++.+|..|..++ +.+-|..|-+.++.
T Consensus 93 ~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~s~~e~vl~~lQ~iF~hL~~s~lQyyVPeg~Wk~Fr~ 172 (944)
T KOG1866|consen 93 EGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDMSGDEKVLRHLQVIFGHLAASQLQYYVPEGFWKQFRL 172 (944)
T ss_pred cceeeecCCCchHHHhhhhhhhhhcccccchhhhhcccccchhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHhhc
Confidence 5679999999999999999999999999987765444411 11 112338999999999987544 67899999999988
Q ss_pred hcccCCCCCcCcHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCcccceeeeeeeee
Q 001772 552 ISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTL 631 (1015)
Q Consensus 552 ~~~~F~~g~QQDA~EFL~~LLd~Le~e~l~~~~~~~~~~~~~~~~s~I~~lF~G~l~~~i~C~~Cg~~s~~~E~f~~LsL 631 (1015)
.+..++..+||||.|||..|||.+++.+ +.++. ..++++.|+|.+...-.|..|-+.-...|.|..|.|
T Consensus 173 ~~~pln~reqhDA~eFf~sLld~~De~L-Kklg~----------p~lf~n~f~G~ysdqKIC~~CpHRY~~eE~F~~l~l 241 (944)
T KOG1866|consen 173 WGEPLNLREQHDALEFFNSLLDSLDEAL-KKLGH----------PQLFSNTFGGSYSDQKICQGCPHRYECEESFTTLNL 241 (944)
T ss_pred cCCccchHhhhhHHHHHHHHHHHHHHHH-HHhCC----------cHHHHHHhcCccchhhhhccCCcccCccccceeeee
Confidence 8888999999999999999999998764 44432 246889999999999999999999999999999999
Q ss_pred ccccccccHHHHHHhcCCCCcCCCCCccccccccccceeeeeeeeeccCceeEEEEEeeecc----cccccceeEecCcc
Q 001772 632 EIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEG----RYGKINKCITFPEM 707 (1015)
Q Consensus 632 ~I~~~~~sLed~L~~f~~~E~Ldg~Nky~C~kC~~k~~A~K~~~I~~lP~iLiIqLkRF~~~----~~~Ki~~~V~fPe~ 707 (1015)
.|. -.+|+++|++|.+.|+++|.|.|+|++|+++....|++.|+++|.+|+||||||.++ ...|.++.++||.+
T Consensus 242 ~i~--~~nLeesLeqfv~gevlEG~nAYhCeKCdeK~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP~~ 319 (944)
T KOG1866|consen 242 DIR--HQNLEESLEQFVKGEVLEGANAYHCEKCDEKVDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYFRFPRE 319 (944)
T ss_pred ecc--cchHHHHHHHHHHHHHhcCcchhhhhhhhhhhHhHHHHHHhhCChhheehhhhccchhhhccccccchhcccchh
Confidence 998 479999999999999999999999999999999999999999999999999999754 33799999999999
Q ss_pred CCCCCccCCC-----------------CCCCCceeEEEEEEEEcCCCCCCCCcEEEEEECC----CCcEEEEeCCceeee
Q 001772 708 LDMMPFMTGT-----------------GDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM----QGTWFRIDDTQVHPV 766 (1015)
Q Consensus 708 LDL~~y~~~~-----------------~~~~~~YeL~gVIvH~G~~~S~~sGHYVayVK~~----dg~W~~FNDs~Vt~v 766 (1015)
|||.||+..+ ..++.+|+|+|||+|.|. ++.|||++||+.. .++||+|||..|++.
T Consensus 320 ldMePYtvsg~a~~e~~~~~~g~~~e~s~~t~~YeLvGVlvHSGq---AsaGHYySfIk~rr~~~~~kWykfnD~~Vte~ 396 (944)
T KOG1866|consen 320 LDMEPYTVSGVAKLEGENVESGQQLEQSAGTTKYELVGVLVHSGQ---ASAGHYYSFIKQRRGEDGNKWYKFNDGDVTEC 396 (944)
T ss_pred hcCCceeehhhhhhccccCCcCcccccccCcceeEEEEEEEeccc---ccCcchhhhhhhhccCCCCceEeccCcccccc
Confidence 9999997522 125679999999999996 4489999999863 579999999999999
Q ss_pred CCccccC--------------------CCcEEEEEEEcCCCCCcccchhhhhccC
Q 001772 767 PMSQVMS--------------------EGAYMLFYMRSCPRPRRTLSRKAMQQQV 801 (1015)
Q Consensus 767 s~eeVls--------------------~~AYILfYeR~~~~~~~~~~~~~~~~~~ 801 (1015)
+..++.. -+||||||+|.+..|....+.......+
T Consensus 397 ~~n~me~~cfGGey~q~~~~~~~rrR~WNAYmlFYer~~d~p~~~~p~~~~~~l~ 451 (944)
T KOG1866|consen 397 KMNEMENECFGGEYMQMMKRMSYRRRWWNAYMLFYERMDDIPTDDEPIREILSLT 451 (944)
T ss_pred chhhHHHHhhcchhhhcccccchHHHhhhhHHHHHHHhcCCCccccccccccccc
Confidence 8765432 2799999999999888766665544333
No 24
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6e-41 Score=378.40 Aligned_cols=271 Identities=23% Similarity=0.320 Sum_probs=213.3
Q ss_pred CcccccCCCccchHHHHHHHhcCHHHHHHHHhcccCcc-----------cC---------CCcchHHHHHHHHHHHHHcC
Q 001772 477 PRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSA-----------CC---------GKDWCLMCELEQHVMMLRES 536 (1015)
Q Consensus 477 p~GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~~~~-----------~~---------~~~~~l~~qL~kL~~~L~ss 536 (1015)
|+||.|+||||||||+||+|+++|+||++++....... .. ....+|+.+|+.||..|..+
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 79999999999999999999999999999987542211 00 01236999999999999866
Q ss_pred C-CCCChHHHHHHHHhhcccCCCCCcCcHHHHHHHHHHHHHHHHHhhcCCC--CCCCCccccccccccccceEEEEEEEe
Q 001772 537 A-GPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGE--SKVDPRLQETTFIQHTFGGRLWSKVKC 613 (1015)
Q Consensus 537 ~-~~IsP~~fl~~L~k~~~~F~~g~QQDA~EFL~~LLd~Le~e~l~~~~~~--~~~~~~~~~~s~I~~lF~G~l~~~i~C 613 (1015)
. ..+.|..++..+.. .||||+||+..||+.|+.++....... ..........++|.++|.|++.+.++|
T Consensus 81 ~~~~v~P~~~l~~l~~--------~QQDa~Ef~~~lld~Le~~lk~~~~~~~~~~~~~~~~~~~~I~~lF~G~~~~~i~c 152 (343)
T cd02666 81 NTRSVTPSKELAYLAL--------RQQDVTECIDNVLFQLEVALEPISNAFAGPDTEDDKEQSDLIKRLFSGKTKQQLVP 152 (343)
T ss_pred CCCccCcHHHHHhccc--------cccchHHHHHHHHHHHHHHhcCccccccCcccccccchhhhhhHhceeeEEEEEEe
Confidence 5 78999999876632 899999999999999998764321100 001112245679999999999999999
Q ss_pred cCCC---Ccccceeeeeeeeecccc---------ccccHHHHHHhcCCCCcCCCCCccccccccccceeeeeeeeeccCc
Q 001772 614 LRCS---HESERYENIMDLTLEIYG---------WVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPN 681 (1015)
Q Consensus 614 ~~Cg---~~s~~~E~f~~LsL~I~~---------~~~sLed~L~~f~~~E~Ldg~Nky~C~kC~~k~~A~K~~~I~~lP~ 681 (1015)
..|+ ..+.+.|+|++|+|+|.. ...+|++||+.|+..|. |.++|+
T Consensus 153 ~~~~~~~~~s~~~E~F~~L~l~I~~~~~~~~~~~~~~~L~d~L~~~~~~e~-----------------------~~~~P~ 209 (343)
T cd02666 153 ESMGNQPSVRTKTERFLSLLVDVGKKGREIVVLLEPKDLYDALDRYFDYDS-----------------------LTKLPQ 209 (343)
T ss_pred cccCCCCCCccccceeEEEEEecCcccccccccCCCCCHHHHHHHhcChhh-----------------------hccCCH
Confidence 9997 678999999999999986 67899999999998665 889999
Q ss_pred eeEEEEEeeec--ccccccceeEecCccCCCCCccCCC----------------------------CCCCCceeEEEEEE
Q 001772 682 ILTIVLKRFQE--GRYGKINKCITFPEMLDMMPFMTGT----------------------------GDTPPLYMLYSVVV 731 (1015)
Q Consensus 682 iLiIqLkRF~~--~~~~Ki~~~V~fPe~LDL~~y~~~~----------------------------~~~~~~YeL~gVIv 731 (1015)
+|.|||+ +.. ....+..++.+||...|+.+++... ......|+|+|||+
T Consensus 210 vl~~qlq-~~~~~~~~~~~~dry~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Y~L~avv~ 288 (343)
T cd02666 210 RSQVQAQ-LAQPLQRELISMDRYELPSSIDDIDELIREAIQSESSLVRQAQNELAELKHEIEKQFDDLKSYGYRLHAVFI 288 (343)
T ss_pred HHHHHHh-hcccccchheeeccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceEEEEEEE
Confidence 9999998 322 1224566666777666655443210 11577899999999
Q ss_pred EEcCCCCCCCCcEEEEEECC-CCcEEEEeCCceeeeCCccccC------CCcEEEEEE
Q 001772 732 HLDTQNASFSGHYVSYIKDM-QGTWFRIDDTQVHPVPMSQVMS------EGAYMLFYM 782 (1015)
Q Consensus 732 H~G~~~S~~sGHYVayVK~~-dg~W~~FNDs~Vt~vs~eeVls------~~AYILfYe 782 (1015)
|.|.. ++|||++|+|+. ++.||+|||..|++++.++|+. .+||||+|.
T Consensus 289 H~G~~---~~GHY~~~~~~~~~~~W~~~dD~~V~~v~~~ev~~~~~~~~~~pY~l~Yv 343 (343)
T cd02666 289 HRGEA---SSGHYWVYIKDFEENVWRKYNDETVTVVPASEVFLFTLGNTATPYFLVYV 343 (343)
T ss_pred eecCC---CCCeEEEEEEECCCCeEEEEECCeeEEecHHHHhhcccCCCCCCEEEEeC
Confidence 99963 699999999975 5799999999999999888875 479999994
No 25
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.5e-40 Score=353.15 Aligned_cols=217 Identities=25% Similarity=0.392 Sum_probs=182.0
Q ss_pred ccccCCCccchHHHHHHHhcCHHHHHHHHhcccCcccCCCcchHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhcccCCC
Q 001772 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGD 558 (1015)
Q Consensus 479 GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~~~~~~~~~~~l~~qL~kL~~~L~ss~~~IsP~~fl~~L~k~~~~F~~ 558 (1015)
||.|.|||||+|+|.|+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 20 (228)
T cd02665 1 GLKNVGNTCWFSAVIQSLFS------------------------------------------------------------ 20 (228)
T ss_pred CccccCcchhHHHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999985
Q ss_pred CCcCcHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCcccceeeeeeeeeccccccc
Q 001772 559 GSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWVE 638 (1015)
Q Consensus 559 g~QQDA~EFL~~LLd~Le~e~l~~~~~~~~~~~~~~~~s~I~~lF~G~l~~~i~C~~Cg~~s~~~E~f~~LsL~I~~~~~ 638 (1015)
.||||+||++.||+.|++.+..... ...+.....++|.++|+|.+...+.| |+..+.+.|+|++|+|+|.+ ..
T Consensus 21 -~QQDa~Ef~~~Lld~Le~~l~~~~~---~~~~~~~~~~~i~~lF~G~~~~~~~~--~~~~s~~~E~F~~L~l~i~~-~~ 93 (228)
T cd02665 21 -QQQDVSEFTHLLLDWLEDAFQAAAE---AISPGEKSKNPMVQLFYGTFLTEGVL--EGKPFCNCETFGQYPLQVNG-YG 93 (228)
T ss_pred -HHHHHHHHHHHHHHHHHHHhccccc---cccccccccchHhhceEEEEEEEEEE--CCCcccccCccEEEEEEECC-CC
Confidence 6999999999999999987643211 01122245678999999999987776 78889999999999999987 48
Q ss_pred cHHHHHHhcCCCCcCCCCCccccccccccceeeeeeeeeccCceeEEEEEeeecc--cccccceeEecCccCCCCCccCC
Q 001772 639 SLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEG--RYGKINKCITFPEMLDMMPFMTG 716 (1015)
Q Consensus 639 sLed~L~~f~~~E~Ldg~Nky~C~kC~~k~~A~K~~~I~~lP~iLiIqLkRF~~~--~~~Ki~~~V~fPe~LDL~~y~~~ 716 (1015)
+|++||+.|+..|.+++++.++ ...+.++..|.++|++|+|||+||.+. ...|+++.|.||..|
T Consensus 94 ~L~e~L~~~~~ee~l~~~~~~~------~~~~~~~~~i~~lP~vL~i~LkRF~~~~~~~~Ki~~~v~FP~~l-------- 159 (228)
T cd02665 94 NLHECLEAAMFEGEVELLPSDH------SVKSGQERWFTELPPVLTFELSRFEFNQGRPEKIHDKLEFPQII-------- 159 (228)
T ss_pred CHHHHHHHhhhhcccccccccc------hhhhhhhhhhhhCChhhEEEeEeeEEcCCccEECCEEEEeeCcc--------
Confidence 9999999999999998754322 234566778999999999999999864 357999999999887
Q ss_pred CCCCCCceeEEEEEEEEcCCCCCCCCcEEEEEECC-CCcEEEEeCCceeeeCCccccC--------CCcEEEEEE
Q 001772 717 TGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM-QGTWFRIDDTQVHPVPMSQVMS--------EGAYMLFYM 782 (1015)
Q Consensus 717 ~~~~~~~YeL~gVIvH~G~~~S~~sGHYVayVK~~-dg~W~~FNDs~Vt~vs~eeVls--------~~AYILfYe 782 (1015)
....|+|+|||+|.|. +++|||+||+|.. +++||+|||+.|++++.++|.. ..||||||.
T Consensus 160 ---~~~~Y~L~aVi~H~G~---~~~GHY~~~i~~~~~~~W~~fdD~~V~~~~~~~v~~~~fGg~~~~~AYiLfYv 228 (228)
T cd02665 160 ---QQVPYELHAVLVHEGQ---ANAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERDSFGGGRNPSAYCLMYI 228 (228)
T ss_pred ---CCceeEEEEEEEecCC---CCCCEEEEEEEcCCCCEEEEEECCeeEEcCHHHHhhhccCCCCCCceEEEEEC
Confidence 2458999999999995 4599999999864 7899999999999999888864 369999994
No 26
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.4e-39 Score=339.66 Aligned_cols=235 Identities=39% Similarity=0.638 Sum_probs=202.4
Q ss_pred ccccCCCccchHHHHHHHhcCHHHHHHHHhcccCcccCCCcchHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhcccCCC
Q 001772 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGD 558 (1015)
Q Consensus 479 GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~~~~~~~~~~~l~~qL~kL~~~L~ss~~~IsP~~fl~~L~k~~~~F~~ 558 (1015)
||.|.||+||+||+||+|++
T Consensus 1 Gl~N~~n~Cy~ns~lq~l~~------------------------------------------------------------ 20 (255)
T cd02257 1 GLNNLGNTCYLNSVLQALFS------------------------------------------------------------ 20 (255)
T ss_pred CccccCcchHHhHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999997
Q ss_pred CCcCcHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCcccceeeeeeeeeccccc--
Q 001772 559 GSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGW-- 636 (1015)
Q Consensus 559 g~QQDA~EFL~~LLd~Le~e~l~~~~~~~~~~~~~~~~s~I~~lF~G~l~~~i~C~~Cg~~s~~~E~f~~LsL~I~~~-- 636 (1015)
.||||+|||..||+.|+.++...... ........+.+.++|.+.+...+.|..|+..+.....+..+.|+++..
