BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001775
(1015 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 301 bits (772), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 269/860 (31%), Positives = 389/860 (45%), Gaps = 124/860 (14%)
Query: 129 SISDGLTSNTDLFNRRQEIYGLNQFAESTPRSFWVFVWEALQDMTLMILGACAFVSLIVG 188
S + GLT D R E YG N+ +S W V E +D+ + IL A +S ++
Sbjct: 20 SETTGLTP--DQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLA 77
Query: 189 IVMEGWPHGAHDGLGIVASILLVVFVTATSDYRQSLQ-------FKDLDKEKKKIYVQVT 241
EG ILL++ A Q K+ + E K+Y +
Sbjct: 78 WFEEG--EETITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVY-RAD 134
Query: 242 RNGFRQKLSIYDLLPGDIVHLGIGDQVPADG--LFVSGFSVLIDESSLTGES-------- 291
R Q++ D++PGDIV + +GD+VPAD L + ++ +D+S LTGES
Sbjct: 135 RKSV-QRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTE 193
Query: 292 ---EPVMVNEENPFML-SGTKLQDGSCKMMVTTVGMRTQWGKLMATLSEGGDDETPLQVK 347
+P VN++ ML SGT + G +V T G+ T+ GK+ ++ D+TPLQ K
Sbjct: 194 PVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQK 253
Query: 348 LNGVATIIGKGGXXXXXXXXXXXXQGLLSHKLGEGSIWSWSGDDALKLLEYFXXXXXXXX 407
L+ + K G + + GS W + YF
Sbjct: 254 LDEFGEQLSKV-ISLICVAVWLINIGHFNDPVHGGS-WIRGA------IYYFKIAVALAV 305
Query: 408 XXXPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSASSICSDKTGTLTTNHMTVV 467
PEGLP +T LA ++M A+VR L + ET+G S ICSDKTGTLTTN M+V
Sbjct: 306 AAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVC 365
Query: 468 KSCICMNV-------KEVSKTDSASSLCSEI-----P------DSAVQLLLQSIFTNTGG 509
K I V E S T S + E+ P D V+L N
Sbjct: 366 KMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQFDGLVELATICALCNDSS 425
Query: 510 EVVVNKDGKREILGTPTETALLE-------FGLSLGGDFQAERQTS------KIVKVE-- 554
G E +G TETAL F + + ER + +++K E
Sbjct: 426 LDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQLMKKEFT 485
Query: 555 -PFNSSKKRMGVVLELPGGGLRA------HSKGASEIVLSGCDKVVNSTGEVV---PLDE 604
F+ +K M V P RA KGA E V+ C+ V T V P+ E
Sbjct: 486 LEFSRDRKSMSVYCS-PAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVGTTRVPMTGPVKE 544
Query: 605 ESLNHLKLTIDQFANEALRTLCLA------------------FMELETGFSPENPIPVSG 646
+ L+ +K + LR L LA FME ET
Sbjct: 545 KILSVIKEW--GTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYETDL---------- 592
Query: 647 YTLIAIVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGILTDD----G 702
T + +VG+ DP R V S+ +CR AGI V M+TGDN TA AI R GI ++
Sbjct: 593 -TFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVAD 651
Query: 703 IAIEGPVFREKTTEELMELIPKIQVMARSSPLDKHTLVKHLRTTFDEVVAVTGDGTNDAP 762
A G F + E E + AR P K +V++L++ +DE+ A+TGDG NDAP
Sbjct: 652 RAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQS-YDEITAMTGDGVNDAP 710
Query: 763 ALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIATVAKWGRSVYINIQKFVQFQLTVN 822
AL +A+IG+AMG +GT VAK ++++++ DDNFSTI + GR++Y N+++F+++ ++ N
Sbjct: 711 ALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSN 769
Query: 823 IVALIVNFSSACLTGSAPLTAVQLLWVNMIMDTLGALALATEPPTDELMKRPPVGKRGNF 882
+ ++ F +A L L VQLLWVN++ D L A AL PP ++M RPP +
Sbjct: 770 VGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPL 829
Query: 883 ISNVMWRNILGQSLYQFMVI 902
IS G +++M I
Sbjct: 830 IS--------GWLFFRYMAI 841
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 301 bits (772), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 269/860 (31%), Positives = 389/860 (45%), Gaps = 124/860 (14%)
Query: 129 SISDGLTSNTDLFNRRQEIYGLNQFAESTPRSFWVFVWEALQDMTLMILGACAFVSLIVG 188
S + GLT D R E YG N+ +S W V E +D+ + IL A +S ++
Sbjct: 19 SETTGLTP--DQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLA 76
Query: 189 IVMEGWPHGAHDGLGIVASILLVVFVTATSDYRQSLQ-------FKDLDKEKKKIYVQVT 241
EG ILL++ A Q K+ + E K+Y +
Sbjct: 77 WFEEG--EETITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVY-RAD 133
Query: 242 RNGFRQKLSIYDLLPGDIVHLGIGDQVPADG--LFVSGFSVLIDESSLTGES-------- 291
R Q++ D++PGDIV + +GD+VPAD L + ++ +D+S LTGES
Sbjct: 134 RKSV-QRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTE 192
Query: 292 ---EPVMVNEENPFML-SGTKLQDGSCKMMVTTVGMRTQWGKLMATLSEGGDDETPLQVK 347
+P VN++ ML SGT + G +V T G+ T+ GK+ ++ D+TPLQ K
Sbjct: 193 PVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQK 252
Query: 348 LNGVATIIGKGGXXXXXXXXXXXXQGLLSHKLGEGSIWSWSGDDALKLLEYFXXXXXXXX 407
L+ + K G + + GS W + YF
Sbjct: 253 LDEFGEQLSKV-ISLICVAVWLINIGHFNDPVHGGS-WIRGA------IYYFKIAVALAV 304
Query: 408 XXXPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSASSICSDKTGTLTTNHMTVV 467
PEGLP +T LA ++M A+VR L + ET+G S ICSDKTGTLTTN M+V
Sbjct: 305 AAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVC 364
Query: 468 KSCICMNV-------KEVSKTDSASSLCSEI-----P------DSAVQLLLQSIFTNTGG 509
K I V E S T S + E+ P D V+L N
Sbjct: 365 KMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQFDGLVELATICALCNDSS 424
Query: 510 EVVVNKDGKREILGTPTETALLE-------FGLSLGGDFQAERQTS------KIVKVE-- 554
G E +G TETAL F + + ER + +++K E
Sbjct: 425 LDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQLMKKEFT 484
Query: 555 -PFNSSKKRMGVVLELPGGGLRA------HSKGASEIVLSGCDKVVNSTGEVV---PLDE 604
F+ +K M V P RA KGA E V+ C+ V T V P+ E
Sbjct: 485 LEFSRDRKSMSVYCS-PAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVGTTRVPMTGPVKE 543
Query: 605 ESLNHLKLTIDQFANEALRTLCLA------------------FMELETGFSPENPIPVSG 646
+ L+ +K + LR L LA FME ET
Sbjct: 544 KILSVIKEW--GTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYETDL---------- 591
Query: 647 YTLIAIVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGILTDD----G 702
T + +VG+ DP R V S+ +CR AGI V M+TGDN TA AI R GI ++
Sbjct: 592 -TFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVAD 650
Query: 703 IAIEGPVFREKTTEELMELIPKIQVMARSSPLDKHTLVKHLRTTFDEVVAVTGDGTNDAP 762
A G F + E E + AR P K +V++L++ +DE+ A+TGDG NDAP
Sbjct: 651 RAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQS-YDEITAMTGDGVNDAP 709
Query: 763 ALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIATVAKWGRSVYINIQKFVQFQLTVN 822
AL +A+IG+AMG +GT VAK ++++++ DDNFSTI + GR++Y N+++F+++ ++ N
Sbjct: 710 ALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSN 768
Query: 823 IVALIVNFSSACLTGSAPLTAVQLLWVNMIMDTLGALALATEPPTDELMKRPPVGKRGNF 882
+ ++ F +A L L VQLLWVN++ D L A AL PP ++M RPP +
Sbjct: 769 VGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPL 828
Query: 883 ISNVMWRNILGQSLYQFMVI 902
IS G +++M I
Sbjct: 829 IS--------GWLFFRYMAI 840
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 301 bits (771), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 267/859 (31%), Positives = 389/859 (45%), Gaps = 123/859 (14%)
Query: 129 SISDGLTSNTDLFNRRQEIYGLNQFAESTPRSFWVFVWEALQDMTLMILGACAFVSLIVG 188
S + GLT D R E YG N+ +S W V E +D+ + IL A +S ++
Sbjct: 19 SETTGLTP--DQVKRHLEKYGHNELPAEEGKSLWELVLEQFEDLLVRILLLAACISFVLA 76
Query: 189 IVMEGWPHGAHDGLGIVASILLVVFVTATSDYRQSLQ-------FKDLDKEKKKIYVQVT 241
EG ILL++ A Q K+ + E K+Y +
Sbjct: 77 WFEEG--EETVTAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVY-RAD 133
Query: 242 RNGFRQKLSIYDLLPGDIVHLGIGDQVPADG--LFVSGFSVLIDESSLTGES-------- 291
R Q++ D++PGDIV + +GD+VPAD L + ++ +D+S LTGES
Sbjct: 134 RKSV-QRIKARDIVPGDIVEVAVGDKVPADIRILTIKSTTLRVDQSILTGESVSVIKHTE 192
Query: 292 ---EPVMVNEENPFML-SGTKLQDGSCKMMVTTVGMRTQWGKLMATLSEGGDDETPLQVK 347
+P VN++ ML SGT + G +V T G+ T+ GK+ ++ D+TPLQ K
