Query 001776
Match_columns 1015
No_of_seqs 947 out of 4761
Neff 10.6
Searched_HMMs 29240
Date Tue Mar 26 16:14:24 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001776.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1074-1078//hhsearch_pdb/001776hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 552.9 55.6 592 351-1005 610-1247(1249)
2 2ymu_A WD-40 repeat protein; u 1.0 1 1 542.5 73.2 562 306-1004 7-577 (577)
3 1nr0_A Actin interacting prote 1.0 1 1 539.9 66.9 560 325-1006 21-610 (611)
4 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 536.3 57.9 543 324-957 617-1248(1249)
5 2ymu_A WD-40 repeat protein; u 1.0 1 1 519.2 73.2 535 349-1014 8-545 (577)
6 1nr0_A Actin interacting prote 1.0 1 1 507.0 70.7 537 355-1009 17-569 (611)
7 1pgu_A Actin interacting prote 1.0 1 1 495.1 63.3 546 355-1008 17-615 (615)
8 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 481.5 62.4 609 348-1014 9-790 (902)
9 1pgu_A Actin interacting prote 1.0 1 1 467.1 59.5 532 323-958 19-614 (615)
10 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 456.6 58.3 584 322-1003 17-827 (902)
No 1
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=552.89 Aligned_cols=592 Identities=14% Similarity=0.209 Sum_probs=410.2
Q ss_pred EEECCCCCEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 98406997437886368981999994587199997599623767533787516788554222356688887999982399
Q 001776 351 MTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG 430 (1015)
Q Consensus 351 ~~l~h~~~V~~i~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg 430 (1015)
...+|.+.|++++|+|+++ ++++|+.||.|++||+.+++.+.. +.+|...|.+++|+|++
T Consensus 610 ~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~~ 669 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFSSDD 669 (1249)
T ss_dssp EECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTTS
T ss_pred EEECCCCCEEEEEECCCCC-EEEEEECCCEEEEEECCCCCEEEE-------------------ECCCCCCEEEEEEECCC
T ss_conf 8716666489999879999-899994889499999899978887-------------------60677778999992699
Q ss_pred CEEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEECCCCCE
Q ss_conf 98999987986999981189301123588223476549999449993599999389919999868994679950788997
Q 001776 431 TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPV 510 (1015)
Q Consensus 431 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v 510 (1015)
++|++++.|+.|++||+.+++.+. .+.+|...|.+++|+|++...++++++.|+.|++||+.+++++..+.+|...|
T Consensus 670 ~~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v 746 (1249)
T 3sfz_A 670 SYIATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSV 746 (1249)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCE
T ss_pred CEEEEEECCCEEEEEECCCCCEEE---EECCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCHHHEECCCCCCE
T ss_conf 989998189959998779993689---99589973799998408996599998089709999899963422012777978
Q ss_pred EEEEECCCCCCCEEEEEECCCEEEEEECCCCCCEEEECC-------------CCCCEEEEEECCCCCEEEEEEECCCCCC
Q ss_conf 998301369964999982799299996789983133149-------------9996389999789999999851789983
Q 001776 511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA-------------PGHSSTMMAYSADGARLFSCGTNKEGES 577 (1015)
Q Consensus 511 ~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------------~~~~i~~~~~s~~~~~l~~~~~d~~~~~ 577 (1015)
.+++|++++ ..+++++.||.|++||+........+.. ....+.+++|+|++..+++++. +
T Consensus 747 ~~~~~sp~~--~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~-----~ 819 (1249)
T 3sfz_A 747 NHCRFSPDD--ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK-----N 819 (1249)
T ss_dssp EEEEECSST--TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEET-----T
T ss_pred EEEEEECCC--CEEEEEECCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECC-----C
T ss_conf 899992599--989999789859999688886553020232102467764456501799999789988999758-----9
Q ss_pred EEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCEE
Q ss_conf 69999689870347850789878489999279999999958982999968998236998258999985438972899999
Q 001776 578 YLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILL 657 (1015)
Q Consensus 578 ~i~iwd~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l 657 (1015)
.+.+||..++.....+...+...+.+++|+|++..+++++.|+.|++|++.++..+..+..| ...|.+++|+|++..+
T Consensus 820 ~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h--~~~v~~v~~spdg~~l 897 (1249)
T 3sfz_A 820 KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGH--LSWVHGVMFSPDGSSF 897 (1249)
T ss_dssp EEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEE
T ss_pred CEEEEEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEECCCC--CCCEEEEEECCCCCEE
T ss_conf 59999956897235774787776079998278888999947986999986789565322787--6656899998999989
Q ss_pred EEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCC-CCCE---ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99967995999983687300121037765422232-1010---0266555446666666665554456332234578888
Q 001776 658 AVSTNDNGIKILANADGIRLLRTVESRTFDASRVA-SAAI---VKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDS 733 (1015)
Q Consensus 658 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1015)
++++.|+.+++|+..+................... .... ............ ................+
T Consensus 898 ~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~~---- 969 (1249)
T 3sfz_A 898 LTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGK----TGQIDYLPEAQVSCCCL---- 969 (1249)
T ss_dssp EEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEES----SCCEEEECCSCEEEEEE----
T ss_pred EEEECCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECC----CCEEEECCCCCEEEEEE----
T ss_conf 9995897289887466520102113310368975998689981377624898447----65089725672789999----
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCC---
Q ss_conf 77756665422223332011121012588613573048876876189999917972899801575899944566678---
Q 001776 734 RNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNER--- 810 (1015)
Q Consensus 734 ~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~iw~~~~~~~--- 810 (1015)
.+++..+++++.++.+++|++..... ... ..+|...|.+++|+|+++++++++.||.+++|++..+..
T Consensus 970 --sp~g~~l~~g~~~g~i~i~d~~~~~~---~~~----~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~ 1040 (1249)
T 3sfz_A 970 --SPHLEYVAFGDEDGAIKIIELPNNRV---FSS----GVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFL 1040 (1249)
T ss_dssp --CTTSSEEEEEETTSCCEEEETTTTSC---EEE----CCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECC
T ss_pred --CCCCCEEEEECCCCCEEEEECCCCCE---EEE----CCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEE
T ss_conf --58997799986999889997578723---443----036777168999989999899986998799998799966898
Q ss_pred ------------CCCCCEE---CCCCCEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEC-CCEEEEEECCCC
Q ss_conf ------------8898500---014851017999752014688999999803899735997999971-991999967787
Q 001776 811 ------------NSTGKAT---TNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTF 874 (1015)
Q Consensus 811 ------------~~~~~~~---~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~ 874 (1015)
.+++... ....+.+||..++..... +.+ |...|.+++|+||++++++++ |+.|++||+.++
T Consensus 1041 ~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~-~~~--~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~ 1117 (1249)
T 3sfz_A 1041 QAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERD-FTC--HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL 1117 (1249)