T Consensus 21 -~q~Da~E~l~~ll~~l~~~~~~~~~~---~~~~~~~~~~i~~~F~~~~~~~~~c~~c~~~~~~~~~~~~l~l~~~~~~~ 96 (255)
T cd02257 21 -EQQDAHEFLLFLLDKLHEELKKSSKR---TSDSSSLKSLIHDLFGGKLESTIVCLECGHESVSTEPELFLSLPLPVKGL 96 (255)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhhccc---ccccccCCchhhhhcccEEeeEEECCCCCCCccCcccceeEEeeccCCCC
Confidence 89999999999999999876543221 111123346899999999999999999998888877888888888764
Q ss_pred -cccHHHHHHhcCCCCcCCCCCcccccccc--ccceeeeeeeeeccCceeEEEEEeeecc---cccccceeEecCccCCC
Q 001772 637 -VESLEDALTQFTSPEDLDGENMYKCARCA--TYVRARKQLSIHEAPNILTIVLKRFQEG---RYGKINKCITFPEMLDM 710 (1015)
Q Consensus 637 -~~sLed~L~~f~~~E~Ldg~Nky~C~kC~--~k~~A~K~~~I~~lP~iLiIqLkRF~~~---~~~Ki~~~V~fPe~LDL 710 (1015)
..+|+++|+.++..|.+++ +.|..|+ ..+.+.++..|.++|++|+|+|+||... ...|++..|.||++|++
T Consensus 97 ~~~~l~~~l~~~~~~e~~~~---~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~k~~~~v~~~~~l~~ 173 (255)
T cd02257 97 PQVSLEDCLEKFFKEEILEG---DNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKLNTKVSFPLELDL 173 (255)
T ss_pred CCCcHHHHHHHhhhhhccCC---CCcccCCCCcccceeEEEecccCCceeEEEeeceeeccccccccCCCeEeCCCcccC
Confidence 4899999999999999997 7788887 6888889999999999999999999764 46799999999999999
Q ss_pred CCccCC------CCCCCCceeEEEEEEEEcCCCCCCCCcEEEEEECCC-CcEEEEeCCceeeeCCccc-----cCCCcEE
Q 001772 711 MPFMTG------TGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQ-GTWFRIDDTQVHPVPMSQV-----MSEGAYM 778 (1015)
Q Consensus 711 ~~y~~~------~~~~~~~YeL~gVIvH~G~~~S~~sGHYVayVK~~d-g~W~~FNDs~Vt~vs~eeV-----ls~~AYI 778 (1015)
..++.. .......|+|+|||+|.|. +..+|||+||+|... ++||+|||..|++++.+++ ....|||
T Consensus 174 ~~~~~~~~~~~~~~~~~~~Y~L~~vi~h~G~--~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~~~~~~~~~~~~yl 251 (255)
T cd02257 174 SPYLSEGEKDSDSDNGSYKYELVAVVVHSGT--SADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEFGSLSSSAYI 251 (255)
T ss_pred ccccccccccccccCCCccEEEEEEEEEecC--CCCCcCeEEEEeCCCCCceEEEeccccEEcCHHHhhhccCCCCceEE
Confidence 888642 3345679999999999997 557999999999965 8999999999999999998 4678999
Q ss_pred EEEE
Q 001772 779 LFYM 782 (1015)
Q Consensus 779 LfYe 782 (1015)
|||+
T Consensus 252 l~Y~ 255 (255)
T cd02257 252 LFYE 255 (255)
T ss_pred EEEC
Confidence 9995
No 27
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-39 Score=380.50 Aligned_cols=307 Identities=34% Similarity=0.589 Sum_probs=268.3
Q ss_pred CCCcccccCCCccchHHHHHHHhcCHHHHHHHHhcccCcccCCC-cchHHHHHHHHHHHHHcC--CCCCChHHHHHHHHh
Q 001772 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGK-DWCLMCELEQHVMMLRES--AGPLSPGRILSHMRS 551 (1015)
Q Consensus 475 ~~p~GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~~~~~~~~-~~~l~~qL~kL~~~L~ss--~~~IsP~~fl~~L~k 551 (1015)
.+.+||.|+|+||+||++||.|.+.+..+...+...+....... ..++.+.+.+++..+++. ..++.|..++..+++
T Consensus 159 ~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~~~~~~~~l~~~~~~~~~~~~s~~~~~~~sp~~~l~~~~k 238 (492)
T KOG1867|consen 159 LGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEPSSSGSSCLVCDLDRLFQALYSGHNRTPYSPFELLNLVWK 238 (492)
T ss_pred ecccccccccHHHHHHHHHHHhhccchhhccchhhhcccCCCCCCCcchhhhhhhhhhHhhcCCCCCCcChHHHHHHHHH
Confidence 67899999999999999999999999999988888888666565 889999999999999865 468999999999999
Q ss_pred hcccCCCCCcCcHHHHHHHHHHHHHHHHHhhcCCCCCCCC--ccccccccccccceEEEEEEEecCCCCcccceeeeeee
Q 001772 552 ISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDP--RLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDL 629 (1015)
Q Consensus 552 ~~~~F~~g~QQDA~EFL~~LLd~Le~e~l~~~~~~~~~~~--~~~~~s~I~~lF~G~l~~~i~C~~Cg~~s~~~E~f~~L 629 (1015)
..+.+.+.+||||+||+..+++.++.+. ...+...... .....+++...|.|.+...+.|..|+..+..+++|++|
T Consensus 239 ~~~~~~g~~Qqda~eF~~~~~~~~~~~~--~~~~k~~~~~~~~~~c~~iv~~~F~G~L~~~v~c~~c~~~S~~~dpf~di 316 (492)
T KOG1867|consen 239 HSPNLAGYEQQDAHEFLIALLDRLHREK--DDCGKSLIASQSNKQCPCIVHTIFSGTLQSDVTCQTCGSKSTTYDPFMDI 316 (492)
T ss_pred hCcccccccccchHHHHHHhcccccccc--cccccccccccCCcccccccceeecceeccceeehhhcceeeeccCccce
Confidence 9999999999999999999999999865 1111100000 11346889999999999999999999999999999999
Q ss_pred eecccccc---------ccHHHHHHhcCCCCcCCCCCccccccccccceeeeeeeeeccCceeEEEEEeeec---ccccc
Q 001772 630 TLEIYGWV---------ESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQE---GRYGK 697 (1015)
Q Consensus 630 sL~I~~~~---------~sLed~L~~f~~~E~Ldg~Nky~C~kC~~k~~A~K~~~I~~lP~iLiIqLkRF~~---~~~~K 697 (1015)
+|.|+..- ..+.+|+..|...|......++.|..|+.++.+.|++.|..+|.+|.+|++||.. +...|
T Consensus 317 sL~i~~~~~~~~~~~~~~~~~~cl~~~~~~~~~~~~~~~~c~~c~~~~~~~kql~~~~lP~~l~~~lkRfe~~~~~~~~k 396 (492)
T KOG1867|consen 317 SLDIPDQFTSSSVRSPELTLLDCLDRFTRSEQLGKDSKYKCSSCKSKQESTKQLTIRKLPAVLCLHLKRFEHSATGAREK 396 (492)
T ss_pred eeecchhccCcccccchhhhhhhhhhhhhhhhcCcccccccCCcccccccccccccccCCceeeeeeccccccccccccc
Confidence 99998531 5699999999999998888899999999999999999999999999999999974 23349
Q ss_pred cceeEecCccCCCCCccCCC-----CCCCCceeEEEEEEEEcCCCCCCCCcEEEEEECCCCcEEEEeCCceeeeCCcccc
Q 001772 698 INKCITFPEMLDMMPFMTGT-----GDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQVM 772 (1015)
Q Consensus 698 i~~~V~fPe~LDL~~y~~~~-----~~~~~~YeL~gVIvH~G~~~S~~sGHYVayVK~~dg~W~~FNDs~Vt~vs~eeVl 772 (1015)
+++.|.||..|+|.+|+..+ ......|+|.|||+|+|..+ +|||+||.|. .+.||+|||+.|..+++++|+
T Consensus 397 i~~~v~fp~~l~m~p~~~~~~~~~~~~~~~~Y~L~AVV~H~G~~~---SGHY~aY~r~-~~~~~~~dDs~v~~~s~~eVl 472 (492)
T KOG1867|consen 397 IDSYVSFPVLLNMKPYCSSEKLKSQDNPDHLYELRAVVVHHGTVG---SGHYVAYRRQ-SGGWFKCDDSTVTKVSEEEVL 472 (492)
T ss_pred cCcccccchhhcCCccccccccccCCCCCceEEEEEEEEeccCCC---CCceEEEEEe-CCCcEEEcCeEEEEeeHHHhh
Confidence 99999999999999998742 12468999999999999655 9999999999 888999999999999999999
Q ss_pred CCCcEEEEEEEcCCC
Q 001772 773 SEGAYMLFYMRSCPR 787 (1015)
Q Consensus 773 s~~AYILfYeR~~~~ 787 (1015)
+..||+|||.+...+
T Consensus 473 ~~~aylLFY~~~~~~ 487 (492)
T KOG1867|consen 473 SSQAYLLFYTQEQVE 487 (492)
T ss_pred hchhhheehhHHhhh
Confidence 999999999987543
No 28
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-38 Score=363.69 Aligned_cols=306 Identities=33% Similarity=0.515 Sum_probs=243.3
Q ss_pred CCCcccccCCCccchHHHHHHHhcCHHHHHHHHhcccCccc-----------------CCCcchHHHHHHHHHHHHHcCC
Q 001772 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC-----------------CGKDWCLMCELEQHVMMLRESA 537 (1015)
Q Consensus 475 ~~p~GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~~~~~-----------------~~~~~~l~~qL~kL~~~L~ss~ 537 (1015)
..-+||.|+|||||+|||||+|..+|.|++.|......... ..+...+..+|..|..+.....
T Consensus 203 ~~VrGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~~~e~~e~~k 282 (877)
T KOG1873|consen 203 YIVRGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALANLLEMSETTK 282 (877)
T ss_pred ccccccccccchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHhhhhhhhccC
Confidence 33479999999999999999999999999999765433211 1234456667777777777788
Q ss_pred CCCChHHHHHHHHhhcccCCCCCcCcHHHHHHHHHHHHHHHHH--------hhcCCCCC-C-------------CCcccc
Q 001772 538 GPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICL--------ERHGGESK-V-------------DPRLQE 595 (1015)
Q Consensus 538 ~~IsP~~fl~~L~k~~~~F~~g~QQDA~EFL~~LLd~Le~e~l--------~~~~~~~~-~-------------~~~~~~ 595 (1015)
..+.|+.|+..+....++|..++||||||+|+.|||.|..|-. ..++++.. + .+....
T Consensus 283 sv~~Pr~lF~~~C~k~pqF~g~~QhDsHELLR~LLD~l~~EE~~~~kk~Il~~fG~~t~~l~scle~~q~sKvYe~f~~~ 362 (877)
T KOG1873|consen 283 SVITPRTLFGQFCSKAPQFRGYDQHDSHELLRCLLDSLRSEESRRRKKNILSNFGGETSSLVSCLECGQKSKVYEPFKDL 362 (877)
T ss_pred CccCHHHHHHHHHHhCCcccccccccHHHHHHHHHHhhhHHHHHHHHHhHHHhhCccccchhhhhhccchhhcccccccC
Confidence 8999999999999999999999999999999999999976522 22222211 1 111122
Q ss_pred ccccccccceEEEEEEEecCCCCcccceeeeeeeeecccc----------------------------------------
Q 001772 596 TTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYG---------------------------------------- 635 (1015)
Q Consensus 596 ~s~I~~lF~G~l~~~i~C~~Cg~~s~~~E~f~~LsL~I~~---------------------------------------- 635 (1015)
.-++..+|.|-+.+.+.|..|. ++.+.+.|.++++||-.
T Consensus 363 ~~~vp~~~~~~~~s~~~~~~~~-vss~~~s~~~~t~pv~~~~~~~qs~~~s~~~~~tsd~sd~spst~~~t~n~~~~e~~ 441 (877)
T KOG1873|consen 363 SLPVPLSFNGPLTSQIECQACD-VSSVHESFLSETLPVLPSQSLSQSSDSSQHLHLTSDSSDTSPSTEAPTKNLPSSELL 441 (877)
T ss_pred CcccccccCCCcccchhhhccc-eeccchhhcccccccccCccccccCCCcccceeccccccCCccccCcccCccccccc
Confidence 3345578888888888888887 66667777777777620
Q ss_pred --------------------------------------------------------------------------------
Q 001772 636 -------------------------------------------------------------------------------- 635 (1015)
Q Consensus 636 -------------------------------------------------------------------------------- 635 (1015)
T Consensus 442 ~~~t~dn~~~~k~qS~~~~~~S~~~~~~~k~~a~s~n~n~~~~g~~~~~a~~v~~~~~~~~p~gD~e~s~Ad~~lde~n~ 521 (877)
T KOG1873|consen 442 DSLTDDNDQVFKGQSDVAGTNSKEDQNKAKNQAKSQNLNEASQGKDNEKALQVNDRQLDILPLGDGELSKADMSLDEANM 521 (877)
T ss_pred ccccccCchhhccccccccCccccccchhhhhhhhhccccccccccchhhhhhchhhccccccCcccccccccccccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 001772 636 -------------------------------------------------------------------------------- 635 (1015)
Q Consensus 636 -------------------------------------------------------------------------------- 635 (1015)
T Consensus 522 ~~~sss~~~~~~~~~~~s~v~~~s~~ed~n~~~~~~~~~~~a~~Ss~~~d~~~~~~~v~~S~~s~sp~~se~~~vs~n~~ 601 (877)
T KOG1873|consen 522 DEFSSSLEKGIFRGRSTSEVSQASCNEDCNDPEPIQDGSGEASSSSSSVDREHNNHRVARSRFSRSPKKSEVKIVSGNDK 601 (877)
T ss_pred cccccccCCcccCCccHHHhhhhhhhcccCCcccccCCCCcccCCCcccccccccchhhhhhhcCCCcccceeeeccccc
Confidence
Q ss_pred --------------------------------------------------------------------------ccccHH
Q 001772 636 --------------------------------------------------------------------------WVESLE 641 (1015)
Q Consensus 636 --------------------------------------------------------------------------~~~sLe 641 (1015)
...+++
T Consensus 602 ~~g~~g~~~~Sssf~~g~~~g~~~d~d~~~~e~~~~~~T~~~~~~g~~s~~kvs~~~f~a~~S~s~~~~~~~~D~p~Svq 681 (877)
T KOG1873|consen 602 TVGDQGETENSSSFNEGDLNGHASDNDEFLIEIPDDKLTRELPVFGPPSKAKVSEQGFDAFSSISDPEVLDSSDEPCSVQ 681 (877)
T ss_pred cccccceeeechhhhccCccccccchHHhhhcCcccCCCccccccCCCccceeccCCccccccccChhhccCCCCCccHH
Confidence 013899
Q ss_pred HHHHhcCCCCcCCCCCcccccccccc---------------------------ceeeeeeeeeccCceeEEEEEeeec--
Q 001772 642 DALTQFTSPEDLDGENMYKCARCATY---------------------------VRARKQLSIHEAPNILTIVLKRFQE-- 692 (1015)
Q Consensus 642 d~L~~f~~~E~Ldg~Nky~C~kC~~k---------------------------~~A~K~~~I~~lP~iLiIqLkRF~~-- 692 (1015)
.||.+|++.|++.|+|+|.|++|.+. ..|.|++.|..+|+||+|||+||..
T Consensus 682 ~CL~nFT~~E~Ls~~N~~~CEnCtk~~n~~~r~k~~~n~~~sk~s~~es~~~~t~akk~~li~~aPpVltihlKrf~q~~ 761 (877)
T KOG1873|consen 682 RCLKNFTKVEILSGDNKWACENCTKNLNLQRREKRGLNEDNSKYSFNESEYRNTYAKKKVLINKAPPVLTIHLKRFFQDI 761 (877)
T ss_pred HHHHhhhhhhhcccccchhhhhhhccccccchhhccCCCCcccccccchhhhhhhhheeeecccCCceeeehHhhhhhhh
Confidence 99999999999999999999999751 2256788899999999999999963
Q ss_pred -ccccccceeEecCccCCCCCccCCC-----CCCCCceeEEEEEEEEcCCCCCCCCcEEEEEEC----------------
Q 001772 693 -GRYGKINKCITFPEMLDMMPFMTGT-----GDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKD---------------- 750 (1015)
Q Consensus 693 -~~~~Ki~~~V~fPe~LDL~~y~~~~-----~~~~~~YeL~gVIvH~G~~~S~~sGHYVayVK~---------------- 750 (1015)
++..|+++.+.|++.+||.+|+.-. ......|+|+|||.|.|+++ .||||+|+|.
