Query 001773
Match_columns 1015
No_of_seqs 268 out of 291
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 09:00:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001773.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001773hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05911 DUF869: Plant protein 100.0 3E-150 7E-155 1338.9 79.9 766 22-905 1-769 (769)
2 PF05911 DUF869: Plant protein 99.5 1.6E-09 3.5E-14 132.4 52.9 36 503-538 430-465 (769)
3 TIGR02169 SMC_prok_A chromosom 99.4 1.7E-06 3.6E-11 110.8 73.6 50 286-335 450-499 (1164)
4 TIGR02169 SMC_prok_A chromosom 99.3 3.2E-06 7E-11 108.2 64.7 108 117-224 255-363 (1164)
5 KOG0996 Structural maintenance 99.2 9.5E-06 2.1E-10 101.0 57.7 132 729-861 774-908 (1293)
6 TIGR02168 SMC_prok_B chromosom 99.2 0.00012 2.5E-09 93.8 77.2 105 745-849 801-905 (1179)
7 TIGR00606 rad50 rad50. This fa 98.9 0.0013 2.8E-08 86.9 66.3 134 39-172 225-371 (1311)
8 COG1196 Smc Chromosome segrega 98.9 0.0013 2.7E-08 86.0 71.8 38 286-323 455-492 (1163)
9 KOG0161 Myosin class II heavy 98.9 0.002 4.3E-08 86.1 67.1 110 119-228 1012-1121(1930)
10 KOG0161 Myosin class II heavy 98.8 0.0026 5.7E-08 85.0 66.1 195 44-245 844-1040(1930)
11 COG1196 Smc Chromosome segrega 98.8 0.0024 5.3E-08 83.4 68.7 79 4-82 233-318 (1163)
12 PRK02224 chromosome segregatio 98.7 0.0032 7E-08 79.6 65.2 28 289-316 347-374 (880)
13 PRK02224 chromosome segregatio 98.6 0.0071 1.5E-07 76.7 70.5 95 756-850 594-693 (880)
14 KOG0964 Structural maintenance 98.6 0.0067 1.5E-07 75.4 49.6 37 70-112 188-224 (1200)
15 TIGR00606 rad50 rad50. This fa 98.5 0.023 5.1E-07 75.3 63.6 68 91-158 397-464 (1311)
16 TIGR02168 SMC_prok_B chromosom 98.4 0.023 4.9E-07 73.2 78.2 27 868-894 914-940 (1179)
17 PRK03918 chromosome segregatio 98.4 0.021 4.6E-07 72.2 71.4 15 951-965 814-828 (880)
18 KOG0250 DNA repair protein RAD 98.3 0.029 6.3E-07 71.1 56.8 60 732-791 660-719 (1074)
19 KOG4674 Uncharacterized conser 98.0 0.2 4.4E-06 67.1 65.6 186 43-228 229-471 (1822)
20 PF07888 CALCOCO1: Calcium bin 97.8 0.045 9.8E-07 65.8 33.6 169 42-210 147-317 (546)
21 PRK04778 septation ring format 97.8 0.011 2.4E-07 71.9 28.5 231 63-309 253-508 (569)
22 PF00261 Tropomyosin: Tropomyo 97.6 0.06 1.3E-06 58.6 28.8 40 36-75 27-66 (237)
23 KOG0933 Structural maintenance 97.6 0.42 9.2E-06 60.5 54.2 196 25-224 245-447 (1174)
24 PF00261 Tropomyosin: Tropomyo 97.6 0.11 2.4E-06 56.6 29.5 124 92-216 65-188 (237)
25 PF00038 Filament: Intermediat 97.5 0.2 4.4E-06 56.0 31.7 35 42-76 100-134 (312)
26 PF12128 DUF3584: Protein of u 97.5 0.88 1.9E-05 60.4 60.9 22 877-898 772-793 (1201)
27 KOG1029 Endocytic adaptor prot 97.5 0.16 3.4E-06 62.4 30.7 138 78-227 379-516 (1118)
28 KOG0612 Rho-associated, coiled 97.4 0.36 7.9E-06 62.2 34.4 58 10-67 475-537 (1317)
29 PRK04863 mukB cell division pr 97.4 1.4 2.9E-05 59.6 67.2 99 754-852 935-1048(1486)
30 KOG0977 Nuclear envelope prote 97.3 0.8 1.7E-05 55.5 34.1 291 3-325 42-362 (546)
31 PF07888 CALCOCO1: Calcium bin 97.3 0.36 7.9E-06 58.3 30.8 41 35-75 196-236 (546)
32 PRK11637 AmiB activator; Provi 97.3 0.2 4.4E-06 58.9 28.7 53 175-227 197-249 (428)
33 PF09726 Macoilin: Transmembra 97.1 0.33 7.1E-06 60.7 30.0 144 42-193 422-576 (697)
34 KOG0977 Nuclear envelope prote 97.1 0.091 2E-06 63.3 24.0 160 14-180 148-335 (546)
35 PRK11637 AmiB activator; Provi 97.1 0.37 8E-06 56.8 28.9 79 144-222 173-251 (428)
36 PF10174 Cast: RIM-binding pro 97.1 0.23 5E-06 62.6 28.2 66 23-88 356-421 (775)
37 PHA02562 46 endonuclease subun 97.1 0.22 4.7E-06 60.0 27.5 59 147-205 336-394 (562)
38 PF12718 Tropomyosin_1: Tropom 97.1 0.11 2.4E-06 52.7 21.1 112 736-851 3-114 (143)
39 KOG0996 Structural maintenance 97.1 1.9 4.2E-05 55.8 57.7 62 2-63 347-416 (1293)
40 PF12128 DUF3584: Protein of u 97.1 2.3 5E-05 56.6 72.3 63 165-227 472-534 (1201)
41 PRK09039 hypothetical protein; 97.0 0.049 1.1E-06 62.5 20.0 68 727-794 40-107 (343)
42 KOG1003 Actin filament-coating 96.9 0.13 2.9E-06 54.4 20.5 169 734-902 5-177 (205)
43 PF14662 CCDC155: Coiled-coil 96.9 0.23 5.1E-06 52.6 22.1 164 730-895 19-191 (193)
44 KOG1029 Endocytic adaptor prot 96.9 0.22 4.7E-06 61.3 24.0 55 100-154 409-464 (1118)
45 KOG0612 Rho-associated, coiled 96.8 2.9 6.3E-05 54.4 35.0 74 45-118 479-555 (1317)
46 PHA02562 46 endonuclease subun 96.8 0.38 8.2E-06 58.0 26.5 52 109-160 230-281 (562)
47 PF08317 Spc7: Spc7 kinetochor 96.8 0.99 2.2E-05 51.5 28.2 195 48-249 78-290 (325)
48 PF00038 Filament: Intermediat 96.8 1.3 2.8E-05 49.7 30.8 77 143-222 211-287 (312)
49 KOG0994 Extracellular matrix g 96.8 1.2 2.5E-05 57.3 30.0 122 3-133 1511-1639(1758)
50 COG1579 Zn-ribbon protein, pos 96.7 0.2 4.4E-06 54.9 20.9 48 804-851 90-137 (239)
51 PF05667 DUF812: Protein of un 96.7 0.27 5.8E-06 60.4 24.2 51 40-90 323-373 (594)
52 PF10174 Cast: RIM-binding pro 96.7 3.2 6.9E-05 52.7 58.3 120 111-232 51-170 (775)
53 KOG4674 Uncharacterized conser 96.7 4.9 0.00011 54.7 69.0 71 4-88 144-214 (1822)
54 PRK04863 mukB cell division pr 96.7 4.8 0.0001 54.6 60.9 195 31-229 283-488 (1486)
55 PF12718 Tropomyosin_1: Tropom 96.7 0.36 7.8E-06 49.1 20.8 62 160-221 78-139 (143)
56 PF15070 GOLGA2L5: Putative go 96.7 1.3 2.9E-05 54.7 29.4 55 282-336 193-247 (617)
57 PF10481 CENP-F_N: Cenp-F N-te 96.6 0.66 1.4E-05 51.5 23.7 159 732-897 17-190 (307)
58 KOG0250 DNA repair protein RAD 96.6 3.9 8.4E-05 52.9 56.8 110 731-840 666-785 (1074)
59 KOG1003 Actin filament-coating 96.6 0.95 2.1E-05 48.2 23.8 156 42-216 1-156 (205)
60 PRK03918 chromosome segregatio 96.6 3.9 8.4E-05 52.2 70.8 27 289-315 457-483 (880)
61 PF09730 BicD: Microtubule-ass 96.6 3.6 7.9E-05 51.7 68.1 283 27-338 5-319 (717)
62 COG1579 Zn-ribbon protein, pos 96.5 0.31 6.8E-06 53.5 20.6 49 734-782 32-80 (239)
63 KOG4673 Transcription factor T 96.5 3 6.4E-05 51.4 29.9 163 73-249 446-619 (961)
64 KOG0980 Actin-binding protein 96.5 1 2.2E-05 56.6 26.7 54 38-91 333-390 (980)
65 PF09726 Macoilin: Transmembra 96.5 0.68 1.5E-05 58.0 25.8 116 111-227 543-659 (697)
66 PF05667 DUF812: Protein of un 96.5 0.36 7.9E-06 59.3 23.1 163 733-895 328-531 (594)
67 PRK09039 hypothetical protein; 96.5 0.21 4.5E-06 57.5 20.0 119 732-850 52-177 (343)
68 PRK04778 septation ring format 96.5 1.9 4.1E-05 52.9 29.3 15 215-229 452-466 (569)
69 PF10473 CENP-F_leu_zip: Leuci 96.5 0.3 6.4E-06 49.7 18.6 116 104-219 1-116 (140)
70 PF09730 BicD: Microtubule-ass 96.4 1.2 2.7E-05 55.7 27.2 154 738-901 32-188 (717)
71 PF05701 WEMBL: Weak chloropla 96.4 3.6 7.9E-05 50.1 39.0 140 80-224 116-262 (522)
72 PF06160 EzrA: Septation ring 96.4 3.1 6.8E-05 51.0 30.4 141 109-249 302-458 (560)
73 KOG0994 Extracellular matrix g 96.4 5.3 0.00011 51.8 43.7 16 584-599 1470-1485(1758)
74 KOG0933 Structural maintenance 96.4 5.1 0.00011 51.4 53.6 94 149-249 407-500 (1174)
75 KOG0995 Centromere-associated 96.3 3.9 8.4E-05 49.7 34.1 283 24-338 169-479 (581)
76 KOG0963 Transcription factor/C 96.3 3 6.5E-05 51.0 28.2 189 45-237 235-449 (629)
77 COG4372 Uncharacterized protei 96.2 2.9 6.3E-05 48.6 26.2 10 239-248 270-279 (499)
78 PF04849 HAP1_N: HAP1 N-termin 96.1 0.36 7.8E-06 54.6 18.8 99 790-898 207-305 (306)
79 COG4942 Membrane-bound metallo 96.1 1.1 2.4E-05 52.7 23.1 73 733-805 38-110 (420)
80 KOG0964 Structural maintenance 96.1 7.1 0.00015 50.1 56.2 110 126-235 396-505 (1200)
81 KOG0976 Rho/Rac1-interacting s 95.8 8.2 0.00018 48.5 30.5 211 26-248 261-489 (1265)
82 PRK11281 hypothetical protein; 95.7 4.4 9.5E-05 53.5 28.4 173 55-227 76-250 (1113)
83 KOG0963 Transcription factor/C 95.7 7.9 0.00017 47.6 34.5 50 283-333 309-358 (629)
84 PF04849 HAP1_N: HAP1 N-termin 95.6 4.4 9.5E-05 46.2 24.6 173 56-228 87-293 (306)
85 PF14915 CCDC144C: CCDC144C pr 95.6 5.2 0.00011 45.3 25.2 192 1-225 89-292 (305)
86 PF01576 Myosin_tail_1: Myosin 95.6 0.0032 6.9E-08 79.9 0.2 120 732-851 657-784 (859)
87 KOG0971 Microtubule-associated 95.6 6.3 0.00014 50.0 27.3 111 724-847 939-1049(1243)
88 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.5 1.3 2.9E-05 44.2 18.2 72 818-895 60-131 (132)
89 PF15619 Lebercilin: Ciliary p 95.5 2.4 5.2E-05 45.4 21.0 124 4-142 20-154 (194)
90 PF08317 Spc7: Spc7 kinetochor 95.5 0.72 1.6E-05 52.7 18.3 30 870-899 259-292 (325)
91 PF05010 TACC: Transforming ac 95.5 2.8 6.1E-05 45.3 21.5 112 787-898 74-190 (207)
92 PF13851 GAS: Growth-arrest sp 95.4 4.8 0.00011 43.2 27.2 177 49-246 13-189 (201)
93 PRK10869 recombination and rep 95.4 6.4 0.00014 48.4 26.9 119 179-338 264-386 (553)
94 TIGR01843 type_I_hlyD type I s 95.3 2.3 4.9E-05 49.1 22.0 26 869-894 246-271 (423)
95 PF15619 Lebercilin: Ciliary p 95.3 1.8 3.8E-05 46.3 19.4 32 734-765 13-44 (194)
96 PF09789 DUF2353: Uncharacteri 95.3 3.4 7.3E-05 47.4 22.6 30 281-310 193-222 (319)
97 COG3883 Uncharacterized protei 95.2 4.2 9.1E-05 45.5 22.2 153 734-889 39-217 (265)
98 PF04156 IncA: IncA protein; 95.2 1.2 2.6E-05 46.6 17.4 105 741-845 82-186 (191)
99 KOG0995 Centromere-associated 95.1 3.2 7E-05 50.4 22.2 159 725-896 324-505 (581)
100 PF09755 DUF2046: Uncharacteri 95.1 8.3 0.00018 44.0 30.6 64 44-111 33-96 (310)
101 PF08614 ATG16: Autophagy prot 95.0 0.18 3.9E-06 53.3 10.7 99 731-829 79-177 (194)
102 TIGR03185 DNA_S_dndD DNA sulfu 94.9 14 0.00029 46.3 28.4 27 40-66 225-251 (650)
103 TIGR02680 conserved hypothetic 94.9 20 0.00043 48.7 31.5 91 120-213 875-965 (1353)
104 KOG2991 Splicing regulator [RN 94.9 5.6 0.00012 44.1 21.5 215 18-237 75-318 (330)
105 PF04156 IncA: IncA protein; 94.9 1.7 3.7E-05 45.4 17.5 108 111-218 79-186 (191)
106 PF01576 Myosin_tail_1: Myosin 94.9 0.0085 1.8E-07 76.1 0.6 109 734-842 744-852 (859)
107 TIGR00634 recN DNA repair prot 94.8 7.7 0.00017 47.6 25.4 124 178-338 268-391 (563)
108 PF10473 CENP-F_leu_zip: Leuci 94.8 3.3 7.1E-05 42.3 18.3 107 737-850 7-113 (140)
109 PF06818 Fez1: Fez1; InterPro 94.7 6.2 0.00013 42.6 20.9 69 24-95 13-81 (202)
110 KOG4643 Uncharacterized coiled 94.6 20 0.00043 46.4 52.4 41 47-88 57-97 (1195)
111 PF10168 Nup88: Nuclear pore c 94.6 4.2 9.1E-05 51.4 22.9 117 731-848 541-670 (717)
112 KOG1899 LAR transmembrane tyro 94.6 3.2 6.9E-05 50.7 20.5 88 739-826 110-197 (861)
113 PF15070 GOLGA2L5: Putative go 94.6 17 0.00037 45.3 36.2 85 44-129 35-138 (617)
114 smart00787 Spc7 Spc7 kinetocho 94.4 2.2 4.7E-05 48.8 18.1 34 867-900 251-288 (312)
115 PF09728 Taxilin: Myosin-like 94.4 12 0.00026 42.9 29.2 200 5-224 105-306 (309)
116 PF07926 TPR_MLP1_2: TPR/MLP1/ 94.4 4.2 9.1E-05 40.7 18.2 31 736-766 6-36 (132)
117 PF08614 ATG16: Autophagy prot 94.4 0.31 6.8E-06 51.6 10.8 107 117-223 71-177 (194)
118 KOG0982 Centrosomal protein Nu 94.4 8.2 0.00018 45.5 22.4 104 144-249 314-417 (502)
119 KOG1899 LAR transmembrane tyro 94.3 8.9 0.00019 47.0 23.1 100 732-831 110-216 (861)
120 PF10481 CENP-F_N: Cenp-F N-te 94.3 4.7 0.0001 45.1 19.3 35 113-147 18-52 (307)
121 TIGR01843 type_I_hlyD type I s 94.2 14 0.0003 42.7 24.7 6 385-390 311-316 (423)
122 KOG0946 ER-Golgi vesicle-tethe 94.1 2.1 4.5E-05 53.6 18.1 55 738-792 662-716 (970)
123 smart00787 Spc7 Spc7 kinetocho 94.1 14 0.0003 42.5 24.2 194 49-249 74-285 (312)
124 PF13851 GAS: Growth-arrest sp 94.1 5.9 0.00013 42.6 19.7 48 733-780 34-81 (201)
125 PF12795 MscS_porin: Mechanose 94.0 7.1 0.00015 42.7 20.4 191 25-223 18-211 (240)
126 PRK11281 hypothetical protein; 93.9 3.3 7.2E-05 54.5 20.6 182 33-215 65-252 (1113)
127 PF03148 Tektin: Tektin family 93.8 9.7 0.00021 44.7 22.4 137 96-232 234-383 (384)
128 COG0497 RecN ATPase involved i 93.7 23 0.0005 43.6 26.4 88 210-338 296-387 (557)
129 PF14073 Cep57_CLD: Centrosome 93.7 4 8.7E-05 43.2 16.9 122 730-851 8-154 (178)
130 PF10186 Atg14: UV radiation r 93.6 4.7 0.0001 44.4 18.6 81 144-224 59-139 (302)
131 PF05701 WEMBL: Weak chloropla 93.6 23 0.0005 43.3 38.9 41 40-80 132-172 (522)
132 TIGR01000 bacteriocin_acc bact 93.6 16 0.00034 43.7 24.0 33 105-137 164-196 (457)
133 KOG0971 Microtubule-associated 93.5 30 0.00065 44.4 59.9 197 2-221 230-441 (1243)
134 KOG4643 Uncharacterized coiled 93.5 32 0.00069 44.7 28.4 116 109-229 484-599 (1195)
135 COG4477 EzrA Negative regulato 93.5 24 0.00051 43.1 28.9 219 108-343 304-537 (570)
136 PRK01156 chromosome segregatio 93.5 32 0.00069 44.5 68.6 84 761-848 629-712 (895)
137 KOG0979 Structural maintenance 93.3 17 0.00037 47.0 24.2 35 800-834 860-894 (1072)
138 PF05557 MAD: Mitotic checkpoi 93.2 0.28 6E-06 61.6 9.2 33 283-315 605-637 (722)
139 PF00769 ERM: Ezrin/radixin/mo 93.2 8.7 0.00019 42.5 19.5 168 731-898 10-204 (246)
140 KOG1937 Uncharacterized conser 93.0 24 0.00051 42.2 23.2 24 101-124 313-336 (521)
141 PF09787 Golgin_A5: Golgin sub 92.8 29 0.00063 42.3 29.4 177 41-229 119-320 (511)
142 PF12325 TMF_TATA_bd: TATA ele 92.8 5.4 0.00012 39.8 15.4 95 733-831 16-110 (120)
143 KOG4360 Uncharacterized coiled 92.8 2.4 5.1E-05 50.7 15.0 107 804-920 220-326 (596)
144 TIGR03007 pepcterm_ChnLen poly 92.8 8.4 0.00018 46.1 20.3 26 729-754 164-189 (498)
145 PF06818 Fez1: Fez1; InterPro 92.7 14 0.00031 39.9 19.4 101 40-145 3-105 (202)
146 PF04111 APG6: Autophagy prote 92.7 2 4.3E-05 49.1 14.1 126 762-887 44-187 (314)
147 PF15066 CAGE1: Cancer-associa 92.6 29 0.00062 41.7 24.5 141 72-224 312-452 (527)
148 COG3883 Uncharacterized protei 92.5 10 0.00022 42.6 18.7 118 107-227 39-178 (265)
149 KOG0980 Actin-binding protein 92.4 42 0.00091 43.1 28.2 150 75-231 391-549 (980)
150 PRK01156 chromosome segregatio 92.2 45 0.00099 43.1 63.7 7 527-533 440-446 (895)
151 KOG0979 Structural maintenance 92.2 35 0.00076 44.4 24.7 41 181-221 316-356 (1072)
152 PRK12704 phosphodiesterase; Pr 92.1 14 0.00029 45.3 20.9 22 100-121 62-83 (520)
153 PF10146 zf-C4H2: Zinc finger- 92.0 4.9 0.00011 44.1 15.6 27 93-120 3-29 (230)
154 PF00769 ERM: Ezrin/radixin/mo 92.0 7.3 0.00016 43.1 17.0 111 115-225 7-117 (246)
155 PF10498 IFT57: Intra-flagella 91.9 6.5 0.00014 45.9 17.2 90 788-888 265-354 (359)
156 PF14662 CCDC155: Coiled-coil 91.8 21 0.00045 38.4 26.1 167 42-224 19-185 (193)
157 PF15254 CCDC14: Coiled-coil d 91.8 19 0.00042 45.4 21.5 152 122-317 389-541 (861)
158 PF13870 DUF4201: Domain of un 91.8 18 0.0004 37.7 19.8 23 870-892 153-175 (177)
159 PF10186 Atg14: UV radiation r 91.8 16 0.00035 40.2 19.7 22 76-97 26-47 (302)
160 TIGR01005 eps_transp_fam exopo 91.7 8.8 0.00019 48.6 19.6 59 154-216 344-402 (754)
161 TIGR03319 YmdA_YtgF conserved 91.7 21 0.00046 43.6 22.1 24 100-123 56-79 (514)
162 PF13870 DUF4201: Domain of un 91.7 15 0.00033 38.2 18.3 107 745-851 11-118 (177)
163 KOG4593 Mitotic checkpoint pro 91.7 45 0.00097 41.9 35.1 124 185-319 277-405 (716)
164 PF13514 AAA_27: AAA domain 91.6 61 0.0013 43.2 38.4 301 1-338 630-952 (1111)
165 PF04111 APG6: Autophagy prote 91.6 3.3 7.2E-05 47.3 14.3 78 143-220 45-122 (314)
166 PF15450 DUF4631: Domain of un 91.6 40 0.00086 41.1 23.4 60 169-232 455-514 (531)
167 PF10498 IFT57: Intra-flagella 91.5 6.7 0.00014 45.8 16.7 118 734-851 221-348 (359)
168 PF10212 TTKRSYEDQ: Predicted 91.4 20 0.00043 43.6 20.8 74 810-896 441-514 (518)
169 PF12325 TMF_TATA_bd: TATA ele 91.4 5.5 0.00012 39.7 13.7 89 756-844 18-109 (120)
170 TIGR03007 pepcterm_ChnLen poly 91.4 14 0.0003 44.3 19.9 27 63-89 165-191 (498)
171 KOG0999 Microtubule-associated 91.2 18 0.0004 43.9 19.8 172 737-920 90-280 (772)
172 TIGR00634 recN DNA repair prot 91.1 30 0.00065 42.6 22.7 37 38-74 168-204 (563)
173 PF13166 AAA_13: AAA domain 91.1 33 0.00071 43.0 23.5 58 190-250 417-474 (712)
174 KOG0946 ER-Golgi vesicle-tethe 91.0 57 0.0012 41.7 25.8 36 301-336 851-886 (970)
175 COG4372 Uncharacterized protei 90.9 39 0.00084 39.8 29.6 38 48-85 105-142 (499)
176 KOG0978 E3 ubiquitin ligase in 90.9 55 0.0012 41.5 32.5 135 111-245 501-638 (698)
177 PF09304 Cortex-I_coil: Cortex 90.9 13 0.00028 36.5 15.1 39 797-835 38-76 (107)
178 PF05384 DegS: Sensor protein 90.7 23 0.0005 37.0 18.0 45 733-777 27-71 (159)
179 COG5185 HEC1 Protein involved 90.4 48 0.001 39.9 29.8 128 110-237 299-433 (622)
180 COG5185 HEC1 Protein involved 90.2 15 0.00033 43.9 17.9 33 875-907 399-431 (622)
181 PF11559 ADIP: Afadin- and alp 90.0 24 0.00052 35.8 17.8 26 809-834 100-125 (151)
182 PF12072 DUF3552: Domain of un 89.9 31 0.00067 37.0 22.9 76 71-146 29-104 (201)
183 COG4942 Membrane-bound metallo 89.7 52 0.0011 39.4 31.5 36 182-217 209-244 (420)
184 COG2433 Uncharacterized conser 89.7 4.9 0.00011 49.2 13.8 97 744-851 419-517 (652)
185 PF15233 SYCE1: Synaptonemal c 89.7 12 0.00026 37.7 14.3 79 740-818 6-84 (134)
186 PF10168 Nup88: Nuclear pore c 89.5 39 0.00084 43.1 22.1 160 735-897 538-713 (717)
187 PF05010 TACC: Transforming ac 89.5 36 0.00077 37.1 26.9 31 45-75 23-53 (207)
188 KOG2129 Uncharacterized conser 89.4 35 0.00075 40.5 19.6 90 731-833 134-224 (552)
189 PRK10884 SH3 domain-containing 89.4 5.2 0.00011 43.2 12.6 22 732-753 92-113 (206)
190 KOG0804 Cytoplasmic Zn-finger 89.2 15 0.00032 43.8 16.8 51 798-848 377-427 (493)
191 KOG0243 Kinesin-like protein [ 89.2 16 0.00035 47.6 18.5 71 762-832 442-512 (1041)
192 KOG0288 WD40 repeat protein Ti 89.0 16 0.00036 43.0 16.8 81 103-183 24-104 (459)
193 PF15254 CCDC14: Coiled-coil d 88.9 22 0.00047 45.0 18.6 116 104-229 432-547 (861)
194 TIGR03185 DNA_S_dndD DNA sulfu 88.9 73 0.0016 39.9 33.5 47 202-249 389-435 (650)
195 PRK10246 exonuclease subunit S 88.9 96 0.0021 41.3 27.8 51 198-248 830-880 (1047)
196 PRK00106 hypothetical protein; 88.9 60 0.0013 40.1 22.4 11 102-112 79-89 (535)
197 PF05557 MAD: Mitotic checkpoi 88.8 0.13 2.8E-06 64.5 0.0 27 283-309 349-375 (722)
198 PF07889 DUF1664: Protein of u 88.7 10 0.00022 38.1 13.2 85 91-175 39-123 (126)
199 PF05622 HOOK: HOOK protein; 88.6 0.13 2.9E-06 64.3 0.0 68 160-227 457-525 (713)
200 KOG1937 Uncharacterized conser 88.4 33 0.00072 41.0 18.8 29 866-894 400-428 (521)
201 PF15450 DUF4631: Domain of un 88.1 73 0.0016 38.9 27.2 242 34-318 225-475 (531)
202 KOG0018 Structural maintenance 87.9 1.1E+02 0.0023 40.5 44.8 174 615-834 728-901 (1141)
203 COG1340 Uncharacterized archae 87.7 58 0.0012 37.3 24.8 44 44-87 33-76 (294)
204 PF05335 DUF745: Protein of un 87.5 32 0.0007 36.9 16.8 107 746-852 59-165 (188)
205 PF11559 ADIP: Afadin- and alp 87.3 31 0.00067 35.0 16.1 54 762-815 67-120 (151)
206 TIGR03017 EpsF chain length de 87.3 55 0.0012 38.6 20.5 27 729-755 174-200 (444)
207 TIGR01005 eps_transp_fam exopo 87.3 34 0.00074 43.4 20.0 34 55-88 190-223 (754)
208 KOG4403 Cell surface glycoprot 87.1 75 0.0016 38.0 24.2 28 732-759 251-278 (575)
209 KOG4360 Uncharacterized coiled 87.0 83 0.0018 38.4 21.1 90 131-220 202-291 (596)
210 COG4026 Uncharacterized protei 86.9 9.3 0.0002 41.7 12.3 72 765-836 132-203 (290)
211 PF10146 zf-C4H2: Zinc finger- 86.8 27 0.00059 38.5 16.3 30 821-850 71-100 (230)
212 PF08702 Fib_alpha: Fibrinogen 86.8 26 0.00055 36.1 15.1 37 813-849 93-129 (146)
213 KOG4787 Uncharacterized conser 86.7 81 0.0018 39.0 21.0 187 40-226 334-544 (852)
214 KOG0982 Centrosomal protein Nu 86.6 79 0.0017 37.8 24.3 163 59-228 250-420 (502)
215 PF06785 UPF0242: Uncharacteri 86.6 70 0.0015 37.1 20.7 78 121-198 100-177 (401)
216 KOG0243 Kinesin-like protein [ 86.5 80 0.0017 41.6 22.2 79 735-813 436-514 (1041)
217 KOG2685 Cystoskeletal protein 86.4 80 0.0017 37.6 20.4 133 100-232 265-410 (421)
218 PF12795 MscS_porin: Mechanose 86.4 56 0.0012 35.8 24.2 167 61-229 33-210 (240)
219 COG4026 Uncharacterized protei 86.3 14 0.00031 40.4 13.3 38 145-182 153-190 (290)
220 PF15290 Syntaphilin: Golgi-lo 86.3 17 0.00037 40.9 14.3 41 742-782 63-103 (305)
221 KOG2991 Splicing regulator [RN 86.0 65 0.0014 36.2 21.5 146 39-184 137-307 (330)
222 COG1382 GimC Prefoldin, chaper 85.8 18 0.0004 36.1 12.9 42 810-851 70-111 (119)
223 PF05335 DUF745: Protein of un 85.7 45 0.00098 35.8 16.8 97 735-831 69-165 (188)
224 COG0419 SbcC ATPase involved i 85.7 1.3E+02 0.0028 39.4 42.3 47 181-227 387-433 (908)
225 TIGR03017 EpsF chain length de 85.6 83 0.0018 37.1 22.8 27 62-88 174-200 (444)
226 COG2433 Uncharacterized conser 85.2 16 0.00034 45.1 14.4 63 790-852 444-509 (652)
227 PRK03947 prefoldin subunit alp 85.2 27 0.00059 35.0 14.3 45 801-845 92-136 (140)
228 cd00632 Prefoldin_beta Prefold 85.1 26 0.00057 33.6 13.5 42 803-844 63-104 (105)
229 PRK10929 putative mechanosensi 85.1 1.5E+02 0.0033 39.7 32.9 36 34-69 51-89 (1109)
230 COG1382 GimC Prefoldin, chaper 84.9 20 0.00043 35.9 12.7 95 45-145 13-109 (119)
231 PF11932 DUF3450: Protein of u 84.5 32 0.00069 37.9 15.7 20 416-435 182-201 (251)
232 KOG0972 Huntingtin interacting 84.4 44 0.00096 38.0 16.4 94 788-892 272-365 (384)
233 COG3074 Uncharacterized protei 84.3 16 0.00035 33.2 10.6 55 136-190 20-74 (79)
234 PF07106 TBPIP: Tat binding pr 84.3 19 0.00041 37.3 13.1 63 731-793 70-134 (169)
235 KOG0804 Cytoplasmic Zn-finger 84.2 47 0.001 39.8 17.3 19 208-226 432-450 (493)
236 PF03962 Mnd1: Mnd1 family; I 84.2 29 0.00063 37.0 14.6 66 168-236 109-174 (188)
237 KOG4438 Centromere-associated 83.8 84 0.0018 37.6 19.0 120 732-851 144-282 (446)
238 PF09728 Taxilin: Myosin-like 83.6 91 0.002 35.9 32.5 58 169-226 209-266 (309)
239 KOG0239 Kinesin (KAR3 subfamil 83.5 1.4E+02 0.003 38.0 23.2 72 157-228 243-317 (670)
240 PF09787 Golgin_A5: Golgin sub 83.5 1.2E+02 0.0026 37.2 28.6 50 289-338 342-397 (511)
241 PF05483 SCP-1: Synaptonemal c 83.5 1.4E+02 0.003 37.9 36.2 283 1-340 375-657 (786)
242 PF10234 Cluap1: Clusterin-ass 83.4 87 0.0019 35.5 19.3 86 144-229 179-264 (267)
243 PF14197 Cep57_CLD_2: Centroso 83.4 13 0.00028 33.7 9.8 65 766-830 3-67 (69)
244 PF02994 Transposase_22: L1 tr 83.2 3.1 6.8E-05 48.5 7.6 93 757-849 94-190 (370)
245 KOG2129 Uncharacterized conser 82.8 1.1E+02 0.0025 36.4 20.5 59 50-108 48-116 (552)
246 PF05266 DUF724: Protein of un 82.8 40 0.00086 36.2 14.9 6 720-725 85-90 (190)
247 PF05384 DegS: Sensor protein 82.6 67 0.0015 33.7 19.3 60 166-225 74-133 (159)
248 PF13166 AAA_13: AAA domain 82.6 1.4E+02 0.0031 37.4 26.0 11 375-385 533-543 (712)
249 TIGR01000 bacteriocin_acc bact 82.3 1.2E+02 0.0026 36.3 23.4 21 202-222 289-309 (457)
250 PRK03947 prefoldin subunit alp 82.1 46 0.001 33.4 14.4 27 118-144 11-37 (140)
251 PF12329 TMF_DNA_bd: TATA elem 82.1 21 0.00046 32.6 10.8 60 116-175 8-67 (74)
252 PF06785 UPF0242: Uncharacteri 81.9 73 0.0016 37.0 17.0 62 123-184 95-156 (401)
253 PF04871 Uso1_p115_C: Uso1 / p 81.7 59 0.0013 33.1 15.0 33 820-852 80-112 (136)
254 PF08826 DMPK_coil: DMPK coile 81.5 18 0.0004 32.1 9.8 47 784-830 13-59 (61)
255 KOG3647 Predicted coiled-coil 81.3 70 0.0015 36.1 16.3 19 72-90 52-70 (338)
256 PF09789 DUF2353: Uncharacteri 81.2 1.1E+02 0.0025 35.4 22.9 35 302-336 283-317 (319)
257 TIGR02338 gimC_beta prefoldin, 81.2 37 0.0008 33.0 12.9 35 807-841 71-105 (110)
258 PF14915 CCDC144C: CCDC144C pr 81.1 1.1E+02 0.0024 35.1 28.1 150 69-223 98-261 (305)
259 COG1842 PspA Phage shock prote 81.1 93 0.002 34.3 19.9 132 742-888 12-155 (225)
260 KOG0249 LAR-interacting protei 80.5 72 0.0016 40.3 17.5 28 62-89 87-114 (916)
261 PF11932 DUF3450: Protein of u 80.2 53 0.0011 36.2 15.4 81 145-235 46-126 (251)
262 TIGR02338 gimC_beta prefoldin, 80.0 43 0.00092 32.5 12.9 36 813-848 70-105 (110)
263 KOG1853 LIS1-interacting prote 79.8 1.1E+02 0.0024 34.3 23.5 31 817-847 91-121 (333)
264 KOG0249 LAR-interacting protei 79.7 1.2E+02 0.0027 38.4 19.1 20 993-1012 893-912 (916)
265 PRK10929 putative mechanosensi 79.5 2.4E+02 0.0052 38.0 30.1 16 382-397 441-456 (1109)
266 PF15456 Uds1: Up-regulated Du 79.5 35 0.00076 34.3 12.3 43 730-773 19-61 (124)
267 COG3074 Uncharacterized protei 79.4 25 0.00054 32.1 10.0 52 118-169 23-74 (79)
268 PLN02939 transferase, transfer 79.3 2.3E+02 0.0049 37.7 24.7 116 54-185 158-280 (977)
269 PF15397 DUF4618: Domain of un 79.2 1.2E+02 0.0025 34.3 18.9 17 3-19 16-32 (258)
270 PF07106 TBPIP: Tat binding pr 79.1 29 0.00063 35.9 12.3 6 616-621 21-26 (169)
271 KOG4809 Rab6 GTPase-interactin 79.0 1.7E+02 0.0037 36.2 19.6 61 54-115 333-393 (654)
272 PF10212 TTKRSYEDQ: Predicted 78.7 50 0.0011 40.4 15.4 100 728-830 415-514 (518)
273 KOG2685 Cystoskeletal protein 78.7 1.1E+02 0.0025 36.4 17.8 91 758-848 275-389 (421)
274 KOG1962 B-cell receptor-associ 78.6 30 0.00064 37.9 12.3 65 787-851 149-213 (216)
275 PF05622 HOOK: HOOK protein; 78.4 0.91 2E-05 57.0 1.2 175 122-318 181-359 (713)
276 PF07445 priB_priC: Primosomal 78.3 82 0.0018 33.3 15.3 33 864-896 140-172 (173)
277 TIGR01010 BexC_CtrB_KpsE polys 77.9 45 0.00098 38.5 14.6 26 870-895 293-318 (362)
278 PRK09841 cryptic autophosphory 77.8 50 0.0011 42.0 16.1 33 743-775 263-295 (726)
279 PF01920 Prefoldin_2: Prefoldi 77.6 51 0.0011 30.9 12.5 38 812-849 64-101 (106)
280 PF03962 Mnd1: Mnd1 family; I 77.3 26 0.00057 37.4 11.5 78 163-247 70-147 (188)
281 PF09738 DUF2051: Double stran 77.2 48 0.001 38.1 14.1 138 747-898 84-248 (302)
282 PF04582 Reo_sigmaC: Reovirus 76.8 4.1 8.9E-05 46.8 5.6 24 870-893 134-157 (326)
283 PF10205 KLRAQ: Predicted coil 76.2 48 0.001 32.4 11.7 67 120-186 5-71 (102)
284 PF04012 PspA_IM30: PspA/IM30 76.1 1.2E+02 0.0025 32.7 23.5 68 8-78 10-77 (221)
285 COG1730 GIM5 Predicted prefold 75.9 1E+02 0.0022 31.9 14.8 43 740-782 6-48 (145)
286 KOG0288 WD40 repeat protein Ti 75.9 1.3E+02 0.0028 36.0 17.1 31 103-133 10-40 (459)
287 PF04012 PspA_IM30: PspA/IM30 75.8 1.2E+02 0.0026 32.6 23.9 29 199-227 160-188 (221)
288 PRK09343 prefoldin subunit bet 75.8 71 0.0015 31.7 13.3 40 738-777 5-44 (121)
289 PF12329 TMF_DNA_bd: TATA elem 75.5 34 0.00074 31.3 10.1 22 70-91 2-23 (74)
290 KOG0240 Kinesin (SMY1 subfamil 75.4 2.2E+02 0.0048 35.5 22.1 37 40-76 336-372 (607)
291 PF09738 DUF2051: Double stran 75.1 58 0.0013 37.4 14.1 83 767-849 83-165 (302)
292 KOG0976 Rho/Rac1-interacting s 75.0 2.6E+02 0.0056 36.1 56.4 90 103-192 96-185 (1265)
293 PF08172 CASP_C: CASP C termin 75.0 34 0.00073 38.2 12.0 50 795-844 85-134 (248)
294 TIGR02231 conserved hypothetic 74.8 31 0.00067 42.0 12.7 44 181-224 129-172 (525)
295 KOG2751 Beclin-like protein [S 74.7 1.1E+02 0.0024 36.7 16.3 54 167-220 202-255 (447)
296 PRK15422 septal ring assembly 74.6 54 0.0012 30.7 11.0 25 162-186 46-70 (79)
297 cd00632 Prefoldin_beta Prefold 74.3 79 0.0017 30.4 12.9 31 817-847 70-100 (105)
298 PF14992 TMCO5: TMCO5 family 73.8 67 0.0014 36.5 13.9 109 109-225 59-171 (280)
299 COG1340 Uncharacterized archae 73.7 1.8E+02 0.0038 33.5 29.1 46 45-90 55-100 (294)
300 PRK10869 recombination and rep 73.6 2.4E+02 0.0051 35.0 24.3 39 35-73 161-199 (553)
301 PF08647 BRE1: BRE1 E3 ubiquit 73.5 86 0.0019 29.9 13.5 28 147-174 30-57 (96)
302 PF07889 DUF1664: Protein of u 73.5 74 0.0016 32.2 12.7 38 807-844 86-123 (126)
303 KOG4673 Transcription factor T 73.4 2.7E+02 0.0058 35.5 46.8 45 186-230 449-493 (961)
304 PRK09343 prefoldin subunit bet 73.0 1E+02 0.0022 30.6 15.0 41 734-774 8-48 (121)
305 PF06008 Laminin_I: Laminin Do 73.0 1.6E+02 0.0034 32.7 25.7 38 50-87 78-115 (264)
306 PF15294 Leu_zip: Leucine zipp 72.9 1.8E+02 0.0039 33.3 21.1 22 301-322 256-277 (278)
307 PF14712 Snapin_Pallidin: Snap 72.8 56 0.0012 30.3 11.2 78 766-843 12-90 (92)
308 PF08647 BRE1: BRE1 E3 ubiquit 72.4 91 0.002 29.8 12.6 43 740-782 3-45 (96)
309 KOG0239 Kinesin (KAR3 subfamil 72.2 1.5E+02 0.0033 37.7 17.9 107 798-907 222-331 (670)
310 PRK09841 cryptic autophosphory 71.5 75 0.0016 40.5 15.4 28 729-756 270-297 (726)
311 PRK11519 tyrosine kinase; Prov 71.1 67 0.0015 40.8 14.8 28 729-756 270-297 (719)
312 PF04582 Reo_sigmaC: Reovirus 70.9 7.7 0.00017 44.6 5.9 95 758-852 60-154 (326)
313 PF05266 DUF724: Protein of un 70.6 1.1E+02 0.0024 32.9 14.2 87 143-229 98-184 (190)
314 PRK10361 DNA recombination pro 69.8 2.7E+02 0.0059 34.1 26.8 24 55-78 39-62 (475)
315 PF02994 Transposase_22: L1 tr 69.4 10 0.00023 44.3 6.8 92 761-852 91-186 (370)
316 PF12777 MT: Microtubule-bindi 69.3 18 0.00039 41.8 8.6 53 739-791 220-272 (344)
317 KOG1103 Predicted coiled-coil 69.2 2.4E+02 0.0051 33.1 20.5 54 172-225 241-294 (561)
318 PRK04406 hypothetical protein; 68.8 34 0.00073 31.5 8.5 47 119-165 10-56 (75)
319 PF12777 MT: Microtubule-bindi 68.7 18 0.0004 41.7 8.5 52 119-170 234-285 (344)
320 PRK12705 hypothetical protein; 68.2 3E+02 0.0065 34.0 23.9 51 87-137 44-94 (508)
321 PF02601 Exonuc_VII_L: Exonucl 68.1 2.2E+02 0.0047 32.3 17.4 52 30-81 135-187 (319)
322 KOG0244 Kinesin-like protein [ 68.0 3.8E+02 0.0083 35.2 20.0 69 54-134 469-537 (913)
323 PF04102 SlyX: SlyX; InterPro 68.0 28 0.0006 31.3 7.7 50 119-168 3-52 (69)
324 PF15397 DUF4618: Domain of un 67.9 2.2E+02 0.0047 32.3 25.6 99 48-147 9-108 (258)
325 PF09755 DUF2046: Uncharacteri 67.7 2.4E+02 0.0052 32.7 32.0 171 45-226 27-200 (310)
326 KOG4593 Mitotic checkpoint pro 67.6 3.5E+02 0.0076 34.5 56.2 24 829-852 557-580 (716)
327 PF09731 Mitofilin: Mitochondr 66.9 3.2E+02 0.0069 33.8 26.1 53 64-116 249-302 (582)
328 KOG0978 E3 ubiquitin ligase in 66.8 3.7E+02 0.008 34.5 47.7 58 794-851 564-621 (698)
329 TIGR02231 conserved hypothetic 66.5 59 0.0013 39.6 12.6 34 733-766 71-104 (525)
330 PF10267 Tmemb_cc2: Predicted 66.4 2.3E+02 0.0051 33.9 16.8 41 177-217 277-318 (395)
331 TIGR02977 phageshock_pspA phag 66.3 2E+02 0.0043 31.2 22.2 40 125-164 104-143 (219)
332 PF10046 BLOC1_2: Biogenesis o 66.0 1.3E+02 0.0028 28.9 14.3 30 818-847 67-96 (99)
333 COG5283 Phage-related tail pro 65.7 3.4E+02 0.0073 36.7 19.1 117 733-849 22-138 (1213)
334 PF14988 DUF4515: Domain of un 65.3 2.1E+02 0.0046 31.1 21.4 96 68-171 6-101 (206)
335 COG3352 FlaC Putative archaeal 65.1 60 0.0013 33.8 10.2 67 732-798 43-109 (157)
336 PF15290 Syntaphilin: Golgi-lo 65.1 1.1E+02 0.0024 34.9 13.0 29 735-763 70-98 (305)
337 PF14197 Cep57_CLD_2: Centroso 64.5 83 0.0018 28.6 10.0 52 122-173 7-58 (69)
338 KOG4603 TBP-1 interacting prot 64.4 2E+02 0.0044 30.7 13.9 68 730-804 76-145 (201)
339 TIGR02449 conserved hypothetic 64.4 58 0.0013 29.4 8.8 59 110-168 4-62 (65)
340 PRK14011 prefoldin subunit alp 63.8 1.5E+02 0.0033 30.5 13.0 43 740-782 3-45 (144)
341 KOG2751 Beclin-like protein [S 63.7 1.8E+02 0.0038 35.1 15.0 80 119-198 182-261 (447)
342 PF09731 Mitofilin: Mitochondr 63.1 3.7E+02 0.008 33.2 29.9 63 183-248 378-440 (582)
343 KOG0972 Huntingtin interacting 63.0 2.2E+02 0.0049 32.7 14.9 79 773-851 271-355 (384)
344 PLN02939 transferase, transfer 63.0 4.4E+02 0.0096 35.1 19.6 118 732-849 155-289 (977)
345 KOG0962 DNA repair protein RAD 63.0 5.5E+02 0.012 35.2 55.5 171 65-246 267-449 (1294)
346 PF11180 DUF2968: Protein of u 62.9 1.8E+02 0.0038 31.6 13.6 41 809-849 146-186 (192)
347 PF05700 BCAS2: Breast carcino 62.9 2.3E+02 0.0051 30.9 17.5 66 72-137 99-167 (221)
348 PF15066 CAGE1: Cancer-associa 62.7 3.6E+02 0.0078 32.9 23.4 50 100-149 384-433 (527)
349 KOG4302 Microtubule-associated 62.6 4.3E+02 0.0092 33.8 24.1 136 93-228 48-198 (660)
350 PRK02119 hypothetical protein; 62.5 50 0.0011 30.2 8.3 47 119-165 8-54 (73)
351 PRK10698 phage shock protein P 62.4 2.4E+02 0.0053 30.9 22.8 47 122-168 101-147 (222)
352 PF02841 GBP_C: Guanylate-bind 62.3 2.4E+02 0.0052 32.0 15.6 120 54-175 178-297 (297)
353 PF02050 FliJ: Flagellar FliJ 61.9 1.4E+02 0.003 27.8 16.8 33 808-840 57-89 (123)
354 PF05103 DivIVA: DivIVA protei 61.7 5.5 0.00012 39.0 2.2 46 737-782 22-67 (131)
355 KOG4302 Microtubule-associated 61.5 4.4E+02 0.0096 33.6 25.0 128 120-249 160-326 (660)
356 cd00176 SPEC Spectrin repeats, 61.2 1.9E+02 0.0041 29.2 16.8 36 90-125 74-109 (213)
357 PRK10093 primosomal replicatio 61.1 1.7E+02 0.0036 31.3 12.9 65 828-896 106-170 (171)
358 PRK02793 phi X174 lysis protei 60.9 53 0.0011 30.0 8.1 48 119-166 7-54 (72)
359 TIGR00998 8a0101 efflux pump m 60.6 2E+02 0.0043 32.4 14.7 51 742-792 82-132 (334)
360 PF14712 Snapin_Pallidin: Snap 60.6 1.4E+02 0.003 27.8 11.2 40 65-105 6-45 (92)
361 PRK02119 hypothetical protein; 60.3 51 0.0011 30.1 8.0 52 800-851 6-57 (73)
362 PRK11519 tyrosine kinase; Prov 60.0 1.5E+02 0.0032 37.8 14.8 31 745-775 265-295 (719)
363 PF10267 Tmemb_cc2: Predicted 59.8 2.5E+02 0.0053 33.7 15.5 26 736-761 215-240 (395)
364 PF15556 Zwint: ZW10 interacto 59.7 2.7E+02 0.0058 30.5 21.5 142 90-243 58-207 (252)
365 PF05278 PEARLI-4: Arabidopsis 59.7 2.1E+02 0.0045 32.6 14.1 8 421-428 61-68 (269)
366 KOG3809 Microtubule-binding pr 59.5 1.3E+02 0.0028 36.2 12.8 41 46-86 448-488 (583)
367 PF06160 EzrA: Septation ring 59.4 4.4E+02 0.0094 32.8 38.2 54 285-338 380-433 (560)
368 PF08172 CASP_C: CASP C termin 59.2 1.5E+02 0.0032 33.2 12.9 32 751-782 3-34 (248)
369 PF04102 SlyX: SlyX; InterPro 59.1 55 0.0012 29.4 7.9 45 738-782 2-46 (69)
370 COG1730 GIM5 Predicted prefold 58.8 2.3E+02 0.005 29.4 14.5 30 120-149 13-42 (145)
371 PF06705 SF-assemblin: SF-asse 58.5 2.9E+02 0.0062 30.5 23.4 26 60-85 93-118 (247)
372 KOG0240 Kinesin (SMY1 subfamil 58.3 4.7E+02 0.01 32.8 20.0 166 733-898 421-601 (607)
373 PRK00736 hypothetical protein; 58.2 60 0.0013 29.3 7.9 44 122-165 7-50 (68)
374 KOG0999 Microtubule-associated 58.1 4.6E+02 0.01 32.7 34.4 56 281-336 315-370 (772)
375 PF15456 Uds1: Up-regulated Du 58.0 96 0.0021 31.2 10.2 86 810-896 22-108 (124)
376 COG4694 Uncharacterized protei 57.9 4.2E+02 0.009 33.2 16.9 65 787-852 437-501 (758)
377 PF15294 Leu_zip: Leucine zipp 57.5 2.5E+02 0.0054 32.1 14.3 108 46-162 61-174 (278)
378 PRK00846 hypothetical protein; 57.1 68 0.0015 29.9 8.2 49 119-167 12-60 (77)
379 PRK10476 multidrug resistance 56.9 3.5E+02 0.0076 31.0 17.7 19 734-752 87-105 (346)
380 PRK04325 hypothetical protein; 56.8 67 0.0014 29.5 8.1 44 122-165 11-54 (74)
381 PRK02793 phi X174 lysis protei 56.7 65 0.0014 29.4 8.0 51 801-851 6-56 (72)
382 PF04899 MbeD_MobD: MbeD/MobD 56.4 1.4E+02 0.0031 27.3 10.0 54 93-146 15-68 (70)
383 PRK00295 hypothetical protein; 56.3 75 0.0016 28.7 8.2 43 123-165 8-50 (68)
384 KOG1962 B-cell receptor-associ 55.9 1.3E+02 0.0028 33.2 11.4 59 167-225 149-207 (216)
385 PF15358 TSKS: Testis-specific 55.8 1.5E+02 0.0032 35.5 12.4 59 790-848 154-212 (558)
386 PF10234 Cluap1: Clusterin-ass 55.3 3.6E+02 0.0079 30.7 20.1 20 107-126 163-182 (267)
387 PF07989 Microtub_assoc: Micro 55.2 1.1E+02 0.0023 28.3 9.1 71 763-839 2-72 (75)
388 PRK00736 hypothetical protein; 55.0 65 0.0014 29.0 7.6 49 803-851 5-53 (68)
389 COG4487 Uncharacterized protei 55.0 4.7E+02 0.01 31.8 20.5 152 744-898 39-206 (438)
390 PF08581 Tup_N: Tup N-terminal 54.4 1.9E+02 0.0041 27.1 12.1 52 797-851 26-77 (79)
391 PRK04406 hypothetical protein; 54.4 93 0.002 28.7 8.6 34 155-188 11-44 (75)
392 KOG4603 TBP-1 interacting prot 53.6 3.1E+02 0.0067 29.4 14.6 70 121-195 80-149 (201)
393 PF10211 Ax_dynein_light: Axon 53.3 3.1E+02 0.0068 29.3 15.9 102 749-850 86-189 (189)
394 PRK13729 conjugal transfer pil 53.2 50 0.0011 40.0 8.5 21 762-782 70-90 (475)
395 KOG4552 Vitamin-D-receptor int 52.8 3.5E+02 0.0076 29.8 18.5 12 896-907 146-157 (272)
396 PRK04325 hypothetical protein; 52.8 82 0.0018 28.9 8.0 50 802-851 8-57 (74)
397 PRK03598 putative efflux pump 52.5 4E+02 0.0086 30.3 15.6 8 655-662 20-27 (331)
398 KOG3501 Molecular chaperone Pr 52.1 2.5E+02 0.0054 27.8 14.3 99 749-847 5-111 (114)
399 PF09744 Jnk-SapK_ap_N: JNK_SA 52.0 3.1E+02 0.0067 28.8 14.7 64 152-215 86-149 (158)
400 KOG4807 F-actin binding protei 51.7 4.9E+02 0.011 31.1 29.0 113 2-117 244-378 (593)
401 KOG3433 Protein involved in me 51.5 2.9E+02 0.0064 29.8 12.7 28 759-786 86-113 (203)
402 TIGR02449 conserved hypothetic 51.4 1.1E+02 0.0024 27.7 8.4 35 157-191 9-43 (65)
403 KOG0998 Synaptic vesicle prote 51.2 1.7E+02 0.0037 38.2 13.5 79 769-847 485-563 (847)
404 COG4717 Uncharacterized conser 51.2 7.1E+02 0.015 32.8 27.2 107 31-137 550-658 (984)
405 PRK10476 multidrug resistance 51.1 4.3E+02 0.0093 30.3 16.4 56 737-792 83-138 (346)
406 KOG0992 Uncharacterized conser 51.1 5.7E+02 0.012 31.7 28.3 29 285-320 475-503 (613)
407 TIGR03495 phage_LysB phage lys 50.7 3E+02 0.0065 28.3 12.8 42 191-232 62-103 (135)
408 PF14992 TMCO5: TMCO5 family 50.6 4.4E+02 0.0096 30.2 16.9 22 876-898 161-182 (280)
409 smart00502 BBC B-Box C-termina 50.5 2.2E+02 0.0049 26.8 15.0 37 50-86 5-41 (127)
410 PRK00846 hypothetical protein; 50.4 1E+02 0.0022 28.8 8.2 46 737-782 10-55 (77)
411 KOG0018 Structural maintenance 50.3 7.9E+02 0.017 33.1 55.6 108 730-848 649-756 (1141)
412 PF14739 DUF4472: Domain of un 49.9 2.7E+02 0.0059 27.6 13.4 92 118-212 8-99 (108)
413 cd00890 Prefoldin Prefoldin is 49.9 1.9E+02 0.0042 28.0 10.8 37 813-849 90-126 (129)
414 KOG2264 Exostosin EXT1L [Signa 49.8 1.1E+02 0.0023 38.0 10.3 37 745-781 91-127 (907)
415 PF05529 Bap31: B-cell recepto 49.6 1.2E+02 0.0026 32.0 10.0 29 752-780 116-144 (192)
416 smart00502 BBC B-Box C-termina 49.6 2.3E+02 0.005 26.7 15.7 36 747-782 7-42 (127)
417 COG3096 MukB Uncharacterized p 49.4 7.1E+02 0.015 32.3 25.0 129 106-237 984-1120(1480)
418 KOG2196 Nuclear porin [Nuclear 48.9 4.4E+02 0.0095 29.7 17.3 114 114-227 86-208 (254)
419 KOG4657 Uncharacterized conser 48.8 4.2E+02 0.0092 29.5 18.3 125 87-215 25-149 (246)
420 PF12761 End3: Actin cytoskele 48.7 80 0.0017 34.2 8.4 30 288-317 164-193 (195)
421 TIGR02971 heterocyst_DevB ABC 48.7 4.4E+02 0.0096 29.7 19.7 25 870-894 180-204 (327)
422 KOG3850 Predicted membrane pro 48.5 2.9E+02 0.0063 32.9 13.2 19 875-893 352-370 (455)
423 KOG1760 Molecular chaperone Pr 48.3 2.5E+02 0.0055 28.5 11.1 35 814-848 85-119 (131)
424 PRK00295 hypothetical protein; 48.3 1.2E+02 0.0025 27.5 8.1 35 157-191 7-41 (68)
425 PLN03229 acetyl-coenzyme A car 48.1 7.4E+02 0.016 32.1 19.1 14 44-57 435-448 (762)
426 PF09486 HrpB7: Bacterial type 47.9 3.6E+02 0.0078 28.4 18.6 106 63-176 26-142 (158)
427 cd00890 Prefoldin Prefoldin is 47.8 2.7E+02 0.0058 27.0 12.6 32 810-841 94-125 (129)
428 KOG3215 Uncharacterized conser 47.6 4.2E+02 0.0091 29.2 17.3 96 20-134 29-124 (222)
429 cd00176 SPEC Spectrin repeats, 47.5 3.1E+02 0.0068 27.6 17.5 11 25-35 38-48 (213)
430 PF08657 DASH_Spc34: DASH comp 47.3 79 0.0017 35.6 8.5 82 814-895 177-258 (259)
431 PF04899 MbeD_MobD: MbeD/MobD 47.2 2.3E+02 0.005 26.0 9.9 41 787-827 19-59 (70)
432 KOG4687 Uncharacterized coiled 47.2 4.9E+02 0.011 29.8 14.5 105 120-224 9-124 (389)
433 KOG2264 Exostosin EXT1L [Signa 46.8 1.4E+02 0.003 37.0 10.7 14 420-433 255-268 (907)
434 PRK00409 recombination and DNA 46.4 5.9E+02 0.013 33.1 17.1 20 585-604 389-408 (782)
435 COG3096 MukB Uncharacterized p 46.4 7.9E+02 0.017 31.9 51.3 102 797-898 992-1109(1480)
436 TIGR03752 conj_TIGR03752 integ 46.2 1.9E+02 0.0042 35.2 11.9 27 756-782 61-87 (472)
437 PF04949 Transcrip_act: Transc 46.1 3.8E+02 0.0081 28.1 16.9 44 47-90 33-76 (159)
438 PF10805 DUF2730: Protein of u 46.0 1.6E+02 0.0035 28.6 9.4 54 729-782 31-86 (106)
439 PF08826 DMPK_coil: DMPK coile 46.0 2.2E+02 0.0048 25.5 10.0 42 147-188 17-58 (61)
440 PLN03188 kinesin-12 family pro 45.9 9.8E+02 0.021 32.9 22.6 155 40-201 1056-1254(1320)
441 COG2900 SlyX Uncharacterized p 45.8 1.3E+02 0.0029 27.7 8.0 51 118-168 6-56 (72)
442 PF14817 HAUS5: HAUS augmin-li 45.8 3.6E+02 0.0077 34.3 14.5 87 145-231 83-169 (632)
443 PF15035 Rootletin: Ciliary ro 45.7 4.1E+02 0.0089 28.5 19.3 88 156-249 82-180 (182)
444 KOG1265 Phospholipase C [Lipid 45.6 2.8E+02 0.0061 36.3 13.4 105 31-142 1070-1179(1189)
445 PF07798 DUF1640: Protein of u 45.0 3.9E+02 0.0085 28.1 20.1 18 39-56 15-34 (177)
446 KOG4809 Rab6 GTPase-interactin 44.6 7.3E+02 0.016 31.1 27.2 190 109-322 327-516 (654)
447 PF10304 DUF2411: Domain of un 44.5 22 0.00048 28.3 2.6 21 20-40 16-36 (36)
448 PRK10361 DNA recombination pro 44.0 7E+02 0.015 30.7 25.6 15 233-247 203-217 (475)
449 PF12761 End3: Actin cytoskele 44.0 3.2E+02 0.0069 29.8 11.9 23 736-758 99-121 (195)
450 TIGR01010 BexC_CtrB_KpsE polys 43.9 5.7E+02 0.012 29.6 19.3 9 118-126 189-197 (362)
451 PF10046 BLOC1_2: Biogenesis o 43.6 3E+02 0.0066 26.4 13.1 33 810-842 66-98 (99)
452 KOG2629 Peroxisomal membrane a 43.6 1.8E+02 0.0039 33.4 10.4 64 162-235 136-201 (300)
453 TIGR00293 prefoldin, archaeal 42.7 1.7E+02 0.0036 28.8 9.1 21 755-775 14-34 (126)
454 PF06810 Phage_GP20: Phage min 42.6 1.6E+02 0.0034 30.7 9.2 23 885-907 118-140 (155)
455 PRK10246 exonuclease subunit S 42.5 1E+03 0.022 32.1 37.8 28 289-316 827-854 (1047)
456 PF05377 FlaC_arch: Flagella a 42.3 73 0.0016 28.0 5.6 35 808-842 5-39 (55)
457 TIGR01069 mutS2 MutS2 family p 42.3 6.6E+02 0.014 32.6 16.6 9 995-1003 693-701 (771)
458 PF08580 KAR9: Yeast cortical 42.1 8.7E+02 0.019 31.2 34.0 97 734-832 200-298 (683)
459 COG3352 FlaC Putative archaeal 42.0 2.4E+02 0.0051 29.6 10.1 20 833-852 117-136 (157)
460 PF13805 Pil1: Eisosome compon 41.5 5.9E+02 0.013 29.1 17.3 21 876-896 208-228 (271)
461 PF05103 DivIVA: DivIVA protei 41.3 16 0.00035 35.7 1.9 79 52-130 39-117 (131)
462 TIGR02894 DNA_bind_RsfA transc 41.2 4.3E+02 0.0093 28.0 12.0 51 802-852 103-153 (161)
463 PF08657 DASH_Spc34: DASH comp 41.0 1.1E+02 0.0024 34.5 8.4 25 820-844 235-259 (259)
464 TIGR02894 DNA_bind_RsfA transc 40.8 4.7E+02 0.01 27.7 12.8 43 167-209 102-144 (161)
465 cd00584 Prefoldin_alpha Prefol 40.8 3.6E+02 0.0079 26.5 12.8 31 817-847 94-124 (129)
466 KOG1853 LIS1-interacting prote 40.6 5.9E+02 0.013 28.9 22.4 46 26-71 25-71 (333)
467 TIGR03752 conj_TIGR03752 integ 40.5 2E+02 0.0043 35.1 10.8 21 81-101 91-111 (472)
468 PF07989 Microtub_assoc: Micro 40.4 2.9E+02 0.0063 25.5 9.6 35 162-196 36-70 (75)
469 COG4717 Uncharacterized conser 40.3 1E+03 0.022 31.5 26.2 66 155-220 774-841 (984)
470 TIGR01837 PHA_granule_1 poly(h 40.2 1.8E+02 0.0039 28.9 8.9 36 83-118 51-86 (118)
471 PF07851 TMPIT: TMPIT-like pro 40.1 2.5E+02 0.0055 32.8 11.2 13 835-847 79-91 (330)
472 PLN03229 acetyl-coenzyme A car 39.3 9.9E+02 0.021 31.1 20.3 81 815-898 647-734 (762)
473 PRK15178 Vi polysaccharide exp 39.3 5.1E+02 0.011 31.5 13.9 30 868-897 364-393 (434)
474 PF11172 DUF2959: Protein of u 38.7 5.6E+02 0.012 28.1 18.1 112 787-898 62-192 (201)
475 KOG2010 Double stranded RNA bi 38.7 2.3E+02 0.0051 33.0 10.4 86 753-852 125-210 (405)
476 PF05377 FlaC_arch: Flagella a 38.4 1E+02 0.0022 27.1 5.9 23 776-798 22-44 (55)
477 PF06632 XRCC4: DNA double-str 37.9 7.4E+02 0.016 29.2 15.1 64 755-824 145-208 (342)
478 PF05008 V-SNARE: Vesicle tran 37.8 2.3E+02 0.005 25.5 8.6 11 812-822 63-73 (79)
479 TIGR03545 conserved hypothetic 37.7 2.9E+02 0.0063 34.5 12.0 57 712-775 149-205 (555)
480 COG0497 RecN ATPase involved i 37.7 9.3E+02 0.02 30.3 21.2 194 34-229 160-371 (557)
481 PHA03011 hypothetical protein; 37.6 1.7E+02 0.0037 28.6 7.8 60 788-847 56-115 (120)
482 PF09763 Sec3_C: Exocyst compl 37.5 5.2E+02 0.011 32.9 14.6 143 105-247 4-163 (701)
483 PF08702 Fib_alpha: Fibrinogen 37.3 4.9E+02 0.011 26.9 16.3 102 738-848 27-128 (146)
484 KOG4637 Adaptor for phosphoino 37.3 8E+02 0.017 29.4 16.6 114 115-228 134-254 (464)
485 KOG3478 Prefoldin subunit 6, K 37.1 4.4E+02 0.0096 26.4 14.5 97 125-221 3-114 (120)
486 TIGR03495 phage_LysB phage lys 37.0 4.9E+02 0.011 26.8 12.1 80 125-204 17-96 (135)
487 PF04912 Dynamitin: Dynamitin 36.7 7.7E+02 0.017 29.1 19.7 157 57-224 207-388 (388)
488 COG1842 PspA Phage shock prote 36.5 6.3E+02 0.014 28.0 24.2 221 1-233 4-225 (225)
489 KOG4460 Nuclear pore complex, 36.5 9.6E+02 0.021 30.1 20.7 154 739-897 573-737 (741)
490 PF05483 SCP-1: Synaptonemal c 36.5 1.1E+03 0.023 30.6 59.6 481 41-896 193-681 (786)
491 PF15369 KIAA1328: Uncharacter 36.4 5E+02 0.011 30.4 12.6 81 138-221 5-85 (328)
492 PF06810 Phage_GP20: Phage min 36.4 2.2E+02 0.0047 29.7 9.2 74 778-851 2-82 (155)
493 PF11180 DUF2968: Protein of u 36.4 6E+02 0.013 27.7 15.1 94 734-827 92-185 (192)
494 PF06120 Phage_HK97_TLTM: Tail 36.4 7.4E+02 0.016 28.7 19.2 140 733-888 41-189 (301)
495 TIGR02971 heterocyst_DevB ABC 36.2 6.8E+02 0.015 28.2 16.0 118 734-851 56-199 (327)
496 PRK13729 conjugal transfer pil 36.0 1.3E+02 0.0029 36.6 8.5 59 105-163 68-126 (475)
497 PF13874 Nup54: Nucleoporin co 35.9 2.5E+02 0.0053 28.6 9.3 107 122-228 32-141 (141)
498 PF06428 Sec2p: GDP/GTP exchan 35.7 33 0.00071 33.3 2.9 85 109-193 4-89 (100)
499 PRK00286 xseA exodeoxyribonucl 35.7 8.3E+02 0.018 29.1 17.9 132 30-167 252-391 (438)
500 PF03961 DUF342: Protein of un 35.7 1.7E+02 0.0037 35.1 9.5 79 749-828 329-407 (451)
No 1
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=100.00 E-value=3.4e-150 Score=1338.88 Aligned_cols=766 Identities=51% Similarity=0.680 Sum_probs=658.6
Q ss_pred hhHHHHhhhHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 001773 22 KEDLVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKT 101 (1015)
Q Consensus 22 kd~lvkqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qlr~~reeqeqki~~~~~~~~ 101 (1015)
||+|||||+|||||||+||||||+||++||+|||+++++++++||||+|||||||+||||||++|||||||||++|++++
T Consensus 1 k~~lvkqh~kvaeeav~gwekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s 80 (769)
T PF05911_consen 1 KDDLVKQHAKVAEEAVSGWEKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKS 80 (769)
T ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 001773 102 KQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIV 181 (1015)
Q Consensus 102 ~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~L 181 (1015)
+||++++.+|+.+|.++.++|..+.+++..+...|+...+.|.+|.+.+.++++++..++.|++++++++..|+|+++++
T Consensus 81 ~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~ 160 (769)
T PF05911_consen 81 KEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVL 160 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHHHHHhHHHHhhhcCCcCCccccCCCC
Q 001773 182 SKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKMEVESLGRDYGDSRLKRSPV 261 (1015)
Q Consensus 182 qeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa~a~mk~ev~~~~~~~~~~r~rr~~~ 261 (1015)
+++|++|++|+++..++++++++||++.++||++||+||+|||+||||||||||||||||+|||+|||+++++||||+|+
T Consensus 161 ~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~~~~~~~~r~r~~~~ 240 (769)
T PF05911_consen 161 SKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALVRKKLPGPAALAQMKNEVESLGRDSGENRRRRSPS 240 (769)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHhHHHHHHhccccccccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccchhhhHhhhhhhHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHhhhccc
Q 001773 262 KPTSPHLSPVSEFSLDNVQKFQKENEFLTERLLAMEEETKMLKEALAKRNSELQASRNLCAKTASKLQSLEAQMQTSTQQ 341 (1015)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~eee~k~lke~l~~~~~elq~sr~~~a~t~~kl~~~e~q~~~~~~~ 341 (1015)
++++++. ++.++.+.++++++|||+||++||||||||||+|++||+||||||+|||+|||||++||+||.