T ss_dssp BCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEE-EEC--CSSCCCCEEECSSSSSCEEECCSSCCCEECSSSS
T ss_pred ECCCCCEEEEEECCCCCEEEEECCCCEEEEECCCCCEEEE-ECC--CCCCEEEEEECCCCCEEEEECCCCCEEEEECCCC
T ss_conf 5278738999990899589997889689988898865588-746--6884899999899998999849994899878985
Q ss_pred CEEEEECCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCEEEEEE---------CCCCCCEEEEEEECCCCEEEEE
Q ss_conf 1468937999991699973899958999974981999982136289997---------1755776799992799999998
Q 001776 875 KTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKL---------KGHQKRITGLAFSNTLNVLVSS 945 (1015)
Q Consensus 875 ~~~~~l~~~~~~i~~i~~sp~d~~~la~~~~dg~i~iwd~~~~~~~~~l---------~~h~~~v~~l~~spdg~~l~s~ 945 (1015)
+.+..+.+|...|++++|+| +++++++++.||.|++||+.+++.+..+ .+|.+.|++++|+||+.+++++
T Consensus 1118 ~~~~~l~~h~~~v~~~~~s~-dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~ 1196 (1249)
T 3sfz_A 1118 SPLHELKGHNGCVRCSAFSL-DGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA 1196 (1249)
T ss_dssp SCSBCCCCCSSCEEEEEECS-SSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEE
T ss_pred CEEEEECCCCCCEEEEEECC-CCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEC
T ss_conf 00125506877679999979-99989998289979999889994578851444442102567428999997899989977
Q ss_pred ECCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCEEEEECCCCCEEEEE-ECCEEEEEEC
Q ss_conf 18982999985676510115887259986566773599985699899999-5880999985
Q 001776 946 GADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEA 1005 (1015)
Q Consensus 946 s~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~vwd~ 1005 (1015)
+ |.|++||+.+++.. ....++. ..|.+++|+|||++|+++ .||.+++|++
T Consensus 1197 ~--g~v~vwd~~~g~~~-----~~~~~~~---~~i~~~~~s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1197 G--GYLKWWNVATGDSS-----QTFYTNG---TNLKKIHVSPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp S--SSEEEBCSSSCBCC-----CCCCCSS---CCCCCCEECSSSCCEEEECTTCCEEEECC
T ss_pred C--CEEEEEECCCCCEE-----EEEECCC---CCCCEEEECCCCCEEEEECCCCEEEEEEE
T ss_conf 9--85999898889500-----4640047---75327999789877999668817999764
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=542.48 Aligned_cols=562 Identities=22% Similarity=0.361 Sum_probs=468.3
Q ss_pred HHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCC------CCCEEEEEEC-CCCCEEEEEECCCCCEEEEEEECC
Q ss_conf 511887887754235323401134379998875323789------8941679840-699743788636898199999458
Q 001776 306 LKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDD------LPKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNM 378 (1015)
Q Consensus 306 ~~~~~~~~~~~~v~~~~~~i~~~~~s~~g~~i~~~~~~~------~~~~~~~~l~-h~~~V~~i~~sp~g~~lla~g~~d 378 (1015)
.+++++.||.+.|. |++|+|+|+++++.+.|. ...++++++. |...|++++|+|+++ ++++++.|
T Consensus 7 ~e~~~L~GH~~~V~-------~~a~spdg~~las~~~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~-~las~~~d 78 (577)
T 2ymu_A 7 KERNRLEAHSSSVR-------GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDD 78 (577)
T ss_dssp CEEEEECCCSSCEE-------EEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSS-EEEEEETT
T ss_pred EEEEEECCCCCCEE-------EEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCC-EEEEEECC
T ss_conf 89439878998579-------99998998999999389989999799978999968989989999989999-99999698
Q ss_pred CEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEE
Q ss_conf 71999975996237675337875167885542223566888879999823999899998798699998118930112358
Q 001776 379 GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLE 458 (1015)
Q Consensus 379 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~ 458 (1015)
+.|++||.. ++.+.. +.+|...|.+++|+||+++|++++.|+.+++|+...... . .
T Consensus 79 ~~i~vWd~~-~~~~~~-------------------~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~-~---~ 134 (577)
T 2ymu_A 79 KTVKLWNRN-GQLLQT-------------------LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL-Q---T 134 (577)
T ss_dssp SCEEEEETT-SCEEEE-------------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEE-E---E
T ss_pred CEEEEEECC-CCEEEE-------------------EECCCCCEEEEEECCCCCEEEEECCCCCEEECCCCCCEE-E---E
T ss_conf 979999899-978999-------------------978999889999989999899980798335202355200-1---1
Q ss_pred EECCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCEEEEEEC
Q ss_conf 82234765499994499935999993899199998689946799507889979983013699649999827992999967
Q 001776 459 IEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLY 538 (1015)
Q Consensus 459 l~~h~~~v~~i~~s~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~ 538 (1015)
..++...+..+.++|++. .+++++.++.+++|+. ..........|...+.++.+.+++ .++++++.|+.|++|+.
T Consensus 135 ~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~v~~w~~ 209 (577)
T 2ymu_A 135 LTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDG--QTIASASDDKTVKLWNR 209 (577)
T ss_dssp ECCCSSCEEEEEECTTSS--CEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTS--SCEEEEETTSEEEEECT
T ss_pred CCCCCCCEEEEEEECCCC--CCEECCCCCCEECCCC-CEEEEEECCCCCCCEEEEEECCCC--CEEEEECCCCEEEEEEC
T ss_conf 047777435554203776--3200255531000000-000000026877635665416997--78999859998999949
Q ss_pred CCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEEC
Q ss_conf 89983133149999638999978999999985178998369999689870347850789878489999279999999958
Q 001776 539 DNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGD 618 (1015)
Q Consensus 539 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 618 (1015)
. ......+..+...+.+++|+|+++++++++.++ .+++|+. +++.+..+.+|.. .+.+++|+|++..+++++.
T Consensus 210 ~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~----~i~~w~~-~~~~~~~~~~~~~-~v~~v~~~~d~~~l~~~~~ 282 (577)
T 2ymu_A 210 N-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK----TVKLWNR-NGQLLQTLTGHSS-SVNGVAFRPDGQTIASASD 282 (577)
T ss_dssp T-SCEEEEEECCSSCEEEEEECTTSSCEEEEETTS----CEEEECT-TSCEEEEECCCSS-CEEEEEECTTSSEEEEEET
T ss_pred C-CCEEEEEECCCCCEEEEEECCCCCEEEEEECCC----EEEEEEC-CCCEEEEEECCCC-CEEEEEECCCCCEEEEEEC
T ss_conf 9-968999946889889999979999999991899----8999959-9979999806889-8799999689999999959
Q ss_pred CCCEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCEEC
Q ss_conf 98299996899823699825899998543897289999999967995999983687300121037765422232101002
Q 001776 619 EFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVK 698 (1015)
Q Consensus 619 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1015)
|+.|++|+. +++.+..+..| ...|.+++|+|++..+++++.|+.+++|+.... ....+.+|...+..
T Consensus 283 d~~i~~w~~-~~~~~~~~~~h--~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~--~~~~~~~~~~~v~~-------- 349 (577)
T 2ymu_A 283 DKTVKLWNR-NGQLLQTLTGH--SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--HLQTLTGHSSSVWG-------- 349 (577)
T ss_dssp TSCEEEEET-TSCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTSC--EEEEECCCSSCEEE--------
T ss_pred CCEEEEEEC-CCCEEEEEECC--CCCEEEEEECCCCCEEEEEECCCEEEEEECCCC--EEEEEECCCCCEEE--------
T ss_conf 997999948-99589997068--897699999999999999969995999969997--25787478897799--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCC
Q ss_conf 66555446666666665554456332234578888777566654222233320111210125886135730488768761
Q 001776 699 APAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMR 778 (1015)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~ 778 (1015)
..| .++++.++++..|+.+++|+... .....+ ..|...