T Consensus 762 ~~~~~k~~~h~~f~E~~dL~~~~~~rc~~l~~~~s~~Yrl~gvvehsgtm~---~ghyvayv~~~t~~~~~~~~~~~~~~ 838 (877)
T KOG1873|consen 762 RGRLSKLNKHVDFKEFEDLLDYMDFRCSHLDEPSSFVYRLAGVVEHSGTMS---YGHYVAYVRGGTFLDLSAPSNSKDFE 838 (877)
T ss_pred hchhhcccccchHHHHHHHHHHhhhhccccCCcchhhhhhccceecccccc---CCcchhhhhccchhhccCccccccch
Confidence 4467999999999999999988621 12456899999999999766 8999999983
Q ss_pred -----CCCcEEEEeCCceeeeCCccccCCCcEEEEEEEc
Q 001772 751 -----MQGTWFRIDDTQVHPVPMSQVMSEGAYMLFYMRS 784 (1015)
Q Consensus 751 -----~dg~W~~FNDs~Vt~vs~eeVls~~AYILfYeR~ 784 (1015)
+.|+||...|+.|.++++++|++..||||||+|.
T Consensus 839 sd~~~~~~~Wy~iSDs~VrevS~d~vLkseAYlLFYERI 877 (877)
T KOG1873|consen 839 SDAGIPSGRWYYISDSIVREVSLDEVLKSEAYLLFYERI 877 (877)
T ss_pred hccCCCCcceEEecchheecccHHHHhhhhhhhhheecC
Confidence 2479999999999999999999999999999994
No 29
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.3e-36 Score=329.00 Aligned_cols=238 Identities=21% Similarity=0.315 Sum_probs=197.5
Q ss_pred ccCCCCCcccccCCCccchHHHHHHHhcCHHHHHHHHhcccCcccCCCcchHHHHHHHHHHHHHcCCCCCChHHHHHHHH
Q 001772 471 VIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMR 550 (1015)
Q Consensus 471 ~~~~~~p~GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~~~~~~~~~~~l~~qL~kL~~~L~ss~~~IsP~~fl~~L~ 550 (1015)
.+..++++||.|+|.+||+||+||+|+++|+||+++ . +....+....|++|+|..||..
T Consensus 9 ~~n~t~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~~-~--~~~~~~~~~~~l~~el~~lfs~------------------ 67 (268)
T cd02672 9 FYNKTNYAGLENHITNSYCNSLLQLLYFIPPFRNFT-A--IILVACPKESCLLCELGYLFST------------------ 67 (268)
T ss_pred ccccccccccccCCccchHHHHHHHHHhcHHHHHHH-H--hhcccCCcCccHHHHHHHHHHH------------------
Confidence 445588999999999999999999999999999983 2 3334466789999999999911
Q ss_pred hhcccCCCCCcCcHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCcccceeeeeeee
Q 001772 551 SISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLT 630 (1015)
Q Consensus 551 k~~~~F~~g~QQDA~EFL~~LLd~Le~e~l~~~~~~~~~~~~~~~~s~I~~lF~G~l~~~i~C~~Cg~~s~~~E~f~~Ls 630 (1015)
=.+-|-++|++.|..+... .+ ..|++++.+.++++.|+
T Consensus 68 ------------~iq~F~~fll~~i~~~~~~--------------------~~----------~~C~~~s~~~~~~~~Ls 105 (268)
T cd02672 68 ------------LIQNFTRFLLETISQDQLG--------------------TP----------FSCGTSRNSVSLLYTLS 105 (268)
T ss_pred ------------HHHHHHHHHHHHHHHHhcc--------------------cC----------CCCCceeeccccceeee
Confidence 1255778888888753211 00 67899999999999999
Q ss_pred eccccc----cccHHHHHHhcCCCCcCCCCCccccccccccceeeeeeeeeccCc----eeEEEEEeeecc---------
Q 001772 631 LEIYGW----VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPN----ILTIVLKRFQEG--------- 693 (1015)
Q Consensus 631 L~I~~~----~~sLed~L~~f~~~E~Ldg~Nky~C~kC~~k~~A~K~~~I~~lP~----iLiIqLkRF~~~--------- 693 (1015)
|+++.. ..+|++||+.|+..|.+. +++|++|++++.+.|+..|.++|+ ||+|||+||...
T Consensus 106 Lpip~~~~~~~~sl~~cL~~~~~~E~~~---~~~C~~C~~~~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~~~~~~ 182 (268)
T cd02672 106 LPLGSTKTSKESTFLQLLKRSLDLEKVT---KAWCDTCCKYQPLEQTTSIRHLPDILLLVLVINLSVTNGEFDDINVVLP 182 (268)
T ss_pred eecCccccccCCCHHHHHHHHhhhhhcc---cccccccCcccccEEEEEeecCCCcccceEEEEEeccChhhcccCccee
Confidence 999852 469999999999988654 499999999999999999999999 999999999742
Q ss_pred cccccceeEecCccCCCCCccCCCCCCCCceeEEEEEEEEcCCCCCCCCcEEEEEECC-----CCcEEEEeCCceeeeCC
Q 001772 694 RYGKINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM-----QGTWFRIDDTQVHPVPM 768 (1015)
Q Consensus 694 ~~~Ki~~~V~fPe~LDL~~y~~~~~~~~~~YeL~gVIvH~G~~~S~~sGHYVayVK~~-----dg~W~~FNDs~Vt~vs~ 768 (1015)
...|+...|.||..+++..+...+......|+|+|||+|.|. +..+||||||||.. +++||+|||..|+++++
T Consensus 183 ~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~Y~L~gvV~hig~--~~~~GHyva~vk~~~~~~~~~~WylFND~~V~~vs~ 260 (268)
T cd02672 183 SGKVMQNKVSPKAIDHDKLVKNRGQESIYKYELVGYVCEIND--SSRGQHNVVFVIKVNEESTHGRWYLFNDFLVTPVSE 260 (268)
T ss_pred EEEecCCeecccccccchhhhccCCCCCceEEEEEEEEEecC--CCCCCcEEEEEEccCCCCCCCcEEEecCeEEEEcCc
Confidence 125788899999988777666655556789999999999997 34689999999985 57899999999999976
Q ss_pred ccccCCCcEEEEEE
Q 001772 769 SQVMSEGAYMLFYM 782 (1015)
Q Consensus 769 eeVls~~AYILfYe 782 (1015)
.||||||+
T Consensus 261 ------~aYiLfY~ 268 (268)
T cd02672 261 ------LAYILLYQ 268 (268)
T ss_pred ------hheeeecC
Confidence 79999995
No 30
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-38 Score=358.11 Aligned_cols=274 Identities=29% Similarity=0.479 Sum_probs=226.7
Q ss_pred CCCcccccCCCccchHHHHHHHhcCHHHHHHHHhcccCcccCCCcchHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhcc
Q 001772 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISC 554 (1015)
Q Consensus 475 ~~p~GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~~~~~~~~~~~l~~qL~kL~~~L~ss~~~IsP~~fl~~L~k~~~ 554 (1015)
.+++||+|..-+||+|+.+|+|+..|.|++.+... ....+...++.+.++ +.
T Consensus 85 ~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts--------------------------~~~~~et~dlt~sfg--w~ 136 (1203)
T KOG4598|consen 85 HRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTS--------------------------ENDSLETKDLTQSFG--WT 136 (1203)
T ss_pred cceEeehhhHHHHHHHHHhhhhccChhhhhhhhCC--------------------------CcccccchhhHhhcC--CC
Confidence 67899999999999999999999999999876521 112233344433321 11
Q ss_pred cCCCCCcCcHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCcccceeeeeeeeeccc
Q 001772 555 QIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIY 634 (1015)
Q Consensus 555 ~F~~g~QQDA~EFL~~LLd~Le~e~l~~~~~~~~~~~~~~~~s~I~~lF~G~l~~~i~C~~Cg~~s~~~E~f~~LsL~I~ 634 (1015)
.-..++|+|.||+.+.++|.|+..+ .+ .+...+|++++.|.+...+.|.+|+.++.+.+.|++|.|++.
T Consensus 137 s~ea~~qhdiqelcr~mfdalehk~----k~-------t~~~~li~~ly~g~m~d~v~cl~c~~e~~~~d~fld~pl~v~ 205 (1203)
T KOG4598|consen 137 SNEAYDQHDVQELCRLMFDALEHKW----KG-------TEHEKLIQDLYRGTMEDFVACLKCGRESVKTDYFLDLPLAVK 205 (1203)
T ss_pred cchhhhhhhHHHHHHHHHHHHHhhh----cC-------chHHHHHHHHhcchHHHHHHHHHcCccccccceeeccccccc
Confidence 1123689999999999999998643 11 123468999999999999999999999999999999999997
Q ss_pred cc-----cccHHHHHHhcCCCCcCCCCCccccccccccceeeeeeeeeccCceeEEEEEeeecc----cccccceeEecC
Q 001772 635 GW-----VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEG----RYGKINKCITFP 705 (1015)
Q Consensus 635 ~~-----~~sLed~L~~f~~~E~Ldg~Nky~C~kC~~k~~A~K~~~I~~lP~iLiIqLkRF~~~----~~~Ki~~~V~fP 705 (1015)
.- -.+++++|..|..+|.++|.|+|.|++|++++.|.|.++|+.||-+|+||||||+++ .+.|++++|.||
T Consensus 206 pfg~~~ay~sieeal~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~tfp 285 (1203)
T KOG4598|consen 206 PFGAIHAYKSVEEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFP 285 (1203)
T ss_pred CCcchhhhhhHHHHHHHhcChhhcCCccHHHHhhhhhhhhhhcCceeeccceeeEEeeecccccchheeeeeecccccCc
Confidence 31 258999999999999999999999999999999999999999999999999999643 347999999999
Q ss_pred ccCCCCCccCCCC------------------------------------------------------------------C
Q 001772 706 EMLDMMPFMTGTG------------------------------------------------------------------D 719 (1015)
Q Consensus 706 e~LDL~~y~~~~~------------------------------------------------------------------~ 719 (1015)
+.|||..|+.... .
T Consensus 286 ~~l~ln~~in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~n~~~g~~~~~~~~~~~~~~s 365 (1203)
T KOG4598|consen 286 DVLDLNDYVNKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQSPNRYQGSENVCVGQPIDHAAVDDIVKTS 365 (1203)
T ss_pred ccccHHHhhhhccCCcchhHhhhcccccccccccccccCCCCcccCcccccCcccccCccccccCCcCchhhhhhHhhcC
Confidence 9999998865210 1
Q ss_pred CCCceeEEEEEEEEcCCCCCCCCcEEEEEECC-CCcEEEEeCCceeeeCCccccC-------------CCcEEEEEEEcC
Q 001772 720 TPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM-QGTWFRIDDTQVHPVPMSQVMS-------------EGAYMLFYMRSC 785 (1015)
Q Consensus 720 ~~~~YeL~gVIvH~G~~~S~~sGHYVayVK~~-dg~W~~FNDs~Vt~vs~eeVls-------------~~AYILfYeR~~ 785 (1015)
++..|+|++|.+|.|+ +.+|||++|||+. +++||.|||.+|+-++..++.. .+||||+|+|.+
T Consensus 366 g~~~yelf~imihsg~---a~gghy~ayik~~d~~~w~~fnd~~v~~~t~~~i~~sfgg~~~~~~~s~tnaymlmyr~id 442 (1203)
T KOG4598|consen 366 GDNVYELFSVMVHSGN---AAGGHYFAYIKNLDQDRWYVFNDTRVDFATPLEIEKSFGGHPSGWNQSNTNAYMLMYRRID 442 (1203)
T ss_pred CccHHHhhhhheecCC---CCCceeeeeecccCcCceEEecCccccccCHHHHHHhhCCCCCCccccCcchhhhhhhhcC
Confidence 5678999999999994 5589999999985 6799999999999998777753 369999999999
Q ss_pred CCCCc
Q 001772 786 PRPRR 790 (1015)
Q Consensus 786 ~~~~~ 790 (1015)
++...
T Consensus 443 ~krn~ 447 (1203)
T KOG4598|consen 443 PKRNA 447 (1203)
T ss_pred ccccc
Confidence 87653
No 31
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-36 Score=379.50 Aligned_cols=348 Identities=27% Similarity=0.370 Sum_probs=278.7
Q ss_pred CCceeeeccccccCcccccccccchhhhhHhhhcCceeeecchhhhhh-hhhhccCCCCC-cccccCCCccchHHHHHHH
Q 001772 419 SNVVSKMGIMKMMGLRKSTKLRQDSSELWHDQHRKLKMLFPYEEFLKL-FQYEVIDLLSP-RGLLNCGNSCYANAVLQCL 496 (1015)
Q Consensus 419 ~~hL~~~GI~k~~nl~~~~Kteks~~EL~~d~n~~~~~~~~~E~~~~l-~~~~~~~~~~p-~GL~NlGNTCYlNSVLQ~L 496 (1015)
..--.-||.+.+....+..+.+.+.++... .++......+....+ ..+......+. +||.|+||||||||+||+|
T Consensus 113 ~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~v~~~~~~~~~~d~k~~tg~~vGL~N~GaTCY~NsllQ~l 189 (1093)
T KOG1863|consen 113 TADERDWGFSCFSTSSDIRKPEDGYVRNGL---EKLEKRVRVEQPTSLMNPYDSKRLTGFPVGLKNLGATCYVNSLLQVL 189 (1093)
T ss_pred cccccchhhccchhHhhccCcccccccccc---eeeeeeeeeecCCcccchhhhhhcCCCCccccCCCceeeehHHHHHH
Confidence 334445777777777777777766655432 122222222222222 12222222555 9999999999999999999
Q ss_pred hcCHHHHHHHHhcccCcccCCCcchHHHHHHHHHHHHHcCCC-CCChHHHHHHHHhhcccCCCCCcCcHHHHHHHHHHHH
Q 001772 497 TCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAG-PLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASM 575 (1015)
Q Consensus 497 ~sip~fr~~Ll~~~~~~~~~~~~~~l~~qL~kL~~~L~ss~~-~IsP~~fl~~L~k~~~~F~~g~QQDA~EFL~~LLd~L 575 (1015)
|.++.||+.+...........+...++.+|+.||..|+.+.. ++.+..+...+.... ....+|||++||++.|+|.|
T Consensus 190 f~~~~FR~~Vy~~~~~~~~~~~~~~v~~~lq~lF~~LQ~s~~k~Vdt~~~~~~~~~~~--~~~~~QqDvqEf~~~l~d~L 267 (1093)
T KOG1863|consen 190 FLIPEFRRAVYSIPPFTGHEDPRRSIPLALQRLFYELQMSKRKYVDTSELTKSLGWDS--NDSFEQQDVQEFLTKLLDWL 267 (1093)
T ss_pred HccHHHHHHHhcCCCCCCcccccchHHHHHHHHHHHHhhcCCCCcCchhhhhhhhccc--ccHHhhhhHHHHHHHHHHHH
Confidence 999999999987654334445667799999999999998777 999999998886554 45579999999999999999
Q ss_pred HHHHHhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCcccceeeeeeeeeccccccccHHHHHHhcCCCCcCCC
Q 001772 576 QSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDG 655 (1015)
Q Consensus 576 e~e~l~~~~~~~~~~~~~~~~s~I~~lF~G~l~~~i~C~~Cg~~s~~~E~f~~LsL~I~~~~~sLed~L~~f~~~E~Ldg 655 (1015)
+..+.... ..+.|.++|.|.+...+.|..|+..+.+.|.|+++.|++.+ ..+|.++|..|+..|+++|
T Consensus 268 E~~~~~~~-----------~~~~l~~lf~g~~~~~i~c~~~~~~s~r~e~f~d~ql~~~g-~~nl~~sf~~y~~~E~l~g 335 (1093)
T KOG1863|consen 268 EDSMIDAK-----------VENTLQDLFTGKMKSVIKCIDVDFESSRSESFLDLQLNGKG-VKNLEDSLHLYFEAEILLG 335 (1093)
T ss_pred Hhhccchh-----------hhhhhhhhhcCCcceEEEEEeeeeeccccccccCccccccc-hhhHHHHHHHhhhHHHhcC
Confidence 97542221 24578999999999999999999999999999999999998 6789999999999999999
Q ss_pred CCccccccccccceeeeeeeeeccCceeEEEEEeeec----ccccccceeEecCccCCCCCccCC---C-CCCCCceeEE
Q 001772 656 ENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQE----GRYGKINKCITFPEMLDMMPFMTG---T-GDTPPLYMLY 727 (1015)
Q Consensus 656 ~Nky~C~kC~~k~~A~K~~~I~~lP~iLiIqLkRF~~----~~~~Ki~~~V~fPe~LDL~~y~~~---~-~~~~~~YeL~ 727 (1015)
+|+ +|..|...+.|.+...+.++|++|.|+|+||.+ +...|+++.+.||..|+|.+|+.. . ......|.|+
T Consensus 336 dn~-~~~~~~~~~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~d~~~fp~~i~~d~~~~~~~~~~~~~~~~y~l~ 414 (1093)
T KOG1863|consen 336 DNK-YDAECHGLQDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIKINDKFEFPLIIDMDRYLSRFKAEESERSAVYSLH 414 (1093)
T ss_pred Ccc-ccccccchhhhhcceeeccCCchhhhhhhheeeeccCCceeehhhccCCccccccchhccccchhhhhccceeccc
Confidence 999 899999999999999999999999999999975 345799999999999999999773 1 1233599999
Q ss_pred EEEEEEcCCCCCCCCcEEEEEECC-CCcEEEEeCCceeeeCCccccCC----------------CcEEEEEEEcCCC
Q 001772 728 SVVVHLDTQNASFSGHYVSYIKDM-QGTWFRIDDTQVHPVPMSQVMSE----------------GAYMLFYMRSCPR 787 (1015)
Q Consensus 728 gVIvH~G~~~S~~sGHYVayVK~~-dg~W~~FNDs~Vt~vs~eeVls~----------------~AYILfYeR~~~~ 787 (1015)
||++|.| ..++|||++|++.. .++|++|||..|..++..+++.. .||||+|.|.+..