T Consensus 241 ~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql~----- 310 (769)
T PF05911_consen 241 RPSSPHD-----FSPQNPQKRSKESEFLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQLK----- 310 (769)
T ss_pred ccccccc-----ccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 8777653 566788899999999999999999999999999999999999999999999999999999993
Q ss_pred CCCCchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCcCcchhhHhhhhhhhhhhhhccccccC-CCCCCccccccchH
Q 001773 342 KSPTKSVVQIAAEGYTSQNASNPPSLTSMSEDDNDDKVSCADSWATALISELSQIKKEKNVEKSN-KAETPKHLELMDDF 420 (1015)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~s~~~s~~s~s~~~~dd~~s~~~swasalisel~~fk~~k~~~~~~-~~~~~~~~~lmDDF 420 (1015)
++.++++++++++|++||||++|||++|+||++||+|||||||||||||||++|.+++++ .+..++||+|||||
T Consensus 311 -----~~~~~~~e~~~s~~~~~~~s~~s~se~~~dd~~s~s~SWAsaLiseldqfk~~k~~~~~~~~~~~~~~i~LMDDF 385 (769)
T PF05911_consen 311 -----SSGQVSMELSSSQNTSNPPSLTSMSEDGNDDEGSCSDSWASALISELDQFKNEKVISRSSSKTISSSDIDLMDDF 385 (769)
T ss_pred -----HhhccccccccccCCCCCCchhcccccCCCCCCcccchhHHHHhchHHHhccccccccccccCCccccHHHHHHH
Confidence 336888999999999999999999999999999999999999999999999999755555 44567799999999
Q ss_pred HHhHhhhccccCCCCCCccccCCCCCCCCCcccccCCCcccccccchhhhhhccCCCcccccccccCCCCCCCCcccCch
Q 001773 421 LEMEKLACLSNDTNSNGTITASNGPNNKTSDIVNHDASGAVTSGEDLLSEQQRDMNPSVDKLSSNTQSSTVNPEADAGQP 500 (1015)
Q Consensus 421 lEmEkLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 500 (1015)
||||||||+|.++++.++++.+..... ....+.. +.+.+... .. ..-.+.
T Consensus 386 lEmEkLA~~s~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~---------------------~~--~~~~~~ 435 (769)
T PF05911_consen 386 LEMEKLAALSRDSSSPSSCSSSEVDSD------SSVTLES-SSKRESVL---------------------ES--DKLSDR 435 (769)
T ss_pred HHHHHHHhcCCCCCCCCCCCCcccccc------ccccccc-cccccccc---------------------cc--hhhccc
Confidence 999999999998887777642111111 1111111 01111111 00 001255
Q ss_pred hhhHHHHHHHHHHHhh-ccccchhHHHHHHHHHhhhhhhhhhcccccccccccCCCcccccccCCCCCCCccchhhhhhh
Q 001773 501 QLMKLRSRISMLLETI-SKDADMGKIVEDIKRVVEDEHVTLHQHSANCISDEVKCSDVSCSAEAYPGDASLNTERKIDLT 579 (1015)
Q Consensus 501 ~~~~l~~~~~~~~e~~-~~~~~~~~il~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (1015)
.|+|||++++.|+++. +++++ .||+||+.++.++++. +... +. .+..+........-..+
T Consensus 436 ~~~wLqsv~k~v~~q~~~s~i~--~ILedI~~al~~~~~~-------~~~~-----~~-----~~~~~~~~~sL~e~~~s 496 (769)
T PF05911_consen 436 IPEWLQSVLKLVLEQKEVSKIS--EILEDIEIALDSINNS-------SNCD-----DD-----SEEYESMEASLVEESKS 496 (769)
T ss_pred ccHHHHHHHHHHHHHHHhhhHH--HHHHHHHHHHHhhccc-------cccc-----cc-----cchhhhhhhhHHHHHHH
Confidence 7999999999999998 88877 9999999999998751 1110 00 00001111111112344
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhhhhhhhhcCCCCchhhHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHhhhhhhh
Q 001773 580 VQVISQELVAAITQIHDFVLFLGKEARAVHDTTNENGFSQKIEEFYVSFNKVIDSNTYLVDFVFALSNVLAKASELRINV 659 (1015)
Q Consensus 580 ~~~~~~~l~~~~~~i~~~v~~~~~e~~~~~~~~~~~~l~~~~~~f~~~~~~~l~~~~~~~~f~~~l~~~l~~~~~~~~~~ 659 (1015)
...++.+|..++.+|+||+..+ ++|.|+|+++|+|+++|.+|+.+++.+|+|++++||++
T Consensus 497 ~~~~s~eL~~avskIsEfv~~L--------------------ekeVh~C~DLLsgkadLE~fieE~s~tLdwIls~~~SL 556 (769)
T PF05911_consen 497 MIEISQELNVAVSKISEFVLVL--------------------EKEVHVCQDLLSGKADLERFIEEFSLTLDWILSNCFSL 556 (769)
T ss_pred HHhhcccHHHHHHhHHHHHHHH--------------------HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHccchH
Confidence 5568899999999998876655 67888999999999999999999999999999999998
Q ss_pred cCCCCCcCCCCCccccccccccchhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCcccccccchhhhhccCHHHHHHHH
Q 001773 660 MGYKDTEIEPNSPDCIDKVALPENKVIKKDTSGERYPNGCAHISNPTSDPEVPDDGSIVAAYESETTACKFSLEEFEELK 739 (1015)
Q Consensus 660 ~~~~~~e~e~~~~~~~dk~~~~e~k~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~EeleqLE 739 (1015)
.+.. +..|. +...+ .+|. +..-++... -......+..+.++++.++
T Consensus 557 qDv~---------s~~sE---IK~~f-----------~~~s-----s~e~E~~~~------dea~~~~~~el~eelE~le 602 (769)
T PF05911_consen 557 QDVS---------SMRSE---IKKNF-----------DGDS-----SSEAEINSE------DEADTSEKKELEEELEKLE 602 (769)
T ss_pred HHHH---------HHHHH---HHHhh-----------hhcc-----cccccccch------HHHHHHHHHHHHHHHHHHH
Confidence 8711 11111 11111 0010 001110000 0233445567889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001773 740 LEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKI 819 (1015)
Q Consensus 740 sEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLeaEl~eLqeKV 819 (1015)
.++.++++.+..|+++++.++.+|+++++.|.+|+.+|..++++++.++++++++.+.|+.+++++..+++++++++.||
T Consensus 603 ~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki 682 (769)
T PF05911_consen 603 SEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKI 682 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhh-hcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 001773 820 ESLENELQDEKMSHHNAMAKCKELEEQLQRNENC-AVCSSEADENKIKQDRDLAAAAERLAECQETILLLGKQLKSLRPQ 898 (1015)
Q Consensus 820 esLE~ELe~ek~~~eEleaK~keLEeQLe~~~~~-~lk~q~~kdLKikqEkEIaaAeeKLAEcQeTI~sLEKQLKsLa~~ 898 (1015)
..|+.||++++..+.++.++|.+|+++|+++... ......+.+++++++|+|++|++||||||+||.+||+|||+|+++
T Consensus 683 ~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~kqe~EiaaAA~KLAECQeTI~sLGkQLksLa~~ 762 (769)
T PF05911_consen 683 SSLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLANEDKKIKQEKEIAAAAEKLAECQETIASLGKQLKSLATP 762 (769)
T ss_pred HHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 9999999999999999999999999999999872 222234778899999999999999999999999999999999999
Q ss_pred CcccCCC
Q 001773 899 SEVIGSP 905 (1015)
Q Consensus 899 ~e~~~~~ 905 (1015)
+||++++
T Consensus 763 ~d~~~ds 769 (769)
T PF05911_consen 763 EDFLLDS 769 (769)
T ss_pred hhhhccC
Confidence 9999874
No 2
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=99.53 E-value=1.6e-09 Score=132.38 Aligned_cols=36 Identities=31% Similarity=0.321 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHhhccccchhHHHHHHHHHhhhhhh
Q 001773 503 MKLRSRISMLLETISKDADMGKIVEDIKRVVEDEHV 538 (1015)
Q Consensus 503 ~~l~~~~~~~~e~~~~~~~~~~il~~ik~~l~~~~~ 538 (1015)
+.+++++..+|....+....++++.+|+.+|++|..
T Consensus 430 ~~~~~~~~~wLqsv~k~v~~q~~~s~i~~ILedI~~ 465 (769)
T PF05911_consen 430 DKLSDRIPEWLQSVLKLVLEQKEVSKISEILEDIEI 465 (769)
T ss_pred hhhcccccHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 579999999999999999999999999999999976
No 3
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.44 E-value=1.7e-06 Score=110.77 Aligned_cols=50 Identities=16% Similarity=0.096 Sum_probs=26.3
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHH
Q 001773 286 NEFLTERLLAMEEETKMLKEALAKRNSELQASRNLCAKTASKLQSLEAQM 335 (1015)
Q Consensus 286 ~~~l~~rl~~~eee~k~lke~l~~~~~elq~sr~~~a~t~~kl~~~e~q~ 335 (1015)
+.-+..++..++.+.+.+...+.....+|+..+..+...-.++..++...
T Consensus 450 l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~~l~~~~ 499 (1164)
T TIGR02169 450 IKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQA 499 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555555555555555555544
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.32 E-value=3.2e-06 Score=108.20 Aligned_cols=108 Identities=20% Similarity=0.258 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001773 117 NFEQELLRSAAENATLSRSLQERSNMLIKIS-EEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMS 195 (1015)
Q Consensus 117 ElEkeLeelkaEl~aLeeqLeelqeeI~EL~-eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s 195 (1015)
.+..++..+..++..+...+..++..+..+. .++.+++.++..+..++..++..+..++.++..+..++..+..++...
T Consensus 255 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l 334 (1164)
T TIGR02169 255 KLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKL 334 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444433 344446777777777777777777777777777777666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001773 196 MRSAEAANKQHMEGVKKIAKLEAECQRLR 224 (1015)
Q Consensus 196 ~qsaeal~KQ~lEl~KKLaKLEaEcqrLr 224 (1015)
...++.+..++.+....+..++.++..+.
T Consensus 335 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 363 (1164)
T TIGR02169 335 LAEIEELEREIEEERKRRDKLTEEYAELK 363 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666655555554443
No 5
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.22 E-value=9.5e-06 Score=101.00 Aligned_cols=132 Identities=16% Similarity=0.209 Sum_probs=111.5
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHH
Q 001773 729 KFSLEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQEL 808 (1015)
Q Consensus 729 ~~s~EeleqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eL 808 (1015)
-++.+.++.++..+..+...+..++.++..+..++.++...+++|+.+++.+.++...+-..+..+..++..++..+...
T Consensus 774 ~~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~ 853 (1293)
T KOG0996|consen 774 GVSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKK 853 (1293)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 46889999999999999999999999999999999999999999999999999988888888888888888887775544
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhcccchhh
Q 001773 809 E---AEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCSSEAD 861 (1015)
Q Consensus 809 e---aEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~~~~~~lk~q~~k 861 (1015)
. ..++.+++.|+.++.|++........ .+++..|+.+|+.+++...+.+.++
T Consensus 854 ~~d~~~l~~~~~~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~e~~q~qk~k 908 (1293)
T KOG0996|consen 854 VVDKKRLKELEEQIEELKKEVEELQEKAAK-KARIKELQNKIDEIGGEKVQAQKDK 908 (1293)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhchhhHHhHHH
Confidence 4 56677888899999999999855555 7999999999999998444443333
No 6
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.17 E-value=0.00012 Score=93.79 Aligned_cols=105 Identities=21% Similarity=0.272 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 745 LATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLEN 824 (1015)
Q Consensus 745 lE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLeaEl~eLqeKVesLE~ 824 (1015)
+...+..++.++..+...+..+...+..++.++..+...+..++.++..+...+..+...+..++.++..+..++..++.
T Consensus 801 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 880 (1179)
T TIGR02168 801 LREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLN 880 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333333333334444444444444444444
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHh
Q 001773 825 ELQDEKMSHHNAMAKCKELEEQLQR 849 (1015)
Q Consensus 825 ELe~ek~~~eEleaK~keLEeQLe~ 849 (1015)
++........++..++.+++.++..
T Consensus 881 ~~~~l~~~~~~~~~~~~~~~~~~~~ 905 (1179)
T TIGR02168 881 ERASLEEALALLRSELEELSEELRE 905 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444443
No 7
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.92 E-value=0.0013 Score=86.92 Aligned_cols=134 Identities=13% Similarity=0.149 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHH---HHHHHHhhhHH------HHHHHHH----HHHHHhhhHH
Q 001773 39 GWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKE---CMRQIRNLKEE------HEQKLQD----FVLTKTKQWD 105 (1015)
Q Consensus 39 gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKe---c~~qlr~~ree------qeqki~~----~~~~~~~e~e 105 (1015)
.-++++.++.+++.++.+...+...++.++..+...+.+ -..++..++.. .-+++.. .+...-.+|+
T Consensus 225 ~l~~~q~kie~~~~~~~~le~ei~~l~~~~~~l~~~~~~~~~l~~ql~~l~~~~~~~~~~~~rL~~~i~~~l~~s~eEL~ 304 (1311)
T TIGR00606 225 QITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLN 304 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHH
Confidence 444455555555555555555555555555544443222 22222222221 1122222 1222336677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 001773 106 KIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREIN 172 (1015)
Q Consensus 106 ~~~~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e 172 (1015)
.+...+...+.+.+.++..+..++..+...+..++.....+...+.+++++......++.....-+.
T Consensus 305 ~ll~~f~~~~~e~~~~~~~le~e~~~l~~el~~l~~~~~~l~~e~gkl~~~~~~~~~~~~~~~~~~~ 371 (1311)
T TIGR00606 305 DLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQ 371 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777777777666666655555554444443
No 8
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.91 E-value=0.0013 Score=86.01 Aligned_cols=38 Identities=29% Similarity=0.322 Sum_probs=21.3
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001773 286 NEFLTERLLAMEEETKMLKEALAKRNSELQASRNLCAK 323 (1015)
Q Consensus 286 ~~~l~~rl~~~eee~k~lke~l~~~~~elq~sr~~~a~ 323 (1015)
.+.+..++..++.+-..+...+.....+++..+.-+..
T Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 492 (1163)
T COG1196 455 LEELRDRLKELERELAELQEELQRLEKELSSLEARLDR 492 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666666655544443
No 9
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.88 E-value=0.002 Score=86.11 Aligned_cols=110 Identities=17% Similarity=0.188 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001773 119 EQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRS 198 (1015)
Q Consensus 119 EkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qs 198 (1015)
.+...++...+..+...++.-+....++...+-++++++..+++.+..+......|..++.....++..+..+++.....
T Consensus 1012 ~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~ 1091 (1930)
T KOG0161|consen 1012 NKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAE 1091 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33334444445555555555666666777777788899988888888888888899999998888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001773 199 AEAANKQHMEGVKKIAKLEAECQRLRGLVR 228 (1015)
Q Consensus 199 aeal~KQ~lEl~KKLaKLEaEcqrLr~l~r 228 (1015)
+..+.+++.++...|..+++++...++-.-
T Consensus 1092 ~~~l~k~i~eL~~~i~el~e~le~er~~r~ 1121 (1930)
T KOG0161|consen 1092 VAQLQKQIKELEARIKELEEELEAERASRA 1121 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999998888877776543
No 10
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.83 E-value=0.0026 Score=84.97 Aligned_cols=195 Identities=20% Similarity=0.220 Sum_probs=132.3
Q ss_pred HHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHH--HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 001773 44 EAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHE--QKLQDFVLTKTKQWDKIRLEFEAKIANFEQE 121 (1015)
Q Consensus 44 e~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qlr~~reeqe--qki~~~~~~~~~e~e~~~~ELEaKLaElEke 121 (1015)
+.|+..++.+|+........++.....|...+-.|-.||-.=++--. .-+.+....++.+.+..-.++..++...+.+
T Consensus 844 ~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~ 923 (1930)
T KOG0161|consen 844 EEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKERLEEEEEK 923 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888888888888888888777433222111 1112233444455555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001773 122 LLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEA 201 (1015)
Q Consensus 122 LeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaea 201 (1015)
...+..+...+...++.+...+.++...+.++..+...+..++.+++.++..+...+..+.++...+.+....+...+..
T Consensus 924 ~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~ 1003 (1930)
T KOG0161|consen 924 NAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQA 1003 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555566666666666666666667777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHHHHHhHHHHh
Q 001773 202 ANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKMEVE 245 (1015)
Q Consensus 202 l~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa~a~mk~ev~ 245 (1015)
..++...+.+...+++..+..+...+.+. .++++|+|
T Consensus 1004 ~eek~~~l~k~~~kle~~l~~le~~le~e-------~~~r~e~E 1040 (1930)
T KOG0161|consen 1004 EEEKAKSLNKAKAKLEQQLDDLEVTLERE-------KRIRMELE 1040 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 88888888888888888888887777654 36777777
No 11
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.82 E-value=0.0024 Score=83.38 Aligned_cols=79 Identities=25% Similarity=0.311 Sum_probs=50.2
Q ss_pred HHhHHHHHHHHHhhhcchhhHHHHhhhHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhh-------hHHHHHhhhhHHHH
Q 001773 4 QIKELNEKLSAANSEISAKEDLVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKL-------TAEDRAAHLDGALK 76 (1015)
Q Consensus 4 ~~~~l~ekl~~a~~~~~~kd~lvkqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~-------~le~rv~hLd~aLK 76 (1015)
+++.++.+|..+-.++......+.++..--.++-..++..+.+...++..+..++.... .++..+.++..-++
T Consensus 233 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~ 312 (1163)
T COG1196 233 KLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLE 312 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777777777777777776644333 33444444444444
Q ss_pred HHHHHH
Q 001773 77 ECMRQI 82 (1015)
Q Consensus 77 ec~~ql 82 (1015)
....++
T Consensus 313 ~~~~~~ 318 (1163)
T COG1196 313 ELENEL 318 (1163)
T ss_pred HHHHHH
Confidence 444433
No 12
>PRK02224 chromosome segregation protein; Provisional
Probab=98.73 E-value=0.0032 Score=79.64 Aligned_cols=28 Identities=36% Similarity=0.414 Sum_probs=12.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhHHH
Q 001773 289 LTERLLAMEEETKMLKEALAKRNSELQA 316 (1015)
Q Consensus 289 l~~rl~~~eee~k~lke~l~~~~~elq~ 316 (1015)
+.+.+..++.+.+.|.+-++....++..
T Consensus 347 ~~~~~~~le~~~~~l~~~~~~l~~~~~~ 374 (880)
T PRK02224 347 LREDADDLEERAEELREEAAELESELEE 374 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555444444444444433
No 13
>PRK02224 chromosome segregation protein; Provisional
Probab=98.60 E-value=0.0071 Score=76.65 Aligned_cols=95 Identities=15% Similarity=0.218 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 756 LEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSL-----ETHAQELEAEVNLLRAKIESLENELQDEK 830 (1015)
Q Consensus 756 lEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edL-----esrL~eLeaEl~eLqeKVesLE~ELe~ek 830 (1015)
+..+...+.+++..+.+++..+..++.....+.+++..+..++..+ ..++..+..++..+...+..++..+...+
T Consensus 594 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l~~~~~~~~~e~l~~~~~~~~~~~~~l~~~l~~~~ 673 (880)
T PRK02224 594 IRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELR 673 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444333333333333333333443333333333 22344444555555555555555555555
Q ss_pred hhhHHHHHHHHHHHHHHHhh
Q 001773 831 MSHHNAMAKCKELEEQLQRN 850 (1015)
Q Consensus 831 ~~~eEleaK~keLEeQLe~~ 850 (1015)
.....+..++..++.+++.+
T Consensus 674 ~~~~~l~~~i~~~~~~~e~~ 693 (880)
T PRK02224 674 EERDDLQAEIGAVENELEEL 693 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555544
No 14
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.58 E-value=0.0067 Score=75.37 Aligned_cols=37 Identities=35% Similarity=0.493 Sum_probs=22.2
Q ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001773 70 HLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFE 112 (1015)
Q Consensus 70 hLd~aLKec~~qlr~~reeqeqki~~~~~~~~~e~e~~~~ELE 112 (1015)
..++.|+....-||.+-+|.+. ..+-++||+.|.-++
T Consensus 188 kI~ell~yieerLreLEeEKee------L~~Yqkldk~rr~lE 224 (1200)
T KOG0964|consen 188 KINELLKYIEERLRELEEEKEE------LEKYQKLDKERRSLE 224 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH------HHHHHHHHHhHhhhh
Confidence 3455566666666666666554 455677777766554
No 15
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.45 E-value=0.023 Score=75.33 Aligned_cols=68 Identities=15% Similarity=0.127 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 91 QKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIE 158 (1015)
Q Consensus 91 qki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~ 158 (1015)
.++...+....+.|+.++.+++.++..++..+..+...+....+.+......+......+..+..++.
T Consensus 397 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~q~~L~ei~~~l~~~eq~~~~~~e~~~~~~~~i~~~~~~l~ 464 (1311)
T TIGR00606 397 TLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQ 464 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566677778888888888888888888888888888888888887777777777777666666655
No 16
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.41 E-value=0.023 Score=73.23 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001773 868 DRDLAAAAERLAECQETILLLGKQLKS 894 (1015)
Q Consensus 868 EkEIaaAeeKLAEcQeTI~sLEKQLKs 894 (1015)
..++..+..++..++..+..+..+|..
T Consensus 914 ~~~l~~l~~~~~~~~~~~~~l~~~l~e 940 (1179)
T TIGR02168 914 RRELEELREKLAQLELRLEGLEVRIDN 940 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666665
No 17
>PRK03918 chromosome segregation protein; Provisional
Probab=98.39 E-value=0.021 Score=72.20 Aligned_cols=15 Identities=27% Similarity=0.432 Sum_probs=6.9
Q ss_pred CCCccCCCCCCCccc
Q 001773 951 PLDLYTSPCSPSENE 965 (1015)
Q Consensus 951 ~~~~~~~~~~~s~~~ 965 (1015)
|+-.+.-|..+-|..
T Consensus 814 ~~lilDEp~~~lD~~ 828 (880)
T PRK03918 814 PLLILDEPTPFLDEE 828 (880)
T ss_pred CeEEEeCCCcccCHH
Confidence 444444455544443
No 18
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.33 E-value=0.029 Score=71.12 Aligned_cols=60 Identities=17% Similarity=0.262 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001773 732 LEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQL 791 (1015)
Q Consensus 732 ~EeleqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qL 791 (1015)
...++.++.+...+++.+..|.......+..|.+++..+.+|..++..++..+.....++
T Consensus 660 d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em 719 (1074)
T KOG0250|consen 660 DDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEM 719 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666655555555555555555555555555555444333333
No 19
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.97 E-value=0.2 Score=67.07 Aligned_cols=186 Identities=19% Similarity=0.205 Sum_probs=114.1
Q ss_pred HHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHH------HHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001773 43 AEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHE------QKLQDFVLTKTKQWDKIRLEFEAKIA 116 (1015)
Q Consensus 43 ae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qlr~~reeqe------qki~~~~~~~~~e~e~~~~ELEaKLa 116 (1015)
...+...+..+..-..+++..|.-+|..+.+-|++|-++.....++=. .+|.+....+..+|..-..++...|.
T Consensus 229 ~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~~~kf~~El~~q~kL~eL~ks~~ee~~~~~~el~~~i~ 308 (1822)
T KOG4674|consen 229 LKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAESSEEKFEKELSTQKKLNELWKSKLEELSHEVAELQRAIE 308 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666677778888888888899999888887755433 67888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH--------------------------------------
Q 001773 117 NFEQELLRSAAENATLSRSLQERSNMLI----KISEEKSQAE-------------------------------------- 154 (1015)
Q Consensus 117 ElEkeLeelkaEl~aLeeqLeelqeeI~----EL~eeiErlE-------------------------------------- 154 (1015)
.++.-+......+......+......+. .+...+.+++
T Consensus 309 ~~~klled~~~~~~e~~d~l~e~~~sl~~~~~~~~k~~~~le~~l~~an~~~~~~~~~~~~s~~~a~~s~~~~~~~sLtk 388 (1822)
T KOG4674|consen 309 ELEKLLEDASERNKENTDQLKELEQSLSKLNEKLEKKVSRLEGELEDANDSLSATGESSMVSEKAALASSLIRPGSSLTK 388 (1822)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcccchhhhHHHHHHhhcccchhHHH
Confidence 8866666655554444333322222211 1112222222
Q ss_pred ---------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001773 155 ---------AEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRG 225 (1015)
Q Consensus 155 ---------gEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~ 225 (1015)
.++..+.-.++++.....+...++....-.++.-..+++........+..++....+++..++..+..+.+
T Consensus 389 ~ys~~~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~~~l~~ 468 (1822)
T KOG4674|consen 389 LYSKYSKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKELESLKK 468 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222333333333333333333333455555566666777777888888888888888888877766
Q ss_pred hhh
Q 001773 226 LVR 228 (1015)
Q Consensus 226 l~r 228 (1015)
..+
T Consensus 469 ~~~ 471 (1822)
T KOG4674|consen 469 QLN 471 (1822)
T ss_pred HHH
Confidence 544
No 20
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.83 E-value=0.045 Score=65.80 Aligned_cols=169 Identities=12% Similarity=0.183 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHH--HHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 001773 42 KAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQ--KLQDFVLTKTKQWDKIRLEFEAKIANFE 119 (1015)
Q Consensus 42 kae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qlr~~reeqeq--ki~~~~~~~~~e~e~~~~ELEaKLaElE 119 (1015)
+++.|-..|.+....+..++..++.++..|...|..-.+....++.+.+. ..++.+..+...+..-..+...+|.+++
T Consensus 147 ~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LE 226 (546)
T PF07888_consen 147 ECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELE 226 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666666777778888888888886655555554444331 1222223333333333333444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001773 120 QELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSA 199 (1015)
Q Consensus 120 keLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsa 199 (1015)
..+..+.......+..+..+++...++......+.+++......+.+.......++.+...+.+++....+.+..+++.+
T Consensus 227 edi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~lqaSqq~~ 306 (546)
T PF07888_consen 227 EDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQLQASQQEA 306 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444443333333333332222222222222333333333333333333333444444444444444444444444
Q ss_pred HHHHHHHHHHH
Q 001773 200 EAANKQHMEGV 210 (1015)
Q Consensus 200 eal~KQ~lEl~ 210 (1015)
..+.+.+..+.
T Consensus 307 ~~L~~EL~~~~ 317 (546)
T PF07888_consen 307 ELLRKELSDAV 317 (546)
T ss_pred HHHHHHHHHHH
Confidence 44444433333
No 21
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.79 E-value=0.011 Score=71.94 Aligned_cols=231 Identities=17% Similarity=0.268 Sum_probs=150.7
Q ss_pred hHHHHHhhhhHHHHHHHHHHHhhhHHH-HHH---HHH----HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 63 TAEDRAAHLDGALKECMRQIRNLKEEH-EQK---LQD----FVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSR 134 (1015)
Q Consensus 63 ~le~rv~hLd~aLKec~~qlr~~reeq-eqk---i~~----~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLee 134 (1015)
.++.++..|...|++|...|..++=+. +.+ |.+ .-..-.+| -.++...+.....+...+..++.++..+..
T Consensus 253 ~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE-~~A~~~vek~~~~l~~~l~~~~e~~~~l~~ 331 (569)
T PRK04778 253 DIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILERE-VKARKYVEKNSDTLPDFLEHAKEQNKELKE 331 (569)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777776666554222 111 111 11111111 123344444445555555666666666666
Q ss_pred HHHHHHHH----------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001773 135 SLQERSNM----------LIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANK 204 (1015)
Q Consensus 135 qLeelqee----------I~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~K 204 (1015)
.++.++.. +..+..++..++.++..+.+++.........++.++..+.++++.+..+.......+..+.+
T Consensus 332 Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk 411 (569)
T PRK04778 332 EIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRK 411 (569)
T ss_pred HHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666665 56677778888888888888888888888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcc-CCC-hHHHHHhHHHH----hhhcCCcCCccccCCCCCCCCCCCCCCcccchh-
Q 001773 205 QHMEGVKKIAKLEAECQRLRGLVRKK-LPG-PAALAQMKMEV----ESLGRDYGDSRLKRSPVKPTSPHLSPVSEFSLD- 277 (1015)
Q Consensus 205 Q~lEl~KKLaKLEaEcqrLr~l~rk~-lpg-paa~a~mk~ev----~~~~~~~~~~r~rr~~~~~~~~~~~~~~~~~~~- 277 (1015)
...+..+++.++...+..++.+++|+ +|| |.-.-.|-.+| +.|..... +-| +--....
T Consensus 412 ~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~-----~g~----------VNm~ai~~ 476 (569)
T PRK04778 412 DELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELE-----EKP----------INMEAVNR 476 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhc-----cCC----------CCHHHHHH
Confidence 99999999999999999999999888 999 77776655544 44443211 111 1111122
Q ss_pred hhHhhhhhhHHHHHHHHhHHHHHHHHHHHHHh
Q 001773 278 NVQKFQKENEFLTERLLAMEEETKMLKEALAK 309 (1015)
Q Consensus 278 ~~~~~~~~~~~l~~rl~~~eee~k~lke~l~~ 309 (1015)
-........+||..+...|.+....+-+++..
T Consensus 477 e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy 508 (569)
T PRK04778 477 LLEEATEDVETLEEETEELVENATLTEQLIQY 508 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344555666666666666665555555444
No 22
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.65 E-value=0.06 Score=58.63 Aligned_cols=40 Identities=30% Similarity=0.267 Sum_probs=24.9
Q ss_pred HhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHH
Q 001773 36 AVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGAL 75 (1015)
Q Consensus 36 av~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aL 75 (1015)
+..=-++||+|+.+|.+.+..+....-..++|+.....-|
T Consensus 27 ~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL 66 (237)
T PF00261_consen 27 AEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKL 66 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3444557888888888877776666555555554444333
No 23
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.63 E-value=0.42 Score=60.50 Aligned_cols=196 Identities=16% Similarity=0.117 Sum_probs=117.0
Q ss_pred HHHhhhHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHH-HHhhhhHHHHHHHHHHHhhhHHHHHHHH------HHH
Q 001773 25 LVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAED-RAAHLDGALKECMRQIRNLKEEHEQKLQ------DFV 97 (1015)
Q Consensus 25 lvkqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~-rv~hLd~aLKec~~qlr~~reeqeqki~------~~~ 97 (1015)
-++--+..++++..+-.+-........+.++....++.++++ |-..|.+++|---.++..++.+--+.-. +++
T Consensus 245 ~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl 324 (1174)
T KOG0933|consen 245 KRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEITREETSLNLKKETL 324 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777777777766666666666666666666554 4556666666666666666655443222 222
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001773 98 LTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYE 177 (1015)
Q Consensus 98 ~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~E 177 (1015)
... ++-..++...+.+.+..|.+-+..+.........+++...+.....+.++..+.-+..-+...+.+-.-|..+
T Consensus 325 ~~e----~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~q 400 (1174)
T KOG0933|consen 325 NGE----EEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLSSNEDEEKTLEDQ 400 (1174)
T ss_pred hhh----HHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccchhhHHHH
Confidence 222 2222344445555555566666666666666666666666666667777777776666666666655566666
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001773 178 LHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLR 224 (1015)
Q Consensus 178 L~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr 224 (1015)
|......+-....++....-.+.-+++++....-+++...+++....
T Consensus 401 l~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~ 447 (1174)
T KOG0933|consen 401 LRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDI 447 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHH
Confidence 66666666556666666666666666666666666655555554443
No 24
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.57 E-value=0.11 Score=56.56 Aligned_cols=124 Identities=15% Similarity=0.167 Sum_probs=81.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001773 92 KLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREI 171 (1015)
Q Consensus 92 ki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~ 171 (1015)
|+.++ .+...+.+..+..++.+....+.++..+..++.......+.....+.+....+..+++++.-..+|...++..+
T Consensus 65 kL~~~-e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki 143 (237)
T PF00261_consen 65 KLEEA-EKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKI 143 (237)
T ss_dssp HHHHH-HHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhH
Confidence 44444 55555666677777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001773 172 NSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKL 216 (1015)
Q Consensus 172 e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKL 216 (1015)
..|..+|......+..+...-.......+....++..+..++...
T Consensus 144 ~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkea 188 (237)
T PF00261_consen 144 KELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEA 188 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777666555544444444444444444444444333
No 25
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.52 E-value=0.2 Score=56.03 Aligned_cols=35 Identities=26% Similarity=0.405 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHH
Q 001773 42 KAEAEALALKNHLESVTLSKLTAEDRAAHLDGALK 76 (1015)
Q Consensus 42 kae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLK 76 (1015)
.++.++..+++.|++++.....|+.++..|.+=|.
T Consensus 100 ~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~ 134 (312)
T PF00038_consen 100 DLEEELESLRKDLDEETLARVDLENQIQSLKEELE 134 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHH
Confidence 45788999999999999999999999988876543
No 26
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.48 E-value=0.88 Score=60.42 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHhccCC
Q 001773 877 RLAECQETILLLGKQLKSLRPQ 898 (1015)
Q Consensus 877 KLAEcQeTI~sLEKQLKsLa~~ 898 (1015)
.+...+.+|..|+++|+.....
T Consensus 772 ~I~~l~~~i~~L~~~l~~ie~~ 793 (1201)
T PF12128_consen 772 RIQQLKQEIEQLEKELKRIEER 793 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5666677777777777766554
No 27
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.16 Score=62.41 Aligned_cols=138 Identities=17% Similarity=0.244 Sum_probs=94.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 78 CMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEI 157 (1015)
Q Consensus 78 c~~qlr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi 157 (1015)
.-|+|..-|||++.|-.+.-....+|.|+.| +++=-++....+..+...-++.|+.++..+.++.-++
T Consensus 379 rQReiE~qrEEerkkeie~rEaar~ElEkqR------------qlewErar~qem~~Qk~reqe~iv~~nak~~ql~~el 446 (1118)
T KOG1029|consen 379 RQREIERQREEERKKEIERREAAREELEKQR------------QLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQEL 446 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4466666677777665554333333322221 2222244455666666777777777888888888888
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001773 158 ELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLV 227 (1015)
Q Consensus 158 ~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~ 227 (1015)
..|..++..+...+.+.+-.+..+..+++..+..++.....++.+..++.|++.++.+|--|-+.|.+-+
T Consensus 447 etLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~ql 516 (1118)
T KOG1029|consen 447 ETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQL 516 (1118)
T ss_pred HHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888888877777776665543
No 28
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.41 E-value=0.36 Score=62.15 Aligned_cols=58 Identities=29% Similarity=0.345 Sum_probs=35.3
Q ss_pred HHHHHHhhhcc-hhhHHHHhhhHHHHHHh----hhhHHHHHHHHHHHHhHHHHhhhhhhHHHH
Q 001773 10 EKLSAANSEIS-AKEDLVKQHTKVAEEAV----SGWEKAEAEALALKNHLESVTLSKLTAEDR 67 (1015)
Q Consensus 10 ekl~~a~~~~~-~kd~lvkqh~kvaeeav----~gwekae~e~~~lK~~Le~~~~q~~~le~r 67 (1015)
++|-....++. ....|.-+..|.++|=+ .--.++++++..++.+|+.+++.+..+.+.
T Consensus 475 ~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~ 537 (1317)
T KOG0612|consen 475 EKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADS 537 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555554 33344445566666533 344566788888888888887776666433
No 29
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.35 E-value=1.4 Score=59.63 Aligned_cols=99 Identities=15% Similarity=0.122 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---------------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001773 754 ENLEMTKSQLYETEQLLAEVKAQLASAQKSNSL---------------AETQLKCMAESYRSLETHAQELEAEVNLLRAK 818 (1015)
Q Consensus 754 eklEel~~qLqelE~~LeELesQLesLqeS~se---------------lE~qLk~~~e~~edLesrL~eLeaEl~eLqeK 818 (1015)
..++.++.+...++..+..++.++-.+..-.+- ...-...+...++.++..+..+..++.+.+.+
T Consensus 935 ~~~e~lr~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~l~~~~~~~~~Le~~Le~iE~~~~~areql~qaq~q 1014 (1486)
T PRK04863 935 EQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQ 1014 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555566666666666655555442221 11112344455566666666666777777777
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh
Q 001773 819 IESLENELQDEKMSHHNAMAKCKELEEQLQRNEN 852 (1015)
Q Consensus 819 VesLE~ELe~ek~~~eEleaK~keLEeQLe~~~~ 852 (1015)
...++.++...+..+..+..++.+++.+|..+|.
T Consensus 1015 ~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~ 1048 (1486)
T PRK04863 1015 LAQYNQVLASLKSSYDAKRQMLQELKQELQDLGV 1048 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 7777777777777777888888888888888775
No 30
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.28 E-value=0.8 Score=55.53 Aligned_cols=291 Identities=18% Similarity=0.190 Sum_probs=150.3
Q ss_pred hHHhHHHHHHHHHhhhcchhhHHHHhhhHH------HHHHhh---hhHHH--HHHHHHHHHhHHHHhhhhhhHHHHHhhh
Q 001773 3 EQIKELNEKLSAANSEISAKEDLVKQHTKV------AEEAVS---GWEKA--EAEALALKNHLESVTLSKLTAEDRAAHL 71 (1015)
Q Consensus 3 ~~~~~l~ekl~~a~~~~~~kd~lvkqh~kv------aeeav~---gweka--e~e~~~lK~~Le~~~~q~~~le~rv~hL 71 (1015)
+.+..||++|+.-..-+. -|-.||.+. .+.+|. |-=|+ |+|....++.|+++......++..+..|
T Consensus 42 ~El~~LNDRLA~YIekVR---~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl 118 (546)
T KOG0977|consen 42 KELQELNDRLAVYIEKVR---FLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKL 118 (546)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357788999887766553 244455443 333332 22233 8999999999999999999999888877
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 72 DGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKS 151 (1015)
Q Consensus 72 d~aLKec~~qlr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiE 151 (1015)
.+-+++--..+. +.++ -..++-.+..+|...-..+++++.-+......+..++..|..+...+...|..+...+.
T Consensus 119 ~~e~~elr~~~~----~~~k-~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld 193 (546)
T KOG0977|consen 119 REELKELRKKLE----KAEK-ERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLD 193 (546)
T ss_pred HHHHHHHHHHHH----HHHH-HHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 776665544433 2222 22233556666776666666666666555555555554444444444444444444333
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHH----HHHHHHHHH----H--HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-----H
Q 001773 152 QAEAEIELLKGNIEQCEREINSAK----YELHIVSKE----L--EIRNEEKNMSMRSAEAANKQHMEGVKKIAK-----L 216 (1015)
Q Consensus 152 rlEgEi~LLkERIenlEKE~e~LK----~EL~~LqeE----L--Eil~EEle~s~qsaeal~KQ~lEl~KKLaK-----L 216 (1015)
+-..-..-++.+++.+..++..++ .+|...... . +.+..=...+..++..+..++......-.+ +
T Consensus 194 ~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y 273 (546)
T KOG0977|consen 194 DETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWY 273 (546)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 322222222333333333332222 111111111 1 111111222333333344443333222211 2
Q ss_pred HHHHHHHhhhhhccCCChHHHHHhHHHHhhhcCCcCCccccCCCCCCCCCCCCCCcccchhhhHhhhhhhHHHHHHHHhH
Q 001773 217 EAECQRLRGLVRKKLPGPAALAQMKMEVESLGRDYGDSRLKRSPVKPTSPHLSPVSEFSLDNVQKFQKENEFLTERLLAM 296 (1015)
Q Consensus 217 EaEcqrLr~l~rk~lpgpaa~a~mk~ev~~~~~~~~~~r~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~ 296 (1015)
...+++++.- .-|+-....+-+.||...-....+.|. .+. .+...|.+|.+|+..+
T Consensus 274 ~~kI~~i~~~---~~~~~~~~~~~rEEl~~~R~~i~~Lr~-------------kls--------elE~~n~~L~~~I~dL 329 (546)
T KOG0977|consen 274 KRKIQEIRTS---AERANVEQNYAREELRRIRSRISGLRA-------------KLS--------ELESRNSALEKRIEDL 329 (546)
T ss_pred HHHHHHHHhh---hccccchhHHHHHHHHHHHhcccchhh-------------hhc--------cccccChhHHHHHHHH
Confidence 2222222211 223333444555666644332222221 111 2233456677776655
Q ss_pred ----HHHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 001773 297 ----EEETKMLKEALAKRNSELQASRNLCAKTA 325 (1015)
Q Consensus 297 ----eee~k~lke~l~~~~~elq~sr~~~a~t~ 325 (1015)
+++.+..-.+|+.|.+++...|-=|..-.
T Consensus 330 ~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~ 362 (546)
T KOG0977|consen 330 EYQLDEDQRSFEQALNDKDAEIAKMREECQQLS 362 (546)
T ss_pred HhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 47789999999999999999999888644
No 31
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.26 E-value=0.36 Score=58.34 Aligned_cols=41 Identities=20% Similarity=0.133 Sum_probs=26.8
Q ss_pred HHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHH
Q 001773 35 EAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGAL 75 (1015)
Q Consensus 35 eav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aL 75 (1015)
+....++++..|...|+.+++.+..++..|++.+..|-.-.
T Consensus 196 el~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 196 ELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456677777777777777777777666666666554444
No 32
>PRK11637 AmiB activator; Provisional
Probab=97.25 E-value=0.2 Score=58.89 Aligned_cols=53 Identities=15% Similarity=0.170 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001773 175 KYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLV 227 (1015)
Q Consensus 175 K~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~ 227 (1015)
+..+..++.+...+...+...++.+..+..+..+....+.+++++..++..++
T Consensus 197 ~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I 249 (428)
T PRK11637 197 KTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSI 249 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333344444444444444444444444444443
No 33
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.14 E-value=0.33 Score=60.71 Aligned_cols=144 Identities=19% Similarity=0.244 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHhHHHHhhhhhhHHHHHhhh---hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001773 42 KAEAEALALKNHLESVTLSKLTAEDRAAHL---DGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANF 118 (1015)
Q Consensus 42 kae~e~~~lK~~Le~~~~q~~~le~rv~hL---d~aLKec~~qlr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaEl 118 (1015)
+-|+|+..||..|....+.=..|..+++.| |..||.|+.||+.=-|+=+-|++..+..+-++-. ....+|.+|.+.
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq-~l~~LEkrL~eE 500 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQ-SLQQLEKRLAEE 500 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 789999999999999999999999997766 4679999999999999999999998655544422 224455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 119 EQELLRSAAENATLSRSLQERSNMLIKISEEKSQA--------EAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNE 190 (1015)
Q Consensus 119 EkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErl--------EgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~E 190 (1015)
......+.+++.+..++.... .....+. ..--..++.|...++.++..|+.++...++++..+..
T Consensus 501 ~~~R~~lEkQL~eErk~r~~e-------e~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~ 573 (697)
T PF09726_consen 501 RRQRASLEKQLQEERKARKEE-------EEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELES 573 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhHH-------HHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444333322211 1111111 0112245667777777777777777777766666666
Q ss_pred HHH
Q 001773 191 EKN 193 (1015)
Q Consensus 191 Ele 193 (1015)
+..
T Consensus 574 ~~~ 576 (697)
T PF09726_consen 574 ELQ 576 (697)
T ss_pred HHH
Confidence 553
No 34
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.12 E-value=0.091 Score=63.28 Aligned_cols=160 Identities=19% Similarity=0.271 Sum_probs=87.1
Q ss_pred HHhhhcchhhHHHHhhhHHHHHHhhh----hHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHH
Q 001773 14 AANSEISAKEDLVKQHTKVAEEAVSG----WEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEH 89 (1015)
Q Consensus 14 ~a~~~~~~kd~lvkqh~kvaeeav~g----wekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qlr~~reeq 89 (1015)
.++.++.|+.+++|--.|-.|+.+.- -..-..++..+|++|++.+.-...++-++.-| +..|.+.+..+
T Consensus 148 ~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~L-------leel~f~~~~h 220 (546)
T KOG0977|consen 148 SRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTL-------LEELAFLKRIH 220 (546)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHhcc
Confidence 34566677777777777777776642 22334778888888888888877777777655 34445555555
Q ss_pred HHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH--------------HHHHH
Q 001773 90 EQKLQDFVLTKTKQW-----DKIRLEFEAKIANFEQELLRSAAENAT-----LSRSLQERS--------------NMLIK 145 (1015)
Q Consensus 90 eqki~~~~~~~~~e~-----e~~~~ELEaKLaElEkeLeelkaEl~a-----LeeqLeelq--------------eeI~E 145 (1015)
++.|.+......++- +-++.+|...|.++.++.+..-..+.. ....+++.+ +++..
T Consensus 221 ~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~ 300 (546)
T KOG0977|consen 221 KQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRR 300 (546)
T ss_pred HHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHH
Confidence 555554433333333 334455555555555544443222221 222222222 44444
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001773 146 ISEEKSQAEAEIELLKGNIEQCEREINSAKYELHI 180 (1015)
Q Consensus 146 L~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~ 180 (1015)
+...+..+.+++.-+..+-..+++.+.+|++++..
T Consensus 301 ~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e 335 (546)
T KOG0977|consen 301 IRSRISGLRAKLSELESRNSALEKRIEDLEYQLDE 335 (546)
T ss_pred HHhcccchhhhhccccccChhHHHHHHHHHhhhhh
Confidence 44444445555555555555555555555554443
No 35
>PRK11637 AmiB activator; Provisional
Probab=97.11 E-value=0.37 Score=56.76 Aligned_cols=79 Identities=11% Similarity=0.070 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 144 IKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQR 222 (1015)
Q Consensus 144 ~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqr 222 (1015)
..+......+......+...+..++.....++.+...+..........+..+.........++.++.+...+++..+.+
T Consensus 173 ~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~ 251 (428)
T PRK11637 173 AELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIAR 251 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444444444444444444433333334444333333333334444444444444433
No 36
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.10 E-value=0.23 Score=62.56 Aligned_cols=66 Identities=17% Similarity=0.197 Sum_probs=50.9
Q ss_pred hHHHHhhhHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHH
Q 001773 23 EDLVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEE 88 (1015)
Q Consensus 23 d~lvkqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qlr~~ree 88 (1015)
...+-+-.+..+.+..--...-.|+..++-.++....++..|+.|+..|++.|++..+||...++-
T Consensus 356 ~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~R 421 (775)
T PF10174_consen 356 NSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKER 421 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555444444578888999999999999999999999999999999999887763
No 37
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.10 E-value=0.22 Score=59.99 Aligned_cols=59 Identities=14% Similarity=0.049 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001773 147 SEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQ 205 (1015)
Q Consensus 147 ~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ 205 (1015)
...+..++..+......+..+..++..|+.++..++.+...+..++..+...++.+...
T Consensus 336 ~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~ 394 (562)
T PHA02562 336 SKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKT 394 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444444444444444444444333333333333333333333
No 38
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.08 E-value=0.11 Score=52.70 Aligned_cols=112 Identities=21% Similarity=0.250 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001773 736 EELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLL 815 (1015)
Q Consensus 736 eqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLeaEl~eL 815 (1015)
..|+.+..++..+...+..++..+.......+..|..|+..+..++..+..+++++......+.....+. ..+..+
T Consensus 3 ~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~----~~~E~l 78 (143)
T PF12718_consen 3 QALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRK----SNAEQL 78 (143)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HhHHHH
Confidence 3455566666555555555555555555555555555555555555544444444444443333333332 233478
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q 001773 816 RAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNE 851 (1015)
Q Consensus 816 qeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~~~ 851 (1015)
..+|..|+.+++.-...+.+...++.+.....+.+.
T Consensus 79 ~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~e 114 (143)
T PF12718_consen 79 NRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFE 114 (143)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 888888888888888887777777777766666544
No 39
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.06 E-value=1.9 Score=55.75 Aligned_cols=62 Identities=26% Similarity=0.299 Sum_probs=34.3
Q ss_pred hhHHhHHHHHHHHHhhhcchhhHHHHh-h---hHHHHHHhhhhHHH----HHHHHHHHHhHHHHhhhhhh
Q 001773 2 EEQIKELNEKLSAANSEISAKEDLVKQ-H---TKVAEEAVSGWEKA----EAEALALKNHLESVTLSKLT 63 (1015)
Q Consensus 2 ~~~~~~l~ekl~~a~~~~~~kd~lvkq-h---~kvaeeav~gweka----e~e~~~lK~~Le~~~~q~~~ 63 (1015)
+..++..++|+..---+...|..-|++ | ++++..=..+|-|- |.+-+..+..|.-.+++..-
T Consensus 347 ~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kK 416 (1293)
T KOG0996|consen 347 EEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKK 416 (1293)
T ss_pred HhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888555556666666665 3 33333233455543 34445555555554444333
No 40
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.05 E-value=2.3 Score=56.56 Aligned_cols=63 Identities=14% Similarity=0.254 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001773 165 EQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLV 227 (1015)
Q Consensus 165 enlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~ 227 (1015)
+.++..+.....+.......+..+..+....++..+.+..++......+.++++.+..+..++
T Consensus 472 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L 534 (1201)
T PF12128_consen 472 EQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQL 534 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333334444444444444444444445555555555555556666666666666666655553
No 41
>PRK09039 hypothetical protein; Validated
Probab=97.01 E-value=0.049 Score=62.53 Aligned_cols=68 Identities=19% Similarity=0.223 Sum_probs=59.4
Q ss_pred hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 001773 727 ACKFSLEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCM 794 (1015)
Q Consensus 727 ~~~~s~EeleqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~ 794 (1015)
.+-|+.+++...+.++..++.++..+.+-+..-......++..|.+++.++..++.....++..+...
T Consensus 40 ~q~fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~ 107 (343)
T PRK09039 40 AQFFLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAEL 107 (343)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34577789999999999999999999999999999999999999999999999998888888876643
No 42
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=96.94 E-value=0.13 Score=54.42 Aligned_cols=169 Identities=17% Similarity=0.239 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001773 734 EFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVN 813 (1015)
Q Consensus 734 eleqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLeaEl~ 813 (1015)
++..+.-.+..++.++...++++......|.++++.-.+-......+.......++..+.+..++++..-..........
T Consensus 5 ~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~e 84 (205)
T KOG1003|consen 5 DVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYE 84 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677778888888888888888888888888887777666666666665566666666666666666666666677888
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhcccc-hhhhh---hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001773 814 LLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCSS-EADEN---KIKQDRDLAAAAERLAECQETILLLG 889 (1015)
Q Consensus 814 eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~~~~~~lk~q-~~kdL---KikqEkEIaaAeeKLAEcQeTI~sLE 889 (1015)
+.-.++.-++.+|+......+-.+.+|.+|.+++.-++.+..... ++..+ ....+..|..+..||-+........+
T Consensus 85 EVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aE 164 (205)
T KOG1003|consen 85 EVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAE 164 (205)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 888889999999999999999999999999999998876332221 11111 34456778888888888777777777
Q ss_pred HHHHhccCCCccc
Q 001773 890 KQLKSLRPQSEVI 902 (1015)
Q Consensus 890 KQLKsLa~~~e~~ 902 (1015)
+....|..+.|-|
T Consensus 165 RsVakLeke~Ddl 177 (205)
T KOG1003|consen 165 RRVAKLEKERDDL 177 (205)
T ss_pred HHHHHHcccHHHH
Confidence 8887777765543
No 43
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.91 E-value=0.23 Score=52.58 Aligned_cols=164 Identities=18% Similarity=0.144 Sum_probs=106.2
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHH
Q 001773 730 FSLEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEV---KAQLASAQKSNSLAETQLKCMAESYRSLETHAQ 806 (1015)
Q Consensus 730 ~s~EeleqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeEL---esQLesLqeS~selE~qLk~~~e~~edLesrL~ 806 (1015)
.+.++..+++..+..++..=..+...+..++.+++.+.+.+... +.++..++.....+|++-..+-.+.+.++..-.
T Consensus 19 ~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q 98 (193)
T PF14662_consen 19 KLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQ 98 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666655566666666666666665555444 666666666666677777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhcccchhhhh--hhh----hHHHHHHHHHHHHH
Q 001773 807 ELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCSSEADEN--KIK----QDRDLAAAAERLAE 880 (1015)
Q Consensus 807 eLeaEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~~~~~~lk~q~~kdL--Kik----qEkEIaaAeeKLAE 880 (1015)
.+.+++..|++.-..+..+.+..+....++..+...|+-|+-.+..- ..+.+..+ +.. ...-|.....-..+
T Consensus 99 ~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l--~~~~da~l~e~t~~i~eL~~~ieEy~~~tee 176 (193)
T PF14662_consen 99 SLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESL--ICQRDAILSERTQQIEELKKTIEEYRSITEE 176 (193)
T ss_pred HHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 77788888888888888888888888888888888888888666641 11112222 111 12233344444567
Q ss_pred HHHHHHHHHHHHHhc
Q 001773 881 CQETILLLGKQLKSL 895 (1015)
Q Consensus 881 cQeTI~sLEKQLKsL 895 (1015)
+|-.|..|+.||..+
T Consensus 177 LR~e~s~LEeql~q~ 191 (193)
T PF14662_consen 177 LRLEKSRLEEQLSQM 191 (193)
T ss_pred HHHHHHHHHHHHHhh
Confidence 777788888877543
No 44
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.22 Score=61.30 Aligned_cols=55 Identities=15% Similarity=0.241 Sum_probs=23.7
Q ss_pred HhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 100 KTKQWDKIR-LEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAE 154 (1015)
Q Consensus 100 ~~~e~e~~~-~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlE 154 (1015)
...|||++| .++.++...-+..+-.+++.+..+...++.++..+..|..++..++
T Consensus 409 RqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr 464 (1118)
T KOG1029|consen 409 RQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVR 464 (1118)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhe
Confidence 334555543 2333444433444444444444444444444444444444444333
No 45
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.85 E-value=2.9 Score=54.43 Aligned_cols=74 Identities=18% Similarity=0.236 Sum_probs=50.6
Q ss_pred HHHHHHH-HhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHH--HHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001773 45 AEALALK-NHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHE--QKLQDFVLTKTKQWDKIRLEFEAKIANF 118 (1015)
Q Consensus 45 ~e~~~lK-~~Le~~~~q~~~le~rv~hLd~aLKec~~qlr~~reeqe--qki~~~~~~~~~e~e~~~~ELEaKLaEl 118 (1015)
.+...++ ++..-+++.....++++++.++-++.--+++|+.+++-+ |+-.+..........+++.+++.....+
T Consensus 479 ~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~ 555 (1317)
T KOG0612|consen 479 SEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDM 555 (1317)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhh
Confidence 4445555 577778888888999999999999999999998888766 3333333444455556666666544444
No 46
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.84 E-value=0.38 Score=57.97 Aligned_cols=52 Identities=21% Similarity=0.244 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 109 LEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELL 160 (1015)
Q Consensus 109 ~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LL 160 (1015)
..++.++..++.++..++.........+..++..+..+...+...++.+..+
T Consensus 230 ~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~ 281 (562)
T PHA02562 230 KTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMY 281 (562)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555555555555556666666666666666666666655
No 47
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.82 E-value=0.99 Score=51.54 Aligned_cols=195 Identities=21% Similarity=0.246 Sum_probs=128.0
Q ss_pred HHHHHhHHHHhhhhhhHHHHHh-----------hhhHHHHHHH-HHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001773 48 LALKNHLESVTLSKLTAEDRAA-----------HLDGALKECM-RQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKI 115 (1015)
Q Consensus 48 ~~lK~~Le~~~~q~~~le~rv~-----------hLd~aLKec~-~qlr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKL 115 (1015)
-.|++.+.+.......+|.++. ..+...|.-| .|++.+|.=-+ ...+..|=.-|..+...+
T Consensus 78 ~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY~~a~~d~r~~m~~q~~~vK~~aR-------l~aK~~WYeWR~~ll~gl 150 (325)
T PF08317_consen 78 RELKKYISEGRQIFEEIEEETYESNPPLFREYYTADPDMRLLMDNQFQLVKTYAR-------LEAKKMWYEWRMQLLEGL 150 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 3455555555555555554432 1233334444 45565555433 334455655555544443
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 001773 116 -ANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCE----REINSAKYELHIVSKELEIRNE 190 (1015)
Q Consensus 116 -aElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlE----KE~e~LK~EL~~LqeELEil~E 190 (1015)
..+...+..++.+...+...++.++..+-.+....+.+..++..+++.....+ .+...++.+|..+..+++.+..
T Consensus 151 ~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~ 230 (325)
T PF08317_consen 151 KEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKK 230 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466667777777777777777777777777777777777777776655443 4566777888888888887777
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccCCChHHHHHhHHHHhhhcC
Q 001773 191 EKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVR-KKLPGPAALAQMKMEVESLGR 249 (1015)
Q Consensus 191 Ele~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~r-k~lpgpaa~a~mk~ev~~~~~ 249 (1015)
++..++.....+.....++..++.++.+++..+...+. .+.....-+..+|.+|+.|-+
T Consensus 231 ~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 231 ELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEK 290 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 77777777777777777777788888888777776653 455567788999999998765
No 48
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.81 E-value=1.3 Score=49.74 Aligned_cols=77 Identities=18% Similarity=0.186 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 143 LIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQR 222 (1015)
Q Consensus 143 I~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqr 222 (1015)
+.....++..+...+.-+..++..+...+..|+..|..++.. +..++......+..+..++.++...++....+++.
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~---~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~ 287 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQR---LDEEREEYQAEIAELEEELAELREEMARQLREYQE 287 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHH---HHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444444444444444444444333 22333333333444444444444444444444433
No 49
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.80 E-value=1.2 Score=57.32 Aligned_cols=122 Identities=17% Similarity=0.204 Sum_probs=61.6
Q ss_pred hHHhHHHHHHHHHhhhcchhhHHHHhh-------hHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHH
Q 001773 3 EQIKELNEKLSAANSEISAKEDLVKQH-------TKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGAL 75 (1015)
Q Consensus 3 ~~~~~l~ekl~~a~~~~~~kd~lvkqh-------~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aL 75 (1015)
++|..|.+++...++-+..=|.++-+- ...-++|+. |..++..+|++.|++.-.....+.-...-.+||
T Consensus 1511 eqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~----a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai 1586 (1758)
T KOG0994|consen 1511 EQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAER----ARSRAEDVKGQAEDVVEALEEADVAQGEAQDAI 1586 (1758)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889999988888886666554321 123344443 334444455555555544444444444445666
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 76 KECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLS 133 (1015)
Q Consensus 76 Kec~~qlr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLe 133 (1015)
+...+-++.+++--. .+ ...+.--|+.-.....++.+++..+++++.+.....
T Consensus 1587 ~~a~~~~~~a~~~l~----kv-~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns 1639 (1758)
T KOG0994|consen 1587 QGADRDIRLAQQLLA----KV-QEETAAAEKLATSATQQLGELETRMEELKHKAAQNS 1639 (1758)
T ss_pred HhhHHHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 666666666554322 11 222222233334444444444444444444433333
No 50
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.75 E-value=0.2 Score=54.88 Aligned_cols=48 Identities=27% Similarity=0.424 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q 001773 804 HAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNE 851 (1015)
Q Consensus 804 rL~eLeaEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~~~ 851 (1015)
++..|..++..+..+..+|+.++..+......+...+..++.++.+..
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e 137 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLE 137 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666666666666666666666666666655444
No 51
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.74 E-value=0.27 Score=60.45 Aligned_cols=51 Identities=22% Similarity=0.259 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHH
Q 001773 40 WEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHE 90 (1015)
Q Consensus 40 wekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qlr~~reeqe 90 (1015)
++..+.|+.+|+.+|+++..+...+++-+..|...++.-..++...+.+.+
T Consensus 323 ~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~ 373 (594)
T PF05667_consen 323 QEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENE 373 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888777777777777777777666666555554444
No 52
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.69 E-value=3.2 Score=52.73 Aligned_cols=120 Identities=16% Similarity=0.202 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 111 FEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNE 190 (1015)
Q Consensus 111 LEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~E 190 (1015)
..+++..+..++.....++..+...++.+++.+ .....+.++..++.-......++.. ......++..+..+.+.+..
T Consensus 51 e~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E~er~~~ 128 (775)
T PF10174_consen 51 EAAELSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQAERERLQR 128 (775)
T ss_pred HHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555555555 4444444444444444444444444 45555556666666666777
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Q 001773 191 EKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLP 232 (1015)
Q Consensus 191 Ele~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lp 232 (1015)
++..++..++.+...+....+.+....+++.++..++.++-|
T Consensus 129 El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~ 170 (775)
T PF10174_consen 129 ELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGL 170 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 777777777777777888888888888888888888765544
No 53
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.68 E-value=4.9 Score=54.74 Aligned_cols=71 Identities=20% Similarity=0.282 Sum_probs=44.4
Q ss_pred HHhHHHHHHHHHhhhcchhhHHHHhhhHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHH
Q 001773 4 QIKELNEKLSAANSEISAKEDLVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIR 83 (1015)
Q Consensus 4 ~~~~l~ekl~~a~~~~~~kd~lvkqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qlr 83 (1015)
.++.|+++|+.+...+.....-+..|+ .+.++++..++-..+.+..++.-..-|++-|.....+|-
T Consensus 144 ~n~~l~~ql~ss~~~~~e~e~r~~e~~--------------s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll 209 (1822)
T KOG4674|consen 144 ENKDLNDQLKSSTKTLSELEARLQETQ--------------SEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLL 209 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 455566665555544444333333332 455567777777777777777777777777777777776
Q ss_pred hhhHH
Q 001773 84 NLKEE 88 (1015)
Q Consensus 84 ~~ree 88 (1015)
..|-+
T Consensus 210 ~~~re 214 (1822)
T KOG4674|consen 210 SLRRE 214 (1822)
T ss_pred HHHhh
Confidence 66554
No 54
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.68 E-value=4.8 Score=54.64 Aligned_cols=195 Identities=9% Similarity=0.061 Sum_probs=96.3
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHH-HHHHHHhhhHHHHHH
Q 001773 31 KVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQ-DFVLTKTKQWDKIRL 109 (1015)
Q Consensus 31 kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qlr~~reeqeqki~-~~~~~~~~e~e~~~~ 109 (1015)
.+-||| +|+. .+...-++.|+.+......+++.+.+|+.-|+.--+|+..+++-++..-. .....+...+...-.
T Consensus 283 ~liEEA-ag~r---~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~Le 358 (1486)
T PRK04863 283 VHLEEA-LELR---RELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLE 358 (1486)
T ss_pred HHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455665 5655 34444455566666666666666666666655555555555444332111 001222223333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----------HH
Q 001773 110 EFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYE----------LH 179 (1015)
Q Consensus 110 ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~E----------L~ 179 (1015)
+++.++.+....+...+.++..+...+..+...+..+..++..+...+..++.++......+..+..- ..
T Consensus 359 ELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdE 438 (1486)
T PRK04863 359 ELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTAD 438 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 34444444444445554555555555555555555554444444445554444444444444333221 12
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 001773 180 IVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRK 229 (1015)
Q Consensus 180 ~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk 229 (1015)
.+...++.........+..+..+..++..+...+..+......+....-+
T Consensus 439 eLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gk 488 (1486)
T PRK04863 439 NAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGE 488 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33334444555555555555556666666666666666666655555555
No 55
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.67 E-value=0.36 Score=49.11 Aligned_cols=62 Identities=19% Similarity=0.234 Sum_probs=29.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 160 LKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQ 221 (1015)
Q Consensus 160 LkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcq 221 (1015)
+.-||..++.+.......+....+.+......-+...+.+..+..+......++..++..+.
T Consensus 78 l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 78 LNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444455555555555555555555555544443
No 56
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.66 E-value=1.3 Score=54.73 Aligned_cols=55 Identities=25% Similarity=0.227 Sum_probs=46.7
Q ss_pred hhhhhHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHh
Q 001773 282 FQKENEFLTERLLAMEEETKMLKEALAKRNSELQASRNLCAKTASKLQSLEAQMQ 336 (1015)
Q Consensus 282 ~~~~~~~l~~rl~~~eee~k~lke~l~~~~~elq~sr~~~a~t~~kl~~~e~q~~ 336 (1015)
-++-+.-|+++|..++++...+|+.|.-|+.|++..+.......+.|.+..+.-.
T Consensus 193 Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q 247 (617)
T PF15070_consen 193 EQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQ 247 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555899999999999999999999999999999998888888888776544
No 57
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=96.64 E-value=0.66 Score=51.47 Aligned_cols=159 Identities=17% Similarity=0.231 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 001773 732 LEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAE 811 (1015)
Q Consensus 732 ~EeleqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLeaE 811 (1015)
+..|..|+..++.+..+-..-+=+++.+...|+...++.++-+.+...++..+.-+-+....+. ..-..+.-+
T Consensus 17 LqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~le-------k~rqKlshd 89 (307)
T PF10481_consen 17 LQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLE-------KTRQKLSHD 89 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHH-------HHHHHhhHH
Confidence 4578899999999999999999999999999999999999999999888885555444444443 333344444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh------hhccc----chhhhh-----hhhhHHHHHHHHH
Q 001773 812 VNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNEN------CAVCS----SEADEN-----KIKQDRDLAAAAE 876 (1015)
Q Consensus 812 l~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~~~~------~~lk~----q~~kdL-----KikqEkEIaaAee 876 (1015)
+......|..|+..+..-+.+++.+...++.++.+|++... ..+.. +..... .......+..+.+
T Consensus 90 lq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~~sk~e~L~e 169 (307)
T PF10481_consen 90 LQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQYYSDSKYEELQE 169 (307)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhhhhhhhHHHHHH
Confidence 44445555566666666666666677777777777776432 00001 110000 1223445667778
Q ss_pred HHHHHHHHHHHHHHHHHhccC
Q 001773 877 RLAECQETILLLGKQLKSLRP 897 (1015)
Q Consensus 877 KLAEcQeTI~sLEKQLKsLa~ 897 (1015)
||..-=+.-..|+-.++.|.-
T Consensus 170 kynkeveerkrle~e~k~lq~ 190 (307)
T PF10481_consen 170 KYNKEVEERKRLEAEVKALQA 190 (307)
T ss_pred HHHHHHHHHhhHHHHHHHHhc
Confidence 888877888899999999874
No 58
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.63 E-value=3.9 Score=52.89 Aligned_cols=110 Identities=20% Similarity=0.209 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH----------HHHHHHhHHH
Q 001773 731 SLEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQ----------LKCMAESYRS 800 (1015)
Q Consensus 731 s~EeleqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~q----------Lk~~~e~~ed 800 (1015)
+.-++.+++.++..+++.+..+...++++...++.+...+..++..+......+.++++- ++.+...+.+
T Consensus 666 le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~~~~~~~~~l~~ei~~ 745 (1074)
T KOG0250|consen 666 LEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEEKQVDISKLEDLAREIKK 745 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHH
Confidence 344677788888888888888888888888888888888888888888887777776662 2222222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 001773 801 LETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKC 840 (1015)
Q Consensus 801 LesrL~eLeaEl~eLqeKVesLE~ELe~ek~~~eEleaK~ 840 (1015)
....+.+.++.+..++++++.++.+...+...-.....++
T Consensus 746 ~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l 785 (1074)
T KOG0250|consen 746 KEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKL 785 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444444333333
No 59
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=96.61 E-value=0.95 Score=48.22 Aligned_cols=156 Identities=15% Similarity=0.178 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 001773 42 KAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQE 121 (1015)
Q Consensus 42 kae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qlr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEke 121 (1015)
.||++|++++..+-.+....-..++|+.-+ .+...+..+.-.|.+.-+ -++.......+..-..++.+
T Consensus 1 ~ae~~va~lnrri~~leeele~aqErl~~a----~~KL~Eaeq~~dE~er~~-Kv~enr~~kdEE~~e~~e~q------- 68 (205)
T KOG1003|consen 1 KAEADVAALNRRIQLLEEELDRAQERLATA----LQKLEEAEQAADESERGM-KVIENRAQKLEEKMEAQEAQ------- 68 (205)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhcccHHHHHH-HHHHHHHHhhHHHHHHHHHH-------
Confidence 378899999888888777777777776543 333444445555544322 22222333322222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001773 122 LLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEA 201 (1015)
Q Consensus 122 LeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaea 201 (1015)
+......-+.....+.+....+.-+++++.-..+|.+..+..+..|.++++.+...+..+...-+...+..+.
