Query 001773
Match_columns 1015
No_of_seqs 275 out of 291
Neff 5.0
Searched_HMMs 13730
Date Tue Mar 26 16:40:11 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001773.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1070-1073//hhsearch_scop/001773hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxka_ a.2.5.1 (A:) Prefoldin 31.8 8.5 0.00062 12.7 13.2 28 821-848 76-103 (107)
2 d1fxkc_ a.2.5.1 (C:) Prefoldin 11.4 24 0.0017 9.6 13.6 29 286-314 90-118 (133)
3 d1ufza_ a.5.9.1 (A:) HBS1-like 9.5 30 0.0022 8.9 4.5 43 65-107 23-68 (83)
4 d1ivsa1 a.2.7.3 (A:797-862) Va 4.5 80 0.0058 6.0 5.0 21 875-895 45-65 (66)
5 d1wu9a1 a.245.1.1 (A:191-249) 3.5 1.1E+02 0.0079 5.1 6.4 39 804-842 2-40 (59)
6 d2efla1 a.238.1.4 (A:1-288) Fo 3.4 1.1E+02 0.0082 5.0 24.6 212 1-220 7-223 (288)
7 d1j8yf1 a.24.13.1 (F:3-86) Sig 3.4 1.1E+02 0.0083 4.9 2.6 32 502-533 2-34 (84)
8 d1sva1_ b.121.6.1 (1:) Polyoma 3.4 1.1E+02 0.0084 4.9 0.1 16 993-1008 259-274 (348)
9 d1vpsa_ b.121.6.1 (A:) Polyoma 3.2 1E+02 0.0076 5.2 -0.4 10 999-1008 267-276 (285)
10 d1r8ja1 a.186.1.1 (A:177-282) 3.0 1.3E+02 0.0095 4.5 0.5 20 413-432 61-80 (106)
No 1
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=31.83 E-value=8.5 Score=12.74 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999631999999999999997
Q 001773 821 SLENELQDEKMSHHNAMAKCKELEEQLQ 848 (1015)
Q Consensus 821 sLE~ELe~ek~~~eEleaKikeLEeQLe 848 (1015)
.++.++.........+..++.+++.+|.
T Consensus 76 ~l~~~i~~l~~q~~~l~~~l~~~~~~l~ 103 (107)
T d1fxka_ 76 TLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999
No 2
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=11.36 E-value=24 Score=9.64 Aligned_cols=29 Identities=14% Similarity=0.118 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 57899999967999999999998424567
Q 001773 286 NEFLTERLLAMEEETKMLKEALAKRNSEL 314 (1015)
Q Consensus 286 ~~~l~~rl~~~eee~k~lke~l~~k~~el 314 (1015)
..|+..|+-.++...+.|...+.+....+
T Consensus 90 ~~~l~~ri~~l~~~~~~l~~~~~~~~~~i 118 (133)
T d1fxkc_ 90 MESIKSQKNELESTLQKMGENLRAITDIM 118 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999
No 3
>d1ufza_ a.5.9.1 (A:) HBS1-like protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.53 E-value=30 Score=8.91 Aligned_cols=43 Identities=19% Similarity=0.389 Sum_probs=27.2
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q ss_conf 7788544479-98999998865678--8888899999876658899
Q 001773 65 EDRAAHLDGA-LKECMRQIRNLKEE--HEQKLQDFVLTKTKQWDKI 107 (1015)
Q Consensus 65 e~rv~hLd~a-LKec~~qlr~~ree--qeqki~~~~~~~~~e~e~~ 107 (1015)
...++.+|.| |-.||+|+|.+--+ -++.+.+++++-.-..+++
T Consensus 23 ~~~Ls~~d~aRL~SCldqmR~VvGDsvpe~~lv~avlk~dydvekA 68 (83)
T d1ufza_ 23 NHQLSEIDQARLYSCLDHMREVLGDAVPDDILTEAILKHKFDVQKA 68 (83)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHTTSCHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHH
T ss_conf 2306978899999999999998765677999999999806789999
No 4
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=4.53 E-value=80 Score=6.03 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999999998710
Q 001773 875 AERLAECQETILLLGKQLKSL 895 (1015)
Q Consensus 875 aeKLAEcQeTI~sLEKQLKsL 895 (1015)
..++.+.+..+..+..+|..|
T Consensus 45 k~kl~~~~~~~~~l~~~l~~L 65 (66)
T d1ivsa1 45 EARLKENLEQAERIREALSQI 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999860
No 5
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.54 E-value=1.1e+02 Score=5.11 Aligned_cols=39 Identities=33% Similarity=0.354 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999631999999999
Q 001773 804 HAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKE 842 (1015)
Q Consensus 804 rL~eleaEi~eLqeKIesLE~ELe~ek~~~eEleaKike 842 (1015)
+...+..++.++...+.++++|.++==..+++++.-|++
T Consensus 2 e~~~L~~ei~elk~~v~~lEkERdFYF~KLRdIEilcQ~ 40 (59)
T d1wu9a1 2 EAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQE 40 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 888999999999999999999998999999999999927
No 6
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.42 E-value=1.1e+02 Score=4.99 Aligned_cols=212 Identities=11% Similarity=0.097 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 92578689999988752122005778766678898744557777989999975788865455687788544479989999
Q 001773 1 MEEQIKELNEKLSAANSEISAKEDLVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMR 80 (1015)
Q Consensus 1 l~~~~k~l~ekl~~a~~~~~~k~~lvkqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~ 80 (1015)
|-+++..|-.+.-...--+..=-.++++-+++-++=..+-.|--......+..-........ +-.++...+.
