Query 001773
Match_columns 1015
No_of_seqs 275 out of 291
Neff 5.0
Searched_HMMs 29240
Date Tue Mar 26 16:34:32 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001773.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1070-1073//hhsearch_pdb/001773hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 1.0 1 1 66.0 12.4 280 27-338 818-1121(1184)
2 3vkg_A Dynein heavy chain, cyt 1.0 1 1 47.5 26.0 52 45-96 1913-1964(3245)
3 1c1g_A Tropomyosin; contractIl 1.0 1 1 43.5 39.6 53 35-87 17-69 (284)
4 2v71_A Nuclear distribution pr 1.0 1 1 39.4 19.0 127 719-848 3-133 (189)
5 3na7_A HP0958; flagellar bioge 1.0 1 1 39.4 19.8 160 741-900 12-174 (256)
6 3oja_B Anopheles plasmodium-re 1.0 1 1 38.7 14.0 28 870-897 552-579 (597)
7 3oja_B Anopheles plasmodium-re 1.0 1 1 38.1 16.7 12 880-891 569-580 (597)
8 2dfs_A Myosin-5A; myosin-V, in 1.0 1 1 37.6 20.4 168 27-216 910-1077(1080)
9 2b9c_A Striated-muscle alpha t 1.0 1 1 37.0 7.5 143 738-880 1-147 (147)
10 2dfs_A Myosin-5A; myosin-V, in 1.0 1 1 36.8 22.0 200 26-229 838-1048(1080)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=66.02 Aligned_cols=280 Identities=14% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76667889874455777---------------------798999997578886545568778854447998999998865
Q 001773 27 KQHTKVAEEAVSGWEKA---------------------EAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNL 85 (1015)
Q Consensus 27 kqh~kvaeeav~gweka---------------------e~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qlr~~ 85 (1015)
...+.+.+-.+.||-+- +.|...++..|+........+++.+..+...+....+++..+
T Consensus 818 ~~a~~~iQ~~~r~~~~~k~~~~~rl~~klkpLl~~a~~~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l 897 (1184)
T 1i84_S 818 LESIFCIQYNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLL 897 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTTCCCCTHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999987410899999899999973577999999999999999999999999999999999999999999
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67888---888999998766588999999999999999999999999999999999999999999999999999999986
Q 001773 86 KEEHE---QKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKG 162 (1015)
Q Consensus 86 reeqe---qki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeklkaEl~aLeeqLeelqeeI~EL~eeiEklEsEi~LLkE 162 (1015)
+.+.. ..+.++ ......+.....+++.++.+++.+++....++..+...+......+..+...++..+.++.-+..
T Consensus 898 ~~~L~~e~~~l~~~-e~~l~~l~~~~~~Le~~l~ele~elee~ee~l~el~~e~~~le~el~~L~~eleele~~l~~l~~ 976 (1184)
T 1i84_S 898 QEKLQAETELYAEA-EEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQL 976 (1184)
T ss_dssp HHHHTTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------------------
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999-99999999999999999999999999999999999998988999999999999999988888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 59999999999999999999999899999998599999999999999999999999999985323204999289987689
Q 001773 163 NIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKM 242 (1015)
Q Consensus 163 RLenlEKEiesLK~EL~~LqkELEil~EEle~l~ksaeal~KQ~lEl~KKLaKLEaElqrLr~l~rk~lpgpaa~a~mk~ 242 (1015)
.+..++.....++.++..+..++..+..++......+..+..+..+...++..++.+...+..-+..---....+.+-..