T Consensus 69 -------LkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~ 141 (205)
T KOG1003|consen 69 -------LKEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEK 141 (205)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHH
Confidence 2222233333333444555556666777777777777777777777777777777777777766666666666
Q ss_pred HHHHHHHHHHHHHHH
Q 001773 202 ANKQHMEGVKKIAKL 216 (1015)
Q Consensus 202 l~KQ~lEl~KKLaKL 216 (1015)
...++..+..+|...
T Consensus 142 ~e~~ik~ltdKLkEa 156 (205)
T KOG1003|consen 142 YEEELKELTDKLKEA 156 (205)
T ss_pred HHHHHHHHHHHHhhh
Confidence 666666666655443
No 60
>PRK03918 chromosome segregation protein; Provisional
Probab=96.57 E-value=3.9 Score=52.22 Aligned_cols=27 Identities=33% Similarity=0.363 Sum_probs=13.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhHH
Q 001773 289 LTERLLAMEEETKMLKEALAKRNSELQ 315 (1015)
Q Consensus 289 l~~rl~~~eee~k~lke~l~~~~~elq 315 (1015)
+..++..++.+.+.|++-+..-+.++.
T Consensus 457 ~~~ei~~l~~~~~~l~~~~~~l~~~~~ 483 (880)
T PRK03918 457 YTAELKRIEKELKEIEEKERKLRKELR 483 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554444444444
No 61
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.55 E-value=3.6 Score=51.69 Aligned_cols=283 Identities=20% Similarity=0.285 Sum_probs=135.8
Q ss_pred HhhhHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHH---HHHHhhh
Q 001773 27 KQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDF---VLTKTKQ 103 (1015)
Q Consensus 27 kqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qlr~~reeqeqki~~~---~~~~~~e 103 (1015)
..|-+||...+ ...-..|.....+-..+..||..|+.=||.+-.++..++.|.++ ++-. +.+....
T Consensus 5 ~~~~~~~~~g~----------~~Ee~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~r-l~~~~~~~~~~~~~ 73 (717)
T PF09730_consen 5 SNHKKVAKDGE----------EREESLLQESASKEAYLQQRILELENELKQLRQELSNVQAENER-LSQLNQELRKECED 73 (717)
T ss_pred hHHHHHHhcch----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 45666665432 23345667777777888999999999999999999999999984 3222 2223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001773 104 WDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSK 183 (1015)
Q Consensus 104 ~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~Lqe 183 (1015)
.|.-+..+...+.++..+-.++-.+...|+ ++...+.. ++.+|++ .+-+.+.++.+|..+.+
T Consensus 74 ~e~~~~~lr~e~ke~K~rE~rll~dyselE-------eENislQK-------qvs~Lk~----sQvefE~~Khei~rl~E 135 (717)
T PF09730_consen 74 LELERKRLREEIKEYKFREARLLQDYSELE-------EENISLQK-------QVSVLKQ----SQVEFEGLKHEIKRLEE 135 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHH-------HHHHHHHH-------HHHHHHH----hHHHHHHHHHHHHHHHH
Confidence 333333444444443333333322222222 22222222 2222221 11223345555555555
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hh-hccCCChHHHHHhHHHHhhhcC---------CcC
Q 001773 184 ELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRG-LV-RKKLPGPAALAQMKMEVESLGR---------DYG 252 (1015)
Q Consensus 184 ELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~-l~-rk~lpgpaa~a~mk~ev~~~~~---------~~~ 252 (1015)
+.+.++..++...+--+-+.+|+.+.-..|..-.+.-..++- |- +...+.+.-+..|-..++.+.. ..+
T Consensus 136 e~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkEL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (717)
T PF09730_consen 136 EIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKELDQHLNIESISYLSNLAISLDGLKFSEDPRAATEPNN 215 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccchhhcccccccccccccccCCCC
Confidence 555555555555444444444444444333221111111110 00 0111111111122222222200 001
Q ss_pred C-----------ccccCCC-----CCC-CCCCCCCCcccchhhhH-hhhhhhHHHHHHHHhHHHHHHHHHHHHHhhhhhH
Q 001773 253 D-----------SRLKRSP-----VKP-TSPHLSPVSEFSLDNVQ-KFQKENEFLTERLLAMEEETKMLKEALAKRNSEL 314 (1015)
Q Consensus 253 ~-----------~r~rr~~-----~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~l~~rl~~~eee~k~lke~l~~~~~el 314 (1015)
| +..++.+ +.| .+-...|.|.-..|=+. -..-++.-|-.+|.-||-|...|...|-.-...|
T Consensus 216 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lv~DLfSEl~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qL 295 (717)
T PF09730_consen 216 DDEEENGGLNGGPGLAKGNGDNRMSTPRKSESFSPAPSLVSDLFSELNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQL 295 (717)
T ss_pred chhhhcchhhccchhcccccccccCCCCCCCCCCCCCcccchhhhhcchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 1 0001000 011 00012232221223222 1234677789999999999999988877777777
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhh
Q 001773 315 QASRNLCAKTASKLQSLEAQMQTS 338 (1015)
Q Consensus 315 q~sr~~~a~t~~kl~~~e~q~~~~ 338 (1015)
..++..+..--.|+..|-.++.-+
T Consensus 296 e~a~~als~q~eki~~L~e~l~aL 319 (717)
T PF09730_consen 296 EHAQGALSEQQEKINRLTEQLDAL 319 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777776666666677776644
No 62
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.54 E-value=0.31 Score=53.47 Aligned_cols=49 Identities=20% Similarity=0.294 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 734 EFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQK 782 (1015)
Q Consensus 734 eleqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqe 782 (1015)
.|.+++.+++.+...+...+..++.+..++..++..|.++..++..++.
T Consensus 32 ~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~ 80 (239)
T COG1579 32 ALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEE 80 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444443333
No 63
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.52 E-value=3 Score=51.39 Aligned_cols=163 Identities=13% Similarity=0.113 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHhhhHHHHH-----HHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 73 GALKECMRQIRNLKEEHEQ-----KLQDFVLTKTK----QWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNML 143 (1015)
Q Consensus 73 ~aLKec~~qlr~~reeqeq-----ki~~~~~~~~~----e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI 143 (1015)
+-|+||..+++++..|-|. --+.++-+|-+ +-|-+..++-.+|..++.++.+++.-+.. ..+.-
T Consensus 446 DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~-------Kee~E 518 (961)
T KOG4673|consen 446 DELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRD-------KEETE 518 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhh-------HHHHH
Confidence 6799999999999999882 22333333332 22222233333344444444444433333 22222
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 144 IKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEK-NMSMRSAEAANKQHMEGVKKIAKLEAECQR 222 (1015)
Q Consensus 144 ~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEl-e~s~qsaeal~KQ~lEl~KKLaKLEaEcqr 222 (1015)
-.+.+.+.+..+++.-.+....+....++.|+.....++.-++.....+ ...+-..+.+..++..++..+..|...+++
T Consensus 519 k~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~ 598 (961)
T KOG4673|consen 519 KLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSK 598 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233333333333333333333333333333333333333322222211 011111246666677777766666666644
Q ss_pred Hh-hhhhccCCChHHHHHhHHHHhhhcC
Q 001773 223 LR-GLVRKKLPGPAALAQMKMEVESLGR 249 (1015)
Q Consensus 223 Lr-~l~rk~lpgpaa~a~mk~ev~~~~~ 249 (1015)
.. .++||- ..||-|++.|.|
T Consensus 599 ~Eq~aarrE-------d~~R~Ei~~Lqr 619 (961)
T KOG4673|consen 599 KEQQAARRE-------DMFRGEIEDLQR 619 (961)
T ss_pred HHHHHHHHH-------HHHHHHHHHHHH
Confidence 33 344442 346666666554
No 64
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.51 E-value=1 Score=56.57 Aligned_cols=54 Identities=30% Similarity=0.331 Sum_probs=37.3
Q ss_pred hhhHHHHHHHHHHHHhHHH----HhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHH
Q 001773 38 SGWEKAEAEALALKNHLES----VTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQ 91 (1015)
Q Consensus 38 ~gwekae~e~~~lK~~Le~----~~~q~~~le~rv~hLd~aLKec~~qlr~~reeqeq 91 (1015)
.|.+.+-.|+.-++.+|+. +.--...++.++..|+++|-+--++....|+|++|
T Consensus 333 ~~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eq 390 (980)
T KOG0980|consen 333 LQIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQ 390 (980)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3555566677777777663 33334457788888888888888888888888774
No 65
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.50 E-value=0.68 Score=58.02 Aligned_cols=116 Identities=17% Similarity=0.147 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 111 FEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEE-KSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRN 189 (1015)
Q Consensus 111 LEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~ee-iErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~ 189 (1015)
+..+..+++.++.+++.++...++++..+..++.++..- .+ .+.+..+|..-+..++..+..|+.-|..-..-...+=
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e-~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLf 621 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKE-SEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLF 621 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 444555556666666666666666666665555444432 22 3445666666666666666666666665555544455
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001773 190 EEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLV 227 (1015)
Q Consensus 190 EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~ 227 (1015)
.-+-..+++++.++.++....++|..|.+.+..+-+++
T Consensus 622 saLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~ 659 (697)
T PF09726_consen 622 SALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVM 659 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 55555666666666666666666666666666666654
No 66
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.50 E-value=0.36 Score=59.30 Aligned_cols=163 Identities=23% Similarity=0.228 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH----------HHHHHHHHHHhHHHHH
Q 001773 733 EEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSL----------AETQLKCMAESYRSLE 802 (1015)
Q Consensus 733 EeleqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~se----------lE~qLk~~~e~~edLe 802 (1015)
.+++.|+.++..+...+..+...++.+...+..+...+.+.+.....++..+.. .+..+..+......-.
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~ 407 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASE 407 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 456666666666666666666666666666666655555555555555443332 2333433333333333
Q ss_pred HHHHHHH-----------HHHHHH--------------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhccc
Q 001773 803 THAQELE-----------AEVNLL--------------RAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCS 857 (1015)
Q Consensus 803 srL~eLe-----------aEl~eL--------------qeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~~~~~~lk~ 857 (1015)
.++..+. .++.++ ..+|..+..++..+...+..-...+.+|..+++++.+.....
T Consensus 408 ~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs 487 (594)
T PF05667_consen 408 QRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRS 487 (594)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 3333322 233333 333444444444444444444445555555555555421111
Q ss_pred ---chhhhh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001773 858 ---SEADEN---KIKQDRDLAAAAERLAECQETILLLGKQLKSL 895 (1015)
Q Consensus 858 ---q~~kdL---KikqEkEIaaAeeKLAEcQeTI~sLEKQLKsL 895 (1015)
....++ --+|..+|...-......|++|+.+.-+|.+-
T Consensus 488 ~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~Rt 531 (594)
T PF05667_consen 488 AYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRT 531 (594)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 111111 23467799999999999999999999999754
No 67
>PRK09039 hypothetical protein; Validated
Probab=96.50 E-value=0.21 Score=57.53 Aligned_cols=119 Identities=18% Similarity=0.175 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHH
Q 001773 732 LEEFEELKLEKDNLATDLARCTEN-------LEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETH 804 (1015)
Q Consensus 732 ~EeleqLEsEkeelE~eLee~~ek-------lEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesr 804 (1015)
.+++..++.++..+-..+..-+.. +..+..++..++...+.|+..++........++.++..+...+......
T Consensus 52 ~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~ 131 (343)
T PRK09039 52 DSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQV 131 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHH
Confidence 456667777766666444433333 3333333333333333333333322222234444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Q 001773 805 AQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRN 850 (1015)
Q Consensus 805 L~eLeaEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~~ 850 (1015)
+.+...++..|+..|.+|+..+..+...+...+.+..+.+.+|..+
T Consensus 132 ~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 132 SARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL 177 (343)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555544444444444444444444443
No 68
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.49 E-value=1.9 Score=52.92 Aligned_cols=15 Identities=13% Similarity=0.217 Sum_probs=8.2
Q ss_pred HHHHHHHHHhhhhhc
Q 001773 215 KLEAECQRLRGLVRK 229 (1015)
Q Consensus 215 KLEaEcqrLr~l~rk 229 (1015)
.+..++.++..-+..
T Consensus 452 ~~~~~i~~l~~~L~~ 466 (569)
T PRK04778 452 EVSDEIEALAEELEE 466 (569)
T ss_pred HHHHHHHHHHHHhcc
Confidence 345555555555555
No 69
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.48 E-value=0.3 Score=49.68 Aligned_cols=116 Identities=20% Similarity=0.169 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001773 104 WDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSK 183 (1015)
Q Consensus 104 ~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~Lqe 183 (1015)
|++.......++...+.+-+.++.....+.+.++..+.....+....+.....+.-+++.+..+..+..+|..++..+..
T Consensus 1 de~K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~s 80 (140)
T PF10473_consen 1 DEEKFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRS 80 (140)
T ss_pred CcHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677777777777777777777777777777777766666666666666666777777777777777777777777
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 184 ELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAE 219 (1015)
Q Consensus 184 ELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaE 219 (1015)
+.+.+..++...+..+..+.........-|..++++
T Consensus 81 Ek~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 81 EKENLDKELQKKQEKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 777777766666666666666666666666666665
No 70
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.43 E-value=1.2 Score=55.66 Aligned_cols=154 Identities=19% Similarity=0.158 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001773 738 LKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRA 817 (1015)
Q Consensus 738 LEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLeaEl~eLqe 817 (1015)
+...+.+++.++..++..+.........+.....++....+.++.....+-.+++.++.+-.-+=..|.+++.|...|+.
T Consensus 32 ~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQK 111 (717)
T PF09730_consen 32 LQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQK 111 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444446665555555555567778888888888
Q ss_pred HHHHHHH---HHHHHHhhhHHHHHHHHHHHHHHHhhhhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001773 818 KIESLEN---ELQDEKMSHHNAMAKCKELEEQLQRNENCAVCSSEADENKIKQDRDLAAAAERLAECQETILLLGKQLKS 894 (1015)
Q Consensus 818 KVesLE~---ELe~ek~~~eEleaK~keLEeQLe~~~~~~lk~q~~kdLKikqEkEIaaAeeKLAEcQeTI~sLEKQLKs 894 (1015)
.|+.|+. |++..+..+.-+...+.-|..|++... -|+...|+.+..|-+-+..=|++-..|.+.|-.
T Consensus 112 qvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~----------rLk~iae~qleEALesl~~EReqk~~LrkEL~~ 181 (717)
T PF09730_consen 112 QVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAA----------RLKEIAEKQLEEALESLKSEREQKNALRKELDQ 181 (717)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888864 445445544445555555555554433 235556778888888888899999999999998
Q ss_pred ccCCCcc
Q 001773 895 LRPQSEV 901 (1015)
Q Consensus 895 La~~~e~ 901 (1015)
+....++
T Consensus 182 ~~~~~~~ 188 (717)
T PF09730_consen 182 HLNIESI 188 (717)
T ss_pred hcCcccc
Confidence 7776554
No 71
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.41 E-value=3.6 Score=50.06 Aligned_cols=140 Identities=17% Similarity=0.214 Sum_probs=61.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 80 RQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQ---ELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAE 156 (1015)
Q Consensus 80 ~qlr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEk---eLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgE 156 (1015)
++|..+|+.+..-+.+. ..-++|++++|.++..-+..... +.+............++.+..+|..+++.+......
T Consensus 116 ~ele~~~~q~~~~~~eL-~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a 194 (522)
T PF05701_consen 116 AELESAREQYASAVAEL-DSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLA 194 (522)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666776666555444 55667777777776665543322 222222223333333444444444444443332221
Q ss_pred HHHH-HhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001773 157 IELL-KGNIEQ---CEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLR 224 (1015)
Q Consensus 157 i~LL-kERIen---lEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr 224 (1015)
..-. ++++.. .......++.++....++++.+..++.. +..+..++......+..|..++....
T Consensus 195 ~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~----~k~Le~kL~~a~~~l~~Lq~El~~~~ 262 (522)
T PF05701_consen 195 HIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEA----AKDLESKLAEASAELESLQAELEAAK 262 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 111111 1123334444444555555555554422 23344444444455555555444433
No 72
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.41 E-value=3.1 Score=51.02 Aligned_cols=141 Identities=21% Similarity=0.307 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 001773 109 LEFEAKIANFEQELLRSAAENATLSRSLQERSN----------MLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYEL 178 (1015)
Q Consensus 109 ~ELEaKLaElEkeLeelkaEl~aLeeqLeelqe----------eI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL 178 (1015)
...+..+..+...+..++..+..+...++..+. .+..+..++..+......+..++.....-...+...+
T Consensus 302 ~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l 381 (560)
T PF06160_consen 302 KYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEEL 381 (560)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHH
Confidence 333344444444445555555555555444433 3345566677777777777788887777788899999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hccCCC-hHHHH----HhHHHHhhhcC
Q 001773 179 HIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLV-RKKLPG-PAALA----QMKMEVESLGR 249 (1015)
Q Consensus 179 ~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~-rk~lpg-paa~a----~mk~ev~~~~~ 249 (1015)
..+.+.+..+..+.......+..+.+......+++.++...+...+-.| +..||| |.-.- ...++|+.+..
T Consensus 382 ~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~ 458 (560)
T PF06160_consen 382 EEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSD 458 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998877666 567999 66543 34555555554
No 73
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.39 E-value=5.3 Score=51.77 Aligned_cols=16 Identities=38% Similarity=0.607 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHHH
Q 001773 584 SQELVAAITQIHDFVL 599 (1015)
Q Consensus 584 ~~~l~~~~~~i~~~v~ 599 (1015)
..+|..-|.+|-+|+.
T Consensus 1470 ~~el~~Li~~v~~Flt 1485 (1758)
T KOG0994|consen 1470 NRELRNLIQQVRDFLT 1485 (1758)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3466667777777764
No 74
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.37 E-value=5.1 Score=51.38 Aligned_cols=94 Identities=27% Similarity=0.190 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001773 149 EKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVR 228 (1015)
Q Consensus 149 eiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~r 228 (1015)
.+..+...+....-+++++.+++...+-++.....+-.....+++.++..++.+.+++..+-=++...++-.++...|.+
T Consensus 407 ~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~~e~l~q~~~~l~~ 486 (1174)
T KOG0933|consen 407 TLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQEEALKQRRAKLHE 486 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444444444444444444444444444333333
Q ss_pred ccCCChHHHHHhHHHHhhhcC
Q 001773 229 KKLPGPAALAQMKMEVESLGR 249 (1015)
Q Consensus 229 k~lpgpaa~a~mk~ev~~~~~ 249 (1015)
- +-+.+++++.|-+
T Consensus 487 ~-------~~~lk~~~~~l~a 500 (1174)
T KOG0933|consen 487 D-------IGRLKDELDRLLA 500 (1174)
T ss_pred H-------HHHHHHHHHHHHh
Confidence 2 2467778877654
No 75
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.35 E-value=3.9 Score=49.71 Aligned_cols=283 Identities=19% Similarity=0.233 Sum_probs=139.9
Q ss_pred HHHHhhhHHHHHHhhhhHHHHHHHHHHHHhHHHH----hhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001773 24 DLVKQHTKVAEEAVSGWEKAEAEALALKNHLESV----TLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLT 99 (1015)
Q Consensus 24 ~lvkqh~kvaeeav~gwekae~e~~~lK~~Le~~----~~q~~~le~rv~hLd~aLKec~~qlr~~reeqeqki~~~~~~ 99 (1015)
||+++|.++.+--..--+++|-.+.. |--+|-+ ..=....++ .+.|+.-||-..++.-..- ..
T Consensus 169 dlI~~~t~~v~~~~l~q~~~ed~~m~-k~f~dy~~~~Y~~fl~g~d~-~~~~~~Elk~~l~~~~~~i-----------~~ 235 (581)
T KOG0995|consen 169 DLIRINTALVEDSPLEQEEAEDKTMN-KLFFDYTIRSYTSFLKGEDN-SSELEDELKHRLEKYFTSI-----------AN 235 (581)
T ss_pred HHHHHhHHHhhccchhccchHHHHHH-HHHHHHHHHHHHHHhccCcc-cchHHHHHHHHHHHHHHHH-----------HH
Confidence 89999999988765534556766666 4443333 333333333 7777777776665554421 22
Q ss_pred HhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 001773 100 KTKQWDKIRLEFEAKIANF---EQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKY 176 (1015)
Q Consensus 100 ~~~e~e~~~~ELEaKLaEl---EkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~ 176 (1015)
+..-.++.-.+++++|.+. ..+.+.++.....+...+...+.-...+.......++.++-++..++-.+.+++.|+.
T Consensus 236 ~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~ 315 (581)
T KOG0995|consen 236 EIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQK 315 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222333333333333 1233333333444444444444444444444444444444444444444443333333
Q ss_pred HHHHHHHH----------HHHHHHHHHHhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhhhhhccCCChH
Q 001773 177 ELHIVSKE----------LEIRNEEKNMSMRSAEAANKQHMEGVKKI-----------AKLEAECQRLRGLVRKKLPGPA 235 (1015)
Q Consensus 177 EL~~LqeE----------LEil~EEle~s~qsaeal~KQ~lEl~KKL-----------aKLEaEcqrLr~l~rk~lpgpa 235 (1015)
+...+... .+..+.|++.+.+.+..+..+...+.+++ ..++..+..+..++|+=.-| +
T Consensus 316 ~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~-~ 394 (581)
T KOG0995|consen 316 ENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLG-I 394 (581)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 33333322 33344444444444444444444443333 33344444555555543322 1
Q ss_pred HHHHhHHHHhhhcCCcCCccccCCCCCCCCCCCCCCcccchhhhHhhhhhhHHHHHHHHhHHHHHHHHHHHHHhhhhhHH
Q 001773 236 ALAQMKMEVESLGRDYGDSRLKRSPVKPTSPHLSPVSEFSLDNVQKFQKENEFLTERLLAMEEETKMLKEALAKRNSELQ 315 (1015)
Q Consensus 236 a~a~mk~ev~~~~~~~~~~r~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~eee~k~lke~l~~~~~elq 315 (1015)
|--.| + ++ |.|-.++.- ..+....--.-.....+-..++|..-+.+.-+|-+.+..+++-+-
T Consensus 395 ~~~~~-n----~~---------~~pe~~~~~----~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~ 456 (581)
T KOG0995|consen 395 AENSK-N----LE---------RNPERAATN----GVDLKSYVKPLLKELLDEISEELHEAENELETLQEHFSNKASTIE 456 (581)
T ss_pred HHHhc-c----CC---------cCCccCccc----cccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11000 1 11 222222110 011000000012233455778899999999999999999999888
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhh
Q 001773 316 ASRNLCAKTASKLQSLEAQMQTS 338 (1015)
Q Consensus 316 ~sr~~~a~t~~kl~~~e~q~~~~ 338 (1015)
..+.....+-++|..+++.....
T Consensus 457 E~~~~l~~~~~el~~~~~~~~~~ 479 (581)
T KOG0995|consen 457 EKIQILGEIELELKKAESKYELK 479 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888877754
No 76
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.27 E-value=3 Score=51.03 Aligned_cols=189 Identities=15% Similarity=0.111 Sum_probs=102.6
Q ss_pred HHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHH-------HHHHhhhHHHHHHHHHHHHHH
Q 001773 45 AEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDF-------VLTKTKQWDKIRLEFEAKIAN 117 (1015)
Q Consensus 45 ~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qlr~~reeqeqki~~~-------~~~~~~e~e~~~~ELEaKLaE 117 (1015)
+|+.-.=..|+++++....||.++.+|-+.|...---.+..+-+--.....+ +..-+.+.+.++..+...++.
T Consensus 235 aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~ 314 (629)
T KOG0963|consen 235 AEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREK 314 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777778899999999999999999999998876544444311111111111 122222333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-------------------HHHHHHHHHHHH
Q 001773 118 FEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQ-------------------CEREINSAKYEL 178 (1015)
Q Consensus 118 lEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIen-------------------lEKE~e~LK~EL 178 (1015)
...++..+..++.+....++++.+.+... ...+.+..++.+|++ +++ +-..+..|..+.
T Consensus 315 ~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ELsiLk~-ief~~se~a~~~~~~~~~leslLl~knr~lq~e~ 392 (629)
T KOG0963|consen 315 HKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKKELSILKA-IEFGDSEEANDEDETAKTLESLLLEKNRKLQNEN 392 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHH-hhcCCcccccccccccchHHHHHHHHHhhhhHHH
Confidence 33333333333333333333332222211 234445555555543 111 122334455555
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHHH
Q 001773 179 HIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAAL 237 (1015)
Q Consensus 179 ~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa~ 237 (1015)
..+.........++.....+.+.+..+..+...-++++|..+..... +...|||.+.
T Consensus 393 a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ke~i~klE~dl~~~~~--~~~~~~~~~~ 449 (629)
T KOG0963|consen 393 ASLRVANSGLSGRITELSKKGEELEAKATEQKELIAKLEQDLLKVQV--SPPAEGATAR 449 (629)
T ss_pred HHHhccccccchhHHHHHhhhhhhHHHHHHHHHHHHHHHhhHhhccc--CCCCCcchhh
Confidence 55555444555566667777777777777777777888888877766 5677777653
No 77
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.20 E-value=2.9 Score=48.56 Aligned_cols=10 Identities=30% Similarity=0.497 Sum_probs=4.3
Q ss_pred HhHHHHhhhc
Q 001773 239 QMKMEVESLG 248 (1015)
Q Consensus 239 ~mk~ev~~~~ 248 (1015)
.+..||+.|.
T Consensus 270 ~leqeva~le 279 (499)
T COG4372 270 RLEQEVAQLE 279 (499)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 78
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.14 E-value=0.36 Score=54.63 Aligned_cols=99 Identities=22% Similarity=0.295 Sum_probs=66.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhcccchhhhhhhhhHH
Q 001773 790 QLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCSSEADENKIKQDR 869 (1015)
Q Consensus 790 qLk~~~e~~edLesrL~eLeaEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~~~~~~lk~q~~kdLKikqEk 869 (1015)
++......+..++..|....-+...+++.|..|-.++-+++..+..+...-.+|...|..... .......
T Consensus 207 QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske----------~Q~~L~a 276 (306)
T PF04849_consen 207 QLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKE----------SQRQLQA 276 (306)
T ss_pred HhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH----------HHHHHHH
Confidence 333444444445555555566666666666666666666666666666666666666654432 1222345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 001773 870 DLAAAAERLAECQETILLLGKQLKSLRPQ 898 (1015)
Q Consensus 870 EIaaAeeKLAEcQeTI~sLEKQLKsLa~~ 898 (1015)
++..+..||++|...+.....+||.++..
T Consensus 277 EL~elqdkY~E~~~mL~EaQEElk~lR~~ 305 (306)
T PF04849_consen 277 ELQELQDKYAECMAMLHEAQEELKTLRKR 305 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 79999999999999999999999999864
No 79
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.10 E-value=1.1 Score=52.73 Aligned_cols=73 Identities=16% Similarity=0.216 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHH
Q 001773 733 EEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHA 805 (1015)
Q Consensus 733 EeleqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL 805 (1015)
..+.+++.++...+..+....++...+..+|..++..+..++.+|......+..++.+|..+...+..++.+-
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3566777777777777777777777777777777777777766666666655555555555555554444443
No 80
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.07 E-value=7.1 Score=50.07 Aligned_cols=110 Identities=17% Similarity=0.149 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001773 126 AAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQ 205 (1015)
Q Consensus 126 kaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ 205 (1015)
+.++..+...++........+..+++.++.+..-.-++++.++..+...++++.....+...+..+++.+......+|..
T Consensus 396 r~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWRE 475 (1200)
T KOG0964|consen 396 RSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWRE 475 (1200)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777777777888888888888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCChH
Q 001773 206 HMEGVKKIAKLEAECQRLRGLVRKKLPGPA 235 (1015)
Q Consensus 206 ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpa 235 (1015)
...+...|+.++..+.+..-.+|...|+|-
T Consensus 476 E~~l~~~i~~~~~dl~~~~~~L~~~~~r~v 505 (1200)
T KOG0964|consen 476 EKKLRSLIANLEEDLSRAEKNLRATMNRSV 505 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 999999999999999888888888877553
No 81
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.78 E-value=8.2 Score=48.47 Aligned_cols=211 Identities=17% Similarity=0.182 Sum_probs=100.5
Q ss_pred HHhhhHHHHHHhhhh---------HHHHHH--HHHHHHhHHHHhhhhhhHHHHHhh----hhHHHHHHHHH---HHhhhH
Q 001773 26 VKQHTKVAEEAVSGW---------EKAEAE--ALALKNHLESVTLSKLTAEDRAAH----LDGALKECMRQ---IRNLKE 87 (1015)
Q Consensus 26 vkqh~kvaeeav~gw---------ekae~e--~~~lK~~Le~~~~q~~~le~rv~h----Ld~aLKec~~q---lr~~re 87 (1015)
..--+|+.+|-..-| |+.+-| |-.++..|++..+-....-.+... |..+-++-.+| ||++--
T Consensus 261 lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~Ll 340 (1265)
T KOG0976|consen 261 LQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALL 340 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455556554444 444322 334555566555554443333221 22233333333 344444
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 001773 88 EHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQC 167 (1015)
Q Consensus 88 eqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenl 167 (1015)
|+..++-.. ..+..++||.+..+......++..+...+.++..|.....+++++|.++...+- ++...
T Consensus 341 Earrk~egf-ddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if-----------~~e~~ 408 (1265)
T KOG0976|consen 341 EARRKAEGF-DDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIF-----------RLEQG 408 (1265)
T ss_pred HHHHhhcch-hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------hhhhc
Confidence 444433322 455555555555555444444444444433333333333333333322222211 33444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHHHHHhHHHHhhh
Q 001773 168 EREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKMEVESL 247 (1015)
Q Consensus 168 EKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa~a~mk~ev~~~ 247 (1015)
.++.+..+.+|....++++.+..++.....+....+--.....-+....-..|.++-.-+|-.--.|+-=-|.-.|+++|
T Consensus 409 ~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sle~qrKVeqe~eml 488 (1265)
T KOG0976|consen 409 KKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSLEKQRKVEQEYEML 488 (1265)
T ss_pred cchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhChhhhcchHHHHHHH
Confidence 45566666666666666666666666665555555444444444445555556665555555555555444555666655
Q ss_pred c
Q 001773 248 G 248 (1015)
Q Consensus 248 ~ 248 (1015)
-
T Consensus 489 K 489 (1265)
T KOG0976|consen 489 K 489 (1265)
T ss_pred H
Confidence 3
No 82
>PRK11281 hypothetical protein; Provisional
Probab=95.70 E-value=4.4 Score=53.46 Aligned_cols=173 Identities=12% Similarity=0.107 Sum_probs=75.8
Q ss_pred HHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 55 ESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVL-TKTKQWDKIRLEFEAKIANFEQELLRSAAENATLS 133 (1015)
Q Consensus 55 e~~~~q~~~le~rv~hLd~aLKec~~qlr~~reeqeqki~~~~~-~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLe 133 (1015)
+...++..+++.++.+....+++..++|...+.+...-...... .-..+.|..-.+++..+.+.++.+..+..++..+.
T Consensus 76 ~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~q 155 (1113)
T PRK11281 76 DRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQ 155 (1113)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33334444455555555555555555555444322211000000 00122344444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001773 134 RSLQERSNMLIKISEEKSQAEAEIELLKG-NIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKK 212 (1015)
Q Consensus 134 eqLeelqeeI~EL~eeiErlEgEi~LLkE-RIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KK 212 (1015)
...+..+..+.+....+..++.+++.... .-.-.+.....|+.|+..+..+.+....++.......+-.+.++.....+
T Consensus 156 T~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~ 235 (1113)
T PRK11281 156 TQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTAR 235 (1113)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 44455555555555444444443332110 00000122333444444444444444444444444455555555556666
Q ss_pred HHHHHHHHHHHhhhh
Q 001773 213 IAKLEAECQRLRGLV 227 (1015)
Q Consensus 213 LaKLEaEcqrLr~l~ 227 (1015)
+..+++.++.++..+
T Consensus 236 ~~~~~~~~~~lq~~i 250 (1113)
T PRK11281 236 IQRLEHQLQLLQEAI 250 (1113)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666555544
No 83
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.68 E-value=7.9 Score=47.60 Aligned_cols=50 Identities=26% Similarity=0.267 Sum_probs=37.8
Q ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHH
Q 001773 283 QKENEFLTERLLAMEEETKMLKEALAKRNSELQASRNLCAKTASKLQSLEA 333 (1015)
Q Consensus 283 ~~~~~~l~~rl~~~eee~k~lke~l~~~~~elq~sr~~~a~t~~kl~~~e~ 333 (1015)
.++.+-...++.++|-++++.+..|..--..|+ +|+-|=+-=..|+.|.+
T Consensus 309 ~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~-~~sDYeeIK~ELsiLk~ 358 (629)
T KOG0963|consen 309 VEEREKHKAQISALEKELKAKISELEELKEKLN-SRSDYEEIKKELSILKA 358 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccHHHHHHHHHHHHH
Confidence 345666788899999999988888888888887 56777776666666654
No 84
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.65 E-value=4.4 Score=46.18 Aligned_cols=173 Identities=12% Similarity=0.136 Sum_probs=114.8
Q ss_pred HHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHH--HHHHHhhhHH---------------------HHHHHHH
Q 001773 56 SVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQD--FVLTKTKQWD---------------------KIRLEFE 112 (1015)
Q Consensus 56 ~~~~q~~~le~rv~hLd~aLKec~~qlr~~reeqeqki~~--~~~~~~~e~e---------------------~~~~ELE 112 (1015)
....+|..|..|+..|++.|...-.++.++|-+=-.|--- +.....-+++ ---..|+
T Consensus 87 sLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq 166 (306)
T PF04849_consen 87 SLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQ 166 (306)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHH
Confidence 3457788889999999999888888777776544322111 0000000000 0013455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 001773 113 AKIANFEQELLRSAAENATLSRS-----------LQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIV 181 (1015)
Q Consensus 113 aKLaElEkeLeelkaEl~aLeeq-----------LeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~L 181 (1015)
.++..++.+...++.+...|... +..+-.++...+..+..+..++..-.+.......++.+|..++..+
T Consensus 167 ~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqivdl 246 (306)
T PF04849_consen 167 EKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDL 246 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555665555555555555411 2223344444555566666666666777777788888888888899
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001773 182 SKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVR 228 (1015)
Q Consensus 182 qeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~r 228 (1015)
+.++..+..+.+.+.+.+.....-+..+..++..++.......+|+.
T Consensus 247 Q~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~ 293 (306)
T PF04849_consen 247 QQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLH 293 (306)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99989999999999999888888888899999998888888777764
No 85
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=95.65 E-value=5.2 Score=45.28 Aligned_cols=192 Identities=18% Similarity=0.191 Sum_probs=106.1
Q ss_pred ChhHHhHHHHHHHHHhhhc----chhhHHHHhhhHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHH
Q 001773 1 MEEQIKELNEKLSAANSEI----SAKEDLVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALK 76 (1015)
Q Consensus 1 l~~~~~~l~ekl~~a~~~~----~~kd~lvkqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLK 76 (1015)
||..|.+.--+|++|+.+. ++|-||----...-.|=+.=++|.--++..+|-.-+-..+|.+.+|.++..|+.-|
T Consensus 89 LEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~el- 167 (305)
T PF14915_consen 89 LETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIEL- 167 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHH-
Confidence 4677888889999999986 55655554444444555666677777776666555555555555555544443322
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 77 ECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAE 156 (1015)
Q Consensus 77 ec~~qlr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgE 156 (1015)
+. ..|++-.++--.|..+. .+....-++.+...++..-.....+.-|.
T Consensus 168 ------h~--------trdaLrEKtL~lE~~Qr------------------dL~Qtq~q~KE~e~m~qne~~kv~k~~~K 215 (305)
T PF14915_consen 168 ------HH--------TRDALREKTLALESVQR------------------DLSQTQCQIKEIEHMYQNEQDKVNKYIGK 215 (305)
T ss_pred ------HH--------HHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 11 11222222222222221 12222222333333444444555666667
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001773 157 IELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSA--------EAANKQHMEGVKKIAKLEAECQRLRG 225 (1015)
Q Consensus 157 i~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsa--------eal~KQ~lEl~KKLaKLEaEcqrLr~ 225 (1015)
.+-+++|+..++.++.-|+.+|....++-.....-.-.++..+ ....++..-+..+-..|-.+|..++-
T Consensus 216 qes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkE 292 (305)
T PF14915_consen 216 QESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKE 292 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 7777788888888888888887777776554444444444333 34444444455555556666655543
No 86
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=95.64 E-value=0.0032 Score=79.88 Aligned_cols=120 Identities=23% Similarity=0.328 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH--
Q 001773 732 LEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELE-- 809 (1015)
Q Consensus 732 ~EeleqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLe-- 809 (1015)
..+...|+.++..++.+|.+....+..+...++.+...++.+..+|..-+.....++..-..+...++++..++..++
T Consensus 657 ~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~ 736 (859)
T PF01576_consen 657 SEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQS 736 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355677888888888888888888888888888888888888888887777777766666666666666666666655
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q 001773 810 ------AEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNE 851 (1015)
Q Consensus 810 ------aEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~~~ 851 (1015)
..+..|..+|..|+.+|+.+...+.++..-+..++.++..+.
T Consensus 737 ~~~~~k~~i~kLE~ri~eLE~~Le~E~r~~~~~~k~~rk~er~~kEl~ 784 (859)
T PF01576_consen 737 ALKGGKKQIAKLEARIRELEEELESEQRRRAEAQKQLRKLERRVKELQ 784 (859)
T ss_dssp ------------------------------------------------
T ss_pred hhcccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 556677888888888888888777776666666665555443
No 87
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.59 E-value=6.3 Score=50.03 Aligned_cols=111 Identities=21% Similarity=0.285 Sum_probs=58.9
Q ss_pred hhhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHH
Q 001773 724 ETTACKFSLEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLET 803 (1015)
Q Consensus 724 ~~~~~~~s~EeleqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLes 803 (1015)
.+...|.-.++.+.|.-.+++-++++.++....++-+..+.++.-++.=.+++|..+.. .....++...+.++....
T Consensus 939 RA~~~K~~~edaegL~~tle~re~eikeLkk~aKmkqeelSe~qvRldmaEkkLss~~k---~~~h~v~~~~ek~ee~~a 1015 (1243)
T KOG0971|consen 939 RAAALKAEIEDAEGLGLTLEDRETEIKELKKSAKMKQEELSEAQVRLDLAEKKLSSAAK---DADHRVEKVQEKLEETQA 1015 (1243)
T ss_pred HHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhh---hHhHHHHHHHHHHHHHHH
Confidence 33334455566666666666666666666655555555555555555555555554444 445566666666666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001773 804 HAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQL 847 (1015)
Q Consensus 804 rL~eLeaEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQL 847 (1015)
.+...++++.+ -++.|..+ +..++..-.+|++++
T Consensus 1016 ~lr~Ke~efee---tmdaLq~d-------i~~lEsek~elKqrl 1049 (1243)
T KOG0971|consen 1016 LLRKKEKEFEE---TMDALQAD-------IDQLESEKAELKQRL 1049 (1243)
T ss_pred HHHHHHHHHHH---HHHHHHHH-------HHHHHhhHHHHHHHh
Confidence 55444444332 33333333 334444444555554
No 88
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.55 E-value=1.3 Score=44.22 Aligned_cols=72 Identities=24% Similarity=0.338 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001773 818 KIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCSSEADENKIKQDRDLAAAAERLAECQETILLLGKQLKSL 895 (1015)
Q Consensus 818 KVesLE~ELe~ek~~~eEleaK~keLEeQLe~~~~~~lk~q~~kdLKikqEkEIaaAeeKLAEcQeTI~sLEKQLKsL 895 (1015)
.+..++.++...+..+.++..........+......|.. -+...+++|..+..++.+....=.-|-.||..+
T Consensus 60 ~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~------qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 60 ELQQLREELQELQQEINELKAEAESAKAELEESEASWEE------QKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333444444444444444444444444444433332221 144456677777777777777777777777654
No 89
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.49 E-value=2.4 Score=45.37 Aligned_cols=124 Identities=23% Similarity=0.309 Sum_probs=71.0
Q ss_pred HHhHHHHHHHHHhhhcchhhHHHHhhhHHHHHHhhhhHHHHHH-----------HHHHHHhHHHHhhhhhhHHHHHhhhh
Q 001773 4 QIKELNEKLSAANSEISAKEDLVKQHTKVAEEAVSGWEKAEAE-----------ALALKNHLESVTLSKLTAEDRAAHLD 72 (1015)
Q Consensus 4 ~~~~l~ekl~~a~~~~~~kd~lvkqh~kvaeeav~gwekae~e-----------~~~lK~~Le~~~~q~~~le~rv~hLd 72 (1015)
.|..|..+|....-|- .++|+-.+--+-|+..+|-.+++ +-.|+.+|-.+..+..+++.++-+.|
T Consensus 20 ~l~elq~~l~~l~~EN----k~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~ 95 (194)
T PF15619_consen 20 ELAELQRKLQELRKEN----KTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKD 95 (194)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443333 45566666677788888888754 44555555555555555555555555
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 73 GALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNM 142 (1015)
Q Consensus 73 ~aLKec~~qlr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLeelqee 142 (1015)
+-|-..-.++. +++..+..+ -.. -+.++..++..++..++.....+..|.+.++.....
T Consensus 96 ~el~k~~~~l~--------~L~~L~~dk--nL~-eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~ 154 (194)
T PF15619_consen 96 EELLKTKDELK--------HLKKLSEDK--NLA-EREELQRKLSQLEQKLQEKEKKIQELEKQLELENKS 154 (194)
T ss_pred HHHHHHHHHHH--------HHHHHHHcC--Cch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 44443333333 333332222 222 256778888888888887777777777776655443
No 90
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.49 E-value=0.72 Score=52.68 Aligned_cols=30 Identities=20% Similarity=0.374 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHhccCCC
Q 001773 870 DLAAAAERLAECQ----ETILLLGKQLKSLRPQS 899 (1015)
Q Consensus 870 EIaaAeeKLAEcQ----eTI~sLEKQLKsLa~~~ 899 (1015)
+|+.+...+.+|+ ..|..|...+..|...+
T Consensus 259 eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~ 292 (325)
T PF08317_consen 259 EIAEAEKIREECRGWTRSEVKRLKAKVDALEKLT 292 (325)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 4444444444444 24555555555555433
No 91
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.47 E-value=2.8 Score=45.35 Aligned_cols=112 Identities=16% Similarity=0.116 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhccc--chhhhh-
Q 001773 787 AETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCS--SEADEN- 863 (1015)
Q Consensus 787 lE~qLk~~~e~~edLesrL~eLeaEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~~~~~~lk~--q~~kdL- 863 (1015)
+..+-.....-+..++.-|..+-.++..+...++.+..-=+.++.++.++..++...++++..+....... ..+..+
T Consensus 74 ~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~ 153 (207)
T PF05010_consen 74 LLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIA 153 (207)
T ss_pred HHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555555666666666677777777778888888888888888888776521111 222222
Q ss_pred --hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 001773 864 --KIKQDRDLAAAAERLAECQETILLLGKQLKSLRPQ 898 (1015)
Q Consensus 864 --KikqEkEIaaAeeKLAEcQeTI~sLEKQLKsLa~~ 898 (1015)
+.....++.++.-.+-.-+..+.+|+.+|......
T Consensus 154 ~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kE 190 (207)
T PF05010_consen 154 QVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKE 190 (207)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566788888888888889999999988876554
No 92
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.38 E-value=4.8 Score=43.22 Aligned_cols=177 Identities=21% Similarity=0.281 Sum_probs=93.6
Q ss_pred HHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 49 ALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAE 128 (1015)
Q Consensus 49 ~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qlr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaE 128 (1015)
.+|.=-.+.|.-++++ =..||+-|.+++.--+..+..+.++. ...+..-.--..++..+.++..++..+...
T Consensus 13 ~iK~YYndIT~~NL~l-------IksLKeei~emkk~e~~~~k~m~ei~-~eN~~L~epL~~a~~e~~eL~k~L~~y~kd 84 (201)
T PF13851_consen 13 EIKNYYNDITLNNLEL-------IKSLKEEIAEMKKKEERNEKLMAEIS-QENKRLSEPLKKAEEEVEELRKQLKNYEKD 84 (201)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777654 34678888888776666666666662 222222222222233333333333332221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001773 129 NATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHME 208 (1015)
Q Consensus 129 l~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lE 208 (1015)
...+......+..+..++..++-+..++.+|+..++++...|...+...-.++.....-+..+ +.+.+..
T Consensus 85 ----K~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~l------LEkKl~~ 154 (201)
T PF13851_consen 85 ----KQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLL------LEKKLQA 154 (201)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
Confidence 222333444445555555666666666666666666666666655555544444444433333 2223333
Q ss_pred HHHHHHHHHHHHHHHhhhhhccCCChHHHHHhHHHHhh
Q 001773 209 GVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKMEVES 246 (1015)
Q Consensus 209 l~KKLaKLEaEcqrLr~l~rk~lpgpaa~a~mk~ev~~ 246 (1015)
+...+.+-+ ..+..++...-|.|+|+..+..-|+.
T Consensus 155 l~~~lE~ke---aqL~evl~~~nldp~~~~~v~~~l~~ 189 (201)
T PF13851_consen 155 LSEQLEKKE---AQLNEVLAAANLDPAALSQVSKKLED 189 (201)
T ss_pred HHHHHHHHH---HHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 333333333 34455666677899999988887775
No 93
>PRK10869 recombination and repair protein; Provisional
Probab=95.37 E-value=6.4 Score=48.36 Aligned_cols=119 Identities=18% Similarity=0.120 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHHHHH----hHHHHhhhcCCcCCc
Q 001773 179 HIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQ----MKMEVESLGRDYGDS 254 (1015)
Q Consensus 179 ~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa~a~----mk~ev~~~~~~~~~~ 254 (1015)
..+...++.....++.....+...-..+.-.-..+..+++.+..+..|.||-=|.+..|-. ++.|++.+.
T Consensus 264 ~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~------ 337 (553)
T PRK10869 264 SGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLD------ 337 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh------
Confidence 3334444444444444433333333333334556889999999999999999988887744 444444322
Q ss_pred cccCCCCCCCCCCCCCCcccchhhhHhhhhhhHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHH
Q 001773 255 RLKRSPVKPTSPHLSPVSEFSLDNVQKFQKENEFLTERLLAMEEETKMLKEALAKRNSELQASRNLCAKTASKLQSLEAQ 334 (1015)
Q Consensus 255 r~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~eee~k~lke~l~~~~~elq~sr~~~a~t~~kl~~~e~q 334 (1015)
-.-+++..++.+-+.++..|.+...+|-..|...|+...+ .|..+
T Consensus 338 ---------------------------------~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~--~v~~~ 382 (553)
T PRK10869 338 ---------------------------------DQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQ--LITES 382 (553)
T ss_pred ---------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 1245677888888899999999999999999999987764 57777
Q ss_pred Hhhh
Q 001773 335 MQTS 338 (1015)
Q Consensus 335 ~~~~ 338 (1015)
|..+
T Consensus 383 L~~L 386 (553)
T PRK10869 383 MHEL 386 (553)
T ss_pred HHHc
Confidence 7766
No 94
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.35 E-value=2.3 Score=49.07 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001773 869 RDLAAAAERLAECQETILLLGKQLKS 894 (1015)
Q Consensus 869 kEIaaAeeKLAEcQeTI~sLEKQLKs 894 (1015)
.++..+...+...+..+..+..+|..
T Consensus 246 ~~l~~~~~~l~~~~~~l~~~~~~l~~ 271 (423)
T TIGR01843 246 EELTEAQARLAELRERLNKARDRLQR 271 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35566666666666666666666654
No 95
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.34 E-value=1.8 Score=46.34 Aligned_cols=32 Identities=19% Similarity=0.159 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 734 EFEELKLEKDNLATDLARCTENLEMTKSQLYE 765 (1015)
Q Consensus 734 eleqLEsEkeelE~eLee~~eklEel~~qLqe 765 (1015)
.+..++.++.++...++.+......+..--..
T Consensus 13 ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~R 44 (194)
T PF15619_consen 13 KIKELQNELAELQRKLQELRKENKTLKQLQKR 44 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666665555544443333
No 96
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.33 E-value=3.4 Score=47.37 Aligned_cols=30 Identities=37% Similarity=0.606 Sum_probs=25.2
Q ss_pred hhhhhhHHHHHHHHhHHHHHHHHHHHHHhh
Q 001773 281 KFQKENEFLTERLLAMEEETKMLKEALAKR 310 (1015)
Q Consensus 281 ~~~~~~~~l~~rl~~~eee~k~lke~l~~~ 310 (1015)
...-||.||-+||...++|...+|..++|=
T Consensus 193 aLi~ENRyL~erl~q~qeE~~l~k~~i~KY 222 (319)
T PF09789_consen 193 ALIMENRYLKERLKQLQEEKELLKQTINKY 222 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456689999999999999999888877653
No 97
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.19 E-value=4.2 Score=45.47 Aligned_cols=153 Identities=18% Similarity=0.221 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH----
Q 001773 734 EFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELE---- 809 (1015)
Q Consensus 734 eleqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLe---- 809 (1015)
++..++.++.+++++++.+..+++.+...+.++..++.+++.++..++..+..+++.|..-.+.++. |+-.+.
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~---raRAmq~nG~ 115 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKK---RARAMQVNGT 115 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHcCC
Confidence 4667777777777777777777777777777777777777777777777666666666654443322 222211
Q ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhh-cccchhhhh---hhhh
Q 001773 810 ------------------AEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCA-VCSSEADEN---KIKQ 867 (1015)
Q Consensus 810 ------------------aEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~~~~~~-lk~q~~kdL---Kikq 867 (1015)
.++.-+...|+.-..-|+..+.....++.+-..++.+++.+.... .....-..| +-.+
T Consensus 116 ~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~ 195 (265)
T COG3883 116 ATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEK 195 (265)
T ss_pred hhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444445555555555556655544300 000000011 2334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001773 868 DRDLAAAAERLAECQETILLLG 889 (1015)
Q Consensus 868 EkEIaaAeeKLAEcQeTI~sLE 889 (1015)
..-+..+..+.++.......|.
T Consensus 196 ~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 196 NALIAALAAKEASALGEKAALE 217 (265)
T ss_pred HHHHHHHHHHHHHhHHHHHHHH
Confidence 4455666666666666666666
No 98
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=95.16 E-value=1.2 Score=46.57 Aligned_cols=105 Identities=25% Similarity=0.349 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 741 EKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIE 820 (1015)
Q Consensus 741 EkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLeaEl~eLqeKVe 820 (1015)
++.+.+..+.....++......+.++...+..++.............+..+..+...++.+...+..+..++.+.+..+.
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~ 161 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQ 161 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444344333444444333444333333333333333333443333333333333333333333444444
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Q 001773 821 SLENELQDEKMSHHNAMAKCKELEE 845 (1015)
Q Consensus 821 sLE~ELe~ek~~~eEleaK~keLEe 845 (1015)
.+..++...+.....+...+.+++.
T Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (191)
T PF04156_consen 162 ELRSQLERLQENLQQLEEKIQELQE 186 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444333
No 99
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.06 E-value=3.2 Score=50.36 Aligned_cols=159 Identities=17% Similarity=0.254 Sum_probs=93.0
Q ss_pred hhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhHHHHHH-----HH---
Q 001773 725 TTACKFSLEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQL----LAEVKAQLASAQKSNSLAETQ-----LK--- 792 (1015)
Q Consensus 725 ~~~~~~s~EeleqLEsEkeelE~eLee~~eklEel~~qLqelE~~----LeELesQLesLqeS~selE~q-----Lk--- 792 (1015)
-+++.++.++|++|..|...+...+..++.++..+...+-+++-+ ..++++.+..+......+.-. ..
T Consensus 324 Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~ 403 (581)
T KOG0995|consen 324 IELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLER 403 (581)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 356778999999999999999999999999888888777665543 334444444444332222111 11
Q ss_pred -----------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhcccchhh
Q 001773 793 -----------CMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCSSEAD 861 (1015)
Q Consensus 793 -----------~~~e~~edLesrL~eLeaEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~~~~~~lk~q~~k 861 (1015)
-...-+--+..-+.+..-++++..++...|+.-+..+...+.+.......++.++..++.
T Consensus 404 ~pe~~~~~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~--------- 474 (581)
T KOG0995|consen 404 NPERAATNGVDLKSYVKPLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAES--------- 474 (581)
T ss_pred CCccCccccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 111112223333334445666666666666666666666666666666666666665543
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001773 862 ENKIKQDRDLAAAAERLAECQETILLLGKQLKSLR 896 (1015)
Q Consensus 862 dLKikqEkEIaaAeeKLAEcQeTI~sLEKQLKsLa 896 (1015)
+-.+ -...++.....|+..|..|+++|..+.
T Consensus 475 --~~~~--~k~e~eee~~k~~~E~e~le~~l~~l~ 505 (581)
T KOG0995|consen 475 --KYEL--KKEEAEEEWKKCRKEIEKLEEELLNLK 505 (581)
T ss_pred --HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011 223345555666666666666666554
No 100
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.06 E-value=8.3 Score=44.05 Aligned_cols=64 Identities=23% Similarity=0.277 Sum_probs=33.0
Q ss_pred HHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHH
Q 001773 44 EAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEF 111 (1015)
Q Consensus 44 e~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qlr~~reeqeqki~~~~~~~~~e~e~~~~EL 111 (1015)
+.+-..||..|+........|++-+. +|++.--.+..-=|..|..|.-.++++-....+-+..|
T Consensus 33 ~qen~~Lk~El~~ek~~~~~L~~e~~----~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L 96 (310)
T PF09755_consen 33 QQENRVLKRELETEKARCKHLQEENR----ALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETL 96 (310)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555544444444332 34444455555555556677777777655544444333
No 101
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.96 E-value=0.18 Score=53.33 Aligned_cols=99 Identities=30% Similarity=0.372 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001773 731 SLEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEA 810 (1015)
Q Consensus 731 s~EeleqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLea 810 (1015)
..+|+..+......+...|...+.++..+...+......|..|+.++..++..+..++.+++.....+..+.+.+..+++
T Consensus 79 l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l 158 (194)
T PF08614_consen 79 LQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQL 158 (194)
T ss_dssp -----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777777777778888888888888888888888888888887778888888877777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001773 811 EVNLLRAKIESLENELQDE 829 (1015)
Q Consensus 811 El~eLqeKVesLE~ELe~e 829 (1015)
++..+..++..|+.|-..+
T Consensus 159 ~~~~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 159 QLNMLEEKLRKLEEENREL 177 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776643
No 102
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.95 E-value=14 Score=46.26 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHhHHHHhhhhhhHHH
Q 001773 40 WEKAEAEALALKNHLESVTLSKLTAED 66 (1015)
Q Consensus 40 wekae~e~~~lK~~Le~~~~q~~~le~ 66 (1015)
++.++.+...++.+++.+..+...+++
T Consensus 225 ~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 225 YEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555444444444444
No 103
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=94.90 E-value=20 Score=48.68 Aligned_cols=91 Identities=12% Similarity=0.093 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001773 120 QELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSA 199 (1015)
Q Consensus 120 keLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsa 199 (1015)
..+.....++..+...++..+..+..+..++..+..++..+.+.+... ...+..+|..+..+++.+..++....+..
T Consensus 875 ~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~---~eel~a~L~e~r~rL~~l~~el~~~~~~~ 951 (1353)
T TIGR02680 875 TRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAM---VDEIRARLAETRAALASGGRELPRLAEAL 951 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555555555555555555555555555444443322 33344444444444444444444444444
Q ss_pred HHHHHHHHHHHHHH
Q 001773 200 EAANKQHMEGVKKI 213 (1015)
Q Consensus 200 eal~KQ~lEl~KKL 213 (1015)
..+...+.....++
T Consensus 952 ~~a~~~~~~a~~~~ 965 (1353)
T TIGR02680 952 ATAEEARGRAEEKR 965 (1353)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444444
No 104
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=94.88 E-value=5.6 Score=44.09 Aligned_cols=215 Identities=18% Similarity=0.171 Sum_probs=137.9
Q ss_pred hcchhhHHHHhhhHHHHHH-hhhhHHH------------HHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHh
Q 001773 18 EISAKEDLVKQHTKVAEEA-VSGWEKA------------EAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRN 84 (1015)
Q Consensus 18 ~~~~kd~lvkqh~kvaeea-v~gweka------------e~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qlr~ 84 (1015)
-..+++.|.++..--..|| |..-|-- .-+-..||+|++++...-..|=-|++.=+--+-+|.-|++-
T Consensus 75 ~~~a~~elq~~ks~~Q~e~~v~a~e~~~~rll~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~ 154 (330)
T KOG2991|consen 75 KVMARDELQLRKSWKQYEAYVQALEGKYTRLLSDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQY 154 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788877644333333 3221111 13345788899998888888888888888889999999988
Q ss_pred hhHHHHHH---HHHHH--HHHhhhHHHHHHHHHHHHHHH---HHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Q 001773 85 LKEEHEQK---LQDFV--LTKTKQWDKIRLEFEAKIANF---EQELLRS--------AAENATLSRSLQERSNMLIKISE 148 (1015)
Q Consensus 85 ~reeqeqk---i~~~~--~~~~~e~e~~~~ELEaKLaEl---EkeLeel--------kaEl~aLeeqLeelqeeI~EL~e 148 (1015)
++-.|.-- ++.++ -...-.|.+++.+++.....+ +.+|... ...+-+-.+-|..-+++|..
T Consensus 155 lK~qq~Ps~~qlR~~llDPAinl~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~--- 231 (330)
T KOG2991|consen 155 LKQQQQPSVAQLRSTLLDPAINLFFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGH--- 231 (330)
T ss_pred HHHhhCcHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHh---
Confidence 88766511 11110 122345666666666543333 2222221 11122222222222222221
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001773 149 EKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVR 228 (1015)
Q Consensus 149 eiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~r 228 (1015)
.-.+|+|.-|.-.+.-.....+.|+.....+-.-++.+.+..+..+..+=.++.++.+-.+.|..++..+..+.-+|-
T Consensus 232 --q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~ 309 (330)
T KOG2991|consen 232 --QASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVG 309 (330)
T ss_pred --hhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 224566777777777777777888888888888888899999999999999999999999999999999999888886
Q ss_pred ccCCChHHH
Q 001773 229 KKLPGPAAL 237 (1015)
Q Consensus 229 k~lpgpaa~ 237 (1015)
-+---|+|+
T Consensus 310 d~~~~~~a~ 318 (330)
T KOG2991|consen 310 DKKDEVDAI 318 (330)
T ss_pred ccccccccc
Confidence 665545543
No 105
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=94.87 E-value=1.7 Score=45.44 Aligned_cols=108 Identities=19% Similarity=0.254 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 111 FEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNE 190 (1015)
Q Consensus 111 LEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~E 190 (1015)
....+.+.+..+..+..++..++..+......+..+........+......+++..+......+..++..+.+++.....
T Consensus 79 ~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~ 158 (191)
T PF04156_consen 79 LQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSRE 158 (191)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555555555555555555666666666666666666666666666644444444
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 191 EKNMSMRSAEAANKQHMEGVKKIAKLEA 218 (1015)
Q Consensus 191 Ele~s~qsaeal~KQ~lEl~KKLaKLEa 218 (1015)
...............+......++.++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (191)
T PF04156_consen 159 EVQELRSQLERLQENLQQLEEKIQELQE 186 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444443
No 106
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=94.87 E-value=0.0085 Score=76.13 Aligned_cols=109 Identities=17% Similarity=0.213 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001773 734 EFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVN 813 (1015)
Q Consensus 734 eleqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLeaEl~ 813 (1015)
.|.++++.+.+++..|..-......+...++.++..+.++..++..-......+...+..+..+++.+.-++.+.+.+..
T Consensus 744 ~i~kLE~ri~eLE~~Le~E~r~~~~~~k~~rk~er~~kEl~~q~ee~~k~~~~~~d~~~kl~~k~k~~krq~eeaEe~~~ 823 (859)
T PF01576_consen 744 QIAKLEARIRELEEELESEQRRRAEAQKQLRKLERRVKELQFQVEEERKNAERLQDLVDKLQLKLKQLKRQLEEAEEEAS 823 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 34567777777777777777777777777777777777777777776665555555555555555554445444444444
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001773 814 LLRAKIESLENELQDEKMSHHNAMAKCKE 842 (1015)
Q Consensus 814 eLqeKVesLE~ELe~ek~~~eEleaK~ke 842 (1015)
+...+...+..+|+........+...+..
T Consensus 824 ~~~~k~Rk~q~elee~~e~~~~~e~~l~~ 852 (859)
T PF01576_consen 824 RNLAKYRKLQRELEEAEERAEAAERELNK 852 (859)
T ss_dssp -------SSSSHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444333333333
No 107
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=94.79 E-value=7.7 Score=47.58 Aligned_cols=124 Identities=18% Similarity=0.177 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHHHHHhHHHHhhhcCCcCCcccc
Q 001773 178 LHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKMEVESLGRDYGDSRLK 257 (1015)
Q Consensus 178 L~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa~a~mk~ev~~~~~~~~~~r~r 257 (1015)
+..+.+.++....+++.....+...-..+.-.-..+..+++.+..+..+.||.-|.+..+-.-+.+++.-=
T Consensus 268 ~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL--------- 338 (563)
T TIGR00634 268 LRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEEL--------- 338 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH---------
Confidence 33344444444444444444444433444444566788999999999999999988888755444433200
Q ss_pred CCCCCCCCCCCCCCcccchhhhHhhhhhhHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHhh
Q 001773 258 RSPVKPTSPHLSPVSEFSLDNVQKFQKENEFLTERLLAMEEETKMLKEALAKRNSELQASRNLCAKTASKLQSLEAQMQT 337 (1015)
Q Consensus 258 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~eee~k~lke~l~~~~~elq~sr~~~a~t~~kl~~~e~q~~~ 337 (1015)
..+......+..++.+...+++-+.+...+|-..|...|+...+ .+..+|..
T Consensus 339 --------------------------~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~~--~v~~~l~~ 390 (563)
T TIGR00634 339 --------------------------DQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKAAERLAK--RVEQELKA 390 (563)
T ss_pred --------------------------HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh
Confidence 01112234566777888888888888888888888888876653 35555554
Q ss_pred h
Q 001773 338 S 338 (1015)
Q Consensus 338 ~ 338 (1015)
+
T Consensus 391 L 391 (563)
T TIGR00634 391 L 391 (563)
T ss_pred C
Confidence 4
No 108
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.75 E-value=3.3 Score=42.32 Aligned_cols=107 Identities=17% Similarity=0.211 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001773 737 ELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLR 816 (1015)
Q Consensus 737 qLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLeaEl~eLq 816 (1015)
.+..++...+..-..+.+.+..+...|...+.....+..+....+..+..+++++..+ ...++.++.++..+.
T Consensus 7 ~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~l-------t~el~~L~~EL~~l~ 79 (140)
T PF10473_consen 7 HVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEEL-------TSELNQLELELDTLR 79 (140)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555566666655444444444443 344444555555555
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Q 001773 817 AKIESLENELQDEKMSHHNAMAKCKELEEQLQRN 850 (1015)
Q Consensus 817 eKVesLE~ELe~ek~~~eEleaK~keLEeQLe~~ 850 (1015)
.....|.++++..+..+.+++..+..+..-|...
T Consensus 80 sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~ 113 (140)
T PF10473_consen 80 SEKENLDKELQKKQEKVSELESLNSSLENLLQEK 113 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 5555666666666666666666555555555533
No 109
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=94.65 E-value=6.2 Score=42.58 Aligned_cols=69 Identities=19% Similarity=0.299 Sum_probs=44.5
Q ss_pred HHHHhhhHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHH
Q 001773 24 DLVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQD 95 (1015)
Q Consensus 24 ~lvkqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qlr~~reeqeqki~~ 95 (1015)
.|+||+-|=++--|+- =..|+++||.+|-++..+....+.++..|.+++..+-.+|.....|-.++..+
T Consensus 13 sLLKqQLke~q~E~~~---K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~E 81 (202)
T PF06818_consen 13 SLLKQQLKESQAEVNQ---KDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNE 81 (202)
T ss_pred HHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCH
Confidence 4566666555443321 12788888888888888888888888888887777666666555554433333
No 110
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=94.63 E-value=20 Score=46.38 Aligned_cols=41 Identities=15% Similarity=0.095 Sum_probs=27.3
Q ss_pred HHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHH
Q 001773 47 ALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEE 88 (1015)
Q Consensus 47 ~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qlr~~ree 88 (1015)
|.+=++.|...+-|.++++-....|+ .+++|-..=-.+.+.
T Consensus 57 vqcp~kelfi~riq~ldlete~a~~~-~iaevtd~~~~vlel 97 (1195)
T KOG4643|consen 57 VQCPTKELFIQRIQILDLETEMAQMR-TIAEVTDEECQVLEL 97 (1195)
T ss_pred hcCCcHHHHHHHHHhhhhHHHHHHHH-HHHHhhhhHHhhhhh
Confidence 33445667777888888887777777 777776555555443
No 111
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.62 E-value=4.2 Score=51.39 Aligned_cols=117 Identities=16% Similarity=0.162 Sum_probs=70.4
Q ss_pred CHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001773 731 SLEEFEELKLE-KDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELE 809 (1015)
Q Consensus 731 s~EeleqLEsE-keelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLe 809 (1015)
+.+.++.+..+ +........+++..+..++.+.+..-..|.+++.++..++..-..+.+.++...+..+.+..|+..+-
T Consensus 541 L~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl 620 (717)
T PF10168_consen 541 LSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVL 620 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556555 45555556666666666666666666666677777666666555555566666666666666665543
Q ss_pred ------------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001773 810 ------------AEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQ 848 (1015)
Q Consensus 810 ------------aEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe 848 (1015)
+| +...+.+..+..++...+..++.+..++...+.++.