T Consensus 415 ~v~vh~g---~~~~ghy~~~i~~~~~~~w~kfdd~~v~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~lv~~~~s~~ 488 (1093)
T KOG1863|consen 415 AVLVHSG---DAHSGHYVAYINPKLDGKWVKFDDLVVTVVSEKEALEQNYGTEEIELSSTADFKNAYMLVYIRDSCE 488 (1093)
T ss_pred hhhcccc---cccCccceeeecchhhccceeccCceeeeccHHHHHHhhCCCcchhhhcccccCCcceEEEEecCcH
Confidence 9999976 56699999999943 79999999999999987666531 2899999998764
No 32
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-34 Score=357.32 Aligned_cols=306 Identities=28% Similarity=0.479 Sum_probs=264.5
Q ss_pred CCCcccccCCCccchHHHHHHHhcCHHHHHHHHhcccCc-----ccCCCcchHHHHHHHHHHHHHcCCC-CCChHHHHHH
Q 001772 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSS-----ACCGKDWCLMCELEQHVMMLRESAG-PLSPGRILSH 548 (1015)
Q Consensus 475 ~~p~GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~~~-----~~~~~~~~l~~qL~kL~~~L~ss~~-~IsP~~fl~~ 548 (1015)
.|.+||.|+|||||||+.+|||.+.+.+++|++...... ........+...+..+...++.... .+.|..+...
T Consensus 244 ~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~~~~v~~~~~~~~ 323 (842)
T KOG1870|consen 244 RGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGNKSAVAPTSFRTS 323 (842)
T ss_pred ccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCCccccCchhhhhh
Confidence 778999999999999999999999999999997655443 1123355677778888888887665 7999999999
Q ss_pred HHhhcccCCCCCcCcHHHHHHHHHHHHHHHHHhhcCCCC--C----------------CCCccccccccccccceEEEEE
Q 001772 549 MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGES--K----------------VDPRLQETTFIQHTFGGRLWSK 610 (1015)
Q Consensus 549 L~k~~~~F~~g~QQDA~EFL~~LLd~Le~e~l~~~~~~~--~----------------~~~~~~~~s~I~~lF~G~l~~~ 610 (1015)
+....+.|.++.|||.+||+-+|+|-+|+.+........ . ........++|.++|.|.+...
T Consensus 324 ~~~~a~~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~~~~~~~~~~~s~i~d~~~~~~~S~ 403 (842)
T KOG1870|consen 324 LASFASEFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEVWDYHLKRNRSVIVDLFDGTYKST 403 (842)
T ss_pred hhhccccccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHHHHHhhhhhccceeeeeecceeccc
Confidence 999999999999999999999999999998755432200 0 0011235578999999999999
Q ss_pred EEecCCCCcccceeeeeeeeecccc-------------------------------------------------------
Q 001772 611 VKCLRCSHESERYENIMDLTLEIYG------------------------------------------------------- 635 (1015)
Q Consensus 611 i~C~~Cg~~s~~~E~f~~LsL~I~~------------------------------------------------------- 635 (1015)
+.|..|++++.++++|..|+|+++.
T Consensus 404 ~~c~~C~~~svt~d~f~~Lslp~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~i 483 (842)
T KOG1870|consen 404 LQCPTCGKVSVTFDPFGYLSLPLPGKEIQKLEVTVPHGDGFRKPGALGVSVAKNGRIRDLLEYLSRTVGLLSWELKPVEI 483 (842)
T ss_pred ccCccCCCceEEeeccccccccCCCCcccceeEEEecCCCCCChhheeeeccccchHHHHHHHHHHHhccchhhccccee
Confidence 9999999999999999999999861
Q ss_pred --------------------------------------------------------------------------------
Q 001772 636 -------------------------------------------------------------------------------- 635 (1015)
Q Consensus 636 -------------------------------------------------------------------------------- 635 (1015)
T Consensus 484 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~ 563 (842)
T KOG1870|consen 484 LFDCFNKIFAADELKLDSIYSDEELFDYELGVLKVQGSIYAIIVVRFRSRLPRSKGIRSHVSSKLFGLPLLVSVLSGAQS 563 (842)
T ss_pred ccchhhhhhccCccccccccCCcceEEeecccccccccceEEEEEeeccccccccCcccCCCccccCCcceeeccCCCcc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 001772 636 -------------------------------------------------------------------------------- 635 (1015)
Q Consensus 636 -------------------------------------------------------------------------------- 635 (1015)
T Consensus 564 t~~~l~~~~~~~~s~~~~~~~~~v~~~~~~~~~~~~~e~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (842)
T KOG1870|consen 564 TEEDLLSVICHRTSRYSREPPLNVGYGVDDQSLKEVSEQSAESSSSVSRDPSEDDNSDQDLSLECLSEESALRFFQSLES 643 (842)
T ss_pred cccchhhHHhhcccccCCcCccccccCCCcccccccccccccccccccCCChhHhccccccchhhccCcccccccccccc
Confidence
Q ss_pred --------------------------------------------------ccccHHHHHHhcCCCCcCCCCCcccccccc
Q 001772 636 --------------------------------------------------WVESLEDALTQFTSPEDLDGENMYKCARCA 665 (1015)
Q Consensus 636 --------------------------------------------------~~~sLed~L~~f~~~E~Ldg~Nky~C~kC~ 665 (1015)
...+|++||+.|+.+|.|..+++|+|+.|+
T Consensus 644 ~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cl~~F~~~E~L~~~~~w~C~~Ck 723 (842)
T KOG1870|consen 644 RNKSDSEFEPGSTSIAVDWSPSAKYKYSSSLVSQPPEVEPRGASRSKGSPAPNSLESCLELFSEPETLGKDDRWYCPQCK 723 (842)
T ss_pred cccccccccCCCceeecccChhhccccccccccccccccccccccccCCCCcccHHHHHHhhcchhcCCccccccChHHH
Confidence 012899999999999999999999999999
Q ss_pred ccceeeeeeeeeccCceeEEEEEeeeccc--ccccceeEecC-ccCCCCCccCCCCCCCCceeEEEEEEEEcCCCCCCCC
Q 001772 666 TYVRARKQLSIHEAPNILTIVLKRFQEGR--YGKINKCITFP-EMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSG 742 (1015)
Q Consensus 666 ~k~~A~K~~~I~~lP~iLiIqLkRF~~~~--~~Ki~~~V~fP-e~LDL~~y~~~~~~~~~~YeL~gVIvH~G~~~S~~sG 742 (1015)
++..|.|++.++++|+|||||||||++.+ ..|+...|+|| ..||+++|+..... ..|+|+||++|+|.++ +|
T Consensus 724 e~~~A~Kk~~lwrlPeiLiihLKrF~~~r~~~~k~~~~v~fPi~~ld~s~~~~~~~~--~~Y~l~av~nHyG~l~---~G 798 (842)
T KOG1870|consen 724 ELRQATKKLDLWRLPEILIIHLKRFQYSRESSSKVKTKVEFPLGSLDLSEFVVNKEQ--VLYDLYAVGNHYGQLS---GG 798 (842)
T ss_pred HHHHHhhhhhhhhCCceEEEEeecceeechhhhhhCccccCCCcCCCcchhhccCcc--ceeeeeeeecccCCcC---Cc
Confidence 99999999999999999999999998643 37999999999 68999999886654 8999999999999766 89
Q ss_pred cEEEEEEC-CCCcEEEEeCCceeeeCCccccCCCcEEEEEEEcC
Q 001772 743 HYVSYIKD-MQGTWFRIDDTQVHPVPMSQVMSEGAYMLFYMRSC 785 (1015)
Q Consensus 743 HYVayVK~-~dg~W~~FNDs~Vt~vs~eeVls~~AYILfYeR~~ 785 (1015)
||+||.|. .+++||.|||+.|.+++++++.++.||+|||+|++
T Consensus 799 HYta~~k~~~~~~w~~fdDs~v~~~~~~~i~t~~aY~Lfy~r~~ 842 (842)
T KOG1870|consen 799 HYTAYAKNVGDGKWYLFDDSSVSEVDEDEIDTEAAYVLFYRRLD 842 (842)
T ss_pred chhhhhhcCCCCceEEeccccCCCCChhhcccccceEEEEEecC
Confidence 99999998 58999999999999999999999999999999974
No 33
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=100.00 E-value=1.8e-32 Score=304.05 Aligned_cols=277 Identities=25% Similarity=0.366 Sum_probs=235.7
Q ss_pred cccccCCCccchHHHHHHHhcCHHHHHHHHhcccCcccCCCcchHHHHHHHHHHHHH-cC-CCCCChHHHHHHHHhhccc
Q 001772 478 RGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLR-ES-AGPLSPGRILSHMRSISCQ 555 (1015)
Q Consensus 478 ~GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~~~~~~~~~~~l~~qL~kL~~~L~-ss-~~~IsP~~fl~~L~k~~~~ 555 (1015)
.||.|.+++||+||+||+|+++|++++.++.+. .+....||.|+|..||++|. .. +..+.+..|++.++.....
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~----~c~~e~cL~cELgfLf~ml~~~~~g~~cq~sNflr~l~~~~~a 76 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL----ECPKEFCLLCELGFLFDMLDSKAKGINCQASNFLRALSWIPEA 76 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc----CCCccccHHHHHHHHHHHhhhhcCCCcChHHHHHHHHhcCHHH
Confidence 499999999999999999999999999999876 26788999999999999998 54 4568899999999888766
Q ss_pred CCCCCcCcHHHHHHHHHHHHHHHHHhhcCCC--CCCCCccccccccccccceEEEEEEEecCCCCcccceeeeeeeeecc
Q 001772 556 IGDGSQEDAHEFLRLLVASMQSICLERHGGE--SKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEI 633 (1015)
Q Consensus 556 F~~g~QQDA~EFL~~LLd~Le~e~l~~~~~~--~~~~~~~~~~s~I~~lF~G~l~~~i~C~~Cg~~s~~~E~f~~LsL~I 633 (1015)
...+.|+|+++|+++|+++|+.+++...... ............|.++|+......++|..|+.++.+.+....+.|..
T Consensus 77 ~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~c~~c~~~~~~~~~~~~~~l~y 156 (295)
T PF13423_consen 77 AALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHTSENSSSSPESSISQLFGTSFETTIRCTSCGHESVKESSTLVLDLPY 156 (295)
T ss_pred HhcchhHHHHHHHHHHHHHHhHHHHhcCcccccccccccCCCcchHHHHhCcceeeeecccccCCeEEeecceeeeeccC
Confidence 6777899999999999999999875543211 11122234456799999999999999999999999998888888877
Q ss_pred cc--ccccHHHHHHhcCCCCcCCCCCccccccccccceeeeeeeeeccCceeEEEEEeeeccc--ccccceeEecCccCC
Q 001772 634 YG--WVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGR--YGKINKCITFPEMLD 709 (1015)
Q Consensus 634 ~~--~~~sLed~L~~f~~~E~Ldg~Nky~C~kC~~k~~A~K~~~I~~lP~iLiIqLkRF~~~~--~~Ki~~~V~fPe~LD 709 (1015)
+. ...++.++|+.++..|.... .+|++|++++....+..|.++|+||.|.++|+.... ..|+...+.+|..++
T Consensus 157 p~~~~~~tf~~~Le~sl~~e~~~~---a~C~~C~~~~~~~~~r~i~~LPpVL~In~~~~~~~~~w~~~~~~~~~ip~~i~ 233 (295)
T PF13423_consen 157 PPSNSNVTFSQVLEHSLNREQQTR---AWCEKCNKYQPTEQRRTIRSLPPVLSINLNRYSEEEFWPKKNWLKIWIPPSIN 233 (295)
T ss_pred CCCCccchHHHHHHHHHhhccccc---ccccccccccceeeeeeccCCCcEEEEEccCCCcccccccccCCceecceeee
Confidence 75 35799999999999999886 899999999999999999999999999999986442 368888999999999
Q ss_pred CCCccCCC-------CCCCCceeEEEEEEEEcCCCCCCCCcEEEEEECC---CCcEEEEeCCce
Q 001772 710 MMPFMTGT-------GDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM---QGTWFRIDDTQV 763 (1015)
Q Consensus 710 L~~y~~~~-------~~~~~~YeL~gVIvH~G~~~S~~sGHYVayVK~~---dg~W~~FNDs~V 763 (1015)
+..++..+ ..+..+|+|.|+|+|.|. +..+||||+|||.. +.+||+|||..|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~Y~L~~~V~~i~~--~~~~~HlVs~vrv~~~~~~~W~lFNDflV 295 (295)
T PF13423_consen 234 LPHFIADDSQSDLEGESGIFKYELRSMVCHIGD--SIESGHLVSLVRVGPSDDSQWYLFNDFLV 295 (295)
T ss_pred ccccccccccccccCCCCceEEEEEEEEEEecC--CCCCCceEEEEEcCCCCCCcEEEECcEeC
Confidence 98887543 345679999999999998 77899999999985 469999999765
No 34
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=1.6e-31 Score=287.70 Aligned_cols=195 Identities=26% Similarity=0.359 Sum_probs=152.7
Q ss_pred ccccCCC-ccchHHHHHHHhcCHHHHHHHHhcccCcccCCCcchHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhcccCC
Q 001772 479 GLLNCGN-SCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIG 557 (1015)
Q Consensus 479 GL~NlGN-TCYlNSVLQ~L~sip~fr~~Ll~~~~~~~~~~~~~~l~~qL~kL~~~L~ss~~~IsP~~fl~~L~k~~~~F~ 557 (1015)
|+.|.+| +|||.|+|-+||+
T Consensus 1 g~~~~~~~~cy~d~~~~~~f~----------------------------------------------------------- 21 (241)
T cd02670 1 GAQNHCNVSCYLDALLFAMFA----------------------------------------------------------- 21 (241)
T ss_pred CCccccCceeehHHHHHHHHH-----------------------------------------------------------
Confidence 8899999 9999999999985
Q ss_pred CCCcCcHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccccccccce-EEEEEEEecCCCCcccceeeeeeeeecccc-
Q 001772 558 DGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGG-RLWSKVKCLRCSHESERYENIMDLTLEIYG- 635 (1015)
Q Consensus 558 ~g~QQDA~EFL~~LLd~Le~e~l~~~~~~~~~~~~~~~~s~I~~lF~G-~l~~~i~C~~Cg~~s~~~E~f~~LsL~I~~- 635 (1015)
+|||+.|||.+|+++|+.-++.. .-++|.| +..+... +...|.++.|.++...