Sbjct: 193 PVPDPRAVNQDKKNMLFSGTNIAAGKAIGIVATTGVGTEIGKIRDQMAATEQDKTPLQQK 252
Query: 348 LNGVATIIGKGGXXXXXXXXXXXXQGLLSHKLGEGSIWSWSGDDALKLLEYFXXXXXXXX 407
L+ + K G + + GS W + YF
Sbjct: 253 LDEFGEQLSKV-ISLICVAVWLINIGHFNDPVHGGS-WIRGA------IYYFKIAVALAV 304
Query: 408 XXXPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSASSICSDKTGTLTTNHMTVV 467
PEGLP +T LA ++M A+VR L + ET+G S ICSDKTGTLTTN M+V
Sbjct: 305 AAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVC 364
Query: 468 KSCI--------CMNVKEVSKTDSASSLCSEI-----------PDSAVQLLLQSIFTNTG 508
K I C+ + E S T S + E+ D V+L N
Sbjct: 365 KMFIIDRIDGDLCL-LNEFSVTGSTYAPEGEVLKNDKPVRSGQYDGLVELATICALCNDS 423
Query: 509 GEVVVNKDGKREILGTPTETALLE-------FGLSLGGDFQAERQTS------KIVKVE- 554
G E +G TETAL F + + ER + +++K E
Sbjct: 424 SLDFNETKGIYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQLMKKEF 483
Query: 555 --PFNSSKKRMGVVLELPGG----GLRAHSKGASEIVLSGCDKVVNSTGEVV---PLDEE 605
F+ +K M V G + KGA E V+ C+ V T V P+ E+
Sbjct: 484 TLEFSRDRKSMSVYCSPAKSRAAVGNKMFVKGAPEGVIDRCNYVRVGTTRVPMTGPVKEK 543
Query: 606 SLNHLKLTIDQFANEALRTLCLA------------------FMELETGFSPENPIPVSGY 647
L+ +K + LR L LA FME ET
Sbjct: 544 ILSVIKEW--GTGRDTLRCLALATRDTPPKREEMVLDDSTKFMEYETDL----------- 590
Query: 648 TLIAIVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGILTDD----GI 703
T + +VG+ DP R V S+ +CR AGI V M+TGDN TA AI R GI ++
Sbjct: 591 TFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEDVADR 650
Query: 704 AIEGPVFREKTTEELMELIPKIQVMARSSPLDKHTLVKHLRTTFDEVVAVTGDGTNDAPA 763
A G F + E E + AR P K +V++L++ FDE+ A+TGDG NDAPA
Sbjct: 651 AYTGREFDDLPLAEQREACRRACCFARVEPTHKSKIVEYLQS-FDEITAMTGDGVNDAPA 709
Query: 764 LHEADIGLAMGIAGTEVAKESADVIILDDNFSTIATVAKWGRSVYINIQKFVQFQLTVNI 823
L +A+IG+AMG +GT VAK ++++++ DDNFSTI + GR++Y N+++F+++ ++ N+
Sbjct: 710 LKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNV 768
Query: 824 VALIVNFSSACLTGSAPLTAVQLLWVNMIMDTLGALALATEPPTDELMKRPPVGKRGNFI 883
++ F +A L L VQLLWVN++ D L A AL PP ++M RPP + I
Sbjct: 769 GEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRTPKEPLI 828
Query: 884 SNVMWRNILGQSLYQFMVI 902
S G +++M I
Sbjct: 829 S--------GWLFFRYMAI 839
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 298 bits (763), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 268/860 (31%), Positives = 388/860 (45%), Gaps = 124/860 (14%)
Query: 129 SISDGLTSNTDLFNRRQEIYGLNQFAESTPRSFWVFVWEALQDMTLMILGACAFVSLIVG 188
S + GLT D R E YG N+ +S W V E +D+ + IL A +S ++
Sbjct: 19 SETTGLTP--DQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLA 76
Query: 189 IVMEGWPHGAHDGLGIVASILLVVFVTATSDYRQSLQ-------FKDLDKEKKKIYVQVT 241
EG ILL++ A Q K+ + E K+Y +
Sbjct: 77 WFEEG--EETITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVY-RAD 133
Query: 242 RNGFRQKLSIYDLLPGDIVHLGIGDQVPADG--LFVSGFSVLIDESSLTGES-------- 291
R Q++ D++PGDIV + +GD+VPAD L + ++ +D+S LTGES
Sbjct: 134 RKSV-QRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTE 192
Query: 292 ---EPVMVNEENPFML-SGTKLQDGSCKMMVTTVGMRTQWGKLMATLSEGGDDETPLQVK 347
+P VN++ ML SGT + G +V T G+ T+ GK+ ++ D+TPLQ K
Sbjct: 193 PVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQK 252
Query: 348 LNGVATIIGKGGXXXXXXXXXXXXQGLLSHKLGEGSIWSWSGDDALKLLEYFXXXXXXXX 407
L+ + K G + + GS W + YF
Sbjct: 253 LDEFGEQLSKV-ISLICVAVWLINIGHFNDPVHGGS-WIRGA------IYYFKIAVALAV 304
Query: 408 XXXPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSASSICSDKTGTLTTNHMTVV 467
PEGLP +T LA ++M A+VR L + ET+G S ICS KTGTLTTN M+V
Sbjct: 305 AAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSXKTGTLTTNQMSVC 364
Query: 468 KSCICMNV-------KEVSKTDSASSLCSEI-----P------DSAVQLLLQSIFTNTGG 509
K I V E S T S + E+ P D V+L N
Sbjct: 365 KMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQFDGLVELATICALCNDSS 424
Query: 510 EVVVNKDGKREILGTPTETALLE-------FGLSLGGDFQAERQTS------KIVKVE-- 554
G E +G TETAL F + + ER + +++K E
Sbjct: 425 LDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQLMKKEFT 484
Query: 555 -PFNSSKKRMGVVLELPGGGLRA------HSKGASEIVLSGCDKVVNSTGEVV---PLDE 604
F+ +K M V P RA KGA E V+ C+ V T V P+ E
Sbjct: 485 LEFSRDRKSMSVYCS-PAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVGTTRVPMTGPVKE 543
Query: 605 ESLNHLKLTIDQFANEALRTLCLA------------------FMELETGFSPENPIPVSG 646
+ L+ +K + LR L LA FME ET
Sbjct: 544 KILSVIKEW--GTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYETDL---------- 591
Query: 647 YTLIAIVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGILTDD----G 702
T + +VG+ DP R V S+ +CR AGI V M+TGDN TA AI R GI ++
Sbjct: 592 -TFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVAD 650
Query: 703 IAIEGPVFREKTTEELMELIPKIQVMARSSPLDKHTLVKHLRTTFDEVVAVTGDGTNDAP 762
A G F + E E + AR P K +V++L++ +DE+ A+TGDG NDAP
Sbjct: 651 RAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQS-YDEITAMTGDGVNDAP 709
Query: 763 ALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIATVAKWGRSVYINIQKFVQFQLTVN 822
AL +A+IG+AMG +GT VAK ++++++ DDNFSTI + GR++Y N+++F+++ ++ N
Sbjct: 710 ALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSN 768
Query: 823 IVALIVNFSSACLTGSAPLTAVQLLWVNMIMDTLGALALATEPPTDELMKRPPVGKRGNF 882
+ ++ F +A L L VQLLWVN++ D L A AL PP ++M RPP +
Sbjct: 769 VGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPL 828
Query: 883 ISNVMWRNILGQSLYQFMVI 902
IS G +++M I
Sbjct: 829 IS--------GWLFFRYMAI 840
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 270 bits (690), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 251/828 (30%), Positives = 382/828 (46%), Gaps = 96/828 (11%)
Query: 122 IAEKLSTSISDGLTSNTDLFNRRQEIY---GLNQFAESTPRSFWVFVWEALQ---DMTLM 175
+ K T +S GLT R EI G N WV L M L
Sbjct: 26 LHRKYGTDLSRGLTPA-----RAAEILARDGPNALTPPPTTPEWVKFCRQLFGGFSMLLW 80
Query: 176 ILGACAFVSLIVGIVMEGWPHGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKK 235
I F++ + E P + LG+V S VV +T Y Q + + + K
Sbjct: 81 IGAILCFLAYGIQAATEEEPQNDNLYLGVVLSA--VVIITGCFSYYQEAKSSKIMESFKN 138
Query: 236 IYVQ---VTRNGFRQKLSIYDLLPGDIVHLGIGDQVPADGLFVSGFSVLIDESSLTGESE 292
+ Q V RNG + ++ +++ GD+V + GD++PAD +S +D SSLTGESE
Sbjct: 139 MVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESE 198
Query: 293 PVM----VNEENPF-----MLSGTKLQDGSCKMMVTTVGMRTQWGKLMATLS---EGGDD 340
P ENP T +G+ + +V G RT G++ ATL+ EGG
Sbjct: 199 PQTRSPDFTNENPLETRNIAFFSTNCVEGTARGIVVYTGDRTVMGRI-ATLASGLEGG-- 255
Query: 341 ETPLQVKLNGVATIIGKGGXXXXXXXXXXXXQGLLSHKLGEGSIWSWSGDDALKLLEYFX 400
+TP+ ++ II G +L ++W LE
Sbjct: 256 QTPIAAEIEHFIHIIT--GVAVFLGVSFFILSLILE--------YTW--------LEAVI 297
Query: 401 XXXXXXXXXXPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSASSICSDKTGTLT 460
PEGL VT+ L K+M LV++L A ET+GS S+ICSDKTGTLT
Sbjct: 298 FLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLT 357
Query: 461 TNHMTVVKSCICMNVKEVSKTDSASSLCSEIPDSAVQLLLQSIFTNTGGEVV-VNKDG-- 517
N MTV + E T++ S + + SA L L I V N++
Sbjct: 358 QNRMTVAHMWSDNQIHEADTTENQSGVSFD-KTSATWLALSRIAGLCNRAVFQANQENLP 416
Query: 518 --KREILGTPTETALLE-FGLSLGGDFQAERQTSKIVKVEPFNSSKKRMGVVLELPGGGL 574
KR + G +E+ALL+ L G + + +KIV++ PFNS+ K + + P
Sbjct: 417 ILKRAVAGDASESALLKCIELCCGSVKEMRERYTKIVEI-PFNSTNKYQLSIHKNPNTAE 475
Query: 575 RAH---SKGASEIVLSGCDKVVNSTGEVVPLDEESLNHLKLTIDQFANEALRTL--CLAF 629
H KGA E +L C ++ G+ PLDEE + + + R L C F
Sbjct: 476 PRHLLVMKGAPERILDRCSSILIH-GKEQPLDEELKDAFQNAYLELGGLGERVLGFCHLF 534