T Consensus 350 ----------------------------~~~------s~~g~~l~~~~~dg~v~~~~~~~----~~~~~~----~~~~~~ 387 (577)
T 2ymu_A 350 ----------------------------VAF------SPDGQTIASASDDKTVKLWNRNG----QLLQTL----TGHSSS 387 (577)
T ss_dssp ----------------------------EEE------CTTSSEEEEEETTSEEEEEETTC----CEEEEE----ECCSSC
T ss_pred ----------------------------EEE------CCCCCEEEEEECCCEEEEECCCC----CEEEEE----CCCCCC
T ss_conf ----------------------------999------89999999996999899990899----789985----278897
Q ss_pred EEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEE
Q ss_conf 89999917972899801575899944566678889850001485101799975201468899999980389973599799
Q 001776 779 VSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYV 858 (1015)
Q Consensus 779 i~~l~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~l 858 (1015)
|.+++|+|+++++++++.|+.+++|+... ..+ ..+.+ |...|.+++|+||++++
T Consensus 388 v~~~~~s~dg~~l~~~~~d~~v~~~~~~~-----------------------~~~-~~~~~--~~~~v~~~~~s~d~~~l 441 (577)
T 2ymu_A 388 VRGVAFSPDGQTIASASDDKTVKLWNRNG-----------------------QLL-QTLTG--HSSSVWGVAFSPDDQTI 441 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSEEEEECTTC-----------------------CEE-EEEEC--CSSCEEEEEECTTSSEE
T ss_pred EEEEEECCCCCEEEEEECCCEEEEEECCC-----------------------CEE-EEECC--CCCCEEEEEECCCCCEE
T ss_conf 48999989999999994999899996999-----------------------789-89628--89975799998999999
Q ss_pred EEEC-CCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEEC
Q ss_conf 9971-991999967787146893799999169997389995899997498199998213628999717557767999927
Q 001776 859 MSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSN 937 (1015)
Q Consensus 859 a~~s-dg~i~iwd~~~~~~~~~l~~~~~~i~~i~~sp~d~~~la~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~l~~sp 937 (1015)
++++ |+.|++|+. +++.+..+.+|...|++++|+| ++++|++++.|+.|++|+. +++++..+.+|...|++++|+|
T Consensus 442 ~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~sp-d~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~ 518 (577)
T 2ymu_A 442 ASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP 518 (577)
T ss_dssp EEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECT-TSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECT
T ss_pred EEECCCCEEEEEEC-CCCEEEEECCCCCCEEEEEECC-CCCEEEEEECCCEEEEECC-CCCEEEEEECCCCCEEEEEECC
T ss_conf 99939998999979-9988999727899778999969-9999999919897999939-9978999867999989999918
Q ss_pred CCCEEEEEECCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCEEEEECCCCCEEEEE-ECCEEEEEE
Q ss_conf 9999999818982999985676510115887259986566773599985699899999-588099998
Q 001776 938 TLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYE 1004 (1015)
Q Consensus 938 dg~~l~s~s~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~vwd 1004 (1015)
|+++|++++.|+.|++||.. ++ .+....+|. +.|++++|+|||++|+++ .|+.|++||
T Consensus 519 dg~~l~s~~~dg~v~lwd~~-~~-----~~~~~~~h~---~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 519 DGQTIASASDDKTVKLWNRN-GQ-----LLQTLTGHS---SSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp TSSCEEEEETTSEEEEECTT-SC-----EEEEEECCS---SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCEEEEEECCCEEEEEECC-CC-----EEEEECCCC---CCEEEEEECCCCCEEEEEECCCEEEEEC
T ss_conf 99999999896999999699-97-----898971888---8878999968999999990899999969
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=539.89 Aligned_cols=560 Identities=14% Similarity=0.168 Sum_probs=442.0
Q ss_pred EEEEEECCCCCCCCCCCCCC------CCCEEEEEE-CCCCCEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEEE
Q ss_conf 01134379998875323789------894167984-06997437886368981999994587199997599623767533
Q 001776 325 ILPVAYTPQSLGQSSYSTDD------LPKTVVMTL-NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSF 397 (1015)
Q Consensus 325 i~~~~~s~~g~~i~~~~~~~------~~~~~~~~l-~h~~~V~~i~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~ 397 (1015)
+.+++|+|+|+.+++.+.+. .......++ +|...|++++|+|+|+ ++|+|+.||+|+|||+.+++.....
T Consensus 21 ~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~~-- 97 (611)
T 1nr0_A 21 AVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILKT-- 97 (611)
T ss_dssp CCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEEE--
T ss_pred EEEEEECCCCCEEEECCCCEEEEECCCCCCCCEEECCCCCCEEEEEECCCCC-EEEEEECCCCEEEEECCCCCCEEEE--
T ss_conf 3697667999979967999799945787242737658998659999999996-8999948997899489898415667--
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECC----CEEEEEECCCCCEEEEEEEEECCCCCEEEEEEEC
Q ss_conf 787516788554222356688887999982399989999879----8699998118930112358822347654999944
Q 001776 398 KVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK----HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY 473 (1015)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~~d----g~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~ 473 (1015)
.+.+|.+.|.+++|+||+++|++++.+ +.|++|+ .+.... .+.+|...|.+++|+|
T Consensus 98 ---------------~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~---~l~gh~~~v~~v~f~p 157 (611)
T 1nr0_A 98 ---------------TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNG---NLTGQARAMNSVDFKP 157 (611)
T ss_dssp ---------------EEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCB---CCCCCSSCEEEEEECS
T ss_pred ---------------EECCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEE--CCCCCC---EECCCCCCCEEEEECC
T ss_conf ---------------62255784489998999997999989977366999963--899763---2547889836999889
Q ss_pred CCCCEEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCEEEEC-----
Q ss_conf 999359999938991999986899467995078899799830136996499998279929999678998313314-----
Q 001776 474 PNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD----- 548 (1015)
Q Consensus 474 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----- 548 (1015)
++.. .+++++.|++|++||...+++...+.+|...|.+++|+|+ ++++++++.|+.|++||+.++.....+.
T Consensus 158 ~~~~-~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspd--g~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~ 234 (611)
T 1nr0_A 158 SRPF-RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD--GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK 234 (611)
T ss_dssp SSSC-EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTCCEEEECBCTTSS
T ss_pred CCCE-EEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCC--CCEEEEEECCCCEEEEECCCCCEEEEECCCCCC
T ss_conf 9982-9999928980999979997576652002571699999799--998999989991999889998286651366432
Q ss_pred --CCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEEECCCC--CCEEEEEEECCCCEEEEEECCCCEEE
Q ss_conf --99996389999789999999851789983699996898703478507898--78489999279999999958982999
Q 001776 549 --APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK--RSVGVVQFDTTKNRFLAAGDEFMIKF 624 (1015)
Q Consensus 549 --~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~--~~i~~i~~~~~~~~l~~~~~dg~i~i 624 (1015)
.|...|.+++|+|+++++++++.|+ .|++||+.+++....+..+.. .....+.| ++..+++++.|+.+++
T Consensus 235 ~~~h~~~V~~v~~spdg~~l~s~s~D~----~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~ 308 (611)
T 1nr0_A 235 NVAHSGSVFGLTWSPDGTKIASASADK----TIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINF 308 (611)
T ss_dssp SCSSSSCEEEEEECTTSSEEEEEETTS----EEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEE
T ss_pred CCCCCCCEEEEEECCCCCEEEEEECCC----EEEEEECCCCCEEEEECCCCCCCCEEEEEEE--CCCEEEEEECCCCEEE
T ss_conf 356678789999979999999990898----0999968887013440478876640689997--3887999958996899
Q ss_pred EECCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE-CCCCCCCCCCCCCCEECCCCCC
Q ss_conf 968998236998258999985438972899999999679959999836873001210-3776542223210100266555
Q 001776 625 WDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTV-ESRTFDASRVASAAIVKAPAIG 703 (1015)
Q Consensus 625 wd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 703 (1015)
|+...+.....+.+| ...|++++|+|++++|++++.|+.|++|++.++ .....+ .+|...+..