T Consensus 621 ~~l~~~~P~LS~AE-r~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~ 670 (717)
T PF10168_consen 621 QLLNSQLPVLSEAE-REFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIE 670 (717)
T ss_pred HHHhccCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22 344555566666666666666666666666555555
No 112
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=94.61 E-value=3.2 Score=50.65 Aligned_cols=88 Identities=22% Similarity=0.219 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001773 739 KLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAK 818 (1015)
Q Consensus 739 EsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLeaEl~eLqeK 818 (1015)
+..+..+++..+.+.-++..+..+..+...+|.+|+.-|..-+..+-..|+.+...--....|+++--.+-+++-+|.-+
T Consensus 110 QerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLk 189 (861)
T KOG1899|consen 110 QERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLK 189 (861)
T ss_pred HHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHH
Confidence 33344444444444444444444444444444444444444444444444455554445566666666666777777666
Q ss_pred HHHHHHHH
Q 001773 819 IESLENEL 826 (1015)
Q Consensus 819 VesLE~EL 826 (1015)
..++++|.
T Consensus 190 ltalEkeq 197 (861)
T KOG1899|consen 190 LTALEKEQ 197 (861)
T ss_pred HHHHHHHh
Confidence 66666544
No 113
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=94.56 E-value=17 Score=45.34 Aligned_cols=85 Identities=22% Similarity=0.270 Sum_probs=48.5
Q ss_pred HHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHH-------------------HHHHHHHhhhHHHHHHHHHHHHHHhhhH
Q 001773 44 EAEALALKNHLESVTLSKLTAEDRAAHLDGALK-------------------ECMRQIRNLKEEHEQKLQDFVLTKTKQW 104 (1015)
Q Consensus 44 e~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLK-------------------ec~~qlr~~reeqeqki~~~~~~~~~e~ 104 (1015)
-.++..|+...+....++..|+..++.|-..+. .-++.|+.=.+.-+.++.. .......+
T Consensus 35 seev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqa-qv~~ne~L 113 (617)
T PF15070_consen 35 SEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQA-QVENNEQL 113 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 367777777777777777777777777654443 2222333323332333332 23445566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 105 DKIRLEFEAKIANFEQELLRSAAEN 129 (1015)
Q Consensus 105 e~~~~ELEaKLaElEkeLeelkaEl 129 (1015)
..+..+.+.+|.+++..+..+....
T Consensus 114 s~L~~EqEerL~ELE~~le~~~e~~ 138 (617)
T PF15070_consen 114 SRLNQEQEERLAELEEELERLQEQQ 138 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666555443
No 114
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.41 E-value=2.2 Score=48.81 Aligned_cols=34 Identities=29% Similarity=0.495 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHH----HHHHHHHHHHHhccCCCc
Q 001773 867 QDRDLAAAAERLAECQ----ETILLLGKQLKSLRPQSE 900 (1015)
Q Consensus 867 qEkEIaaAeeKLAEcQ----eTI~sLEKQLKsLa~~~e 900 (1015)
...+|+.|+..+.+|+ ..|..|...+..|...+.
T Consensus 251 ~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l~g 288 (312)
T smart00787 251 LNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSLTG 288 (312)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 3446666666666664 466667767666666544
No 115
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=94.41 E-value=12 Score=42.86 Aligned_cols=200 Identities=23% Similarity=0.225 Sum_probs=103.9
Q ss_pred HhHHHHHHHHHhhhcchhhHHHHhhhHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHH--HHHHHH
Q 001773 5 IKELNEKLSAANSEISAKEDLVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALK--ECMRQI 82 (1015)
Q Consensus 5 ~~~l~ekl~~a~~~~~~kd~lvkqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLK--ec~~ql 82 (1015)
=+.+++|+..+|.+|.++=+ +| -.--.|.-.|-..|+..|.....|- +-|=.|++..+| +...||
T Consensus 105 R~el~~kFq~~L~dIq~~~e---e~-------~~~~~k~~~eN~~L~eKlK~l~eQy---e~rE~~~~~~~k~keLE~Ql 171 (309)
T PF09728_consen 105 RKELSEKFQATLKDIQAQME---EQ-------SERNIKLREENEELREKLKSLIEQY---ELREEHFEKLLKQKELEVQL 171 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHH---hc-------cchhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHH
Confidence 35678888888888865321 11 1222233345556677777777663 455556666664 445566
Q ss_pred HhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001773 83 RNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKG 162 (1015)
Q Consensus 83 r~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkE 162 (1015)
..+|=++..........+...... --|.++. ++..+...-..|..+|....+.+.+....+.+...-+.-.+.
T Consensus 172 ~~AKl~q~~~~~~~e~~k~~~~~~------~~l~~~~-~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~ 244 (309)
T PF09728_consen 172 AEAKLEQQQEEAEQEKEKAKQEKE------ILLEEAA-QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKK 244 (309)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 666666655444443322222222 1111111 333333333334444444444444444444444444444444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001773 163 NIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLR 224 (1015)
Q Consensus 163 RIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr 224 (1015)
.++...+.+..|+.+-..+....+.-+..+-..........+++....+++.+|+.-|+.++
T Consensus 245 Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ 306 (309)
T PF09728_consen 245 EMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQ 306 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444445555555555555555545544444444445566677777778888888887765
No 116
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.40 E-value=4.2 Score=40.67 Aligned_cols=31 Identities=19% Similarity=0.226 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 736 EELKLEKDNLATDLARCTENLEMTKSQLYET 766 (1015)
Q Consensus 736 eqLEsEkeelE~eLee~~eklEel~~qLqel 766 (1015)
..++.++..+......+..++..+...+...
T Consensus 6 ~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q 36 (132)
T PF07926_consen 6 SSLQSELQRLKEQEEDAEEQLQSLREDLESQ 36 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333333333
No 117
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.39 E-value=0.31 Score=51.56 Aligned_cols=107 Identities=24% Similarity=0.285 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001773 117 NFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSM 196 (1015)
Q Consensus 117 ElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~ 196 (1015)
.++..+..++.++..+.+.-..+...+..++..+..++..+.....+|..+..++..|+.++..+..++.....-.+.+.
T Consensus 71 ~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~ 150 (194)
T PF08614_consen 71 SLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQ 150 (194)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444454555555555555555555555555666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 197 RSAEAANKQHMEGVKKIAKLEAECQRL 223 (1015)
Q Consensus 197 qsaeal~KQ~lEl~KKLaKLEaEcqrL 223 (1015)
..+.+++-+...+.+++.+++.+-..|
T Consensus 151 DE~~~L~l~~~~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 151 DELQALQLQLNMLEEKLRKLEEENREL 177 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666667777777777777665444
No 118
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.36 E-value=8.2 Score=45.55 Aligned_cols=104 Identities=15% Similarity=0.071 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 144 IKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRL 223 (1015)
Q Consensus 144 ~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrL 223 (1015)
.++...+.++.+...-+.+..+.....++.+..++...++........+...++...+.+.-+.++.+.+..+....-.+
T Consensus 314 telRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkelehlr~~kl~~ 393 (502)
T KOG0982|consen 314 TELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKELEHLRRRKLVL 393 (502)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444455555555666666666666666555555555444444555555555555544443333222
Q ss_pred hhhhhccCCChHHHHHhHHHHhhhcC
Q 001773 224 RGLVRKKLPGPAALAQMKMEVESLGR 249 (1015)
Q Consensus 224 r~l~rk~lpgpaa~a~mk~ev~~~~~ 249 (1015)
..-+| -|..|-+.-.-.||..|-.
T Consensus 394 a~p~r--grsSaRe~eleqevkrLrq 417 (502)
T KOG0982|consen 394 ANPVR--GRSSAREIELEQEVKRLRQ 417 (502)
T ss_pred hcccc--CchhHHHHHHHHHHHHhcc
Confidence 22222 2223334445566665543
No 119
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=94.27 E-value=8.9 Score=47.05 Aligned_cols=100 Identities=22% Similarity=0.280 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHhHHHHHHH
Q 001773 732 LEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKS-------NSLAETQLKCMAESYRSLETH 804 (1015)
Q Consensus 732 ~EeleqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS-------~selE~qLk~~~e~~edLesr 804 (1015)
.|.+..|+-.++.+.-...-+.++++.-...|++++.-|++-..+|-..++- ...+|+|.-.+.....+|+-+
T Consensus 110 QerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLk 189 (861)
T KOG1899|consen 110 QERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLK 189 (861)
T ss_pred HHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHH
Confidence 3567788888888888888888888888888888887777766666555443 345777777777778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001773 805 AQELEAEVNLLRAKIESLENELQDEKM 831 (1015)
Q Consensus 805 L~eLeaEl~eLqeKVesLE~ELe~ek~ 831 (1015)
+..++.+-.+.+.|+..-+..++.+++
T Consensus 190 ltalEkeq~e~E~K~R~se~l~qevn~ 216 (861)
T KOG1899|consen 190 LTALEKEQNETEKKLRLSENLMQEVNQ 216 (861)
T ss_pred HHHHHHHhhhHHHHHHhHHHHHHHHHH
Confidence 888888888888887777777777663
No 120
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=94.25 E-value=4.7 Score=45.08 Aligned_cols=35 Identities=26% Similarity=0.217 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 113 AKIANFEQELLRSAAENATLSRSLQERSNMLIKIS 147 (1015)
Q Consensus 113 aKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~ 147 (1015)
.+|.+++.++++++.+...-.-+|+.+...+..-.
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQK 52 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQK 52 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34555555555555555554444444444443333
No 121
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=94.16 E-value=14 Score=42.67 Aligned_cols=6 Identities=17% Similarity=-0.113 Sum_probs=2.3
Q ss_pred hhHhhh
Q 001773 385 WATALI 390 (1015)
Q Consensus 385 wasali 390 (1015)
|+.+-|
T Consensus 311 ~v~~~v 316 (423)
T TIGR01843 311 EIEAKL 316 (423)
T ss_pred EEEEEE
Confidence 333333
No 122
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.15 E-value=2.1 Score=53.57 Aligned_cols=55 Identities=13% Similarity=0.050 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001773 738 LKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLK 792 (1015)
Q Consensus 738 LEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk 792 (1015)
++..+..+...++.+.+...+++.+.++++.++....++...+.+.+..++.++.
T Consensus 662 yK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 662 YKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555555555555555555555555555555555555555555555555555
No 123
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.13 E-value=14 Score=42.49 Aligned_cols=194 Identities=17% Similarity=0.176 Sum_probs=122.2
Q ss_pred HHHHhHHHHhhhhhhHHHHHhh-----------hhHHHHHHH-HHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHH-HHHH
Q 001773 49 ALKNHLESVTLSKLTAEDRAAH-----------LDGALKECM-RQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEF-EAKI 115 (1015)
Q Consensus 49 ~lK~~Le~~~~q~~~le~rv~h-----------Ld~aLKec~-~qlr~~reeqeqki~~~~~~~~~e~e~~~~EL-EaKL 115 (1015)
.|++.+.+...-...+|..+.- .+...|--| .|++.+|.=-+ ...++.|=.=|..+ +.=+
T Consensus 74 EL~~~I~egr~~~~~~E~et~~~nPpLF~EY~~a~~d~r~lm~~Qf~lvK~~aR-------l~ak~~WYeWR~kllegLk 146 (312)
T smart00787 74 ELKKYISEGRDLFKEIEEETLINNPPLFKEYFSASPDVKLLMDKQFQLVKTFAR-------LEAKKMWYEWRMKLLEGLK 146 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 4566666666666665555441 233333333 24444444222 33445554444444 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 001773 116 ANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCER----EINSAKYELHIVSKELEIRNEE 191 (1015)
Q Consensus 116 aElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEK----E~e~LK~EL~~LqeELEil~EE 191 (1015)
..+...++.++.+...|...++.++..+-.+......+..++..+++....++. +...++.+|..+..++.....+
T Consensus 147 ~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~ 226 (312)
T smart00787 147 EGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKK 226 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777777777878888888888888888888877777766544 6677777777777777777777
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-cCCChHHHHHhHHHHhhhcC
Q 001773 192 KNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRK-KLPGPAALAQMKMEVESLGR 249 (1015)
Q Consensus 192 le~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk-~lpgpaa~a~mk~ev~~~~~ 249 (1015)
++..+..+..+...+.+...+..++..+++.+...+.. +-=.+.=+.+.|..|..|-.
T Consensus 227 l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 227 LEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQS 285 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777666665422 22224556778888877654
No 124
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.09 E-value=5.9 Score=42.56 Aligned_cols=48 Identities=21% Similarity=0.271 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 733 EEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASA 780 (1015)
Q Consensus 733 EeleqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesL 780 (1015)
+++..|+..-...+..+.++..+...+..-|..++..+.+|+.++...
T Consensus 34 eei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y 81 (201)
T PF13851_consen 34 EEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNY 81 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444433
No 125
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=93.96 E-value=7.1 Score=42.66 Aligned_cols=191 Identities=13% Similarity=0.123 Sum_probs=91.0
Q ss_pred HHHhhhHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHH---HHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 001773 25 LVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGA---LKECMRQIRNLKEEHEQKLQDFVLTKT 101 (1015)
Q Consensus 25 lvkqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~a---LKec~~qlr~~reeqeqki~~~~~~~~ 101 (1015)
.+.++-.-|-.-+.+-++....+..+++.++.+......+...+..+-.+ ...-.. ..--++=+++|..+ ...-
T Consensus 18 ~~i~~l~~al~~L~~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~--~~s~~eLeq~l~~~-~~~L 94 (240)
T PF12795_consen 18 ALIQDLQQALSFLDEIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILA--NLSLEELEQRLSQE-QAQL 94 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcc--cCCHHHHHHHHHHH-HHHH
Confidence 33334444444444445556777777888888777777777776666443 111110 11122233444443 2233
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 001773 102 KQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIV 181 (1015)
Q Consensus 102 ~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~L 181 (1015)
.+|..-......++..+......+...+......++.....+...... +.-.+...+...+.-+...|..++..+
T Consensus 95 ~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~-----~~~~l~~a~~~~l~ae~~~l~~~~~~l 169 (240)
T PF12795_consen 95 QELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPN-----GESPLSEAQRWLLQAELAALEAQIEML 169 (240)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCC-----CcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433333333333333222211000 001223555555566666666666666
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 182 SKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRL 223 (1015)
Q Consensus 182 qeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrL 223 (1015)
+.++.......+..+...+.+..++..+...+..|+..+...
T Consensus 170 e~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~ 211 (240)
T PF12795_consen 170 EQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQK 211 (240)
T ss_pred HHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655555555555555555555555555555555554443
No 126
>PRK11281 hypothetical protein; Provisional
Probab=93.94 E-value=3.3 Score=54.54 Aligned_cols=182 Identities=14% Similarity=0.104 Sum_probs=81.0
Q ss_pred HHHHhhhhHHH---HHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHH-HHHHh-hhHHHHHHHHHHHHHHhhhHHHH
Q 001773 33 AEEAVSGWEKA---EAEALALKNHLESVTLSKLTAEDRAAHLDGALKECM-RQIRN-LKEEHEQKLQDFVLTKTKQWDKI 107 (1015)
Q Consensus 33 aeeav~gweka---e~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~-~qlr~-~reeqeqki~~~~~~~~~e~e~~ 107 (1015)
-+.|..-+.++ +.++..++++++++.++...+..++..|-.....-. +.+.. .-.+-|+++-+. ...-++|+..
T Consensus 65 l~~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~-~~~Lq~~Q~~ 143 (1113)
T PRK11281 65 LEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQT-LDQLQNAQND 143 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHH-HHHHHHHHHH
Confidence 35555555555 467778888888888887777777554332111110 00000 001133333333 2222233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 108 RLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKS-QAEAEIELLKGNIEQCEREINSAKYELHIVSKELE 186 (1015)
Q Consensus 108 ~~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiE-rlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELE 186 (1015)
-..+..++..++.+.++.++.+......+++.++.+....-.-+ =.+.+...++.+...++.++.-++.++.......+
T Consensus 144 La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~ 223 (1113)
T PRK11281 144 LAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQD 223 (1113)
T ss_pred HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 34444444444444444444444444444433332221100000 00223344444444444445555555555555555
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001773 187 IRNEEKNMSMRSAEAANKQHMEGVKKIAK 215 (1015)
Q Consensus 187 il~EEle~s~qsaeal~KQ~lEl~KKLaK 215 (1015)
.....+++....++.++.++..++..+..
T Consensus 224 l~~~q~d~~~~~~~~~~~~~~~lq~~in~ 252 (1113)
T PRK11281 224 LLQKQRDYLTARIQRLEHQLQLLQEAINS 252 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555554444444443
No 127
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=93.81 E-value=9.7 Score=44.71 Aligned_cols=137 Identities=10% Similarity=0.075 Sum_probs=80.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-----
Q 001773 96 FVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCERE----- 170 (1015)
Q Consensus 96 ~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE----- 170 (1015)
+...-..+|+..-..+...+.+...-..++..++.....++......|..|...+....+-+.+.+-|+++-...
T Consensus 234 ~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vEl 313 (384)
T PF03148_consen 234 TANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVEL 313 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHH
Confidence 333334444444444444444444444444444555555555555666666666666777777777777653321
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhhccCC
Q 001773 171 -----INSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQR---LRGLVRKKLP 232 (1015)
Q Consensus 171 -----~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqr---Lr~l~rk~lp 232 (1015)
...|-.|+..+..-+..+...+......+..+...+..+...|.-...-+.- --+.+|+++|
T Consensus 314 crD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~K~~sL~iD~~~c~~~R~~~~ 383 (384)
T PF03148_consen 314 CRDPPQYGLIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIAVKNNSLFIDRERCMQLRRRYP 383 (384)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCC
Confidence 2345666777777777777777777777777777777777766665555522 2245667666
No 128
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=93.71 E-value=23 Score=43.65 Aligned_cols=88 Identities=28% Similarity=0.327 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHhhhhhccCCChHHH----HHhHHHHhhhcCCcCCccccCCCCCCCCCCCCCCcccchhhhHhhhhh
Q 001773 210 VKKIAKLEAECQRLRGLVRKKLPGPAAL----AQMKMEVESLGRDYGDSRLKRSPVKPTSPHLSPVSEFSLDNVQKFQKE 285 (1015)
Q Consensus 210 ~KKLaKLEaEcqrLr~l~rk~lpgpaa~----a~mk~ev~~~~~~~~~~r~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (1015)
-..|.++++.+..+..|.||--|-|..+ .+|+.|+..|-.
T Consensus 296 p~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~------------------------------------ 339 (557)
T COG0497 296 PNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDN------------------------------------ 339 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhh------------------------------------
Confidence 3467889999999999999988866555 567777765431
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHhhh
Q 001773 286 NEFLTERLLAMEEETKMLKEALAKRNSELQASRNLCAKTASKLQSLEAQMQTS 338 (1015)
Q Consensus 286 ~~~l~~rl~~~eee~k~lke~l~~~~~elq~sr~~~a~t~~kl~~~e~q~~~~ 338 (1015)
.-+.+..+|.+.+.|++-+-+....|-..|-.+|+...+ .+..+|+.+
T Consensus 340 ---~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~--~v~~eL~~L 387 (557)
T COG0497 340 ---SEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELEK--EVTAELKAL 387 (557)
T ss_pred ---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhc
Confidence 134567788999999999999999999999999998765 466666655
No 129
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=93.69 E-value=4 Score=43.17 Aligned_cols=122 Identities=30% Similarity=0.333 Sum_probs=88.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhH
Q 001773 730 FSLEEFEELKLEKDNLATDLARCTENLEMTKSQL-----------YETEQLLAEVKAQLASAQKSNSLAETQLKCMAESY 798 (1015)
Q Consensus 730 ~s~EeleqLEsEkeelE~eLee~~eklEel~~qL-----------qelE~~LeELesQLesLqeS~selE~qLk~~~e~~ 798 (1015)
.+-+.|.+|+-|...++..+..+......-..-+ .++...-.++..+|..++...+.+|.||+.|....
T Consensus 8 ~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQLeyMRkmv 87 (178)
T PF14073_consen 8 NLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEKQLEYMRKMV 87 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888877777765544333222222 12223456899999999999999999999998887
Q ss_pred HHHHHHHHH-H-------------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q 001773 799 RSLETHAQE-L-------------EAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNE 851 (1015)
Q Consensus 799 edLesrL~e-L-------------eaEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~~~ 851 (1015)
...+..-+. + ..++....+|++.|+.|.-.+...-.-.+.||..|+++|..=.
T Consensus 88 ~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEe 154 (178)
T PF14073_consen 88 ESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEEE 154 (178)
T ss_pred HHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776643322 1 1455667789999999999999999999999999999998543
No 130
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=93.62 E-value=4.7 Score=44.45 Aligned_cols=81 Identities=19% Similarity=0.244 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 144 IKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRL 223 (1015)
Q Consensus 144 ~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrL 223 (1015)
..+..++...+.++..++.+++...+++...+..+..+...+..+...+...............+....+...+..+..+
T Consensus 59 ~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 138 (302)
T PF10186_consen 59 QQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQL 138 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555555555555555555555555544444333333333344444444444444444333
Q ss_pred h
Q 001773 224 R 224 (1015)
Q Consensus 224 r 224 (1015)
.
T Consensus 139 ~ 139 (302)
T PF10186_consen 139 Q 139 (302)
T ss_pred H
Confidence 3
No 131
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=93.61 E-value=23 Score=43.33 Aligned_cols=41 Identities=22% Similarity=0.136 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHH
Q 001773 40 WEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMR 80 (1015)
Q Consensus 40 wekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~ 80 (1015)
-.-+..|+..+++.++.+...+.....++.....+++...+
T Consensus 132 L~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~ 172 (522)
T PF05701_consen 132 LDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEE 172 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555566666666555555555554444444444433
No 132
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=93.56 E-value=16 Score=43.69 Aligned_cols=33 Identities=9% Similarity=0.065 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 105 DKIRLEFEAKIANFEQELLRSAAENATLSRSLQ 137 (1015)
Q Consensus 105 e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLe 137 (1015)
..-+..+..++..+..++..++.++..+...+.
T Consensus 164 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 196 (457)
T TIGR01000 164 QTQNEAAEKTKAQLDQQISKTDQKLQDYQALKN 196 (457)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444443333
No 133
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=93.53 E-value=30 Score=44.41 Aligned_cols=197 Identities=21% Similarity=0.224 Sum_probs=104.3
Q ss_pred hhHHhHHHHHHHHHhhhcchhhHHHHhhhHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHH
Q 001773 2 EEQIKELNEKLSAANSEISAKEDLVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQ 81 (1015)
Q Consensus 2 ~~~~~~l~ekl~~a~~~~~~kd~lvkqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~q 81 (1015)
..+|+.|+|||-++-.-- ++ .|+|+ .|..-+|=||+...-=++-+-.+.+.|..-|+..-.+
T Consensus 230 r~QvrdLtEkLetlR~kR--~E----Dk~Kl------------~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e 291 (1243)
T KOG0971|consen 230 RAQVRDLTEKLETLRLKR--AE----DKAKL------------KELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKE 291 (1243)
T ss_pred HHHHHHHHHHHHHHHhhh--hh----hHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888887643221 12 24444 4566677778777777777777777777777777766
Q ss_pred HHhhhHHHHHHHHH------HHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 001773 82 IRNLKEEHEQKLQD------FVLTKTKQWDKIRLEF-EAKIANFEQELLRSAAENATLSRSLQERSNMLIKIS------- 147 (1015)
Q Consensus 82 lr~~reeqeqki~~------~~~~~~~e~e~~~~EL-EaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~------- 147 (1015)
.+.+.+-+++-..+ +|...|-+ .++ |.+-..++.+++.++..++.+.-.++-+..++.+--
T Consensus 292 ~keaqe~ke~~k~emad~ad~iEmaTld-----KEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~s 366 (1243)
T KOG0971|consen 292 AKEAQEAKERYKEEMADTADAIEMATLD-----KEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAAS 366 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc
Confidence 66666666543322 21111111 111 111122223333333333333333322222221110
Q ss_pred -HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 148 -EEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQ 221 (1015)
Q Consensus 148 -eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcq 221 (1015)
-+..+++.+-.-|++-+-.+..-++.-+.+...+.++++....|+..+++..+.++.+.....-+|+.|.+.+.
T Consensus 367 s~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVD 441 (1243)
T KOG0971|consen 367 SYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVD 441 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01112222222222222233333333445566677788888888888888888888888888888888877764
No 134
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=93.52 E-value=32 Score=44.68 Aligned_cols=116 Identities=15% Similarity=0.103 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 109 LEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIR 188 (1015)
Q Consensus 109 ~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil 188 (1015)
.++..++..+.+.|.....++..+.....++.++|.......+....+...|.+++-++++++..|-.+|+.+..-
T Consensus 484 ~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t---- 559 (1195)
T KOG4643|consen 484 EELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTT---- 559 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----
Confidence 3344444444555555555555555555555566666666666666667777777777777777777777766552
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 001773 189 NEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRK 229 (1015)
Q Consensus 189 ~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk 229 (1015)
.+....+.+......-.+.+..+-+.+|. .+++-+-.+++
T Consensus 560 ~qn~~~LEq~~n~lE~~~~elkk~idaL~-alrrhke~LE~ 599 (1195)
T KOG4643|consen 560 SQNGALLEQNNNDLELIHNELKKYIDALN-ALRRHKEKLEE 599 (1195)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 22334444444455555555555555555 44444444444
No 135
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=93.48 E-value=24 Score=43.06 Aligned_cols=219 Identities=17% Similarity=0.236 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001773 108 RLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLI----------KISEEKSQAEAEIELLKGNIEQCEREINSAKYE 177 (1015)
Q Consensus 108 ~~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~----------EL~eeiErlEgEi~LLkERIenlEKE~e~LK~E 177 (1015)
+...+.....+...|.+.+..+..|...+...+..|. ....++..++..+......+..-..-...|+..
T Consensus 304 ~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~ 383 (570)
T COG4477 304 KNVVEENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDN 383 (570)
T ss_pred HHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3444444445555666666666666666665555443 233344444555555555555555555667777
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhccCCC-hHHHHHhHHHHhhhcCCcCCcc
Q 001773 178 LHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLR-GLVRKKLPG-PAALAQMKMEVESLGRDYGDSR 255 (1015)
Q Consensus 178 L~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr-~l~rk~lpg-paa~a~mk~ev~~~~~~~~~~r 255 (1015)
+..+.+.+..++.+.......+..+.+.-.+....+..+...+.... -|-+..||| |--+-.|+...+.--++... +
T Consensus 384 l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~mek~nLPGlPe~~l~l~~~~~~~i~~l~~-e 462 (570)
T COG4477 384 LEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRYMEKSNLPGLPETFLSLFFTAGHEIQDLMK-E 462 (570)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhhhhHHHHHHH-H
Confidence 77777777777777777777778888888888888888877775554 455678999 88777776544321111110 1
Q ss_pred ccCCCCCCCCCCCCCCcccchhhhHhhhhhhHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHH---HHHHHHhhhhHHHHH
Q 001773 256 LKRSPVKPTSPHLSPVSEFSLDNVQKFQKENEFLTERLLAMEEETKMLKEALAKRNSELQAS---RNLCAKTASKLQSLE 332 (1015)
Q Consensus 256 ~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~eee~k~lke~l~~~~~elq~s---r~~~a~t~~kl~~~e 332 (1015)
+.+-| .+| -....-.+-.+..+..+++++-.+-+--.=-.-=||++ |.-++.-+..|+..|
T Consensus 463 Lse~p-----inm-----------~~v~~~v~~a~~~m~~l~~~t~e~ve~a~LaE~lIQY~NRYRs~~~~v~~~l~eAe 526 (570)
T COG4477 463 LSEVP-----INM-----------EAVSALVDIATEDMNTLEDETEEVVENAVLAEQLIQYGNRYRSRNAEVAKSLNEAE 526 (570)
T ss_pred HhhcC-----CcH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 11111 111 11122223344555555555443322111111226766 566777888888888
Q ss_pred HHHhhhcccCC
Q 001773 333 AQMQTSTQQKS 343 (1015)
Q Consensus 333 ~q~~~~~~~~~ 343 (1015)
..+....+++.
T Consensus 527 ~lF~~~~dY~~ 537 (570)
T COG4477 527 RLFENAFDYDA 537 (570)
T ss_pred HHHHHhcchhH
Confidence 88875555444
No 136
>PRK01156 chromosome segregation protein; Provisional
Probab=93.45 E-value=32 Score=44.47 Aligned_cols=84 Identities=12% Similarity=0.158 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 001773 761 SQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKC 840 (1015)
Q Consensus 761 ~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLeaEl~eLqeKVesLE~ELe~ek~~~eEleaK~ 840 (1015)
.++......+.+++.++..+...+..+..++..+.... ..+...+.++..+......++.++..+...+..+..++
T Consensus 629 ~~le~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l~~~~----~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i 704 (895)
T PRK01156 629 NNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSII----PDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTI 704 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444332211 11222333444444444444444444444444444444
Q ss_pred HHHHHHHH
Q 001773 841 KELEEQLQ 848 (1015)
Q Consensus 841 keLEeQLe 848 (1015)
..+..++.
T Consensus 705 ~~l~~~~~ 712 (895)
T PRK01156 705 EILRTRIN 712 (895)
T ss_pred HHHHhhHH
Confidence 44444433
No 137
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.28 E-value=17 Score=46.99 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 001773 800 SLETHAQELEAEVNLLRAKIESLENELQDEKMSHH 834 (1015)
Q Consensus 800 dLesrL~eLeaEl~eLqeKVesLE~ELe~ek~~~e 834 (1015)
++-.+|...+.++.++..+++.+.+.++.++..+.
T Consensus 860 ~~vq~y~~r~~el~~l~~~~~~~~~~le~i~~kl~ 894 (1072)
T KOG0979|consen 860 DAVQQYEVREDELRELETKLEKLSEDLERIKDKLS 894 (1072)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Confidence 33444444444444444444444444444444443
No 138
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=93.25 E-value=0.28 Score=61.61 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=26.2
Q ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHHhhhhhHH
Q 001773 283 QKENEFLTERLLAMEEETKMLKEALAKRNSELQ 315 (1015)
Q Consensus 283 ~~~~~~l~~rl~~~eee~k~lke~l~~~~~elq 315 (1015)
.+++.-|-..|...+--+..||++.++|-.|.-
T Consensus 605 ~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr 637 (722)
T PF05557_consen 605 EKEIAELKAELASAEKRNQRLKEVFKAKSQEFR 637 (722)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777888888889999999999988764
No 139
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=93.18 E-value=8.7 Score=42.53 Aligned_cols=168 Identities=20% Similarity=0.205 Sum_probs=100.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001773 731 SLEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEA 810 (1015)
Q Consensus 731 s~EeleqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLea 810 (1015)
..+.+.+++.+.......|......+..+...++.++..-..|+.....+...+..++.+..........|...+..+..
T Consensus 10 le~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~ 89 (246)
T PF00769_consen 10 LEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEA 89 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557778888888888888888788888888888777777777777777777777777776666666777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh----hh----------------cc-c------chhhhh
Q 001773 811 EVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNEN----CA----------------VC-S------SEADEN 863 (1015)
Q Consensus 811 El~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~~~~----~~----------------lk-~------q~~kdL 863 (1015)
++..+...+..-+.|...++..+.........-..+|..+-. .. .. . ..+.+.
T Consensus 90 ~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~~~~~~~~p~~~~v~~~~~~~~~~~~~~~~~~s~dl~~~~~~ 169 (246)
T PF00769_consen 90 EIARLEEESERKEEEAEELQEELEEAREDEEEAKEELLEVMSAPPPPPHHPVAEPDEGDEDENDEENSEYSADLETDGDM 169 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTTS--GGGS------------------EEEE---T-T-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCCCCCCCccccccccccccccccccccc
Confidence 777777777777777777777777777666666666622211 00 00 0 111111
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 001773 864 KIKQDRDLAAAAERLAECQETILLLGKQLKSLRPQ 898 (1015)
Q Consensus 864 KikqEkEIaaAeeKLAEcQeTI~sLEKQLKsLa~~ 898 (1015)
+...+++-....+|=.-.|..+..|..+|..++..
T Consensus 170 ~~~sEeeR~t~~EKnk~lq~QL~~L~~EL~~~kde 204 (246)
T PF00769_consen 170 KDRSEEERVTYAEKNKRLQEQLKELKSELEQLKDE 204 (246)
T ss_dssp -TCGGGC---HHHH-HHHHHHHHHHHHHHHTTB-C
T ss_pred cchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhh
Confidence 12223444455567778888889999999888765
No 140
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.02 E-value=24 Score=42.18 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 001773 101 TKQWDKIRLEFEAKIANFEQELLR 124 (1015)
Q Consensus 101 ~~e~e~~~~ELEaKLaElEkeLee 124 (1015)
+++|++.|.-+..+...+...+..
T Consensus 313 tqqwed~R~pll~kkl~Lr~~l~~ 336 (521)
T KOG1937|consen 313 TQQWEDTRQPLLQKKLQLREELKN 336 (521)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhc
Confidence 699999999998888777554443
No 141
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=92.85 E-value=29 Score=42.32 Aligned_cols=177 Identities=19% Similarity=0.151 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHhHHHHhhh------------------hhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Q 001773 41 EKAEAEALALKNHLESVTLS------------------KLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTK 102 (1015)
Q Consensus 41 ekae~e~~~lK~~Le~~~~q------------------~~~le~rv~hLd~aLKec~~qlr~~reeqeqki~~~~~~~~~ 102 (1015)
-.++.|+..++.+|+++.+. ...|++|+.-||.||+-.. +.-...+.. ..+.+-
T Consensus 119 ~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~-------~~~~~~~~~-fl~rtl 190 (511)
T PF09787_consen 119 QELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKRED-------GNAITAVVE-FLKRTL 190 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC-------ccHHHHHHH-HHHHHH
Confidence 44567788888888887211 1344444444444444322 222223333 366777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHH-
Q 001773 103 QWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKY-ELHI- 180 (1015)
Q Consensus 103 e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~-EL~~- 180 (1015)
.|+..+..|+.+.. +...+.....+...+...++-+.........+..++..... --++..++.++.|+. -+..
T Consensus 191 ~~e~~~~~L~~~~~-A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~---~iLq~kEklI~~LK~~~~~~~ 266 (511)
T PF09787_consen 191 KKEIERQELEERPK-ALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQ---RILQSKEKLIESLKEGCLEEG 266 (511)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHhcCHHHHHHHHHhcccccc
Confidence 88888888888887 55567777777777777777777666666666666653322 123444555566655 2211
Q ss_pred HH-----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 001773 181 VS-----KELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRK 229 (1015)
Q Consensus 181 Lq-----eELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk 229 (1015)
.. -+++.+..|++..+..+..+..|+..+...+...+..+..-....|+
T Consensus 267 ~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~ 320 (511)
T PF09787_consen 267 FDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFRE 320 (511)
T ss_pred cccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 11 12556666666666666666666666666666666655544444433
No 142
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.77 E-value=5.4 Score=39.76 Aligned_cols=95 Identities=17% Similarity=0.204 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001773 733 EEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEV 812 (1015)
Q Consensus 733 EeleqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLeaEl 812 (1015)
--++.|.+.+..++.++..++.++..+..+...+...|-.|-.+.+.++. ...++..+...+.+++.++..+-.=+
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~----~~~~~~~L~~el~~l~~ry~t~Lell 91 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRA----LKKEVEELEQELEELQQRYQTLLELL 91 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45788888888888888888888888888887777777776666655533 22233333333444444444433333
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 001773 813 NLLRAKIESLENELQDEKM 831 (1015)
Q Consensus 813 ~eLqeKVesLE~ELe~ek~ 831 (1015)
-+..+.++-|+.++.+.+.
T Consensus 92 GEK~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 92 GEKSEEVEELRADVQDLKE 110 (120)
T ss_pred cchHHHHHHHHHHHHHHHH
Confidence 3333444444444444333
No 143
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=92.76 E-value=2.4 Score=50.74 Aligned_cols=107 Identities=19% Similarity=0.168 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhcccchhhhhhhhhHHHHHHHHHHHHHHHH
Q 001773 804 HAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCSSEADENKIKQDRDLAAAAERLAECQE 883 (1015)
Q Consensus 804 rL~eLeaEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~~~~~~lk~q~~kdLKikqEkEIaaAeeKLAEcQe 883 (1015)
.+..+..++.++++....|..+|-.++.....+.....++-+-|..+. +-......++...+.|+|||..
T Consensus 220 el~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~----------da~~ql~aE~~EleDkyAE~m~ 289 (596)
T KOG4360|consen 220 ELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYK----------DAQRQLTAELEELEDKYAECMQ 289 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH----------hhHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444333333333333332222 1122345588889999999999
Q ss_pred HHHHHHHHHHhccCCCcccCCCCccccccCCCCCCCC
Q 001773 884 TILLLGKQLKSLRPQSEVIGSPYSERSQKGEFLPGEP 920 (1015)
Q Consensus 884 TI~sLEKQLKsLa~~~e~~~~~~~~~~~~~~~~~~~~ 920 (1015)
...+-+..|+.|++-.-+-..++.--+..--|.++..
T Consensus 290 ~~~EaeeELk~lrs~~~p~~~s~~~~~~~~~fp~~~~ 326 (596)
T KOG4360|consen 290 MLHEAEEELKCLRSCDAPKLISQEALSHGHHFPQLSL 326 (596)
T ss_pred HHHHHHHHHHhhccCCCcchhHHHHHHhhhhCChhhH
Confidence 9999999999999876655544332212224555444
No 144
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=92.76 E-value=8.4 Score=46.14 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=19.9
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 729 KFSLEEFEELKLEKDNLATDLARCTE 754 (1015)
Q Consensus 729 ~~s~EeleqLEsEkeelE~eLee~~e 754 (1015)
.|...++.+++.++...+..+..++.
T Consensus 164 ~fl~~ql~~~~~~L~~ae~~l~~f~~ 189 (498)
T TIGR03007 164 RFIDEQIKTYEKKLEAAENRLKAFKQ 189 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667788888888888888887764
No 145
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=92.67 E-value=14 Score=39.94 Aligned_cols=101 Identities=24% Similarity=0.232 Sum_probs=58.3
Q ss_pred hHHHH--HHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001773 40 WEKAE--AEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIAN 117 (1015)
Q Consensus 40 wekae--~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qlr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaE 117 (1015)
||=-. .|+.-||+||-+++..+..=-.-+-.|-+.||+---+++ .++.+-..+.+++..++.+.+....++..+..+
T Consensus 3 WevCqk~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~-~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~E 81 (202)
T PF06818_consen 3 WEVCQKSGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELR-NKESQIQELQDSLRTKQLELEVCENELQRKKNE 81 (202)
T ss_pred chHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCH
Confidence 55443 689999999999888766655666666666665544443 344455556666666666665555554444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 118 FEQELLRSAAENATLSRSLQERSNMLIK 145 (1015)
Q Consensus 118 lEkeLeelkaEl~aLeeqLeelqeeI~E 145 (1015)
. +-++..+..++..+..+...+..
T Consensus 82 a----~lLrekl~~le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 82 A----ELLREKLGQLEAELAELREELAC 105 (202)
T ss_pred H----HHhhhhhhhhHHHHHHHHHHHHh
Confidence 2 33344444444444444444433
No 146
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=92.66 E-value=2 Score=49.10 Aligned_cols=126 Identities=15% Similarity=0.127 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 001773 762 QLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCK 841 (1015)
Q Consensus 762 qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLeaEl~eLqeKVesLE~ELe~ek~~~eEleaK~k 841 (1015)
.+..+...+..|+.+...+...+..++.+-..+..++..++.+...+..+-.+.-...+.+.-++.........+.+++.
T Consensus 44 ~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~ 123 (314)
T PF04111_consen 44 DIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYE 123 (314)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555556666666666666677777766667777788888888888888888889999
Q ss_pred HHHHHHHhhhh-hhccc----chh------hhh------hhhhH-HHHHHHHHHHHHHHHHHHH
Q 001773 842 ELEEQLQRNEN-CAVCS----SEA------DEN------KIKQD-RDLAAAAERLAECQETILL 887 (1015)
Q Consensus 842 eLEeQLe~~~~-~~lk~----q~~------kdL------KikqE-kEIaaAeeKLAEcQeTI~s 887 (1015)
....+|.+... +.... ..+ ..+ ....+ .||++|=+..+=.-.+|..
T Consensus 124 ~~~~~L~~L~ktNv~n~~F~I~hdG~fGTINGlRLGrl~~~~V~W~EINAA~Gq~~LLL~~la~ 187 (314)
T PF04111_consen 124 YASNQLDRLRKTNVYNDTFHIWHDGPFGTINGLRLGRLPNVPVEWNEINAAWGQTALLLQTLAK 187 (314)
T ss_dssp HHHHHHHCHHT--TTTTT--EEEETTEEEETTEEE--BTTB---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCchhceeeEeecCCeeeECCeeeccCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 99999998775 11100 000 001 11122 3899998887776666554
No 147
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=92.61 E-value=29 Score=41.67 Aligned_cols=141 Identities=13% Similarity=0.236 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 72 DGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKS 151 (1015)
Q Consensus 72 d~aLKec~~qlr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiE 151 (1015)
|=||.|..+-|....-.|+-+|++. .--..-|+.++.+++-+..+ ...+-.-+.++...|.+|.+.+-
T Consensus 312 dmaLNEvL~kLk~tn~kQq~~IqdL--------q~sN~yLe~kvkeLQ~k~~k----QqvfvDiinkLk~niEeLIedKY 379 (527)
T PF15066_consen 312 DMALNEVLQKLKHTNRKQQNRIQDL--------QCSNLYLEKKVKELQMKITK----QQVFVDIINKLKENIEELIEDKY 379 (527)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHh--------hhccHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHhHh
Confidence 5579999999999999999999986 23334456666555443222 12233333444444444444444
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001773 152 QAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLR 224 (1015)
Q Consensus 152 rlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr 224 (1015)
++-=+.+-....++++..-.+..+..|..-..+.+.+.-++.......-.++..|..-...-.+.-..|-.+.
T Consensus 380 ~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmd 452 (527)
T PF15066_consen 380 RVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMD 452 (527)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4433334344444444444444444444444444444434333333333333333333333333333333333
No 148
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.49 E-value=10 Score=42.60 Aligned_cols=118 Identities=16% Similarity=0.114 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---
Q 001773 107 IRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSK--- 183 (1015)
Q Consensus 107 ~~~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~Lqe--- 183 (1015)
.-.+++.....++.+++.+..+...+...+++.+..+.++..++.+++++|..++++|. .+...|+.+.+..+.
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~---~r~~~l~~raRAmq~nG~ 115 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV---ERQELLKKRARAMQVNGT 115 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHcCC
Confidence 33444455555555555555555556666666666666666666666666666666665 233334443333322
Q ss_pred -------------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001773 184 -------------------ELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLV 227 (1015)
Q Consensus 184 -------------------ELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~ 227 (1015)
++..+..=.++...-+......+..+..+-..++..+..+.++.
T Consensus 116 ~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~ 178 (265)
T COG3883 116 ATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQ 178 (265)
T ss_pred hhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555555555556666666655554
No 149
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=92.39 E-value=42 Score=43.09 Aligned_cols=150 Identities=13% Similarity=0.132 Sum_probs=72.1
Q ss_pred HHHHHHHHHhhhHHHHHHH--HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Q 001773 75 LKECMRQIRNLKEEHEQKL--QDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERS-------NMLIK 145 (1015)
Q Consensus 75 LKec~~qlr~~reeqeqki--~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLeelq-------eeI~E 145 (1015)
|+.-..||+..|.+-++-. .+-...+-..|+.--.++..++.++...-..+..++.....+++..+ +.+.+
T Consensus 391 Lr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~ 470 (980)
T KOG0980|consen 391 LRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTN 470 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4444455555555444322 23335555566665556666666665554554444444444444333 34444
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001773 146 ISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRG 225 (1015)
Q Consensus 146 L~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~ 225 (1015)
+...++++..+...+.-+.+...+-.+.++.|+..+..+++.+...+..+ ...+......+..+..+-.++-+
T Consensus 471 L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~-------~qs~~~~~~~l~~~l~~KD~~~~ 543 (980)
T KOG0980|consen 471 LNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNL-------AQSHNNQLAQLEDLLKQKDRLAA 543 (980)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-------HHHHHHHHHHHHHHHHhhHHHHH
Confidence 44444444444444445555555555555555555555555554443333 22333333333444444444444
Q ss_pred hhhccC
Q 001773 226 LVRKKL 231 (1015)
Q Consensus 226 l~rk~l 231 (1015)
.+++++
T Consensus 544 ~~~~~~ 549 (980)
T KOG0980|consen 544 ELVARE 549 (980)
T ss_pred HHHHHH
Confidence 444444
No 150
>PRK01156 chromosome segregation protein; Provisional
Probab=92.23 E-value=45 Score=43.11 Aligned_cols=7 Identities=14% Similarity=0.591 Sum_probs=2.7
Q ss_pred HHHHHHh
Q 001773 527 EDIKRVV 533 (1015)
Q Consensus 527 ~~ik~~l 533 (1015)
+.++.++
T Consensus 440 ~el~~~~ 446 (895)
T PRK01156 440 DELSRNM 446 (895)
T ss_pred HHHHHHH
Confidence 3344333
No 151
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.19 E-value=35 Score=44.38 Aligned_cols=41 Identities=24% Similarity=0.265 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 181 VSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQ 221 (1015)
Q Consensus 181 LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcq 221 (1015)
...+++.....++.+++..+..++.+....+.|..++++++
T Consensus 316 ~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~ 356 (1072)
T KOG0979|consen 316 IEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQ 356 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33333333334444444444444444444444444444443
No 152
>PRK12704 phosphodiesterase; Provisional
Probab=92.07 E-value=14 Score=45.30 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=10.7
Q ss_pred HhhhHHHHHHHHHHHHHHHHHH
Q 001773 100 KTKQWDKIRLEFEAKIANFEQE 121 (1015)
Q Consensus 100 ~~~e~e~~~~ELEaKLaElEke 121 (1015)
...++...|.+++..+.+.+.+
T Consensus 62 aeeE~~~~R~Ele~e~~~~e~~ 83 (520)
T PRK12704 62 AKEEIHKLRNEFEKELRERRNE 83 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555544444333
No 153
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=92.04 E-value=4.9 Score=44.15 Aligned_cols=27 Identities=19% Similarity=0.401 Sum_probs=16.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001773 93 LQDFVLTKTKQWDKIRLEFEAKIANFEQ 120 (1015)
Q Consensus 93 i~~~~~~~~~e~e~~~~ELEaKLaElEk 120 (1015)
|.++ -.++.++++++..+-..+..++.
T Consensus 3 i~~i-r~K~~~lek~k~~i~~e~~~~e~ 29 (230)
T PF10146_consen 3 IKEI-RNKTLELEKLKNEILQEVESLEN 29 (230)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 56677777777777666665533
No 154
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=92.00 E-value=7.3 Score=43.12 Aligned_cols=111 Identities=19% Similarity=0.192 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 115 IANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNM 194 (1015)
Q Consensus 115 LaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~ 194 (1015)
..+++.+|..+..++......|......+..|.++...++.+...|..+...++..+.+|+.+.....++...+..++..
T Consensus 7 k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e 86 (246)
T PF00769_consen 7 KQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELRE 86 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555556666666666666666666666677777777777777777666666666666666555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001773 195 SMRSAEAANKQHMEGVKKIAKLEAECQRLRG 225 (1015)
Q Consensus 195 s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~ 225 (1015)
....+..+.............+..++...+.
T Consensus 87 ~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 87 AEAEIARLEEESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555454444555544444333
No 155
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=91.90 E-value=6.5 Score=45.89 Aligned_cols=90 Identities=17% Similarity=0.280 Sum_probs=41.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhcccchhhhhhhhh
Q 001773 788 ETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCSSEADENKIKQ 867 (1015)
Q Consensus 788 E~qLk~~~e~~edLesrL~eLeaEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~~~~~~lk~q~~kdLKikq 867 (1015)
..|+..+-..|+.+..+|.+.+.++++...-|..+..+|..+. .++.+.+.+|+..|.. + ....-..++++
T Consensus 265 N~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~Is-------eeLe~vK~emeerg~~-m-tD~sPlv~IKq 335 (359)
T PF10498_consen 265 NNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEIS-------EELEQVKQEMEERGSS-M-TDGSPLVKIKQ 335 (359)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-------HHHHHHHHHHHHhcCC-C-CCCCHHHHHHH
Confidence 3355555555555555555555555555555555554444333 2333334444433320 0 02222224444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001773 868 DRDLAAAAERLAECQETILLL 888 (1015)
Q Consensus 868 EkEIaaAeeKLAEcQeTI~sL 888 (1015)
.|..+...+..+-..|--+
T Consensus 336 --Al~kLk~EI~qMdvrIGVl 354 (359)
T PF10498_consen 336 --ALTKLKQEIKQMDVRIGVL 354 (359)
T ss_pred --HHHHHHHHHHHhhhhhhee
Confidence 5555555555555444433
No 156
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=91.85 E-value=21 Score=38.37 Aligned_cols=167 Identities=17% Similarity=0.156 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 001773 42 KAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQE 121 (1015)
Q Consensus 42 kae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qlr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEke 121 (1015)
|-..|...|+..++.+..-+..|-..+.. |+.+|+-+. |-++-+ -.-..|.++ +..-+..++.+
T Consensus 19 ~L~~en~kL~~~ve~~ee~na~L~~e~~~----L~~q~~s~Q-------qal~~a-K~l~eEled----Lk~~~~~lEE~ 82 (193)
T PF14662_consen 19 KLADENAKLQRSVETAEEGNAQLAEEITD----LRKQLKSLQ-------QALQKA-KALEEELED----LKTLAKSLEEE 82 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH-------HHHHHH-HHHHHHHHH----HHHHHHHHHHH
Confidence 33456677777777776666655555443 344443332 111111 111233333 33344455666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001773 122 LLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEA 201 (1015)
Q Consensus 122 LeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaea 201 (1015)
...+.++...+.+.-+.+-..|..+.++..++.+++..++-+...+...+..|+..+..-..-+-.+...+....+.++.
T Consensus 83 ~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~e 162 (193)
T PF14662_consen 83 NRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEE 162 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 66667777777777777777777888888888888888888888888888888888877666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 001773 202 ANKQHMEGVKKIAKLEAECQRLR 224 (1015)
Q Consensus 202 l~KQ~lEl~KKLaKLEaEcqrLr 224 (1015)
+...+.++..-...|..+..++.
T Consensus 163 L~~~ieEy~~~teeLR~e~s~LE 185 (193)
T PF14662_consen 163 LKKTIEEYRSITEELRLEKSRLE 185 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555555555555555554443
No 157
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=91.81 E-value=19 Score=45.39 Aligned_cols=152 Identities=18% Similarity=0.163 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001773 122 LLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEA 201 (1015)
Q Consensus 122 LeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaea 201 (1015)
++-++.++..|.+.|.-++..+.+.... ++..+ -....=.+-.+..-+-.|+.++.+..+.++.+...-+.+.+-++.
T Consensus 389 ~QplrsENaqLrRrLrilnqqlreqe~~-~k~~~-~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~ 466 (861)
T PF15254_consen 389 MQPLRSENAQLRRRLRILNQQLREQEKA-EKTSG-SQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIEN 466 (861)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhh-cccCC-CcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHH
Confidence 5667778888887777777666552211 11111 000011234555556666666666666666666665555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHHHHHhHHHHhh-hcCCcCCccccCCCCCCCCCCCCCCcccchhhhH
Q 001773 202 ANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKMEVES-LGRDYGDSRLKRSPVKPTSPHLSPVSEFSLDNVQ 280 (1015)
Q Consensus 202 l~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa~a~mk~ev~~-~~~~~~~~r~rr~~~~~~~~~~~~~~~~~~~~~~ 280 (1015)
...+-..+.+-+...+.++-..+... -.-.+++|.||+. |..
T Consensus 467 q~~Enk~~~~~~~ekd~~l~~~kq~~------d~e~~rik~ev~eal~~------------------------------- 509 (861)
T PF15254_consen 467 QKEENKRLRKMFQEKDQELLENKQQF------DIETTRIKIEVEEALVN------------------------------- 509 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH------HHHHHHHHHHHHHHHHH-------------------------------
Confidence 55555555554444454444333322 1234677888874 221
Q ss_pred hhhhhhHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHH
Q 001773 281 KFQKENEFLTERLLAMEEETKMLKEALAKRNSELQAS 317 (1015)
Q Consensus 281 ~~~~~~~~l~~rl~~~eee~k~lke~l~~~~~elq~s 317 (1015)
...+--+|.+.|-||+.|.=.|..|++|+-.-
T Consensus 510 -----~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL 541 (861)
T PF15254_consen 510 -----VKSLQFKLEASEKENQILGITLRQRDAEIERL 541 (861)
T ss_pred -----HHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHH
Confidence 11233467777788888888888888877633
No 158
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=91.80 E-value=18 Score=37.67 Aligned_cols=23 Identities=9% Similarity=0.294 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001773 870 DLAAAAERLAECQETILLLGKQL 892 (1015)
Q Consensus 870 EIaaAeeKLAEcQeTI~sLEKQL 892 (1015)
.+......+..++..+..++..|
T Consensus 153 ~~~~l~~~i~~l~rk~~~l~~~i 175 (177)
T PF13870_consen 153 EVEELRKEIKELERKVEILEMRI 175 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444555555555544444
No 159
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.80 E-value=16 Score=40.25 Aligned_cols=22 Identities=14% Similarity=0.474 Sum_probs=10.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHH
Q 001773 76 KECMRQIRNLKEEHEQKLQDFV 97 (1015)
Q Consensus 76 Kec~~qlr~~reeqeqki~~~~ 97 (1015)
+.+..+++..++.-.++|.+++
T Consensus 26 ~~~l~~~~~~~~~l~~~i~~~l 47 (302)
T PF10186_consen 26 RSELQQLKEENEELRRRIEEIL 47 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444555543
No 160
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=91.75 E-value=8.8 Score=48.55 Aligned_cols=59 Identities=10% Similarity=0.014 Sum_probs=28.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001773 154 EAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKL 216 (1015)
Q Consensus 154 EgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKL 216 (1015)
..+...+..+...++..+..++.++..+. ....++..+++.++...+.+..+..++.+.
T Consensus 344 ~~~~~~a~~~~~~L~~~l~~~~~~~~~~~----~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~ 402 (754)
T TIGR01005 344 LMQADAAQARESQLVSDVNQLKAASAQAG----EQQVDLDALQRDAAAKRQLYESYLTNYRQA 402 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433333222 224455556666666666666665555443
No 161
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=91.74 E-value=21 Score=43.58 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=12.1
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHH
Q 001773 100 KTKQWDKIRLEFEAKIANFEQELL 123 (1015)
Q Consensus 100 ~~~e~e~~~~ELEaKLaElEkeLe 123 (1015)
...+|...+.+++..+.+.+.++.
T Consensus 56 aeeE~~~~R~Ele~el~~~e~rL~ 79 (514)
T TIGR03319 56 AKEEVHKLRAELERELKERRNELQ 79 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566665555444444433
No 162
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=91.74 E-value=15 Score=38.25 Aligned_cols=107 Identities=16% Similarity=0.166 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 745 LATDLARCTENLEMTKSQLYETEQLLAEVK-AQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLE 823 (1015)
Q Consensus 745 lE~eLee~~eklEel~~qLqelE~~LeELe-sQLesLqeS~selE~qLk~~~e~~edLesrL~eLeaEl~eLqeKVesLE 823 (1015)
+.-.+...+.++..+..+++..+..=+.|. .....++..+..+...|+.-...+..+...+...-..+....+|+..+.
T Consensus 11 ~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~ 90 (177)
T PF13870_consen 11 LRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLS 90 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444433333222222 2333333333333344443333333333333333344444444444444
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q 001773 824 NELQDEKMSHHNAMAKCKELEEQLQRNE 851 (1015)
Q Consensus 824 ~ELe~ek~~~eEleaK~keLEeQLe~~~ 851 (1015)
.++...+..+......+.++..++..+.
T Consensus 91 ~~~~~l~~~l~~~~~~~~~~r~~l~~~k 118 (177)
T PF13870_consen 91 EELERLKQELKDREEELAKLREELYRVK 118 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444433
No 163
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.69 E-value=45 Score=41.89 Aligned_cols=124 Identities=19% Similarity=0.139 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc--cCCChHHHHHhHHHHhhhcCCcCCccccCC
Q 001773 185 LEIRNEEKNMSMRS---AEAANKQHMEGVKKIAKLEAECQRLRGLVRK--KLPGPAALAQMKMEVESLGRDYGDSRLKRS 259 (1015)
Q Consensus 185 LEil~EEle~s~qs---aeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk--~lpgpaa~a~mk~ev~~~~~~~~~~r~rr~ 259 (1015)
..++.+|++.++.. +..+..++.-+.-....+..++++|..+-.- .+|-|-++ |...|.-+.+..+..-.-++
T Consensus 277 v~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~rwE~~~~~~~~~~~~~~~--~~~~~~e~s~~~~l~~~~~t 354 (716)
T KOG4593|consen 277 VGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQRWERADQEMGSLRTPEDL--MEKLVNEQSRNANLKNKNST 354 (716)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHH--HHHHHHHHHHHhhhcccccc
Confidence 44555565555443 3566677777777888888999999988777 88888764 88888776655444321111
Q ss_pred CCCCCCCCCCCCcccchhhhHhhhhhhHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHH
Q 001773 260 PVKPTSPHLSPVSEFSLDNVQKFQKENEFLTERLLAMEEETKMLKEALAKRNSELQASRN 319 (1015)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~eee~k~lke~l~~~~~elq~sr~ 319 (1015)
-+ +|. .-....-.+.++..-=+.-+..++...|.|-+.|+.++-..+..++
T Consensus 355 ~~---s~~------~~~~r~~q~lke~~k~~~~ite~~tklk~l~etl~~~~~~~~~~~t 405 (716)
T KOG4593|consen 355 VT---SPA------RGLERARQLLKEELKQVAGITEEETKLKELHETLARRLQKRALLLT 405 (716)
T ss_pred cc---Ccc------cchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 111 0001111222333333555667777788888888877766654433
No 164
>PF13514 AAA_27: AAA domain
Probab=91.58 E-value=61 Score=43.23 Aligned_cols=301 Identities=21% Similarity=0.244 Sum_probs=0.0
Q ss_pred ChhHHhHHHHHHHHHhhhcchhhHHHHhhhHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHH
Q 001773 1 MEEQIKELNEKLSAANSEISAKEDLVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMR 80 (1015)
Q Consensus 1 l~~~~~~l~ekl~~a~~~~~~kd~lvkqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~ 80 (1015)
+...+..+-..|..+|..+.. +.-+.--...|+..+.-|+.+.+....+..++..+..+...++.+...+..++.+...
T Consensus 630 ~~~~~~~~~~~L~~~l~~~~~-~~~l~~~l~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1111)
T PF13514_consen 630 LRARRAAARAALAAALAALGP-AEELAALLEEAEALLEEWEQAAARREQLEEELQQLEQELEEAEAELQEAQEALEEWQE 708 (1111)
T ss_pred HHHHHHHHHHHHHHHHHhCCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH----------hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH
Q 001773 81 QIR----------NLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQE------RSNMLI 144 (1015)
Q Consensus 81 qlr----------~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLee------lqeeI~ 144 (1015)
+.. .+--..-...-+. ...-.+.......++.++..++..+..+..+...+-..+.. ....+.
T Consensus 709 ~w~~~l~~~gL~~~~~~~~~~~~l~~-l~~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~ 787 (1111)
T PF13514_consen 709 EWQEALAELGLPADASPEEALEALEL-LEELREALAEIRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALE 787 (1111)
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 001773 145 KISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSA----EAANKQHMEGVKKIAKLEAEC 220 (1015)
Q Consensus 145 EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsa----eal~KQ~lEl~KKLaKLEaEc 220 (1015)
.+...+........ ++..+..++..++.++..+...+..+..++..+...+ ...=............+..++
T Consensus 788 ~L~~~l~~a~~~~~----~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~a~~~~~e~l~~~~~~~~~~~~l~~~~ 863 (1111)
T PF13514_consen 788 ALRARLEEAREAQE----ERERLQEQLEELEEELEQAEEELEELEAELAELLEQAGVEDEEELREAEERAEERRELREEL 863 (1111)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhccCCChHHHHHhHHHHhhhcCCcCCccccCCCCCCCCCCCCCCcccchhhhHhhhhhhHHHHHHHHhHHHHH
Q 001773 221 QRLRGLVRKKLPGPAALAQMKMEVESLGRDYGDSRLKRSPVKPTSPHLSPVSEFSLDNVQKFQKENEFLTERLLAMEEET 300 (1015)
Q Consensus 221 qrLr~l~rk~lpgpaa~a~mk~ev~~~~~~~~~~r~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~eee~ 300 (1015)
..+...+..-..|. .+.....|++..- ......++.-+..++..++.+.
T Consensus 864 ~~~~~~l~~~~~~~-~~~~l~~e~~~~d------------------------------~~~l~~~l~~l~~~l~~l~~~~ 912 (1111)
T PF13514_consen 864 EDLERQLERQADGL-DLEELEEELEELD------------------------------PDELEAELEELEEELEELEEEL 912 (1111)
T ss_pred HHHHHHHHhhcCcc-cHHHHHHHhhccC------------------------------HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhhHHHHHH--HHHHhhhhHHHHHHHHhhh
Q 001773 301 KMLKEALAKRNSELQASRN--LCAKTASKLQSLEAQMQTS 338 (1015)
Q Consensus 301 k~lke~l~~~~~elq~sr~--~~a~t~~kl~~~e~q~~~~ 338 (1015)
..|.+-++..+.+|..... .|+.....+..++++|...
T Consensus 913 ~~l~~~~~~~~~~l~~l~~~~~~a~l~~e~e~~~a~l~~~ 952 (1111)
T PF13514_consen 913 EELQEERAELEQELEALEGDDDAAELEQEREEAEAELEEL 952 (1111)
T ss_pred HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
No 165
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.58 E-value=3.3 Score=47.32 Aligned_cols=78 Identities=24% Similarity=0.246 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 143 LIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAEC 220 (1015)
Q Consensus 143 I~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEc 220 (1015)
+..+..++..++.+...+.+.+..++++...+..++..++.+.+.+..+....-+.......++.+..++...++..+
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~ 122 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQY 122 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555556666666666666666666666666666665555555555555555555555555544443
No 166
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=91.58 E-value=40 Score=41.08 Aligned_cols=60 Identities=20% Similarity=0.277 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Q 001773 169 REINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLP 232 (1015)
Q Consensus 169 KE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lp 232 (1015)
.++..++.+|..+-..++.+.+.-. .+++.+.+.++. ...|-+|+.-++..++..-+|+.
T Consensus 455 ~eV~~vRqELa~lLssvQ~~~e~~~--~rkiaeiqg~l~--~~qi~kle~siq~nKtiqn~kfn 514 (531)
T PF15450_consen 455 REVGAVRQELATLLSSVQLLKEDNP--GRKIAEIQGKLA--TNQIMKLENSIQTNKTIQNLKFN 514 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCh--hhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcccc
Confidence 3444455555554444443333222 235666677766 77888999999999999888875
No 167
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=91.46 E-value=6.7 Score=45.79 Aligned_cols=118 Identities=15% Similarity=0.283 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001773 734 EFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLA----EVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELE 809 (1015)
Q Consensus 734 eleqLEsEkeelE~eLee~~eklEel~~qLqelE~~Le----ELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLe 809 (1015)
.+++|+.-...+...+..+...+..+...+...-.+|. -|..|++.+-..+..+..++....++|+.++...+++.
T Consensus 221 hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t 300 (359)
T PF10498_consen 221 HLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERT 300 (359)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 45556555555555555555555555544444333333 23344455555555555566666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHHhhh
Q 001773 810 AEVNLLRAKIESLENELQDEKMSHH------NAMAKCKELEEQLQRNE 851 (1015)
Q Consensus 810 aEl~eLqeKVesLE~ELe~ek~~~e------EleaK~keLEeQLe~~~ 851 (1015)
.++.++..+++..+.+++..-..+. .+..-+.+|+.+|..+.
T Consensus 301 ~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMd 348 (359)
T PF10498_consen 301 RELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMD 348 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 6666666666666666666554444 44555555666555443
No 168
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=91.43 E-value=20 Score=43.63 Aligned_cols=74 Identities=22% Similarity=0.342 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001773 810 AEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCSSEADENKIKQDRDLAAAAERLAECQETILLLG 889 (1015)
Q Consensus 810 aEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~~~~~~lk~q~~kdLKikqEkEIaaAeeKLAEcQeTI~sLE 889 (1015)
.+...|..++...+.+.+.....+.+...+|..|+++|+.. +...|.+|....+-++.+.+++..-.
T Consensus 441 ~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TT-------------r~NYE~QLs~MSEHLasmNeqL~~Q~ 507 (518)
T PF10212_consen 441 AECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETT-------------RRNYEEQLSMMSEHLASMNEQLAKQR 507 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444422 34467788888888888888888888
Q ss_pred HHHHhcc
Q 001773 890 KQLKSLR 896 (1015)
Q Consensus 890 KQLKsLa 896 (1015)
.+|..|+
T Consensus 508 eeI~~LK 514 (518)
T PF10212_consen 508 EEIQTLK 514 (518)
T ss_pred HHHHHHh
Confidence 8887776
No 169
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.41 E-value=5.5 Score=39.69 Aligned_cols=89 Identities=22% Similarity=0.289 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001773 756 LEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYR---SLETHAQELEAEVNLLRAKIESLENELQDEKMS 832 (1015)
Q Consensus 756 lEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~e---dLesrL~eLeaEl~eLqeKVesLE~ELe~ek~~ 832 (1015)
++.+.++|+..+..+.-++.++..+......+..+|-.+....+ ....++..++.++..++.+...+=.=+..+...
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~ 97 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEE 97 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 34445555555555555555555555544444445544433332 222333334444444444444444444444444
Q ss_pred hHHHHHHHHHHH
Q 001773 833 HHNAMAKCKELE 844 (1015)
Q Consensus 833 ~eEleaK~keLE 844 (1015)
.+++...+.+++
T Consensus 98 veEL~~Dv~DlK 109 (120)
T PF12325_consen 98 VEELRADVQDLK 109 (120)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 170
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=91.36 E-value=14 Score=44.32 Aligned_cols=27 Identities=11% Similarity=0.322 Sum_probs=16.0
Q ss_pred hHHHHHhhhhHHHHHHHHHHHhhhHHH
Q 001773 63 TAEDRAAHLDGALKECMRQIRNLKEEH 89 (1015)
Q Consensus 63 ~le~rv~hLd~aLKec~~qlr~~reeq 89 (1015)
-++.++..+...|.+...+|+..|.+.
T Consensus 165 fl~~ql~~~~~~L~~ae~~l~~f~~~~ 191 (498)
T TIGR03007 165 FIDEQIKTYEKKLEAAENRLKAFKQEN 191 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 355566666666666666666665443
No 171
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.19 E-value=18 Score=43.93 Aligned_cols=172 Identities=18% Similarity=0.148 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHhHHHH-------H
Q 001773 737 ELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQ-------KSNSLAETQLKCMAESYRSL-------E 802 (1015)
Q Consensus 737 qLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLq-------eS~selE~qLk~~~e~~edL-------e 802 (1015)
+-++-+.+....-+.+..+|-.++..|+.++..+...+.+.+.+. ++++..|.+-..+...+++. =
T Consensus 90 ~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~Rll 169 (772)
T KOG0999|consen 90 REESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLL 169 (772)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455555555555555554444444444333 33333444433343333333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhHHHHHHHHHHHHHHHhhhhhhcccchhhhhhhhhHHHHHHHHHHHH
Q 001773 803 THAQELEAEVNLLRAKIESLEN---ELQDEKMSHHNAMAKCKELEEQLQRNENCAVCSSEADENKIKQDRDLAAAAERLA 879 (1015)
Q Consensus 803 srL~eLeaEl~eLqeKVesLE~---ELe~ek~~~eEleaK~keLEeQLe~~~~~~lk~q~~kdLKikqEkEIaaAeeKLA 879 (1015)
+.|.+++-+...|+..|+.|+. |++.++..+..++..+.-|..+++.. ..++...++++..|-.-+.