T Consensus 22 --~q~D~~e~~~~l~~~~~~~~~~~----------------~~~~~~~g~~~~~~~-------~~~~e~~l~l~ip~~~~ 76 (241)
T cd02670 22 --EQQDPEEFFNFITDKLLMPLLEP----------------KVDIIHGGKKDQDDD-------KLVNERLLQIPVPDDDD 76 (241)
T ss_pred --HhcCHHHHHHHHHHHHhhhhhhH----------------HHHHHhcCccccccc-------cccccceEEeecccCCC
Confidence 79999999999999997633221 1233333 2221111 2335667777776643
Q ss_pred -ccccHHHHHHhcCCCCcCCCCCccccccccccceeeeeeeeeccCceeEEEEEeeeccc--ccccceeEecCccCCCCC
Q 001772 636 -WVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGR--YGKINKCITFPEMLDMMP 712 (1015)
Q Consensus 636 -~~~sLed~L~~f~~~E~Ldg~Nky~C~kC~~k~~A~K~~~I~~lP~iLiIqLkRF~~~~--~~Ki~~~V~fPe~LDL~~ 712 (1015)
...+|++||+.|+..|+ |.++|++|+||||||.... ..|+++.|.||..|||.+
T Consensus 77 ~~~~tLedcLe~~~~~e~-----------------------i~~lP~vLiIhLKRF~~~~~~~~Kl~~~I~fP~~Ldl~~ 133 (241)
T cd02670 77 GGGITLEQCLEQYFNNSV-----------------------FAKAPSCLIICLKRYGKTEGKAQKMFKKILIPDEIDIPD 133 (241)
T ss_pred CCcCCHHHHHHHHhchhh-----------------------hhhCCCeEEEEEEccccCCCcceeCCcEECCCCcCCchh
Confidence 36799999999998775 8899999999999998643 579999999999999999
Q ss_pred ccCCCC----------------------CCCCceeEEEEEEEEcCCCCCCCCcEEEEEECCC------------CcEEEE
Q 001772 713 FMTGTG----------------------DTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQ------------GTWFRI 758 (1015)
Q Consensus 713 y~~~~~----------------------~~~~~YeL~gVIvH~G~~~S~~sGHYVayVK~~d------------g~W~~F 758 (1015)
|+.... .....|+|+|||+|.|. +.++||||||||... +.|++|
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~--s~~sGHYva~vr~~~~~~~~~~~~~~~~~W~~F 211 (241)
T cd02670 134 FVADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGT--SLETGHYVAFVRYGSYSLTETDNEAYNAQWVFF 211 (241)
T ss_pred hcccccccccccccccccccccccccCCCCCeEEEEEEEEEeCCC--CCCCcCeEEEEECCcccccccccCCCCCeEEEe
Confidence 986431 23468999999999997 677999999999864 799999
Q ss_pred eCCceeeeCCc------cccCCCcEEEEEE
Q 001772 759 DDTQVHPVPMS------QVMSEGAYMLFYM 782 (1015)
Q Consensus 759 NDs~Vt~vs~e------eVls~~AYILfYe 782 (1015)
||..|+.+... .+..+.||||||+
T Consensus 212 DD~~v~~~~~~~~~~~~~~~~~~aYmLFYq 241 (241)
T cd02670 212 DDMADRDGVSNGFNIPAARLLEDPYMLFYQ 241 (241)
T ss_pred cCcccccccccccccchhcccCCceEEEeC
Confidence 99988776432 4567899999996
No 35
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4e-31 Score=313.47 Aligned_cols=309 Identities=28% Similarity=0.461 Sum_probs=246.7
Q ss_pred CCCcccccCCCccchH--HHHHHHhcCHHHHHHHHhcccCccc-CCCcchHHHHHHHHHHHHH---cCCCCCChHHHHHH
Q 001772 475 LSPRGLLNCGNSCYAN--AVLQCLTCTKPLVIYLLRRSHSSAC-CGKDWCLMCELEQHVMMLR---ESAGPLSPGRILSH 548 (1015)
Q Consensus 475 ~~p~GL~NlGNTCYlN--SVLQ~L~sip~fr~~Ll~~~~~~~~-~~~~~~l~~qL~kL~~~L~---ss~~~IsP~~fl~~ 548 (1015)
....|..|.+++|+.| +|.|.+..+..++...+........ ......++..+..++.... .....+.|..+...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~p~~~~~~ 309 (587)
T KOG1864|consen 230 ERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSLKRSYIIKEELLTCLLDLFSSISSRKKLVGRISPTRFISD 309 (587)
T ss_pred ccccCccccCccccccchhhHHHHHhhhhhcccccchhhcccchhhhhHHHHHHhhhhccchhhhcccccccCcchhhhh
Confidence 4457999999999999 9999999998888544332211110 0112223333333333222 23456899999999
Q ss_pred HHhhcccCCCCCcCcHHHHHHHHHHHHHHHHHhhcCCCCC-CCC--------c------------cccccccccccceEE
Q 001772 549 MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESK-VDP--------R------------LQETTFIQHTFGGRL 607 (1015)
Q Consensus 549 L~k~~~~F~~g~QQDA~EFL~~LLd~Le~e~l~~~~~~~~-~~~--------~------------~~~~s~I~~lF~G~l 607 (1015)
+++.+..|..+.||||+||+.++++.+++.......+... ..+ . .....++.++|.|.+
T Consensus 310 ~~~~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~v~~lf~g~l 389 (587)
T KOG1864|consen 310 LIKENELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNKGHHKSLRENWVSKLFQGIL 389 (587)
T ss_pred hhhcCCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccccccccccccccccchhHHHHhhcCee
Confidence 9999999999999999999999999998865444321111 110 0 114578999999999
Q ss_pred EEEEEecCCCCcccceeeeeeeeecccc-ccccHHHHHHhcCCCCcCCCCCccccccccccceeeeeeeeeccCceeEEE
Q 001772 608 WSKVKCLRCSHESERYENIMDLTLEIYG-WVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIV 686 (1015)
Q Consensus 608 ~~~i~C~~Cg~~s~~~E~f~~LsL~I~~-~~~sLed~L~~f~~~E~Ldg~Nky~C~kC~~k~~A~K~~~I~~lP~iLiIq 686 (1015)
..+.+|..|+..+.+.+.|.++.++++. ...++..+|..|..+|.+.|+|+|.|++|...+.|.+.+.++.+|.+|+||
T Consensus 390 ~~et~Clsc~t~T~~de~f~D~~~~v~~de~~si~~~l~~~~~~e~l~g~nky~c~~c~s~qeae~~l~~k~lp~~L~l~ 469 (587)
T KOG1864|consen 390 TNETRCLSCETITSRDEGFLDLSVAVEIDENTSITNLLKSFSSTETLSGENKYSCENCCSLQEAERRLKIKKLPYVLTLH 469 (587)
T ss_pred eeeeeeccccccccccccccccceeccccccccHHHHHHHhcchhhccCCCcccccccCchhhHHHhccccCCcceeeee
Confidence 9999999999999999999999999984 468999999999999999999999999999999999999999999999999
Q ss_pred EEeeeccc----ccccceeEecCccCCCCCccCCCCCCCCceeEEEEEEEEcCCCCCCCCcEEEEEECCCCcEEEEeCCc
Q 001772 687 LKRFQEGR----YGKINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQ 762 (1015)
Q Consensus 687 LkRF~~~~----~~Ki~~~V~fPe~LDL~~y~~~~~~~~~~YeL~gVIvH~G~~~S~~sGHYVayVK~~dg~W~~FNDs~ 762 (1015)
||||.++. ..|+...|.+|.+|.+.............|.|+|||||.|. +.+.|||+||+|...-.|++|||+.
T Consensus 470 Lkrfk~~~~~~~~~kl~~~v~~plel~l~~~~~~~~~~~~~Y~L~avVvH~G~--~p~~GHYia~~r~~~~nWl~fdD~~ 547 (587)
T KOG1864|consen 470 LKRFKYSEQQNRYTKLLYRVVFPLELRLKDTLKDDNNPDRKYDLVAVVVHLGS--TPNRGHYVAYVKSLDFNWLLFDDDN 547 (587)
T ss_pred hhccccccccccccccccccccccceeeccccccccCccceeeEEEEEEeccC--CCCCcceEEEEeeCCCCceeccccc
Confidence 99997652 36899999999999987665544444579999999999998 8899999999998544599999999
Q ss_pred eeeeCCccccC---CCcEEEEEEEcC
Q 001772 763 VHPVPMSQVMS---EGAYMLFYMRSC 785 (1015)
Q Consensus 763 Vt~vs~eeVls---~~AYILfYeR~~ 785 (1015)
|..++.+.|.. ..+|+++|.+.-
T Consensus 548 V~~~s~~~v~~~~~~s~~~~~~~~~~ 573 (587)
T KOG1864|consen 548 VEPISEEPVSEFTGSSGDTLFYYVQV 573 (587)
T ss_pred ccccCcchhhhccCCCccceeeeEEe
Confidence 99999888764 468888887764
No 36
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=6.5e-28 Score=271.17 Aligned_cols=295 Identities=24% Similarity=0.256 Sum_probs=232.2
Q ss_pred CCCcccccCCCccchHHHHHHHhcCHHHHHHHHhcccCcccC---CCcchHHHHHHHHHHHHHcCCCCCChHHHHHHHHh
Q 001772 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACC---GKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRS 551 (1015)
Q Consensus 475 ~~p~GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~~~~~~---~~~~~l~~qL~kL~~~L~ss~~~IsP~~fl~~L~k 551 (1015)
.-|+||.|+|||||||+.+|||..+|+++..+.......... ....-+..+++.+|+.+.+. ..+.|..++..+.+
T Consensus 103 ~lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t~~~a~~i~~~mR~~f~~~~~~-~~v~pi~llqtl~~ 181 (473)
T KOG1872|consen 103 PLPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDTWERRRRISIETRTCFRPLCEK-GAVAPINLLQTLSS 181 (473)
T ss_pred cCCccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCchhhhhhhHHHHHHHHHHhhhcc-CCcchHHHHHHHHH
Confidence 557899999999999999999999999987775543222211 12456788899999999988 99999999999998
Q ss_pred hcccCCC------CCcCcHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCcccc--e
Q 001772 552 ISCQIGD------GSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESER--Y 623 (1015)
Q Consensus 552 ~~~~F~~------g~QQDA~EFL~~LLd~Le~e~l~~~~~~~~~~~~~~~~s~I~~lF~G~l~~~i~C~~Cg~~s~~--~ 623 (1015)
-.|.|.. ..||||.|++..++-.+++.+... .... .....+..+|++.+.....|.+-...... .
T Consensus 182 ~~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~----~~~~---~~~~~~d~~f~~~~~~t~~~~e~e~~~~~~~~ 254 (473)
T KOG1872|consen 182 QYPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVA----TEAP---CLEAEAAAGFGAEFSTTMSCSEGEDEGGGAGR 254 (473)
T ss_pred HhHHHHHHhhhhhHHHHHHhHhHHHhhhheecccccc----cccc---chhHHHHHhhccccccceeeccCccccccccc
Confidence 8888765 689999999999999887643111 1111 33457889999999999999988776443 7
Q ss_pred eeeeeeeeccccccccHHHHHHhcCCCCcCCCCCccccccccccceeeeeeeeeccCceeEEEEEeeecc----cccccc
Q 001772 624 ENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEG----RYGKIN 699 (1015)
Q Consensus 624 E~f~~LsL~I~~~~~sLed~L~~f~~~E~Ldg~Nky~C~kC~~k~~A~K~~~I~~lP~iLiIqLkRF~~~----~~~Ki~ 699 (1015)
|.|..|...|......+...|..-+..++.. ..+.-+......|...|.++|.||+|+..||.++ ...|+-
T Consensus 255 E~~~~L~c~i~~~~~~~k~Gl~~~~~e~~~K-----~s~~lgr~a~y~k~~~isrlP~ylTvq~vrf~~k~k~~~~akil 329 (473)
T KOG1872|consen 255 ELVDQLKCIINKTVHDMRFGLKSGLSEEIQK-----ISSILGRPAAYQKVMYISRLPEYLTVQEVRFFSKAKIMVVAKIL 329 (473)
T ss_pred ccccccceEEeeeechhhhhhhhhhhhhhhc-----cCcccCCChHHHHHhHhhcCcccceEEEEEEEeccccchHHHHH
Confidence 8899999999877777777777665533321 2334444455567788999999999999999754 335888
Q ss_pred eeEecCccCCCCCccCCCC-------------------------------------------------CC-CCceeEEEE
Q 001772 700 KCITFPEMLDMMPFMTGTG-------------------------------------------------DT-PPLYMLYSV 729 (1015)
Q Consensus 700 ~~V~fPe~LDL~~y~~~~~-------------------------------------------------~~-~~~YeL~gV 729 (1015)
+.|.||..||...+|.... .. ...|+|.||
T Consensus 330 ~~V~fP~~ld~~d~ct~el~~k~~~~r~k~r~~edkk~~~~~~~k~~~~~~~~~~~~~e~~~~~~~~~s~~~g~y~l~~v 409 (473)
T KOG1872|consen 330 NAVNFPKDLDQQDLCTPELKKKLLCRRKKHRKVEDKKKEEDVMPKVKGAQERLKEVPLEGMYNKSGGKSRNSGLYDLQLV 409 (473)
T ss_pred HhccChhhhhHHHhhCHHhhcCccchHHHHHHHHhcCCchhhcccccCcCcccccccccchhccccccccccceeeeeEe
Confidence 8999999999877765210 02 568999999
Q ss_pred EEEEcCCCCCCCCcEEEEEECCCCcEEEEeCCceeeeCCccccC-------CCcEEEEEEEc
Q 001772 730 VVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQVMS-------EGAYMLFYMRS 784 (1015)
Q Consensus 730 IvH~G~~~S~~sGHYVayVK~~dg~W~~FNDs~Vt~vs~eeVls-------~~AYILfYeR~ 784 (1015)
|.|.|. +..+|||++++|...+.|++|||+.|+.+..+.++. ..||||+|+-+
T Consensus 410 ithkgr--ss~sghy~aw~r~s~~~w~~fdd~~vs~v~~e~i~~lsgggd~~~ayvllyk~~ 469 (473)
T KOG1872|consen 410 ITHKGR--SSKSGHYVAWNRVSEDKWGHFDDDMVSFVLGETILSLSGGGDWHSAYVLLYKAR 469 (473)
T ss_pred eecccc--ccCCCcceEEEeccCCceeeccccccccccccceeeecCCCccchhhheeeccc
Confidence 999998 888999999999988999999999999998888875 35999999864
No 37
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.1e-26 Score=250.88 Aligned_cols=304 Identities=26% Similarity=0.346 Sum_probs=221.2
Q ss_pred CCCcccccCCCccchHHHHHHHhcCHHHHHHHHhccc-CcccCCCcchHHHHHHHHHHHHHc------------------
Q 001772 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSH-SSACCGKDWCLMCELEQHVMMLRE------------------ 535 (1015)
Q Consensus 475 ~~p~GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~-~~~~~~~~~~l~~qL~kL~~~L~s------------------ 535 (1015)
..|+|+.|-||-|||||+||+|+.|++|.+.+..... ..........++.++..+......
T Consensus 26 i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~~~~~~~~~~stp~lda~~~~~~df~n~~~~k~~r~N~~~~~~~~ 105 (420)
T KOG1871|consen 26 IDPRGSINKCNICFMNSILQALLYCSPFYNLLELIKRADGTVKEGSTPLLDASRPASSDFNNDSDAKLPRKNSLRVPEHV 105 (420)
T ss_pred cCCccccccceeEeeHHHHHHHHhCccHHHHHHhhhhhcCceecccchhHHHHHHHHhhccccchhhhhhhccCCccccc
Confidence 6789999999999999999999999999987743221 111112223344443333322210
Q ss_pred -----------CCCCCChHHHHHHHHhhc--ccCCCCCcCcHHHHHHHHHHHHHHHHHhhcC------------------
Q 001772 536 -----------SAGPLSPGRILSHMRSIS--CQIGDGSQEDAHEFLRLLVASMQSICLERHG------------------ 584 (1015)
Q Consensus 536 -----------s~~~IsP~~fl~~L~k~~--~~F~~g~QQDA~EFL~~LLd~Le~e~l~~~~------------------ 584 (1015)
....+-|..+...+.... ....+|+|+||.|||.++||.|++++.+...
T Consensus 106 ~~~ses~~~d~~~dav~~d~~~~~l~t~~~~e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~~i~~~ 185 (420)
T KOG1871|consen 106 VEKSESNKSDLQGDAVKPDPIYLDLLTMSRFESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRGLINNG 185 (420)
T ss_pred cchhhhhhhcccCccccCCchhhhcccCCchhhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCccccccccccccc
Confidence 012233334433333222 2446689999999999999999998643210
Q ss_pred ----CCCCCCCc----------------------cccccccccccceEEEEEEEecCCCCcccceeeeeeeeecccc-cc
Q 001772 585 ----GESKVDPR----------------------LQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYG-WV 637 (1015)
Q Consensus 585 ----~~~~~~~~----------------------~~~~s~I~~lF~G~l~~~i~C~~Cg~~s~~~E~f~~LsL~I~~-~~ 637 (1015)
.+...++. .-..++|.++|+|+++..+.-. -.+++...+||..|+|+|.. ..