T Consensus 977 e~~~le~~l~~l~~el~~lee~l~~l~~e~~~le~~i~~l~~~l~~~e~k~~~lek~~~~le~el~ele~~le~~e~~~~ 1056 (1184)
T 1i84_S 977 EKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQ 1056 (1184)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999888789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99630478677656679999999988887510013567655555789999996799999999999842456778787879
Q 001773 243 EVESLGRDYGDSRLKRSPVKPTSPHLSPVSEFSLDNVQKFQKENEFLTERLLAMEEETKMLKEALAKRNSELQASRNLCA 322 (1015)
Q Consensus 243 ev~~l~~~~~~~r~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~eee~k~lke~l~~k~~elq~sr~~~a 322 (1015)
+++..-+.... +..-+-.++..++.+...|.+.+.....+++..+....
T Consensus 1057 ele~~~~~le~-------------------------------el~~l~~el~el~~el~~le~~l~~le~el~~l~~~le 1105 (1184)
T 1i84_S 1057 ELEKIKRKLEG-------------------------------ESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLE 1105 (1184)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999-------------------------------99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 8545687899987531
Q 001773 323 KTASKLQSLEAQMQTS 338 (1015)
Q Consensus 323 ~t~~kl~~~e~q~~~~ 338 (1015)
.....+..++.++..+
T Consensus 1106 ~l~~~~~~le~~l~~L 1121 (1184)
T 1i84_S 1106 DETSQKNNALKKIREL 1121 (1184)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9998898789999999
No 2
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=47.48 Aligned_cols=52 Identities=19% Similarity=0.159 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9899999757888654556877885444799899999886567888888999
Q 001773 45 AEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDF 96 (1015)
Q Consensus 45 ~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qlr~~reeqeqki~~~ 96 (1015)
.|+...+..|.....+-....+.|..|-.-|.+...+|....++-++.+..+
T Consensus 1913 ~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i 1964 (3245)
T 3vkg_A 1913 DQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQM 1964 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999988999999999999999999998999999999999999999
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=1.00 E-value=1 Score=43.51 Aligned_cols=53 Identities=13% Similarity=0.225 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87445577779899999757888654556877885444799899999886567
Q 001773 35 EAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKE 87 (1015)
Q Consensus 35 eav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qlr~~re 87 (1015)
.+..-|+..+.++..++..++........++..+..+...+.....++..++.
T Consensus 17 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (284)
T 1c1g_A 17 NALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQE 69 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999889888999999999999999999999999999999
No 4
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=1.00 E-value=1 Score=39.41 Aligned_cols=127 Identities=14% Similarity=0.117 Sum_probs=59.8
Q ss_pred CCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00110244300579999999999999999999999999999999999999999999999999985589999999999847
Q 001773 719 AAYESETTACKFSLEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESY 798 (1015)
Q Consensus 719 ~~~~~~~~~~~~s~EeleqLEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLe~LqeS~selE~qLk~l~e~l 798 (1015)
++|.+....+.+-.+.+.++......++.+|.+++.....+. .+++..|..++.++..++..+..+..++.....+|
T Consensus 3 ~~f~s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE---~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~ 79 (189)
T 2v71_A 3 MDFSSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELE---AELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKL 79 (189)
T ss_dssp -CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 888988999999999999999999999999999999899999---99999999999889999999998999999999999
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 879999----99999999999999999999999999631999999999999997
Q 001773 799 RSLETH----AQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQ 848 (1015)
Q Consensus 799 edLesr----L~eleaEi~eLqeKIesLE~ELe~ek~~~eEleaKikeLEeQLe 848 (1015)
...... .+.+..++..+......|...|..+.....+++.+.+....-++
T Consensus 80 ~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~Sle 133 (189)
T 2v71_A 80 EHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLE 133 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999888999999999999999999999999999999971288899989996599
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=1.00 E-value=1 Score=39.38 Aligned_cols=160 Identities=11% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Q ss_conf 99999999999999999999999999999999999999999855899999999998478799999999999999--9999
Q 001773 741 EKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNL--LRAK 818 (1015)
Q Consensus 741 EkeelE~eLee~~eklEel~~qLqelE~~LeELesQLe~LqeS~selE~qLk~l~e~ledLesrL~eleaEi~e--LqeK 818 (1015)
++..+..++..+...+..+...+..++..+..++..+..++..+..++.++......+..+..++...+.++.. -...