T Consensus 170 seYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~----------~~Lk~IAekQlEEALeTlq 239 (772)
T KOG0999|consen 170 SEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEA----------IRLKEIAEKQLEEALETLQ 239 (772)
T ss_pred HHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Confidence 4455566666667777776653 34433333333333333333333322 2235556777888888888
Q ss_pred HHHHHHHHHHHHHHhccCCCcc-cCCCCccccccC-CCCCCCC
Q 001773 880 ECQETILLLGKQLKSLRPQSEV-IGSPYSERSQKG-EFLPGEP 920 (1015)
Q Consensus 880 EcQeTI~sLEKQLKsLa~~~e~-~~~~~~~~~~~~-~~~~~~~ 920 (1015)
.-|++-..|.+.|.......+. -.+...- ..+ .|.+|.+
T Consensus 240 ~EReqk~alkkEL~q~~n~e~~~~~n~l~~--sldgk~~eDga 280 (772)
T KOG0999|consen 240 QEREQKNALKKELSQYRNAEDISSLNHLLF--SLDGKFGEDGA 280 (772)
T ss_pred hHHHHHHHHHHHHHHhcchhhhhhhhhhhe--ecccccccccC
Confidence 8888889999999888776552 1121111 133 5777766
No 172
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=91.12 E-value=30 Score=42.56 Aligned_cols=37 Identities=14% Similarity=0.119 Sum_probs=19.0
Q ss_pred hhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHH
Q 001773 38 SGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGA 74 (1015)
Q Consensus 38 ~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~a 74 (1015)
.-|.++..+...++..-.....+..-++-++..|+.|
T Consensus 168 ~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~ 204 (563)
T TIGR00634 168 QAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEA 204 (563)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhC
Confidence 3455555555555555555555555555555555443
No 173
>PF13166 AAA_13: AAA domain
Probab=91.09 E-value=33 Score=42.97 Aligned_cols=58 Identities=19% Similarity=0.268 Sum_probs=30.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHHHHHhHHHHhhhcCC
Q 001773 190 EEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKMEVESLGRD 250 (1015)
Q Consensus 190 EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa~a~mk~ev~~~~~~ 250 (1015)
.++....+.+..+..........+..++.++..++.-+...- .+...+-.++..+|..
T Consensus 417 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~---~~~~~iN~~L~~~g~~ 474 (712)
T PF13166_consen 417 KEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTE---PAADRINEELKRLGFS 474 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHhCCC
Confidence 333444444445555555555555555555555554444322 2446777778878744
No 174
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.96 E-value=57 Score=41.71 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=25.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHh
Q 001773 301 KMLKEALAKRNSELQASRNLCAKTASKLQSLEAQMQ 336 (1015)
Q Consensus 301 k~lke~l~~~~~elq~sr~~~a~t~~kl~~~e~q~~ 336 (1015)
+..+.-|..-+.++++-.|..++-.-|++.+++|..
T Consensus 851 ~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~qad 886 (970)
T KOG0946|consen 851 KLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQAD 886 (970)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHhhc
Confidence 333344444456677888888999999999998766
No 175
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=90.93 E-value=39 Score=39.78 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=16.0
Q ss_pred HHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhh
Q 001773 48 LALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNL 85 (1015)
Q Consensus 48 ~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qlr~~ 85 (1015)
..-...|+.+-+..-..+.+...+---+-...+.|+.+
T Consensus 105 ~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~ 142 (499)
T COG4372 105 EAARSELQKARQEREAVRQELAAARQNLAKAQQELARL 142 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444454444444444444433333333333333333
No 176
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=90.91 E-value=55 Score=41.46 Aligned_cols=135 Identities=18% Similarity=0.180 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 111 FEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNE 190 (1015)
Q Consensus 111 LEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~E 190 (1015)
+......+..++..+.+....+...+..+.+....++.....+..++..+...++...+....+...+..++.+++....
T Consensus 501 L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~ 580 (698)
T KOG0978|consen 501 LREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEA 580 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555556666666666666666666666666777777777777777777777777777787888888888777777
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---ccCCChHHHHHhHHHHh
Q 001773 191 EKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVR---KKLPGPAALAQMKMEVE 245 (1015)
Q Consensus 191 Ele~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~r---k~lpgpaa~a~mk~ev~ 245 (1015)
.+..++.....+...+.-...+...+++++.+++.-+. +.--|+-|...|..|+.
T Consensus 581 ~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~~~s~d~~L~EElk 638 (698)
T KOG0978|consen 581 KLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEESGASADEVLAEELK 638 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 88888777777777777777788888888877766543 33334445555555554
No 177
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=90.90 E-value=13 Score=36.48 Aligned_cols=39 Identities=15% Similarity=0.253 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 001773 797 SYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHN 835 (1015)
Q Consensus 797 ~~edLesrL~eLeaEl~eLqeKVesLE~ELe~ek~~~eE 835 (1015)
..+.|.+.+..++.+.....+++..|+..+......+..
T Consensus 38 qkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 38 QKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444443
No 178
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=90.69 E-value=23 Score=37.00 Aligned_cols=45 Identities=22% Similarity=0.402 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 733 EEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQL 777 (1015)
Q Consensus 733 EeleqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQL 777 (1015)
.+++.++.++..+...+...-.+...+....+.+...|.+....+
T Consensus 27 ~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f 71 (159)
T PF05384_consen 27 QEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNF 71 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345555555555555555555555555555555555555544444
No 179
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=90.36 E-value=48 Score=39.92 Aligned_cols=128 Identities=15% Similarity=0.211 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHH
Q 001773 110 EFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAK---YELHIVSKELE 186 (1015)
Q Consensus 110 ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK---~EL~~LqeELE 186 (1015)
.++.+-..+......+.+-..++....+++-..+..+..+++..+.++..|++++..+...+..-. .++.....+.+
T Consensus 299 ~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere 378 (622)
T COG5185 299 TLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQERE 378 (622)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 333344444444444444444555555555555555555555555555555555554444332210 11112222233
Q ss_pred HHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHHH
Q 001773 187 IRNEEKNMSMRSAEA----ANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAAL 237 (1015)
Q Consensus 187 il~EEle~s~qsaea----l~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa~ 237 (1015)
.+..+++...-..+. ...+.++.+..+..++..++.+..|...-.-.||||
T Consensus 379 ~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~~~~~~i 433 (622)
T COG5185 379 KLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQI 433 (622)
T ss_pred HHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 333333333222222 223445556666677777777777776655556665
No 180
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=90.23 E-value=15 Score=43.86 Aligned_cols=33 Identities=24% Similarity=0.168 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcccCCCCc
Q 001773 875 AERLAECQETILLLGKQLKSLRPQSEVIGSPYS 907 (1015)
Q Consensus 875 eeKLAEcQeTI~sLEKQLKsLa~~~e~~~~~~~ 907 (1015)
-+.--+.|.-+.+|++-+..+....+-++-+++
T Consensus 399 ~~~~leaq~~~~slek~~~~~~sl~~~i~~~~~ 431 (622)
T COG5185 399 KSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRS 431 (622)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 344456777788888888777766665555444
No 181
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=89.96 E-value=24 Score=35.82 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhH
Q 001773 809 EAEVNLLRAKIESLENELQDEKMSHH 834 (1015)
Q Consensus 809 eaEl~eLqeKVesLE~ELe~ek~~~e 834 (1015)
..++..+...+...+.++...+..+.
T Consensus 100 ~~~~~~~~~~~k~~kee~~klk~~~~ 125 (151)
T PF11559_consen 100 QKQLKSLEAKLKQEKEELQKLKNQLQ 125 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344443333333
No 182
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=89.90 E-value=31 Score=36.99 Aligned_cols=76 Identities=24% Similarity=0.244 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 71 LDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKI 146 (1015)
Q Consensus 71 Ld~aLKec~~qlr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL 146 (1015)
+..|-++..+=+..++.+-+....++......+|.+++.+++..+..-..++......+..-...|+.....+...
T Consensus 29 ~~~A~~~A~~i~~~A~~eAe~~~ke~~~eakee~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~ 104 (201)
T PF12072_consen 29 LEQAEKEAEQILEEAEREAEAIKKEAELEAKEEAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKR 104 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666677777777888888888899999998888887777766666655555555554444443333
No 183
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=89.74 E-value=52 Score=39.35 Aligned_cols=36 Identities=22% Similarity=0.160 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001773 182 SKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLE 217 (1015)
Q Consensus 182 qeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLE 217 (1015)
++-+..++.++...++..+++..+...+.+.|+.++
T Consensus 209 kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 209 KKTLAQLNSELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444
No 184
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=89.73 E-value=4.9 Score=49.25 Aligned_cols=97 Identities=21% Similarity=0.278 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 744 NLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLE 823 (1015)
Q Consensus 744 elE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLeaEl~eLqeKVesLE 823 (1015)
....++..+..+++.++.+.+.++..+.+++..+..|+. ++..+...... -.....++..+..+|..|+
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~-------~l~~~~r~~~~----~~~~~rei~~~~~~I~~L~ 487 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSELKRELEELKREIEKLES-------ELERFRREVRD----KVRKDREIRARDRRIERLE 487 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH----HHhhhHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444433 55444433321 0113467777888888899
Q ss_pred HHHHHHHhhhHHHHHHHHHHH--HHHHhhh
Q 001773 824 NELQDEKMSHHNAMAKCKELE--EQLQRNE 851 (1015)
Q Consensus 824 ~ELe~ek~~~eEleaK~keLE--eQLe~~~ 851 (1015)
.+|...+...+.|+.++..|. ..|+.-|
T Consensus 488 ~~L~e~~~~ve~L~~~l~~l~k~~~lE~sG 517 (652)
T COG2433 488 KELEEKKKRVEELERKLAELRKMRKLELSG 517 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Confidence 998888888888888888777 4444333
No 185
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=89.72 E-value=12 Score=37.72 Aligned_cols=79 Identities=20% Similarity=0.232 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001773 740 LEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAK 818 (1015)
Q Consensus 740 sEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLeaEl~eLqeK 818 (1015)
-.++.+-++|++++.--..+...|.++.....-|+.+|+++...+..+++=+..-.+.+..+..++.+.+.+..+...-
T Consensus 6 P~iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnkKqe~l~iLqlhcqeke~eaqrq~~~ 84 (134)
T PF15233_consen 6 PQIEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILNKKQETLRILQLHCQEKESEAQRQQTL 84 (134)
T ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3566777888888888888888999999999999999999999988998888888888888898888888777766544
No 186
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.54 E-value=39 Score=43.10 Aligned_cols=160 Identities=19% Similarity=0.168 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001773 735 FEELKLEKDNLATD-LARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVN 813 (1015)
Q Consensus 735 leqLEsEkeelE~e-Lee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLeaEl~ 813 (1015)
++=+-.-.+.+..+ +.....-..+++.++.-+.......-.+|..+++.+..+.+.-+.+.++|+++..+-..+..++.
T Consensus 538 l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~ 617 (717)
T PF10168_consen 538 LELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVD 617 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555444 23333335556666666666666666666777777777777777777778887777777777777
Q ss_pred HHHHHHHH-----------HHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhc--cc--chhhhhhhhhHHHHHHHHHHH
Q 001773 814 LLRAKIES-----------LENELQDEKMSHHNAMAKCKELEEQLQRNENCAV--CS--SEADENKIKQDRDLAAAAERL 878 (1015)
Q Consensus 814 eLqeKVes-----------LE~ELe~ek~~~eEleaK~keLEeQLe~~~~~~l--k~--q~~kdLKikqEkEIaaAeeKL 878 (1015)
.+...+.. ..+|++..+..+..+.+.+.+++.++..-..... .. .....+...|.+. +.+-|
T Consensus 618 ~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~---I~~iL 694 (717)
T PF10168_consen 618 RVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRT---IKEIL 694 (717)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHH---HHHHH
Confidence 77665543 3444555555555566666666555554332101 00 1111222233333 33445
Q ss_pred HHHHHHHHHHHHHHHhccC
Q 001773 879 AECQETILLLGKQLKSLRP 897 (1015)
Q Consensus 879 AEcQeTI~sLEKQLKsLa~ 897 (1015)
.+.-+.|..+=+++|.+..
T Consensus 695 ~~~~~~I~~~v~~ik~i~~ 713 (717)
T PF10168_consen 695 KQQGEEIDELVKQIKNIKK 713 (717)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555556666666665543
No 187
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=89.48 E-value=36 Score=37.10 Aligned_cols=31 Identities=13% Similarity=0.170 Sum_probs=13.9
Q ss_pred HHHHHHHHhHHHHhhhhhhHHHHHhhhhHHH
Q 001773 45 AEALALKNHLESVTLSKLTAEDRAAHLDGAL 75 (1015)
Q Consensus 45 ~e~~~lK~~Le~~~~q~~~le~rv~hLd~aL 75 (1015)
.|...+++..+.....+..+..=|..++.++
T Consensus 23 ~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i 53 (207)
T PF05010_consen 23 EEEQELKKKYEELHKENQEMRKIMEEYEKTI 53 (207)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4455555555554444443333333333333
No 188
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=89.44 E-value=35 Score=40.46 Aligned_cols=90 Identities=21% Similarity=0.168 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001773 731 SLEEFEELKLEKDNLATDLARCTE-NLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELE 809 (1015)
Q Consensus 731 s~EeleqLEsEkeelE~eLee~~e-klEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLe 809 (1015)
+...+.+|+.++-.++..++..++ ....+...+++++..----+.-|+.|....-++++-++. +.+
T Consensus 134 Lsrkl~qLr~ek~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQ-------------EqE 200 (552)
T KOG2129|consen 134 LSRKLKQLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQ-------------EQE 200 (552)
T ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHH-------------HHH
Confidence 345677888887777777766552 233444445554433222222234443333333333332 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 001773 810 AEVNLLRAKIESLENELQDEKMSH 833 (1015)
Q Consensus 810 aEl~eLqeKVesLE~ELe~ek~~~ 833 (1015)
+=++.|-.+++.|+.|-.++...+
T Consensus 201 alvN~LwKrmdkLe~ekr~Lq~Kl 224 (552)
T KOG2129|consen 201 ALVNSLWKRMDKLEQEKRYLQKKL 224 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556677777777777777666544
No 189
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.36 E-value=5.2 Score=43.25 Aligned_cols=22 Identities=14% Similarity=0.178 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001773 732 LEEFEELKLEKDNLATDLARCT 753 (1015)
Q Consensus 732 ~EeleqLEsEkeelE~eLee~~ 753 (1015)
.+.+.+++.++..++.+++.+.
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555444
No 190
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.23 E-value=15 Score=43.79 Aligned_cols=51 Identities=20% Similarity=0.204 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001773 798 YRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQ 848 (1015)
Q Consensus 798 ~edLesrL~eLeaEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe 848 (1015)
.+.++.++.++...++..++.+..++++-..+.........++++++++..
T Consensus 377 kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~ 427 (493)
T KOG0804|consen 377 KKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREK 427 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555444444444444444444444444433
No 191
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=89.22 E-value=16 Score=47.59 Aligned_cols=71 Identities=20% Similarity=0.223 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001773 762 QLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMS 832 (1015)
Q Consensus 762 qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLeaEl~eLqeKVesLE~ELe~ek~~ 832 (1015)
..+....+|++++.+++.+...+..+.+.+..+...+..+..++..++..+......+..++.++...+..
T Consensus 442 e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 442 EKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555554444444444444444444444444444444444444444444444444433
No 192
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=89.02 E-value=16 Score=43.04 Aligned_cols=81 Identities=16% Similarity=0.115 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001773 103 QWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVS 182 (1015)
Q Consensus 103 e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~Lq 182 (1015)
++++....+.+++..+.++...+++.+...+..|..++++...+.++.-+.+..-+-+...+...+...-++..+|..+.
T Consensus 24 q~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~~ 103 (459)
T KOG0288|consen 24 QCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIRELR 103 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444444444444444444333333333444444444344444444443
Q ss_pred H
Q 001773 183 K 183 (1015)
Q Consensus 183 e 183 (1015)
+
T Consensus 104 ~ 104 (459)
T KOG0288|consen 104 E 104 (459)
T ss_pred H
Confidence 3
No 193
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=88.89 E-value=22 Score=44.98 Aligned_cols=116 Identities=16% Similarity=0.174 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001773 104 WDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSK 183 (1015)
Q Consensus 104 ~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~Lqe 183 (1015)
+.++..-|++++.+..+.++-++..+..|-+-++...++...+...+...+.++. +..+..+-+..+++.|+...-.
T Consensus 432 LqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~---~~kq~~d~e~~rik~ev~eal~ 508 (861)
T PF15254_consen 432 LQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELL---ENKQQFDIETTRIKIEVEEALV 508 (861)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999999988888888887777766655554443 3444555666666666665555
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 001773 184 ELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRK 229 (1015)
Q Consensus 184 ELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk 229 (1015)
..+.+.-. +++..++-.-+.-.|.+-.+|+.||+-|.|-
T Consensus 509 ~~k~~q~k-------Le~sekEN~iL~itlrQrDaEi~RL~eLtR~ 547 (861)
T PF15254_consen 509 NVKSLQFK-------LEASEKENQILGITLRQRDAEIERLRELTRT 547 (861)
T ss_pred HHHHHhhh-------HHHHHhhhhHhhhHHHHHHHHHHHHHHHHHH
Confidence 54444444 4444444444455566677777777777764
No 194
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=88.89 E-value=73 Score=39.95 Aligned_cols=47 Identities=17% Similarity=0.262 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHHHHHhHHHHhhhcC
Q 001773 202 ANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKMEVESLGR 249 (1015)
Q Consensus 202 l~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa~a~mk~ev~~~~~ 249 (1015)
...+...+..++..++.++..+...++. .|++..+.++..+++.+.+
T Consensus 389 ~~~~~~~~~~~~~~~e~el~~l~~~l~~-~~~~e~i~~l~e~l~~l~~ 435 (650)
T TIGR03185 389 LQDAKSQLLKELRELEEELAEVDKKIST-IPSEEQIAQLLEELGEAQN 435 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHH
Confidence 4566777778888888888888777764 4777888888877776543
No 195
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=88.88 E-value=96 Score=41.27 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHHHHHhHHHHhhhc
Q 001773 198 SAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKMEVESLG 248 (1015)
Q Consensus 198 saeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa~a~mk~ev~~~~ 248 (1015)
.+..+...+......+..+...+..+.....+.----.+++....+.+.|+
T Consensus 830 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (1047)
T PRK10246 830 ELAQLAQQLRENTTRQGEIRQQLKQDADNRQQQQALMQQIAQATQQVEDWG 880 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444443333333322211233444444444443
No 196
>PRK00106 hypothetical protein; Provisional
Probab=88.87 E-value=60 Score=40.05 Aligned_cols=11 Identities=36% Similarity=0.353 Sum_probs=4.4
Q ss_pred hhHHHHHHHHH
Q 001773 102 KQWDKIRLEFE 112 (1015)
Q Consensus 102 ~e~e~~~~ELE 112 (1015)
+++...+.+++
T Consensus 79 eEi~~~R~ElE 89 (535)
T PRK00106 79 EEARKYREEIE 89 (535)
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 197
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=88.77 E-value=0.13 Score=64.54 Aligned_cols=27 Identities=37% Similarity=0.527 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHHh
Q 001773 283 QKENEFLTERLLAMEEETKMLKEALAK 309 (1015)
Q Consensus 283 ~~~~~~l~~rl~~~eee~k~lke~l~~ 309 (1015)
+.++-.|++++-.+.-+.+.|+.++..
T Consensus 349 q~~~~~L~ek~g~~~~~~~~l~~~~~~ 375 (722)
T PF05557_consen 349 QQENASLTEKLGSLQSELRELEEEIQE 375 (722)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 444555666666666666655554433
No 198
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=88.72 E-value=10 Score=38.14 Aligned_cols=85 Identities=14% Similarity=0.228 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001773 91 QKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCERE 170 (1015)
Q Consensus 91 qki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE 170 (1015)
+-+.+|+..-+++.+..-..+......+..+++.+...++...+.....++++.++...++++..++.-.+.....++..
T Consensus 39 r~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~k 118 (126)
T PF07889_consen 39 RSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGK 118 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777778888887777777777777777777777777777777777777777777777777777777666666666
Q ss_pred HHHHH
Q 001773 171 INSAK 175 (1015)
Q Consensus 171 ~e~LK 175 (1015)
+.+++
T Consensus 119 i~~ie 123 (126)
T PF07889_consen 119 IDEIE 123 (126)
T ss_pred HHHHh
Confidence 65554
No 199
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=88.63 E-value=0.13 Score=64.34 Aligned_cols=68 Identities=19% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001773 160 LKGNIEQCEREINSAKYELHIV-SKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLV 227 (1015)
Q Consensus 160 LkERIenlEKE~e~LK~EL~~L-qeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~ 227 (1015)
+.+++..++.++..|+..+... ...+..+...++...+....+..+.....+++..++.++..+..-+
T Consensus 457 l~erl~rLe~ENk~Lk~~~e~~~~e~~~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq~~l 525 (713)
T PF05622_consen 457 LRERLLRLEHENKRLKEKQEESEEEKLEELQSQLEDANRRKEKLEEENREANEKILELQSQLEELQKSL 525 (713)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777776555444 2334445555555555555666666666666666666665554433
No 200
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.38 E-value=33 Score=41.02 Aligned_cols=29 Identities=24% Similarity=0.218 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001773 866 KQDRDLAAAAERLAECQETILLLGKQLKS 894 (1015)
Q Consensus 866 kqEkEIaaAeeKLAEcQeTI~sLEKQLKs 894 (1015)
+++.+|....+..-+.|+++++++.+|.+
T Consensus 400 Kq~~DI~Kil~etreLqkq~ns~se~L~R 428 (521)
T KOG1937|consen 400 KQEQDIVKILEETRELQKQENSESEALNR 428 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45668888888888888888888888864
No 201
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=88.06 E-value=73 Score=38.94 Aligned_cols=242 Identities=17% Similarity=0.162 Sum_probs=126.9
Q ss_pred HHHhhhhHH----HHHHHHHHHHhHHHHhhh----hhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHH
Q 001773 34 EEAVSGWEK----AEAEALALKNHLESVTLS----KLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWD 105 (1015)
Q Consensus 34 eeav~gwek----ae~e~~~lK~~Le~~~~q----~~~le~rv~hLd~aLKec~~qlr~~reeqeqki~~~~~~~~~e~e 105 (1015)
||==.-|.| .|..+.+|+.+.+..... ..-+-++.-.||.|+---...++..+. +|--++....+-|+
T Consensus 225 eElE~rW~~lq~l~Ee~l~al~gq~ev~~~~~~~E~~~l~eq~~~ld~AV~~Ltk~v~~~q~----sL~kvl~aE~kaR~ 300 (531)
T PF15450_consen 225 EELESRWQKLQELTEERLRALQGQQEVGLGGIQSEESKLLEQCRKLDEAVAQLTKFVQQNQK----SLNKVLNAEQKARD 300 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHhhHHHHHH
Confidence 444456776 578889999998864433 344667777777776555544444433 66667777777887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001773 106 KIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKEL 185 (1015)
Q Consensus 106 ~~~~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeEL 185 (1015)
.--.-++.++.++...+... +.++..+ -.-......+.+.++++..+-++..+..|...+..+...+
T Consensus 301 ~k~~~e~sk~eeL~~~L~~~---lea~q~a----------gkla~Qe~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~ 367 (531)
T PF15450_consen 301 AKEKLEESKAEELATKLQEN---LEAMQLA----------GKLAQQETQSELDLLQEKSQILEDSVAELMRQLKDLDDHI 367 (531)
T ss_pred HHhHHHHhhHHHHHHHHHHH---HHHHHHh----------hhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777776655443 1121111 1111222345566666666666666666666666666665
Q ss_pred HHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHHHHHhHHHHhhhcCCcCCccccCCCCCCC
Q 001773 186 EIRNEEKNMSMRSAEA-ANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKMEVESLGRDYGDSRLKRSPVKPT 264 (1015)
Q Consensus 186 Eil~EEle~s~qsaea-l~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa~a~mk~ev~~~~~~~~~~r~rr~~~~~~ 264 (1015)
-.+.-.+..-.+.+.. +..-..+....+.+.-..+..|+.-+-+.+ --++.=||+|+++..+...+--..++
T Consensus 368 ~aLs~rld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l------~~v~eKVd~LpqqI~~vs~Kc~~~Ks- 440 (531)
T PF15450_consen 368 LALSWRLDLQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEKHL------KEVQEKVDSLPQQIEEVSDKCDLHKS- 440 (531)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhHHHHHHHHHHHHHHh-
Confidence 5555554444333322 111112223333333344444444443332 34555566666544332111000000
Q ss_pred CCCCCCCcccchhhhHhhhhhhHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHH
Q 001773 265 SPHLSPVSEFSLDNVQKFQKENEFLTERLLAMEEETKMLKEALAKRNSELQASR 318 (1015)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~eee~k~lke~l~~~~~elq~sr 318 (1015)
-.+.-.| .--.+-+-+..++|+.|+...+-+|..+
T Consensus 441 ------d~d~kId-------------tE~k~R~~eV~~vRqELa~lLssvQ~~~ 475 (531)
T PF15450_consen 441 ------DSDTKID-------------TEGKAREREVGAVRQELATLLSSVQLLK 475 (531)
T ss_pred ------hhhhhcc-------------HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0000000 1112334566788899988888888654
No 202
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=87.87 E-value=1.1e+02 Score=40.54 Aligned_cols=174 Identities=15% Similarity=0.204 Sum_probs=101.0
Q ss_pred hhhHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHhhhhhhhcCCCCCcCCCCCccccccccccchhhhccCCCCCC
Q 001773 615 NGFSQKIEEFYVSFNKVIDSNTYLVDFVFALSNVLAKASELRINVMGYKDTEIEPNSPDCIDKVALPENKVIKKDTSGER 694 (1015)
Q Consensus 615 ~~l~~~~~~f~~~~~~~l~~~~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~e~e~~~~~~~dk~~~~e~k~~~~~~~~~~ 694 (1015)
.++..+|+.+..+.+.+-..-+.+++=|+. +.|..+-|.+-.|.+.+. .....+|...++++.....--.
T Consensus 728 ~~i~r~l~~~e~~~~~L~~~~n~ved~if~-----~f~~~igv~ir~Yee~~~---~~~~a~k~~ef~~q~~~l~~~l-- 797 (1141)
T KOG0018|consen 728 SEIKRKLQNREGEMKELEERMNKVEDRIFK-----GFCRRIGVRIREYEEREL---QQEFAKKRLEFENQKAKLENQL-- 797 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhhhcCeeeehHHHHHH---HHHHHHHHHHHHHHHHHHhhhh--
Confidence 355566666666666655554444442221 456777777666665554 2223455555555441111111
Q ss_pred CCCCccCCCCCCCCCCCCCCCcccccccchhhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 695 YPNGCAHISNPTSDPEVPDDGSIVAAYESETTACKFSLEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVK 774 (1015)
Q Consensus 695 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~EeleqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELe 774 (1015)
+| .- ++-.-..|+.++..++.++.++..+...-+.....+.++ . +++
T Consensus 798 ---------------~f----------e~----~~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~---~~e 844 (1141)
T KOG0018|consen 798 ---------------DF----------EK----QKDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-E---ELE 844 (1141)
T ss_pred ---------------hh----------ee----cccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-H---HHH
Confidence 11 11 011234677777777777777777766666666665555 2 222
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 001773 775 AQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHH 834 (1015)
Q Consensus 775 sQLesLqeS~selE~qLk~~~e~~edLesrL~eLeaEl~eLqeKVesLE~ELe~ek~~~e 834 (1015)
. +-+..-..++.++.........+-..++.+..++..+..+++.++.|.+.+-..|.
T Consensus 845 ~---k~k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~lL~~ck 901 (1141)
T KOG0018|consen 845 K---KNKSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERKESERHNLLSKCK 901 (1141)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhh
Confidence 2 11333445677777777778888888888888888888888888888777665543
No 203
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=87.67 E-value=58 Score=37.28 Aligned_cols=44 Identities=20% Similarity=0.259 Sum_probs=20.7
Q ss_pred HHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhH
Q 001773 44 EAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKE 87 (1015)
Q Consensus 44 e~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qlr~~re 87 (1015)
.+++.++..+-++...++..+-+++..|=.--.+.-.++..+|+
T Consensus 33 ~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~ 76 (294)
T COG1340 33 RKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKE 76 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555444433333333333333
No 204
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=87.52 E-value=32 Score=36.88 Aligned_cols=107 Identities=21% Similarity=0.244 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 746 ATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENE 825 (1015)
Q Consensus 746 E~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLeaEl~eLqeKVesLE~E 825 (1015)
+.-|.--+.-++.+..++++++.-+.+....|...+........-.......+..|..-+...+..+.....-......+
T Consensus 59 eAaL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~e 138 (188)
T PF05335_consen 59 EAALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQE 138 (188)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555667777777777777777777777777777777777777777777777778888888888888888899999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHhhhh
Q 001773 826 LQDEKMSHHNAMAKCKELEEQLQRNEN 852 (1015)
Q Consensus 826 Le~ek~~~eEleaK~keLEeQLe~~~~ 852 (1015)
+......+.....|+..|..+|.....
T Consensus 139 l~eK~qLLeaAk~Rve~L~~QL~~Ar~ 165 (188)
T PF05335_consen 139 LAEKTQLLEAAKRRVEELQRQLQAARA 165 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999886554
No 205
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=87.33 E-value=31 Score=35.03 Aligned_cols=54 Identities=19% Similarity=0.267 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001773 762 QLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLL 815 (1015)
Q Consensus 762 qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLeaEl~eL 815 (1015)
.+..+...+..|+.++..++..+..++.....+...++.+...+.....++..+
T Consensus 67 d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~kl 120 (151)
T PF11559_consen 67 DIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKL 120 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333333333
No 206
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=87.30 E-value=55 Score=38.58 Aligned_cols=27 Identities=7% Similarity=0.207 Sum_probs=17.3
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 729 KFSLEEFEELKLEKDNLATDLARCTEN 755 (1015)
Q Consensus 729 ~~s~EeleqLEsEkeelE~eLee~~ek 755 (1015)
.|..+++.+++.++...+..+..++.+
T Consensus 174 ~fl~~ql~~~~~~l~~ae~~l~~fr~~ 200 (444)
T TIGR03017 174 LWFVQQIAALREDLARAQSKLSAYQQE 200 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566677777777777766665543
No 207
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=87.27 E-value=34 Score=43.37 Aligned_cols=34 Identities=15% Similarity=0.126 Sum_probs=17.3
Q ss_pred HHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHH
Q 001773 55 ESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEE 88 (1015)
Q Consensus 55 e~~~~q~~~le~rv~hLd~aLKec~~qlr~~ree 88 (1015)
+.+.....-+++|+..+..-|.+..++|...|.+
T Consensus 190 ~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~ 223 (754)
T TIGR01005 190 ESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQ 223 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555555555555555543
No 208
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=87.06 E-value=75 Score=37.97 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 732 LEEFEELKLEKDNLATDLARCTENLEMT 759 (1015)
Q Consensus 732 ~EeleqLEsEkeelE~eLee~~eklEel 759 (1015)
+|.+..++..+.+++.+|+.++++-..-
T Consensus 251 le~Lq~aEqsl~dlQk~Lekar~e~rnv 278 (575)
T KOG4403|consen 251 LEGLQRAEQSLEDLQKRLEKAREEQRNV 278 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence 3455556666666666666666554333
No 209
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=87.01 E-value=83 Score=38.41 Aligned_cols=90 Identities=11% Similarity=0.027 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001773 131 TLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGV 210 (1015)
Q Consensus 131 aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~ 210 (1015)
-+.+++...+..+..+.++++....+...+++.+..+...+.+++..+..+.-+.+.+.+-+......-+.+..++.|.+
T Consensus 202 ~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~Ele 281 (596)
T KOG4360|consen 202 DCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELE 281 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34455666666666677777777777777777777777777777777766666655555555555555555555555555
Q ss_pred HHHHHHHHHH
Q 001773 211 KKIAKLEAEC 220 (1015)
Q Consensus 211 KKLaKLEaEc 220 (1015)
.+.++..+.+
T Consensus 282 DkyAE~m~~~ 291 (596)
T KOG4360|consen 282 DKYAECMQML 291 (596)
T ss_pred HHHHHHHHHH
Confidence 5554444443
No 210
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=86.90 E-value=9.3 Score=41.71 Aligned_cols=72 Identities=21% Similarity=0.275 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 001773 765 ETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNA 836 (1015)
Q Consensus 765 elE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLeaEl~eLqeKVesLE~ELe~ek~~~eEl 836 (1015)
++.....+++..++.+++.+.++-.++..+...|+..+.++..++.+..+|.++...|..+..+++....++
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence 444444555555555555444444455555555555555666666666665555555555555444444433
No 211
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=86.84 E-value=27 Score=38.49 Aligned_cols=30 Identities=13% Similarity=0.201 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Q 001773 821 SLENELQDEKMSHHNAMAKCKELEEQLQRN 850 (1015)
Q Consensus 821 sLE~ELe~ek~~~eEleaK~keLEeQLe~~ 850 (1015)
..+.+....+..+..+...+..|.+++.++
T Consensus 71 qa~~er~~~~~~i~r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 71 QAESERNKRQEKIQRLYEEYKPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444444443
No 212
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=86.81 E-value=26 Score=36.09 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 001773 813 NLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQR 849 (1015)
Q Consensus 813 ~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~ 849 (1015)
..++.++......|..++.-+.....+|..|+..+..
T Consensus 93 ~~~e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~ 129 (146)
T PF08702_consen 93 YILETKIINQPSNIRVLQNILRSNRQKIQRLEQDIDQ 129 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555666666666666666666655553
No 213
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.73 E-value=81 Score=38.97 Aligned_cols=187 Identities=17% Similarity=0.188 Sum_probs=112.2
Q ss_pred hHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHH-----HHHHHHHhhhHHHH-----HHHHHHHHH---HhhhHHH
Q 001773 40 WEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALK-----ECMRQIRNLKEEHE-----QKLQDFVLT---KTKQWDK 106 (1015)
Q Consensus 40 wekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLK-----ec~~qlr~~reeqe-----qki~~~~~~---~~~e~e~ 106 (1015)
.+-|+-++..|+...+-+..-+--|-.|+..||.|-+ +...-+.-.++--+ .|..-.+++ +.-+.-.
T Consensus 334 ~~~~~~~~~~~~Tr~Er~Er~~D~L~rri~~~~~~~~R~~~s~A~~K~~E~K~~~~~~~~~~r~i~~~~~~~~~~~~~s~ 413 (852)
T KOG4787|consen 334 LELAESQVQHLNTKIERLEKTNDHLNKKIVELEADCKRGGVTSAHSKAGEFKLTPEMEKDMSKMIVTISELERKNLELTT 413 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHhhhhhcChHhHhHHHHHHHHHHHHHHhcccHHH
Confidence 4556788899999999999988889999999997643 33333322222111 111111111 1111111
Q ss_pred HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 001773 107 IRLEFEAKIAN----------FEQELLRSAAENATLSRSL-QERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAK 175 (1015)
Q Consensus 107 ~~~ELEaKLaE----------lEkeLeelkaEl~aLeeqL-eelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK 175 (1015)
.+.+|+++..- ...++...++++..+..-+ +.--..+..|...++++.-.-.+|..|+.-..++..+--
T Consensus 414 ~~r~L~~~~~~~~~~~~~~~s~~~Ei~~~QA~M~E~~Dt~~~~dV~~~~sL~~~LeqAsK~CRIL~~RL~K~~R~q~R~~ 493 (852)
T KOG4787|consen 414 QVKQLETKVTPKPNFVVPSGTTTTELRKEQAQMNELKDTVFKSDVQKVISLATKLEQANKQCRILNERLNKLHRKQVRDG 493 (852)
T ss_pred HHHHHhhccccchhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhHHHHHHHhhh
Confidence 22222222110 1334444444444443322 111223345666777777777777777777777555544
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001773 176 YELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGL 226 (1015)
Q Consensus 176 ~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l 226 (1015)
.=-......+..+.+++..+..-.-.+++.+....+.+.+++..|..|+.-
T Consensus 494 ~~~~~d~~kIK~LE~e~R~S~~Ls~~L~~ElE~~~~~~~~~e~~~evL~~~ 544 (852)
T KOG4787|consen 494 EIQYSDELKIKILELEKRLSEKLAIDLVSELEGKIPTIDEIEQCCEVLAAV 544 (852)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHhHHHHHHHHHHHH
Confidence 444455666888888999998888889999999999999999999877654
No 214
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=86.63 E-value=79 Score=37.80 Aligned_cols=163 Identities=17% Similarity=0.153 Sum_probs=74.8
Q ss_pred hhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 59 LSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQE 138 (1015)
Q Consensus 59 ~q~~~le~rv~hLd~aLKec~~qlr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLee 138 (1015)
+.++.|+-|+.-|++-+|+-.=--...-.|.+.|=.++..++-++-.-.+..++.++. .+..++..+...+-.
T Consensus 250 qEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle~Enlqmr~q-------qleeentelRs~~ar 322 (502)
T KOG0982|consen 250 QENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLEKENLQMRDQ-------QLEEENTELRSLIAR 322 (502)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 5566777777777777766443333333344444444544444442222222333333 333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--------
Q 001773 139 RSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGV-------- 210 (1015)
Q Consensus 139 lqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~-------- 210 (1015)
+...+.++.....+...++..+..++.-..+...+.-.-|..-+++.+...+-++.+.+.+..++.......
T Consensus 323 lksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkelehlr~~kl~~a~p~rgrsS 402 (502)
T KOG0982|consen 323 LKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKELEHLRRRKLVLANPVRGRSS 402 (502)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCchh
Confidence 333333444444444444455555554444444444444444444444444444444444444444433333
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 001773 211 KKIAKLEAECQRLRGLVR 228 (1015)
Q Consensus 211 KKLaKLEaEcqrLr~l~r 228 (1015)
.....++.++.+++.=-|
T Consensus 403 aRe~eleqevkrLrq~nr 420 (502)
T KOG0982|consen 403 AREIELEQEVKRLRQPNR 420 (502)
T ss_pred HHHHHHHHHHHHhccccc
Confidence 344556666666554333
No 215
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=86.55 E-value=70 Score=37.12 Aligned_cols=78 Identities=15% Similarity=0.142 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001773 121 ELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRS 198 (1015)
Q Consensus 121 eLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qs 198 (1015)
+-+.++.+++.|..++-..+..+........++++-+.-+.++-..++-..+.+..+..+-+++-..++.|++...+-
T Consensus 100 e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~lay 177 (401)
T PF06785_consen 100 ESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAY 177 (401)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555555555555555555555555555555544444444444444444333
No 216
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=86.46 E-value=80 Score=41.60 Aligned_cols=79 Identities=18% Similarity=0.230 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001773 735 FEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVN 813 (1015)
Q Consensus 735 leqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLeaEl~ 813 (1015)
+.+.+.++..+...+++...+++....++..+.....-....-..+.+.+..++..+......+..++..+.+++..+.
T Consensus 436 y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~ 514 (1041)
T KOG0243|consen 436 YTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLK 514 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444222222233333333333444444444444444444444333
No 217
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=86.41 E-value=80 Score=37.63 Aligned_cols=133 Identities=14% Similarity=0.136 Sum_probs=73.8
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----------H
Q 001773 100 KTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCE----------R 169 (1015)
Q Consensus 100 ~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlE----------K 169 (1015)
-..+.+....-+...|.+.+.-..++..++....+.+......|..+...+-..++=+.|.+-|+++-- .
T Consensus 265 lr~Q~~~ve~af~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK~~pLKVAqTRle~Rt~RPnvELCrD~ 344 (421)
T KOG2685|consen 265 LRTQADAVELAFKKRIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDKEGPLKVAQTRLENRTYRPNVELCRDQ 344 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccccHHHHHHHHHHcccCCchHHHHhH
Confidence 333333344444444444444444444444444444445555566666666666777777777776521 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhhccCC
Q 001773 170 EINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAEC---QRLRGLVRKKLP 232 (1015)
Q Consensus 170 E~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEc---qrLr~l~rk~lp 232 (1015)
-.-.|-.+++.+..-+..+..+++..+..+..+......+..+|+-...-+ .+.=++.||+.|
T Consensus 345 AQ~~L~~EV~~l~~t~~~L~~kL~eA~~~l~~L~~~~~rLe~di~~k~nsL~ID~ekcm~mR~~yP 410 (421)
T KOG2685|consen 345 AQYRLVDEVHELDDTVAALKEKLDEAEDSLKLLVNHRARLERDIAIKANSLFIDREKCMLMRKSYP 410 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhccHHHHHHHHhcCC
Confidence 233455666777777777777777776666666666666666665444333 233345566666
No 218
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=86.36 E-value=56 Score=35.79 Aligned_cols=167 Identities=16% Similarity=0.160 Sum_probs=87.7
Q ss_pred hhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHH--HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 61 KLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQD--FVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQE 138 (1015)
Q Consensus 61 ~~~le~rv~hLd~aLKec~~qlr~~reeqeqki~~--~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLee 138 (1015)
......+...+...+...-.+++.++.+-..--.+ .....-..| --.+|+.+|......|......+......+-.
T Consensus 33 ~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~--s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~ 110 (240)
T PF12795_consen 33 IKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANL--SLEELEQRLSQEQAQLQELQEQLQQENSQLIE 110 (240)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666666666666666644422111 001000111 01233444444433333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 001773 139 RSNMLIKISEEKSQAEAEIELLKGNIEQ---------CEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEG 209 (1015)
Q Consensus 139 lqeeI~EL~eeiErlEgEi~LLkERIen---------lEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl 209 (1015)
.+.....+...+..+..++.-+..++.. .......|..++..+..++..+..++.......+-...+....
T Consensus 111 ~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~ 190 (240)
T PF12795_consen 111 IQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLL 190 (240)
T ss_pred HHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHH
Confidence 3333333333333333333333333332 2344455667777777777777777777777778888888899
Q ss_pred HHHHHHHHHHHHHHhhhhhc
Q 001773 210 VKKIAKLEAECQRLRGLVRK 229 (1015)
Q Consensus 210 ~KKLaKLEaEcqrLr~l~rk 229 (1015)
..++..++..++.|+.++-.
T Consensus 191 ~~~~~~l~~~l~~Lq~~ln~ 210 (240)
T PF12795_consen 191 KARIQRLQQQLQALQNLLNQ 210 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887743
No 219
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=86.28 E-value=14 Score=40.36 Aligned_cols=38 Identities=21% Similarity=0.220 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001773 145 KISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVS 182 (1015)
Q Consensus 145 EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~Lq 182 (1015)
++..+.+.++++.+..++|++.++.++.+|...+..+-
T Consensus 153 eL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~ 190 (290)
T COG4026 153 ELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP 190 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 33334444444444455555555555555544444433
No 220
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=86.27 E-value=17 Score=40.95 Aligned_cols=41 Identities=20% Similarity=0.269 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 742 KDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQK 782 (1015)
Q Consensus 742 keelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqe 782 (1015)
+..-+..+-.++.++.++..+|++-+.+|.+|+.||..-++
T Consensus 63 LQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrE 103 (305)
T PF15290_consen 63 LQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMRE 103 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34444556666777777777777777888888887766555
No 221
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=85.99 E-value=65 Score=36.17 Aligned_cols=146 Identities=21% Similarity=0.285 Sum_probs=106.0
Q ss_pred hhHHHHHHHHHHHHhHHHHh--hhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHH------------------HH
Q 001773 39 GWEKAEAEALALKNHLESVT--LSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDF------------------VL 98 (1015)
Q Consensus 39 gwekae~e~~~lK~~Le~~~--~q~~~le~rv~hLd~aLKec~~qlr~~reeqeqki~~~------------------~~ 98 (1015)
-.-+-|-|...++-++..+. ++=.+++-|-.-||-|+..-.--|...-++...||-++ ++
T Consensus 137 rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LM 216 (330)
T KOG2991|consen 137 RLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLM 216 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHH
Confidence 44455777777777777765 44567888888899988887777777777776666664 22
Q ss_pred HHhhhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 001773 99 TKTKQWDKIRLE-----FEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINS 173 (1015)
Q Consensus 99 ~~~~e~e~~~~E-----LEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~ 173 (1015)
.|.+-+-.-..+ -+-+|++++.+|+--+.....+..+-+.+..=+.+|.+..+...+-+-+|+++++...++|.+
T Consensus 217 AKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~ 296 (330)
T KOG2991|consen 217 AKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQR 296 (330)
T ss_pred HHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHH
Confidence 222222111122 244677788888888888888888888888888899999999999999999999999988888
Q ss_pred HHHHHHHHHHH
Q 001773 174 AKYELHIVSKE 184 (1015)
Q Consensus 174 LK~EL~~LqeE 184 (1015)
|+..+..+.+-
T Consensus 297 l~k~~~q~sqa 307 (330)
T KOG2991|consen 297 LKKGLEQVSQA 307 (330)
T ss_pred HHHHHHHHHHH
Confidence 88877666554
No 222
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=85.83 E-value=18 Score=36.07 Aligned_cols=42 Identities=19% Similarity=0.299 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q 001773 810 AEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNE 851 (1015)
Q Consensus 810 aEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~~~ 851 (1015)
.=+.+|..+++.|+..+..++++-+.+..++.+|+..|..+-
T Consensus 70 ~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 70 EAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334556666667777777777777777777777777776543
No 223
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=85.73 E-value=45 Score=35.79 Aligned_cols=97 Identities=13% Similarity=0.191 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001773 735 FEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNL 814 (1015)
Q Consensus 735 leqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLeaEl~e 814 (1015)
|++|+.++.+.+.-+.+....+...+..+..+.......+.++..+...+..+...+.............|.+...=+..
T Consensus 69 veqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLea 148 (188)
T PF05335_consen 69 VEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEA 148 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666666666666666666666666655555555555555444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHh
Q 001773 815 LRAKIESLENELQDEKM 831 (1015)
Q Consensus 815 LqeKVesLE~ELe~ek~ 831 (1015)
.+.+|+.|...|..-+.
T Consensus 149 Ak~Rve~L~~QL~~Ar~ 165 (188)
T PF05335_consen 149 AKRRVEELQRQLQAARA 165 (188)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444443333
No 224
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=85.72 E-value=1.3e+02 Score=39.38 Aligned_cols=47 Identities=19% Similarity=0.183 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001773 181 VSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLV 227 (1015)
Q Consensus 181 LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~ 227 (1015)
+...++....+..........+...+.+..+.+..++..+......+
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~ 433 (908)
T COG0419 387 LEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEI 433 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444445555555555555555555554444333
No 225
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=85.63 E-value=83 Score=37.11 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=12.4
Q ss_pred hhHHHHHhhhhHHHHHHHHHHHhhhHH
Q 001773 62 LTAEDRAAHLDGALKECMRQIRNLKEE 88 (1015)
Q Consensus 62 ~~le~rv~hLd~aLKec~~qlr~~ree 88 (1015)
.-+++|+..+..-|.+...+|...|++
T Consensus 174 ~fl~~ql~~~~~~l~~ae~~l~~fr~~ 200 (444)
T TIGR03017 174 LWFVQQIAALREDLARAQSKLSAYQQE 200 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 226
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=85.19 E-value=16 Score=45.14 Aligned_cols=63 Identities=16% Similarity=0.250 Sum_probs=34.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh
Q 001773 790 QLKCMAESYRSLETHAQELEAEVN---LLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNEN 852 (1015)
Q Consensus 790 qLk~~~e~~edLesrL~eLeaEl~---eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~~~~ 852 (1015)
.+..+...+..|+.+|..+..++. ....++..++.++..++..+.+-..++..|+.+|.....
T Consensus 444 ~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k 509 (652)
T COG2433 444 ELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRK 509 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445555555443333 233445556666666666666666666666666665554
No 227
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=85.19 E-value=27 Score=34.97 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001773 801 LETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEE 845 (1015)
Q Consensus 801 LesrL~eLeaEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLEe 845 (1015)
+......++..+..+...+..++.++.+++..+..+...+..+..
T Consensus 92 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 92 LDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555555555555555554443
No 228
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=85.09 E-value=26 Score=33.57 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001773 803 THAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELE 844 (1015)
Q Consensus 803 srL~eLeaEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLE 844 (1015)
.....++.++..+...+..++..+.++...+.++..++.+++
T Consensus 63 ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 63 EARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555555555666666666666666666666655543
No 229
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=85.07 E-value=1.5e+02 Score=39.72 Aligned_cols=36 Identities=8% Similarity=0.055 Sum_probs=20.1
Q ss_pred HHHhhhhHHH---HHHHHHHHHhHHHHhhhhhhHHHHHh
Q 001773 34 EEAVSGWEKA---EAEALALKNHLESVTLSKLTAEDRAA 69 (1015)
Q Consensus 34 eeav~gweka---e~e~~~lK~~Le~~~~q~~~le~rv~ 69 (1015)
+.|..-+.++ ...+..++++++.+..+...++.++.
T Consensus 51 ~~tl~~l~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~ 89 (1109)
T PRK10929 51 QSALNWLEERKGSLERAKQYQQVIDNFPKLSAELRQQLN 89 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344444443 35566666666666666666555554
No 230
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=84.90 E-value=20 Score=35.88 Aligned_cols=95 Identities=21% Similarity=0.294 Sum_probs=65.0
Q ss_pred HHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHH--HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 001773 45 AEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHE--QKLQDFVLTKTKQWDKIRLEFEAKIANFEQEL 122 (1015)
Q Consensus 45 ~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qlr~~reeqe--qki~~~~~~~~~e~e~~~~ELEaKLaElEkeL 122 (1015)
++.--|..+|..+..++..++-.+...+.||.||- .+-++-. ..+.+++.+. ..+++..+|+.+++.++.++
T Consensus 13 ~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele----~l~eD~~vYk~VG~llvk~--~k~~~~~eL~er~E~Le~ri 86 (119)
T COG1382 13 AQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELE----KLDEDAPVYKKVGNLLVKV--SKEEAVDELEERKETLELRI 86 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCcccHHHHHhhhHHhhh--hHHHHHHHHHHHHHHHHHHH
Confidence 45566778888888888888888888888888875 2322221 3445555544 44678888888888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001773 123 LRSAAENATLSRSLQERSNMLIK 145 (1015)
Q Consensus 123 eelkaEl~aLeeqLeelqeeI~E 145 (1015)
..+..+-..+...+++++..|..
T Consensus 87 ~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 87 KTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776666666666666554
No 231
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=84.55 E-value=32 Score=37.94 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=12.1
Q ss_pred ccchHHHhHhhhccccCCCC
Q 001773 416 LMDDFLEMEKLACLSNDTNS 435 (1015)
Q Consensus 416 lmDDFlEmEkLa~~~~~~~~ 435 (1015)
...|||-+=|++.+-.+.+|
T Consensus 182 ~~V~~LrlGr~~l~~~t~Dg 201 (251)
T PF11932_consen 182 RQVDFLRLGRVALYYQTLDG 201 (251)
T ss_pred EEEEEEeecchhheeECCCc
Confidence 45567777777766555444
No 232
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=84.42 E-value=44 Score=38.01 Aligned_cols=94 Identities=17% Similarity=0.242 Sum_probs=60.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhcccchhhhhhhhh
Q 001773 788 ETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCSSEADENKIKQ 867 (1015)
Q Consensus 788 E~qLk~~~e~~edLesrL~eLeaEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~~~~~~lk~q~~kdLKikq 867 (1015)
.+|++.+-++|+.+ .+++.+++.+-..+..-+......+.+....++.++++|++-|.. + ..-.-..+|++
T Consensus 272 NnqL~~l~q~fr~a-------~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~-m-sDGaplvkIkq 342 (384)
T KOG0972|consen 272 NNQLASLMQKFRRA-------TDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAK-M-SDGAPLVKIKQ 342 (384)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhccc-c-cCCchHHHHHH
Confidence 34555555544444 444455555555566666667777778888899999999987751 1 12222336666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 868 DRDLAAAAERLAECQETILLLGKQL 892 (1015)
Q Consensus 868 EkEIaaAeeKLAEcQeTI~sLEKQL 892 (1015)
.|+.+.+..+.+-..|.-++-.+
T Consensus 343 --avsKLk~et~~mnv~igv~ehs~ 365 (384)
T KOG0972|consen 343 --AVSKLKEETQTMNVQIGVFEHSI 365 (384)
T ss_pred --HHHHHHHHHHhhhhheehhhHHH
Confidence 78888888888887777665443
No 233
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.34 E-value=16 Score=33.19 Aligned_cols=55 Identities=16% Similarity=0.081 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 136 LQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNE 190 (1015)
Q Consensus 136 LeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~E 190 (1015)
+.-++-+|.++.++...+..+...++..++.+++++..|+.+-...++++..+-.
T Consensus 20 I~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLG 74 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444455555555566666677777777777666666555443
No 234
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=84.26 E-value=19 Score=37.27 Aligned_cols=63 Identities=21% Similarity=0.259 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhHHHHHHHHH
Q 001773 731 SLEEFEELKLEKDNLATDLARCTENLEMTKSQLYETE--QLLAEVKAQLASAQKSNSLAETQLKC 793 (1015)
Q Consensus 731 s~EeleqLEsEkeelE~eLee~~eklEel~~qLqelE--~~LeELesQLesLqeS~selE~qLk~ 793 (1015)
+.+++..|..++..+..++..+...+..+..+|..+. +...+|..++..+...+..++..+..
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777666666666666655 23355555555555544444444443
No 235
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=84.24 E-value=47 Score=39.79 Aligned_cols=19 Identities=21% Similarity=0.211 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 001773 208 EGVKKIAKLEAECQRLRGL 226 (1015)
Q Consensus 208 El~KKLaKLEaEcqrLr~l 226 (1015)
....+|..|++.++.+-.-
T Consensus 432 s~d~~I~dLqEQlrDlmf~ 450 (493)
T KOG0804|consen 432 SKDEKITDLQEQLRDLMFF 450 (493)
T ss_pred HHHHHHHHHHHHHHhHhee
Confidence 3444555666666555443
No 236
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=84.18 E-value=29 Score=37.02 Aligned_cols=66 Identities=18% Similarity=0.159 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHH
Q 001773 168 EREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAA 236 (1015)
Q Consensus 168 EKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa 236 (1015)
-.+...|+.++..++.+++... ...-..++.+..........+..-...+--+..-++++.+++..
T Consensus 109 l~~l~~l~~~~~~l~~el~~~~---~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~~k~~~~~~ 174 (188)
T PF03962_consen 109 LEELEELKKELKELKKELEKYS---ENDPEKIEKLKEEIKIAKEAANRWTDNIFSLKSYLKKKFGMDEE 174 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCHH
Confidence 3344444444444444443111 12234556666777777777788888888888888998887654
No 237
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.82 E-value=84 Score=37.57 Aligned_cols=120 Identities=22% Similarity=0.230 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHH-HHHHHHHHHH
Q 001773 732 LEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRS-LETHAQELEA 810 (1015)
Q Consensus 732 ~EeleqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~ed-LesrL~eLea 810 (1015)
++...++.+....+.+++..+..........++.++..+.+|..++-........+-.++..+.....+ ....++.+.-
T Consensus 144 le~~~q~da~~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l~al~l 223 (446)
T KOG4438|consen 144 LELRKQLDAKYQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKNKILNALKL 223 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHH
Confidence 344455666667777777777777777777777777777777777666655555444455444433333 2222222222
Q ss_pred HHH------------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q 001773 811 EVN------------------LLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNE 851 (1015)
Q Consensus 811 El~------------------eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~~~ 851 (1015)
-+- .|.+.++...--+..++..+.++.++.+-|++.+..+.
T Consensus 224 lv~tLee~~~~LktqIV~sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~q 282 (446)
T KOG4438|consen 224 LVVTLEENANCLKTQIVQSPEKLKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQ 282 (446)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Confidence 222 23334444444455556666666666666665555444
No 238
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=83.55 E-value=91 Score=35.86 Aligned_cols=58 Identities=26% Similarity=0.215 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001773 169 REINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGL 226 (1015)
Q Consensus 169 KE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l 226 (1015)
..-..|+.+|..-....+....-+.-+..-+....+.+....+++.++|.+...|+.-
T Consensus 209 ~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k 266 (309)
T PF09728_consen 209 ETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSK 266 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444555555556666666666666666555543
No 239
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=83.53 E-value=1.4e+02 Score=37.99 Aligned_cols=72 Identities=21% Similarity=0.331 Sum_probs=32.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhh
Q 001773 157 IELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGV---KKIAKLEAECQRLRGLVR 228 (1015)
Q Consensus 157 i~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~---KKLaKLEaEcqrLr~l~r 228 (1015)
+..++.++..+.+....++++...+..+.+..-.........+......+.+.. ....+|-.++.++++.+|
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnIR 317 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNIR 317 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCce
Confidence 444444444444444444444444444433333333333333333333333333 444555566666665543
No 240
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=83.50 E-value=1.2e+02 Score=37.16 Aligned_cols=50 Identities=28% Similarity=0.307 Sum_probs=28.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHh----hhhhHHHHHHHHHHhh--hhHHHHHHHHhhh
Q 001773 289 LTERLLAMEEETKMLKEALAK----RNSELQASRNLCAKTA--SKLQSLEAQMQTS 338 (1015)
Q Consensus 289 l~~rl~~~eee~k~lke~l~~----~~~elq~sr~~~a~t~--~kl~~~e~q~~~~ 338 (1015)
+-.-|.-++++....+..+.- |.+|+|+.|+..+.-+ +.-..+|.-+..+
T Consensus 342 ~~~el~~~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~~~~~s~~~elE~rl~~l 397 (511)
T PF09787_consen 342 YYQELYHYREELSRQKSPLQLKLKEKESEIQKLRNQLSARASSSSWNELESRLTQL 397 (511)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhccCCcHhHHHHHhhc
Confidence 333344455555555555443 7888888888776555 3334555555444
No 241
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=83.49 E-value=1.4e+02 Score=37.86 Aligned_cols=283 Identities=17% Similarity=0.201 Sum_probs=0.0
Q ss_pred ChhHHhHHHHHHHHHhhhcchhhHHHHhhhHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHH
Q 001773 1 MEEQIKELNEKLSAANSEISAKEDLVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMR 80 (1015)
Q Consensus 1 l~~~~~~l~ekl~~a~~~~~~kd~lvkqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~ 80 (1015)
++++++.|+--|..--+++ +|..----.-|.|+-.|+.-|+.-+ +...-..++...-..|+..-+
T Consensus 375 ~ed~lk~l~~eLqkks~el--------------eEmtk~k~~ke~eleeL~~~L~e~q-kll~ekk~~eki~E~lq~~eq 439 (786)
T PF05483_consen 375 NEDQLKILTMELQKKSSEL--------------EEMTKQKNNKEVELEELKKILAEKQ-KLLDEKKQFEKIAEELQGTEQ 439 (786)
T ss_pred hHHHHHHHHHHHHHhhHHH--------------HHHHHHhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 81 QIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELL 160 (1015)
Q Consensus 81 qlr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LL 160 (1015)
+|-.+---.+..+||.-..-+-.-+ -....-.++.++..+|..-+-.+..|......++-+--.+..+....-.++.-+
T Consensus 440 el~~llq~~ekev~dLe~~l~~~~~-~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~ 518 (786)
T PF05483_consen 440 ELTGLLQIREKEVHDLEIQLTTIKE-SEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQ 518 (786)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHHHHHh
Q 001773 161 KGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQM 240 (1015)
Q Consensus 161 kERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa~a~m 240 (1015)
++.+.+..+.-.++..+|..+.+.-..+..+++..+..+..... +...++.+-+...+....-+-++-+--.++
T Consensus 519 qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~---Ev~~kl~ksEen~r~~e~e~~~k~kq~k~l--- 592 (786)
T PF05483_consen 519 QEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGE---EVKCKLDKSEENARSIECEILKKEKQMKIL--- 592 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhHHHhhHHHHHHHhhhHHHHHHH---
Q ss_pred HHHHhhhcCCcCCccccCCCCCCCCCCCCCCcccchhhhHhhhhhhHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHH
Q 001773 241 KMEVESLGRDYGDSRLKRSPVKPTSPHLSPVSEFSLDNVQKFQKENEFLTERLLAMEEETKMLKEALAKRNSELQASRNL 320 (1015)
Q Consensus 241 k~ev~~~~~~~~~~r~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~eee~k~lke~l~~~~~elq~sr~~ 320 (1015)
-.......+.++-...++-.+..+||+||--++..+.-+-+.-..
T Consensus 593 -----------------------------------enk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eik 637 (786)
T PF05483_consen 593 -----------------------------------ENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIK 637 (786)
T ss_pred -----------------------------------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhHHHHHHHHhhhcc
Q 001773 321 CAKTASKLQSLEAQMQTSTQ 340 (1015)
Q Consensus 321 ~a~t~~kl~~~e~q~~~~~~ 340 (1015)
..+----+..+..++.+.++
T Consensus 638 Vn~L~~E~e~~kk~~eE~~~ 657 (786)
T PF05483_consen 638 VNKLQEELENLKKKHEEETD 657 (786)
T ss_pred HHHHHHHHHHHHhHHHHHHH
No 242
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=83.36 E-value=87 Score=35.48 Aligned_cols=86 Identities=10% Similarity=0.102 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 144 IKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRL 223 (1015)
Q Consensus 144 ~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrL 223 (1015)
......+..+.++-..|..+|+-...+.++.+.++..++.-.=...+|.+.++..+..+-..+.+.-..+.=|+.++...
T Consensus 179 ~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~qle~~ 258 (267)
T PF10234_consen 179 QQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQLEEY 258 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33333334444444444455555555555555555555555445555666666666666666666666666666666665
Q ss_pred hhhhhc
Q 001773 224 RGLVRK 229 (1015)
Q Consensus 224 r~l~rk 229 (1015)
...-.+
T Consensus 259 ~~~e~~ 264 (267)
T PF10234_consen 259 NRREQE 264 (267)
T ss_pred HHHHhh
Confidence 554443
No 243
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=83.36 E-value=13 Score=33.73 Aligned_cols=65 Identities=26% Similarity=0.310 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 766 TEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEK 830 (1015)
Q Consensus 766 lE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLeaEl~eLqeKVesLE~ELe~ek 830 (1015)
++..+..|+..+..+...++..+...+.+.........++..+-.++..|..+++.|.+|++..+
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555566666666666666666677777777777777777777777777777777777766543
No 244
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=83.19 E-value=3.1 Score=48.54 Aligned_cols=93 Identities=22% Similarity=0.357 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001773 757 EMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESY----RSLETHAQELEAEVNLLRAKIESLENELQDEKMS 832 (1015)
Q Consensus 757 Eel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~----edLesrL~eLeaEl~eLqeKVesLE~ELe~ek~~ 832 (1015)
+....++.++...+.+|+.++..++........++..+.... ..+.+++.+++.++..+...+..++..+......
T Consensus 94 ek~~k~l~el~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~ 173 (370)
T PF02994_consen 94 EKSIKELNELKKRIKELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIEQAIKELEKR 173 (370)
T ss_dssp ------------------------H-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHH
Confidence 333444455555666666666666655444444555444333 2344555555555555555555555555555555
Q ss_pred hHHHHHHHHHHHHHHHh
Q 001773 833 HHNAMAKCKELEEQLQR 849 (1015)
Q Consensus 833 ~eEleaK~keLEeQLe~ 849 (1015)
+..+..+|.+|+..+.+
T Consensus 174 i~~l~~kl~DlEnrsRR 190 (370)
T PF02994_consen 174 IKKLEDKLDDLENRSRR 190 (370)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhccC
Confidence 55555555555555544
No 245
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=82.83 E-value=1.1e+02 Score=36.43 Aligned_cols=59 Identities=17% Similarity=0.178 Sum_probs=32.3
Q ss_pred HHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHH---------HhhhHHHH-HHHHHHHHHHhhhHHHHH
Q 001773 50 LKNHLESVTLSKLTAEDRAAHLDGALKECMRQI---------RNLKEEHE-QKLQDFVLTKTKQWDKIR 108 (1015)
Q Consensus 50 lK~~Le~~~~q~~~le~rv~hLd~aLKec~~ql---------r~~reeqe-qki~~~~~~~~~e~e~~~ 108 (1015)
|-+.+...++++-++..-+.-+++--|--|.+= -++|-||| .-|.-++.++-+-|-+-+
T Consensus 48 l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQaraeqeeEfisntLlkkiqal~kek 116 (552)
T KOG2129|consen 48 LGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQARAEQEEEFISNTLLKKIQALFKEK 116 (552)
T ss_pred HHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhccchHHHHHHHHHHHHHHHhhccc
Confidence 344455555555555555555555433322221 14555555 566668888888886644
No 246
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=82.82 E-value=40 Score=36.20 Aligned_cols=6 Identities=0% Similarity=0.252 Sum_probs=3.4
Q ss_pred cccchh
Q 001773 720 AYESET 725 (1015)
Q Consensus 720 ~~~~~~ 725 (1015)
||+++.
T Consensus 85 GFnV~~ 90 (190)
T PF05266_consen 85 GFNVKF 90 (190)
T ss_pred CCccHH
Confidence 666633
No 247
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=82.65 E-value=67 Score=33.68 Aligned_cols=60 Identities=15% Similarity=0.139 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001773 166 QCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRG 225 (1015)
Q Consensus 166 nlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~ 225 (1015)
+.+.++...-.+.+.++-+|....++...++...+.+...+..+..-|.+.+.-...+..
T Consensus 74 ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~v 133 (159)
T PF05384_consen 74 YSEEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGV 133 (159)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666777777777766667666677766666666666666665554443
No 248
>PF13166 AAA_13: AAA domain
Probab=82.56 E-value=1.4e+02 Score=37.42 Aligned_cols=11 Identities=36% Similarity=0.338 Sum_probs=7.6
Q ss_pred CCCCCcCcchh
Q 001773 375 NDDKVSCADSW 385 (1015)
Q Consensus 375 ~dd~~s~~~sw 385 (1015)
-||.+|+-|+=
T Consensus 533 iDDPISSLD~~ 543 (712)
T PF13166_consen 533 IDDPISSLDHN 543 (712)
T ss_pred ECCCCCCCCHH
Confidence 47877777663
No 249
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=82.30 E-value=1.2e+02 Score=36.34 Aligned_cols=21 Identities=14% Similarity=0.240 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001773 202 ANKQHMEGVKKIAKLEAECQR 222 (1015)
Q Consensus 202 l~KQ~lEl~KKLaKLEaEcqr 222 (1015)
+..++.+....+..+++.+..
T Consensus 289 ~~~~l~~~~~~l~~~~~~l~~ 309 (457)
T TIGR01000 289 VKQEITDLNQKLLELESKIKS 309 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 250
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=82.09 E-value=46 Score=33.36 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 118 FEQELLRSAAENATLSRSLQERSNMLI 144 (1015)
Q Consensus 118 lEkeLeelkaEl~aLeeqLeelqeeI~ 144 (1015)
+...+..++.++..+...+..+...+.