Query: 630 M---ELETGF---SPENPIPVSGYTLIAIVGIKDPVRPGVKESVAVCRSAGITVRMVTGD 683
+ + GF + + P+ + ++ + DP R V ++V CRSAGI V MVTGD
Sbjct: 535 LPDEQFPEGFQFDTDDVNFPLDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGD 594
Query: 684 NINTAKAIARECGILTDDGIAIE------------------------GPVFREKTTEELM 719
+ TAKAIA+ GI+++ +E G ++ T+E+L
Sbjct: 595 HPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLD 654
Query: 720 ELIPKIQ--VMARSSPLDKHTLVKHLRTTFDEVVAVTGDGTNDAPALHEADIGLAMGIAG 777
+++ V AR+SP K +V+ + +VAVTGDG ND+PA +ADIG+AMGIAG
Sbjct: 655 DILKYHTEIVFARTSPQQKLIIVEGCQRQ-GAIVAVTGDGVNDSPASKKADIGVAMGIAG 713
Query: 778 TEVAKESADVIILDDNFSTIATVAKWGRSVYINIQKFVQFQLTVNIVALIVNFSSACLTG 837
++V+K++AD+I+LDDNF++I T + GR ++ N++K + + LT NI +
Sbjct: 714 SDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANI 773
Query: 838 SAPLTAVQLLWVNMIMDTLGALALATEPPTDELMKRPPVGKRGNFISN 885
PL V +L +++ D + A++LA E ++MKR P + + + N
Sbjct: 774 PLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQPRNPKTDKLVN 821
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 266 bits (680), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 250/828 (30%), Positives = 381/828 (46%), Gaps = 96/828 (11%)
Query: 122 IAEKLSTSISDGLTSNTDLFNRRQEIY---GLNQFAESTPRSFWVFVWEALQ---DMTLM 175
+ K T +S GLT R EI G N WV L M L
Sbjct: 20 LHRKYGTDLSRGLTPA-----RAAEILARDGPNALTPPPTTPEWVKFCRQLFGGFSMLLW 74
Query: 176 ILGACAFVSLIVGIVMEGWPHGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKK 235
I F++ + E P + LG+V S VV +T Y Q + + + K
Sbjct: 75 IGAILCFLAYGIQAATEEEPQNDNLYLGVVLSA--VVIITGCFSYYQEAKSSKIMESFKN 132
Query: 236 IYVQ---VTRNGFRQKLSIYDLLPGDIVHLGIGDQVPADGLFVSGFSVLIDESSLTGESE 292
+ Q V RNG + ++ +++ GD+V + GD++PAD +S +D SSLTGESE
Sbjct: 133 MVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESE 192
Query: 293 PVM----VNEENPF-----MLSGTKLQDGSCKMMVTTVGMRTQWGKLMATLS---EGGDD 340
P ENP T +G+ + +V G RT G++ ATL+ EGG
Sbjct: 193 PQTRSPDFTNENPLETRNIAFFSTNCVEGTARGIVVYTGDRTVMGRI-ATLASGLEGG-- 249
Query: 341 ETPLQVKLNGVATIIGKGGXXXXXXXXXXXXQGLLSHKLGEGSIWSWSGDDALKLLEYFX 400
+TP+ ++ II G +L ++W LE
Sbjct: 250 QTPIAAEIEHFIHIIT--GVAVFLGVSFFILSLILE--------YTW--------LEAVI 291
Query: 401 XXXXXXXXXXPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSASSICSDKTGTLT 460
PEGL VT+ L K+M LV++L A ET+GS S+ICS KTGTLT
Sbjct: 292 FLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSXKTGTLT 351
Query: 461 TNHMTVVKSCICMNVKEVSKTDSASSLCSEIPDSAVQLLLQSIFTNTGGEVV-VNKDG-- 517
N MTV + E T++ S + + SA L L I V N++
Sbjct: 352 QNRMTVAHMWSDNQIHEADTTENQSGVSFD-KTSATWLALSRIAGLCNRAVFQANQENLP 410
Query: 518 --KREILGTPTETALLE-FGLSLGGDFQAERQTSKIVKVEPFNSSKKRMGVVLELPGGGL 574
KR + G +E+ALL+ L G + + +KIV++ PFNS+ K + + P
Sbjct: 411 ILKRAVAGDASESALLKCIELCCGSVKEMRERYTKIVEI-PFNSTNKYQLSIHKNPNTAE 469
Query: 575 RAH---SKGASEIVLSGCDKVVNSTGEVVPLDEESLNHLKLTIDQFANEALRTL--CLAF 629
H KGA E +L C ++ G+ PLDEE + + + R L C F
Sbjct: 470 PRHLLVMKGAPERILDRCSSILIH-GKEQPLDEELKDAFQNAYLELGGLGERVLGFCHLF 528
Query: 630 M---ELETGF---SPENPIPVSGYTLIAIVGIKDPVRPGVKESVAVCRSAGITVRMVTGD 683
+ + GF + + P+ + ++ + DP R V ++V CRSAGI V MVTGD
Sbjct: 529 LPDEQFPEGFQFDTDDVNFPLDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGD 588
Query: 684 NINTAKAIARECGILTDDGIAIE------------------------GPVFREKTTEELM 719
+ TAKAIA+ GI+++ +E G ++ T+E+L
Sbjct: 589 HPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLD 648
Query: 720 ELIPKIQ--VMARSSPLDKHTLVKHLRTTFDEVVAVTGDGTNDAPALHEADIGLAMGIAG 777
+++ V AR+SP K +V+ + +VAVTGDG ND+PA +ADIG+AMGIAG
Sbjct: 649 DILKYHTEIVFARTSPQQKLIIVEGCQRQ-GAIVAVTGDGVNDSPASKKADIGVAMGIAG 707
Query: 778 TEVAKESADVIILDDNFSTIATVAKWGRSVYINIQKFVQFQLTVNIVALIVNFSSACLTG 837
++V+K++AD+I+LDDNF++I T + GR ++ N++K + + LT NI +
Sbjct: 708 SDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANI 767
Query: 838 SAPLTAVQLLWVNMIMDTLGALALATEPPTDELMKRPPVGKRGNFISN 885
PL V +L +++ D + A++LA E ++MKR P + + + N
Sbjct: 768 PLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQPRNPKTDKLVN 815
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 259 bits (661), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 224/767 (29%), Positives = 358/767 (46%), Gaps = 91/767 (11%)
Query: 200 DGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKIYVQ---VTRNGFRQKLSIYDLLP 256
D L + +++ VV VT Y Q + ++ K + Q V R+G + +++ L+
Sbjct: 138 DNLYLALALIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQQATVIRDGDKFQINADQLVV 197
Query: 257 GDIVHLGIGDQVPADGLFVSGFSVLIDESSLTGESEPVM----VNEENPF-----MLSGT 307
GD+V + GD+VPAD + +D SSLTGESEP E+P T
Sbjct: 198 GDLVEMKGGDRVPADIRILQAQGRKVDNSSLTGESEPQTRSPECTHESPLETRNIAFFST 257
Query: 308 KLQDGSCKMMVTTVGMRTQWGKLMATLSEGGDDE-TPLQVKLNGVATIIGKGGXXXXXXX 366
+G+ + +V G RT G++ A+L+ G ++E TP+ +++ II G
Sbjct: 258 MCLEGTAQGLVVNTGDRTIIGRI-ASLASGVENEKTPIAIEIEHFVDIIA--GLAILFGA 314
Query: 367 XXXXXQGLLSHKLGEGSIWSWSGDDALKLLEYFXXXXXXXXXXXPEGLPLAVTLSLAFAM 426
+ + L+ + +F PEGL VT+ L+
Sbjct: 315 TFFIVAMCIGYTF-------------LRAMVFFMAIVVAYV---PEGLLATVTVCLSLTA 358
Query: 427 KKMMNDKALVRHLAACETMGSASSICSDKTGTLTTNHMTVVKSCICMNVKEVSKTDSASS 486
K++ + +V++L A ET+GS S ICSDKTGTLT N MTV ++ T+ S
Sbjct: 359 KRLASKNCVVKNLEAVETLGSTSVICSDKTGTLTQNRMTVSHLWFDNHIHSADTTEDQSG 418
Query: 487 LCSEIPDSAVQLLLQSIFTNTGGEVVVNKDG----KREILGTPTETALLEFG-LSLGGDF 541
+ + L + + +D KR ++G +ETALL+F L+LG
Sbjct: 419 QTFDQSSETWRALCRVLTLCNRAAFKSGQDAVPVPKRIVIGDASETALLKFSELTLGNAM 478
Query: 542 QAERQTSKIVKVEPFNSSKKRMGVVLELPGGGLRAH---SKGASEIVLSGCDKVVNSTGE 598
+ K+ ++ PFNS+ K + L H KGA E VL C ++ G+
Sbjct: 479 GYRERFPKVCEI-PFNSTNKFQLSIHTLEDPRDPRHVLVMKGAPERVLERCSSIL-IKGQ 536
Query: 599 VVPLDE---ESLNHLKLTIDQFANEALRTLCLAFMELETGFSPENPI-------PVSGYT 648
+PLDE E+ L++ L C ++ E + P P SG +
Sbjct: 537 ELPLDEQWREAFQTAYLSLGGLGERVL-GFCQLYLS-EKDYPPGYAFDVEAMNFPTSGLS 594
Query: 649 LIAIVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGILTD-------- 700
+V + DP R V ++V CR+AGI V MVTGD+ TAKAIA GI+++
Sbjct: 595 FAGLVSMIDPPRATVPDAVLKCRTAGIRVIMVTGDHPITAKAIAASVGIISEGSETVEDI 654
Query: 701 ----------------DGIAIEGPVFREKTTEELMELI---PKIQVMARSSPLDKHTLVK 741
I G ++ EL+E + P++ V AR+SP K +V+
Sbjct: 655 AARLRVPVDQVNRKDARACVINGMQLKDMDPSELVEALRTHPEM-VFARTSPQQKLVIVE 713
Query: 742 HLRTTFDEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIATVA 801
+ +VAVTGDG ND+PAL +ADIG+AMGIAG++ AK +AD+I+LDDNF++I T
Sbjct: 714 SCQR-LGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGV 772
Query: 802 KWGRSVYINIQKFVQFQLTVNIVALIVNFSSACLTGSAPLTAVQLLWVNMIMDTLGALAL 861
+ GR ++ N++K + + LT NI L ++ PL + +L++ + D +++L
Sbjct: 773 EQGRLIFDNLKKSIAYTLTKNIPELTPYLIYITVSVPLPLGCITILFIELCTDIFPSVSL 832
Query: 862 ATEPPTDELMK-RPPVGKRGNFISNVMWRNILGQSLYQFMVISLLQA 907
A E ++M RP KR ++ + + Y + I +Q+
Sbjct: 833 AYEKAESDIMHLRPRNPKRDRLVNEPL-------AAYSYFQIGAIQS 872
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 256 bits (654), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 248/831 (29%), Positives = 381/831 (45%), Gaps = 108/831 (12%)
Query: 125 KLSTSISDGLTSNTDLFNRRQEIY---GLNQFAESTPRSFWV-FVWEALQDMTLMILGAC 180
K T ++ GLT+ R +EI G N W+ F + ++++
Sbjct: 59 KYGTDLTRGLTNA-----RAKEILARDGPNSLTPPPTTPEWIKFCRQLFGGFSILLWIGA 113
Query: 181 AFVSLIVGIVMEGWPHGAHDGLGIVASILLVVFVTAT-SDYRQSLQFKDLDKEKKKIYVQ 239
L GI A+D L + + VV VT S Y+++ + +D K + Q
Sbjct: 114 ILCFLAYGIQAATEDEPANDNLYLGVVLSTVVIVTGCFSYYQEAKSSRIMDSFKNMVPQQ 173