T Consensus 12 ~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE 91 (256)
T 3na7_A 12 EISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERE 91 (256)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 99999999999999998758999999999999999999999999999999999997899999999999999872589999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999999999999631999999999999997501111001-2146654323999999999999999999999999871069
Q 001773 819 IESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCS-SEADENKIKQDRDLAAAAERLAECQETILLLGKQLKSLRP 897 (1015)
Q Consensus 819 IesLE~ELe~ek~~~eEleaKikeLEeQLe~~~~~~l~~-~~~keLKikqEkEIaaAaeKLAEcQeTI~sLEKQLKsLa~ 897 (1015)
...|..|++..+.....++.++.++.++++......... ..-..++.......+.....+++.+..+..+..+-..+..
T Consensus 92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~ 171 (256)
T 3na7_A 92 LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVE 171 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred CCC
Q ss_conf 776
Q 001773 898 QSE 900 (1015)
Q Consensus 898 ~~~ 900 (1015)
.-+
T Consensus 172 ~i~ 174 (256)
T 3na7_A 172 KTE 174 (256)
T ss_dssp TSC
T ss_pred CCC
T ss_conf 699
No 6
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=1.00 E-value=1 Score=38.73 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999999999999999871069
Q 001773 870 DLAAAAERLAECQETILLLGKQLKSLRP 897 (1015)
Q Consensus 870 EIaaAaeKLAEcQeTI~sLEKQLKsLa~ 897 (1015)
.+.....++.+.+..+..+..+|+.+..
T Consensus 552 ~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 552 QLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8731014789988889999999999998
No 7
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=1.00 E-value=1 Score=38.11 Aligned_cols=12 Identities=8% Similarity=0.041 Sum_probs=3.9
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q 001773 880 ECQETILLLGKQ 891 (1015)
Q Consensus 880 EcQeTI~sLEKQ 891 (1015)
..+..|..+...
T Consensus 569 ~~~~~~~~l~~~ 580 (597)
T 3oja_B 569 LKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999987
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=1.00 E-value=1 Score=37.64 Aligned_cols=168 Identities=14% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76667889874455777798999997578886545568778854447998999998865678888889999987665889
Q 001773 27 KQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDK 106 (1015)
Q Consensus 27 kqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qlr~~reeqeqki~~~~~~~~~e~e~ 106 (1015)
+.-++..+.-..-.-+-|+.+..|...|++....+..|++++..+...+..-+..|..--++-+.
T Consensus 910 k~ear~~~~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~--------------- 974 (1080)
T 2dfs_A 910 KIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM--------------- 974 (1080)
T ss_dssp -----------------------------------------CHHHHHHHHHHHHHHHHTHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_conf 99998767789998889999999999999999999999999987567899999999999999999---------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999999999986599999999999999999999998
Q 001773 107 IRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELE 186 (1015)
Q Consensus 107 ~~~ELEaKLaElEkeLeklkaEl~aLeeqLeelqeeI~EL~eeiEklEsEi~LLkERLenlEKEiesLK~EL~~LqkELE 186 (1015)
.+.++..++.+...+..++..+...++....+...+.+...+...++. +++.++++++..|+.++..++..+.
T Consensus 975 ----~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~---~kv~~L~~e~~~L~qq~~~l~~~~~ 1047 (1080)
T 2dfs_A 975 ----SEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE---QLVSELKEQNTLLKTEKEELNRRIH 1047 (1080)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ----999999999999999999999999999999999999999999999999---9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999985999999999999999999999
Q 001773 187 IRNEEKNMSMRSAEAANKQHMEGVKKIAKL 216 (1015)
Q Consensus 187 il~EEle~l~ksaeal~KQ~lEl~KKLaKL 216 (1015)
..+++.....+......+..++..-.-...