T Consensus 11 l~~~~~~l~~~~~~l~~~~~~l~~~~~ 37 (140)
T PRK03947 11 LAAQLQALQAQIEALQQQLEELQASIN 37 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444433333333333
No 251
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=82.07 E-value=21 Score=32.65 Aligned_cols=60 Identities=23% Similarity=0.340 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 001773 116 ANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAK 175 (1015)
Q Consensus 116 aElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK 175 (1015)
.+-+.+++.+..+-..|...-....+.|-.|.......+..+..+..+++..+.++..|+
T Consensus 8 ~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 8 AEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444433333444444443333333334444444444444444333
No 252
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=81.92 E-value=73 Score=37.00 Aligned_cols=62 Identities=21% Similarity=0.276 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001773 123 LRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKE 184 (1015)
Q Consensus 123 eelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeE 184 (1015)
++-+.+...|.-+-+.+.+++....+-+.+..++...+++=+.++..++..|+..+..+..+
T Consensus 95 ~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e 156 (401)
T PF06785_consen 95 EERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQE 156 (401)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33344455555555555555555555555555555555555555555555555555554444
No 253
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=81.74 E-value=59 Score=33.09 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh
Q 001773 820 ESLENELQDEKMSHHNAMAKCKELEEQLQRNEN 852 (1015)
Q Consensus 820 esLE~ELe~ek~~~eEleaK~keLEeQLe~~~~ 852 (1015)
...+.|++.+=..+.++..|+..+..+|...|.
T Consensus 80 ~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~ 112 (136)
T PF04871_consen 80 KEAQSELDDLLVLLGDLEEKRKKYKERLKELGE 112 (136)
T ss_pred HhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCC
Confidence 567889999999999999999999999998886
No 254
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=81.53 E-value=18 Score=32.09 Aligned_cols=47 Identities=21% Similarity=0.311 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 784 NSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEK 830 (1015)
Q Consensus 784 ~selE~qLk~~~e~~edLesrL~eLeaEl~eLqeKVesLE~ELe~ek 830 (1015)
+..+.+++......+-..+.+|.+.+.+...|..+|..|+.+++..+
T Consensus 13 kQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 13 KQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33455566666666666667777777777777777777777776654
No 255
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=81.33 E-value=70 Score=36.12 Aligned_cols=19 Identities=11% Similarity=0.261 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHhhhHHHH
Q 001773 72 DGALKECMRQIRNLKEEHE 90 (1015)
Q Consensus 72 d~aLKec~~qlr~~reeqe 90 (1015)
-.-|-.+|++||.+|+=--
T Consensus 52 ~~~i~~k~~e~r~~r~lat 70 (338)
T KOG3647|consen 52 RSLIGDKIEELRKARELAT 70 (338)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3347788889988887544
No 256
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=81.24 E-value=1.1e+02 Score=35.39 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=19.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHh
Q 001773 302 MLKEALAKRNSELQASRNLCAKTASKLQSLEAQMQ 336 (1015)
Q Consensus 302 ~lke~l~~~~~elq~sr~~~a~t~~kl~~~e~q~~ 336 (1015)
.|=|.++-||--||-.|..===-+.|+..||..+.
T Consensus 283 aLle~indK~~al~Hqr~tNkILg~rv~ELE~kl~ 317 (319)
T PF09789_consen 283 ALLETINDKNLALQHQRKTNKILGNRVAELEKKLK 317 (319)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666666666665544444455555665554
No 257
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=81.22 E-value=37 Score=32.96 Aligned_cols=35 Identities=14% Similarity=0.240 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 001773 807 ELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCK 841 (1015)
Q Consensus 807 eLeaEl~eLqeKVesLE~ELe~ek~~~eEleaK~k 841 (1015)
.++.++..+...+..|++.+.+++..+.+++..+.
T Consensus 71 ~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 71 ELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433
No 258
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=81.13 E-value=1.1e+02 Score=35.13 Aligned_cols=150 Identities=12% Similarity=0.186 Sum_probs=88.1
Q ss_pred hhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Q 001773 69 AHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFE--------------AKIANFEQELLRSAAENATLSR 134 (1015)
Q Consensus 69 ~hLd~aLKec~~qlr~~reeqeqki~~~~~~~~~e~e~~~~ELE--------------aKLaElEkeLeelkaEl~aLee 134 (1015)
+.|-+|+.+|.+-.-.-|+ .+ -++....-||-.++..+. .+|..++.++..++.++.....
T Consensus 98 sRLaaAi~d~dqsq~skrd-le----lafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trd 172 (305)
T PF14915_consen 98 SRLAAAIQDHDQSQTSKRD-LE----LAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRD 172 (305)
T ss_pred HHHHHHHhhHHHHHhhHHH-HH----HHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777643222222 11 133334455665555544 4444445555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001773 135 SLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIA 214 (1015)
Q Consensus 135 qLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLa 214 (1015)
+|.+..=.+..+...+.+...++.-++.-..+-+......-.....+++++-.+.-+--.+++.++.+++......+-+.
T Consensus 173 aLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~Vi 252 (305)
T PF14915_consen 173 ALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVI 252 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555445555555566666666666665555555555555566666777777777778888888888877766666666
Q ss_pred HHHHHHHHH
Q 001773 215 KLEAECQRL 223 (1015)
Q Consensus 215 KLEaEcqrL 223 (1015)
.+...|...
T Consensus 253 niQ~~f~d~ 261 (305)
T PF14915_consen 253 NIQDQFQDI 261 (305)
T ss_pred hHHHHHHHH
Confidence 666655443
No 259
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=81.10 E-value=93 Score=34.31 Aligned_cols=132 Identities=21% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH------------
Q 001773 742 KDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELE------------ 809 (1015)
Q Consensus 742 keelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLe------------ 809 (1015)
..++..-++.+.+-...+...|++++..+.++...+..+-.....++.+++.+......++.+....-
T Consensus 12 ~a~~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al 91 (225)
T COG1842 12 KANINELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREAL 91 (225)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001773 810 AEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCSSEADENKIKQDRDLAAAAERLAECQETILLL 888 (1015)
Q Consensus 810 aEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~~~~~~lk~q~~kdLKikqEkEIaaAeeKLAEcQeTI~sL 888 (1015)
.+...+.+.+..++..+.........+...+..|+.+|. ..+..+..-.|...-++-+..+...
T Consensus 92 ~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~---------------e~~~~~~~l~ar~~~akA~~~v~~~ 155 (225)
T COG1842 92 EEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIA---------------ELRAKKEALKARKAAAKAQEKVNRS 155 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHH
No 260
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=80.55 E-value=72 Score=40.32 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=19.0
Q ss_pred hhHHHHHhhhhHHHHHHHHHHHhhhHHH
Q 001773 62 LTAEDRAAHLDGALKECMRQIRNLKEEH 89 (1015)
Q Consensus 62 ~~le~rv~hLd~aLKec~~qlr~~reeq 89 (1015)
...-+++..|+.+|-.....+++.+|-.
T Consensus 87 t~~~d~ndklE~~Lankda~lrq~eekn 114 (916)
T KOG0249|consen 87 TSIHDLNDKLENELANKDADLRQNEEKN 114 (916)
T ss_pred CCcccchHHHHHHHhCcchhhchhHHhh
Confidence 3345667778888877777777766644
No 261
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=80.16 E-value=53 Score=36.21 Aligned_cols=81 Identities=19% Similarity=0.143 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001773 145 KISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLR 224 (1015)
Q Consensus 145 EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr 224 (1015)
.+..+...+..++..+...+++++..+..++..+..+++++..++.+++........+.-. +..-+..|.
T Consensus 46 ~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~----------m~~m~~~L~ 115 (251)
T PF11932_consen 46 QWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPL----------MEQMIDELE 115 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH
Confidence 3333444444444444444555555555555555555555544444444443222222222 233345566
Q ss_pred hhhhccCCChH
Q 001773 225 GLVRKKLPGPA 235 (1015)
Q Consensus 225 ~l~rk~lpgpa 235 (1015)
..|.-.+|-+.
T Consensus 116 ~~v~~d~Pf~~ 126 (251)
T PF11932_consen 116 QFVELDLPFLL 126 (251)
T ss_pred HHHhcCCCCCh
Confidence 67777777443
No 262
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=80.04 E-value=43 Score=32.52 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001773 813 NLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQ 848 (1015)
Q Consensus 813 ~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe 848 (1015)
..+..+++.++..+..+......+..++.+++.+|.
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555444444444444444444444
No 263
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=79.77 E-value=1.1e+02 Score=34.34 Aligned_cols=31 Identities=19% Similarity=0.241 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001773 817 AKIESLENELQDEKMSHHNAMAKCKELEEQL 847 (1015)
Q Consensus 817 eKVesLE~ELe~ek~~~eEleaK~keLEeQL 847 (1015)
..++.|+.++...++.++.+...|.+|++.=
T Consensus 91 ~q~s~Leddlsqt~aikeql~kyiReLEQaN 121 (333)
T KOG1853|consen 91 QQESQLEDDLSQTHAIKEQLRKYIRELEQAN 121 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456667777777777777777777666543
No 264
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=79.66 E-value=1.2e+02 Score=38.41 Aligned_cols=20 Identities=30% Similarity=0.384 Sum_probs=14.5
Q ss_pred CCCCCccccccccccccCCC
Q 001773 993 APTPEKSSRGFSRFFSSKGR 1012 (1015)
Q Consensus 993 ~~~~~~~~~~~~~~f~~~~~ 1012 (1015)
.-.|+-++.|.+|.+.+.-.
T Consensus 893 k~~~d~~ss~~q~~~~~s~R 912 (916)
T KOG0249|consen 893 KMQPDAVSSGLQRLDESSVR 912 (916)
T ss_pred cCCcccccccchhhhccccc
Confidence 45688888888888766443
No 265
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=79.55 E-value=2.4e+02 Score=38.05 Aligned_cols=16 Identities=13% Similarity=0.279 Sum_probs=9.5
Q ss_pred cchhhHhhhhhhhhhh
Q 001773 382 ADSWATALISELSQIK 397 (1015)
Q Consensus 382 ~~swasalisel~~fk 397 (1015)
.-+|...+..++..+-
T Consensus 441 ~l~w~~~~~~~l~~l~ 456 (1109)
T PRK10929 441 SLSYPLEIAQDLRRLL 456 (1109)
T ss_pred ChHHHHHHHHHHHHHh
Confidence 4467666666665544
No 266
>PF15456 Uds1: Up-regulated During Septation
Probab=79.49 E-value=35 Score=34.29 Aligned_cols=43 Identities=30% Similarity=0.410 Sum_probs=33.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 730 FSLEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEV 773 (1015)
Q Consensus 730 ~s~EeleqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeEL 773 (1015)
.+.|||+.++.++..+..++.-++.++. +...++++-..+..+
T Consensus 19 Ls~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l 61 (124)
T PF15456_consen 19 LSFEEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRL 61 (124)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 6789999999999999999988887777 666666655444444
No 267
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.45 E-value=25 Score=32.08 Aligned_cols=52 Identities=15% Similarity=0.163 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 001773 118 FEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCER 169 (1015)
Q Consensus 118 lEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEK 169 (1015)
++-++++++.+++.+....+..+.....+..+-+++..+...+++|+..+--
T Consensus 23 LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLG 74 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLG 74 (79)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556777888888888888888888888888888999999999998887643
No 268
>PLN02939 transferase, transferring glycosyl groups
Probab=79.32 E-value=2.3e+02 Score=37.65 Aligned_cols=116 Identities=23% Similarity=0.245 Sum_probs=62.0
Q ss_pred HHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-------HHHHHHHHH
Q 001773 54 LESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIAN-------FEQELLRSA 126 (1015)
Q Consensus 54 Le~~~~q~~~le~rv~hLd~aLKec~~qlr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaE-------lEkeLeelk 126 (1015)
|+.+...+-+|+.+|.-|+--|-|...++..+-++ +++.-+. -.+.+++|.++-..... +..++..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (977)
T PLN02939 158 LEKILTEKEALQGKINILEMRLSETDARIKLAAQE---KIHVEIL--EEQLEKLRNELLIRGATEGLCVHSLSKELDVLK 232 (977)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhc---cccchhh--HHHHHHHhhhhhccccccccccccHHHHHHHHH
Confidence 34444445555555555555555544444433332 2222211 23456666665554444 567778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001773 127 AENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKEL 185 (1015)
Q Consensus 127 aEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeEL 185 (1015)
.++..+...++.+..++.+..+ ..+++--++++..-|...+..++.++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (977)
T PLN02939 233 EENMLLKDDIQFLKAELIEVAE-----------TEERVFKLEKERSLLDASLRELESKF 280 (977)
T ss_pred HHhHHHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888777776654432 23445555555555555555555543
No 269
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=79.23 E-value=1.2e+02 Score=34.31 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=11.8
Q ss_pred hHHhHHHHHHHHHhhhc
Q 001773 3 EQIKELNEKLSAANSEI 19 (1015)
Q Consensus 3 ~~~~~l~ekl~~a~~~~ 19 (1015)
+.+..+|..|..+.-++
T Consensus 16 ~~L~~~N~~L~~~Iqdt 32 (258)
T PF15397_consen 16 DFLTKLNKELIKEIQDT 32 (258)
T ss_pred HHHHHhhHHHHHHHHhH
Confidence 45667777777776655
No 270
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=79.11 E-value=29 Score=35.91 Aligned_cols=6 Identities=0% Similarity=0.158 Sum_probs=2.4
Q ss_pred hhHHHH
Q 001773 616 GFSQKI 621 (1015)
Q Consensus 616 ~l~~~~ 621 (1015)
.+.+.|
T Consensus 21 di~~nL 26 (169)
T PF07106_consen 21 DIFDNL 26 (169)
T ss_pred HHHHHH
Confidence 344444
No 271
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.00 E-value=1.7e+02 Score=36.15 Aligned_cols=61 Identities=18% Similarity=0.247 Sum_probs=41.6
Q ss_pred HHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001773 54 LESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKI 115 (1015)
Q Consensus 54 Le~~~~q~~~le~rv~hLd~aLKec~~qlr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKL 115 (1015)
+|.+...+-.|-++|..|-++|+++|.+|-.++++--+- ..++.+.-+++.++-.-++.+.
T Consensus 333 Ie~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassL-as~glk~ds~Lk~leIalEqkk 393 (654)
T KOG4809|consen 333 IESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSL-ASAGLKRDSKLKSLEIALEQKK 393 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhhhhHHHHHHHHHH
Confidence 455556667788999999999999999999999876653 3333555445444444444433
No 272
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=78.70 E-value=50 Score=40.38 Aligned_cols=100 Identities=14% Similarity=0.214 Sum_probs=71.7
Q ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHH
Q 001773 728 CKFSLEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQE 807 (1015)
Q Consensus 728 ~~~s~EeleqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~e 807 (1015)
+.+-...+.+|-.++..+..+......+++.+..+|..++.....+..+|..+...+..+++++......| +.|+..
T Consensus 415 k~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NY---E~QLs~ 491 (518)
T PF10212_consen 415 KSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNY---EEQLSM 491 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHH
Confidence 34455678888888888888888888888888888888888888888888888888877777776554433 446666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001773 808 LEAEVNLLRAKIESLENELQDEK 830 (1015)
Q Consensus 808 LeaEl~eLqeKVesLE~ELe~ek 830 (1015)
+--.+..+..++..-..+|+.++
T Consensus 492 MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 492 MSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666666666666665554
No 273
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=78.67 E-value=1.1e+02 Score=36.41 Aligned_cols=91 Identities=20% Similarity=0.240 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH------------------------HHHH
Q 001773 758 MTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELE------------------------AEVN 813 (1015)
Q Consensus 758 el~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLe------------------------aEl~ 813 (1015)
....++.+.+.-..+|+.++.+.-+++..++..|..++..+.+.+.-|.... .||+
T Consensus 275 af~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK~~pLKVAqTRle~Rt~RPnvELCrD~AQ~~L~~EV~ 354 (421)
T KOG2685|consen 275 AFKKRIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDKEGPLKVAQTRLENRTYRPNVELCRDQAQYRLVDEVH 354 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccccHHHHHHHHHHcccCCchHHHHhHHHHHHHHHHH
Confidence 3445555666666666666666666666666666666555554443333322 5555
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001773 814 LLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQ 848 (1015)
Q Consensus 814 eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe 848 (1015)
++..-+.+|+..|..-+.....+..--..|+..|.
T Consensus 355 ~l~~t~~~L~~kL~eA~~~l~~L~~~~~rLe~di~ 389 (421)
T KOG2685|consen 355 ELDDTVAALKEKLDEAEDSLKLLVNHRARLERDIA 389 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555444
No 274
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=78.57 E-value=30 Score=37.91 Aligned_cols=65 Identities=14% Similarity=0.241 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q 001773 787 AETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNE 851 (1015)
Q Consensus 787 lE~qLk~~~e~~edLesrL~eLeaEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~~~ 851 (1015)
++++..+..+...-+++++.....+++..++++..|++..+.+...-..+..+...|+++++.-+
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~~~ 213 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIESGG 213 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhccC
Confidence 55566667777777777777888888888888888888888888888888888888888888544
No 275
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=78.38 E-value=0.91 Score=57.02 Aligned_cols=175 Identities=23% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001773 122 LLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCE----REINSAKYELHIVSKELEIRNEEKNMSMR 197 (1015)
Q Consensus 122 LeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlE----KE~e~LK~EL~~LqeELEil~EEle~s~q 197 (1015)
+..+..+.+.+......+...+..+..+++.+..+...+..++...+ .....+..++..+..+++.+.+++.....
T Consensus 181 l~~~~~e~d~l~q~~~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~~el~~~e~ 260 (713)
T PF05622_consen 181 LSRLVAERDELAQRCHELEKQISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLREELERLEE 260 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555555555555555555555555555433 11222223344444555555555555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHHHHHhHHHHhhhcCCcCCccccCCCCCCCCCCCCCCcccchh
Q 001773 198 SAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKMEVESLGRDYGDSRLKRSPVKPTSPHLSPVSEFSLD 277 (1015)
Q Consensus 198 saeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa~a~mk~ev~~~~~~~~~~r~rr~~~~~~~~~~~~~~~~~~~ 277 (1015)
..+.......+..+.+.+|..+...|....+. ...+|+||+-|-.... |..|. +..+.
T Consensus 261 ~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~-------a~~LrDElD~lR~~a~--r~~kl-------------E~~ve 318 (713)
T PF05622_consen 261 QRDDLKIELEELEKEIDELRQENEELQAEARE-------ARALRDELDELREKAD--RADKL-------------ENEVE 318 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhHHHHHHHHH--HHHHH-------------HHHHH
Confidence 55555666666777788888888888887765 3568999997654211 11111 11122
Q ss_pred hhHhhhhhhHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHH
Q 001773 278 NVQKFQKENEFLTERLLAMEEETKMLKEALAKRNSELQASR 318 (1015)
Q Consensus 278 ~~~~~~~~~~~l~~rl~~~eee~k~lke~l~~~~~elq~sr 318 (1015)
+.-+--.+..||-.|+..+++.|..|-+-...=..+|+-++
T Consensus 319 ~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~ 359 (713)
T PF05622_consen 319 KYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKAR 359 (713)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 22222346788899999999999887666555555555443
No 276
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=78.26 E-value=82 Score=33.26 Aligned_cols=33 Identities=18% Similarity=0.411 Sum_probs=28.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001773 864 KIKQDRDLAAAAERLAECQETILLLGKQLKSLR 896 (1015)
Q Consensus 864 KikqEkEIaaAeeKLAEcQeTI~sLEKQLKsLa 896 (1015)
+.....+|.++++.+..|+..|..+|++|..+.
T Consensus 140 ~~~lq~ei~a~e~RL~RCr~Ai~~iE~~I~~~E 172 (173)
T PF07445_consen 140 QQQLQQEILALEQRLQRCRQAIEKIEEQIQRRE 172 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566999999999999999999999998654
No 277
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=77.90 E-value=45 Score=38.48 Aligned_cols=26 Identities=19% Similarity=0.078 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001773 870 DLAAAAERLAECQETILLLGKQLKSL 895 (1015)
Q Consensus 870 EIaaAeeKLAEcQeTI~sLEKQLKsL 895 (1015)
-...+-.++.+.+.+...-...+.-+
T Consensus 293 ~y~~~l~r~~~a~~~~~~~~~~~~vi 318 (362)
T TIGR01010 293 QLKAALTSLQQTRVEADRQQLYLEVI 318 (362)
T ss_pred HHHHHHHHHHHHHHHHHhhheeeeee
Confidence 44455555666665555444444333
No 278
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=77.84 E-value=50 Score=42.03 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 743 DNLATDLARCTENLEMTKSQLYETEQLLAEVKA 775 (1015)
Q Consensus 743 eelE~eLee~~eklEel~~qLqelE~~LeELes 775 (1015)
......++-+.+++..++.++..++..+...+.
T Consensus 263 ~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~ 295 (726)
T PRK09841 263 AQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQ 295 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444
No 279
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=77.62 E-value=51 Score=30.85 Aligned_cols=38 Identities=29% Similarity=0.377 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 001773 812 VNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQR 849 (1015)
Q Consensus 812 l~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~ 849 (1015)
...+..++..++.++..++.....+..++.+++..|..
T Consensus 64 ~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 64 IEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555566555543
No 280
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=77.32 E-value=26 Score=37.37 Aligned_cols=78 Identities=17% Similarity=0.285 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHHHHHhHH
Q 001773 163 NIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKM 242 (1015)
Q Consensus 163 RIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa~a~mk~ 242 (1015)
++..+.+++..++..+..++.+++.....+... .....+-..+.++.+++..|..++..... -.|..+.+|+.
T Consensus 70 ~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~~~------~Dp~~i~~~~~ 142 (188)
T PF03962_consen 70 KLEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKYSE------NDPEKIEKLKE 142 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCHHHHHHHHH
Confidence 333333444444444444444444433333322 11233344444555555555555553322 27899999999
Q ss_pred HHhhh
Q 001773 243 EVESL 247 (1015)
Q Consensus 243 ev~~~ 247 (1015)
++..+
T Consensus 143 ~~~~~ 147 (188)
T PF03962_consen 143 EIKIA 147 (188)
T ss_pred HHHHH
Confidence 88853
No 281
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=77.23 E-value=48 Score=38.07 Aligned_cols=138 Identities=14% Similarity=0.081 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 747 TDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENEL 826 (1015)
Q Consensus 747 ~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLeaEl~eLqeKVesLE~EL 826 (1015)
..|.++.+++.........+.+.-..|.-|+..|+..+.++++.+ ..+.-++.+....++.++..+
T Consensus 84 ~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~--------------~~~~re~~eK~~elEr~K~~~ 149 (302)
T PF09738_consen 84 DSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETL--------------AQLQREYREKIRELERQKRAH 149 (302)
T ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445555555555555555555555333333333 333333333344444444444
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHhhhh--hh--ccc-------------------chhhhh----hhhhHHHHHHHHHHHH
Q 001773 827 QDEKMSHHNAMAKCKELEEQLQRNEN--CA--VCS-------------------SEADEN----KIKQDRDLAAAAERLA 879 (1015)
Q Consensus 827 e~ek~~~eEleaK~keLEeQLe~~~~--~~--lk~-------------------q~~kdL----KikqEkEIaaAeeKLA 879 (1015)
..++.....+...+.+..+-|...|- .. ... .....+ ...++-.+..+...-.
T Consensus 150 d~L~~e~~~Lre~L~~rdeli~khGlVlv~~~~ngd~~~~~~~~~~~~~~~vs~e~a~~L~~aG~g~LDvRLkKl~~eke 229 (302)
T PF09738_consen 150 DSLREELDELREQLKQRDELIEKHGLVLVPDATNGDTSDEPNNVGHPKRALVSQEAAQLLESAGDGSLDVRLKKLADEKE 229 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCeeeCCCCCCCccccCccccCCCcccccchhhhhhhcccCCCCHHHHHHHHHHHHH
Confidence 44555555555555666666666553 10 000 000111 2234445666677777
Q ss_pred HHHHHHHHHHHHHHhccCC
Q 001773 880 ECQETILLLGKQLKSLRPQ 898 (1015)
Q Consensus 880 EcQeTI~sLEKQLKsLa~~ 898 (1015)
+.+.+|..|.-||...+..
T Consensus 230 ~L~~qv~klk~qLee~~~~ 248 (302)
T PF09738_consen 230 ELLEQVRKLKLQLEERQSE 248 (302)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 8888889999999776554
No 282
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=76.77 E-value=4.1 Score=46.76 Aligned_cols=24 Identities=13% Similarity=0.201 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 870 DLAAAAERLAECQETILLLGKQLK 893 (1015)
Q Consensus 870 EIaaAeeKLAEcQeTI~sLEKQLK 893 (1015)
.+...+-.+...+..++.||...-
T Consensus 134 dVSt~aL~ItdLe~RV~~LEs~~s 157 (326)
T PF04582_consen 134 DVSTQALNITDLESRVKALESGSS 157 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred hhhhhcchHhhHHHHHHHHhcCCC
Confidence 334444455556666666666543
No 283
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=76.22 E-value=48 Score=32.39 Aligned_cols=67 Identities=18% Similarity=0.238 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 120 QELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELE 186 (1015)
Q Consensus 120 keLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELE 186 (1015)
.++.++++++..|...+-.-+.....|.+.+...+..+.-+.+.++.+.=.+..|..++..++.+++
T Consensus 5 ~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 5 QEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777666777666666666666666666666666665555555555544
No 284
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=76.12 E-value=1.2e+02 Score=32.66 Aligned_cols=68 Identities=18% Similarity=0.191 Sum_probs=44.6
Q ss_pred HHHHHHHHhhhcchhhHHHHhhhHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHH
Q 001773 8 LNEKLSAANSEISAKEDLVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKEC 78 (1015)
Q Consensus 8 l~ekl~~a~~~~~~kd~lvkqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec 78 (1015)
+.-.+..++..+-.-..++.|+..=+++++.-+.++=+.+.+.+++|+- +...++..+..++.-.+.|
T Consensus 10 ~~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~---~~~~~~~~~~~~~~~A~~A 77 (221)
T PF04012_consen 10 VKANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLER---KLDEAEEEAEKWEKQAELA 77 (221)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4456667777776677899999999998888888887777777666543 3333444444444433333
No 285
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=75.94 E-value=1e+02 Score=31.91 Aligned_cols=43 Identities=16% Similarity=0.287 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 740 LEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQK 782 (1015)
Q Consensus 740 sEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqe 782 (1015)
.++.++...++.++.+++.++.++..+...+.++..-++.++.
T Consensus 6 ~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~ 48 (145)
T COG1730 6 QELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLEN 48 (145)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666777777777777777777666666666666654
No 286
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=75.92 E-value=1.3e+02 Score=36.03 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 103 QWDKIRLEFEAKIANFEQELLRSAAENATLS 133 (1015)
Q Consensus 103 e~e~~~~ELEaKLaElEkeLeelkaEl~aLe 133 (1015)
+|+.--..++.+++..+++...+.+++..+.
T Consensus 10 ~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~ 40 (459)
T KOG0288|consen 10 ENDQRLIDLNTELAQCEKAQSRLSAQLVILR 40 (459)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444443333
No 287
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=75.83 E-value=1.2e+02 Score=32.60 Aligned_cols=29 Identities=21% Similarity=0.188 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001773 199 AEAANKQHMEGVKKIAKLEAECQRLRGLV 227 (1015)
Q Consensus 199 aeal~KQ~lEl~KKLaKLEaEcqrLr~l~ 227 (1015)
...+...+..+..++...++.......+.
T Consensus 160 ~~~a~~~~er~e~ki~~~ea~a~a~~el~ 188 (221)
T PF04012_consen 160 VSSAMDSFERMEEKIEEMEARAEASAELA 188 (221)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455556666666666666665555554
No 288
>PRK09343 prefoldin subunit beta; Provisional
Probab=75.76 E-value=71 Score=31.75 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 738 LKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQL 777 (1015)
Q Consensus 738 LEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQL 777 (1015)
|..++.+.-..++.++.++..+..+.+.++..+.+.+.-+
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~ 44 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKAL 44 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444433333
No 289
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=75.50 E-value=34 Score=31.31 Aligned_cols=22 Identities=41% Similarity=0.412 Sum_probs=18.9
Q ss_pred hhhHHHHHHHHHHHhhhHHHHH
Q 001773 70 HLDGALKECMRQIRNLKEEHEQ 91 (1015)
Q Consensus 70 hLd~aLKec~~qlr~~reeqeq 91 (1015)
.|+..|+++..|+.++++|-+.
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGek 23 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEK 23 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHH
Confidence 5788899999999999998773
No 290
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=75.45 E-value=2.2e+02 Score=35.47 Aligned_cols=37 Identities=24% Similarity=0.339 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHH
Q 001773 40 WEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALK 76 (1015)
Q Consensus 40 wekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLK 76 (1015)
|=.-|--+.+.|+.++-....+.++-.++.++..-|+
T Consensus 336 ~~n~e~~~e~~~r~~e~~kd~~~~~~~~~~~~~~sl~ 372 (607)
T KOG0240|consen 336 WVNLELTAEEWKRKLEKKKDKNVALKEELEKLRNSLK 372 (607)
T ss_pred hhhhHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3344445556666776666666666666666665555
No 291
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=75.15 E-value=58 Score=37.43 Aligned_cols=83 Identities=25% Similarity=0.311 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001773 767 EQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQ 846 (1015)
Q Consensus 767 E~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLeaEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQ 846 (1015)
...|.+++....++=-+++.+.++-..+.-+..-|...+.+++-.+.+++.++...-.+++..+..+..+..++..|+++
T Consensus 83 k~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~ 162 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQ 162 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444334444444444444444444445555555555555555444445555555555555555555555
Q ss_pred HHh
Q 001773 847 LQR 849 (1015)
Q Consensus 847 Le~ 849 (1015)
|..
T Consensus 163 L~~ 165 (302)
T PF09738_consen 163 LKQ 165 (302)
T ss_pred HHH
Confidence 543
No 292
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=75.04 E-value=2.6e+02 Score=36.14 Aligned_cols=90 Identities=18% Similarity=0.142 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001773 103 QWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVS 182 (1015)
Q Consensus 103 e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~Lq 182 (1015)
..|+-...++.+|..++..+..+..+..+++..+..++..+.+..-+++...+++..+...+..-..+|...-.+|+.-.
T Consensus 96 llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~ 175 (1265)
T KOG0976|consen 96 LLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKN 175 (1265)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Confidence 44555555566666665555555555555555555554444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHH
Q 001773 183 KELEIRNEEK 192 (1015)
Q Consensus 183 eELEil~EEl 192 (1015)
.++..++.+.
T Consensus 176 ~~lt~~~~q~ 185 (1265)
T KOG0976|consen 176 EELNEFNMEF 185 (1265)
T ss_pred hHHhHHHHHH
Confidence 4433333333
No 293
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=75.01 E-value=34 Score=38.17 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=32.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001773 795 AESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELE 844 (1015)
Q Consensus 795 ~e~~edLesrL~eLeaEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLE 844 (1015)
..+.+=...+..+|+.++..+...+..|+.|+..+++..-.+=.|++-|+
T Consensus 85 tsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 85 TSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445566666777777777777777777777777766666666654
No 294
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=74.75 E-value=31 Score=41.98 Aligned_cols=44 Identities=16% Similarity=0.186 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001773 181 VSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLR 224 (1015)
Q Consensus 181 LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr 224 (1015)
+.+-+....+++..+...+..+..++.++.++|.+++.++..+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 129 WFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33334444444444444445555555555555555555554443
No 295
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=74.69 E-value=1.1e+02 Score=36.75 Aligned_cols=54 Identities=24% Similarity=0.235 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 167 CEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAEC 220 (1015)
Q Consensus 167 lEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEc 220 (1015)
++++...+-.++..++.+.+.+.++....-+....-+.+.-+....++.++++.
T Consensus 202 le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~ 255 (447)
T KOG2751|consen 202 LEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQI 255 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444433
No 296
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=74.61 E-value=54 Score=30.65 Aligned_cols=25 Identities=28% Similarity=0.194 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 162 GNIEQCEREINSAKYELHIVSKELE 186 (1015)
Q Consensus 162 ERIenlEKE~e~LK~EL~~LqeELE 186 (1015)
.....+..++..|+.+....+.++.
T Consensus 46 ~~r~~L~~en~qLk~E~~~WqerLr 70 (79)
T PRK15422 46 HQREELERENNHLKEQQNGWQERLQ 70 (79)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 297
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=74.32 E-value=79 Score=30.36 Aligned_cols=31 Identities=23% Similarity=0.412 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001773 817 AKIESLENELQDEKMSHHNAMAKCKELEEQL 847 (1015)
Q Consensus 817 eKVesLE~ELe~ek~~~eEleaK~keLEeQL 847 (1015)
.+++.++.++..+......+..++.+++.+|
T Consensus 70 ~~~e~le~~i~~l~~~~~~l~~~~~elk~~l 100 (105)
T cd00632 70 ERLETIELRIKRLERQEEDLQEKLKELQEKI 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 298
>PF14992 TMCO5: TMCO5 family
Probab=73.83 E-value=67 Score=36.54 Aligned_cols=109 Identities=18% Similarity=0.185 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001773 109 LEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEE----KSQAEAEIELLKGNIEQCEREINSAKYELHIVSKE 184 (1015)
Q Consensus 109 ~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~ee----iErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeE 184 (1015)
.+.+..+.+++.+-+.+..++..+.+.+.+++..+.+.... ...+.+-+...+.+++.+......++.++..+...
T Consensus 59 ~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d 138 (280)
T PF14992_consen 59 EERETDLQELELETAKLEKENEHLSKSVQELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDD 138 (280)
T ss_pred hchHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555666666677766667666665433222 23344445555566666666666666655555443
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001773 185 LEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRG 225 (1015)
Q Consensus 185 LEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~ 225 (1015)
.+ ...+--.....-+.+++++|.+.|. |.....
T Consensus 139 ~~-------~v~~l~eDq~~~i~klkE~L~rmE~-ekE~~l 171 (280)
T PF14992_consen 139 YQ-------QVHQLCEDQANEIKKLKEKLRRMEE-EKEMLL 171 (280)
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 22 2222222233334455555555555 433333
No 299
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=73.72 E-value=1.8e+02 Score=33.54 Aligned_cols=46 Identities=17% Similarity=0.342 Sum_probs=31.6
Q ss_pred HHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHH
Q 001773 45 AEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHE 90 (1015)
Q Consensus 45 ~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qlr~~reeqe 90 (1015)
..+-+++.+.+....++..+.++-..+-.-|-+-++..+.+++...
T Consensus 55 e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~ 100 (294)
T COG1340 55 EKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRN 100 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556667777777777777777777777777777777777666554
No 300
>PRK10869 recombination and repair protein; Provisional
Probab=73.64 E-value=2.4e+02 Score=35.03 Aligned_cols=39 Identities=10% Similarity=0.113 Sum_probs=24.2
Q ss_pred HHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhH
Q 001773 35 EAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDG 73 (1015)
Q Consensus 35 eav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~ 73 (1015)
++..-|.++..+...+...-....++.--|+-.+..++.
T Consensus 161 ~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~ 199 (553)
T PRK10869 161 AAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNE 199 (553)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 556678888777777766655555555555555555543
No 301
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=73.53 E-value=86 Score=29.92 Aligned_cols=28 Identities=18% Similarity=0.093 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 001773 147 SEEKSQAEAEIELLKGNIEQCEREINSA 174 (1015)
Q Consensus 147 ~eeiErlEgEi~LLkERIenlEKE~e~L 174 (1015)
.+.+.++..++.-..++.-.+.+....|
T Consensus 30 E~k~~rl~~Ek~kadqkyfa~mr~~d~l 57 (96)
T PF08647_consen 30 EQKKLRLEAEKAKADQKYFAAMRSKDAL 57 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3333333333333333333333333333
No 302
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=73.50 E-value=74 Score=32.21 Aligned_cols=38 Identities=16% Similarity=0.323 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001773 807 ELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELE 844 (1015)
Q Consensus 807 eLeaEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLE 844 (1015)
..+.++..++..++.+..++...+.....++.|+..++
T Consensus 86 ~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 86 QIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555555555555555555555555544443
No 303
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=73.42 E-value=2.7e+02 Score=35.49 Aligned_cols=45 Identities=27% Similarity=0.267 Sum_probs=26.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 001773 186 EIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKK 230 (1015)
Q Consensus 186 Eil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~ 230 (1015)
....+.+..+...=+.+.++++....-|.+|.+.......|+.|+
T Consensus 449 aEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ 493 (961)
T KOG4673|consen 449 AEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKK 493 (961)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHh
Confidence 334444444444445666666666666666666666666666553
No 304
>PRK09343 prefoldin subunit beta; Provisional
Probab=73.04 E-value=1e+02 Score=30.61 Aligned_cols=41 Identities=20% Similarity=0.232 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 734 EFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVK 774 (1015)
Q Consensus 734 eleqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELe 774 (1015)
++.+.=.....++..+..+..+...+..++++++..+.||.
T Consensus 8 ~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~ 48 (121)
T PRK09343 8 EVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELE 48 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555555555555554444444
No 305
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=72.98 E-value=1.6e+02 Score=32.73 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=23.4
Q ss_pred HHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhH
Q 001773 50 LKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKE 87 (1015)
Q Consensus 50 lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qlr~~re 87 (1015)
+..-.+...+....|...|..+...+.+-+.++..+-.
T Consensus 78 l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~ 115 (264)
T PF06008_consen 78 LNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE 115 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 34444445555566666677777777777777766555
No 306
>PF15294 Leu_zip: Leucine zipper
Probab=72.91 E-value=1.8e+02 Score=33.26 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=17.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHH
Q 001773 301 KMLKEALAKRNSELQASRNLCA 322 (1015)
Q Consensus 301 k~lke~l~~~~~elq~sr~~~a 322 (1015)
+.||++|++||.++-..|.-++
T Consensus 256 ~NMk~~ltkKn~QiKeLRkrl~ 277 (278)
T PF15294_consen 256 RNMKEILTKKNEQIKELRKRLA 277 (278)
T ss_pred HHhHHHHHhccHHHHHHHHHhc
Confidence 4689999999999988886554
No 307
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=72.79 E-value=56 Score=30.33 Aligned_cols=78 Identities=14% Similarity=0.164 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001773 766 TEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQEL-EAEVNLLRAKIESLENELQDEKMSHHNAMAKCKEL 843 (1015)
Q Consensus 766 lE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eL-eaEl~eLqeKVesLE~ELe~ek~~~eEleaK~keL 843 (1015)
+.+.|..+...+..+..+...+-.++......+..+....... -..+.....|+..++.++..+...+..+..|...|
T Consensus 12 l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R~~~L 90 (92)
T PF14712_consen 12 LEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKKRADKL 90 (92)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455556666666666655555556665555554444322111 11122256666666666666666555555555544
No 308
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=72.37 E-value=91 Score=29.77 Aligned_cols=43 Identities=19% Similarity=0.149 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 740 LEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQK 782 (1015)
Q Consensus 740 sEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqe 782 (1015)
.|+..++..+......+......+..+++.+.-|..++.....
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadq 45 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQ 45 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544444444444444444444444444433
No 309
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=72.17 E-value=1.5e+02 Score=37.69 Aligned_cols=107 Identities=16% Similarity=0.169 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhcccchhhhh---hhhhHHHHHHH
Q 001773 798 YRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCSSEADEN---KIKQDRDLAAA 874 (1015)
Q Consensus 798 ~edLesrL~eLeaEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~~~~~~lk~q~~kdL---KikqEkEIaaA 874 (1015)
|..+......+........+++..|..++..+++.+..+...+..+...+++.-...... ...+ ....-... +-
T Consensus 222 ~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~L~~~~~~l~~~~-~e 298 (670)
T KOG0239|consen 222 YADLRRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTL--QSDLESLEENLVEKK-KE 298 (670)
T ss_pred hhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-HH
Confidence 333444444444444445555666666666666666666666666666665544300000 0000 00000011 22
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcccCCCCc
Q 001773 875 AERLAECQETILLLGKQLKSLRPQSEVIGSPYS 907 (1015)
Q Consensus 875 eeKLAEcQeTI~sLEKQLKsLa~~~e~~~~~~~ 907 (1015)
...-..+..+|..|.-.|+-+++..-++.+..+
T Consensus 299 ~~~r~kL~N~i~eLkGnIRV~CRvRP~~~~e~~ 331 (670)
T KOG0239|consen 299 KEERRKLHNEILELKGNIRVFCRVRPLLPSEKQ 331 (670)
T ss_pred HHHHHHHHHHHHHhhcCceEEEEecCCCccccc
Confidence 244556777888888888888887777776555
No 310
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=71.45 E-value=75 Score=40.48 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=23.5
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 729 KFSLEEFEELKLEKDNLATDLARCTENL 756 (1015)
Q Consensus 729 ~~s~EeleqLEsEkeelE~eLee~~ekl 756 (1015)
.|..+++..++.++...+..++..+.+.
T Consensus 270 ~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 270 EFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4777889999999999999999887653
No 311
>PRK11519 tyrosine kinase; Provisional
Probab=71.11 E-value=67 Score=40.83 Aligned_cols=28 Identities=14% Similarity=0.224 Sum_probs=21.7
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 729 KFSLEEFEELKLEKDNLATDLARCTENL 756 (1015)
Q Consensus 729 ~~s~EeleqLEsEkeelE~eLee~~ekl 756 (1015)
.|..+++..++.++...+.+++.++.+-
T Consensus 270 ~fL~~ql~~l~~~L~~aE~~l~~fr~~~ 297 (719)
T PRK11519 270 AFLAQQLPEVRSRLDVAENKLNAFRQDK 297 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3677788888888888888888777543
No 312
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=70.93 E-value=7.7 Score=44.62 Aligned_cols=95 Identities=17% Similarity=0.257 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 001773 758 MTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAM 837 (1015)
Q Consensus 758 el~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLeaEl~eLqeKVesLE~ELe~ek~~~eEle 837 (1015)
.+...|..+...+.+++..|..+...+..+...+..+...+.++...+......+-.++..|..+.-++..++.......
T Consensus 60 dLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~a 139 (326)
T PF04582_consen 60 DLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQA 139 (326)
T ss_dssp ----------------------------------------------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhc
Confidence 33333333333333333333333333333333444444444444444444556666777777777777777888888888
Q ss_pred HHHHHHHHHHHhhhh
Q 001773 838 AKCKELEEQLQRNEN 852 (1015)
Q Consensus 838 aK~keLEeQLe~~~~ 852 (1015)
-.|.+|+.++..++.
T Consensus 140 L~ItdLe~RV~~LEs 154 (326)
T PF04582_consen 140 LNITDLESRVKALES 154 (326)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred chHhhHHHHHHHHhc
Confidence 888888888877664
No 313
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=70.61 E-value=1.1e+02 Score=32.86 Aligned_cols=87 Identities=15% Similarity=0.155 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 143 LIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQR 222 (1015)
Q Consensus 143 I~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqr 222 (1015)
++.+.....+.-++..-+.+++.....+...+...+..++..+-.+..+........++..+.+..+......+.++|..
T Consensus 98 LL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~ 177 (190)
T PF05266_consen 98 LLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIEN 177 (190)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555555666666666666666666655555555555666666666666666666665
Q ss_pred Hhhhhhc
Q 001773 223 LRGLVRK 229 (1015)
Q Consensus 223 Lr~l~rk 229 (1015)
.+.-.+.
T Consensus 178 ~e~~F~~ 184 (190)
T PF05266_consen 178 AELEFQS 184 (190)
T ss_pred HHHHHHH
Confidence 5544443
No 314
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=69.80 E-value=2.7e+02 Score=34.10 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=12.0
Q ss_pred HHHhhhhhhHHHHHhhhhHHHHHH
Q 001773 55 ESVTLSKLTAEDRAAHLDGALKEC 78 (1015)
Q Consensus 55 e~~~~q~~~le~rv~hLd~aLKec 78 (1015)
.....+..++.+++.++.....+|
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~ 62 (475)
T PRK10361 39 EEMVAELSAAKQQITQSEHWRAEC 62 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555565555444444
No 315
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=69.44 E-value=10 Score=44.32 Aligned_cols=92 Identities=18% Similarity=0.270 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 001773 761 SQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHA----QELEAEVNLLRAKIESLENELQDEKMSHHNA 836 (1015)
Q Consensus 761 ~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL----~eLeaEl~eLqeKVesLE~ELe~ek~~~eEl 836 (1015)
.........+.++...+..++..+..+......+...+..+.... ..+..++.++..+|+.++..++.........
T Consensus 91 e~~ek~~k~l~el~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~ 170 (370)
T PF02994_consen 91 EEKEKSIKELNELKKRIKELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIEQAIKEL 170 (370)
T ss_dssp ---------------------------H-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHH
Confidence 333333444444544555554444333333322222333332222 2345666667777777777777666666666
Q ss_pred HHHHHHHHHHHHhhhh
Q 001773 837 MAKCKELEEQLQRNEN 852 (1015)
Q Consensus 837 eaK~keLEeQLe~~~~ 852 (1015)
..++..|+..|..+..
T Consensus 171 ~k~i~~l~~kl~DlEn 186 (370)
T PF02994_consen 171 EKRIKKLEDKLDDLEN 186 (370)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6666666666666554
No 316
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=69.32 E-value=18 Score=41.82 Aligned_cols=53 Identities=23% Similarity=0.337 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001773 739 KLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQL 791 (1015)
Q Consensus 739 EsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qL 791 (1015)
+..+..++..+...+..+...+..+.+++..|..|+.+++........++.++
T Consensus 220 ~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~ 272 (344)
T PF12777_consen 220 RQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEI 272 (344)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444555555555555555544444333333333
No 317
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=69.18 E-value=2.4e+02 Score=33.14 Aligned_cols=54 Identities=17% Similarity=0.116 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001773 172 NSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRG 225 (1015)
Q Consensus 172 e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~ 225 (1015)
+.++..|.....+.+.+..+++...+....+..+...+.+-+..+|+..+-++-
T Consensus 241 aqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~p 294 (561)
T KOG1103|consen 241 AQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRP 294 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCc
Confidence 345556666777777777777777777677777777777777777777665543
No 318
>PRK04406 hypothetical protein; Provisional
Probab=68.82 E-value=34 Score=31.52 Aligned_cols=47 Identities=11% Similarity=0.198 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 001773 119 EQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIE 165 (1015)
Q Consensus 119 EkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIe 165 (1015)
+.++..+...+.-++..++.+++.+.+....+.++..++..+.+|+.
T Consensus 10 e~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 10 EERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555555555555555555555544444
No 319
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=68.73 E-value=18 Score=41.73 Aligned_cols=52 Identities=29% Similarity=0.328 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001773 119 EQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCERE 170 (1015)
Q Consensus 119 EkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE 170 (1015)
+.+|...+.++..+...+..++..+.....++.+++.++...+.|+....+-
T Consensus 234 ~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~L 285 (344)
T PF12777_consen 234 EEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKL 285 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHH
Confidence 3333333333333333333333333333333333333333333333333333
No 320
>PRK12705 hypothetical protein; Provisional
Probab=68.16 E-value=3e+02 Score=34.00 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 87 EEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQ 137 (1015)
Q Consensus 87 eeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLe 137 (1015)
.+-+....+++.....++...+.+.+..+.+...++......+......++
T Consensus 44 ~~a~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~~~~~e~rl~~~e~~l~ 94 (508)
T PRK12705 44 KEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLD 94 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334455666666777777777776666655555554444333333333
No 321
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=68.09 E-value=2.2e+02 Score=32.34 Aligned_cols=52 Identities=19% Similarity=0.154 Sum_probs=37.2
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhh-hhHHHHHhhhhHHHHHHHHH
Q 001773 30 TKVAEEAVSGWEKAEAEALALKNHLESVTLSK-LTAEDRAAHLDGALKECMRQ 81 (1015)
Q Consensus 30 ~kvaeeav~gwekae~e~~~lK~~Le~~~~q~-~~le~rv~hLd~aLKec~~q 81 (1015)
..+||-+|..|..+...+..+...|..+.... ...+.++.++...|..-.++
T Consensus 135 taaAe~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~L~~l~~~l~~~~~~ 187 (319)
T PF02601_consen 135 TAAAELIVPDRRELLQRLDELRQRLNRAMRNRLQRKRQRLNQLAKRLQLQSRR 187 (319)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 46799999999999988888888887765443 33456666666666655544
No 322
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=68.02 E-value=3.8e+02 Score=35.20 Aligned_cols=69 Identities=17% Similarity=0.091 Sum_probs=35.8
Q ss_pred HHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 54 LESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLS 133 (1015)
Q Consensus 54 Le~~~~q~~~le~rv~hLd~aLKec~~qlr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLe 133 (1015)
.....-+...++-|+...+.-.+.|++..+. ......++|+-...++..+..++.+...++.++....
T Consensus 469 q~~ls~el~el~k~l~~Ke~l~rr~~~~~~~------------~~~~~~~~e~~~~~le~e~~~le~E~~~l~~el~~~~ 536 (913)
T KOG0244|consen 469 QGSLSGELSELEKRLAEKEPLTRRKAYEKAE------------KSKAKEQYESDSGTLEAEKSPLESERSRLRNELNVFN 536 (913)
T ss_pred HhhhhHHHHHHHhhhccccHHHHHHHHhhhh------------hhHHHHHHhhhhhhHHHHhcccccccHHHHHHHHhhh
Confidence 3334444455555555555555555542221 1223344555555566666666666666666665555
Q ss_pred H
Q 001773 134 R 134 (1015)
Q Consensus 134 e 134 (1015)
.
T Consensus 537 ~ 537 (913)
T KOG0244|consen 537 R 537 (913)
T ss_pred H
Confidence 5
No 323
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=67.98 E-value=28 Score=31.30 Aligned_cols=50 Identities=12% Similarity=0.246 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 001773 119 EQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCE 168 (1015)
Q Consensus 119 EkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlE 168 (1015)
+.++..+...+.-++..++.++..+......+.+++.++..+..|+..+.
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555556666666666767777666666666666666666666554
No 324
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=67.94 E-value=2.2e+02 Score=32.26 Aligned_cols=99 Identities=15% Similarity=0.102 Sum_probs=53.7
Q ss_pred HHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 48 LALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKT-KQWDKIRLEFEAKIANFEQELLRSA 126 (1015)
Q Consensus 48 ~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qlr~~reeqeqki~~~~~~~~-~e~e~~~~ELEaKLaElEkeLeelk 126 (1015)
..++++.+..+..|..|-.-+-++|+.--..+|.|-+=.+ .=..+.+++.... ...+.++.+|+.--...+..+..+.
T Consensus 9 ~el~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~-~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq 87 (258)
T PF15397_consen 9 QELKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYD-IYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQ 87 (258)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHH-HHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4577788888888888888888888776666655543222 1123334333222 2244455555544444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001773 127 AENATLSRSLQERSNMLIKIS 147 (1015)
Q Consensus 127 aEl~aLeeqLeelqeeI~EL~ 147 (1015)
.++..++..+...+.++.-|.
T Consensus 88 ~ql~~l~akI~k~~~el~~L~ 108 (258)
T PF15397_consen 88 QQLEQLDAKIQKTQEELNFLS 108 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555544444333
No 325
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=67.73 E-value=2.4e+02 Score=32.69 Aligned_cols=171 Identities=20% Similarity=0.192 Sum_probs=80.5
Q ss_pred HHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 001773 45 AEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLR 124 (1015)
Q Consensus 45 ~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qlr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLee 124 (1015)
.-+.+|.++-............|+.+|.. +++.+|+..- +|+. +.-+|=|-+-..|-.+|..+.++-+.
T Consensus 27 ~~~~sL~qen~~Lk~El~~ek~~~~~L~~-------e~~~lr~~sv-~~~~---~aEqEEE~isN~LlKkl~~l~keKe~ 95 (310)
T PF09755_consen 27 KRIESLQQENRVLKRELETEKARCKHLQE-------ENRALREASV-RIQA---KAEQEEEFISNTLLKKLQQLKKEKET 95 (310)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444445544443 3344444333 2222 22233355555566666666555444
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001773 125 SAAENATLSR-SLQERSNMLIKISEEKSQAEAEIELLKGN-IEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAA 202 (1015)
Q Consensus 125 lkaEl~aLee-qLeelqeeI~EL~eeiErlEgEi~LLkER-IenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal 202 (1015)
+-.....-.. -.+.++..+..+..++..+++.+.-=++. +..+.+.+..|..+....+..++.+..++-.+...++.-
T Consensus 96 L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~E 175 (310)
T PF09755_consen 96 LALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQE 175 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Confidence 4322222111 11334445555555555555555543333 345556666666666666666666666666555444332
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHhhh
Q 001773 203 NKQ-HMEGVKKIAKLEAECQRLRGL 226 (1015)
Q Consensus 203 ~KQ-~lEl~KKLaKLEaEcqrLr~l 226 (1015)
+.- ...+.+.+.+|+++-+.++.-
T Consensus 176 QE~lvN~L~Kqm~~l~~eKr~Lq~~ 200 (310)
T PF09755_consen 176 QEALVNRLWKQMDKLEAEKRRLQEK 200 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 222333444455544444433
No 326
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=67.57 E-value=3.5e+02 Score=34.51 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=15.8
Q ss_pred HHhhhHHHHHHHHHHHHHHHhhhh
Q 001773 829 EKMSHHNAMAKCKELEEQLQRNEN 852 (1015)
Q Consensus 829 ek~~~eEleaK~keLEeQLe~~~~ 852 (1015)
.+..+..+.+.|..|...+..+++
T Consensus 557 ~k~~~e~LqaE~~~lk~~l~~le~ 580 (716)
T KOG4593|consen 557 KKNRLEELQAELERLKERLTALEG 580 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666667777777776666665
No 327
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=66.86 E-value=3.2e+02 Score=33.78 Aligned_cols=53 Identities=23% Similarity=0.379 Sum_probs=28.6
Q ss_pred HHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHH
Q 001773 64 AEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQ-WDKIRLEFEAKIA 116 (1015)
Q Consensus 64 le~rv~hLd~aLKec~~qlr~~reeqeqki~~~~~~~~~e-~e~~~~ELEaKLa 116 (1015)
+..-+.|....+..-.++|..++...+.++..++..+..+ ++++..++...+.
T Consensus 249 ~~~~i~~a~~~i~~L~~~l~~l~~~~~~~l~~~L~~q~~e~~~~~~~~~~~~le 302 (582)
T PF09731_consen 249 LNSLIAHAKERIDALQKELAELKEEEEEELERALEEQREELLSKLREELEQELE 302 (582)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555556666666666666555555 5555555544433
No 328
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=66.82 E-value=3.7e+02 Score=34.49 Aligned_cols=58 Identities=22% Similarity=0.325 Sum_probs=26.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q 001773 794 MAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNE 851 (1015)
Q Consensus 794 ~~e~~edLesrL~eLeaEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~~~ 851 (1015)
....++.+..++...++.+++++..+..+..+++..+....-++..+..|.-++++++
T Consensus 564 ~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k 621 (698)
T KOG0978|consen 564 AKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLK 621 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333444444444444444444444444444444444444444444444444444444
No 329
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=66.49 E-value=59 Score=39.63 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 733 EEFEELKLEKDNLATDLARCTENLEMTKSQLYET 766 (1015)
Q Consensus 733 EeleqLEsEkeelE~eLee~~eklEel~~qLqel 766 (1015)
+++..++.++..++.++..+++++..+..++.-+
T Consensus 71 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l 104 (525)
T TIGR02231 71 ERLAELRKQIRELEAELRDLEDRGDALKALAKFL 104 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666665555555555333
No 330
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=66.37 E-value=2.3e+02 Score=33.86 Aligned_cols=41 Identities=22% Similarity=0.187 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHH
Q 001773 177 ELHIVSKELEIRNEEKNMS-MRSAEAANKQHMEGVKKIAKLE 217 (1015)
Q Consensus 177 EL~~LqeELEil~EEle~s-~qsaeal~KQ~lEl~KKLaKLE 217 (1015)
|+..++++|....+..+|. ...+..++.-+...+.+|.++|
T Consensus 277 Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 277 EIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443 3345667777788888888888
No 331
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=66.26 E-value=2e+02 Score=31.23 Aligned_cols=40 Identities=18% Similarity=0.141 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 001773 125 SAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNI 164 (1015)
Q Consensus 125 lkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERI 164 (1015)
+..++..+...+..+...+..+..++.........+..|.
T Consensus 104 l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~ 143 (219)
T TIGR02977 104 LERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRH 143 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444444444444444443
No 332
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=65.95 E-value=1.3e+02 Score=28.89 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001773 818 KIESLENELQDEKMSHHNAMAKCKELEEQL 847 (1015)
Q Consensus 818 KVesLE~ELe~ek~~~eEleaK~keLEeQL 847 (1015)
+|+.++..+..+......+..-++.|+.++
T Consensus 67 ~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~ 96 (99)
T PF10046_consen 67 QIDQIEEQVTELEQTVYELDEYSKELESKF 96 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333344444444444444444444443
No 333
>COG5283 Phage-related tail protein [Function unknown]
Probab=65.68 E-value=3.4e+02 Score=36.69 Aligned_cols=117 Identities=12% Similarity=0.103 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001773 733 EEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEV 812 (1015)
Q Consensus 733 EeleqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLeaEl 812 (1015)
..++.|.+-+......-..++.+..-+..-+....-+++.|..-.++...-...+..++.+........+..|.++.+++
T Consensus 22 ~~in~L~ssi~~~~~~~k~~e~q~k~t~~~ls~s~~k~~~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~ 101 (1213)
T COG5283 22 KNINVLKSSIKDSTQFWKMLEKQQKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQY 101 (1213)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666667666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 001773 813 NLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQR 849 (1015)
Q Consensus 813 ~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~ 849 (1015)
.+...++.++...+.--..++.--+..++.++.+|..
T Consensus 102 tqae~~~~sas~q~~~a~~q~~~~~~~iq~~~~~is~ 138 (1213)
T COG5283 102 TQAENKLRSLSGQFGVASEQLMLQQKEIQRLQYAIST 138 (1213)
T ss_pred HHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHh
Confidence 6666666666665555544444444555555555443
No 334
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=65.32 E-value=2.1e+02 Score=31.15 Aligned_cols=96 Identities=22% Similarity=0.318 Sum_probs=60.4
Q ss_pred HhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 68 AAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKIS 147 (1015)
Q Consensus 68 v~hLd~aLKec~~qlr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~ 147 (1015)
++.|-..-.+|-+.+..+.+...+....+ ..+++.+...+..++..++..|......+..+...+..+.. +.
T Consensus 6 l~yL~~~~~e~~~~i~~L~~q~~~~~~~i----~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~----~~ 77 (206)
T PF14988_consen 6 LEYLKKKDEEKEKKIEKLWKQYIQQLEEI----QRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKE----FR 77 (206)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HH
Confidence 45555666677777777777666655555 46667777778888888888888888877777777776532 33
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHH
Q 001773 148 EEKSQAEAEIELLKGNIEQCEREI 171 (1015)
Q Consensus 148 eeiErlEgEi~LLkERIenlEKE~ 171 (1015)
...+..+.+|.-|+..+.....+.
T Consensus 78 ~~k~~qe~eI~~Le~e~~~~~~e~ 101 (206)
T PF14988_consen 78 RLKEQQEREIQTLEEELEKMRAEH 101 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 335
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=65.11 E-value=60 Score=33.82 Aligned_cols=67 Identities=13% Similarity=0.192 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhH
Q 001773 732 LEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESY 798 (1015)
Q Consensus 732 ~EeleqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~ 798 (1015)
.+.+..+.......++.|......+......++.+...|+.|+..+..+...++....++.-..+.+
T Consensus 43 ne~id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~ 109 (157)
T COG3352 43 NEVIDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKT 109 (157)
T ss_pred hHHHHHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhh
Confidence 4577888888888888888877777777777777777777777777777776666666665544433
No 336
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=65.08 E-value=1.1e+02 Score=34.89 Aligned_cols=29 Identities=24% Similarity=0.256 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 735 FEELKLEKDNLATDLARCTENLEMTKSQL 763 (1015)
Q Consensus 735 leqLEsEkeelE~eLee~~eklEel~~qL 763 (1015)
|+-|+..+.+.+++|.+=..+|.+++.||
T Consensus 70 iRHLkakLkes~~~l~dRetEI~eLksQL 98 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRETEIDELKSQL 98 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34444444444444444444444444444
No 337
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=64.52 E-value=83 Score=28.60 Aligned_cols=52 Identities=12% Similarity=0.070 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 001773 122 LLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINS 173 (1015)
Q Consensus 122 LeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~ 173 (1015)
...++..++.+.+.+......+-.+..+.......+...-..+..+..++..
T Consensus 7 ~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~ 58 (69)
T PF14197_consen 7 IATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEA 58 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444433333333333333
No 338
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=64.39 E-value=2e+02 Score=30.70 Aligned_cols=68 Identities=13% Similarity=0.193 Sum_probs=37.1
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHH
Q 001773 730 FSLEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQ--LLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETH 804 (1015)
Q Consensus 730 ~s~EeleqLEsEkeelE~eLee~~eklEel~~qLqelE~--~LeELesQLesLqeS~selE~qLk~~~e~~edLesr 804 (1015)
.+.+++.+|..++..++..++..++.+.-....|+.+.. .+++++..+..|.+ .+..+.++++.+.+-
T Consensus 76 ~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~k-------ev~~~~erl~~~k~g 145 (201)
T KOG4603|consen 76 VSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKK-------EVAGYRERLKNIKAG 145 (201)
T ss_pred CChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Confidence 455677777766666666666666555555555555542 23455555555544 555554444444333
No 339
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=64.39 E-value=58 Score=29.43 Aligned_cols=59 Identities=19% Similarity=0.230 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 001773 110 EFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCE 168 (1015)
Q Consensus 110 ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlE 168 (1015)
.++.++..+=...+.++.+|..|..++..+..+-..+.++.+.+.+++..+-.|+.+++
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 46778888888888888888888888888877777777777777777777777666655
No 340
>PRK14011 prefoldin subunit alpha; Provisional
Probab=63.78 E-value=1.5e+02 Score=30.54 Aligned_cols=43 Identities=14% Similarity=0.146 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 740 LEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQK 782 (1015)
Q Consensus 740 sEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqe 782 (1015)
.+++.+-..|+.++.+++.+..++..+...+.++..-++.++.
T Consensus 3 ~elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~ 45 (144)
T PRK14011 3 EELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEG 45 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455566677777777777777777777777777666666653
No 341
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=63.66 E-value=1.8e+02 Score=35.06 Aligned_cols=80 Identities=21% Similarity=0.172 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001773 119 EQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRS 198 (1015)
Q Consensus 119 EkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qs 198 (1015)
..+++.+..+...|-.++..+..+-..+...+.+.+.+..-+.++-....++...-.+++-..+.++..++.++.+...+
T Consensus 182 ~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~q 261 (447)
T KOG2751|consen 182 LKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQ 261 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHH
Confidence 33344444444444444444433333333333443333333334444444444444444444444455555555444433
No 342
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=63.06 E-value=3.7e+02 Score=33.22 Aligned_cols=63 Identities=13% Similarity=0.127 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHHHHHhHHHHhhhc
Q 001773 183 KELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKMEVESLG 248 (1015)
Q Consensus 183 eELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa~a~mk~ev~~~~ 248 (1015)
..|+.+...+..+.+.+... .........+..|-..|..++..+...-+|+ -.-+..||..|.
T Consensus 378 ~~l~~~~~~~~~le~~~~~~-~~~~~~~~~~~~l~~a~~~l~~~l~~~~~~~--~~p~~~el~~l~ 440 (582)
T PF09731_consen 378 AKLAELNSRLKALEEALDAR-SEAEDENRRAQQLWLAVDALKSALDSGNAGS--PRPFEDELRALK 440 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcC--CCCHHHHHHHHH
Confidence 33444444444444433332 2233344556777777777777777764432 112456666554
No 343
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=62.99 E-value=2.2e+02 Score=32.70 Aligned_cols=79 Identities=19% Similarity=0.247 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHH
Q 001773 773 VKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHH------NAMAKCKELEEQ 846 (1015)
Q Consensus 773 LesQLesLqeS~selE~qLk~~~e~~edLesrL~eLeaEl~eLqeKVesLE~ELe~ek~~~e------EleaK~keLEeQ 846 (1015)
|..||..+-.....+..++..+.+.|+.++.-...-...+.+.-..++.+++|++..=+.+. .+..-+.+|+++
T Consensus 271 lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsKLk~e 350 (384)
T KOG0972|consen 271 LNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLKEE 350 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHH
Confidence 33444444333333333555555555555555555556666666666667777766555443 445555566655
Q ss_pred HHhhh
Q 001773 847 LQRNE 851 (1015)
Q Consensus 847 Le~~~ 851 (1015)
...+.
T Consensus 351 t~~mn 355 (384)
T KOG0972|consen 351 TQTMN 355 (384)
T ss_pred HHhhh
Confidence 55443
No 344
>PLN02939 transferase, transferring glycosyl groups
Probab=62.99 E-value=4.4e+02 Score=35.11 Aligned_cols=118 Identities=20% Similarity=0.199 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhHH-----------HHHHHHHHHHh
Q 001773 732 LEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQL---LAEVKAQLASAQKSNSL-----------AETQLKCMAES 797 (1015)
Q Consensus 732 ~EeleqLEsEkeelE~eLee~~eklEel~~qLqelE~~---LeELesQLesLqeS~se-----------lE~qLk~~~e~ 797 (1015)
.++++++-.|++.++.+++-+..++.++..+++-+-+. .+-++.+++++...+.. +-.++..+.++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (977)
T PLN02939 155 LEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEE 234 (977)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhccccccccccccHHHHHHHHHHH
Confidence 35666666666666666666665555543333222110 11122222222221110 22233333333
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 001773 798 YRSLETHAQELE---AEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQR 849 (1015)
Q Consensus 798 ~edLesrL~eLe---aEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~ 849 (1015)
.-.+...++-++ .++.+..+.+-.|++|...++..+.+++.|+..-++-+..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (977)
T PLN02939 235 NMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSK 289 (977)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 333333333333 4455566667777777777777777777766555544443
No 345
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=62.98 E-value=5.5e+02 Score=35.18 Aligned_cols=171 Identities=18% Similarity=0.208 Sum_probs=99.6
Q ss_pred HHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 65 EDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLI 144 (1015)
Q Consensus 65 e~rv~hLd~aLKec~~qlr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~ 144 (1015)
..++.+|++-.+.|+.|+...+..= ..-++..-..+..-+...+..+.........+...+..+..+..
T Consensus 267 ~~~~~~l~~e~~~l~~~~~~l~~~i-----------~~~~~~t~~~l~~~~~n~~~~~~~~~~~~~~~e~~~~~l~~e~~ 335 (1294)
T KOG0962|consen 267 LKQVKLLDSEHKNLKKQISRLREKI-----------LKIFDGTDEELGELLSNFEERLEEMGEKLRELEREISDLNEERS 335 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-----------ccccccchHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3455555555555555555544421 11222223334444444455555555555555555666666666
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001773 145 KISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSK------------ELEIRNEEKNMSMRSAEAANKQHMEGVKK 212 (1015)
Q Consensus 145 EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~Lqe------------ELEil~EEle~s~qsaeal~KQ~lEl~KK 212 (1015)
.+...+.++.+++..++.+..........+...+..+.- ..+....-.+.....+......+.+..+.
T Consensus 336 ~l~~~k~~~~~~~~~lq~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~~~~~~~q~~k~ 415 (1294)
T KOG0962|consen 336 SLIQLKTELDLEQSELQAEAEFHQELKRQRDSLIQELAHQYQLDSVESLEFMAEVKKDFRNLILERFGGLEDDIKQRKKD 415 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 666666677777766666666665554444333332111 13333333444555566777788888888
Q ss_pred HHHHHHHHHHHhhhhhccCCChHHHHHhHHHHhh
Q 001773 213 IAKLEAECQRLRGLVRKKLPGPAALAQMKMEVES 246 (1015)
Q Consensus 213 LaKLEaEcqrLr~l~rk~lpgpaa~a~mk~ev~~ 246 (1015)
++.++.....++.-++++--+--+.-+|+.+...