T Consensus 7 l~d~~~~l~~~~~~~~~~~~~~~~~~~eRa~iE~eYak~L~kl~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 78 (288)
T d2efla1 7 LWDQFDNLEKHTQWGIDILEKYIKFVKERTEIELSYAKQLRNLSKKYQPKKNSKEEEEYKYT--------SCKAFISNLN 78 (288)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC-------CTTSH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--------HHHHHHHHHH
T ss_conf 67789999999998999999999999999999999999999999987511135665444575--------9999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98865678888889999987665889999999999999999999999999999999999999999999999999999999
Q 001773 81 QIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELL 160 (1015)
Q Consensus 81 qlr~~reeqeqki~~~~~~~~~e~e~~~~ELEaKLaElEkeLeklkaEl~aLeeqLeelqeeI~EL~eeiEklEsEi~LL 160 (1015)
+....-+.+..-.................+.+.....+.....++..++......+......+.....+.+.+.......
T Consensus 79 ~~~~~a~~h~~~a~~l~~~i~~~l~~~~~~~~~~~K~~~~~~~k~~k~~~~~~~~l~k~k~~Y~~~~~e~e~~~~~~~~~ 158 (288)
T d2efla1 79 EMNDYAGQHEVISENMASQIIVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKM 158 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999989999999999999999999999999999999999999999999987543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Q ss_conf 8659999999999999999999999899999998599999999999-----99999999999999
Q 001773 161 KGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQH-----MEGVKKIAKLEAEC 220 (1015)
Q Consensus 161 kERLenlEKEiesLK~EL~~LqkELEil~EEle~l~ksaeal~KQ~-----lEl~KKLaKLEaEl 220 (1015)
.............++..........+....+.......+......+ -.....+..++.+.
T Consensus 159 ~~~~~~~~~~~~K~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~~q~~e~~r 223 (288)
T d2efla1 159 DADINVTKADVEKARQQAQIRHQMAEDSKADYSSILQKFNHEQHEYYHTHIPNIFQKIQEMEERR 223 (288)
T ss_dssp HHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 02212126778877889999999998889999999999999999999989999999999899999
No 7
>d1j8yf1 a.24.13.1 (F:3-86) Signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}
Probab=3.38 E-value=1.1e+02 Score=4.94 Aligned_cols=32 Identities=19% Similarity=0.381 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHH
Q ss_conf 567899999988731-03450467799999986
Q 001773 502 LMKLRSRISMLLETI-SKDADMGKIVEDIKRVV 533 (1015)
Q Consensus 502 ~~~l~~~~~~~~e~~-~~~~~~~~il~~ik~~l 533 (1015)
+..|.+.++.+.... .+..++++++.+|+.||
T Consensus 2 ~~~l~~a~~kl~~~~~i~E~~i~~~l~eIr~AL 34 (84)
T d1j8yf1 2 LDNLRDTVRKFLTGSSSYDKAVEDFIKELQKSL 34 (84)
T ss_dssp HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 438999999985789887999999999999999
No 8
>d1sva1_ b.121.6.1 (1:) Polyomavirus coat proteins {Simian virus 40, Sv40 [TaxId: 10633]}
Probab=3.36 E-value=1.1e+02 Score=4.92 Aligned_cols=16 Identities=19% Similarity=0.555 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCC
Q ss_conf 9998866665443234
Q 001773 993 APTPEKSSRGFSRFFS 1008 (1015)
Q Consensus 993 ~~~~~~~~~~~~~~f~ 1008 (1015)
......|-||++|||+
T Consensus 259 ~~~~~~~~rGLpRYF~ 274 (348)
T d1sva1_ 259 NTSGTQQWKGLPRYFK 274 (348)
T ss_dssp BTTSCEEEECCCEEEE
T ss_pred CCCCCEEECCCCCEEE
T ss_conf 3577434238862058
No 9
>d1vpsa_ b.121.6.1 (A:) Polyomavirus coat proteins {Murine polyomavirus, strain small-plaque 16 [TaxId: 10634]}
Probab=3.15 E-value=1e+02 Score=5.23 Aligned_cols=10 Identities=40% Similarity=0.903 Sum_probs=0.0
Q ss_pred CCCCCCCCCC
Q ss_conf 6665443234
Q 001773 999 SSRGFSRFFS 1008 (1015)
Q Consensus 999 ~~~~~~~~f~ 1008 (1015)
|-||++|||+
T Consensus 267 ~~rGLpRYF~ 276 (285)
T d1vpsa_ 267 HWRGLPRYFK 276 (285)
T ss_dssp EEEECCEEEE
T ss_pred EEECCCCEEE
T ss_conf 3207872168
No 10
>d1r8ja1 a.186.1.1 (A:177-282) Circadian clock protein KaiA, C-terminal domain {Synechococcus elongatus PCC 7942 [TaxId: 1140]}
Probab=3.02 E-value=1.3e+02 Score=4.53 Aligned_cols=20 Identities=40% Similarity=0.650 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHCCCCC
Q ss_conf 43321118986764215568
Q 001773 413 HLELMDDFLEMEKLACLSND 432 (1015)
Q Consensus 413 ~~~lmDDF~EmEkLa~~~~~ 432 (1015)
+|+|||+|.--=||.--+.+
T Consensus 61 Hmel~deFskqLkLEGrs~e 80 (106)
T d1r8ja1 61 HMELMDEFAKKLRVEGRSED 80 (106)
T ss_dssp HHHHHHHHHHHHHTTTCCTT
T ss_pred HHHHHHHHHHHHHHCCCCHH
T ss_conf 99999999999765466189
Done!