T Consensus 1048 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1077 (1080)
T 2dfs_A 1048 DQAKEITETMEKKLVEETKQLELDLNDERL 1077 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 988877778888789999999999999998
No 9
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=1.00 E-value=1 Score=36.95 Aligned_cols=143 Identities=17% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999855899999999998478799999999999999999
Q 001773 738 LKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRA 817 (1015)
Q Consensus 738 LEsEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLe~LqeS~selE~qLk~l~e~ledLesrL~eleaEi~eLqe 817 (1015)
|.-.+.-++..|..+...+......|.+++....+.+.-...+...-...+..+..+..+++.+..........+.+...
T Consensus 1 l~Rri~llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~R 80 (147)
T 2b9c_A 1 MNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 80 (147)
T ss_dssp ----------CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 95179999999998999999999999999988877888999887641143899999999999999999998876899998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH----HHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999631999999999999997501111001214665----43239999999999999
Q 001773 818 KIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCSSEADEN----KIKQDRDLAAAAERLAE 880 (1015)
Q Consensus 818 KIesLE~ELe~ek~~~eEleaKikeLEeQLe~~~~~~l~~~~~keL----KikqEkEIaaAaeKLAE 880 (1015)
|+.-++.+++.-.........+|..|+++|..++.+.......... ....+..|..+..+|-+
T Consensus 81 Kl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I~~L~~kLkE 147 (147)
T 2b9c_A 81 KLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVARLKKLVGE 147 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTSCCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999988888889999988998987999999887877766876888888899999999999987549
No 10
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=1.00 E-value=1 Score=36.83 Aligned_cols=200 Identities=14% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87666788987445577779899999757888654556-----------8778854447998999998865678888889
Q 001773 26 VKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLT-----------AEDRAAHLDGALKECMRQIRNLKEEHEQKLQ 94 (1015)
Q Consensus 26 vkqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~-----------le~rv~hLd~aLKec~~qlr~~reeqeqki~ 94 (1015)
++..+-+.+-++.|| .|..+...++..-.+..-|... ....+..+-.+.+-..-.-...+--.+.+..
T Consensus 838 lr~aai~IQs~~Rg~-laRr~~~~lr~~~aav~IQ~~~Rg~l~R~~y~~~~~aai~iQs~~R~~laRr~~~~Lk~ear~~ 916 (1080)
T 2dfs_A 838 MRDATIALQALLRGY-LVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSV 916 (1080)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHTTTC-------
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 988889999999889-9999999999877888999999999999998887766999999999999999999999999876
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998766588999999999999999999999999999999999999999999999999999999986599999999999
Q 001773 95 DFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSA 174 (1015)
Q Consensus 95 ~~~~~~~~e~e~~~~ELEaKLaElEkeLeklkaEl~aLeeqLeelqeeI~EL~eeiEklEsEi~LLkERLenlEKEiesL 174 (1015)
..+.+...+++..-.+++.++.+.+++...+..+...+...+...-..+..-.++.+..+.+..-+++++..++.+++.+
T Consensus 917 ~~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l 996 (1080)
T 2dfs_A 917 ERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKL 996 (1080)
T ss_dssp ----------------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77899988899999999999999999999999999875678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999989999999859999999999999999999999999998532320
Q 001773 175 KYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRK 229 (1015)
Q Consensus 175 K~EL~~LqkELEil~EEle~l~ksaeal~KQ~lEl~KKLaKLEaElqrLr~l~rk 229 (1015)
+.++..+.++.+.+.+...... +.++.+...+.+..++|+.....+...+.+
T Consensus 997 ~~~~~~~~ke~~~lee~~~~~~---~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~ 1048 (1080)
T 2dfs_A 997 RKELHQTQTEKKTIEEWADKYK---HETEQLVSELKEQNTLLKTEKEELNRRIHD 1048 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999---999999999999999999999999999999
Done!