T Consensus 416 ~~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 449 (1294)
T KOG0962|consen 416 IAELETNALDLIKEITDREVSLEAQKRIKDEIKK 449 (1294)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888777776677777776654
No 346
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=62.90 E-value=1.8e+02 Score=31.57 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 001773 809 EAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQR 849 (1015)
Q Consensus 809 eaEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~ 849 (1015)
...-...+.....|+.+....+.++..+..+|..|+.+.+.
T Consensus 146 a~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~~ 186 (192)
T PF11180_consen 146 AARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQANE 186 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34445555666667777777777777777777777766653
No 347
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=62.85 E-value=2.3e+02 Score=30.85 Aligned_cols=66 Identities=21% Similarity=0.277 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHH-HHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 72 DGALKECMRQIRNLKEEHEQKLQD-FVLT--KTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQ 137 (1015)
Q Consensus 72 d~aLKec~~qlr~~reeqeqki~~-~~~~--~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLe 137 (1015)
.+|+++|++.....-+=+.-|+.- .++. ....|-.-...++..+..+++.+..++.++..+...-.
T Consensus 99 ~~~w~~al~na~a~lehq~~R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK 167 (221)
T PF05700_consen 99 VEAWKEALDNAYAQLEHQRLRLENLELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERK 167 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777776666666655544431 1111 23457777777777777777777777766666665433
No 348
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=62.71 E-value=3.6e+02 Score=32.94 Aligned_cols=50 Identities=20% Similarity=0.289 Sum_probs=35.0
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 100 KTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEE 149 (1015)
Q Consensus 100 ~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~ee 149 (1015)
.+.+.++.-..|..-++..++.|++.+.+...|.-++......+..|.++
T Consensus 384 EKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEr 433 (527)
T PF15066_consen 384 EKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQER 433 (527)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHH
Confidence 44566666667777777777777777777777777777766666666644
No 349
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=62.62 E-value=4.3e+02 Score=33.77 Aligned_cols=136 Identities=14% Similarity=0.103 Sum_probs=61.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 001773 93 LQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREIN 172 (1015)
Q Consensus 93 i~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e 172 (1015)
+.++...+-.+....+..+...|+..++++..+-..+.............-.-|.+.+..+.-.+..+..+...-.++..
T Consensus 48 ~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~ 127 (660)
T KOG4302|consen 48 CLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFK 127 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555555555555544433222111100000002333333333333334444444444444
Q ss_pred HHHHHHHHHHHHHHHH---------------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001773 173 SAKYELHIVSKELEIR---------------NEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVR 228 (1015)
Q Consensus 173 ~LK~EL~~LqeELEil---------------~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~r 228 (1015)
.+..++..+..++.-. .++++..+..+..++++...-.+++..+..++..+-..+-
T Consensus 128 el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg 198 (660)
T KOG4302|consen 128 ELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLG 198 (660)
T ss_pred HHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4444444444432221 2455555666666666666666666666666655555543
No 350
>PRK02119 hypothetical protein; Provisional
Probab=62.49 E-value=50 Score=30.24 Aligned_cols=47 Identities=13% Similarity=0.162 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 001773 119 EQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIE 165 (1015)
Q Consensus 119 EkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIe 165 (1015)
+.++..+...+.-++..++.++..+.+....+..+..++..+.+|+.
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~ 54 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLK 54 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444555555554444444444444444444443
No 351
>PRK10698 phage shock protein PspA; Provisional
Probab=62.40 E-value=2.4e+02 Score=30.88 Aligned_cols=47 Identities=11% Similarity=0.088 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 001773 122 LLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCE 168 (1015)
Q Consensus 122 LeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlE 168 (1015)
+..++.++......+..+...+..+...+.....+...|..|.....
T Consensus 101 ~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~ 147 (222)
T PRK10698 101 IATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAAS 147 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444455555555555555555544443
No 352
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=62.30 E-value=2.4e+02 Score=31.97 Aligned_cols=120 Identities=16% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 54 LESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLS 133 (1015)
Q Consensus 54 Le~~~~q~~~le~rv~hLd~aLKec~~qlr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLe 133 (1015)
|......+...++.+-.+|.+|.+.-+++...+...+....+. ..-..........++.+...++..+..+...+....
T Consensus 178 L~~fl~~~~~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~-~~l~e~~~~~~~~le~~~~~~ee~~~~L~ekme~e~ 256 (297)
T PF02841_consen 178 LQEFLQSKESMENSILQADQQLTEKEKEIEEEQAKAEAAEKEK-EKLEEKQKEQEQMLEQQERSYEEHIKQLKEKMEEER 256 (297)
T ss_dssp HHHHHHHCHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 001773 134 RSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAK 175 (1015)
Q Consensus 134 eqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK 175 (1015)
..+..-.+.+.... ..++.+--....+.+...+.+++..|+
T Consensus 257 ~~~~~e~e~~l~~k-~~eq~~~l~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 257 EQLLQEQERLLEQK-LQEQEELLKEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcC
No 353
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=61.89 E-value=1.4e+02 Score=27.83 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 001773 808 LEAEVNLLRAKIESLENELQDEKMSHHNAMAKC 840 (1015)
Q Consensus 808 LeaEl~eLqeKVesLE~ELe~ek~~~eEleaK~ 840 (1015)
+...+..+...+..++.+++..+..+.+...+.
T Consensus 57 l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~ 89 (123)
T PF02050_consen 57 LEQAIQQQQQELERLEQEVEQAREELQEARRER 89 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444333333
No 354
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=61.66 E-value=5.5 Score=38.99 Aligned_cols=46 Identities=26% Similarity=0.273 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 737 ELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQK 782 (1015)
Q Consensus 737 qLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqe 782 (1015)
+....+..+...+..+..++..+..++..+...+..++.....++.
T Consensus 22 eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~ 67 (131)
T PF05103_consen 22 EVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQR 67 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 3344445555555555555555555555555444444444444444
No 355
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=61.53 E-value=4.4e+02 Score=33.61 Aligned_cols=128 Identities=14% Similarity=0.136 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhHHH---------HHHHHHHHHHHHHHHH
Q 001773 120 QELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIEL--------LKGNIEQ---------CEREINSAKYELHIVS 182 (1015)
Q Consensus 120 keLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~L--------LkERIen---------lEKE~e~LK~EL~~Lq 182 (1015)
.+|+.++..+..|..+...+-+.+..+...+..+-+.+.+ ....+.. ....+.+|..-+..+.
T Consensus 160 ~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~ 239 (660)
T KOG4302|consen 160 EKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLK 239 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHH
Confidence 6777788888888877777777777777666655444321 1111111 2235566777777777
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHhhhhhccCCChHHHHHh
Q 001773 183 KELEIRNEEKNMSMRSAEAANKQHMEGV----------------------KKIAKLEAECQRLRGLVRKKLPGPAALAQM 240 (1015)
Q Consensus 183 eELEil~EEle~s~qsaeal~KQ~lEl~----------------------KKLaKLEaEcqrLr~l~rk~lpgpaa~a~m 240 (1015)
.+...+...+..+..++..+|..+.... .-|..++.|+.++..|=..+ =+.-+-+|
T Consensus 240 ~~k~qr~~kl~~l~~~~~~LWn~l~ts~Ee~~~f~~~t~~e~t~~~~ls~d~I~~ve~Ev~Rl~qlK~s~--mKeli~k~ 317 (660)
T KOG4302|consen 240 EEKKQRLQKLQDLRTKLLELWNLLDTSDEERQRFVHVTESEATEPNSLSLDIIEQVEKEVDRLEQLKASN--MKELIEKK 317 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHccccHHHhhccccccHHHHHHHHHHHHHHHHHHHHh--HHHHHHHH
Confidence 7777777777778777777776543322 34566679999999986555 46888999
Q ss_pred HHHHhhhcC
Q 001773 241 KMEVESLGR 249 (1015)
Q Consensus 241 k~ev~~~~~ 249 (1015)
|.|++-+-+
T Consensus 318 r~Eleel~~ 326 (660)
T KOG4302|consen 318 RSELEELWR 326 (660)
T ss_pred HHHHHHHHH
Confidence 999998654
No 356
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=61.17 E-value=1.9e+02 Score=29.21 Aligned_cols=36 Identities=17% Similarity=0.327 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001773 90 EQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRS 125 (1015)
Q Consensus 90 eqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeel 125 (1015)
-..|...+..-...|+.+......+...++..+...
T Consensus 74 ~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~ 109 (213)
T cd00176 74 AEEIQERLEELNQRWEELRELAEERRQRLEEALDLQ 109 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667777888888888777777776655443
No 357
>PRK10093 primosomal replication protein N''; Provisional
Probab=61.14 E-value=1.7e+02 Score=31.25 Aligned_cols=65 Identities=15% Similarity=0.238 Sum_probs=41.6
Q ss_pred HHHhhhHHHHHHHHHHHHHHHhhhhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001773 828 DEKMSHHNAMAKCKELEEQLQRNENCAVCSSEADENKIKQDRDLAAAAERLAECQETILLLGKQLKSLR 896 (1015)
Q Consensus 828 ~ek~~~eEleaK~keLEeQLe~~~~~~lk~q~~kdLKikqEkEIaaAeeKLAEcQeTI~sLEKQLKsLa 896 (1015)
+.+.++.+.+.++..+-..=+..- ..........+..++|.++++.|+-|+..+..+|++|....
T Consensus 106 ~~~lqHQd~ERRL~~Mv~dre~~L----~~a~~~~~qq~lq~el~alegRL~RCrqAl~~IE~~Ier~e 170 (171)
T PRK10093 106 RKRIQHQEFERRLLEMVAERRARL----ARATDLVEQQTLHREVEAYEGRLARCRHALEKIENVLARLT 170 (171)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHH----HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344477777777655533322111 11111112334566999999999999999999999998654
No 358
>PRK02793 phi X174 lysis protein; Provisional
Probab=60.88 E-value=53 Score=29.97 Aligned_cols=48 Identities=15% Similarity=0.150 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 001773 119 EQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQ 166 (1015)
Q Consensus 119 EkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIen 166 (1015)
+.++..+...+.-++..++.+++.+.+....+.++..++..+.+|+..
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444555555555555555555555555555555555555543
No 359
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=60.60 E-value=2e+02 Score=32.41 Aligned_cols=51 Identities=16% Similarity=0.165 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001773 742 KDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLK 792 (1015)
Q Consensus 742 keelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk 792 (1015)
+..++..+..++.++..+...+..+...+..++.++..++..+..++.+++
T Consensus 82 l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~ 132 (334)
T TIGR00998 82 LAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLR 132 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 333333344444334433344444444444444444444443333333443
No 360
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=60.55 E-value=1.4e+02 Score=27.77 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=26.3
Q ss_pred HHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHH
Q 001773 65 EDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWD 105 (1015)
Q Consensus 65 e~rv~hLd~aLKec~~qlr~~reeqeqki~~~~~~~~~e~e 105 (1015)
+.=+.++..+|..|..+++.++.-|.. +...+.....++.
T Consensus 6 ~Gl~~~l~P~l~~~~~~l~el~~sQ~~-L~~~i~~~~~~L~ 45 (92)
T PF14712_consen 6 EGLLSLLEPDLDRLDQQLQELRQSQEE-LLQQIDRLNEKLK 45 (92)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 345677888888888888888888874 3333344444433
No 361
>PRK02119 hypothetical protein; Provisional
Probab=60.26 E-value=51 Score=30.14 Aligned_cols=52 Identities=17% Similarity=0.319 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q 001773 800 SLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNE 851 (1015)
Q Consensus 800 dLesrL~eLeaEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~~~ 851 (1015)
.++.|+..|+..+.-+..-|+.|...+-.-...+..+.+++..|.++|..++
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455555666666666666666666666666666666666666666665544
No 362
>PRK11519 tyrosine kinase; Provisional
Probab=59.97 E-value=1.5e+02 Score=37.83 Aligned_cols=31 Identities=23% Similarity=0.233 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 745 LATDLARCTENLEMTKSQLYETEQLLAEVKA 775 (1015)
Q Consensus 745 lE~eLee~~eklEel~~qLqelE~~LeELes 775 (1015)
....+.-+.+++..++.++..++..+...+.
T Consensus 265 a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~ 295 (719)
T PRK11519 265 ASKSLAFLAQQLPEVRSRLDVAENKLNAFRQ 295 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555444
No 363
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=59.76 E-value=2.5e+02 Score=33.68 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 736 EELKLEKDNLATDLARCTENLEMTKS 761 (1015)
Q Consensus 736 eqLEsEkeelE~eLee~~eklEel~~ 761 (1015)
..+..++.++......+...++.++.
T Consensus 215 ~~~~~el~eik~~~~~L~~~~e~Lk~ 240 (395)
T PF10267_consen 215 QKILEELREIKESQSRLEESIEKLKE 240 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444
No 364
>PF15556 Zwint: ZW10 interactor
Probab=59.74 E-value=2.7e+02 Score=30.53 Aligned_cols=142 Identities=15% Similarity=0.179 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 001773 90 EQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCER 169 (1015)
Q Consensus 90 eqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEK 169 (1015)
+|++.+| +.+|..+++.+...++-+..-+-..-. .+++.+.....|.+.++++.+...+..++.....+
T Consensus 58 Rqkai~a----KeQWKeLKAtYqehVEaIk~alt~aL~-------q~eEaqrK~~qLqeA~eqlqaKKqva~eK~r~AQk 126 (252)
T PF15556_consen 58 RQKAIEA----KEQWKELKATYQEHVEAIKSALTQALP-------QVEEAQRKRTQLQEALEQLQAKKQVAMEKLRAAQK 126 (252)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455544 789999999999988877555444433 34455555566666667777776666666655544
Q ss_pred HHHH--------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHHHHHhH
Q 001773 170 EINS--------AKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMK 241 (1015)
Q Consensus 170 E~e~--------LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa~a~mk 241 (1015)
...- |..--....++..--..+++.+.+.+..+..|.-.-..|+.+.+.-++-+-.|- -+++-|.|=+...
T Consensus 127 qwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa~qeqdKLQR~qtfLqLl~tLq-~k~~~~eae~e~~ 205 (252)
T PF15556_consen 127 QWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQQAGQEQDKLQRHQTFLQLLYTLQ-GKLLFPEAEAELP 205 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCcccccch
Confidence 4321 111111222223333445555666666666666666667766666665555554 4455565544444
Q ss_pred HH
Q 001773 242 ME 243 (1015)
Q Consensus 242 ~e 243 (1015)
.|
T Consensus 206 ~~ 207 (252)
T PF15556_consen 206 QE 207 (252)
T ss_pred hh
Confidence 33
No 365
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=59.74 E-value=2.1e+02 Score=32.59 Aligned_cols=8 Identities=25% Similarity=0.219 Sum_probs=3.5
Q ss_pred HHhHhhhc
Q 001773 421 LEMEKLAC 428 (1015)
Q Consensus 421 lEmEkLa~ 428 (1015)
-+|+++..
T Consensus 61 ~~~~~~~~ 68 (269)
T PF05278_consen 61 SEIECMKG 68 (269)
T ss_pred HHHHHHhc
Confidence 34444443
No 366
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=59.53 E-value=1.3e+02 Score=36.17 Aligned_cols=41 Identities=24% Similarity=0.234 Sum_probs=31.8
Q ss_pred HHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhh
Q 001773 46 EALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLK 86 (1015)
Q Consensus 46 e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qlr~~r 86 (1015)
-++.-|+.++...++.---+-.......|.|+.|.|||..-
T Consensus 448 kIlETkke~e~~g~~~~p~e~~a~~~~sa~~~~~~~lr~~~ 488 (583)
T KOG3809|consen 448 KILETKKEIEDGGGQDQPEESDADKIMSAEREKMKQLREKL 488 (583)
T ss_pred HHHHHHHHHHhcCCCCCCChhhhhhHHHHHHHHHHHHHHHH
Confidence 35667788888888777777778888899999888887543
No 367
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=59.40 E-value=4.4e+02 Score=32.83 Aligned_cols=54 Identities=26% Similarity=0.364 Sum_probs=39.8
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHhhh
Q 001773 285 ENEFLTERLLAMEEETKMLKEALAKRNSELQASRNLCAKTASKLQSLEAQMQTS 338 (1015)
Q Consensus 285 ~~~~l~~rl~~~eee~k~lke~l~~~~~elq~sr~~~a~t~~kl~~~e~q~~~~ 338 (1015)
...-+.++|..++++-+.+.+.|..-..+-+.+|-...+--.+|..+.+.+...
T Consensus 380 ~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~ 433 (560)
T PF06160_consen 380 ELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKS 433 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445567788888888888888888877777777777777666776666666633
No 368
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=59.20 E-value=1.5e+02 Score=33.22 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 751 RCTENLEMTKSQLYETEQLLAEVKAQLASAQK 782 (1015)
Q Consensus 751 e~~eklEel~~qLqelE~~LeELesQLesLqe 782 (1015)
.++.++..+...+.+.+..++.|+..|..++.
T Consensus 3 ~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~ 34 (248)
T PF08172_consen 3 ELQKELSELEAKLEEQKELNAKLENDLAKVQA 34 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445555555666666666666666666664
No 369
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=59.15 E-value=55 Score=29.42 Aligned_cols=45 Identities=18% Similarity=0.233 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 738 LKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQK 782 (1015)
Q Consensus 738 LEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqe 782 (1015)
++..+.+++.++....+.++.+...+-.....|..|+.++..+..
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~ 46 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRE 46 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666665555555555555555
No 370
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=58.84 E-value=2.3e+02 Score=29.43 Aligned_cols=30 Identities=7% Similarity=0.112 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 120 QELLRSAAENATLSRSLQERSNMLIKISEE 149 (1015)
Q Consensus 120 keLeelkaEl~aLeeqLeelqeeI~EL~ee 149 (1015)
.++.-+..++..+..++..++..+.++...
T Consensus 13 a~lq~l~~qie~L~~~i~~l~~~~~e~~~~ 42 (145)
T COG1730 13 AQLQILQSQIESLQAQIAALNAAISELQTA 42 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333343333333333333333
No 371
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=58.52 E-value=2.9e+02 Score=30.48 Aligned_cols=26 Identities=15% Similarity=0.100 Sum_probs=13.4
Q ss_pred hhhhHHHHHhhhhHHHHHHHHHHHhh
Q 001773 60 SKLTAEDRAAHLDGALKECMRQIRNL 85 (1015)
Q Consensus 60 q~~~le~rv~hLd~aLKec~~qlr~~ 85 (1015)
....|.+|+.+|+..+.+...++...
T Consensus 93 ~l~~L~~ri~~L~~~i~ee~~~r~~~ 118 (247)
T PF06705_consen 93 RLDSLNDRIEALEEEIQEEKEERPQD 118 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 33345555555555555555544443
No 372
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=58.26 E-value=4.7e+02 Score=32.80 Aligned_cols=166 Identities=19% Similarity=0.221 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001773 733 EEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEV 812 (1015)
Q Consensus 733 EeleqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLeaEl 812 (1015)
+.++.|...+......++....-.+.++.++..-+..+..-...+...+.....+..............-+.+.++....
T Consensus 421 e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~al~el~~~~ 500 (607)
T KOG0240|consen 421 ERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEVKEVLTALEELAVNY 500 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444434444444444444443333333333333333333333322222333333333333222
Q ss_pred HHHHHHHH---H--HHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh--hhccc--------chhhhhhhhhHHHHHHHHHH
Q 001773 813 NLLRAKIE---S--LENELQDEKMSHHNAMAKCKELEEQLQRNEN--CAVCS--------SEADENKIKQDRDLAAAAER 877 (1015)
Q Consensus 813 ~eLqeKVe---s--LE~ELe~ek~~~eEleaK~keLEeQLe~~~~--~~lk~--------q~~kdLKikqEkEIaaAeeK 877 (1015)
....+.+. . ++.+|..++.....-..++..+..++-...+ .+... -.-+++....-..+......
T Consensus 501 ~~~~~~~~~~~~~n~~sel~sl~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~e~~~~~~~~~~~~~~~~ 580 (607)
T KOG0240|consen 501 DQKSEEKESKLSQNLKSELQSLQEPSEHQSKRITELLSELRKDLGEIGWKIGTSSEKRLYIQLEVLQSESNTKMEQEEKE 580 (607)
T ss_pred hHHHHHHhhhhhhhhHHHHHhhhhcccchhHHHHHHHHHHHhhhccccccccCCcccceeeehhhhhhHHHHHHHHHHHh
Confidence 22222221 1 4666777777777777777777776665443 00000 01111111122234445567
Q ss_pred HHHHHHHHHHHHHHHHhccCC
Q 001773 878 LAECQETILLLGKQLKSLRPQ 898 (1015)
Q Consensus 878 LAEcQeTI~sLEKQLKsLa~~ 898 (1015)
+..|+.-|..++.-++++++-
T Consensus 581 ~~~~k~~~s~hs~~~~slt~~ 601 (607)
T KOG0240|consen 581 LRPCKLLISQHSAKKKSLTES 601 (607)
T ss_pred hHHHHHHHHHHHHHHhccchh
Confidence 888999999999998888653
No 373
>PRK00736 hypothetical protein; Provisional
Probab=58.23 E-value=60 Score=29.30 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 001773 122 LLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIE 165 (1015)
Q Consensus 122 LeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIe 165 (1015)
+..+...+.-++..++.++..+......+..+..++..+.+|+.
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~ 50 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFL 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444445555555555555444444444554444444
No 374
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.09 E-value=4.6e+02 Score=32.72 Aligned_cols=56 Identities=20% Similarity=0.258 Sum_probs=30.7
Q ss_pred hhhhhhHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHh
Q 001773 281 KFQKENEFLTERLLAMEEETKMLKEALAKRNSELQASRNLCAKTASKLQSLEAQMQ 336 (1015)
Q Consensus 281 ~~~~~~~~l~~rl~~~eee~k~lke~l~~~~~elq~sr~~~a~t~~kl~~~e~q~~ 336 (1015)
....++.-|-.+|-.||-|--.|---|.---.-|.-++.-|..--.|+-.|=..+.
T Consensus 315 l~iseiqkLkqqL~smErek~~l~anL~dtqt~le~T~~~l~~~~er~~~l~e~v~ 370 (772)
T KOG0999|consen 315 LNISEIQKLKQQLMSMEREKAELLANLQDTQTQLEHTEGDLMEQRERVDRLTEHVQ 370 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccchhHHHHHHHHHHHHHHHHH
Confidence 34556777888888888876555443333333344444444444444444444444
No 375
>PF15456 Uds1: Up-regulated During Septation
Probab=58.00 E-value=96 Score=31.25 Aligned_cols=86 Identities=20% Similarity=0.286 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhcc-cchhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001773 810 AEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVC-SSEADENKIKQDRDLAAAAERLAECQETILLL 888 (1015)
Q Consensus 810 aEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~~~~~~lk-~q~~kdLKikqEkEIaaAeeKLAEcQeTI~sL 888 (1015)
.+|..+..++..|..-+++.+..+. ++.++.+.-..|.+....... .....+-..+++.+++.+..++.+....+..+
T Consensus 22 eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~l 100 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWKL 100 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5677777777778888888888887 888888888888876541111 11111223456678888888888888888888
Q ss_pred HHHHHhcc
Q 001773 889 GKQLKSLR 896 (1015)
Q Consensus 889 EKQLKsLa 896 (1015)
++.+...+
T Consensus 101 e~R~~~~~ 108 (124)
T PF15456_consen 101 ENRLAEVR 108 (124)
T ss_pred HHHHHHHH
Confidence 88876654
No 376
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.90 E-value=4.2e+02 Score=33.25 Aligned_cols=65 Identities=18% Similarity=0.275 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh
Q 001773 787 AETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNEN 852 (1015)
Q Consensus 787 lE~qLk~~~e~~edLesrL~eLeaEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~~~~ 852 (1015)
..+.+.... .|-.++..++.|+.+++..+..|+.|.+++..+.+.+-...-=++++++-|.+.-+
T Consensus 437 ~~~~VQe~~-~Y~g~ekk~n~LE~e~kn~~~ev~kls~ei~~ie~~l~~~~~~vke~nq~l~~g~g 501 (758)
T COG4694 437 FKSDVQEYN-KYCGLEKKINNLEKEIKNNQEEVKKLSNEIKEIEKFLVSIKPIVKEINQTLLKGYG 501 (758)
T ss_pred HHHHHHHHH-HHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhcc
Confidence 455666666 78889999999999999999999999999999999999888889999988887555
No 377
>PF15294 Leu_zip: Leucine zipper
Probab=57.51 E-value=2.5e+02 Score=32.14 Aligned_cols=108 Identities=19% Similarity=0.247 Sum_probs=54.9
Q ss_pred HHHHHHHhHHHHhhhhhhHHHHHhhhhHH-HHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHH-----HHHHH
Q 001773 46 EALALKNHLESVTLSKLTAEDRAAHLDGA-LKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAK-----IANFE 119 (1015)
Q Consensus 46 e~~~lK~~Le~~~~q~~~le~rv~hLd~a-LKec~~qlr~~reeqeqki~~~~~~~~~e~e~~~~ELEaK-----LaElE 119 (1015)
=|+-+++.+..+..+.+.|+--++.|+.- |-+-+. .+. .++ +....+--.+..+..|..- ..-+.
T Consensus 61 n~lllrql~~qAek~~lkl~~diselEn~eLLe~i~---~~E-~~~-----~~~~~~~~~~~~~~KL~pl~e~g~~~ll~ 131 (278)
T PF15294_consen 61 NVLLLRQLFSQAEKWYLKLQTDISELENRELLEQIA---EFE-KQE-----FTSSFKPNQETSKPKLEPLNESGGSELLN 131 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH---HHH-Hhh-----hcccCCccccccccccccccccchHHHHH
Confidence 35667888888888877777666666652 332222 111 111 0000000000000011111 12245
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001773 120 QELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKG 162 (1015)
Q Consensus 120 keLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkE 162 (1015)
.++.+++.+|..+...+...+......-++..+++.+++-++-
T Consensus 132 kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 132 KEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667777777776666666666666666666666665554
No 378
>PRK00846 hypothetical protein; Provisional
Probab=57.10 E-value=68 Score=29.87 Aligned_cols=49 Identities=16% Similarity=0.147 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 001773 119 EQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQC 167 (1015)
Q Consensus 119 EkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenl 167 (1015)
+.++..+...+.-.+..++.++..+......+.++..++..+.+|+...
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444555555555555555555555555555555555555443
No 379
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=56.90 E-value=3.5e+02 Score=30.97 Aligned_cols=19 Identities=0% Similarity=-0.006 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001773 734 EFEELKLEKDNLATDLARC 752 (1015)
Q Consensus 734 eleqLEsEkeelE~eLee~ 752 (1015)
++.+++.++..++..+...
T Consensus 87 ~l~~a~a~l~~a~a~l~~~ 105 (346)
T PRK10476 87 TVAQAQADLALADAQIMTT 105 (346)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 380
>PRK04325 hypothetical protein; Provisional
Probab=56.83 E-value=67 Score=29.46 Aligned_cols=44 Identities=9% Similarity=0.089 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 001773 122 LLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIE 165 (1015)
Q Consensus 122 LeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIe 165 (1015)
+..+...+.-++..++.++..+.+....+.++..++..+.+|+.
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~ 54 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMR 54 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444443
No 381
>PRK02793 phi X174 lysis protein; Provisional
Probab=56.71 E-value=65 Score=29.39 Aligned_cols=51 Identities=24% Similarity=0.333 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q 001773 801 LETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNE 851 (1015)
Q Consensus 801 LesrL~eLeaEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~~~ 851 (1015)
++.|+..|+.++.-+..-|+.|...+-.-...+..+..+++.|.++|..+.
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445666666666666666666666666666666666666667766666554
No 382
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=56.35 E-value=1.4e+02 Score=27.31 Aligned_cols=54 Identities=19% Similarity=0.247 Sum_probs=39.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 93 LQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKI 146 (1015)
Q Consensus 93 i~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL 146 (1015)
++....+.-++|++.-..++........+...+.+.++.|..+++.+...+..+
T Consensus 15 Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 15 LQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556677889998888888888887777777777777777777666555443
No 383
>PRK00295 hypothetical protein; Provisional
Probab=56.25 E-value=75 Score=28.68 Aligned_cols=43 Identities=12% Similarity=0.136 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 001773 123 LRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIE 165 (1015)
Q Consensus 123 eelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIe 165 (1015)
..+...+.-++..++.++..+.+....+..+..++..+..|+.
T Consensus 8 ~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~ 50 (68)
T PRK00295 8 TELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQE 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444444443
No 384
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=55.89 E-value=1.3e+02 Score=33.18 Aligned_cols=59 Identities=22% Similarity=0.255 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001773 167 CEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRG 225 (1015)
Q Consensus 167 lEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~ 225 (1015)
++.++..++.++..+..+++....+++..+...+++.+|..++......|-++.+.++.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~ 207 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQE 207 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 55666777777777777777777777777777777777777777777777777666654
No 385
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=55.78 E-value=1.5e+02 Score=35.48 Aligned_cols=59 Identities=20% Similarity=0.171 Sum_probs=27.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001773 790 QLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQ 848 (1015)
Q Consensus 790 qLk~~~e~~edLesrL~eLeaEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe 848 (1015)
.++.-.++.++++.-+..++.--.....-|+..+..-..++....-++.|++-|+.+|.
T Consensus 154 nLErrrQEaeELEgyCsqLk~nCrkVt~SVedaEiKtnvLkqnS~~LEekLr~lq~qLq 212 (558)
T PF15358_consen 154 NLERRRQEAEELEGYCSQLKENCRKVTRSVEDAEIKTNVLKQNSALLEEKLRYLQQQLQ 212 (558)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccchHHHHHHHHHHHHHhc
Confidence 33333333344444444444333333334444444444445555555566666666655
No 386
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=55.31 E-value=3.6e+02 Score=30.67 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001773 107 IRLEFEAKIANFEQELLRSA 126 (1015)
Q Consensus 107 ~~~ELEaKLaElEkeLeelk 126 (1015)
+...+...+..+..+++..+
T Consensus 163 iE~~l~~ai~~~~~~~~~~~ 182 (267)
T PF10234_consen 163 IEKALKEAIKAVQQQLQQTQ 182 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444333333333
No 387
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=55.16 E-value=1.1e+02 Score=28.34 Aligned_cols=71 Identities=25% Similarity=0.265 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 001773 763 LYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAK 839 (1015)
Q Consensus 763 LqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLeaEl~eLqeKVesLE~ELe~ek~~~eEleaK 839 (1015)
+++.+..|..|+.+--.|+..+.-++..+..... .....+..+..++...+..|..++...+..+.++...
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~------~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~ 72 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGP------ESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKA 72 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888888877777777763311 1222333344444455555555555555555554443
No 388
>PRK00736 hypothetical protein; Provisional
Probab=55.00 E-value=65 Score=29.05 Aligned_cols=49 Identities=24% Similarity=0.260 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q 001773 803 THAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNE 851 (1015)
Q Consensus 803 srL~eLeaEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~~~ 851 (1015)
.++..|+.++.-+..-|+.|...+-.-...+..+..+|..|.+++....
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555555555555555555555555555555566666666665443
No 389
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.97 E-value=4.7e+02 Score=31.80 Aligned_cols=152 Identities=20% Similarity=0.208 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh-HHHHHHHHHHHHhHHHHHHHHHHHHH--HH-HHHHHH
Q 001773 744 NLATDLARCTENLEMTKSQLYETEQ-LLAEVKAQLASAQKSN-SLAETQLKCMAESYRSLETHAQELEA--EV-NLLRAK 818 (1015)
Q Consensus 744 elE~eLee~~eklEel~~qLqelE~-~LeELesQLesLqeS~-selE~qLk~~~e~~edLesrL~eLea--El-~eLqeK 818 (1015)
.+-+.+...+.+......+...... .+..++.++...+... ...++++.... -.+..+...++. .+ .....+
T Consensus 39 ~~l~~~ee~e~~~~~~~A~~~~~~kkel~~~~~q~~~~k~~~~~~~~eqi~~~~---~~~q~e~~~~~~~~~~N~e~dke 115 (438)
T COG4487 39 RILNTLEEFEKEANEKRAQYRSAKKKELSQLEEQLINQKKEQKNLFNEQIKQFE---LALQDEIAKLEALELLNLEKDKE 115 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHhhHH
Confidence 3444455555555554444444444 6666667776665532 23445555443 222233333332 21 233455
Q ss_pred HHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHhhhh-------hhcccchhhhh-hhhhHHHHHHH--HHHHHHHHHHHHH
Q 001773 819 IESLENELQDEKMSHHN-AMAKCKELEEQLQRNEN-------CAVCSSEADEN-KIKQDRDLAAA--AERLAECQETILL 887 (1015)
Q Consensus 819 VesLE~ELe~ek~~~eE-leaK~keLEeQLe~~~~-------~~lk~q~~kdL-KikqEkEIaaA--eeKLAEcQeTI~s 887 (1015)
+..|+.++.....++.+ +..++..++.+.+.... ...+.+.+.++ +.+.+.++..+ .-++++.++.+.+
T Consensus 116 ~~~le~~L~~~~~e~~~~lq~~~e~~~kkre~~k~~~~l~~~~ekK~e~sLe~eR~k~~~ql~~~~~~~e~~e~~e~~~s 195 (438)
T COG4487 116 LELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLEESLELEREKFEEQLHEANLDLEFKENEEQRES 195 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 55556655555555554 44444444433333222 00111111111 33443344433 3456666666666
Q ss_pred HHHHHHhccCC
Q 001773 888 LGKQLKSLRPQ 898 (1015)
Q Consensus 888 LEKQLKsLa~~ 898 (1015)
....++.+.+.
T Consensus 196 ~~~~~k~~k~~ 206 (438)
T COG4487 196 KWAILKKLKRR 206 (438)
T ss_pred HHHHHHHHHHH
Confidence 66666655543
No 390
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=54.43 E-value=1.9e+02 Score=27.09 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q 001773 797 SYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNE 851 (1015)
Q Consensus 797 ~~edLesrL~eLeaEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~~~ 851 (1015)
..++.+..++..-.|+..++++|..|+..-...+.. ++..|..|..+|+..+
T Consensus 26 ~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~---YEeEI~rLr~eLe~r~ 77 (79)
T PF08581_consen 26 QKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQ---YEEEIARLRRELEQRG 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhC
Confidence 444444455555556666666666666555544433 3556666666666544
No 391
>PRK04406 hypothetical protein; Provisional
Probab=54.37 E-value=93 Score=28.71 Aligned_cols=34 Identities=15% Similarity=0.047 Sum_probs=15.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 155 AEIELLKGNIEQCEREINSAKYELHIVSKELEIR 188 (1015)
Q Consensus 155 gEi~LLkERIenlEKE~e~LK~EL~~LqeELEil 188 (1015)
.++..|+.|+.+.+..+..|...+..+++++..+
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L 44 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKM 44 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443333
No 392
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=53.63 E-value=3.1e+02 Score=29.38 Aligned_cols=70 Identities=17% Similarity=0.146 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001773 121 ELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMS 195 (1015)
Q Consensus 121 eLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s 195 (1015)
++..+..++..+...+++++..+.....++..+.+-+. +..++.+++.|+.+.....++|..+..-+...
T Consensus 80 el~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt-----~eemQe~i~~L~kev~~~~erl~~~k~g~~~v 149 (201)
T KOG4603|consen 80 ELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALT-----TEEMQEEIQELKKEVAGYRERLKNIKAGTNHV 149 (201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 34444555555555555555444444333333333222 35555666667776666666666666555444
No 393
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=53.30 E-value=3.1e+02 Score=29.33 Aligned_cols=102 Identities=18% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 001773 749 LARCTENLEMTKSQLYETEQLLAEVKAQLASAQKS-NSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIES-LENEL 826 (1015)
Q Consensus 749 Lee~~eklEel~~qLqelE~~LeELesQLesLqeS-~selE~qLk~~~e~~edLesrL~eLeaEl~eLqeKVes-LE~EL 826 (1015)
|..+.+.+..+.+.+..+-...-..........+. +..++.++..+...+..+..++..+......+..+... ...+.
T Consensus 86 L~rvrde~~~~l~~y~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~ 165 (189)
T PF10211_consen 86 LLRVRDEYRMTLDAYQTLYESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEE 165 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHhh
Q 001773 827 QDEKMSHHNAMAKCKELEEQLQRN 850 (1015)
Q Consensus 827 e~ek~~~eEleaK~keLEeQLe~~ 850 (1015)
..-...+.-+......|..+|+++
T Consensus 166 k~~~~ei~~lk~~~~ql~~~l~~~ 189 (189)
T PF10211_consen 166 KKHQEEIDFLKKQNQQLKAQLEQI 189 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
No 394
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=53.18 E-value=50 Score=40.00 Aligned_cols=21 Identities=14% Similarity=0.167 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001773 762 QLYETEQLLAEVKAQLASAQK 782 (1015)
Q Consensus 762 qLqelE~~LeELesQLesLqe 782 (1015)
.|.+.+.+..+|+.+|+.++.
T Consensus 70 ALteqQ~kasELEKqLaaLrq 90 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEIRR 90 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555543
No 395
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=52.81 E-value=3.5e+02 Score=29.76 Aligned_cols=12 Identities=25% Similarity=0.454 Sum_probs=6.6
Q ss_pred cCCCcccCCCCc
Q 001773 896 RPQSEVIGSPYS 907 (1015)
Q Consensus 896 a~~~e~~~~~~~ 907 (1015)
++.+=.+|+|..
T Consensus 146 APLTW~~GDprR 157 (272)
T KOG4552|consen 146 APLTWQMGDPRR 157 (272)
T ss_pred CccccccCCCCC
Confidence 344556666554
No 396
>PRK04325 hypothetical protein; Provisional
Probab=52.75 E-value=82 Score=28.89 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q 001773 802 ETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNE 851 (1015)
Q Consensus 802 esrL~eLeaEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~~~ 851 (1015)
+.++..|+.++.-+..-|+.|...+-.-...+..+..+|+.|..+|..+.
T Consensus 8 e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 8 EDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555555555555555555555555555555566666666665543
No 397
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=52.49 E-value=4e+02 Score=30.29 Aligned_cols=8 Identities=0% Similarity=-0.682 Sum_probs=3.9
Q ss_pred hhhhhcCC
Q 001773 655 LRINVMGY 662 (1015)
Q Consensus 655 ~~~~~~~~ 662 (1015)
++|.+.+.
T Consensus 20 ~~~~~~~~ 27 (331)
T PRK03598 20 GGWWWYQS 27 (331)
T ss_pred HheeEeee
Confidence 45555543
No 398
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=52.08 E-value=2.5e+02 Score=27.80 Aligned_cols=99 Identities=16% Similarity=0.055 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH--------HHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 749 LARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCM--------AESYRSLETHAQELEAEVNLLRAKIE 820 (1015)
Q Consensus 749 Lee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~--------~e~~edLesrL~eLeaEl~eLqeKVe 820 (1015)
+..++.+.-.++.+++-..-+++.++..+.-.....-+++...+.- .-.+.+....-..++++++...++|.
T Consensus 5 f~~lQ~K~~dtqq~~~~~~vQi~~~nr~kk~~~l~~ke~~~~~de~~~Y~svgrmF~l~dk~a~~s~leak~k~see~Ie 84 (114)
T KOG3501|consen 5 FSQLQEKAVDTQQQLRTIMVQIAAKNRAKKISELAKKELEDVGDEKAVYTSVGRMFMLSDKAAVRSHLEAKMKSSEEKIE 84 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHHHH
Confidence 3444455555555555555445544444444433333333333321 11334555566667899999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001773 821 SLENELQDEKMSHHNAMAKCKELEEQL 847 (1015)
Q Consensus 821 sLE~ELe~ek~~~eEleaK~keLEeQL 847 (1015)
+|+....|+.....+.+.-+++|-+..
T Consensus 85 aLqkkK~YlEk~v~eaE~nLrellqs~ 111 (114)
T KOG3501|consen 85 ALQKKKTYLEKTVSEAEQNLRELLQSR 111 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999988888876543
No 399
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=52.03 E-value=3.1e+02 Score=28.84 Aligned_cols=64 Identities=19% Similarity=0.176 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001773 152 QAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAK 215 (1015)
Q Consensus 152 rlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaK 215 (1015)
.++++...+..++..++.++..|...+..+......+.+.-..+......++..+.+..+++-.
T Consensus 86 ~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~~e 149 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRKLKE 149 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666666666666665555554444444444444455556666666666555443
No 400
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=51.69 E-value=4.9e+02 Score=31.13 Aligned_cols=113 Identities=26% Similarity=0.353 Sum_probs=71.2
Q ss_pred hhHHhHHHHHHHHHhhhcchhhHHHHhhhHH----HHHHhh----------hhHHHHHHHHHHHHhHHHHhhhhhhHHHH
Q 001773 2 EEQIKELNEKLSAANSEISAKEDLVKQHTKV----AEEAVS----------GWEKAEAEALALKNHLESVTLSKLTAEDR 67 (1015)
Q Consensus 2 ~~~~~~l~ekl~~a~~~~~~kd~lvkqh~kv----aeeav~----------gwekae~e~~~lK~~Le~~~~q~~~le~r 67 (1015)
|++.+.|.|-.+.-+-++ +++.--|.|- |----+ |-+--+.||-+|+.|||.-..+.-+++.-
T Consensus 244 Edq~~~LsE~~~k~~q~L---e~~~~~~~~~~P~t~~~~~~~~e~~~~~sD~~~~L~k~vQ~L~AQle~~R~q~e~~q~~ 320 (593)
T KOG4807|consen 244 EDQQNRLSEEIEKKWQEL---EKLPLRENKRVPLTALLNQSRGERRGPPSDGHEALEKEVQALRAQLEAWRLQGEAPQSA 320 (593)
T ss_pred HHHHHHHHHHHHHHHHHH---HhhhhhhcCCCCccccCCCccccccCCCCcchHHHHHHHHHHHHHHHHHHHhccCchhh
Confidence 566777777777666554 2333333332 221123 34445789999999999998887776665
Q ss_pred HhhhhHH-------H-HHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001773 68 AAHLDGA-------L-KECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIAN 117 (1015)
Q Consensus 68 v~hLd~a-------L-Kec~~qlr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaE 117 (1015)
+..+++- + --|.|-+--..+-+-++|-|.--.--+|+++++.+...-+++
T Consensus 321 ~~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRqHqRELekLreEKdrLLAE 378 (593)
T KOG4807|consen 321 LRSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQHQRELEKLREEKDRLLAE 378 (593)
T ss_pred HhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 5544431 2 347777776677777777777666667777777776665554
No 401
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=51.55 E-value=2.9e+02 Score=29.83 Aligned_cols=28 Identities=18% Similarity=0.117 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 001773 759 TKSQLYETEQLLAEVKAQLASAQKSNSL 786 (1015)
Q Consensus 759 l~~qLqelE~~LeELesQLesLqeS~se 786 (1015)
+..+|....+.+..|...+...++.+..
T Consensus 86 Le~~L~~~~qk~~tl~e~~en~K~~~e~ 113 (203)
T KOG3433|consen 86 LESQLATGSQKKATLGESIENRKAGREE 113 (203)
T ss_pred HHHHHHHhhhhHhHHHHHHHHHHhhhhh
Confidence 3333444444444444444444443333
No 402
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=51.43 E-value=1.1e+02 Score=27.65 Aligned_cols=35 Identities=17% Similarity=0.065 Sum_probs=15.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 157 IELLKGNIEQCEREINSAKYELHIVSKELEIRNEE 191 (1015)
Q Consensus 157 i~LLkERIenlEKE~e~LK~EL~~LqeELEil~EE 191 (1015)
+..|-.+.+.+..+|..|..++..+..+...+.+.
T Consensus 9 le~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ek 43 (65)
T TIGR02449 9 VEHLLEYLERLKSENRLLRAQEKTWREERAQLLEK 43 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444455555555444444443333333
No 403
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.23 E-value=1.7e+02 Score=38.19 Aligned_cols=79 Identities=16% Similarity=0.271 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001773 769 LLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQL 847 (1015)
Q Consensus 769 ~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLeaEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQL 847 (1015)
.+..+...+..+.......+.+++.+...+..+..++..+...++.....|+.+.++|..+...+.....++..|...+
T Consensus 485 ~~s~~~~~~~~~~~~~~~~~~ei~~~~~~ln~~~qq~~~l~~~v~~~~~~ve~l~~~L~~~~~~~~~~~s~~~~l~~~~ 563 (847)
T KOG0998|consen 485 WISSLDNDLNLLPLQLSNDNREISSLEKELNELQQQLSVLEGSVKAIESQVENLQKELLDLIYEMADTRSKSTLLDDSF 563 (847)
T ss_pred ccccccchhhhcccccccchhhHHHHHHHHhhhHHHHhHHhhhhhhhhhhhhhhHhHHHHHHHHHHhhcccchhhhhhh
Confidence 3333334444444434444445555555555555565555555555555566777777777777777777777666666
No 404
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=51.18 E-value=7.1e+02 Score=32.82 Aligned_cols=107 Identities=15% Similarity=0.167 Sum_probs=75.2
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHH--HHHHhhhHHHHH
Q 001773 31 KVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDF--VLTKTKQWDKIR 108 (1015)
Q Consensus 31 kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qlr~~reeqeqki~~~--~~~~~~e~e~~~ 108 (1015)
+|+-++=.||-++-+.+.-+-..-+....+-.+.+++-...-+-+++.|..|-.-++.--.-+.|+ +++.-++..+.+
T Consensus 550 ~~~~r~rq~~~~~r~~ld~leaa~e~lE~r~~~~e~~~~e~~se~e~~l~~l~l~~el~~~~~~d~ls~mkd~~~~~q~~ 629 (984)
T COG4717 550 LVQSRIRQHWQQLRKALDQLEAAYEALEGRFAAAEAAMAEWQSEWEEALDELGLSRELSPEQQLDILSTMKDLKKLMQKK 629 (984)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 456666678888888877777777777777777777777777788888888877665555455553 255666667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 109 LEFEAKIANFEQELLRSAAENATLSRSLQ 137 (1015)
Q Consensus 109 ~ELEaKLaElEkeLeelkaEl~aLeeqLe 137 (1015)
.+|..+++.+-.+...+......+...++
T Consensus 630 ~EL~~q~~~L~ee~~af~~~v~~l~~~~e 658 (984)
T COG4717 630 AELTHQVARLREEQAAFEERVEGLLAVLE 658 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 77777777777777776666666655543
No 405
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=51.15 E-value=4.3e+02 Score=30.27 Aligned_cols=56 Identities=20% Similarity=0.213 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001773 737 ELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLK 792 (1015)
Q Consensus 737 qLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk 792 (1015)
.++..+..++..+..++.+++.....+......+..++.++..++..+..++.+++
T Consensus 83 ~~~~~l~~a~a~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~a~~~l~~a~~~~~ 138 (346)
T PRK10476 83 PYELTVAQAQADLALADAQIMTTQRSVDAERSNAASANEQVERARANAKLATRTLE 138 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666665554444444444444444444444444444443
No 406
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.10 E-value=5.7e+02 Score=31.65 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=18.7
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHH
Q 001773 285 ENEFLTERLLAMEEETKMLKEALAKRNSELQASRNL 320 (1015)
Q Consensus 285 ~~~~l~~rl~~~eee~k~lke~l~~~~~elq~sr~~ 320 (1015)
....|++|+. .|..++++||--+.|.-.-
T Consensus 475 Dka~lieriv-------rLQ~a~arknekiefLe~h 503 (613)
T KOG0992|consen 475 DKADLIERIV-------RLQLAIARKNEKIEFLEQH 503 (613)
T ss_pred hhHHHHHHHH-------HHHHHHHHhhhHhHHHHHH
Confidence 3555666664 3566778888887776543
No 407
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=50.74 E-value=3e+02 Score=28.32 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=30.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Q 001773 191 EKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLP 232 (1015)
Q Consensus 191 Ele~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lp 232 (1015)
....+......+......-.+.|.+|..|-..++.-....||
T Consensus 62 ~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~Wa~t~LP 103 (135)
T TIGR03495 62 AQAQLRQQLAQARALLAQREQRIERLKRENEDLRRWADTPLP 103 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhcCCCc
Confidence 333444445555666666777788888888889999988887
No 408
>PF14992 TMCO5: TMCO5 family
Probab=50.57 E-value=4.4e+02 Score=30.23 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccCC
Q 001773 876 ERLAECQETILLLGKQLKSLRPQ 898 (1015)
Q Consensus 876 eKLAEcQeTI~sLEKQLKsLa~~ 898 (1015)
.++.+ .+.+.-|++.+......
T Consensus 161 ~rmE~-ekE~~lLe~el~k~q~~ 182 (280)
T PF14992_consen 161 RRMEE-EKEMLLLEKELSKYQMQ 182 (280)
T ss_pred HHHHH-HHHHHHHHHHHHHHhch
Confidence 45555 44466677777666554
No 409
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=50.49 E-value=2.2e+02 Score=26.81 Aligned_cols=37 Identities=16% Similarity=0.207 Sum_probs=19.8
Q ss_pred HHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhh
Q 001773 50 LKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLK 86 (1015)
Q Consensus 50 lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qlr~~r 86 (1015)
|...|+.+..+....++-+.+|++.+..+..+...++
T Consensus 5 L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 41 (127)
T smart00502 5 LEELLTKLRKKAAELEDALKQLISIIQEVEENAADVE 41 (127)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555566555555554433333
No 410
>PRK00846 hypothetical protein; Provisional
Probab=50.35 E-value=1e+02 Score=28.79 Aligned_cols=46 Identities=15% Similarity=0.040 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 737 ELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQK 782 (1015)
Q Consensus 737 qLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqe 782 (1015)
.++..+..++.++..-.+.++.+...+-.....|..|+.++..+..
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~ 55 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLE 55 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777666666666666666666666666655555555
No 411
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=50.33 E-value=7.9e+02 Score=33.09 Aligned_cols=108 Identities=15% Similarity=0.270 Sum_probs=57.2
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001773 730 FSLEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELE 809 (1015)
Q Consensus 730 ~s~EeleqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLe 809 (1015)
....++.+|...+..+..+|.++...-. .+... +.++.-+++.+.-+..++..+.-.+...+.++...+
T Consensus 649 wdek~~~~L~~~k~rl~eel~ei~~~~~----e~~~v-------~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~ 717 (1141)
T KOG0018|consen 649 WDEKEVDQLKEKKERLLEELKEIQKRRK----EVSSV-------ESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTE 717 (1141)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhhh----hHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777777766666666554110 33333 333333333333333355555545555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001773 810 AEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQ 848 (1015)
Q Consensus 810 aEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe 848 (1015)
.++.+..-++..++.+++.....+.++..++.+.+..+-
T Consensus 718 ~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if 756 (1141)
T KOG0018|consen 718 SEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIF 756 (1141)
T ss_pred HHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666655555555555555555554
No 412
>PF14739 DUF4472: Domain of unknown function (DUF4472)
Probab=49.93 E-value=2.7e+02 Score=27.63 Aligned_cols=92 Identities=16% Similarity=0.125 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001773 118 FEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMR 197 (1015)
Q Consensus 118 lEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~q 197 (1015)
+.+.|-.++.+++.+.++.+ .++++++.++=+++++.--++-...........+...+.........+..+.-.+.+
T Consensus 8 ISKeLVDLQIe~~rL~Eq~E---aE~FELk~~vL~lE~rvleLel~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~l~~ 84 (108)
T PF14739_consen 8 ISKELVDLQIETNRLREQHE---AEKFELKNEVLRLENRVLELELHGDKAAPQIADLRHRLAEAQEDRQELQEEYVSLKK 84 (108)
T ss_pred HHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554433 345555555555555555555555555555555555555555554445555555544
Q ss_pred HHHHHHHHHHHHHHH
Q 001773 198 SAEAANKQHMEGVKK 212 (1015)
Q Consensus 198 saeal~KQ~lEl~KK 212 (1015)
.+.++.+.+..-+.+
T Consensus 85 ~~~a~~k~~~~e~~k 99 (108)
T PF14739_consen 85 NYQALPKAFEAEVAK 99 (108)
T ss_pred HHHHHHHhhccHHHH
Confidence 444444444433333
No 413
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=49.86 E-value=1.9e+02 Score=27.99 Aligned_cols=37 Identities=24% Similarity=0.471 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 001773 813 NLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQR 849 (1015)
Q Consensus 813 ~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~ 849 (1015)
..+..+++.++..+..+...+..+..++..++..|..
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 90 EFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555555543
No 414
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=49.76 E-value=1.1e+02 Score=37.96 Aligned_cols=37 Identities=16% Similarity=0.220 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 745 LATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQ 781 (1015)
Q Consensus 745 lE~eLee~~eklEel~~qLqelE~~LeELesQLesLq 781 (1015)
...+|.+.+.+-.++++.+.++..++++++..+...+
T Consensus 91 Vs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q 127 (907)
T KOG2264|consen 91 VSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQ 127 (907)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Confidence 3333333333333444444444444444444443333
No 415
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=49.60 E-value=1.2e+02 Score=32.00 Aligned_cols=29 Identities=24% Similarity=0.236 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 752 CTENLEMTKSQLYETEQLLAEVKAQLASA 780 (1015)
Q Consensus 752 ~~eklEel~~qLqelE~~LeELesQLesL 780 (1015)
|-..+-.+-.++..++..++.++.+....
T Consensus 116 ~I~r~~~li~~l~~~~~~~~~~~kq~~~~ 144 (192)
T PF05529_consen 116 VIRRVHSLIKELIKLEEKLEALKKQAESA 144 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444544544444444444433
No 416
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=49.56 E-value=2.3e+02 Score=26.71 Aligned_cols=36 Identities=14% Similarity=0.166 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 747 TDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQK 782 (1015)
Q Consensus 747 ~eLee~~eklEel~~qLqelE~~LeELesQLesLqe 782 (1015)
..+..+..++......+..++..+..++.+......
T Consensus 7 ~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 42 (127)
T smart00502 7 ELLTKLRKKAAELEDALKQLISIIQEVEENAADVEA 42 (127)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444433333
No 417
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=49.45 E-value=7.1e+02 Score=32.31 Aligned_cols=129 Identities=15% Similarity=0.169 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH--------HHHHHHHHH
Q 001773 106 KIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCE--------REINSAKYE 177 (1015)
Q Consensus 106 ~~~~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlE--------KE~e~LK~E 177 (1015)
.+..++..++..++.+....+.++.....++...+..+..+..... +....+++=+..+. .-.++.+..
T Consensus 984 dLnekLr~rL~q~eaeR~~~reqlrQ~Q~Q~sqYnqvl~~LksS~~---~K~~~l~El~qEl~d~GV~AD~gAeeRA~~R 1060 (1480)
T COG3096 984 DLNEKLRQRLEQAEAERTRAREQLRQHQAQLSQYNQVLASLKSSYD---TKKELLNELQQELQDIGVRADSGAEERARIR 1060 (1480)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHhCCCcCcchHHHHHHH
Confidence 3455566666666666666666666555555555555554443322 12222211111110 011222333
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHHH
Q 001773 178 LHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAAL 237 (1015)
Q Consensus 178 L~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa~ 237 (1015)
-..+...|-.-...+.+..+.+.-.......+++++.++|......+.+|--.-.|--++
T Consensus 1061 RDELh~~Lst~RsRr~~~EkqlT~~E~E~~~L~~~~rK~ErDY~~~Re~VV~AK~~WC~V 1120 (1480)
T COG3096 1061 RDELHAQLSTNRSRRNQLEKQLTFCEAEMDNLTRKLRKLERDYFEMREQVVTAKAGWCAV 1120 (1480)
T ss_pred HHHHHHHHhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhh
Confidence 334445555555667777777888888888888999999999988888876555554444
No 418
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=48.95 E-value=4.4e+02 Score=29.71 Aligned_cols=114 Identities=15% Similarity=0.191 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH------
Q 001773 114 KIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEI------ 187 (1015)
Q Consensus 114 KLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEi------ 187 (1015)
++.+-+.-+...-.++++-++.|=.....|..|-.+...++...+.+...+++.......|+.-+..++.+++.
T Consensus 86 el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~~~~~g~~~ 165 (254)
T KOG2196|consen 86 ELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETKLELQSGHTY 165 (254)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh
Confidence 33333444444455555556666666666666666666666666666666777666666666666666665443
Q ss_pred ---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001773 188 ---RNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLV 227 (1015)
Q Consensus 188 ---l~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~ 227 (1015)
...++...-+-++.+..|+..+-..|..+-..+.....-+
T Consensus 166 ~~~~D~eR~qty~~a~nidsqLk~l~~dL~~ii~~lN~~~~~~ 208 (254)
T KOG2196|consen 166 LSRADVEREQTYKMAENIDSQLKRLSEDLKQIIKSLNTMSKTV 208 (254)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcc
Confidence 3345555555555555566555555555544444443333
No 419
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.81 E-value=4.2e+02 Score=29.53 Aligned_cols=125 Identities=17% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 001773 87 EEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQ 166 (1015)
Q Consensus 87 eeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIen 166 (1015)
..+..++-..+....+..=.-..+.-.++.....++..+.+.+.....++....+.+.+-......++.++...+++++-
T Consensus 25 ~n~~s~~D~f~q~~r~~~~nS~~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEv 104 (246)
T KOG4657|consen 25 HNQRSKIDSFIQSPRRRSMNSLVEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEV 104 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001773 167 CEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAK 215 (1015)
Q Consensus 167 lEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaK 215 (1015)
+.+.++.++.+.. --.+++...+....++.+..-+. ++....+..
T Consensus 105 l~~n~Q~lkeE~d---d~keiIs~kr~~~~Ka~e~~~kR-kQdsa~~~e 149 (246)
T KOG4657|consen 105 LRRNLQLLKEEKD---DSKEIISQKRQALSKAKENAGKR-KQDSADIHE 149 (246)
T ss_pred HHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHH-HhhhhccHH
No 420
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=48.71 E-value=80 Score=34.21 Aligned_cols=30 Identities=30% Similarity=0.364 Sum_probs=25.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhhhhHHHH
Q 001773 288 FLTERLLAMEEETKMLKEALAKRNSELQAS 317 (1015)
Q Consensus 288 ~l~~rl~~~eee~k~lke~l~~~~~elq~s 317 (1015)
.+.+=|..+|+.-.+|...|+.|..||+.-
T Consensus 164 ~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L 193 (195)
T PF12761_consen 164 SVREDLDTIEEQVDGLESHLSSKKQELQQL 193 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356677888888999999999999999954
No 421
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=48.67 E-value=4.4e+02 Score=29.71 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 001773 870 DLAAAAERLAECQETILLLGKQLKS 894 (1015)
Q Consensus 870 EIaaAeeKLAEcQeTI~sLEKQLKs 894 (1015)
++..+...+...+..+.....+|..
T Consensus 180 ~~~~~~~~~~~~~~~l~~a~~~l~~ 204 (327)
T TIGR02971 180 DVDLAQAEVKSALEAVQQAEALLEL 204 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5566666677777777777666653
No 422
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=48.49 E-value=2.9e+02 Score=32.91 Aligned_cols=19 Identities=37% Similarity=0.429 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001773 875 AERLAECQETILLLGKQLK 893 (1015)
Q Consensus 875 eeKLAEcQeTI~sLEKQLK 893 (1015)
.+-+..||..|..||-+..
T Consensus 352 qEalEscqtrisKlEl~qq 370 (455)
T KOG3850|consen 352 QEALESCQTRISKLELQQQ 370 (455)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3446667777777766655
No 423
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=48.34 E-value=2.5e+02 Score=28.51 Aligned_cols=35 Identities=29% Similarity=0.364 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001773 814 LLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQ 848 (1015)
Q Consensus 814 eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe 848 (1015)
.|....++++++++.++...+.+.+++.+|+..|=
T Consensus 85 ~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~LY 119 (131)
T KOG1760|consen 85 QLEEKKETLEKEIEELESELESISARMDELKKVLY 119 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666666666666553
No 424
>PRK00295 hypothetical protein; Provisional
Probab=48.28 E-value=1.2e+02 Score=27.49 Aligned_cols=35 Identities=11% Similarity=0.025 Sum_probs=17.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 157 IELLKGNIEQCEREINSAKYELHIVSKELEIRNEE 191 (1015)
Q Consensus 157 i~LLkERIenlEKE~e~LK~EL~~LqeELEil~EE 191 (1015)
+.-|+.|+.+.+..+..|...+..+++++..+...
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~q 41 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQ 41 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555554444433
No 425
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=48.05 E-value=7.4e+02 Score=32.13 Aligned_cols=14 Identities=29% Similarity=0.337 Sum_probs=9.5
Q ss_pred HHHHHHHHHhHHHH
Q 001773 44 EAEALALKNHLESV 57 (1015)
Q Consensus 44 e~e~~~lK~~Le~~ 57 (1015)
|.|+..||+|+=.+
T Consensus 435 e~elekLk~eilKA 448 (762)
T PLN03229 435 EGEVEKLKEQILKA 448 (762)
T ss_pred HHHHHHHHHHHHhc
Confidence 46777777777665
No 426
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=47.85 E-value=3.6e+02 Score=28.42 Aligned_cols=106 Identities=13% Similarity=0.196 Sum_probs=62.1
Q ss_pred hHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHH-----------HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 63 TAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFV-----------LTKTKQWDKIRLEFEAKIANFEQELLRSAAENAT 131 (1015)
Q Consensus 63 ~le~rv~hLd~aLKec~~qlr~~reeqeqki~~~~-----------~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~a 131 (1015)
++...+.+.+.+|.+|-.+.+..++.-. ...+.| ...-..|+..+..+..++..++.++..+
T Consensus 26 ~~r~al~~~~a~~~~~~a~v~~~~~~l~-~~~~ri~~m~~gg~~f~i~~~~~~~~~r~~l~~~~~~~e~~~a~l------ 98 (158)
T PF09486_consen 26 AQRRALAAAEAELAEQQAEVEAARQRLR-AHDARIDAMMTGGAPFSIDEYLALRRYRDVLEERVRAAEAELAAL------ 98 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 3444455555555555555554443322 111211 1233466777777777666665555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 001773 132 LSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKY 176 (1015)
Q Consensus 132 LeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~ 176 (1015)
...++.....|......|.++.+.+.+..+|+..+..-...-..
T Consensus 99 -~~~l~~~~~~ia~~~raIarn~a~id~~~er~~~l~r~~ea~~e 142 (158)
T PF09486_consen 99 -RQALRAAEDEIAATRRAIARNDARIDVCRERIDRLRRAAEAAAE 142 (158)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhHH
Confidence 45556666667777777788888888888888877766554443
No 427
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=47.82 E-value=2.7e+02 Score=26.96 Aligned_cols=32 Identities=19% Similarity=0.254 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 001773 810 AEVNLLRAKIESLENELQDEKMSHHNAMAKCK 841 (1015)
Q Consensus 810 aEl~eLqeKVesLE~ELe~ek~~~eEleaK~k 841 (1015)
.++..+...+..+++++..+...+..+...+.
T Consensus 94 ~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 94 KRLETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444433
No 428
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.63 E-value=4.2e+02 Score=29.16 Aligned_cols=96 Identities=17% Similarity=0.080 Sum_probs=61.6
Q ss_pred chhhHHHHhhhHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001773 20 SAKEDLVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLT 99 (1015)
Q Consensus 20 ~~kd~lvkqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qlr~~reeqeqki~~~~~~ 99 (1015)
..-|.+|++|+|.--.++.--+|.+.++..-++.--+..+..+.. ..-+= .-|++.++...
T Consensus 29 ~~~dr~v~~l~ksf~~~~~E~~kee~~y~ea~ri~Ka~L~~Lsq~------------------E~~ml-Ktqrv~e~nlr 89 (222)
T KOG3215|consen 29 DGGDRLVEHLEKSFVLAKAEIEKEEKEYSEAKRIRKALLASLSQD------------------EPSML-KTQRVIEMNLR 89 (222)
T ss_pred CCCcHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHhhc------------------ccchH-HHHHHHHHHHH
Confidence 566889999999999999888888866655544422212111111 01011 12466666666
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 100 KTKQWDKIRLEFEAKIANFEQELLRSAAENATLSR 134 (1015)
Q Consensus 100 ~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLee 134 (1015)
..-.++.++.+.+.+|....+.++.++.++.....
T Consensus 90 e~e~~~q~k~Eiersi~~a~~kie~lkkql~eaKi 124 (222)
T KOG3215|consen 90 EIENLVQKKLEIERSIQKARNKIELLKKQLHEAKI 124 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777888888888888877777777766655543
No 429
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=47.48 E-value=3.1e+02 Score=27.61 Aligned_cols=11 Identities=36% Similarity=0.649 Sum_probs=4.9
Q ss_pred HHHhhhHHHHH
Q 001773 25 LVKQHTKVAEE 35 (1015)
Q Consensus 25 lvkqh~kvaee 35 (1015)
++++|..+..+
T Consensus 38 ~l~~~~~~~~e 48 (213)
T cd00176 38 LLKKHEALEAE 48 (213)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 430
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=47.29 E-value=79 Score=35.60 Aligned_cols=82 Identities=26% Similarity=0.235 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 814 LLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCSSEADENKIKQDRDLAAAAERLAECQETILLLGKQLK 893 (1015)
Q Consensus 814 eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~~~~~~lk~q~~kdLKikqEkEIaaAeeKLAEcQeTI~sLEKQLK 893 (1015)
..++++..|......+...++.+++++.+-+.+|+.+...+........-............+-+..=...|..|+.+++
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~rEeeEIreLE~k~~ 256 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRREEEEIRELERKKR 256 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666777777777777777788888776521111000000011111223344556666677888888877
Q ss_pred hc
Q 001773 894 SL 895 (1015)
Q Consensus 894 sL 895 (1015)
.|
T Consensus 257 ~L 258 (259)
T PF08657_consen 257 EL 258 (259)
T ss_pred hc
Confidence 65
No 431
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=47.24 E-value=2.3e+02 Score=26.01 Aligned_cols=41 Identities=22% Similarity=0.287 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 787 AETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQ 827 (1015)
Q Consensus 787 lE~qLk~~~e~~edLesrL~eLeaEl~eLqeKVesLE~ELe 827 (1015)
++.+.+.....|.++...+.....+...|...|..|...+.
T Consensus 19 y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~ 59 (70)
T PF04899_consen 19 YEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQ 59 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444443333
No 432
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=47.17 E-value=4.9e+02 Score=29.80 Aligned_cols=105 Identities=14% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-----------HHHHH
Q 001773 120 QELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSK-----------ELEIR 188 (1015)
Q Consensus 120 keLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~Lqe-----------ELEil 188 (1015)
+++..++.+..++.+.....-+.|.-+.+.+++.+.+..-+..|.+.++.+..+++.++.-+-. +...+
T Consensus 9 a~iae~k~e~sAlhqK~~aKtdairiL~QdLEkfe~Ekd~~a~~aETLeln~ealere~eLlaa~gc~a~~e~gterqdL 88 (389)
T KOG4687|consen 9 AEIAELKKEFSALHQKCGAKTDAIRILGQDLEKFENEKDGLAARAETLELNLEALERELELLAACGCDAKIEFGTERQDL 88 (389)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHhcCCCchhhccchhhHH
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001773 189 NEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLR 224 (1015)
Q Consensus 189 ~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr 224 (1015)
..-++..++.--.+.-...++....+.|-..|.-++
T Consensus 89 aa~i~etkeeNlkLrTd~eaL~dq~adLhgD~elfR 124 (389)
T KOG4687|consen 89 AADIEETKEENLKLRTDREALLDQKADLHGDCELFR 124 (389)
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHhchHHHHH
No 433
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=46.76 E-value=1.4e+02 Score=37.00 Aligned_cols=14 Identities=36% Similarity=0.247 Sum_probs=11.4
Q ss_pred HHHhHhhhccccCC
Q 001773 420 FLEMEKLACLSNDT 433 (1015)
Q Consensus 420 FlEmEkLa~~~~~~ 433 (1015)
-+|||||-.||.=.