T Consensus 186 n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~-~nkeS~tlqPF~tlqldiq~~~i 264 (420)
T KOG1871|consen 186 NLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQP-SNKESATLQPFFTLQLDIQSEKI 264 (420)
T ss_pred ccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceecc-ccccccccCccceeeeeeecccc
Confidence 00000000 0124778999999999887754 35667899999999999963 46
Q ss_pred ccHHHHHHhcCCCCcCCCCCccccccccccceeeeeeeeeccCceeEEEEEeee---cccccccceeEecCccCCCCCcc
Q 001772 638 ESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQ---EGRYGKINKCITFPEMLDMMPFM 714 (1015)
Q Consensus 638 ~sLed~L~~f~~~E~Ldg~Nky~C~kC~~k~~A~K~~~I~~lP~iLiIqLkRF~---~~~~~Ki~~~V~fPe~LDL~~y~ 714 (1015)
.+++++|+.+...|.+.+ |.-. -+....+.+++.+.++|.+|++||+||. .+...|+.+.|++|-.|.+..-+
T Consensus 265 ~sv~~ales~~~re~lp~---~st~-s~~eV~~s~q~~leklp~vlilhlkrF~ye~tgg~~k~~K~i~~~~~l~i~~~~ 340 (420)
T KOG1871|consen 265 HSVQDALESLVARESLPG---YSTK-SGQEVEASSQTTLEKLPPVLILHLKRFVYEKTGGARKLGKKIEYPWTLKISKNC 340 (420)
T ss_pred CCHHHHhhccChhhcccc---eecC-CCCeechhhhhhHhhcchhhhhhhhHHHHHhccchhhhchhhhccceeeechhh
Confidence 899999999999999986 4443 6788889999999999999999999996 45668999999999777765443
Q ss_pred CC------CCCCCCceeEEEEEEEEcCCCCCCCCcEEEEEECC-CCcEEEEeCCceeeeCCccccC----CCcEEEEEEE
Q 001772 715 TG------TGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM-QGTWFRIDDTQVHPVPMSQVMS----EGAYMLFYMR 783 (1015)
Q Consensus 715 ~~------~~~~~~~YeL~gVIvH~G~~~S~~sGHYVayVK~~-dg~W~~FNDs~Vt~vs~eeVls----~~AYILfYeR 783 (1015)
.. ...-...|+|.+||.|.|. ++..|||..-+.+. .+.|+++||..|..+..++|.+ ..+|+|+|+|
T Consensus 341 ~s~gvk~~~~~~~~~yks~~vvyhtgt--satvghYl~dv~~s~~~gw~rIDD~~i~~v~q~dv~~~t~~r~~yllyY~~ 418 (420)
T KOG1871|consen 341 FSQGLKIRILIATRPYKSLAVVYHTGT--SATVGHYLEDVSRSVPSGWQRIDDALILFVAQEDVEKVTGSRTPYLLYYIE 418 (420)
T ss_pred hccccchhhhccccccceEEEEEeccc--ccccCceEEeeeecccCceeEeccceeeeccHhhhccccCccchheeEeee
Confidence 31 1224568999999999998 88899999988763 5679999999999999988876 4699999998
Q ss_pred cC
Q 001772 784 SC 785 (1015)
Q Consensus 784 ~~ 785 (1015)
.+
T Consensus 419 ~d 420 (420)
T KOG1871|consen 419 AD 420 (420)
T ss_pred cC
Confidence 63
No 38
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.84 E-value=1.3e-20 Score=206.99 Aligned_cols=282 Identities=23% Similarity=0.319 Sum_probs=217.0
Q ss_pred CCCcccccCCCccchHHHHHHHhcCHHHHHHHHhcccCcccCCCcchHHHHHHHHHHHHHcCC---CCCChHHHHHHHHh
Q 001772 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESA---GPLSPGRILSHMRS 551 (1015)
Q Consensus 475 ~~p~GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~~~~~~~~~~~l~~qL~kL~~~L~ss~---~~IsP~~fl~~L~k 551 (1015)
+|.+||.|+-++=|+|++||+|.+.+++|+|++.... ..+....++..|..|++.||+.. ..++|.+++.++..
T Consensus 132 pG~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~~n---~~d~~~~lv~rl~~l~rklw~~r~fk~hvSphe~lqaV~~ 208 (442)
T KOG2026|consen 132 PGFVGLNNIKANDYANAVLQALSHVVPLRNYFLLEEN---YFDNLTELVQRLGELIRKLWNPRNFKGHVSPHEFLQAVMK 208 (442)
T ss_pred eeeeccchhhhHHHHHHHHHHHhccchhhhhhccccc---ccchhHHHHHHHHHHHHHhcChhhhcccCCHHHHHHHHHH
Confidence 7789999999999999999999999999999976532 12345568888999999999754 57999999998866
Q ss_pred hc-ccCCCCCcCcHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccccccccceEEEEEEEecC--CCC--cccceeee
Q 001772 552 IS-CQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLR--CSH--ESERYENI 626 (1015)
Q Consensus 552 ~~-~~F~~g~QQDA~EFL~~LLd~Le~e~l~~~~~~~~~~~~~~~~s~I~~lF~G~l~~~i~C~~--Cg~--~s~~~E~f 626 (1015)
.. ..|..++|-|+.|||.+||+.||..+ ++.. ...++|++.|.|.++...+=.. -+. .....-+|
T Consensus 209 ~s~k~f~i~~q~DpveFlswllntlhs~l----~~~k------~~~SIi~~~fqG~~ri~k~~~~~~~~~~~~~i~~~~F 278 (442)
T KOG2026|consen 209 LSKKRFRIGQQSDPVEFLSWLLNTLHSDL----RGSK------KASSIIHKSFQGEVRIVKEKQGEASENENKEISVMPF 278 (442)
T ss_pred HhhhheecCCCCCHHHHHHHHHHHHHHHh----CCCC------CchhHhhHhhcceEEeeeeccccccccccceEEEEee
Confidence 64 68999999999999999999999753 3221 3457999999999976544322 111 13345589
Q ss_pred eeeeeccccc-------------cccHHHHHHhcCCCCcCCCCCccccccccccceeeeeeeeeccCceeEEEEEeeecc
Q 001772 627 MDLTLEIYGW-------------VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEG 693 (1015)
Q Consensus 627 ~~LsL~I~~~-------------~~sLed~L~~f~~~E~Ldg~Nky~C~kC~~k~~A~K~~~I~~lP~iLiIqLkRF~~~ 693 (1015)
+.|+|++|.. ...|-+.|..|.....-+ +. ....+ ++.++.++|++||+|++||...
T Consensus 279 l~LtLDLP~~plfkD~~e~niiPQV~l~~lL~Kf~g~t~~e----~~-----~~~~~-~rf~l~k~P~ylifh~~rF~kN 348 (442)
T KOG2026|consen 279 LYLTLDLPPPPLFKDVMEKNIIPQVALFDLLKKFDGETVTE----VV-----TPKLA-MRFRLTKLPRYLIFHMKRFKKN 348 (442)
T ss_pred EEEEecCCCCCcccchhhhcccccchHHHHHHHhcCceeee----ec-----chhhh-hheeeecCCceEEEEeeecccc
Confidence 9999999842 247888888887644333 11 12223 7788999999999999999866
Q ss_pred cc--cccceeEecC-ccCCCCCccCCC---CCCCCceeEEEEEEEEcCCCCCCCCcEEEEEECC-CCcEEEEeCCceeee
Q 001772 694 RY--GKINKCITFP-EMLDMMPFMTGT---GDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM-QGTWFRIDDTQVHPV 766 (1015)
Q Consensus 694 ~~--~Ki~~~V~fP-e~LDL~~y~~~~---~~~~~~YeL~gVIvH~G~~~S~~sGHYVayVK~~-dg~W~~FNDs~Vt~v 766 (1015)
++ .|+.+-++|| ..+|+.++.... ...-..|.|.|-++|... -|||...|++. .++||..+|-.|++.
T Consensus 349 n~f~ekNpTl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~i~~~e-----~~~~riqi~~~~s~kW~eiqdl~v~e~ 423 (442)
T KOG2026|consen 349 NFFKEKNPTLVEFPYSEVDILHVLDRLKAVNHKVTQYSLVANAIHEDE-----DGNFRIQIYDNSSEKWYEIQDLHVTER 423 (442)
T ss_pred CcccccCCceeeccCCccchhhhhhhcccccCccccccchhhhhcCcc-----cCceEEEEEeCCCcceEEecccchhhh
Confidence 55 6899999999 677766555422 122368999999999742 69999999874 689999999999999
Q ss_pred CCccccCCCcEEEEEEEc
Q 001772 767 PMSQVMSEGAYMLFYMRS 784 (1015)
Q Consensus 767 s~eeVls~~AYILfYeR~ 784 (1015)
..+-+.-..+||-+|++.
T Consensus 424 ~~qmi~L~Es~iQiwe~~ 441 (442)
T KOG2026|consen 424 LPQMIFLKESFIQIWEKQ 441 (442)
T ss_pred hhHHHHHHHHHHHHHhcc
Confidence 877777777888888764
No 39
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.76 E-value=3.7e-18 Score=202.16 Aligned_cols=302 Identities=19% Similarity=0.293 Sum_probs=212.3
Q ss_pred hccCCCCCcccccCCCccchHHHHHHHhcCHHHHHHHHhcccCcccCCCcchHHHHHHHHHHHHHc-CCCCCChHHHHHH
Q 001772 470 EVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRE-SAGPLSPGRILSH 548 (1015)
Q Consensus 470 ~~~~~~~p~GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~~~~~~~~~~~l~~qL~kL~~~L~s-s~~~IsP~~fl~~ 548 (1015)
..+....++||.-.+-+-|.|++||+|+++|++|..++.+. +....|++|+|..||.+|.. .+.+.....|+.+
T Consensus 492 ~~~NqT~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H~-----C~~e~CL~CELGFLF~Ml~~S~G~~Cqa~NFlra 566 (1118)
T KOG1275|consen 492 QDYNQTTYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRHI-----CTKEFCLLCELGFLFTMLDSSTGDPCQANNFLRA 566 (1118)
T ss_pred cccccceeeccCCCCchHHHHHHHHHHHhccHHHHHHHcCc-----cchhHHHHHHHHHHHHHHhhhcCCccchhHHHHH
Confidence 33444778999999999999999999999999999999873 67789999999999999975 4558889999999
Q ss_pred HHhhcccCCCC----------------CcCcHHHHHHHHHHHHHH--HHHhhcCCCCC--CCCccccccccccccceEEE
Q 001772 549 MRSISCQIGDG----------------SQEDAHEFLRLLVASMQS--ICLERHGGESK--VDPRLQETTFIQHTFGGRLW 608 (1015)
Q Consensus 549 L~k~~~~F~~g----------------~QQDA~EFL~~LLd~Le~--e~l~~~~~~~~--~~~~~~~~s~I~~lF~G~l~ 608 (1015)
++.....-..| --|||..|..-..+.... .|+.-...+.. ..........+.+.|+-.++
T Consensus 567 f~t~~~a~~LG~vl~d~~~~~~~~~~~liq~~~~~~~set~~~~d~~~~~~~~~s~~~~~~~~~vn~~~~l~q~F~~~~e 646 (1118)
T KOG1275|consen 567 FRTNPEASALGLVLSDTQISGTVNDDVLIQDAEGFISSETSRHLDCQDCRGLQQSESVDGESFKVNYAPVLQQSFCQEIE 646 (1118)
T ss_pred HhhChHhhhhcccccchhhccccchHHHhhhhhhccchhhhhhhhHHHhhhhhhhhcccCceeeecchhHHHHHhhhHHH
Confidence 87664321111 123444333222222111 00000000000 01112234578999999999
Q ss_pred EEEEecCCCCcccceeeeeeeeeccccc--------cccHHHHHHhcCCCCcCCCCCccccccccccceeeeeeeeeccC
Q 001772 609 SKVKCLRCSHESERYENIMDLTLEIYGW--------VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAP 680 (1015)
Q Consensus 609 ~~i~C~~Cg~~s~~~E~f~~LsL~I~~~--------~~sLed~L~~f~~~E~Ldg~Nky~C~kC~~k~~A~K~~~I~~lP 680 (1015)
....|..|+..+.+......+.+..++. ...+.+.|+.-...+. .-+-+|+.|++......+..+..+|
T Consensus 647 ~~~~Cg~C~~~~~~~k~l~~~~lsyp~~~~id~~~~~~~F~~iL~R~l~l~k---n~~~~C~~C~k~ep~~q~~~vr~LP 723 (1118)
T KOG1275|consen 647 KSLRCGECGDEKQKSKSLLRKVLSYPNVLLIDTLAKSNNFVEILKRSLSLFK---NKQAWCETCTKPEPTSQKKNVRSLP 723 (1118)
T ss_pred HhhhcccccchhhhhhhhhheeecCCCccchhhcccccchHHHhhhhhhccc---ccccccccccCCCCcccccccccCc
Confidence 9999999999977666666666665531 1234444543333222 1236899999999999989999999
Q ss_pred ceeEEEEEeeecccc------cccceeEecCccCCCCCccCC------------------CCCCCCceeEEEEEEEEcCC
Q 001772 681 NILTIVLKRFQEGRY------GKINKCITFPEMLDMMPFMTG------------------TGDTPPLYMLYSVVVHLDTQ 736 (1015)
Q Consensus 681 ~iLiIqLkRF~~~~~------~Ki~~~V~fPe~LDL~~y~~~------------------~~~~~~~YeL~gVIvH~G~~ 736 (1015)
++|.|...-+..+.+ .|....|.+|+.+.|..--.. +...-..|+|.|+|+|.|.
T Consensus 724 d~L~in~~~~~~~~~~~~a~q~~~~~~vWLP~~~~~~~~k~~~~~v~~~s~~~~~~~~~~d~~~~~vYeL~a~V~~I~d- 802 (1118)
T KOG1275|consen 724 DCLSINTCLNVHELVDFWARQNKLLEDVWLPEWFHMIISKNKAQLVSTISDLDVSPLPDYDEPSAVVYELDAMVHAIGD- 802 (1118)
T ss_pred ceeeeeeeccchhhhhhHHHhhccccccccchheeEEEecccceeeeeeccccCCCCccccCCceEEEEeeeEEEEecc-
Confidence 999999988753321 366788899988776533221 1122368999999999998
Q ss_pred CCCCCCcEEEEEECC---------CCcEEEEeCCceeeeCCccccC-----CCcEEEEE
Q 001772 737 NASFSGHYVSYIKDM---------QGTWFRIDDTQVHPVPMSQVMS-----EGAYMLFY 781 (1015)
Q Consensus 737 ~S~~sGHYVayVK~~---------dg~W~~FNDs~Vt~vs~eeVls-----~~AYILfY 781 (1015)
+-+.+|.|++||.. +.+||+|||.-|.++++++.+. +-+-||+|
T Consensus 803 -~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~EAl~~~~~WKvP~Il~Y 860 (1118)
T KOG1275|consen 803 -NENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEEEALHFDGPWKVPAILYY 860 (1118)
T ss_pred -CCCccceEEEEEccCcccccCcCcceeEEEcceeeeeCChHHheEeccCccCcEEEEE
Confidence 55689999999952 4699999999999999998875 46999999
No 40
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....