Query: 240 --VTRNGFRQKLSIYDLLPGDIVHLGIGDQVPADGLFVSGFSVLIDESSLTGESEPVM-- 295
V R+G + ++ ++ GD+V + GD++PAD +S +D SSLTGESEP
Sbjct: 174 ALVIRDGEKSTINAEFVVAGDLVEVKGGDRIPADLRIISAHGCKVDNSSLTGESEPQTRS 233
Query: 296 --VNEENPF-----MLSGTKLQDGSCKMMVTTVGMRTQWGKLMATLSEGGD-DETPL--- 344
+ ENP T +G+ + +V G RT G++ ATL+ G + TP+
Sbjct: 234 PEFSSENPLETRNIAFFSTNCVEGTARGVVVYTGDRTVMGRI-ATLASGLEVGRTPIAIE 292
Query: 345 ----QVKLNGVATIIGKGGXXXXXXXXXXXXQGLLSHKLGEGSIWSWSGDDALKLLEYFX 400
+ GVA +G +LS LG +SW LE
Sbjct: 293 IEHFIHIITGVAVFLGVSFF-------------ILSLILG----YSW--------LEAVI 327
Query: 401 XXXXXXXXXXPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSASSICSDKTGTLT 460
PEGL VT+ L K+M LV++L A ET+GS S+ICSDKTGTLT
Sbjct: 328 FLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLT 387
Query: 461 TNHMTVVKSCICMNVKEVSKT--------DSASSLCSEIPDSAVQLLLQSIFTNTGGEVV 512
N MTV + E T D S+ S + A L +++F V
Sbjct: 388 QNRMTVAHMWFDNQIHEADTTENQSGAAFDKTSATWSALSRIAA-LCNRAVFQAGQDNVP 446
Query: 513 VNKDGKREILGTPTETALLEFGLSLGGDFQAER-QTSKIVKVEPFNSSKKRMGVVLELPG 571
+ K R + G +E+ALL+ G Q R + KIV++ PFNS+ K + E
Sbjct: 447 ILK---RSVAGDASESALLKCIELCCGSVQGMRDRNPKIVEI-PFNSTNKYQLSIHENEK 502
Query: 572 GGLRAH---SKGASEIVLSGCDKVVNSTGEVVPLDE---ESLNHLKLTIDQFANEALRTL 625
+ KGA E +L C ++ + E PL E E+ + L + L
Sbjct: 503 SSESRYLLVMKGAPERILDRCSTILLNGAEE-PLKEDMKEAFQNAYLELGGLGERVLGFC 561
Query: 626 CLAFMELETG----FSPENP-IPVSGYTLIAIVGIKDPVRPGVKESVAVCRSAGITVRMV 680
A E + F + P P + + ++ + DP R V ++V CRSAGI V MV
Sbjct: 562 HFALPEDKYNEGYPFDADEPNFPTTDLCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMV 621
Query: 681 TGDNINTAKAIARECGILTDDGIAIE------------------------GPVFREKTTE 716
TGD+ TAKAIA+ GI+++ IE G ++ +TE
Sbjct: 622 TGDHPITAKAIAKGVGIISEGNETIEDIAARLNIPIGQVNPRDAKACVVHGSDLKDLSTE 681
Query: 717 ELMELIPKIQ--VMARSSPLDKHTLVKHLRTTFDEVVAVTGDGTNDAPALHEADIGLAMG 774
L +++ V AR+SP K +V+ + +VAVTGDG ND+PAL +ADIG+AMG
Sbjct: 682 VLDDILHYHTEIVFARTSPQQKLIIVEGCQRQ-GAIVAVTGDGVNDSPALKKADIGVAMG 740
Query: 775 IAGTEVAKESADVIILDDNFSTIATVAKWGRSVYINIQKFVQFQLTVNIVALIVNFSSAC 834
I+G++V+K++AD+I+LDDNF++I T + GR ++ N++K + + LT NI +
Sbjct: 741 ISGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLVFII 800
Query: 835 LTGSAPLTAVQLLWVNMIMDTLGALALATEPPTDELMKRPPVGKRGNFISN 885
PL V +L +++ D + A++LA E ++MKR P + + + N
Sbjct: 801 GNVPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQPRNPKTDKLVN 851
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 157 bits (396), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 167/728 (22%), Positives = 310/728 (42%), Gaps = 93/728 (12%)
Query: 106 EGHDVKKLKFH----GGVTGIAEKLSTSISDGLTSNTDLFNRRQEIYGLNQFAESTPRSF 161
+GHD ++ + GG + L T GLTS + RR+ YGLNQ E F
Sbjct: 56 DGHDAEEEEEEATPGGGRVVPEDMLQTDTRVGLTSEEVVQRRRK--YGLNQMKEEKENHF 113
Query: 162 WVFVWEALQDMTLMILGACAFVSLIVGIVMEGWPHGAHDGLGIVASILLVVFVTATSDYR 221
F+ + + ++ GA ++ +E W G++ +LL+ A +
Sbjct: 114 LKFLGFFVGPIQFVMEGAA-----VLAAGLEDWVD-----FGVICGLLLL---NAVVGFV 160
Query: 222 QSLQFKDLDKEKKK---IYVQVTRNGFRQKLSIYDLLPGDIVHLGIGDQVPADGLFVSGF 278
Q Q + E KK + V R+G +++ +++PGDI+ + G +PADG V+
Sbjct: 161 QEFQAGSIVDELKKTLALKAVVLRDGTLKEIEAPEVVPGDILQVEEGTIIPADGRIVTDD 220
Query: 279 SVL-IDESSLTGESEPVMVNEENPFMLSGTKLQDGSCKMMVTTVGMRTQWGKLMATLSEG 337
+ L +D+S+LTGES V ++ + + + + ++ G +++T G T G+ A ++
Sbjct: 221 AFLQVDQSALTGESLAVDKHKGDQ-VFASSAVKRGEAFVVITATGDNTFVGRAAALVNAA 279
Query: 338 GDDETPLQVKLNGVATIIGKGGXXXXXXXXXXXXQGLLSHKLGEGSIWSWSGDDALKLLE 397
LNG+ TI+ L+ +W S + +++
Sbjct: 280 SGGSGHFTEVLNGIGTIL------------------LILVIFTLLIVWVSSFYRSNPIVQ 321
Query: 398 YFXXXXXXXXXXXPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSASSICSDKTG 457
P GLP VT ++A + KA+V+ L+A E++ +CSDKTG
Sbjct: 322 ILEFTLAITIIGVPVGLPAVVTTTMAVGAAYLAKKKAIVQKLSAIESLAGVEILCSDKTG 381
Query: 458 TLTTNHMTVVKSCICMNVKEVSKTDSASSLCSEIPDSAVQLLLQSIFTNTGGEVVVNKDG 517
TLT N +++ V P+ + + G ++K
Sbjct: 382 TLTKNKLSLHDPYTVAGVD---------------PEDLMLTACLAASRKKKGIDAIDKAF 426
Query: 518 KREILGTPTETALLEFGLSLGGDFQAERQTSKIVKVEPFNSSKKRMGVVLELPGGGLRAH 577
+ + P ++L K+++ PF+ K++ V+E P G
Sbjct: 427 LKSLKYYPRAKSVL--------------SKYKVLQFHPFDPVSKKVVAVVESPQGERITC 472
Query: 578 SKGASEIVLSGCDKVVNSTGEVVPLDEESLNHLKLTIDQFANEALRTLCLAFMELETGFS 637
KGA VL + E P+ EE K + +FA R+L +A E
Sbjct: 473 VKGAPLFVLKTVE-------EDHPIPEEVDQAYKNKVAEFATRGFRSLGVARKRGE---- 521
Query: 638 PENPIPVSGYTLIAIVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGI 697
+ ++ I+ DP R ++V ++ G++++M+TGD + A+ +R+ G+
Sbjct: 522 -------GSWEILGIMPCMDPPRHDTYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGL 574
Query: 698 LTD--DGIAIEGPVFREKTTEELMELIPKIQVMARSSPLDKHTLVKHLRTTFDEVVAVTG 755
T+ + + + E+ + + A P K+ +V+ L+ +VA+TG
Sbjct: 575 GTNIYNAERLGLGGGGDMPGSEVYDFVEAADGFAEVFPQHKYNVVEILQQR-GYLVAMTG 633
Query: 756 DGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIATVAKWGRSVYINIQKFV 815
DG NDAP+L +AD G+A+ ++ A+ +AD++ L I K R ++ + +V
Sbjct: 634 DGVNDAPSLKKADTGIAVE-GSSDAARSAADIVFLAPGLGAIIDALKTSRQIFHRMYAYV 692
Query: 816 QFQLTVNI 823
+++ ++I
Sbjct: 693 VYRIALSI 700
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 147 bits (371), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 155/625 (24%), Positives = 274/625 (43%), Gaps = 82/625 (13%)
Query: 239 QVTRNGFRQKLSIYDLLPGDIVHLGIGDQVPADGLFVSGFSVLIDESSLTGESEPVMVNE 298
+V R+G + L+PGDIV + +GD +PAD + G + +D+S+LTGES PV
Sbjct: 133 KVLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDPLKVDQSALTGESLPV-TKH 191
Query: 299 ENPFMLSGTKLQDGSCKMMVTTVGMRTQWGK---LMATLSEGGDDETPLQVKLNGVATII 355
+ SG+ + G + +V G+ T +GK L+ + ++ G + L N I
Sbjct: 192 PGQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSI 251
Query: 356 GKGGXXXXXXXXXXXXQGLLSHKLGEGSIWSWSGDDALKLLEYFXXXXXXXXXXXPEGLP 415
G + K +G D+ L LL P +P
Sbjct: 252 AIG-----MVIEIIVMYPIQRRKYRDGI------DNLLVLL----------IGGIPIAMP 290
Query: 416 LAVTLSLAFAMKKMMNDKALVRHLAACETMGSASSICSDKTGTLTTNHMTVVKSCICMNV 475
+++++A ++ A+ + + A E M +CSDKTGTLT N ++V K+ + +
Sbjct: 291 TVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLVEVFC 350
Query: 476 KEVSKTDSASSLCSEIPDSAVQLLLQSIFTNTGGEVVVNKDGKREILGTPTETALLEFGL 535
K V K Q+LL + + V N+D + A++
Sbjct: 351 KGVEKD---------------QVLLFAAMASR----VENQDA--------IDAAMV---- 379
Query: 536 SLGGDFQAERQTSKIVKVEPFNSSKKRMGVVLELPGGGLRAHSKGASEIVLSGCDKVVNS 595
+ D + R + V PFN KR + G SKGA E +L +
Sbjct: 380 GMLADPKEARAGIREVHFLPFNPVDKRTALTYIDGSGNWHRVSKGAPEQILELAKASNDL 439
Query: 596 TGEVVPLDEESLNHLKLTIDQFANEALRTLCLA--FMELETGFSPENPIPVSGYTLIAIV 653
+ +V+ + ID++A LR+L +A + +T SP P + + ++
Sbjct: 440 SKKVLSI-----------IDKYAERGLRSLAVARQVVPEKTKESPGAP-----WEFVGLL 483
Query: 654 GIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGILTD--DGIAIEGPVFR 711
+ DP R E++ + G+ V+M+TGD + K R G+ T+ A+ G +
Sbjct: 484 PLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLG-THK 542
Query: 712 EKTTEEL--MELIPKIQVMARSSPLDKHTLVKHLRTTFDEVVAVTGDGTNDAPALHEADI 769
+ + ELI K A P K+ +VK L+ +V +TGDG NDAPAL +ADI
Sbjct: 543 DANLASIPVEELIEKADGFAGVFPEHKYEIVKKLQER-KHIVGMTGDGVNDAPALKKADI 601
Query: 770 GLAMGIAGTEVAKESADVIILDDNFSTIATVAKWGRSVYINIQKFVQFQLTVNIVALIVN 829
G+A+ A T+ A+ ++D+++ + S I + R+++ ++ + + +++ I ++
Sbjct: 602 GIAVADA-TDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITI-RIVFG 659
Query: 830 FSSACLTGSAPLTAVQLLWVNMIMD 854
F L +A +L + ++ D
Sbjct: 660 FMLIALIWEFDFSAFMVLIIAILND 684