T Consensus 309 ~~~~~~~~~~~~~gh--~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~-~~~~~~~~~h~~~v~~------------- 372 (611)
T 1nr0_A 309 VNPELGSIDQVRYGH--NKAITALSSSADGKTLFSADAEGHINSWDISTG-ISNRVFPDVHATMITG------------- 372 (611)
T ss_dssp EETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEECSSCSCSSCEEE-------------
T ss_pred EECCCCCCCEEECCC--CCCEEEEEEECCCCEEEEEECCCCEEEEECCCC-CEEEECCCCCCCEEEE-------------
T ss_conf 968899744698378--888899999189998999958984999978879-2563216677650789-------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEE-EECCCCCCCCCCEEEE
Q ss_conf 446666666665554456332234578888777566654222233320111210125886135-7304887687618999
Q 001776 704 TFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCR-SLRLPDNLTAMRVSRL 782 (1015)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~-~~~~~~~~~~~~i~~l 782 (1015)
..+++ ...+++++.|+.+++|+........... ... .......+
T Consensus 373 -----------------------~~~s~-------~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~-----~~~~~~~~ 417 (611)
T 1nr0_A 373 -----------------------IKTTS-------KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANK-----LSSQPLGL 417 (611)
T ss_dssp -----------------------EEECT-------TSCEEEEETTTEEEEECSSSSSSCTTSCCEEE-----CSSCEEEE
T ss_pred -----------------------EEECC-------CCCEEEEECCCCEEEEECCCCCCCCCCEEEEE-----CCCCCCEE
T ss_conf -----------------------99878-------99699998489668954688543565212001-----48997079
Q ss_pred EECCCCCEEEEECCCCEEEEEECCCCCCCCCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEC
Q ss_conf 99179728998015758999445666788898500014851017999752014688999999803899735997999971
Q 001776 783 IYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS 862 (1015)
Q Consensus 783 ~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~s 862 (1015)
+|+|++..++++ .++.+.+|+.. .... +. +...+.+++|+|||+++|+++
T Consensus 418 ~~s~dg~~~~~~-~~~~v~~~~~~------------------------~~~~--~~---~~~~v~~va~spdg~~lasgs 467 (611)
T 1nr0_A 418 AVSADGDIAVAA-CYKHIAIYSHG------------------------KLTE--VP---ISYNSSCVALSNDKQFVAVGG 467 (611)
T ss_dssp EECTTSSCEEEE-ESSEEEEEETT------------------------EEEE--EE---CSSCEEEEEECTTSCEEEEEE
T ss_pred EEECCCCEEEEE-ECCEEEEEECC------------------------CEEE--EE---CCCCCEEEEEECCCCEEEEEC
T ss_conf 980799699999-67639998489------------------------4346--40---688954999928998999968
Q ss_pred -CCEEEEEECCCCCE--EEEECCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCC-CEEEEE--ECCCCCCEEEEEEE
Q ss_conf -99199996778714--6893799999169997389995899997498199998213-628999--71755776799992
Q 001776 863 -GGKISLFNMMTFKT--MTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV-DEVKTK--LKGHQKRITGLAFS 936 (1015)
Q Consensus 863 -dg~i~iwd~~~~~~--~~~l~~~~~~i~~i~~sp~d~~~la~~~~dg~i~iwd~~~-~~~~~~--l~~h~~~v~~l~~s 936 (1015)
|++|++|++.++.. ... .+|...|++++|+| |+++|++++.|+.|++|++.+ ++++.. +.+|...|.+++|+
T Consensus 468 ~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fsp-dg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fs 545 (611)
T 1nr0_A 468 QDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWS 545 (611)
T ss_dssp TTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEEC
T ss_pred CCCEEEEEECCCCCEEEEEC-CCCCCCEEEEEECC-CCCEEEEECCCCCEEEEECCCCCCEEEEEEEEECCCCEEEEEEC
T ss_conf 99739999945992224101-57788607999989-99989999489989998857787223210264046642589989
Q ss_pred CCCCEEEEEECCCCEEEEECCCCCCCCCEEEEECCCC-CCCCCCCEEEEECCCCCEEEE-EECCEEEEEECC
Q ss_conf 7999999981898299998567651011588725998-656677359998569989999-958809999859
Q 001776 937 NTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGR-TASALADTRVQFHLDQTHLLA-VHETQIAIYEAP 1006 (1015)
Q Consensus 937 pdg~~l~s~s~dg~i~iWd~~~~~~~~~~~~~~~~~~-~~~~~~v~~l~fs~dg~~l~~-~~d~~i~vwd~~ 1006 (1015)
||+++|++++.|++|++|++.++... ......+| . +.|.+++|+||++ |++ +.|++|++|++.
T Consensus 546 pdg~~lasgs~D~~v~lW~~~~~~~~---~~~~~~~h~~---~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 546 PDNVRLATGSLDNSVIVWNMNKPSDH---PIIIKGAHAM---SSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp TTSSEEEEEETTSCEEEEETTCTTSC---CEEETTSSTT---SCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred CCCCEEEEEECCCCEEEEECCCCCCC---CCHHHCCCCC---CCEEEEEECCCCE-EEEECCCCCEEEEECC
T ss_conf 98997999979972999978875556---3264446765---6711899858997-9995288778998444
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=536.27 Aligned_cols=543 Identities=14% Similarity=0.201 Sum_probs=319.3
Q ss_pred CEEEEEECCCCCCCCCCCCCCC-------CCEEEEEEC-CCCCEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEE
Q ss_conf 4011343799988753237898-------941679840-69974378863689819999945871999975996237675
Q 001776 324 NILPVAYTPQSLGQSSYSTDDL-------PKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVK 395 (1015)
Q Consensus 324 ~i~~~~~s~~g~~i~~~~~~~~-------~~~~~~~l~-h~~~V~~i~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~ 395 (1015)
.|.+++|+|+|+.+++.+.|.. ....+.++. |...|.+++|+|+++ ++++|+.||.|++||+.+++.+..
T Consensus 617 ~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~~~~~~~~~- 694 (1249)
T 3sfz_A 617 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDS-YIATCSADKKVKIWDSATGKLVHT- 694 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEE-
T ss_pred CEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCC-EEEEEECCCEEEEEECCCCCEEEE-
T ss_conf 489999879999899994889499999899978887606777789999926999-899981899599987799936899-
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCEEEEEECC--CCCEEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEEEC
Q ss_conf 337875167885542223566888879999823--999899998798699998118930112358822347654999944
Q 001776 396 SFKVWELGACSMPLQASLSSDYTASVNRVMWSP--DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY 473 (1015)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp--dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~ 473 (1015)
+.+|...|.+++|+| ++.++++|+.|+.|++||+.++.... .+.+|...|++++|+|
T Consensus 695 ------------------~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~---~~~~h~~~v~~~~~sp 753 (1249)
T 3sfz_A 695 ------------------YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN---TMFGHTNSVNHCRFSP 753 (1249)
T ss_dssp ------------------EECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEE---EECCCSSCEEEEEECS
T ss_pred ------------------ECCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCHHH---EECCCCCCEEEEEEEC
T ss_conf ------------------9589973799998408996599998089709999899963422---0127779788999925
Q ss_pred CCCCEEEEEEECCCEEEEEECCCCCEEEEEECC-------------CCCEEEEEECCCCCCCEEEEEECCCEEEEEECCC
Q ss_conf 999359999938991999986899467995078-------------8997998301369964999982799299996789
Q 001776 474 PNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH-------------ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN 540 (1015)
Q Consensus 474 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h-------------~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~ 540 (1015)
+++ ++++++.|+.|++||+.++.....+... ...+.+++|+++ +..+++++ ++.+.+|++.+
T Consensus 754 ~~~--~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--g~~l~~~~-~~~v~~~d~~~ 828 (1249)
T 3sfz_A 754 DDE--LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSAD--GDKIIVAA-KNKVLLFDIHT 828 (1249)
T ss_dssp STT--EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTT--SSEEEEEE-TTEEEEEETTT
T ss_pred CCC--EEEEEECCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCC--CCEEEEEC-CCCEEEEEECC
T ss_conf 999--89999789859999688886553020232102467764456501799999789--98899975-89599999568
Q ss_pred CCCEEEEC-CCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEECC
Q ss_conf 98313314-99996389999789999999851789983699996898703478507898784899992799999999589
Q 001776 541 LGSRVDYD-APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE 619 (1015)
Q Consensus 541 ~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 619 (1015)
........ .+...+.+++|+|++..+++++.++ .+.+|+..++.....+.+|.. .+.+++|+|++..+++++.|
T Consensus 829 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg----~v~vwd~~~~~~~~~~~~h~~-~v~~v~~spdg~~l~s~s~d 903 (1249)
T 3sfz_A 829 SGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQY----CVELWNIDSRLKVADCRGHLS-WVHGVMFSPDGSSFLTASDD 903 (1249)
T ss_dssp CCEEEEEECSSSSCCCEEEECSSTTEEEEECSSS----CEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETT
T ss_pred CCCEEEECCCCCCCEEEEEECCCCCEEEEEECCC----EEEEEECCCCCEEEECCCCCC-CEEEEEECCCCCEEEEEECC
T ss_conf 9723577478777607999827888899994798----699998678956532278766-56899998999989999589
Q ss_pred CCEEEEECCCCCE-----------------------------EEEEECC------CCCCCCCEEEECCCCCEEEEEECCC
Q ss_conf 8299996899823-----------------------------6998258------9999854389728999999996799
Q 001776 620 FMIKFWDMDNVNL-----------------------------LASIDAD------GGLQASPCIRFNKEGILLAVSTNDN 664 (1015)
Q Consensus 620 g~i~iwd~~~~~~-----------------------------~~~~~~~------~~~~~v~~i~~s~~~~~l~s~~~dg 664 (1015)
+.|++|++..... ....... .....+.+++|+|++.++++++.+|
T Consensus 904 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g 983 (1249)
T 3sfz_A 904 QTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDG 983 (1249)
T ss_dssp SCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTS
T ss_pred CEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEECCCCCEEEEEECCCCCEEEEECCCC
T ss_conf 72898874665201021133103689759986899813776248984476508972567278999958997799986999
Q ss_pred CEEEEECCCCCEEEEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 59999836873001210377654222321010026655544666666666555445633223457888877756665422
Q 001776 665 GIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIA 744 (1015)
Q Consensus 665 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 744 (1015)
.|++|+..++ .....+.+|...+..+ .| .++++.+++
T Consensus 984 ~i~i~d~~~~-~~~~~~~~h~~~v~~l------------------------------------~~------s~dg~~l~s 1020 (1249)
T 3sfz_A 984 AIKIIELPNN-RVFSSGVGHKKAVRHI------------------------------------QF------TADGKTLIS 1020 (1249)
T ss_dssp CCEEEETTTT-SCEEECCCCSSCCCCE------------------------------------EE------CSSSSCEEE
T ss_pred CEEEEECCCC-CEEEECCCCCCCEEEE------------------------------------EE------CCCCCEEEE
T ss_conf 8899975787-2344303677716899------------------------------------99------899998999
Q ss_pred CCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCC---------------
Q ss_conf 22333201112101258861357304887687618999991797289980157589994456667---------------
Q 001776 745 DEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNE--------------- 809 (1015)
Q Consensus 745 ~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~iw~~~~~~--------------- 809 (1015)
++.|+.+++|++.... ... ...|...+.++.|++++. +++++.||.+++|++..+.