Probab=98.72 E-value=3.5e-09 Score=82.14 Aligned_cols=37 Identities=62% Similarity=1.218 Sum_probs=33.7
Q ss_pred ccccccccccccccCCCceecchhhhhhhchHhhHHhc
Q 001772 103 CARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQEC 140 (1015)
Q Consensus 103 C~~Cg~~~~~~Cs~Ck~v~YCs~~CQ~~dW~~~Hk~~C 140 (1015)
|..|++++..+|++|+.|+|||++||+.||+ .||.+|
T Consensus 1 C~~C~~~~~~~C~~C~~~~YCs~~Cq~~~w~-~Hk~~C 37 (37)
T PF01753_consen 1 CAVCGKPALKRCSRCKSVYYCSEECQRADWP-YHKFEC 37 (37)
T ss_dssp -TTTSSCSSEEETTTSSSEESSHHHHHHHHH-HHCCTH
T ss_pred CcCCCCCcCCcCCCCCCEEecCHHHHHHHHH-HHhhhC
Confidence 7889998888999999999999999999996 799887
No 41
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=98.66 E-value=8.3e-08 Score=102.66 Aligned_cols=134 Identities=21% Similarity=0.429 Sum_probs=87.3
Q ss_pred ccccccccccceEEEEEEEecCCCCccc-cee-eeeeeeeccccccccHHHHHHhcCCCCcCCCCCccccccccccceee
Q 001772 594 QETTFIQHTFGGRLWSKVKCLRCSHESE-RYE-NIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRAR 671 (1015)
Q Consensus 594 ~~~s~I~~lF~G~l~~~i~C~~Cg~~s~-~~E-~f~~LsL~I~~~~~sLed~L~~f~~~E~Ldg~Nky~C~kC~~k~~A~ 671 (1015)
+....+.++|...+.-...|..||+... +.. .....+--+|. |.- +.-..---|.+|+.+. .+
T Consensus 118 k~d~~~E~lF~~sf~WeFeC~~Cg~~~~~R~~K~L~TFtnv~pd-----------whP---LnA~h~~pCn~C~~ks-Q~ 182 (275)
T PF15499_consen 118 KLDPWIEKLFLYSFSWEFECSQCGHKYQNRCTKTLVTFTNVIPD-----------WHP---LNAVHFGPCNSCNSKS-QR 182 (275)
T ss_pred hcchHHHhHhheeeEEEEEccccCChhhhhheeeecccCCCCCC-----------CCc---ccccccCCCcccCChH-Hh
Confidence 4556789999999999999999998732 211 11111111222 111 1111114699998765 45
Q ss_pred eeeeeeccCceeEEEEEeeecccccccceeEecCccCCCCCccCCCCCCCCceeEEEEEEEEcCCCCCCCCcEEEEEECC
Q 001772 672 KQLSIHEAPNILTIVLKRFQEGRYGKINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM 751 (1015)
Q Consensus 672 K~~~I~~lP~iLiIqLkRF~~~~~~Ki~~~V~fPe~LDL~~y~~~~~~~~~~YeL~gVIvH~G~~~S~~sGHYVayVK~~ 751 (1015)
+++.+.++|+++++|+ ..|-..+ ||..|--. -....|++.+||-+.-. --|+|+++++.
T Consensus 183 rkMvlekv~~vfmLHF---VeGLP~n-----------dl~~ysF~--feg~~Y~Vt~VIQY~~~-----~~HFvtWi~~~ 241 (275)
T PF15499_consen 183 RKMVLEKVPPVFMLHF---VEGLPHN-----------DLQHYSFH--FEGCLYQVTSVIQYQAN-----LNHFVTWIRDS 241 (275)
T ss_pred HhhhhhcCchhhhhhh---hccCCcc-----------CCCcccee--ecCeeEEEEEEEEEecc-----CceeEEEEEcC
Confidence 6788999999999994 3332211 22222111 12467999999999764 58999999999
Q ss_pred CCcEEEEeCCce
Q 001772 752 QGTWFRIDDTQV 763 (1015)
Q Consensus 752 dg~W~~FNDs~V 763 (1015)
+|.|..+||-+=
T Consensus 242 dGsWLecDDLkg 253 (275)
T PF15499_consen 242 DGSWLECDDLKG 253 (275)
T ss_pred CCCeEeeccCCC
Confidence 999999999763
No 42
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=98.36 E-value=1.2e-07 Score=102.40 Aligned_cols=42 Identities=48% Similarity=1.145 Sum_probs=38.3
Q ss_pred cccccccccc-ccccccCCCceecchhhhhhhchHhhHHhcHhh
Q 001772 101 QLCARCFAPA-TTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQL 143 (1015)
Q Consensus 101 ~~C~~Cg~~~-~~~Cs~Ck~v~YCs~~CQ~~dW~~~Hk~~C~~~ 143 (1015)
..|..||.++ .+||+.||+|.||+++||+-||. .||+.|..+
T Consensus 320 ~fCstCG~~ga~KrCs~CKav~YCdqeCQk~hWf-~HKK~C~~L 362 (396)
T KOG1710|consen 320 QFCSTCGHPGAKKRCSQCKAVAYCDQECQKFHWF-IHKKVCSFL 362 (396)
T ss_pred ccccccCCCCccchhhhhHHHHHHHHHHHHhhhH-HHHHHHHHH
Confidence 4799999855 47999999999999999999998 699999988
No 43
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]
Probab=97.34 E-value=0.00014 Score=84.03 Aligned_cols=98 Identities=18% Similarity=0.194 Sum_probs=49.1
Q ss_pred CcccccCCCccchHHHHHHHhcCHHHHHHHHhcccCcccCCCcchHHHHHH-HHHHHHHcCCCCCChHH---HHHHHHhh
Q 001772 477 PRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELE-QHVMMLRESAGPLSPGR---ILSHMRSI 552 (1015)
Q Consensus 477 p~GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~~~~~~~~~~~l~~qL~-kL~~~L~ss~~~IsP~~---fl~~L~k~ 552 (1015)
..|++-.-|+||+||.|-++|.......-.+..................|+ +++.-|+..+ .+.... +...+.++
T Consensus 368 ~kgiqgh~nscyldstlf~~f~f~sv~dS~l~rrp~p~d~~nYse~q~~LRseiVnplr~n~-fVr~~~~mklR~~ldql 446 (724)
T KOG3556|consen 368 IKGIQGHPNSCYLDSTLFKPFEFDSVTDSTLPRRPPPSDSMNYSEMQHSLRSEIVNPLRRNQ-FVRQNPAMKLRVELDQL 446 (724)
T ss_pred cccccCCcchhhccccccccccccccccccccCCCCcccccccHHHHHHHHHhhhchhhhcc-eeecCHHHHHHHHHHhh
Confidence 468999999999999999998765444333322211111111111111121 1112232221 122211 22222222
Q ss_pred cccCCCC---CcCcHHHHHHHHHHHHHH
Q 001772 553 SCQIGDG---SQEDAHEFLRLLVASMQS 577 (1015)
Q Consensus 553 ~~~F~~g---~QQDA~EFL~~LLd~Le~ 577 (1015)
.|..| +..|+.|||.-|+..|-+
T Consensus 447 --~~~sG~tceekdpEEFLn~l~t~i~r 472 (724)
T KOG3556|consen 447 --NFRSGDTCEEKDPEEFLNGLKTLIAR 472 (724)
T ss_pred --hccccCcccccCHHHHHHHHHHHhcc
Confidence 33333 678999999999877743
No 44
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.0031 Score=76.84 Aligned_cols=99 Identities=23% Similarity=0.325 Sum_probs=56.7
Q ss_pred cccCCCccchHHHHHHHhcCHHHHHHHHhccc---Cccc-----CCCcchHHHHHHHHHH---HHHcC-----CCCCChH
Q 001772 480 LLNCGNSCYANAVLQCLTCTKPLVIYLLRRSH---SSAC-----CGKDWCLMCELEQHVM---MLRES-----AGPLSPG 543 (1015)
Q Consensus 480 L~NlGNTCYlNSVLQ~L~sip~fr~~Ll~~~~---~~~~-----~~~~~~l~~qL~kL~~---~L~ss-----~~~IsP~ 543 (1015)
|+|.||+||.||+||+|..+|+|+..+..... .... ........+....+-. ..... ...++-.
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 113 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKNSSSNESFNLSVT 113 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhccCCccccccchHH
Confidence 99999999999999999999999977643211 1000 0011111111111111 11111 1112223
Q ss_pred HHHHHHH---hhcccCCCCCcCcHHHHHHHHHHHHHHH
Q 001772 544 RILSHMR---SISCQIGDGSQEDAHEFLRLLVASMQSI 578 (1015)
Q Consensus 544 ~fl~~L~---k~~~~F~~g~QQDA~EFL~~LLd~Le~e 578 (1015)
.+...+. +....|....|+||++|+.-|+-.+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~ 151 (587)
T KOG1864|consen 114 QLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDV 151 (587)
T ss_pred HHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhh
Confidence 3333332 2335688899999999999988877654
No 45
>KOG2061 consensus Uncharacterized MYND Zn-finger protein [General function prediction only]
Probab=96.25 E-value=0.0021 Score=72.88 Aligned_cols=55 Identities=36% Similarity=0.744 Sum_probs=47.8
Q ss_pred CCCcCcccccccccccccccccCCCceecchhhhhhhchHhhHHhcHhhHhhcCC
Q 001772 95 TSKNGFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEKTSSS 149 (1015)
Q Consensus 95 ~~~~~~~~C~~Cg~~~~~~Cs~Ck~v~YCs~~CQ~~dW~~~Hk~~C~~~~~~~~~ 149 (1015)
..+.+...|..||..+...|++|+.+.|||+.+|..||+.+|+..|.+.......
T Consensus 131 ~~~~~~~~~~~~~~~a~~~~~~~~~a~~~S~~~q~~d~~~~~~~a~aq~~~~~~~ 185 (362)
T KOG2061|consen 131 ADKDGADLCGSCGCSAPAACSPCKAAAYCSKKHQSLDWPKGHKDACAQPSTLGEI 185 (362)
T ss_pred ccCcccchhccCcccCcccccccchhhhcCchhhcccccccccccccCccccccc
Confidence 4556678999999999999999999999999999999997899999877655444
No 46
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.66 E-value=0.0027 Score=74.60 Aligned_cols=42 Identities=36% Similarity=0.902 Sum_probs=37.4
Q ss_pred ccccccccccccccccCCCceecchhhhhhhchHhhHHhcHhhHh
Q 001772 101 QLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEK 145 (1015)
Q Consensus 101 ~~C~~Cg~~~~~~Cs~Ck~v~YCs~~CQ~~dW~~~Hk~~C~~~~~ 145 (1015)
.=|++|...+-..| |-.+.||+.+||..||+ +|++.|+.-..
T Consensus 528 QWC~nC~~EAiy~C--CWNTSYCsveCQQ~HW~-~H~ksCrrk~~ 569 (588)
T KOG3612|consen 528 QWCYNCLDEAIYHC--CWNTSYCSVECQQGHWP-EHRKSCRRKKT 569 (588)
T ss_pred HHHHhhhHHHHHHh--hccccccCcchhhccch-hHhhhhcccCC
Confidence 46999999998888 89999999999999998 79999987654
No 47
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=92.71 E-value=0.029 Score=69.20 Aligned_cols=162 Identities=17% Similarity=0.272 Sum_probs=98.4
Q ss_pred ccccccccceEEEEEEEecCCCCcccce-eeeeeeeeccc--------cccccHHHHHHhcCCCCcCCCCCccccc----
Q 001772 596 TTFIQHTFGGRLWSKVKCLRCSHESERY-ENIMDLTLEIY--------GWVESLEDALTQFTSPEDLDGENMYKCA---- 662 (1015)
Q Consensus 596 ~s~I~~lF~G~l~~~i~C~~Cg~~s~~~-E~f~~LsL~I~--------~~~~sLed~L~~f~~~E~Ldg~Nky~C~---- 662 (1015)
.+++.++|+.....+..|..|+...... ..-+-+.+... -...++++.|.. ...+. +..|+
T Consensus 593 ~~l~~~lf~l~~~e~~Sc~~cr~~~n~peqsS~~~~~~a~slr~~k~a~~n~~f~~ilk~-i~m~~-----~m~cD~~~g 666 (806)
T KOG1887|consen 593 ESLVNRLFTLEEKERMSCSKCRRDLNYPEQSSYGIVIAADSLRQLKCAFQNITFEDILKN-IRMND-----KMLCDKETG 666 (806)
T ss_pred HHHHHhhhhhhhhhhccccccccCCCCcchhhhhhhccchhhhhHHHHhhhhhHHHHHHH-hhhhh-----hhcccccCC
Confidence 4678889999999999999999874433 22111211111 012345555554 22111 13343
Q ss_pred cccccceeeeeeeeeccCceeEEEEEeeeccccccc--ceeEecCccCCCCCccCCCCCCCCceeEEEEEEEEcCCCCCC
Q 001772 663 RCATYVRARKQLSIHEAPNILTIVLKRFQEGRYGKI--NKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASF 740 (1015)
Q Consensus 663 kC~~k~~A~K~~~I~~lP~iLiIqLkRF~~~~~~Ki--~~~V~fPe~LDL~~y~~~~~~~~~~YeL~gVIvH~G~~~S~~ 740 (1015)
.|++..- ....|...|+|.+|.|..=.. ...|. .+...+..++|++.....+.+....|+|+++|.-...
T Consensus 667 GCgk~n~--v~h~is~~P~vftIvlewEk~-ETe~eI~~T~~aL~teidis~~y~~g~ep~t~yrLVSmv~~~e~----- 738 (806)
T KOG1887|consen 667 GCGKANL--VHHILSPCPPVFTIVLEWEKS-ETEKEISETTKALATEIDISRLYREGLEPNTKYRLVSMVGNHEE----- 738 (806)
T ss_pred CCcchhh--hhhhcCCCCCeeEeeeehhcc-cchHHHHHHHHHHHhhhhHHHHhhhccCcCceeEEEEEeeeccc-----
Confidence 4665332 233578899999997665321 11111 1112234567776555445566789999999987653
Q ss_pred CCcEEEEEECCCCcEE--EEeCCceeee-CCcccc
Q 001772 741 SGHYVSYIKDMQGTWF--RIDDTQVHPV-PMSQVM 772 (1015)
Q Consensus 741 sGHYVayVK~~dg~W~--~FNDs~Vt~v-s~eeVl 772 (1015)
.++|.|+... .++|+ +.+|..+..+ ++.+|+
T Consensus 739 ~~~~~C~Aye-~Nrwvs~r~~~~~~e~iG~w~dvv 772 (806)
T KOG1887|consen 739 GEEYICFAYE-PNRWVSLRHEDSQGEVVGDWKDVV 772 (806)
T ss_pred cceEEEeecc-CCcchhhHHHHHHhhhccchHHHH
Confidence 5999999998 78888 8999887766 455554
No 48
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=92.34 E-value=0.88 Score=51.98 Aligned_cols=76 Identities=20% Similarity=0.223 Sum_probs=40.2
Q ss_pred CCcccccCCCccchHHHHHHHhcCHH-HHHHHHhcccCcccCCCcchHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhcc
Q 001772 476 SPRGLLNCGNSCYANAVLQCLTCTKP-LVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISC 554 (1015)
Q Consensus 476 ~p~GL~NlGNTCYlNSVLQ~L~sip~-fr~~Ll~~~~~~~~~~~~~~l~~qL~kL~~~L~ss~~~IsP~~fl~~L~k~~~ 554 (1015)
|.+=|+=..|+||+||++=+|-++.. |+. -.++.+...+..+ .|..|...+-.. .
T Consensus 101 g~~~Lkq~dNNCwVna~~~~LQ~~~~~f~~-------------------~~l~~aw~~f~~G----~~~~fVa~~Ya~-~ 156 (320)
T PF08715_consen 101 GFRVLKQSDNNCWVNAACLQLQALKIKFKS-------------------PGLDEAWNEFKAG----DPAPFVAWCYAS-T 156 (320)
T ss_dssp TEEEE---TTTHHHHHHHHHHTTST--BSS-------------------HHHHHHHHHHHTT------HHHHHHHHHH-T
T ss_pred CEEEEEecCCCcHHHHHHHHHHhcCCccCC-------------------HHHHHHHHHHhCC----ChHHHHHHHHHH-c
Confidence 34445556799999999887765532 221 1233333444322 456666555433 2
Q ss_pred cCCCCCcCcHHHHHHHHHHHH
Q 001772 555 QIGDGSQEDAHEFLRLLVASM 575 (1015)
Q Consensus 555 ~F~~g~QQDA~EFL~~LLd~L 575 (1015)
.+..|+--||+++|..|+..+
T Consensus 157 ~~~~G~~gDa~~~L~~ll~~~ 177 (320)
T PF08715_consen 157 NAKKGDPGDAEYVLSKLLKDA 177 (320)
T ss_dssp T--TTS---HHHHHHHHHTTB
T ss_pred CCCCCCCcCHHHHHHHHHHhc
Confidence 556789999999999998654
No 49
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=91.48 E-value=0.2 Score=42.56 Aligned_cols=45 Identities=24% Similarity=0.534 Sum_probs=37.7
Q ss_pred ccccccc----ccccccccCCCceecchhhhhhhchHhhHHhcHhhHhhc
Q 001772 102 LCARCFA----PATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEKTS 147 (1015)
Q Consensus 102 ~C~~Cg~----~~~~~Cs~Ck~v~YCs~~CQ~~dW~~~Hk~~C~~~~~~~ 147 (1015)
.|.+|+. .....|..|....|||+++=..|-. .|++.|..+++.+
T Consensus 1 ~Cpv~~~~~~~~v~~~Cp~cGipthcS~ehw~~D~e-~H~~~c~~LRqvN 49 (55)
T PF13824_consen 1 LCPVCKKDLPAHVNFECPDCGIPTHCSEEHWEDDYE-EHRQLCERLRQVN 49 (55)
T ss_pred CCCCCccccccccCCcCCCCCCcCccCHHHHHHhHH-HHHHHHHHHHHhc
Confidence 3777877 5556899999999999999888886 6999999998744
No 50
>PLN03158 methionine aminopeptidase; Provisional
Probab=90.22 E-value=0.21 Score=58.66 Aligned_cols=40 Identities=35% Similarity=0.808 Sum_probs=34.6
Q ss_pred cccccccccccccccccCCC-------ceecchhhhhhhchHhhHHhc
Q 001772 100 FQLCARCFAPATTRCSRCKS-------VRYCSGKCQIIHWRQVHKQEC 140 (1015)
Q Consensus 100 ~~~C~~Cg~~~~~~Cs~Ck~-------v~YCs~~CQ~~dW~~~Hk~~C 140 (1015)
...|..|++.+.+.|-.|.. .++||.+|=+..|+ .||..=
T Consensus 9 ~~~c~~c~~~a~l~Cp~C~k~~~~~~~s~fCsq~CFk~~w~-~Hk~~h 55 (396)
T PLN03158 9 PLACARCSKPAHLQCPKCLELKLPREGASFCSQDCFKAAWS-SHKSVH 55 (396)
T ss_pred cccccCCCCcccccCccchhcCCCCCCceeECHHHHHHHHH-HHHHHH
Confidence 35799999999999999874 67999999999998 598765
No 51
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=85.40 E-value=0.33 Score=50.59 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=36.4
Q ss_pred EEEEEEEEcCCCCCCCCcEEEEEECCCCcEEEEeCCceeeeCCccccCCCcEEEEEEEcCCCCCc
Q 001772 726 LYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQVMSEGAYMLFYMRSCPRPRR 790 (1015)
Q Consensus 726 L~gVIvH~G~~~S~~sGHYVayVK~~dg~W~~FNDs~Vt~vs~eeVls~~AYILfYeR~~~~~~~ 790 (1015)
..+.|.-.| .||-+.+.+. .+.||.+||+.+.+.++.. +-+|+|..-+..+..