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 95/183 (51%), Gaps = 30/183 (16%)
Query: 644 VSGYTLIAIVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGILTDDGI 703
V G T +A++ ++DP++ E++ + +GI + M+TGD+ TA+A+A GI
Sbjct: 541 VDGKT-VALLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLGI------ 593
Query: 704 AIEGPVFREKTTEELMELIPKIQVMARSSPLDKHTLVKHLRTTFDEVVAVTGDGTNDAPA 763
+K E+M P DK +V L+ +VA+ GDG NDAPA
Sbjct: 594 --------KKVVAEIM-------------PEDKSRIVSELKDK-GLIVAMAGDGVNDAPA 631
Query: 764 LHEADIGLAMGIAGTEVAKESADVIILDDNFSTIATVAKWGRSVYINIQKFVQFQLTVNI 823
L +ADIG+AMG GT+VA ESA V +L + IA + S NI++ + F N+
Sbjct: 632 LAKADIGIAMG-TGTDVAIESAGVTLLHGDLRGIAKARRLSESTMSNIRQNLFFAFIYNV 690
Query: 824 VAL 826
+ +
Sbjct: 691 LGV 693
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/323 (23%), Positives = 133/323 (41%), Gaps = 39/323 (12%)
Query: 162 WVFV---WEALQD-----MTLMILG-ACAFVSLIVGIVMEG-WPHGAHDGLGIVASIL-L 210
W F W++L+ TL+ +G A++ +V ++ G +PH G+VA
Sbjct: 131 WPFFKRGWQSLKTGQLNMFTLIAMGIGVAWIYSMVAVLWPGVFPHAFRSQEGVVAVYFEA 190
Query: 211 VVFVTATSDYRQSLQFKDLDKEKKKIYV----------QVTRNGFRQKLSIYDLLPGDIV 260
+T Q L+ K ++ I ++ +G +++S+ ++ GD++
Sbjct: 191 AAVITTLVLLGQVLELKAREQTGSAIRALLKLVPESAHRIKEDGSEEEVSLDNVAVGDLL 250
Query: 261 HLGIGDQVPADGLFVSGFSVLIDESSLTGESEPVMVNEENPFMLSGTKLQDGSCKMMVTT 320
+ G+++P DG G S +DES +TGE PV E + ++ T Q GS M
Sbjct: 251 RVRPGEKIPVDGEVQEGRS-FVDESMVTGEPIPV-AKEASAKVIGATINQTGSFVMKALH 308
Query: 321 VGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKGGXXXXXXXXXXXXQGLLSHKLG 380
VG T +++ +S+ P+Q + V+ G ++ LG
Sbjct: 309 VGSDTMLARIVQMVSDAQRSRAPIQRLADTVS------GWFVPAVILVAVLSFIVWALLG 362
Query: 381 EGSIWSWSGDDALKLLEYFXXXXXXXXXXXPEGLPLAVTLSLAFAMKKMMNDKALVRHLA 440
S+ A+ +L P L LA +S+ + K L+++
Sbjct: 363 PQPALSYGLIAAVSVL----------IIACPCALGLATPMSIMVGVGKGAQSGVLIKNAE 412
Query: 441 ACETMGSASSICSDKTGTLTTNH 463
A E M +++ DKTGTLT H
Sbjct: 413 ALERMEKVNTLVVDKTGTLTEGH 435
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 88/161 (54%), Gaps = 30/161 (18%)
Query: 652 IVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPVFR 711
++ + D +RP +E+++ ++ GI M+TGDN AK +A E G+ DD A
Sbjct: 138 VIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGL--DDYFA------- 188
Query: 712 EKTTEELMELIPKIQVMARSSPLDKHTLVKHLRTTFDEVVAVTGDGTNDAPALHEADIGL 771
E++P +K VK ++ + V A+ GDG NDAPAL +AD+G+
Sbjct: 189 --------EVLPH----------EKAEKVKEVQQKY--VTAMVGDGVNDAPALAQADVGI 228
Query: 772 AMGIAGTEVAKESADVIILDDNFSTIATVAKWGRSVYINIQ 812
A+G AGT+VA E+AD++++ ++ +A + + R Y ++
Sbjct: 229 AIG-AGTDVAVETADIVLVRNDPRDVAAIVELSRKTYSKLE 268
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 86/157 (54%), Gaps = 30/157 (19%)
Query: 652 IVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPVFR 711
++ + D +RP +E+++ ++ GI M+TGDN AK +A E G+ DD A
Sbjct: 138 VIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGL--DDYFA------- 188
Query: 712 EKTTEELMELIPKIQVMARSSPLDKHTLVKHLRTTFDEVVAVTGDGTNDAPALHEADIGL 771
E++P +K VK ++ + V A+ GDG NDAPAL +AD+G+
Sbjct: 189 --------EVLPH----------EKAEKVKEVQQKY--VTAMVGDGVNDAPALAQADVGI 228
Query: 772 AMGIAGTEVAKESADVIILDDNFSTIATVAKWGRSVY 808
A+G AGT+VA E+AD++++ ++ +A + + R Y
Sbjct: 229 AIG-AGTDVAVETADIVLVRNDPRDVAAIVELSRKTY 264
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 88/173 (50%), Gaps = 30/173 (17%)
Query: 652 IVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPVFR 711
I+ + D ++ K +V + GI V M+TGDN +A+AI+RE
Sbjct: 451 IIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELN--------------- 495
Query: 712 EKTTEELMELIPKIQVMARSSPLDKHTLVKHLRTTFDEVVAVTGDGTNDAPALHEADIGL 771
++L V+A P K VK L+ EVVA GDG NDAPAL +AD+G+
Sbjct: 496 -------LDL-----VIAEVLPHQKSEEVKKLQA--KEVVAFVGDGINDAPALAQADLGI 541
Query: 772 AMGIAGTEVAKESADVIILDDNFSTIATVAKWGRSVYINIQKFVQFQLTVNIV 824
A+G +G++VA ES D++++ D+ + + R I++ + + L N++
Sbjct: 542 AVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNVI 593
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 89/221 (40%), Gaps = 19/221 (8%)
Query: 240 VTRNGFRQKLSIYDLLPGDIVHLGIGDQVPADGLFVSGFSVLIDESSLTGESEPVMVNEE 299
V R+G + + ++ GDIV + G+++P DG+ V G S +DES ++GE PV+ ++
Sbjct: 137 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGES-YVDESMISGEPVPVLKSKG 195
Query: 300 NPFMLSGTKLQDGSCKMMVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKGG 359
+ + T G K+ T VG T +++ + + + P+Q + V
Sbjct: 196 DE-VFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYF---- 250
Query: 360 XXXXXXXXXXXXQGLLSHKLGEGSIWSWSGDDALKLLEYFXXXXXXXXXXXPEGLPLAVT 419
+L + W + LL F P LA
Sbjct: 251 -----------IPTVLLVAISAFIYWYFIAHA--PLLFAFTTLIAVLVVACPCAFGLATP 297
Query: 420 LSLAFAMKKMMNDKALVRHLAACETMGSASSICSDKTGTLT 460
+L M K L+++ A E +++ DKTGTLT
Sbjct: 298 TALTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTGTLT 338
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 88/173 (50%), Gaps = 30/173 (17%)
Query: 652 IVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPVFR 711
I+ + D ++ K +V + GI V M+TGDN +A+AI+RE
Sbjct: 529 IIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELN--------------- 573
Query: 712 EKTTEELMELIPKIQVMARSSPLDKHTLVKHLRTTFDEVVAVTGDGTNDAPALHEADIGL 771
++L V+A P K VK L+ EVVA GDG NDAPAL +AD+G+
Sbjct: 574 -------LDL-----VIAEVLPHQKSEEVKKLQA--KEVVAFVGDGINDAPALAQADLGI 619
Query: 772 AMGIAGTEVAKESADVIILDDNFSTIATVAKWGRSVYINIQKFVQFQLTVNIV 824
A+G +G++VA ES D++++ D+ + + R I++ + + L N++
Sbjct: 620 AVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNVI 671
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 89/221 (40%), Gaps = 19/221 (8%)
Query: 240 VTRNGFRQKLSIYDLLPGDIVHLGIGDQVPADGLFVSGFSVLIDESSLTGESEPVMVNEE 299
V R+G + + ++ GDIV + G+++P DG+ V G S +DES ++GE PV+ ++
Sbjct: 215 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGES-YVDESMISGEPVPVLKSKG 273
Query: 300 NPFMLSGTKLQDGSCKMMVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKGG 359
+ + T G K+ T VG T +++ + + + P+Q + V
Sbjct: 274 DE-VFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYF---- 328
Query: 360 XXXXXXXXXXXXQGLLSHKLGEGSIWSWSGDDALKLLEYFXXXXXXXXXXXPEGLPLAVT 419
+L + W + LL F P LA
Sbjct: 329 -----------IPTVLLVAISAFIYWYFIAH--APLLFAFTTLIAVLVVACPCAFGLATP 375
Query: 420 LSLAFAMKKMMNDKALVRHLAACETMGSASSICSDKTGTLT 460
+L M K L+++ A E +++ DKTGTLT
Sbjct: 376 TALTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTGTLT 416
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 81/161 (50%), Gaps = 30/161 (18%)
Query: 652 IVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPVFR 711
I+ + D ++ K +V + GI V M+TGDN +A+AI+RE
Sbjct: 157 IIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELN--------------- 201
Query: 712 EKTTEELMELIPKIQVMARSSPLDKHTLVKHLRTTFDEVVAVTGDGTNDAPALHEADIGL 771
++L V+A P K VK L+ EVVA GDG NDAPAL +AD+G+
Sbjct: 202 -------LDL-----VIAEVLPHQKSEEVKKLQAK--EVVAFVGDGINDAPALAQADLGI 247
Query: 772 AMGIAGTEVAKESADVIILDDNFSTIATVAKWGRSVYINIQ 812
A+G +G++VA ES D++++ D+ + + R I+
Sbjct: 248 AVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 81/161 (50%), Gaps = 30/161 (18%)
Query: 652 IVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPVFR 711
I+ + D ++ K +V + GI V M+TGDN +A+AI+RE
Sbjct: 157 IIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELN--------------- 201
Query: 712 EKTTEELMELIPKIQVMARSSPLDKHTLVKHLRTTFDEVVAVTGDGTNDAPALHEADIGL 771