T Consensus 1021 ~~~dg~i~vwd~~~~~----~~~----~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~ 1091 (1249)
T 3sfz_A 1021 SSEDSVIQVWNWQTGD----YVF----LQAHQETVKDFRLLQDSR-LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSC 1091 (1249)
T ss_dssp ECSSSBEEEEETTTTE----EEC----CBCCSSCEEEEEECSSSE-EEEEESSSEEEEEETTTTCCCEEEECCSSCCCCE
T ss_pred ECCCCEEEEEECCCCC----EEE----EECCCCCEEEEEECCCCC-EEEEECCCCEEEEECCCCCEEEEECCCCCCEEEE
T ss_conf 8699879999879996----689----852787389999908995-8999788968998889886558874668848999
Q ss_pred -CCCCCCEEC----CCCCEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEC-CCEEEEEECCCCCEEEEE---
Q ss_conf -888985000----14851017999752014688999999803899735997999971-991999967787146893---
Q 001776 810 -RNSTGKATT----NQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTF--- 880 (1015)
Q Consensus 810 -~~~~~~~~~----~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~l--- 880 (1015)
+++++.... ...+.+|+..++..... +.+ |...|++++|+||++++++++ ||.|++||+.+++.+..+
T Consensus 1092 ~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~-l~~--h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~ 1168 (1249)
T 3sfz_A 1092 AISSDATKFSSTSADKTAKIWSFDLLSPLHE-LKG--HNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPI 1168 (1249)
T ss_dssp EECSSSSSCEEECCSSCCCEECSSSSSCSBC-CCC--CSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCC
T ss_pred EECCCCCEEEEECCCCCEEEEECCCCCEEEE-ECC--CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCC
T ss_conf 9989999899984999489987898500125-506--8776799999799998999828997999988999457885144
Q ss_pred ------CCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEE
Q ss_conf ------79999916999738999589999749819999821362899971755776799992799999998189829999
Q 001776 881 ------MPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVW 954 (1015)
Q Consensus 881 ------~~~~~~i~~i~~sp~d~~~la~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iW 954 (1015)
.+|...|++++|+| |++++++++ |.|++||+.+++.+..+.+|...|++++|+||+.++++++.||.|++|
T Consensus 1169 ~~~~~~~~~~~~v~~l~fs~-dg~~l~s~~--g~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw 1245 (1249)
T 3sfz_A 1169 SVEEGTATHGGWVTDVCFSP-DSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYIL 1245 (1249)
T ss_dssp C-------CCSCCCEEEECT-TSSCEEEES--SSEEEBCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTCCEEEE
T ss_pred CCCCCCCCCCCEEEEEEECC-CCCEEEECC--CEEEEEECCCCCEEEEEECCCCCCCEEEECCCCCEEEEECCCCEEEEE
T ss_conf 44421025674289999978-999899779--859998988895004640047753279997898779996688179997
Q ss_pred ECC
Q ss_conf 856
Q 001776 955 STD 957 (1015)
Q Consensus 955 d~~ 957 (1015)
++.
T Consensus 1246 ~l~ 1248 (1249)
T 3sfz_A 1246 QVL 1248 (1249)
T ss_dssp CCC
T ss_pred EEC
T ss_conf 643
No 5
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=519.25 Aligned_cols=535 Identities=22% Similarity=0.375 Sum_probs=448.4
Q ss_pred EEEEE-CCCCCEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 67984-06997437886368981999994587199997599623767533787516788554222356688887999982
Q 001776 349 VVMTL-NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (1015)
Q Consensus 349 ~~~~l-~h~~~V~~i~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s 427 (1015)
..+.| +|.+.|++++|||||+ ++|+|+.|+.|+|||. +++.+.. +.+|...|++++|+
T Consensus 8 e~~~L~GH~~~V~~~a~spdg~-~las~~~d~~v~iWd~-~~~~~~~-------------------l~gh~~~V~~l~fs 66 (577)
T 2ymu_A 8 ERNRLEAHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQT-------------------LTGHSSSVWGVAFS 66 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEECT-TSCEEEE-------------------EECCSSCEEEEEEC
T ss_pred EEEEECCCCCCEEEEEECCCCC-EEEEEECCCEEEEEEC-CCCEEEE-------------------EECCCCCEEEEEEC
T ss_conf 9439878998579999989989-9999938998999979-9978999-------------------96898998999998
Q ss_pred CCCCEEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEECCC
Q ss_conf 39998999987986999981189301123588223476549999449993599999389919999868994679950788
Q 001776 428 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE 507 (1015)
Q Consensus 428 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~ 507 (1015)
||+++||+++.|+.|++||.. ++.+. .+.+|...|.+++|+|+++ ++++++.|+.+++|+. .........++.
T Consensus 67 pdg~~las~~~d~~i~vWd~~-~~~~~---~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~-~~~~~~~~~~~~ 139 (577)
T 2ymu_A 67 PDGQTIASASDDKTVKLWNRN-GQLLQ---TLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNR-NGQLLQTLTGHS 139 (577)
T ss_dssp TTSSEEEEEETTSCEEEEETT-SCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEET-TCCEEEEECCCS
T ss_pred CCCCEEEEEECCCEEEEEECC-CCEEE---EEECCCCCEEEEEECCCCC--EEEEECCCCCEEECCC-CCCEEEECCCCC
T ss_conf 999999999698979999899-97899---9978999889999989999--8999807983352023-552001104777
Q ss_pred CCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCC
Q ss_conf 99799830136996499998279929999678998313314999963899997899999998517899836999968987
Q 001776 508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG 587 (1015)
Q Consensus 508 ~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~ 587 (1015)
..+..+.+.++. ..+++++.++.+++|+... ........+...+..+.++|++.++++++.++ .+++|+. ++
T Consensus 140 ~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~v~~w~~-~~ 211 (577)
T 2ymu_A 140 SSVWGVAFSPDG--QTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASDDK----TVKLWNR-NG 211 (577)
T ss_dssp SCEEEEEECTTS--SCEEEEETTSEEEEECTTS-CEEEEEECCSSCEEEEEECTTSSCEEEEETTS----EEEEECT-TS
T ss_pred CCEEEEEEECCC--CCCEECCCCCCEECCCCCE-EEEEECCCCCCCEEEEEECCCCCEEEEECCCC----EEEEEEC-CC
T ss_conf 743555420377--6320025553100000000-00000268776356654169977899985999----8999949-99
Q ss_pred EEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEE
Q ss_conf 03478507898784899992799999999589829999689982369982589999854389728999999996799599
Q 001776 588 AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIK 667 (1015)
Q Consensus 588 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~ 667 (1015)
+....+.+|.. .+.+++|+|++..+++++.|+.|++|+. +++.+..+..+ ...|.+++|+|++..+++++.|+.++
T Consensus 212 ~~~~~~~~~~~-~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~--~~~v~~v~~~~d~~~l~~~~~d~~i~ 287 (577)
T 2ymu_A 212 QLLQTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH--SSSVNGVAFRPDGQTIASASDDKTVK 287 (577)
T ss_dssp CEEEEEECCSS-CEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CEEEEEECCCC-CEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEEECC--CCCEEEEEECCCCCEEEEEECCCEEE
T ss_conf 68999946889-8899999799999999918998999959-99799998068--89879999968999999995999799
Q ss_pred EEECCCCCEEEEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99836873001210377654222321010026655544666666666555445633223457888877756665422223
Q 001776 668 ILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEA 747 (1015)
Q Consensus 668 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 747 (1015)
+|+... +....+.+|...+..+ .| .+++..+++++.