T Consensus 129 f~agi~~~g------~~Havfa~~t-s~gWy~iDDe~~y~~tPdp-----~~VLvfvp~D~Epl~ 181 (193)
T PF05408_consen 129 FHAGIFLKG------QEHAVFACVT-SDGWYAIDDEDFYPWTPDP-----SDVLVFVPYDQEPLP 181 (193)
T ss_dssp EEEEEEEES------TTEEEEEEEE-TTCEEEEETTEEEE----G-----GGEEEEEESSSS-TT
T ss_pred hhhHheecC------CcceEEEEEe-eCcEEEecCCeeeeCCCCh-----hheEEEcccCcccCC
Confidence 456666666 4999999988 6779999999999886443 234778887765543
No 52
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=80.51 E-value=0.8 Score=34.27 Aligned_cols=28 Identities=46% Similarity=1.017 Sum_probs=21.4
Q ss_pred ccccccccccccccccCCCceecchhhhh
Q 001772 101 QLCARCFAPATTRCSRCKSVRYCSGKCQI 129 (1015)
Q Consensus 101 ~~C~~Cg~~~~~~Cs~Ck~v~YCs~~CQ~ 129 (1015)
..|.+|+..+.-+|.+|... |||.+|-+
T Consensus 3 ~~C~vC~~~~kY~Cp~C~~~-~CSl~C~k 30 (30)
T PF04438_consen 3 KLCSVCGNPAKYRCPRCGAR-YCSLACYK 30 (30)
T ss_dssp EEETSSSSEESEE-TTT--E-ESSHHHHH
T ss_pred CCCccCcCCCEEECCCcCCc-eeCcEeEC
Confidence 47999999777899999965 99999853
No 53
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=76.75 E-value=1.3 Score=44.52 Aligned_cols=33 Identities=30% Similarity=0.702 Sum_probs=28.2
Q ss_pred cccccccccccccccccCCCceecchhhhhhhch
Q 001772 100 FQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWR 133 (1015)
Q Consensus 100 ~~~C~~Cg~~~~~~Cs~Ck~v~YCs~~CQ~~dW~ 133 (1015)
.+.|++||-.....|-.|. ++||++.|-..|-.
T Consensus 118 r~fCaVCG~~S~ysC~~CG-~kyCsv~C~~~Hne 150 (156)
T KOG3362|consen 118 RKFCAVCGYDSKYSCVNCG-TKYCSVRCLKTHNE 150 (156)
T ss_pred chhhhhcCCCchhHHHhcC-Cceeechhhhhccc
Confidence 3579999998888999998 56999999977754
No 54
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=63.28 E-value=2.7 Score=42.21 Aligned_cols=37 Identities=32% Similarity=1.034 Sum_probs=28.8
Q ss_pred cccccccccc-ccccccCCCceecchhhhhhhchHhhHH--hcHhh
Q 001772 101 QLCARCFAPA-TTRCSRCKSVRYCSGKCQIIHWRQVHKQ--ECQQL 143 (1015)
Q Consensus 101 ~~C~~Cg~~~-~~~Cs~Ck~v~YCs~~CQ~~dW~~~Hk~--~C~~~ 143 (1015)
..|..|.+.. ..+|..|. |.|||..| || .||. .|...
T Consensus 6 ~tC~ic~e~~~KYKCpkC~-vPYCSl~C----fK-iHk~tPq~~~v 45 (157)
T KOG2857|consen 6 TTCVICLESEIKYKCPKCS-VPYCSLPC----FK-IHKSTPQCETV 45 (157)
T ss_pred eeehhhhcchhhccCCCCC-Cccccchh----hh-hccCCcccccc
Confidence 4799999855 56999998 56999999 87 6887 55443
No 55
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=63.23 E-value=26 Score=37.00 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=16.5
Q ss_pred CCCcccccCCCccchHHHHHHHhc
Q 001772 475 LSPRGLLNCGNSCYANAVLQCLTC 498 (1015)
Q Consensus 475 ~~p~GL~NlGNTCYlNSVLQ~L~s 498 (1015)
..++|+.|.+|+||+||++|++..
T Consensus 31 ~eft~~PN~~dnCWlNaL~QL~~~ 54 (193)
T PF05408_consen 31 MEFTGLPNNHDNCWLNALLQLFRY 54 (193)
T ss_dssp -EEE----SSSTHHHHHHHHHHHH
T ss_pred eEEecCCCCCCChHHHHHHHHHHH
Confidence 445799999999999999998864
No 56
>KOG4317 consensus Predicted Zn-finger protein [Function unknown]
Probab=51.56 E-value=5.3 Score=44.98 Aligned_cols=35 Identities=40% Similarity=0.888 Sum_probs=26.9
Q ss_pred cccccccc-ccccccccCCCceecchhhhhhhchHhhHHhcH
Q 001772 101 QLCARCFA-PATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQ 141 (1015)
Q Consensus 101 ~~C~~Cg~-~~~~~Cs~Ck~v~YCs~~CQ~~dW~~~Hk~~C~ 141 (1015)
-.|..|++ +...+|.||..- ||+-.|- + .|+..|.
T Consensus 8 ~~C~ic~vq~~~YtCPRCn~~-YCsl~CY----r-~h~~~Cs 43 (383)
T KOG4317|consen 8 LACGICGVQKREYTCPRCNLL-YCSLKCY----R-NHKHSCS 43 (383)
T ss_pred eeccccccccccccCCCCCcc-ceeeeee----c-CCCccch
Confidence 36999987 444799999964 9999995 4 4777785
No 57
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=44.59 E-value=15 Score=31.94 Aligned_cols=32 Identities=25% Similarity=0.536 Sum_probs=23.7
Q ss_pred cccccccccccccccccCCCceecchhhhhhhchHhhHH
Q 001772 100 FQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQ 138 (1015)
Q Consensus 100 ~~~C~~Cg~~~~~~Cs~Ck~v~YCs~~CQ~~dW~~~Hk~ 138 (1015)
++.|.+||++-.. .-.|||.+|+..-++ .+|+
T Consensus 3 HkHC~~CG~~Ip~------~~~fCS~~C~~~~~k-~qk~ 34 (59)
T PF09889_consen 3 HKHCPVCGKPIPP------DESFCSPKCREEYRK-RQKR 34 (59)
T ss_pred CCcCCcCCCcCCc------chhhhCHHHHHHHHH-HHHH
Confidence 3579999986553 256999999988776 4554
No 58
>PRK01343 zinc-binding protein; Provisional
Probab=39.96 E-value=26 Score=30.36 Aligned_cols=27 Identities=30% Similarity=0.768 Sum_probs=21.5
Q ss_pred ccccccccccccccccCCCceecchhhhhhhc
Q 001772 101 QLCARCFAPATTRCSRCKSVRYCSGKCQIIHW 132 (1015)
Q Consensus 101 ~~C~~Cg~~~~~~Cs~Ck~v~YCs~~CQ~~dW 132 (1015)
..|..|+++... ....|||+.|+..|-
T Consensus 10 ~~CP~C~k~~~~-----~~rPFCS~RC~~iDL 36 (57)
T PRK01343 10 RPCPECGKPSTR-----EAYPFCSERCRDIDL 36 (57)
T ss_pred CcCCCCCCcCcC-----CCCcccCHHHhhhhH
Confidence 469999997642 356899999999884
No 59
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=36.57 E-value=11 Score=30.47 Aligned_cols=29 Identities=38% Similarity=0.969 Sum_probs=22.3
Q ss_pred ccccccccccc--cccccCC-Cceecchhhhh
Q 001772 101 QLCARCFAPAT--TRCSRCK-SVRYCSGKCQI 129 (1015)
Q Consensus 101 ~~C~~Cg~~~~--~~Cs~Ck-~v~YCs~~CQ~ 129 (1015)
..|..||.+=. ++-.+|- .|.|||..|.+
T Consensus 9 K~C~~C~rpf~WRKKW~~~Wd~VkYCS~rCR~ 40 (42)
T PF10013_consen 9 KICPVCGRPFTWRKKWARCWDEVKYCSDRCRR 40 (42)
T ss_pred CcCcccCCcchHHHHHHHhchhhccHHHHhcc
Confidence 57999998654 4566665 79999999964
No 60
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=35.67 E-value=27 Score=30.79 Aligned_cols=35 Identities=20% Similarity=0.506 Sum_probs=28.2
Q ss_pred Cccccccccccceeeeeeeee--ccCceeEEEEEeee
Q 001772 657 NMYKCARCATYVRARKQLSIH--EAPNILTIVLKRFQ 691 (1015)
Q Consensus 657 Nky~C~kC~~k~~A~K~~~I~--~lP~iLiIqLkRF~ 691 (1015)
+.+.|++|+...-..+.+... .+-+++=||.++|-
T Consensus 3 ~~~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~ 39 (68)
T COG3478 3 NAFKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFI 39 (68)
T ss_pred ccccCCCcCCcchhhceeeccCCCcceeEEecccEEE
Confidence 457899999887777766554 68899999999994
No 61
>PF14353 CpXC: CpXC protein
Probab=27.24 E-value=80 Score=31.10 Aligned_cols=49 Identities=18% Similarity=0.390 Sum_probs=25.6
Q ss_pred EEecCCCCcccceeeeeeeeeccccccccHHHHHHhcCCCCcCCCCCcccccccccccee
Q 001772 611 VKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRA 670 (1015)
Q Consensus 611 i~C~~Cg~~s~~~E~f~~LsL~I~~~~~sLed~L~~f~~~E~Ldg~Nky~C~kC~~k~~A 670 (1015)
+.|..|++..... -+. .++... ...|.+.| +..+.. .+.|+.||.....
T Consensus 2 itCP~C~~~~~~~-v~~--~I~~~~-~p~l~e~i---l~g~l~----~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 2 ITCPHCGHEFEFE-VWT--SINADE-DPELKEKI---LDGSLF----SFTCPSCGHKFRL 50 (128)
T ss_pred cCCCCCCCeeEEE-EEe--EEcCcC-CHHHHHHH---HcCCcC----EEECCCCCCceec
Confidence 6899999874322 111 222211 12344333 233333 3999999986543
No 62
>KOG2858 consensus Uncharacterized conserved protein [General function prediction only]
Probab=26.17 E-value=24 Score=40.71 Aligned_cols=31 Identities=35% Similarity=0.828 Sum_probs=25.2
Q ss_pred cccccccccccc-ccccCCCceecchhhhhhhc
Q 001772 101 QLCARCFAPATT-RCSRCKSVRYCSGKCQIIHW 132 (1015)
Q Consensus 101 ~~C~~Cg~~~~~-~Cs~Ck~v~YCs~~CQ~~dW 132 (1015)
..|.+|++.+.+ +|.||- ++-|+-+|-++|=
T Consensus 18 vlCgVClknE~KYkCPRCl-~rtCsLeCskkHK 49 (390)
T KOG2858|consen 18 VLCGVCLKNEPKYKCPRCL-ARTCSLECSKKHK 49 (390)
T ss_pred hhhhhcccCcccccCcchh-hhheecccccccc
Confidence 479999998775 899998 5689999986544
No 63
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.68 E-value=9.4 Score=31.64 Aligned_cols=28 Identities=36% Similarity=1.041 Sum_probs=22.5
Q ss_pred ccccccccccc--cccccCC-Cceecchhhh
Q 001772 101 QLCARCFAPAT--TRCSRCK-SVRYCSGKCQ 128 (1015)
Q Consensus 101 ~~C~~Cg~~~~--~~Cs~Ck-~v~YCs~~CQ 128 (1015)
.+|.+|+++-. ++-.+|- .|+|||..|.
T Consensus 13 KICpvCqRPFsWRkKW~~cWDeVKyCSeRCr 43 (54)
T COG4338 13 KICPVCQRPFSWRKKWARCWDEVKYCSERCR 43 (54)
T ss_pred hhhhhhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 58999998655 5677775 7899999887
No 64
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=22.21 E-value=53 Score=41.06 Aligned_cols=38 Identities=37% Similarity=0.631 Sum_probs=28.6
Q ss_pred cccccc----cccccccccCC-------CceecchhhhhhhchHhhHHhc
Q 001772 102 LCARCF----APATTRCSRCK-------SVRYCSGKCQIIHWRQVHKQEC 140 (1015)
Q Consensus 102 ~C~~Cg----~~~~~~Cs~Ck-------~v~YCs~~CQ~~dW~~~Hk~~C 140 (1015)
.|..|. +++.+.|-.|. ..++|+.+|=+..|+ .||..=
T Consensus 61 ~~~~c~~h~~~~a~lqCp~C~k~~~~~~~s~fCsq~CFk~~w~-~Hk~~h 109 (606)
T PLN03144 61 KVAVCSVHPSEPATLQCVGCVKAKLPVSKSYHCSPKCFSDAWR-HHRVLH 109 (606)
T ss_pred cceeEeecCCCcccccCccchhcCCCcCcceeeCHHHHHHHHH-HHHHHH
Confidence 466665 35556777775 267999999999998 598765
No 65
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=20.86 E-value=43 Score=25.15 Aligned_cols=22 Identities=41% Similarity=1.061 Sum_probs=12.6
Q ss_pred ccccccccccc-------cccccCCCcee
Q 001772 101 QLCARCFAPAT-------TRCSRCKSVRY 122 (1015)
Q Consensus 101 ~~C~~Cg~~~~-------~~Cs~Ck~v~Y 122 (1015)
+.|..||.+.. ++|..|....|
T Consensus 4 rfC~~CG~~t~~~~~g~~r~C~~Cg~~~y 32 (32)
T PF09297_consen 4 RFCGRCGAPTKPAPGGWARRCPSCGHEHY 32 (32)
T ss_dssp SB-TTT--BEEE-SSSS-EEESSSS-EE-
T ss_pred cccCcCCccccCCCCcCEeECCCCcCEeC
Confidence 57999997543 58988887665
No 66
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=20.73 E-value=37 Score=39.79 Aligned_cols=33 Identities=30% Similarity=0.431 Sum_probs=29.5
Q ss_pred CCCcccccCCCccchHHHHHHHhcCHHHHHHHH
Q 001772 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLL 507 (1015)
Q Consensus 475 ~~p~GL~NlGNTCYlNSVLQ~L~sip~fr~~Ll 507 (1015)
..|+|+.|.||-|.+++..|.+.+..++...+-
T Consensus 176 ~t~~~~i~~~n~~n~~s~~e~~~~~~~~~~~~g 208 (420)
T KOG1871|consen 176 FTPRGLINNGNLCNLDSTEEAGLSESSGVQLLG 208 (420)
T ss_pred ccccccccccccccccchhhcccccCchhhhcC
Confidence 568999999999999999999999988887653
Done!