T Consensus 255 p~eleklyslp~w~ 268 (907)
T KOG2264|consen 255 PAELEKLYSLPHWR 268 (907)
T ss_pred hHhhhhhhcCcccc
Confidence 78999998888644
No 434
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=46.40 E-value=5.9e+02 Score=33.12 Aligned_cols=20 Identities=15% Similarity=0.134 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 001773 585 QELVAAITQIHDFVLFLGKE 604 (1015)
Q Consensus 585 ~~l~~~~~~i~~~v~~~~~e 604 (1015)
+.++....++..++..++..
T Consensus 389 StfS~~m~~~~~Il~~~~~~ 408 (782)
T PRK00409 389 STFSGHMTNIVRILEKADKN 408 (782)
T ss_pred hHHHHHHHHHHHHHHhCCcC
Confidence 34555555555555554333
No 435
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=46.38 E-value=7.9e+02 Score=31.95 Aligned_cols=102 Identities=16% Similarity=0.157 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhc-----cc-chhhhh-------
Q 001773 797 SYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAV-----CS-SEADEN------- 863 (1015)
Q Consensus 797 ~~edLesrL~eLeaEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~~~~~~l-----k~-q~~kdL------- 863 (1015)
++..++.+-...+.++.+.+..+..+..-+..++.....-..-+.+|..+|..+|...- .. ....++
T Consensus 992 rL~q~eaeR~~~reqlrQ~Q~Q~sqYnqvl~~LksS~~~K~~~l~El~qEl~d~GV~AD~gAeeRA~~RRDELh~~Lst~ 1071 (1480)
T COG3096 992 RLEQAEAERTRAREQLRQHQAQLSQYNQVLASLKSSYDTKKELLNELQQELQDIGVRADSGAEERARIRRDELHAQLSTN 1071 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCcCcchHHHHHHHHHHHHHHHhcc
Confidence 44455555555566666666777777777777777777666777777788887775100 00 011111
Q ss_pred ---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 001773 864 ---KIKQDRDLAAAAERLAECQETILLLGKQLKSLRPQ 898 (1015)
Q Consensus 864 ---KikqEkEIaaAeeKLAEcQeTI~sLEKQLKsLa~~ 898 (1015)
+...|+.|+..+.........|..++++.+.++..
T Consensus 1072 RsRr~~~EkqlT~~E~E~~~L~~~~rK~ErDY~~~Re~ 1109 (1480)
T COG3096 1072 RSRRNQLEKQLTFCEAEMDNLTRKLRKLERDYFEMREQ 1109 (1480)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 44567888888888888888888888888776553
No 436
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=46.24 E-value=1.9e+02 Score=35.19 Aligned_cols=27 Identities=15% Similarity=0.167 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 756 LEMTKSQLYETEQLLAEVKAQLASAQK 782 (1015)
Q Consensus 756 lEel~~qLqelE~~LeELesQLesLqe 782 (1015)
+..+-.++++++.++..|..+-..+++
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~ 87 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKA 87 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444555444444444
No 437
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=46.13 E-value=3.8e+02 Score=28.15 Aligned_cols=44 Identities=18% Similarity=0.320 Sum_probs=30.7
Q ss_pred HHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHH
Q 001773 47 ALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHE 90 (1015)
Q Consensus 47 ~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qlr~~reeqe 90 (1015)
...++..=+....++....++|...=|-+-|..++|-..|++-|
T Consensus 33 ls~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE 76 (159)
T PF04949_consen 33 LSAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELE 76 (159)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34455555666677777777877777777777777777777655
No 438
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=46.03 E-value=1.6e+02 Score=28.62 Aligned_cols=54 Identities=20% Similarity=0.236 Sum_probs=28.5
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 001773 729 KFSLEEFEELKLEKDNLATDLARCTENLEMT--KSQLYETEQLLAEVKAQLASAQK 782 (1015)
Q Consensus 729 ~~s~EeleqLEsEkeelE~eLee~~eklEel--~~qLqelE~~LeELesQLesLqe 782 (1015)
....++++.+...+.....++..+..+++.+ ...+..++-.+.+++-++..+..
T Consensus 31 ~a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~ 86 (106)
T PF10805_consen 31 YAKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSA 86 (106)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3445666666666666655555555555554 44444444444444444444444
No 439
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=45.99 E-value=2.2e+02 Score=25.46 Aligned_cols=42 Identities=17% Similarity=0.258 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 147 SEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIR 188 (1015)
Q Consensus 147 ~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil 188 (1015)
.+++.++.+..-....+++..+..+..|..+|..+.++++.+
T Consensus 17 ~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 17 QEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555555566777777777777777777777765543
No 440
>PLN03188 kinesin-12 family protein; Provisional
Probab=45.93 E-value=9.8e+02 Score=32.92 Aligned_cols=155 Identities=17% Similarity=0.226 Sum_probs=0.0
Q ss_pred hHHHH-----------HHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHH----HHHHhhhHHHH---------HHHHH
Q 001773 40 WEKAE-----------AEALALKNHLESVTLSKLTAEDRAAHLDGALKECM----RQIRNLKEEHE---------QKLQD 95 (1015)
Q Consensus 40 wekae-----------~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~----~qlr~~reeqe---------qki~~ 95 (1015)
|-+|| .|+.+-+...|......-.=.-=...|++||.-.| |=|.++-|=|| ++|++
T Consensus 1056 w~e~es~wislteelr~eles~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~e 1135 (1320)
T PLN03188 1056 WTEAESKWISLAEELRTELDASRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQE 1135 (1320)
T ss_pred HHHHhhhheechHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhh--------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 96 FVLTKTK--------------------QWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEA 155 (1015)
Q Consensus 96 ~~~~~~~--------------------e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEg 155 (1015)
.|..-++ |.--+|.+-|....-+..+-..++.++....++++..-+.++.|. .++.
T Consensus 1136 gi~dvkkaaakag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~----eaee 1211 (1320)
T PLN03188 1136 GIDDVKKAAARAGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLK----EAEE 1211 (1320)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHH----HHHH
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001773 156 EIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEA 201 (1015)
Q Consensus 156 Ei~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaea 201 (1015)
-..+.++|-...+++++.++.+|..+.++ -..|+.-+.+.+++
T Consensus 1212 a~~~a~~r~~~~eqe~~~~~k~~~klkrk---h~~e~~t~~q~~ae 1254 (1320)
T PLN03188 1212 ALTVAQKRAMDAEQEAAEAYKQIDKLKRK---HENEISTLNQLVAE 1254 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhh
No 441
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.84 E-value=1.3e+02 Score=27.75 Aligned_cols=51 Identities=14% Similarity=0.232 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 001773 118 FEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCE 168 (1015)
Q Consensus 118 lEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlE 168 (1015)
+++++..+.....-.+..+++++..+.+....+++...++..+-+|+...+
T Consensus 6 lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~ 56 (72)
T COG2900 6 LEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444444455555666666666666666666666666666666666544
No 442
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=45.83 E-value=3.6e+02 Score=34.30 Aligned_cols=87 Identities=17% Similarity=0.219 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001773 145 KISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLR 224 (1015)
Q Consensus 145 EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr 224 (1015)
++..+++++.+++..+...|+..+.++..-+..+.....++.......-+++........+..-+..-..++..-|+.++
T Consensus 83 ~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~~~q 162 (632)
T PF14817_consen 83 ELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQVEQLQ 162 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666667777777776666666666666666666556655556666666667777777888899999
Q ss_pred hhhhccC
Q 001773 225 GLVRKKL 231 (1015)
Q Consensus 225 ~l~rk~l 231 (1015)
.+-||.-
T Consensus 163 ~~~R~a~ 169 (632)
T PF14817_consen 163 DIQRKAK 169 (632)
T ss_pred HHHhhcc
Confidence 9888753
No 443
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=45.70 E-value=4.1e+02 Score=28.46 Aligned_cols=88 Identities=16% Similarity=0.248 Sum_probs=51.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHh
Q 001773 156 EIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSA-----------EAANKQHMEGVKKIAKLEAECQRLR 224 (1015)
Q Consensus 156 Ei~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsa-----------eal~KQ~lEl~KKLaKLEaEcqrLr 224 (1015)
-..+|.+.+++....|..|..++..+...+..+..++..-.... ..-+..++.+=..+..+.-.+..++
T Consensus 82 vN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr 161 (182)
T PF15035_consen 82 VNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLSSEHSRLLSLWREVVALRRQFAELR 161 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777776666555554443222 2223333344445555556666666
Q ss_pred hhhhccCCChHHHHHhHHHHhhhcC
Q 001773 225 GLVRKKLPGPAALAQMKMEVESLGR 249 (1015)
Q Consensus 225 ~l~rk~lpgpaa~a~mk~ev~~~~~ 249 (1015)
.-+-+- |+.||.|+-..+|
T Consensus 162 ~~Terd------L~~~r~e~~r~~r 180 (182)
T PF15035_consen 162 TATERD------LSDMRAEFARTSR 180 (182)
T ss_pred HHHHhh------HHHHHHHHHHHHc
Confidence 655543 4677777765443
No 444
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=45.64 E-value=2.8e+02 Score=36.31 Aligned_cols=105 Identities=21% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHhhhhHHH-----HHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHH
Q 001773 31 KVAEEAVSGWEKA-----EAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWD 105 (1015)
Q Consensus 31 kvaeeav~gweka-----e~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qlr~~reeqeqki~~~~~~~~~e~e 105 (1015)
||+.||-.|.-|| |+|--.+|++|+......... |.-.|..+++-|.+||=...-|.+.|....+==+
T Consensus 1070 kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~kkr~e~ik~-------~~~~kdK~e~er~~rE~n~s~i~~~V~e~krL~~ 1142 (1189)
T KOG1265|consen 1070 KLLSEAQTNQTKALKESLEKETKELKKKLDKKRMEDIKV-------DKVIKDKAERERRKRELNSSNIKEFVEERKRLAE 1142 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 106 KIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNM 142 (1015)
Q Consensus 106 ~~~~ELEaKLaElEkeLeelkaEl~aLeeqLeelqee 142 (1015)
+.....+.=...-..-|+.+..+-.+++.++...-..
T Consensus 1143 ~~~k~~e~L~k~~~~~leql~e~~kal~~e~~~~~e~ 1179 (1189)
T KOG1265|consen 1143 KQSKRQEQLVKKHLEVLEQLAEEEKALDAEAEQEYEE 1179 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
No 445
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=44.95 E-value=3.9e+02 Score=28.05 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=8.4
Q ss_pred hhHHH--HHHHHHHHHhHHH
Q 001773 39 GWEKA--EAEALALKNHLES 56 (1015)
Q Consensus 39 gweka--e~e~~~lK~~Le~ 56 (1015)
||-.. |+-+.++..-|.+
T Consensus 15 Gft~~QAe~i~~~l~~~l~~ 34 (177)
T PF07798_consen 15 GFTEEQAEAIMKALREVLND 34 (177)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 66444 4444444444443
No 446
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.63 E-value=7.3e+02 Score=31.06 Aligned_cols=190 Identities=18% Similarity=0.195 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 109 LEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIR 188 (1015)
Q Consensus 109 ~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil 188 (1015)
.+...+|...++++..++..++.+...+-+....+..+.+....+.+-+.-+..++..++--++.-++++......|..-
T Consensus 327 rE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkA 406 (654)
T KOG4809|consen 327 RERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKA 406 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666666666666666666555555555555555555444444444444444433322
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHHHHHhHHHHhhhcCCcCCccccCCCCCCCCCCC
Q 001773 189 NEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKMEVESLGRDYGDSRLKRSPVKPTSPHL 268 (1015)
Q Consensus 189 ~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa~a~mk~ev~~~~~~~~~~r~rr~~~~~~~~~~ 268 (1015)
-.-.+..+-. -....++..+.+.+..++.+|....++|-.-| -+--||+.+-+|. +.+. .. ..++
T Consensus 407 h~~~ddar~~-pe~~d~i~~le~e~~~y~de~~kaqaevdrlL-------eilkeveneKnDk-dkki----ae-ler~- 471 (654)
T KOG4809|consen 407 HNIEDDARMN-PEFADQIKQLEKEASYYRDECGKAQAEVDRLL-------EILKEVENEKNDK-DKKI----AE-LERH- 471 (654)
T ss_pred HHhhHhhhcC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhccc-cchh----hh-cCch-
Confidence 2222111111 23445666777788888888888888887655 3445677666653 1111 00 0011
Q ss_pred CCCcccchhhhHhhhhhhHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001773 269 SPVSEFSLDNVQKFQKENEFLTERLLAMEEETKMLKEALAKRNSELQASRNLCA 322 (1015)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~l~~rl~~~eee~k~lke~l~~~~~elq~sr~~~a 322 (1015)
. .....+-.+..-.|....++-..+|-++=+++++=+..++-..+
T Consensus 472 ---~------kdqnkkvaNlkHk~q~Ekkk~aq~lee~rrred~~~d~sqhlq~ 516 (654)
T KOG4809|consen 472 ---M------KDQNKKVANLKHKQQLEKKKNAQLLEEVRRREDSMADNSQHLQI 516 (654)
T ss_pred ---h------hhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 0 00112233445566666666677777777777766665555543
No 447
>PF10304 DUF2411: Domain of unknown function (DUF2411); InterPro: IPR019414 This entry represents a 38 residue domain of unknown function that is found at the extreme C-terminal end of some HEAT repeats.
Probab=44.50 E-value=22 Score=28.29 Aligned_cols=21 Identities=33% Similarity=0.735 Sum_probs=19.1
Q ss_pred chhhHHHHhhhHHHHHHhhhh
Q 001773 20 SAKEDLVKQHTKVAEEAVSGW 40 (1015)
Q Consensus 20 ~~kd~lvkqh~kvaeeav~gw 40 (1015)
+..|.+|++||.+|=|.+-+|
T Consensus 16 ~D~D~lvr~hA~~~Le~Le~~ 36 (36)
T PF10304_consen 16 TDNDDLVREHAQDALEELEAW 36 (36)
T ss_pred hCCcHHHHHHHHHHHHHHhcC
Confidence 677999999999999988887
No 448
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=44.04 E-value=7e+02 Score=30.71 Aligned_cols=15 Identities=13% Similarity=0.049 Sum_probs=6.2
Q ss_pred ChHHHHHhHHHHhhh
Q 001773 233 GPAALAQMKMEVESL 247 (1015)
Q Consensus 233 gpaa~a~mk~ev~~~ 247 (1015)
|--+=-+++.=||..
T Consensus 203 G~WGE~qLerILE~s 217 (475)
T PRK10361 203 GNWGEVVLTRVLEAS 217 (475)
T ss_pred cchHHHHHHHHHHHh
Confidence 433333444444443
No 449
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=44.02 E-value=3.2e+02 Score=29.77 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001773 736 EELKLEKDNLATDLARCTENLEM 758 (1015)
Q Consensus 736 eqLEsEkeelE~eLee~~eklEe 758 (1015)
-.|+.++.+++..+..++...+.
T Consensus 99 vrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 99 VRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 35888888888888877766655
No 450
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=43.94 E-value=5.7e+02 Score=29.59 Aligned_cols=9 Identities=33% Similarity=0.408 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 001773 118 FEQELLRSA 126 (1015)
Q Consensus 118 lEkeLeelk 126 (1015)
++.++..++
T Consensus 189 ae~~l~~fr 197 (362)
T TIGR01010 189 TKAELLKYQ 197 (362)
T ss_pred HHHHHHHHH
Confidence 333333333
No 451
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=43.62 E-value=3e+02 Score=26.36 Aligned_cols=33 Identities=12% Similarity=0.243 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001773 810 AEVNLLRAKIESLENELQDEKMSHHNAMAKCKE 842 (1015)
Q Consensus 810 aEl~eLqeKVesLE~ELe~ek~~~eEleaK~ke 842 (1015)
.++..+...|..|+.-...+..-+..++.|++.
T Consensus 66 ~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 66 QQIDQIEEQVTELEQTVYELDEYSKELESKFKK 98 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444445555555555555555555555543
No 452
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.55 E-value=1.8e+02 Score=33.38 Aligned_cols=64 Identities=19% Similarity=0.248 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hccCCChH
Q 001773 162 GNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLV--RKKLPGPA 235 (1015)
Q Consensus 162 ERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~--rk~lpgpa 235 (1015)
..+..+..+..++.+.+..++.+ +-+.+..+...+-.+...+.+++.++..+..+| |+.+++|.
T Consensus 136 ~~~~~l~~~va~v~q~~~~qq~E----------ls~~L~~l~~~~~~~s~~~~k~esei~~Ik~lvln~~~f~~p~ 201 (300)
T KOG2629|consen 136 KSLNALMDEVAQVSQLLATQQSE----------LSRALASLKNTLVQLSRNIEKLESEINTIKQLVLNMSNFAPPV 201 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcccccCCCC
Confidence 34444444444444444444443 222333333334466677888888888887766 44444444
No 453
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=42.69 E-value=1.7e+02 Score=28.75 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001773 755 NLEMTKSQLYETEQLLAEVKA 775 (1015)
Q Consensus 755 klEel~~qLqelE~~LeELes 775 (1015)
+++.+..++..+...+++++.
T Consensus 14 ~i~~l~~~i~~l~~~i~e~~~ 34 (126)
T TIGR00293 14 QVESLQAQIAALRALIAELET 34 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 454
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=42.55 E-value=1.6e+02 Score=30.69 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=16.0
Q ss_pred HHHHHHHHHhccCCCcccCCCCc
Q 001773 885 ILLLGKQLKSLRPQSEVIGSPYS 907 (1015)
Q Consensus 885 I~sLEKQLKsLa~~~e~~~~~~~ 907 (1015)
+.-|..||+.|+....+|+-+..
T Consensus 118 ~~Gldeqi~~lkes~~yLF~~~~ 140 (155)
T PF06810_consen 118 LKGLDEQIKALKESDPYLFEEEE 140 (155)
T ss_pred cccHHHHHHHHHhcCchhccCCc
Confidence 66677888888877666666433
No 455
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=42.48 E-value=1e+03 Score=32.07 Aligned_cols=28 Identities=7% Similarity=0.177 Sum_probs=13.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhHHH
Q 001773 289 LTERLLAMEEETKMLKEALAKRNSELQA 316 (1015)
Q Consensus 289 l~~rl~~~eee~k~lke~l~~~~~elq~ 316 (1015)
+...+...+.+-..+...+..-...|..
T Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 854 (1047)
T PRK10246 827 IQQELAQLAQQLRENTTRQGEIRQQLKQ 854 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555544444444443
No 456
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=42.34 E-value=73 Score=27.96 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001773 808 LEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKE 842 (1015)
Q Consensus 808 LeaEl~eLqeKVesLE~ELe~ek~~~eEleaK~ke 842 (1015)
++.++-.+...+.+++.|++.++...+++...+++
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433
No 457
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=42.27 E-value=6.6e+02 Score=32.64 Aligned_cols=9 Identities=22% Similarity=0.154 Sum_probs=4.3
Q ss_pred CCCcccccc
Q 001773 995 TPEKSSRGF 1003 (1015)
Q Consensus 995 ~~~~~~~~~ 1003 (1015)
.++=.-||+
T Consensus 693 ~~~ldl~G~ 701 (771)
T TIGR01069 693 SLTLDLRGQ 701 (771)
T ss_pred CceEECCCC
Confidence 334444554
No 458
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=42.06 E-value=8.7e+02 Score=31.23 Aligned_cols=97 Identities=12% Similarity=0.035 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHH-HHHH
Q 001773 734 EFEELKLEKDNLATDLARCTENLEMTKSQLYETE-QLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQE-LEAE 811 (1015)
Q Consensus 734 eleqLEsEkeelE~eLee~~eklEel~~qLqelE-~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~e-LeaE 811 (1015)
++-.|++.+.=++.-|..+=.+|++-+.+..... ...++|......+......++.+++.++.++-+ .+-.. .+--
T Consensus 200 ~ll~L~arm~PLraSLdfLP~Ri~~F~~ra~~~fp~a~e~L~~r~~~L~~k~~~L~~e~~~LK~ELie--dRW~~vFr~l 277 (683)
T PF08580_consen 200 SLLALFARMQPLRASLDFLPMRIEEFQSRAESIFPSACEELEDRYERLEKKWKKLEKEAESLKKELIE--DRWNIVFRNL 277 (683)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHH
Confidence 3445555555555555544455555554443333 233444444444444333344444433322211 11111 1234
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 001773 812 VNLLRAKIESLENELQDEKMS 832 (1015)
Q Consensus 812 l~eLqeKVesLE~ELe~ek~~ 832 (1015)
.++++..+++++..+.+++..
T Consensus 278 ~~q~~~m~esver~~~kl~~~ 298 (683)
T PF08580_consen 278 GRQAQKMCESVERSLSKLQEA 298 (683)
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 455666666777777666655
No 459
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=42.03 E-value=2.4e+02 Score=29.63 Aligned_cols=20 Identities=10% Similarity=0.019 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHHhhhh
Q 001773 833 HHNAMAKCKELEEQLQRNEN 852 (1015)
Q Consensus 833 ~eEleaK~keLEeQLe~~~~ 852 (1015)
.+++..++.+++.-++.++.
T Consensus 117 veel~eqV~el~~i~emv~~ 136 (157)
T COG3352 117 VEELEEQVNELKMIVEMVIK 136 (157)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 45555555566555555443
No 460
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=41.51 E-value=5.9e+02 Score=29.11 Aligned_cols=21 Identities=33% Similarity=0.237 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q 001773 876 ERLAECQETILLLGKQLKSLR 896 (1015)
Q Consensus 876 eKLAEcQeTI~sLEKQLKsLa 896 (1015)
-.++|.+.-|...|+.|=.+=
T Consensus 208 ~E~aEK~~Ila~~gk~Ll~ll 228 (271)
T PF13805_consen 208 IERAEKQAILAEYGKRLLELL 228 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 568889999999999997664
No 461
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=41.28 E-value=16 Score=35.68 Aligned_cols=79 Identities=11% Similarity=0.019 Sum_probs=6.0
Q ss_pred HhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 52 NHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENA 130 (1015)
Q Consensus 52 ~~Le~~~~q~~~le~rv~hLd~aLKec~~qlr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~ 130 (1015)
.+...+..++..|+.++.++...-..+-+.|-.++..-++....+-.....-+...+.+...-+.++..++..+..+..
T Consensus 39 ~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~~~~~~A~~eA~~i~~~A~~~a~~i~~~A~~~~~~l~~~~~ 117 (131)
T PF05103_consen 39 RENAELKEEIEELQAQLEELREEEESLQRALIQAQETADEIKAEAEEEAEEIIEEAQKEAEEIIEEARAEAERLREEIE 117 (131)
T ss_dssp HHHHHHHHHHHCCCCT---------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444333333333334444444444333343333333444444444444444444444433333
No 462
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=41.23 E-value=4.3e+02 Score=28.04 Aligned_cols=51 Identities=18% Similarity=0.272 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh
Q 001773 802 ETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNEN 852 (1015)
Q Consensus 802 esrL~eLeaEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~~~~ 852 (1015)
......++.++..++.++..|+.+++.+...+..++..++.|=.-|.+...
T Consensus 103 ~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARk 153 (161)
T TIGR02894 103 QKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARK 153 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444556666666666666666666666667777777776666666543
No 463
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=40.95 E-value=1.1e+02 Score=34.46 Aligned_cols=25 Identities=16% Similarity=0.249 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Q 001773 820 ESLENELQDEKMSHHNAMAKCKELE 844 (1015)
Q Consensus 820 esLE~ELe~ek~~~eEleaK~keLE 844 (1015)
...+..|+.+...+++|++++.+||
T Consensus 235 ~~~de~I~rEeeEIreLE~k~~~Lq 259 (259)
T PF08657_consen 235 VDTDEDIRREEEEIRELERKKRELQ 259 (259)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3566677777777777777777664
No 464
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=40.81 E-value=4.7e+02 Score=27.74 Aligned_cols=43 Identities=12% Similarity=-0.011 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 001773 167 CEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEG 209 (1015)
Q Consensus 167 lEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl 209 (1015)
+..++..|+.++..++++.+.+..+...+.+........+..+
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L 144 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTL 144 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555444444444444444444444333333
No 465
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=40.79 E-value=3.6e+02 Score=26.47 Aligned_cols=31 Identities=23% Similarity=0.314 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001773 817 AKIESLENELQDEKMSHHNAMAKCKELEEQL 847 (1015)
Q Consensus 817 eKVesLE~ELe~ek~~~eEleaK~keLEeQL 847 (1015)
.++..|+..+..+...+..+..++..++..|
T Consensus 94 ~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l 124 (129)
T cd00584 94 KKIEELTKQIEKLQKELAKLKDQINTLEAEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 466
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=40.64 E-value=5.9e+02 Score=28.89 Aligned_cols=46 Identities=22% Similarity=0.310 Sum_probs=25.9
Q ss_pred HHhhhHHHHHHhhhhHHHHHHH-HHHHHhHHHHhhhhhhHHHHHhhh
Q 001773 26 VKQHTKVAEEAVSGWEKAEAEA-LALKNHLESVTLSKLTAEDRAAHL 71 (1015)
Q Consensus 26 vkqh~kvaeeav~gwekae~e~-~~lK~~Le~~~~q~~~le~rv~hL 71 (1015)
.|||.--+.|-.--+----+|+ +.|..||+.+..++..|+-|+..|
T Consensus 25 ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl 71 (333)
T KOG1853|consen 25 YKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRL 71 (333)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677766666554333222222 124567777777777777766554
No 467
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=40.50 E-value=2e+02 Score=35.09 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=9.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHh
Q 001773 81 QIRNLKEEHEQKLQDFVLTKT 101 (1015)
Q Consensus 81 qlr~~reeqeqki~~~~~~~~ 101 (1015)
+||.-...-.++|+.+|....
T Consensus 91 ~L~~r~~~id~~i~~av~~~~ 111 (472)
T TIGR03752 91 RLQKREQSIDQQIQQAVQSET 111 (472)
T ss_pred HHHHhhhhHHHHHHHHHHhhh
Confidence 333333333455555544333
No 468
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=40.39 E-value=2.9e+02 Score=25.50 Aligned_cols=35 Identities=20% Similarity=0.191 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001773 162 GNIEQCEREINSAKYELHIVSKELEIRNEEKNMSM 196 (1015)
Q Consensus 162 ERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~ 196 (1015)
+..+.+.+++-.|+.++..+..+++.+...+....
T Consensus 36 ~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~ 70 (75)
T PF07989_consen 36 ESIEELLKENIELKVEVESLKRELQEKKKLLKEAE 70 (75)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666666666666555555444443
No 469
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=40.29 E-value=1e+03 Score=31.51 Aligned_cols=66 Identities=17% Similarity=0.226 Sum_probs=35.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 155 AEIELLKGNIEQCEREINSAKYELHIVSKELEIRNE--EKNMSMRSAEAANKQHMEGVKKIAKLEAEC 220 (1015)
Q Consensus 155 gEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~E--Ele~s~qsaeal~KQ~lEl~KKLaKLEaEc 220 (1015)
-+...+.+.++.+..+...+..++..+..+++.+.. ....++.....+..++.+..++.+.+..-.
T Consensus 774 ~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~lE~g~~~a~lr~~~~slk~~l~e~ar~Wasl~~~~ 841 (984)
T COG4717 774 EELALLEEAIDALDEEVEELHAQVAALSRQIAQLEGGGTVAELRQRRESLKEDLEEKARKWASLRLAV 841 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555544 444455555555555555555555554444
No 470
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=40.17 E-value=1.8e+02 Score=28.87 Aligned_cols=36 Identities=19% Similarity=0.410 Sum_probs=24.8
Q ss_pred HhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001773 83 RNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANF 118 (1015)
Q Consensus 83 r~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaEl 118 (1015)
..++++....+.++.......|+++...++.++..+
T Consensus 51 ~~~~e~~~~~~~~~~~~~~~~~~~le~~~~~~v~~~ 86 (118)
T TIGR01837 51 DAAREEVKTALEQTRDQVQRNWDKLEKAFDERVEQA 86 (118)
T ss_pred HHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 445577777777776666677887777777766655
No 471
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=40.10 E-value=2.5e+02 Score=32.83 Aligned_cols=13 Identities=15% Similarity=0.164 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 001773 835 NAMAKCKELEEQL 847 (1015)
Q Consensus 835 EleaK~keLEeQL 847 (1015)
+....+.+.+.-+
T Consensus 79 ~r~~~l~DmEa~L 91 (330)
T PF07851_consen 79 ERRCQLFDMEAFL 91 (330)
T ss_pred HHHhhHHHHHhhC
Confidence 3333344444433
No 472
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=39.27 E-value=9.9e+02 Score=31.07 Aligned_cols=81 Identities=23% Similarity=0.283 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHhhhhhhccc--chhhhh--hhhhHHHHHHHHHHHHHHHHHHHH
Q 001773 815 LRAKIESLENELQDEKM---SHHNAMAKCKELEEQLQRNENCAVCS--SEADEN--KIKQDRDLAAAAERLAECQETILL 887 (1015)
Q Consensus 815 LqeKVesLE~ELe~ek~---~~eEleaK~keLEeQLe~~~~~~lk~--q~~kdL--KikqEkEIaaAeeKLAEcQeTI~s 887 (1015)
..+||+.|+++|...=. .+.++..+++.|+.++...++..-.. +....| .|++ .|+.| =...++++...+
T Consensus 647 ~k~KIe~L~~eIkkkIe~av~ss~LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~qik~--~~~~a-~~~~~lkek~e~ 723 (762)
T PLN03229 647 LQEKIESLNEEINKKIERVIRSSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQ--KIAEA-LNSSELKEKFEE 723 (762)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHH--HHHHH-hccHhHHHHHHH
Confidence 47788888888865432 34588999999999997666521111 121222 2233 45444 234556666667
Q ss_pred HHHHHHhccCC
Q 001773 888 LGKQLKSLRPQ 898 (1015)
Q Consensus 888 LEKQLKsLa~~ 898 (1015)
|...|.+.+-.
T Consensus 724 l~~e~~~~~~~ 734 (762)
T PLN03229 724 LEAELAAARET 734 (762)
T ss_pred HHHHHHHhhcc
Confidence 77777665443
No 473
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=39.26 E-value=5.1e+02 Score=31.52 Aligned_cols=30 Identities=13% Similarity=0.051 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 001773 868 DRDLAAAAERLAECQETILLLGKQLKSLRP 897 (1015)
Q Consensus 868 EkEIaaAeeKLAEcQeTI~sLEKQLKsLa~ 897 (1015)
++.++.|-.-|...|.+...--+-|.....
T Consensus 364 e~~y~sAlaaLE~AR~EA~RQ~~YL~~iv~ 393 (434)
T PRK15178 364 KARWESALQTLQQGKLQALRERQYLLIISQ 393 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhheeeeeC
Confidence 445666666677777777654444444433
No 474
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=38.74 E-value=5.6e+02 Score=28.07 Aligned_cols=112 Identities=15% Similarity=0.239 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HhhhHHHHHHHHHHHHHHHhhhh-
Q 001773 787 AETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDE-------------KMSHHNAMAKCKELEEQLQRNEN- 852 (1015)
Q Consensus 787 lE~qLk~~~e~~edLesrL~eLeaEl~eLqeKVesLE~ELe~e-------------k~~~eEleaK~keLEeQLe~~~~- 852 (1015)
++..++.+...|+...........++...+..-+.|=.|++.+ ..++.....++.+|=.-|.+.+.
T Consensus 62 Le~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~Va~ALF~EWe~EL~~Y~~~sLR~~S~~kL~~tr~~Y~~L~~aM~~Ae~k 141 (201)
T PF11172_consen 62 LEDKYNALNDEYESSEDAAEEVSDRIDAVEDVADALFDEWEQELDQYSNASLRRASEQKLAETRRRYAQLIKAMRRAESK 141 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444454444444444444444444444444444433 22334555566666555555554
Q ss_pred --hhcccchhhhhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 001773 853 --CAVCSSEADENKIK---QDRDLAAAAERLAECQETILLLGKQLKSLRPQ 898 (1015)
Q Consensus 853 --~~lk~q~~kdLKik---qEkEIaaAeeKLAEcQeTI~sLEKQLKsLa~~ 898 (1015)
..+..-.+.++=.+ .=..|+.+.+.+...+..|..|-+++.+--.+
T Consensus 142 m~PVL~~~~D~vL~LKHNLNA~AI~sL~~e~~~~~~di~~Li~~m~~sI~e 192 (201)
T PF11172_consen 142 MQPVLAAFRDQVLYLKHNLNAQAIASLQGEFSSIESDISQLIKEMERSIAE 192 (201)
T ss_pred cChHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222333344111 23478888888888888888888877654333
No 475
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=38.71 E-value=2.3e+02 Score=32.95 Aligned_cols=86 Identities=10% Similarity=0.039 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001773 753 TENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMS 832 (1015)
Q Consensus 753 ~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLeaEl~eLqeKVesLE~ELe~ek~~ 832 (1015)
++++.........+.+....|==|...|+..+.+.+++|..-. -++.++..+++.+..-++.| ..+
T Consensus 125 eekykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~-------Re~eek~kE~er~Kh~~s~L-------q~~ 190 (405)
T KOG2010|consen 125 EEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESY-------RENEEKSKELERQKHMCSVL-------QHK 190 (405)
T ss_pred HHHHHHHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH-------HHH
Confidence 3333333333333333333444444455554444444443222 22333334444444444333 333
Q ss_pred hHHHHHHHHHHHHHHHhhhh
Q 001773 833 HHNAMAKCKELEEQLQRNEN 852 (1015)
Q Consensus 833 ~eEleaK~keLEeQLe~~~~ 852 (1015)
.+++...+.+-.+=|+.+|.
T Consensus 191 ~~elKe~l~QRdeliee~Gl 210 (405)
T KOG2010|consen 191 MEELKEGLRQRDELIEEHGL 210 (405)
T ss_pred HHHHHHHHHHHHHHHHHcCe
Confidence 34444445555555555553
No 476
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=38.43 E-value=1e+02 Score=27.13 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=8.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhH
Q 001773 776 QLASAQKSNSLAETQLKCMAESY 798 (1015)
Q Consensus 776 QLesLqeS~selE~qLk~~~e~~ 798 (1015)
+++.+.+++..++..++.+-..|
T Consensus 22 en~~i~~~ve~i~envk~ll~lY 44 (55)
T PF05377_consen 22 ENEEISESVEKIEENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 477
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=37.92 E-value=7.4e+02 Score=29.20 Aligned_cols=64 Identities=16% Similarity=0.089 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 755 NLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLEN 824 (1015)
Q Consensus 755 klEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLeaEl~eLqeKVesLE~ 824 (1015)
....+......++..+..+..|++.+-..+.++|.++-. -.-..|++.++.|.+|+..+..++.
T Consensus 145 ~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~------KF~~vLNeKK~KIR~lq~~L~~~~~ 208 (342)
T PF06632_consen 145 ENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYA------KFVLVLNEKKAKIRELQRLLASAKE 208 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhHHHHHHHHHHHHHHhhc
Confidence 333444444445555556666666665555555555421 1223455555555555555555443
No 478
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=37.82 E-value=2.3e+02 Score=25.45 Aligned_cols=11 Identities=18% Similarity=0.459 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 001773 812 VNLLRAKIESL 822 (1015)
Q Consensus 812 l~eLqeKVesL 822 (1015)
+......+..|
T Consensus 63 l~~yr~~l~~l 73 (79)
T PF05008_consen 63 LRSYRSELKKL 73 (79)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 479
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=37.75 E-value=2.9e+02 Score=34.46 Aligned_cols=57 Identities=21% Similarity=0.330 Sum_probs=26.3
Q ss_pred CCCCcccccccchhhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 712 PDDGSIVAAYESETTACKFSLEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKA 775 (1015)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~s~EeleqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELes 775 (1015)
|+...+..+.+.+| .+.+++++..++..+.........+. ....+.+.++++++|+.
T Consensus 149 p~~~eil~~~~L~T------~~~~~~~~~~~k~~~~~w~~~~~~Lp-~~~~~~~yk~~v~~i~~ 205 (555)
T TIGR03545 149 PDPRALLKGEDLKT------VETAEEIEKSLKAMQQKWKKRKKDLP-NKQDLEEYKKRLEAIKK 205 (555)
T ss_pred CCHHHHhccCCCCc------HHHHHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHh
Confidence 34445555555533 34555666555555555544443333 23344444444444433
No 480
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=37.74 E-value=9.3e+02 Score=30.30 Aligned_cols=194 Identities=16% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHH-HHHHHHHHHhhhHHHH-----HHHHHHHHHHhhhHH--
Q 001773 34 EEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGA-LKECMRQIRNLKEEHE-----QKLQDFVLTKTKQWD-- 105 (1015)
Q Consensus 34 eeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~a-LKec~~qlr~~reeqe-----qki~~~~~~~~~e~e-- 105 (1015)
.++..-|.+++.++..++..-....++.--|+=++..|+.+ |+.- +-..+.+++. .++.+++.....-+.
T Consensus 160 ~~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~g--E~e~L~~e~~rLsn~ekl~~~~~~a~~~L~ge 237 (557)
T COG0497 160 QEAYQAWKQARRELEDLQEKERERAQRADLLQFQLEELEELNLQPG--EDEELEEERKRLSNSEKLAEAIQNALELLSGE 237 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc--hHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC
Q ss_pred ----HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 001773 106 ----KIRLEFEAKIANF------EQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAK 175 (1015)
Q Consensus 106 ----~~~~ELEaKLaEl------EkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK 175 (1015)
.+-..+-..+..+ ...+..+...+...--++++...++...-..++---.++.-..+|+..+..-...+.
T Consensus 238 ~~~~~~~~~l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~ 317 (557)
T COG0497 238 DDTVSALSLLGRALEALEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYG 317 (557)
T ss_pred CCchhHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhC
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 001773 176 YELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRK 229 (1015)
Q Consensus 176 ~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk 229 (1015)
-.+..+-+-.+.+.++++.+...-.....-..+...--+++...+..|...=++
T Consensus 318 ~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~ 371 (557)
T COG0497 318 VTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKK 371 (557)
T ss_pred CCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 481
>PHA03011 hypothetical protein; Provisional
Probab=37.58 E-value=1.7e+02 Score=28.64 Aligned_cols=60 Identities=28% Similarity=0.348 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001773 788 ETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQL 847 (1015)
Q Consensus 788 E~qLk~~~e~~edLesrL~eLeaEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQL 847 (1015)
+.++....+.++++-.|++.+..|...+.+.+.-++.=++.-.....-+.+++.+|++++
T Consensus 56 ~GD~Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~ni 115 (120)
T PHA03011 56 EGDINAIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENI 115 (120)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
No 482
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=37.50 E-value=5.2e+02 Score=32.87 Aligned_cols=143 Identities=20% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-
Q 001773 105 DKIRLEFEAKIANFEQ----ELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELH- 179 (1015)
Q Consensus 105 e~~~~ELEaKLaElEk----eLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~- 179 (1015)
+.+...|..+|..++. .+.........+...++....++.++...+.....++..+.+.+++.+..+.-|+-+..
T Consensus 4 d~~~~~L~~eL~~le~~ni~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N 83 (701)
T PF09763_consen 4 DAFEERLSKELSALEAANIHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSAN 83 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHH
Q ss_pred --HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhh------ccCCC---hHHHHHhHHHHhhh
Q 001773 180 --IVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLR-GLVR------KKLPG---PAALAQMKMEVESL 247 (1015)
Q Consensus 180 --~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr-~l~r------k~lpg---paa~a~mk~ev~~~ 247 (1015)
.+.++|+.+-..+......+..+..--......|..+++.+..|. +|.- +.-|| -+|+..=+.+.+.+
T Consensus 84 ~k~L~~eL~~Ll~~l~i~~~~l~~L~~~~l~~~~~l~~~e~a~~~L~~Al~~i~~~~~~~~~~~~~M~Av~er~~~~~~~ 163 (701)
T PF09763_consen 84 QKLLLNELENLLDTLSIPEEHLEALRNASLSSPDGLEKIEEAAEALYKALKAIRPDLEKLDPGLGQMRAVKERREEYEKV 163 (701)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHHHHHH
No 483
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=37.34 E-value=4.9e+02 Score=26.92 Aligned_cols=102 Identities=17% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001773 738 LKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRA 817 (1015)
Q Consensus 738 LEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLeaEl~eLqe 817 (1015)
|-.--.....+|+.+...+......-.++...+..+..-+...+. +.+.-...+......|...- +..++.
T Consensus 27 L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~-------~~~~n~~i~~~~s~~l~~~~--~~~~e~ 97 (146)
T PF08702_consen 27 LDKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQK-------QAKPNDNIYNQYSKSLRKMI--IYILET 97 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH--CHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcccc-------ccCCcccHHHHHHHHHHHHH--HHHHHH
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001773 818 KIESLENELQDEKMSHHNAMAKCKELEEQLQ 848 (1015)
Q Consensus 818 KVesLE~ELe~ek~~~eEleaK~keLEeQLe 848 (1015)
++......|..++.-+.....+|..|+..+.
T Consensus 98 ~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~ 128 (146)
T PF08702_consen 98 KIINQPSNIRVLQNILRSNRQKIQRLEQDID 128 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHhHHHHHHHHHHHHHHHHHHHHHHHH
No 484
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=37.32 E-value=8e+02 Score=29.40 Aligned_cols=114 Identities=13% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 001773 115 IANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIR------ 188 (1015)
Q Consensus 115 LaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil------ 188 (1015)
+.....++...-..+..+...++.+-+.+....++++..+.-+.++.+-+.-.+..+.-++.-...-.......
T Consensus 134 ~~~~~~~~~~~~q~lq~~~~~~er~~~~y~~~~qElq~k~t~~~afn~tikife~q~~~~e~~~ka~~d~~~~eqG~qg~ 213 (464)
T KOG4637|consen 134 INAVGKKLREYHQQLQEKSLEYERLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQCGTQENLSKAYIDRFRREQGSQGN 213 (464)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHhccCCc
Q ss_pred -HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001773 189 -NEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVR 228 (1015)
Q Consensus 189 -~EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~r 228 (1015)
..++....-..+.+...+.+....+..++..++.+-.+.|
T Consensus 214 ~e~~~~~~a~N~~~~ks~i~ei~~sl~~l~d~lk~~~q~~~ 254 (464)
T KOG4637|consen 214 SEKEIGRIANNYDKLKSRIREIHDSLTRLEDDLKALIQALR 254 (464)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
No 485
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=37.07 E-value=4.4e+02 Score=26.39 Aligned_cols=97 Identities=15% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---------------HHHHHHHHHHHHHHHHHHH
Q 001773 125 SAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCERE---------------INSAKYELHIVSKELEIRN 189 (1015)
Q Consensus 125 lkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE---------------~e~LK~EL~~LqeELEil~ 189 (1015)
+...+...-..++.++..+......+.+++.++.-.+-=++.+..- ...|.+--....++++.+.
T Consensus 3 ~~~kmee~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~nV~kRlefI~ 82 (120)
T KOG3478|consen 3 LQKKMEEEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEARTNVGKRLEFIS 82 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHhhHHHHHHHHH
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 190 EEKNMSMRSAEAANKQHMEGVKKIAKLEAECQ 221 (1015)
Q Consensus 190 EEle~s~qsaeal~KQ~lEl~KKLaKLEaEcq 221 (1015)
.|+..+..++...+++.......+.++.+.|+
T Consensus 83 ~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~q 114 (120)
T KOG3478|consen 83 KEIKRLENQIRDSQEEFEKQREAVIKLQQAAQ 114 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 486
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=37.02 E-value=4.9e+02 Score=26.82 Aligned_cols=80 Identities=13% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001773 125 SAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANK 204 (1015)
Q Consensus 125 lkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~K 204 (1015)
...++..+...++..+..+......+....+++..+.......+.....|...+......+..++..++.+...-+.+..
T Consensus 17 ~~~~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~ 96 (135)
T TIGR03495 17 QSQRLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRR 96 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
No 487
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=36.75 E-value=7.7e+02 Score=29.08 Aligned_cols=157 Identities=14% Similarity=0.105 Sum_probs=0.0
Q ss_pred HhhhhhhHHHHHhhhh-----------------------HHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001773 57 VTLSKLTAEDRAAHLD-----------------------GALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEA 113 (1015)
Q Consensus 57 ~~~q~~~le~rv~hLd-----------------------~aLKec~~qlr~~reeqeqki~~~~~~~~~e~e~~~~ELEa 113 (1015)
...+.+.|+.|+++|| .+|..--++|..+...+=..|..-|..-.++.+.+......
T Consensus 207 ~la~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~~~~~ 286 (388)
T PF04912_consen 207 QLARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLLDPAKLDSIERRLKSLLSELEELAEKRKE 286 (388)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcccc
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 114 K--IANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEE 191 (1015)
Q Consensus 114 K--LaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EE 191 (1015)
- ....+.++.++..-+..++.-...+-..+.+|. .+..+=.+..-...++..++.....+..++....+-|..++..
T Consensus 287 ~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~-tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~ 365 (388)
T PF04912_consen 287 AKEDAEQESKIDELYEILPRWDPYAPSLPSLVERLK-TLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEK 365 (388)
T ss_pred ccccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001773 192 KNMSMRSAEAANKQHMEGVKKIAKLEAECQRLR 224 (1015)
Q Consensus 192 le~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr 224 (1015)
......-....+..+++.+..|+
T Consensus 366 ----------~~~N~~~i~~n~~~le~Ri~~L~ 388 (388)
T PF04912_consen 366 ----------FKENMETIEKNVKKLEERIAKLQ 388 (388)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHhccC
No 488
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=36.53 E-value=6.3e+02 Score=27.99 Aligned_cols=221 Identities=12% Similarity=0.115 Sum_probs=0.0
Q ss_pred ChhHHhHHHHHHHHHhhhcchhhHHHHhhhHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHH
Q 001773 1 MEEQIKELNEKLSAANSEISAKEDLVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMR 80 (1015)
Q Consensus 1 l~~~~~~l~ekl~~a~~~~~~kd~lvkqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~ 80 (1015)
|-+=.+-++-.++.++..+-....+|-||..=++. +....++.+..+.-....++.++.++-.-..+-..
T Consensus 4 ~~r~~~~~~a~~~~~~dk~EDp~~~l~Q~ird~~~----------~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~ 73 (225)
T COG1842 4 FSRLKDLVKANINELLDKAEDPEKMLEQAIRDMES----------ELAKARQALAQAIARQKQLERKLEEAQARAEKLEE 73 (225)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 81 QIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELL 160 (1015)
Q Consensus 81 qlr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LL 160 (1015)
+-+.+-.-.+..+-.-+....+.+++....++..+..+......++..+..|...+..+......+.-.....+..-.+.
T Consensus 74 ~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~ 153 (225)
T COG1842 74 KAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVN 153 (225)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCC
Q 001773 161 KGNIEQCEREINSAKYELHIVSKELEIRNEEKNMS-MRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPG 233 (1015)
Q Consensus 161 kERIenlEKE~e~LK~EL~~LqeELEil~EEle~s-~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpg 233 (1015)
..--..-.......-.++.....+.+....-...+ ...-+.+.++...... =......+.++++=+.. -+|
T Consensus 154 ~~~~~~s~~sa~~~fer~e~kiee~ea~a~~~~el~~~~~~dl~~e~a~~~~-~~~v~~~La~lka~~~~-~~~ 225 (225)
T COG1842 154 RSLGGGSSSSAMAAFERMEEKIEEREARAEAAAELAEGSGDDLDKEFAQAGA-QSAVDSRLAALKARMKG-PAG 225 (225)
T ss_pred HHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhHHhhccCcccHHHHHHHhcc-cccHHHHHHHHHHhhcc-CCC
No 489
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.52 E-value=9.6e+02 Score=30.13 Aligned_cols=154 Identities=11% Similarity=0.035 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH---------
Q 001773 739 KLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELE--------- 809 (1015)
Q Consensus 739 EsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLe--------- 809 (1015)
+.=+.....-..+++.-+..++......-+.|.+++.++.++.+--+.++..++...+.-+++..+++.+.
T Consensus 573 EqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~ 652 (741)
T KOG4460|consen 573 EQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPV 652 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCc
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001773 810 --AEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCSSEADENKIKQDRDLAAAAERLAECQETILL 887 (1015)
Q Consensus 810 --aEl~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~~~~~~lk~q~~kdLKikqEkEIaaAeeKLAEcQeTI~s 887 (1015)
.--......+-.+-.+++.+.+.++++.++..+-+.-+..+-....+.+...- +++..-+.+-|++.-..|..
T Consensus 653 l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~Y~l~-----~~Q~~~iqsiL~~L~~~i~~ 727 (741)
T KOG4460|consen 653 LSDAERDFKKELQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKPTYILS-----AYQRKCIQSILKELGEHIRE 727 (741)
T ss_pred chhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccc-----HHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhccC
Q 001773 888 LGKQLKSLRP 897 (1015)
Q Consensus 888 LEKQLKsLa~ 897 (1015)
.-++.|..+.
T Consensus 728 ~~k~VK~i~~ 737 (741)
T KOG4460|consen 728 MVKQVKDIRN 737 (741)
T ss_pred HHHHHHHHHH
No 490
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=36.50 E-value=1.1e+03 Score=30.56 Aligned_cols=481 Identities=21% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001773 41 EKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQ 120 (1015)
Q Consensus 41 ekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qlr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEk 120 (1015)
+|..+.--.|+-|-+...+. |---||+|+.++..+.++-...+.+- -+....+-..-.+.+..+.++.-
T Consensus 193 ekMi~aFEeLR~qAEn~r~E----------M~fKlKE~~~k~~~leeey~~E~n~k-Ekqvs~L~~q~~eKen~~kdl~~ 261 (786)
T PF05483_consen 193 EKMIAAFEELRVQAENDRQE----------MHFKLKEDYEKFEDLEEEYKKEVNDK-EKQVSLLQTQLKEKENKIKDLLL 261 (786)
T ss_pred HHHHHHHHHHHHHHHhHHHH----------HHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHhhHhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001773 121 ELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAE 200 (1015)
Q Consensus 121 eLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsae 200 (1015)
.|.+.+.....|........+.+-+.....+.+..++...+.-++........|.+++....+.+..++++. ...++
T Consensus 262 ~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~eK---e~~~E 338 (786)
T PF05483_consen 262 LLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESESTQKALEEDLQQATKTLIQLTEEK---EAQME 338 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHHHHHhHHHHhhhcCCcCCccccCCCCCCCCCCCCCCcccchhhhH
Q 001773 201 AANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKMEVESLGRDYGDSRLKRSPVKPTSPHLSPVSEFSLDNVQ 280 (1015)
Q Consensus 201 al~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa~a~mk~ev~~~~~~~~~~r~rr~~~~~~~~~~~~~~~~~~~~~~ 280 (1015)
...+-.......++.++.-...|..+++.-
T Consensus 339 e~nk~k~~~s~~v~e~qtti~~L~~lL~~E-------------------------------------------------- 368 (786)
T PF05483_consen 339 ELNKAKAQHSFVVTELQTTICNLKELLTTE-------------------------------------------------- 368 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------------------
Q ss_pred hhhhhhHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHhhhcccCCCCchhhhhhhccccCCC
Q 001773 281 KFQKENEFLTERLLAMEEETKMLKEALAKRNSELQASRNLCAKTASKLQSLEAQMQTSTQQKSPTKSVVQIAAEGYTSQN 360 (1015)
Q Consensus 281 ~~~~~~~~l~~rl~~~eee~k~lke~l~~~~~elq~sr~~~a~t~~kl~~~e~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (1015)
..|+...|+..+.|.-=|.+|++||.
T Consensus 369 ---------qqr~~~~ed~lk~l~~eLqkks~ele--------------------------------------------- 394 (786)
T PF05483_consen 369 ---------QQRLKKNEDQLKILTMELQKKSSELE--------------------------------------------- 394 (786)
T ss_pred ---------HHHHHHhHHHHHHHHHHHHHhhHHHH---------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCcCcchhhHhhhhhhhhhhhhccccccCCCCCCccccccchHHHhHhhhccccCCCCCCccc
Q 001773 361 ASNPPSLTSMSEDDNDDKVSCADSWATALISELSQIKKEKNVEKSNKAETPKHLELMDDFLEMEKLACLSNDTNSNGTIT 440 (1015)
Q Consensus 361 ~s~~~s~~s~s~~~~dd~~s~~~swasalisel~~fk~~k~~~~~~~~~~~~~~~lmDDFlEmEkLa~~~~~~~~~~~~~ 440 (1015)
|.--|++.| ||| |
T Consensus 395 -------------------------------Emtk~k~~k---------------------e~e-l-------------- 407 (786)
T PF05483_consen 395 -------------------------------EMTKQKNNK---------------------EVE-L-------------- 407 (786)
T ss_pred -------------------------------HHHHHhhhh---------------------HHH-H--------------
Q ss_pred cCCCCCCCCCcccccCCCcccccccchhhhhhccCCCcccccccccCCCCCCCCcccCchhhhHHHHHHHHHHHhhcccc
Q 001773 441 ASNGPNNKTSDIVNHDASGAVTSGEDLLSEQQRDMNPSVDKLSSNTQSSTVNPEADAGQPQLMKLRSRISMLLETISKDA 520 (1015)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~e~~~~~~ 520 (1015)
--++.+|....+-.
T Consensus 408 ------------------------------------------------------------------eeL~~~L~e~qkll 421 (786)
T PF05483_consen 408 ------------------------------------------------------------------EELKKILAEKQKLL 421 (786)
T ss_pred ------------------------------------------------------------------HHHHHHHHHHHHHH
Q ss_pred chhHHHHHHHHHhhhhhhhhhcccccccccccCCCcccccccCCCCCCCccchhhhhhhHHHHhHHHHHHHHHHHHHHHh
Q 001773 521 DMGKIVEDIKRVVEDEHVTLHQHSANCISDEVKCSDVSCSAEAYPGDASLNTERKIDLTVQVISQELVAAITQIHDFVLF 600 (1015)
Q Consensus 521 ~~~~il~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~v~~ 600 (1015)
+-.+-++.|...|+.. .+.+.-=|-.-=..+||+=..
T Consensus 422 ~ekk~~eki~E~lq~~-------------------------------------------eqel~~llq~~ekev~dLe~~ 458 (786)
T PF05483_consen 422 DEKKQFEKIAEELQGT-------------------------------------------EQELTGLLQIREKEVHDLEIQ 458 (786)
T ss_pred HHHHHHHHHHHHHHHH-------------------------------------------HHHHHHHHHhhhhHHHHHHHH
Q ss_pred hhhhhhhhcCCC-CchhhHHHHHH-------HHHHHhhhhccchhHHHHHHHHHHHHHHHhhhhhhhcCCCCCcCCCCCc
Q 001773 601 LGKEARAVHDTT-NENGFSQKIEE-------FYVSFNKVIDSNTYLVDFVFALSNVLAKASELRINVMGYKDTEIEPNSP 672 (1015)
Q Consensus 601 ~~~e~~~~~~~~-~~~~l~~~~~~-------f~~~~~~~l~~~~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~e~e~~~~ 672 (1015)
+.-.+..-+..+ ---+|..-|++ ....|+++...+..+..=...++--|-.. .
T Consensus 459 l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~-------------------q 519 (786)
T PF05483_consen 459 LTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQ-------------------Q 519 (786)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH-------------------H
Q ss_pred cccccccccchhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCcccccccchhhhhccCHHHHHHHHHHHHHHHHHHHHH
Q 001773 673 DCIDKVALPENKVIKKDTSGERYPNGCAHISNPTSDPEVPDDGSIVAAYESETTACKFSLEEFEELKLEKDNLATDLARC 752 (1015)
Q Consensus 673 ~~~dk~~~~e~k~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~EeleqLEsEkeelE~eLee~ 752 (1015)
..+.--..-+.+. .-+++.|+.....+.+.++.+
T Consensus 520 edi~~~k~qee~~----------------------------------------------~kqie~Lee~~~~Lrneles~ 553 (786)
T PF05483_consen 520 EDINNSKKQEEKM----------------------------------------------LKQIENLEETNTQLRNELESV 553 (786)
T ss_pred HHHHHHHHHHHHH----------------------------------------------HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001773 753 TENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMS 832 (1015)
Q Consensus 753 ~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLeaEl~eLqeKVesLE~ELe~ek~~ 832 (1015)
...+..... +++..+..-+.-.....-.+...+.+++.+......+..+......-+..++..-..|.+.+..+..+
T Consensus 554 ~eel~~k~~---Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq 630 (786)
T PF05483_consen 554 KEELKQKGE---EVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQ 630 (786)
T ss_pred HHHHHHHHH---HHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001773 833 HHNAMAKCKELEEQLQRNENCAVCSSEADENKIKQDRDLAAAAERLAECQETILLLGKQLKSLR 896 (1015)
Q Consensus 833 ~eEleaK~keLEeQLe~~~~~~lk~q~~kdLKikqEkEIaaAeeKLAEcQeTI~sLEKQLKsLa 896 (1015)
+..+..++..|+.+++.+.. ..+.+.......+......-..|-.++..++
T Consensus 631 ~~~~eikVn~L~~E~e~~kk-------------~~eE~~~~~~keie~K~~~e~~L~~EveK~k 681 (786)
T PF05483_consen 631 SNVYEIKVNKLQEELENLKK-------------KHEEETDKYQKEIESKSISEEELLGEVEKAK 681 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHh-------------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
No 491
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=36.43 E-value=5e+02 Score=30.37 Aligned_cols=81 Identities=11% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001773 138 ERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLE 217 (1015)
Q Consensus 138 elqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaeal~KQ~lEl~KKLaKLE 217 (1015)
+....|..|.++++++..+..+..+|+. .+...++..|..+.++-+.+..|++.+.....+.+.-+.=.++-|..-.
T Consensus 5 ~dk~ri~~li~~la~~~~~~e~~~~~~~---~~~~~~e~~~~~l~~~~~~~~~~~~~~~~qyrecqell~lyq~ylseqq 81 (328)
T PF15369_consen 5 EDKRRIANLIKELARVSEEKEVTEERLK---AEQESFEKKIRQLEEQNELIIKEREDLQQQYRECQELLSLYQKYLSEQQ 81 (328)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q 001773 218 AECQ 221 (1015)
Q Consensus 218 aEcq 221 (1015)
+.+.
T Consensus 82 ~kl~ 85 (328)
T PF15369_consen 82 EKLT 85 (328)
T ss_pred HHHh
No 492
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=36.39 E-value=2.2e+02 Score=29.66 Aligned_cols=74 Identities=15% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhHHHHHHHH----HHHHHHHhh
Q 001773 778 ASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLEN---ELQDEKMSHHNAMAKCK----ELEEQLQRN 850 (1015)
Q Consensus 778 esLqeS~selE~qLk~~~e~~edLesrL~eLeaEl~eLqeKVesLE~---ELe~ek~~~eEleaK~k----eLEeQLe~~ 850 (1015)
+.+..-+.+.-..+......+..+.+++..++.++......|..|+. ..+.++..+.++..+.. +++.+|..+
T Consensus 2 eqi~~Im~~~gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~ 81 (155)
T PF06810_consen 2 EQIDKIMAENGKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQM 81 (155)
T ss_pred hHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred h
Q 001773 851 E 851 (1015)
Q Consensus 851 ~ 851 (1015)
.
T Consensus 82 ~ 82 (155)
T PF06810_consen 82 K 82 (155)
T ss_pred H
No 493
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=36.37 E-value=6e+02 Score=27.69 Aligned_cols=94 Identities=13% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001773 734 EFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVN 813 (1015)
Q Consensus 734 eleqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLeaEl~ 813 (1015)
.|.+--..+...+.+...+..+..-+.-.|...+.....|+..+.-....-...-..-.....+...|+.+-....+++.
T Consensus 92 ~F~~Qt~~LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~ 171 (192)
T PF11180_consen 92 DFAQQTARLADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLR 171 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 001773 814 LLRAKIESLENELQ 827 (1015)
Q Consensus 814 eLqeKVesLE~ELe 827 (1015)
.++..|..|+.+..
T Consensus 172 ~lQ~qv~~Lq~q~~ 185 (192)
T PF11180_consen 172 QLQRQVRQLQRQAN 185 (192)
T ss_pred HHHHHHHHHHHHhc
No 494
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=36.35 E-value=7.4e+02 Score=28.75 Aligned_cols=140 Identities=16% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHH
Q 001773 733 EEFEELKLEKDNLATDLARCTENLEM-----TKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQE 807 (1015)
Q Consensus 733 EeleqLEsEkeelE~eLee~~eklEe-----l~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~e 807 (1015)
...++.+.+-......|.++.+++.. +...+.++...|++.+..+..++..+..++.++......+..-..-...
T Consensus 41 Q~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~ 120 (301)
T PF06120_consen 41 QNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENG 120 (301)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcch
Q ss_pred HHHH----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhcccchhhhhhhhhHHHHHHHHHHHHHHHH
Q 001773 808 LEAE----VNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCSSEADENKIKQDRDLAAAAERLAECQE 883 (1015)
Q Consensus 808 LeaE----l~eLqeKVesLE~ELe~ek~~~eEleaK~keLEeQLe~~~~~~lk~q~~kdLKikqEkEIaaAeeKLAEcQe 883 (1015)
.-+. +.....++..+..+|......+.....+....+..|.... +..+..+..+.++...
T Consensus 121 ~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~~~----------------~~~~~~ir~~~~e~~~ 184 (301)
T PF06120_consen 121 YIINHLMSQADATRKLAEATRELAVAQERLEQMQSKASETQATLNDLT----------------EQRIDLIRQKAAEQAG 184 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHH
Q ss_pred HHHHH
Q 001773 884 TILLL 888 (1015)
Q Consensus 884 TI~sL 888 (1015)
.+.+|
T Consensus 185 ~~~sl 189 (301)
T PF06120_consen 185 AYNSL 189 (301)
T ss_pred HHHHH
No 495
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=36.16 E-value=6.8e+02 Score=28.24 Aligned_cols=118 Identities=14% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHH----------H
Q 001773 734 EFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLE----------T 803 (1015)
Q Consensus 734 eleqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLe----------s 803 (1015)
.+.+.+..+..+...+......+.........+...+..++.++..++..+..++.++......|+-.+ .
T Consensus 56 ~~~~a~a~l~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~g~iS~~ 135 (327)
T TIGR02971 56 ELDVARTQLDEAKARLAQVRAGAKKGEIAAQRAARAAAKLFKDVAAQQATLNRLEAELETAQREVDRYRSLFRDGAVSAS 135 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------------HHHhhhHHHHHHHHHHHHHHHhhh
Q 001773 804 HAQELEAEVNLLRAKIESLENELQ----------------DEKMSHHNAMAKCKELEEQLQRNE 851 (1015)
Q Consensus 804 rL~eLeaEl~eLqeKVesLE~ELe----------------~ek~~~eEleaK~keLEeQLe~~~ 851 (1015)
++...+..+...+..+..++..+. ..........+.+..++.++....
T Consensus 136 ~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~ 199 (327)
T TIGR02971 136 DLDSKALKLRTAEEELEEALASRSEQIDGARAALASLAEEVRETDVDLAQAEVKSALEAVQQAE 199 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHH
No 496
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=35.99 E-value=1.3e+02 Score=36.55 Aligned_cols=59 Identities=12% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001773 105 DKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGN 163 (1015)
Q Consensus 105 e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkER 163 (1015)
.+.-.+.+.+..+++++|+.++.++..+....+..+..|.++..++.+++.++..+...
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~ 126 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGAN 126 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcC
No 497
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=35.94 E-value=2.5e+02 Score=28.59 Aligned_cols=107 Identities=12% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001773 122 LLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEA 201 (1015)
Q Consensus 122 LeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEil~EEle~s~qsaea 201 (1015)
+..+..........+...+..+..+.+.+..+.........|+..+.+....|.+.+-.+-..++++...---+...-+.
T Consensus 32 F~dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~ 111 (141)
T PF13874_consen 32 FEDLKKRVEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEE 111 (141)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHhhhhh
Q 001773 202 ANKQHMEGVKKIAK---LEAECQRLRGLVR 228 (1015)
Q Consensus 202 l~KQ~lEl~KKLaK---LEaEcqrLr~l~r 228 (1015)
+..++..+...+.. +...+..+-+-+|
T Consensus 112 L~~~le~l~~~l~~p~~~~~rl~El~a~l~ 141 (141)
T PF13874_consen 112 LRKRLEALEAQLNAPAQLKGRLNELWAQLR 141 (141)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHcCchhHHHHHHHHHHHhC
No 498
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=35.70 E-value=33 Score=33.33 Aligned_cols=85 Identities=22% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 109 LEFEAKIANFEQELLRSAAENATLSRSL-QERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEI 187 (1015)
Q Consensus 109 ~ELEaKLaElEkeLeelkaEl~aLeeqL-eelqeeI~EL~eeiErlEgEi~LLkERIenlEKE~e~LK~EL~~LqeELEi 187 (1015)
..-......++.....+..++..|...| ++.+.++..-..+...++.....+..++...+..+..|+.++..+...+..
T Consensus 4 ~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~~~ 83 (100)
T PF06428_consen 4 EEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVMES 83 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 001773 188 RNEEKN 193 (1015)
Q Consensus 188 l~EEle 193 (1015)
+..+..
T Consensus 84 ~~~~~~ 89 (100)
T PF06428_consen 84 MESESD 89 (100)
T ss_dssp ------
T ss_pred cccccc
No 499
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=35.68 E-value=8.3e+02 Score=29.14 Aligned_cols=132 Identities=16% Similarity=0.194 Sum_probs=0.0
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhh-HHHHHhhhhHHH-----HHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 001773 30 TKVAEEAVSGWEKAEAEALALKNHLESVTLSKLT-AEDRAAHLDGAL-----KECMRQIRNLKEEHEQKLQDFVLTKTKQ 103 (1015)
Q Consensus 30 ~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~-le~rv~hLd~aL-----Kec~~qlr~~reeqeqki~~~~~~~~~e 103 (1015)
..+||-+|.-|..-...+..+...|..+.+.... .+.++.+|...| .....+.+.--+...+++..++...-..
T Consensus 252 taaae~~~~~~~e~~q~Ld~l~~rL~~a~~~~L~~~~~~L~~L~~rL~~~~P~~~l~~~~q~L~~l~~rL~~a~~~~L~~ 331 (438)
T PRK00286 252 TAAAELAVPDRAELLQRLQQLQQRLARAMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRLQQRLQRALERRLRL 331 (438)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 001773 104 WDKIRLEFEAKIANF--EQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQC 167 (1015)
Q Consensus 104 ~e~~~~ELEaKLaEl--EkeLeelkaEl~aLeeqLeelqeeI~EL~eeiErlEgEi~LLkERIenl 167 (1015)
+...-..+..++..+ ...+...+..+..+...+... +...+.+...++..+..++..+
T Consensus 332 ~~~~L~~l~~rL~~lsP~~~L~r~~qrL~~L~~rL~~a------~~~~L~~~~~rL~~l~~rL~~l 391 (438)
T PRK00286 332 AKQRLERLSQRLQQQNPQRRIERAQQRLEQLEQRLRRA------MRRQLKRKRQRLEALAQQLEAL 391 (438)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhC
No 500
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=35.66 E-value=1.7e+02 Score=35.07 Aligned_cols=79 Identities=23% Similarity=0.304 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001773 749 LARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQD 828 (1015)
Q Consensus 749 Lee~~eklEel~~qLqelE~~LeELesQLesLqeS~selE~qLk~~~e~~edLesrL~eLeaEl~eLqeKVesLE~ELe~ 828 (1015)
...+..++..+..+++.+...+.+++..+..++.... ...........+..+...+..+..++..+..++..|+.+++.
T Consensus 329 ~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 329 RPELKEKLEELEEELEELKEELEKLKKNLKKLKKLKK-QGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Done!