T Consensus 288 ~w~~~~--~~~~~~~~h~~~v~~~------------------------------------~~------~~~~~~l~t~~~ 323 (577)
T 2ymu_A 288 LWNRNG--QLLQTLTGHSSSVWGV------------------------------------AF------SPDGQTIASASD 323 (577)
T ss_dssp EEETTS--CEEEEECCCSSCEEEE------------------------------------EE------CTTSSEEEEEET
T ss_pred EEECCC--CEEEEEECCCCCEEEE------------------------------------EE------CCCCCEEEEEEC
T ss_conf 994899--5899970688976999------------------------------------99------999999999969
Q ss_pred CCCEEEEEECCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCEECCCCCEECCC
Q ss_conf 33201112101258861357304887687618999991797289980157589994456667888985000148510179
Q 001776 748 VEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQP 827 (1015)
Q Consensus 748 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~d~ 827 (1015)
|+.+++|+... .....+ .+|...+.+++|+|+++.+++++.|+.+++|+...
T Consensus 324 d~~i~~w~~~~----~~~~~~----~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-------------------- 375 (577)
T 2ymu_A 324 DKTVKLWNRNG----QHLQTL----TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-------------------- 375 (577)
T ss_dssp TSCEEEEETTS----CEEEEE----CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC--------------------
T ss_pred CCEEEEEECCC----CEEEEE----ECCCCCEEEEEECCCCCEEEEEECCCEEEEECCCC--------------------
T ss_conf 99599996999----725787----47889779999989999999996999899990899--------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEC-CCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECC
Q ss_conf 99752014688999999803899735997999971-99199996778714689379999916999738999589999749
Q 001776 828 PSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED 906 (1015)
Q Consensus 828 ~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~l~~~~~~i~~i~~sp~d~~~la~~~~d 906 (1015)
..+. .+.+ |...|.+++|+||++++++++ |+.|++|+. +++.+..+.+|...|++++|+| +++++++++.|
T Consensus 376 ---~~~~-~~~~--~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d 447 (577)
T 2ymu_A 376 ---QLLQ-TLTG--HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDD 447 (577)
T ss_dssp ---CEEE-EEEC--CSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECT-TSSEEEEEETT
T ss_pred ---CEEE-EECC--CCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEECCCCCCEEEEEECC-CCCEEEEECCC
T ss_conf ---7899-8527--8897489999899999999949998999969-9978989628899757999989-99999999399
Q ss_pred CEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCEEEEEC
Q ss_conf 81999982136289997175577679999279999999818982999985676510115887259986566773599985
Q 001776 907 SSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFH 986 (1015)
Q Consensus 907 g~i~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs 986 (1015)
+.|++|+. +++.+..+.+|...|++++|+|++++|++++.|+.|++|+.. ++ .+....+|. +.|++++|+
T Consensus 448 ~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~~-----~~~~~~~h~---~~v~~l~~s 517 (577)
T 2ymu_A 448 KTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ-----LLQTLTGHS---SSVRGVAFS 517 (577)
T ss_dssp SEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-SC-----EEEEEECCS---SCEEEEEEC
T ss_pred CEEEEEEC-CCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEECCC-CC-----EEEEEECCC---CCEEEEEEC
T ss_conf 98999979-998899972789977899996999999999198979999399-97-----899986799---998999991
Q ss_pred CCCCEEEEE-ECCEEEEEECCCCEEECCC
Q ss_conf 699899999-5880999985992274057
Q 001776 987 LDQTHLLAV-HETQIAIYEAPKLECLKQV 1014 (1015)
Q Consensus 987 ~dg~~l~~~-~d~~i~vwd~~~g~~l~~~ 1014 (1015)
|||++|+++ .|+.|++||. +++++..+
T Consensus 518 ~dg~~l~s~~~dg~v~lwd~-~~~~~~~~ 545 (577)
T 2ymu_A 518 PDGQTIASASDDKTVKLWNR-NGQLLQTL 545 (577)
T ss_dssp TTSSCEEEEETTSEEEEECT-TSCEEEEE
T ss_pred CCCCEEEEEECCCEEEEEEC-CCCEEEEE
T ss_conf 89999999989699999969-99789897
No 6
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=506.98 Aligned_cols=537 Identities=15% Similarity=0.192 Sum_probs=421.4
Q ss_pred CCCCEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEE
Q ss_conf 69974378863689819999945871999975996237675337875167885542223566888879999823999899
Q 001776 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1015)
Q Consensus 355 h~~~V~~i~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~la 434 (1015)
+.+.+.+++|+|+|+ ++++++ ++.|++|++.+++.... +.+|...|++++|+|||++||
T Consensus 17 ~~g~~~~~~~spdg~-~l~~~~-~~~v~l~~~~~~~~~~~-------------------~~~h~~~v~~~~~spdg~~la 75 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGD-KIQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYCA 75 (611)
T ss_dssp CTTCCCCCEECTTSS-EEEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEEE
T ss_pred CCCCEEEEEECCCCC-EEEECC-CCEEEEECCCCCCCCEE-------------------ECCCCCCEEEEEECCCCCEEE
T ss_conf 068236976679999-799679-99799945787242737-------------------658998659999999996899
Q ss_pred EEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCCCEEEEEEECC----CEEEEEECCCCCEEEEEECCCCCE
Q ss_conf 9987986999981189301123588223476549999449993599999389----919999868994679950788997
Q 001776 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED----RVIKVWDAVTGTKQYIFEGHESPV 510 (1015)
Q Consensus 435 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~h~~~v 510 (1015)
+|+.|+.|++||+.+++... ...+.+|.+.|.+++|+|+++ .+++++.+ +.|++|| .+.....+.+|...|
T Consensus 76 sg~~d~~v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v 150 (611)
T 1nr0_A 76 SGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAM 150 (611)
T ss_dssp EEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCE
T ss_pred EEECCCCEEEEECCCCCCEE-EEEECCCCCCEEEEEECCCCC--EEEEEECCCCCEEEEEEEE--CCCCCCEECCCCCCC
T ss_conf 99489978994898984156-676225578448999899999--7999989977366999963--899763254788983
Q ss_pred EEEEECCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEE
Q ss_conf 99830136996499998279929999678998313314999963899997899999998517899836999968987034
Q 001776 511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK 590 (1015)
Q Consensus 511 ~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~ 590 (1015)
.+++|+|+.. ..+++++.|+.|++||.........+..|...|.+++|+|+++++++++.|+ .|++||..+++..