++L V+A P K VK L+ EVVA GDG NDAPAL +AD+G+
Sbjct: 202 -------LDL-----VIAEVLPHQKSEEVKKLQAK--EVVAFVGDGINDAPALAQADLGI 247
Query: 772 AMGIAGTEVAKESADVIILDDNFSTIATVAKWGRSVYINIQ 812
A+G +G++VA ES D++++ D+ + + R I+
Sbjct: 248 AVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 78/154 (50%), Gaps = 30/154 (19%)
Query: 652 IVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPVFR 711
I+ + D ++ K +V + GI V +TGDN +A+AI+RE
Sbjct: 137 IIAVSDTLKESAKPAVQELKRXGIKVGXITGDNWRSAEAISRELN--------------- 181
Query: 712 EKTTEELMELIPKIQVMARSSPLDKHTLVKHLRTTFDEVVAVTGDGTNDAPALHEADIGL 771
++L V+A P K VK L+ EVVA GDG NDAPAL +AD+G+
Sbjct: 182 -------LDL-----VIAEVLPHQKSEEVKKLQAK--EVVAFVGDGINDAPALAQADLGI 227
Query: 772 AMGIAGTEVAKESADVIILDDNFSTIATVAKWGR 805
A+G +G++VA ES D++++ D+ + + R
Sbjct: 228 AVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSR 260
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 42/143 (29%)
Query: 655 IKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPVFREKT 714
+K+ +P V+E + GI V +TGDN +A+AI+RE
Sbjct: 23 LKESAKPAVQE----LKRXGIKVGXITGDNWRSAEAISRELN------------------ 60
Query: 715 TEELMELIPKIQVMARSSPLDKHTLVKHLRTTFDEVVAVTGDGTNDAPALHEADIGLAMG 774
++L V+A P K VK L+ EVVA GDG NDAPAL +AD+G+A+G
Sbjct: 61 ----LDL-----VIAEVLPHQKSEEVKKLQAK--EVVAFVGDGINDAPALAQADLGIAVG 109
Query: 775 IAGTEVAKESADVIILDDNFSTI 797
S D++++ D+ +
Sbjct: 110 ---------SGDIVLIRDDLRDV 123
>pdb|3GWI|A Chain A, Crystal Structure Of Mg-Atpase Nucleotide Binding Domain
Length = 170
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 9/105 (8%)
Query: 527 ETALLEFGLSLGGDFQAERQ-TSKIVKVE--PFNSSKKRMGVVLELPGGGLRAHSKGASE 583
+TA+LE G D ++ R S+ K++ PF+ ++RM VV+ + KGA +
Sbjct: 37 DTAVLE-----GTDEESARSLASRWQKIDEIPFDFERRRMSVVVAENTEHHQLVCKGALQ 91
Query: 584 IVLSGCDKVVNSTGEVVPLDEESLNHLKLTIDQFANEALRTLCLA 628
+L+ C +V ++ GE+VPLD+ L +K D + LR + +A
Sbjct: 92 EILNVCSQVRHN-GEIVPLDDIMLRKIKRVTDTLNRQGLRVVAVA 135
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 39/153 (25%), Positives = 75/153 (49%), Gaps = 29/153 (18%)
Query: 650 IAIVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPV 709
IA I D RP +K+ + ++ G+ + +++GD + K +++E I
Sbjct: 128 IASFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNIQ----------- 176
Query: 710 FREKTTEELMELIPKIQVMARSSPLDKHTLVKHLRTTFDEVVAVTGDGTNDAPALHEADI 769
+ + SP DK +++ L+ ++V+ + GDG NDA AL AD+
Sbjct: 177 ----------------EYYSNLSPEDKVRIIEKLKQNGNKVLMI-GDGVNDAAALALADV 219
Query: 770 GLAMGIAGTEVAKESADVIILDDNFSTIATVAK 802
+AMG G +++K AD+I++ ++ T+ + K
Sbjct: 220 SVAMG-NGVDISKNVADIILVSNDIGTLLGLIK 251
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 39/153 (25%), Positives = 75/153 (49%), Gaps = 29/153 (18%)
Query: 650 IAIVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPV 709
IA I D RP +K+ + ++ G+ + +++GD + K +++E I
Sbjct: 128 IASFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNIQ----------- 176
Query: 710 FREKTTEELMELIPKIQVMARSSPLDKHTLVKHLRTTFDEVVAVTGDGTNDAPALHEADI 769
+ + SP DK +++ L+ ++V+ + GDG NDA AL AD+
Sbjct: 177 ----------------EYYSNLSPEDKVRIIEKLKQNGNKVLMI-GDGVNDAAALALADV 219
Query: 770 GLAMGIAGTEVAKESADVIILDDNFSTIATVAK 802
+AMG G +++K AD+I++ ++ T+ + K
Sbjct: 220 SVAMG-NGVDISKNVADIILVSNDIGTLLGLIK 251
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 39/153 (25%), Positives = 75/153 (49%), Gaps = 29/153 (18%)
Query: 650 IAIVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPV 709
IA I D RP +K+ + ++ G+ + +++GD + K +++E I
Sbjct: 128 IASFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNIQ----------- 176
Query: 710 FREKTTEELMELIPKIQVMARSSPLDKHTLVKHLRTTFDEVVAVTGDGTNDAPALHEADI 769
+ + SP DK +++ L+ ++V+ + GDG NDA AL AD+
Sbjct: 177 ----------------EYYSNLSPEDKVRIIEKLKQNGNKVLMI-GDGVNDAAALALADV 219
Query: 770 GLAMGIAGTEVAKESADVIILDDNFSTIATVAK 802
+AMG G +++K AD+I++ ++ T+ + K
Sbjct: 220 SVAMG-NGVDISKNVADIILVSNDIGTLLGLIK 251
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 257 GDIVHLGIGDQVPADGLFVSGFSVLIDESSLTGESEPVMVNEENPFMLSGTKLQDGSCKM 316
GDI+ + G + P DG + G S ++DES +TGE+ PV + +++G+ Q+GS +
Sbjct: 45 GDIIKVVPGGKFPVDGRVIEGHS-MVDESLITGEAMPV-AKKPGSTVIAGSINQNGSLLI 102
Query: 317 MVTTVGMRTQWGKLMATLSE 336
T VG T +++ + E
Sbjct: 103 CATHVGADTTLSQIVKLVEE 122
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 240 VTRNGFRQKLSIYDLLPGDIVHLGIGDQVPADGLFVSGFSVLIDESSLTGESEPVMVNEE 299
V R+G + + ++ GDIV + G+++P DG+ V G S +DES ++GE PV+ +
Sbjct: 16 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGES-YVDESMISGEPVPVL-KSK 73
Query: 300 NPFMLSGTKLQDGSCKMMVTTVGMRTQWGKLM 331
+ T G K+ T VG T +++
Sbjct: 74 GDEVFGATINNTGVLKIRATRVGGETLLAQIV 105
>pdb|4DW8|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Na Crystal Form I
pdb|4DWO|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Mg Crystal Form Ii
Length = 279
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 703 IAIEGPVFREKTTEELMELIPKIQVMARSSPLDKHTLVKHLRTTFDEVVAVTGDGTNDAP 762
I ++G + ++ +EL+P+ L L++++ T +EV+A+ GDG ND
Sbjct: 173 IRLQGKINVFRSEPYFLELVPQ----GIDKALSLSVLLENIGMTREEVIAI-GDGYNDLS 227
Query: 763 ALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIA 798
+ A +G+AMG A E K++AD I L ++ +A
Sbjct: 228 MIKFAGMGVAMGNA-QEPVKKAADYITLTNDEDGVA 262
>pdb|4AQR|D Chain D, Crystal Structure Of A Calmodulin In Complex With The
Regulatory Domain Of A Plasma-Membrane Ca2+-Atpase
Length = 57
Score = 38.1 bits (87), Expect = 0.024, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 16 SSTEALEKWRNLCGVVKNPKRRFRFTANLSKRYEAAAMRK 55
SS E L++WR +V N RRFR+T +L K E MR+
Sbjct: 1 SSIERLQQWRK-AALVLNASRRFRYTLDLKKEQETREMRQ 39
>pdb|3NIW|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase From Bacteroides Thetaiotaomicron
Length = 279
Score = 36.2 bits (82), Expect = 0.086, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 703 IAIEGPVFREKTTEELMELIPKIQVMARSSPLDKHTLVKHLRTTFDEVVAVTGDGTNDAP 762
I ++G + ++ +EL+P+ L L++++ T +EV+A+ GDG ND
Sbjct: 173 IRLQGKINVFRSEPYFLELVPQ----GIDKALSLSVLLENIGXTREEVIAI-GDGYNDLS 227
Query: 763 ALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIA 798
+ A G+A G A E K++AD I L ++ +A
Sbjct: 228 XIKFAGXGVAXGNA-QEPVKKAADYITLTNDEDGVA 262
>pdb|2ECP|A Chain A, The Crystal Structure Of The E. Coli Maltodextrin
Phosphorylase Complex
pdb|2ECP|B Chain B, The Crystal Structure Of The E. Coli Maltodextrin
Phosphorylase Complex
Length = 796
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 141 FNRRQEIYGLNQFAESTPRSFWVFVWEALQDM 172
+R+ + YGLN AE TPR +W+ V EAL +M
Sbjct: 14 LSRQWQRYGLNSAAEMTPRQWWLAVSEALAEM 45
>pdb|1AHP|A Chain A, Oligosaccharide Substrate Binding In Escherichia Coli
Maltodextrin Phsphorylase
pdb|1AHP|B Chain B, Oligosaccharide Substrate Binding In Escherichia Coli
Maltodextrin Phsphorylase
Length = 797
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 141 FNRRQEIYGLNQFAESTPRSFWVFVWEALQDM 172
+R+ + YGLN AE TPR +W+ V EAL +M
Sbjct: 15 LSRQWQRYGLNSAAEMTPRQWWLAVSEALAEM 46
>pdb|1QM5|A Chain A, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1QM5|B Chain B, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|A Chain A, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|B Chain B, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
Length = 796
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 141 FNRRQEIYGLNQFAESTPRSFWVFVWEALQDM 172
+R+ + YGLN AE TPR +W+ V EAL +M
Sbjct: 14 LSRQWQRYGLNSAAEMTPRQWWLAVSEALAEM 45
>pdb|1L5V|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5V|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5W|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L5W|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L6I|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|1L6I|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|2ASV|A Chain A, X-Ray Studies On Protein Complexes: Enzymatic Catalysis In
Crystals Of E. Coli Maltodextrin Phosphorylase (Malp)
pdb|2ASV|B Chain B, X-Ray Studies On Protein Complexes: Enzymatic Catalysis In
Crystals Of E. Coli Maltodextrin Phosphorylase (Malp)
pdb|2AV6|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AV6|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AW3|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AW3|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AZD|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase (Malp)
Complexes: Recognition Of Substrates And Catalytic
Mechanism Of Phosphorylase Family
pdb|2AZD|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase (Malp)
Complexes: Recognition Of Substrates And Catalytic
Mechanism Of Phosphorylase Family
Length = 796
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 141 FNRRQEIYGLNQFAESTPRSFWVFVWEALQDM 172
+R+ + YGLN AE TPR +W+ V EAL +M
Sbjct: 14 LSRQWQRYGLNSAAEMTPRQWWLAVSEALAEM 45
>pdb|1NF2|A Chain A, X-Ray Crystal Structure Of Tm0651 From Thermotoga Maritima
pdb|1NF2|B Chain B, X-Ray Crystal Structure Of Tm0651 From Thermotoga Maritima
pdb|1NF2|C Chain C, X-Ray Crystal Structure Of Tm0651 From Thermotoga Maritima
Length = 268
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 12/91 (13%)
Query: 713 KTTEELMELIPKIQVMARSSPLDKHTLVKHLRTTFD---EVVAVTGDGTNDAPALHEADI 769
K+ +E++PK +DK ++ LR + E + V GD ND EA +
Sbjct: 176 KSFPTYLEIVPK--------NVDKGKALRFLRERMNWKKEEIVVFGDNENDLFMFEEAGL 227
Query: 770 GLAMGIAGTEVAKESADVIILDDNFSTIATV 800
+AM A E KE++D++ L +N S ++ V
Sbjct: 228 RVAMENA-IEKVKEASDIVTLTNNDSGVSYV 257
>pdb|1L7M|A Chain A, High Resolution Liganded Structure Of Phosphoserine
Phosphatase (Pi Complex)
pdb|1L7M|B Chain B, High Resolution Liganded Structure Of Phosphoserine
Phosphatase (Pi Complex)
pdb|1L7N|A Chain A, Transition State Analogue Of Phosphoserine Phosphatase
(Aluminum Fluoride Complex)
pdb|1L7N|B Chain B, Transition State Analogue Of Phosphoserine Phosphatase
(Aluminum Fluoride Complex)
Length = 211
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 31/139 (22%)
Query: 662 GVKESVAVCRSAGITVRMVTGDNINTAKAIARECGI--------LTDDGIA---IEGPVF 710
G +E++ ++ G V +V+G I + G+ + DG +EG V
Sbjct: 80 GAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGLDYAFANRLIVKDGKLTGDVEGEVL 139
Query: 711 REKTTEELMELIPKIQVMARSSPLDKHTLVKHLRTTFDEVVAVTGDGTNDAPALHEADIG 770
+E E++E I KI+ + ++ VAV GDG ND +A G
Sbjct: 140 KENAKGEILEKIAKIEGI-----------------NLEDTVAV-GDGANDISXFKKA--G 179
Query: 771 LAMGIAGTEVAKESADVII 789
L + + KE AD+ I
Sbjct: 180 LKIAFCAKPILKEKADICI 198
>pdb|1L7O|A Chain A, Crystal Structure Of Phosphoserine Phosphatase In Apo Form
pdb|1L7O|B Chain B, Crystal Structure Of Phosphoserine Phosphatase In Apo Form
pdb|1L7P|A Chain A, Substrate Bound Phosphoserine Phosphatase Complex
Structure
pdb|1L7P|B Chain B, Substrate Bound Phosphoserine Phosphatase Complex
Structure
Length = 211
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 31/139 (22%)
Query: 662 GVKESVAVCRSAGITVRMVTGDNINTAKAIARECGI--------LTDDGIA---IEGPVF 710
G +E++ ++ G V +V+G I + G+ + DG +EG V
Sbjct: 80 GAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGLDYAFANRLIVKDGKLTGDVEGEVL 139
Query: 711 REKTTEELMELIPKIQVMARSSPLDKHTLVKHLRTTFDEVVAVTGDGTNDAPALHEADIG 770
+E E++E I KI+ + ++ VAV GDG ND +A G
Sbjct: 140 KENAKGEILEKIAKIEGI-----------------NLEDTVAV-GDGANDISXFKKA--G 179
Query: 771 LAMGIAGTEVAKESADVII 789
L + + KE AD+ I
Sbjct: 180 LKIAFCAKPILKEKADICI 198
>pdb|1F5S|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
pdb|1F5S|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
Length = 211
Score = 35.0 bits (79), Expect = 0.23, Method: Composition-based stats.
Identities = 47/198 (23%), Positives = 79/198 (39%), Gaps = 41/198 (20%)
Query: 613 TIDQFANEA-----LRTLCLAFMELETGFSPENPIPVSGYTLIAIVGIKDPVR-----PG 662
TID+ A EA ++ + ME + F VS + I ++ ++ G
Sbjct: 21 TIDEIAREAGVEEEVKKITKEAMEGKLNFEQSLRKRVSLLKDLPIEKVEKAIKRITPTEG 80
Query: 663 VKESVAVCRSAGITVRMVTGDNINTAKAIARECGI--------LTDDGIA---IEGPVFR 711
+E++ ++ G V +V+G I + G+ + DG +EG V +
Sbjct: 81 AEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGLDYAFANRLIVKDGKLTGDVEGEVLK 140
Query: 712 EKTTEELMELIPKIQVMARSSPLDKHTLVKHLRTTFDEVVAVTGDGTNDAPALHEADIGL 771
E E++E I KI+ + ++ VAV GDG ND +A GL
Sbjct: 141 ENAKGEILEKIAKIEGI-----------------NLEDTVAV-GDGANDISMFKKA--GL 180
Query: 772 AMGIAGTEVAKESADVII 789
+ + KE AD+ I
Sbjct: 181 KIAFCAKPILKEKADICI 198
>pdb|1J97|A Chain A, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
pdb|1J97|B Chain B, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
Length = 211
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 47/198 (23%), Positives = 79/198 (39%), Gaps = 41/198 (20%)
Query: 613 TIDQFANEA-----LRTLCLAFMELETGFSPENPIPVSGYTLIAIVGIKDPVR-----PG 662
TID+ A EA ++ + ME + F VS + I ++ ++ G
Sbjct: 21 TIDEIAREAGVEEEVKKITKEAMEGKLNFEQSLRKRVSLLKDLPIEKVEKAIKRITPTEG 80
Query: 663 VKESVAVCRSAGITVRMVTGDNINTAKAIARECGI--------LTDDGIA---IEGPVFR 711
+E++ ++ G V +V+G I + G+ + DG +EG V +
Sbjct: 81 AEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGLDYAFANRLIVKDGKLTGDVEGEVLK 140
Query: 712 EKTTEELMELIPKIQVMARSSPLDKHTLVKHLRTTFDEVVAVTGDGTNDAPALHEADIGL 771
E E++E I KI+ + ++ VAV GDG ND +A GL
Sbjct: 141 ENAKGEILEKIAKIEGI-----------------NLEDTVAV-GDGANDISMFKKA--GL 180
Query: 772 AMGIAGTEVAKESADVII 789
+ + KE AD+ I
Sbjct: 181 KIAFCAKPILKEKADICI 198
>pdb|2VOY|H Chain H, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 48
Score = 33.1 bits (74), Expect = 0.85, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 398 YFXXXXXXXXXXXPEGLPLAVTLSLAFAMKKMMNDKALVRHL 439
YF PEGLP +T LA ++M A+VR L
Sbjct: 7 YFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSL 48
>pdb|3R4C|A Chain A, Divergence Of Structure And Function Among Phosphatases Of
The Haloalkanoate (Had) Enzyme Superfamily: Analysis Of
Bt1666 From Bacteroides Thetaiotaomicron
Length = 268
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 721 LIPKIQVMARSSPLDKHTLVKHLRTTFDEVVAVTGDGTNDAPALHEADIGLAMGIAGTEV 780
L + V S + R E++A GDG ND P L A IG+AMG A +V
Sbjct: 184 LFADVNVAGTSKATGLSLFADYYRVKVSEIMA-CGDGGNDIPMLKAAGIGVAMGNASEKV 242
>pdb|2RAR|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily.
pdb|2RAV|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily
Length = 261
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 739 LVKHLRTTFDEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVI 788
+++H +E ++ GDG ND L A IG+AMG A +V K +AD +
Sbjct: 195 IIRHFGIKLEETMSF-GDGGNDISMLRHAAIGVAMGQAKEDV-KAAADYV 242
>pdb|1YMQ|A Chain A, Had Superfamily Phosphotransferase Substrate
Diversification: Structure And Function Analysis Of The
Had Subclass Iib Sugar Phosphatase Bt4131
pdb|2RB5|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily.