T Consensus 151 ~~v~f~p~~~-~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~----~i~lwd~~~g~~~ 225 (611)
T 1nr0_A 151 NSVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG----TIVLYNGVDGTKT 225 (611)
T ss_dssp EEEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTS----CEEEEETTTCCEE
T ss_pred EEEEECCCCC-EEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCC----CEEEEECCCCCEE
T ss_conf 6999889998-2999992898099997999757665200257169999979999899998999----1999889998286
Q ss_pred EEEE-------CCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCC-CCCCCCEEEECCCCCEEEEEEC
Q ss_conf 7850-------7898784899992799999999589829999689982369982589-9998543897289999999967
Q 001776 591 RTYH-------GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADG-GLQASPCIRFNKEGILLAVSTN 662 (1015)
Q Consensus 591 ~~~~-------~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~i~~s~~~~~l~s~~~ 662 (1015)
..+. +|.. .+.+++|+|++.++++++.|+.|++||+.+++.+..+..+. .......+.| ++..+++++.
T Consensus 226 ~~~~~~~~~~~~h~~-~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~ 302 (611)
T 1nr0_A 226 GVFEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISA 302 (611)
T ss_dssp EECBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEET
T ss_pred EEECCCCCCCCCCCC-CEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEE--CCCEEEEEEC
T ss_conf 651366432356678-7899999799999999908980999968887013440478876640689997--3887999958
Q ss_pred CCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99599998368730012103776542223210100266555446666666665554456332234578888777566654
Q 001776 663 DNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPK 742 (1015)
Q Consensus 663 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 742 (1015)
|+.+++|+...+ .....+.+|...+..+ .| .++++.+
T Consensus 303 d~~i~~~~~~~~-~~~~~~~gh~~~v~~l------------------------------------~~------spdg~~l 339 (611)
T 1nr0_A 303 NGFINFVNPELG-SIDQVRYGHNKAITAL------------------------------------SS------SADGKTL 339 (611)
T ss_dssp TCCEEEEETTTT-EEEEEECCCSSCEEEE------------------------------------EE------CTTSSEE
T ss_pred CCCEEEEECCCC-CCCEEECCCCCCEEEE------------------------------------EE------ECCCCEE
T ss_conf 996899968899-7446983788888999------------------------------------99------1899989
Q ss_pred CCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCEECCCCC
Q ss_conf 22223332011121012588613573048876876189999917972899801575899944566678889850001485
Q 001776 743 IADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAP 822 (1015)
Q Consensus 743 ~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 822 (1015)
++++.|+++++|++.... ... ....+|...+.+++|++++ .+++++.|+.+++|+..........
T Consensus 340 ~s~s~D~~v~~Wd~~~~~----~~~--~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~-------- 404 (611)
T 1nr0_A 340 FSADAEGHINSWDISTGI----SNR--VFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSK-------- 404 (611)
T ss_dssp EEEETTSCEEEEETTTCC----EEE--CSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTTS--------
T ss_pred EEEECCCCEEEEECCCCC----EEE--ECCCCCCCEEEEEEECCCC-CEEEEECCCCEEEEECCCCCCCCCC--------
T ss_conf 999589849999788792----563--2166776507899987899-6999984896689546885435652--------
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCEEEE
Q ss_conf 10179997520146889999998038997359979999719919999677871468937999991699973899958999
Q 001776 823 QLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAI 902 (1015)
Q Consensus 823 ~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~l~~~~~~i~~i~~sp~d~~~la~ 902 (1015)
..... ......+++++|+++.+++++++.+++|+ .++ +..+. +...+.+++|+| |++++++
T Consensus 405 ---------~~~~~-----~~~~~~~~~~s~dg~~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~las 465 (611)
T 1nr0_A 405 ---------AVANK-----LSSQPLGLAVSADGDIAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAV 465 (611)
T ss_dssp ---------CCEEE-----CSSCEEEEEECTTSSCEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEE
T ss_pred ---------EEEEE-----CCCCCCEEEEECCCCEEEEEECCEEEEEE--CCC-EEEEE-CCCCCEEEEEEC-CCCEEEE
T ss_conf ---------12001-----48997079980799699999676399984--894-34640-688954999928-9989999
Q ss_pred EECCCEEEEEECCCCEE--EEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCC-CCCCCCEEEEECCCCCCCCCC
Q ss_conf 97498199998213628--999717557767999927999999981898299998567-651011588725998656677
Q 001776 903 GMEDSSIQIYNVRVDEV--KTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDG-WEKQASKFLTIPNGRTASALA 979 (1015)
Q Consensus 903 ~~~dg~i~iwd~~~~~~--~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~ 979 (1015)
|+.|+.|++|++.++.. +.. .+|...|++++|+||+++|++++.|++|++|++.+ ++.... ....+| .+.
T Consensus 466 gs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~---~~~~~H---~~~ 538 (611)
T 1nr0_A 466 GGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT---NSWTFH---TAK 538 (611)
T ss_dssp EETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC---CCCCCC---SSC
T ss_pred ECCCCEEEEEECCCCCEEEEEC-CCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCEEEE---EEEEEC---CCC
T ss_conf 6899739999945992224101-577886079999899998999948998999885778722321---026404---664
Q ss_pred CEEEEECCCCCEEEEE-ECCEEEEEECCCCE
Q ss_conf 3599985699899999-58809999859922
Q 001776 980 DTRVQFHLDQTHLLAV-HETQIAIYEAPKLE 1009 (1015)
Q Consensus 980 v~~l~fs~dg~~l~~~-~d~~i~vwd~~~g~ 1009 (1015)
|.+++|+|||++|+++ .|++|++|++.+++
T Consensus 539 V~~v~fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 539 VACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred EEEEEECCCCCEEEEEECCCCEEEEECCCCC
T ss_conf 2589989989979999799729999788755
No 7
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=495.08 Aligned_cols=546 Identities=13% Similarity=0.214 Sum_probs=338.0
Q ss_pred CCCCEEEEEECCCCCEEEEEEECCCEEEEEECCCC----CEEEEEEEEEEECCCCCCCCCCCCCCCCCCC-EEEEEECC-
Q ss_conf 69974378863689819999945871999975996----2376753378751678855422235668888-79999823-
Q 001776 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSR----ERIAVKSFKVWELGACSMPLQASLSSDYTAS-VNRVMWSP- 428 (1015)
Q Consensus 355 h~~~V~~i~~sp~g~~lla~g~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~i~~sp- 428 (1015)
|.+.|.+++|+|+++ ++++++ ++.|.+|++.++ +.... +.+|... |++++|+|
T Consensus 17 ~~~~v~~~~~spdg~-~l~~~~-~~~v~v~~~~~~~~~~~~~~~-------------------~~~h~~~~v~~~~~sp~ 75 (615)
T 1pgu_A 17 QRNFTTHLSYDPTTN-AIAYPC-GKSAFVRCLDDGDSKVPPVVQ-------------------FTGHGSSVVTTVKFSPI 75 (615)
T ss_dssp CTTCCCCCEEETTTT-EEEEEE-TTEEEEEECCSSCCSSCSEEE-------------------ECTTTTSCEEEEEECSS
T ss_pred CCCCEEEEEECCCCC-EEEEEC-CCEEEEEECCCCCCCCCCCEE-------------------EECCCCCEEEEEEECCC
T ss_conf 658536899889999-799935-984999977788776514318-------------------80578844999997967
Q ss_pred -CCCEEEEEECCCEEEEEECCCCC-----EEEEEEEEECCCCCEEEEEEECCCCCEEEEEEECC----CEEEEEECCCCC
Q ss_conf -99989999879869999811893-----01123588223476549999449993599999389----919999868994
Q 001776 429 -DGTLFGVAYSKHIVHLYTYHGGD-----ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED----RVIKVWDAVTGT 498 (1015)
Q Consensus 429 -dg~~las~~~dg~i~iwd~~~~~-----~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~s~d----g~i~iwd~~~~~ 498 (1015)
++++|++++.||.|++|++.++. .......+..|...|.+++|+|+++ ++++++.+ +.|++|| .++
T Consensus 76 ~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~~~ 151 (615)
T 1pgu_A 76 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--SGN 151 (615)
T ss_dssp TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--TCC
T ss_pred CCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCHHHCCCCCEEEEEEECCCC--EEEEECCCCCCCCEEEEEE--CCC
T ss_conf 899889996489879997688876554455420001112566379999907999--8999316877755799997--898
Q ss_pred EEEEEECCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCC---CEEEEEECCC-CCEEEEEEECCC
Q ss_conf 679950788997998301369964999982799299996789983133149999---6389999789-999999851789
Q 001776 499 KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGH---SSTMMAYSAD-GARLFSCGTNKE 574 (1015)
Q Consensus 499 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~i~~~~~s~~-~~~l~~~~~d~~ 574 (1015)
.+..+.+|...|.+++|+++.. ..+++++.|+.|++||+........+..+.. .+.+++|+|+ ++++++++.++
T Consensus 152 ~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg- 229 (615)
T 1pgu_A 152 SLGEVSGHSQRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR- 229 (615)
T ss_dssp EEEECCSCSSCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTC-
T ss_pred CCEEEECCCCCEEEEEECCCCC-CEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCC-
T ss_conf 1031306774388999887899-68999957995999969996101320256777742899997897788899986898-
Q ss_pred CCCEEEEEECCCCEEEEEE-E---CCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCC--CCCCCCEE
Q ss_conf 9836999968987034785-0---7898784899992799999999589829999689982369982589--99985438
Q 001776 575 GESYLVEWNESEGAVKRTY-H---GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADG--GLQASPCI 648 (1015)
Q Consensus 575 ~~~~i~iwd~~~~~~~~~~-~---~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~v~~i 648 (1015)
.|++||+.+++.+..+ . .|.. .+.+++|+ ++..+++++.|+.|++||+.+++.+..+..+. ....+.++
T Consensus 230 ---~i~vwd~~~~~~~~~~~~~~~~~~~-~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 304 (615)
T 1pgu_A 230 ---KISCFDGKSGEFLKYIEDDQEPVQG-GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV 304 (615)
T ss_dssp ---CEEEEETTTCCEEEECCBTTBCCCS-CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEE
T ss_pred ---EEEEEECCCCCEEEEECCCCCCCCC-CEEEEEEC-CCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCEEEE
T ss_conf ---0899989999785895254445677-55899981-899799984899489997888927878847877545714699
Q ss_pred EECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 97289999999967995999983687300121037765422232101002665554466666666655544563322345
Q 001776 649 RFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVG 728 (1015)
Q Consensus 649 ~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1015)
.|. ++..+++++.|+.+++|++.++ +....+.+|...+..+ .