pdb|2RBK|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily
Length = 261
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 739 LVKHLRTTFDEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVI 788
+++H +E ++ GDG ND L A IG+AMG A +V K +AD +
Sbjct: 195 IIRHFGIKLEETMSF-GDGGNDISMLRHAAIGVAMGQAKEDV-KAAADYV 242
>pdb|1JN0|O Chain O, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
pdb|1JN0|A Chain A, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
pdb|1JN0|B Chain B, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
Length = 335
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 28/137 (20%)
Query: 511 VVVNKDGKREILGTPTETALLEFGLSLGGDFQAERQTS--------KIVKV----EPFNS 558
VV+N G G + LL++ S+ G F A+ +T+ K++KV P N
Sbjct: 30 VVINDTG-----GVKQASHLLKYD-SILGTFDADVKTAGDSAISVGKVIKVVSDRNPVNL 83
Query: 559 SKKRMGVVLELPGGGLRAHSKGASEIVLSGCDKV-VNSTGE------VVPLDEESLNHLK 611
MG+ L + G G+ GA + + +G KV + + G+ VV ++EE H
Sbjct: 84 PWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKGDIPTYVVGVNEEGYTHAD 143
Query: 612 LTIDQFANEALRTLCLA 628
I +N + T CLA
Sbjct: 144 TII---SNASCTTNCLA 157
>pdb|2L1W|B Chain B, The Solution Structure Of Soybean Calmodulin Isoform 4
Complexed With The Vacuolar Calcium Atpase Bca1 Peptide
Length = 25
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 20 ALEKWRNLCGVVKNPKRRFRFTANL 44
A ++WR+ +VKN RRFR +NL
Sbjct: 1 ARQRWRSSVSIVKNRARRFRMISNL 25
>pdb|1RM5|O Chain O, Crystal Structure Of Mutant S188a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM5|A Chain A, Crystal Structure Of Mutant S188a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM5|B Chain B, Crystal Structure Of Mutant S188a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
Length = 337
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 29/138 (21%)
Query: 511 VVVNKDGKREILGTPTETALLEFGLSLGGDFQAERQTS---------KIVKV----EPFN 557
VV+N G G + LL++ S+ G F A+ +T+ K++KV P N
Sbjct: 31 VVINDTG-----GVKQASHLLKYD-SILGTFDADVKTAGDSAISVDGKVIKVVSDRNPVN 84
Query: 558 SSKKRMGVVLELPGGGLRAHSKGASEIVLSGCDKV-VNSTGE------VVPLDEESLNHL 610
MG+ L + G G+ GA + + +G KV + + G+ VV ++EE H
Sbjct: 85 LPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKGDIPTYVVGVNEEGYTHA 144
Query: 611 KLTIDQFANEALRTLCLA 628
I +N + T CLA
Sbjct: 145 DTII---SNASCTTNCLA 159
>pdb|1NBO|O Chain O, The Dual Coenzyme Specificity Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted By
The Crystal Structure Of A4 Isoform Complexed With Nad
pdb|1NBO|A Chain A, The Dual Coenzyme Specificity Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted By
The Crystal Structure Of A4 Isoform Complexed With Nad
pdb|1NBO|B Chain B, The Dual Coenzyme Specificity Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted By
The Crystal Structure Of A4 Isoform Complexed With Nad
pdb|1RM4|O Chain O, Crystal Structure Of Recombinant Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM4|A Chain A, Crystal Structure Of Recombinant Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM4|B Chain B, Crystal Structure Of Recombinant Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|2HKI|A Chain A, Crystal Structure Of Photosynthetic
Glyceraldehyde-3-Phosphate Dehydrogenase A4 Isoform
pdb|2PKQ|P Chain P, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|R Chain R, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|S Chain S, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
Length = 337
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 29/138 (21%)
Query: 511 VVVNKDGKREILGTPTETALLEFGLSLGGDFQAERQTS---------KIVKV----EPFN 557
VV+N G G + LL++ S+ G F A+ +T+ K++KV P N
Sbjct: 31 VVINDTG-----GVKQASHLLKYD-SILGTFDADVKTAGDSAISVDGKVIKVVSDRNPVN 84
Query: 558 SSKKRMGVVLELPGGGLRAHSKGASEIVLSGCDKV-VNSTGE------VVPLDEESLNHL 610
MG+ L + G G+ GA + + +G KV + + G+ VV ++EE H
Sbjct: 85 LPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKGDIPTYVVGVNEEGYTHA 144
Query: 611 KLTIDQFANEALRTLCLA 628
I +N + T CLA
Sbjct: 145 DTII---SNASCTTNCLA 159
>pdb|1RM3|O Chain O, Crystal Structure Of Mutant T33a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM3|A Chain A, Crystal Structure Of Mutant T33a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM3|B Chain B, Crystal Structure Of Mutant T33a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
Length = 337
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 29/138 (21%)
Query: 511 VVVNKDGKREILGTPTETALLEFGLSLGGDFQAERQTS---------KIVKV----EPFN 557
VV+N G G + LL++ S+ G F A+ +T+ K++KV P N
Sbjct: 31 VVINDAG-----GVKQASHLLKYD-SILGTFDADVKTAGDSAISVDGKVIKVVSDRNPVN 84
Query: 558 SSKKRMGVVLELPGGGLRAHSKGASEIVLSGCDKV-VNSTGE------VVPLDEESLNHL 610
MG+ L + G G+ GA + + +G KV + + G+ VV ++EE H
Sbjct: 85 LPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKGDIPTYVVGVNEEGYTHA 144
Query: 611 KLTIDQFANEALRTLCLA 628
I +N + T CLA
Sbjct: 145 DTII---SNASCTTNCLA 159
>pdb|2PKR|O Chain O, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|R Chain R, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|P Chain P, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|Q Chain Q, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|A Chain A, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|B Chain B, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|C Chain C, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|D Chain D, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|H Chain H, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|I Chain I, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|L Chain L, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|M Chain M, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
Length = 365
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 29/138 (21%)
Query: 511 VVVNKDGKREILGTPTETALLEFGLSLGGDFQAERQTS---------KIVKV----EPFN 557
VV+N G G + LL++ S+ G F A+ +T+ K++KV P N
Sbjct: 31 VVINDTG-----GVKQASHLLKYD-SILGTFDADVKTAGDSAISVDGKVIKVVSDRNPVN 84
Query: 558 SSKKRMGVVLELPGGGLRAHSKGASEIVLSGCDKV-VNSTGE------VVPLDEESLNHL 610
MG+ L + G G+ GA + + +G KV + + G+ VV ++EE H
Sbjct: 85 LPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKGDIPTYVVGVNEEGYTHA 144
Query: 611 KLTIDQFANEALRTLCLA 628
I +N + T CLA
Sbjct: 145 DTII---SNASCTTNCLA 159
>pdb|1TE2|A Chain A, Putative Phosphatase Ynic From Escherichia Coli K12
pdb|1TE2|B Chain B, Putative Phosphatase Ynic From Escherichia Coli K12
Length = 226
Score = 30.8 bits (68), Expect = 4.1, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 26/42 (61%)
Query: 650 IAIVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAI 691
I++V P+ PGV+E+VA+C+ G+ V + + ++ + +
Sbjct: 86 ISLVEETRPLLPGVREAVALCKEQGLLVGLASASPLHXLEKV 127
>pdb|1NRW|A Chain A, The Structure Of A Haloacid Dehalogenase-Like Hydrolase
From B. Subtilis
Length = 288
Score = 30.8 bits (68), Expect = 4.5, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 739 LVKHLRTTFDEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIA 798
L K L +E AV GD ND L A G+A G A ++ K AD + L ++ +A
Sbjct: 224 LAKQLNIPLEETAAV-GDSLNDKSXLEAAGKGVAXGNAREDI-KSIADAVTLTNDEHGVA 281
Query: 799 TVAK 802
K
Sbjct: 282 HXXK 285
>pdb|1IJA|A Chain A, Structure Of Sortase
pdb|2KID|A Chain A, Solution Structure Of The S. Aureus Sortase A-Substrate
Complex
Length = 148
Score = 30.0 bits (66), Expect = 7.3, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 16/84 (19%)
Query: 638 PENPIPVSGYTLIAIVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGI 697
P++ V+GY I IK+PV PG T + +N + A E
Sbjct: 8 PKDKSKVAGYIEIPDADIKEPVYPGP----------------ATPEQLNRGVSFAEENES 51
Query: 698 LTDDGIAIEGPVFREKTTEELMEL 721
L D I+I G F ++ + L
Sbjct: 52 LDDQNISIAGHTFIDRPNYQFTNL 75
>pdb|1T2P|A Chain A, Crystal Structure Of Sortase A From Staphylococcus Aureus
pdb|1T2P|B Chain B, Crystal Structure Of Sortase A From Staphylococcus Aureus
pdb|1T2P|C Chain C, Crystal Structure Of Sortase A From Staphylococcus Aureus
Length = 146
Score = 30.0 bits (66), Expect = 7.3, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 16/84 (19%)
Query: 638 PENPIPVSGYTLIAIVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGI 697
P++ V+GY I IK+PV PG T + +N + A E
Sbjct: 6 PKDKSKVAGYIEIPDADIKEPVYPGP----------------ATPEQLNRGVSFAEENES 49
Query: 698 LTDDGIAIEGPVFREKTTEELMEL 721
L D I+I G F ++ + L
Sbjct: 50 LDDQNISIAGHTFIDRPNYQFTNL 73
>pdb|1T2O|A Chain A, Crystal Structure Of Se-Srta, C184-Ala
pdb|1T2O|B Chain B, Crystal Structure Of Se-Srta, C184-Ala
pdb|1T2O|C Chain C, Crystal Structure Of Se-Srta, C184-Ala
Length = 146
Score = 30.0 bits (66), Expect = 7.4, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 16/84 (19%)
Query: 638 PENPIPVSGYTLIAIVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGI 697
P++ V+GY I IK+PV PG T + +N + A E
Sbjct: 6 PKDKSKVAGYIEIPDADIKEPVYPGP----------------ATPEQLNRGVSFAEENES 49
Query: 698 LTDDGIAIEGPVFREKTTEELMEL 721
L D I+I G F ++ + L
Sbjct: 50 LDDQNISIAGHTFIDRPNYQFTNL 73
>pdb|1T2W|A Chain A, Crystal Structure Of Sortase A In Complex With A Lpetg
Peptide
pdb|1T2W|B Chain B, Crystal Structure Of Sortase A In Complex With A Lpetg
Peptide
pdb|1T2W|C Chain C, Crystal Structure Of Sortase A In Complex With A Lpetg
Peptide
Length = 145
Score = 29.6 bits (65), Expect = 7.8, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 16/84 (19%)
Query: 638 PENPIPVSGYTLIAIVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGI 697
P++ V+GY I IK+PV PG T + +N + A E
Sbjct: 5 PKDKSKVAGYIEIPDADIKEPVYPGP----------------ATPEQLNRGVSFAEENES 48
Query: 698 LTDDGIAIEGPVFREKTTEELMEL 721
L D I+I G F ++ + L
Sbjct: 49 LDDQNISIAGHTFIDRPNYQFTNL 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,159,200
Number of Sequences: 62578
Number of extensions: 1137597
Number of successful extensions: 2789
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 2660
Number of HSP's gapped (non-prelim): 85
length of query: 1015
length of database: 14,973,337
effective HSP length: 108
effective length of query: 907
effective length of database: 8,214,913
effective search space: 7450926091
effective search space used: 7450926091
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)