T Consensus 305 ~~~-~~~~l~~~~~~g~i~~~d~~~~-~~~~~~~~~~~~v~~~------------------------------------~ 346 (615)
T 1pgu_A 305 VAT-GNGRIISLSLDGTLNFYELGHD-EVLKTISGHNKGITAL------------------------------------T 346 (615)
T ss_dssp EEE-ETTEEEEEETTSCEEEEETTEE-EEEEEECCCSSCEEEE------------------------------------E
T ss_pred EEC-CCCEEEEEECCCCEEEEECCCC-CEEEEEECCCCCEEEE------------------------------------E
T ss_conf 918-9976999978997899988899-2889994777878999------------------------------------9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCC
Q ss_conf 78888777566654222233320111210125886135730488768761899999179728998015758999445666
Q 001776 729 MSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRN 808 (1015)
Q Consensus 729 ~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~iw~~~~~ 808 (1015)
| ++ +++++.|+.+++|++. .+. ..|...|.+++| +++..+++++.|+.+++|++...
T Consensus 347 ~-~~---------l~~~~~dg~i~~w~~~---------~~~---~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~ 403 (615)
T 1pgu_A 347 V-NP---------LISGSYDGRIMEWSSS---------SMH---QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKH 403 (615)
T ss_dssp T-TT---------TEEEETTSCEEETTTT---------EEE---CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEE
T ss_pred E-CC---------CEEECCCCEEEEEECH---------HHC---CCCCCCEEEEEE-CCCCEEEEEECCCCEEEEECCCC
T ss_conf 5-67---------4898799959998752---------415---755685179997-89867999958997999886667
Q ss_pred C---------CCCCCCEE---CCCCCEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEC--CCEEEEEECCCC
Q ss_conf 7---------88898500---014851017999752014688999999803899735997999971--991999967787
Q 001776 809 E---------RNSTGKAT---TNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMMTF 874 (1015)
Q Consensus 809 ~---------~~~~~~~~---~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~ 874 (1015)
. .++++... ....+.+|+..++..+... . +...+.+++|+ ++++++++ |+.|++|++.++
T Consensus 404 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~ 477 (615)
T 1pgu_A 404 EFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSV-R---LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDL 477 (615)
T ss_dssp ECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEE-E---CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEE
T ss_pred CCCCCCEEEEECCCCCEEEEECCCCEEEEECCCCCEEEEC-C---CCCCCEEEEEC--CCEEEEEECCCCEEEEEECCCC
T ss_conf 6367846999828987899967982699944678665551-5---67872077883--8889996568986999988885
Q ss_pred CEE-EEECCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCEEEEEECC-CCCCEEEEEEEC----------CCCEE
Q ss_conf 146-893799999169997389995899997498199998213628999717-557767999927----------99999
Q 001776 875 KTM-TTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKG-HQKRITGLAFSN----------TLNVL 942 (1015)
Q Consensus 875 ~~~-~~l~~~~~~i~~i~~sp~d~~~la~~~~dg~i~iwd~~~~~~~~~l~~-h~~~v~~l~~sp----------dg~~l 942 (1015)
+.. ..+.+|...|++++|+| ++++|++++.|+.|++|++.+++++..+.+ |...|++++|+| ++++|
T Consensus 478 ~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l 556 (615)
T 1pgu_A 478 EVSFDLKTPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLV 556 (615)
T ss_dssp EEEEECSSCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEE
T ss_pred CCCCCCCCCCCCCEEEEEECC-CCCEEEECCCCCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCEE
T ss_conf 435333677657507999989-9998998179985998657777624676047887146999768323453324688889
Q ss_pred EEEECCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCEEEEECCCCCEEEE-EECCEEEEEECCCC
Q ss_conf 9981898299998567651011588725998656677359998569989999-95880999985992
Q 001776 943 VSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKL 1008 (1015)
Q Consensus 943 ~s~s~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~vwd~~~g 1008 (1015)
++++.|+.|++|++.++. ..+....+|. +.|.+++|+||++ |++ +.|+.|++|++.++
T Consensus 557 ~~~~~dg~i~iw~~~~~~----~~~~~~~~h~---~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~~ 615 (615)
T 1pgu_A 557 ATGSLDTNIFIYSVKRPM----KIIKALNAHK---DGVNNLLWETPST-LVSSGADACIKRWNVVLE 615 (615)
T ss_dssp EEEETTSCEEEEESSCTT----CCEEETTSST---TCEEEEEEEETTE-EEEEETTSCEEEEEEC--
T ss_pred EEECCCCCEEEEECCCCC----EECHHHHCCC---CCEEEEEECCCCC-EEEECCCCEEEEEEEECC
T ss_conf 998179719999778885----4031133594---3058999738997-288459963999960159
No 8
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=481.49 Aligned_cols=609 Identities=12% Similarity=0.100 Sum_probs=425.4
Q ss_pred EEEEEECCCCCEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 16798406997437886368981999994587199997599623767533787516788554222356688887999982
Q 001776 348 TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (1015)
Q Consensus 348 ~~~~~l~h~~~V~~i~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s 427 (1015)
.....++|...|++++|+|+++ ++|+|+.||.|++|+....+.... ..|...|++++|+
T Consensus 9 ~~~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~~--------------------~~~~~~V~~l~fs 67 (902)
T 2oaj_A 9 AETNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVIK--------------------LEDRSAIKEMRFV 67 (902)
T ss_dssp EEEEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEEE--------------------CSSCCCEEEEEEE
T ss_pred CCCCCCCCCCCCEEEEECCCCC-EEEEEECCCEEEEEECCCCEEEEE--------------------CCCCCCEEEEEEC
T ss_conf 1202168899848999979999-899992979899996899479998--------------------6899977999990
Q ss_pred CCCCEEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEE-------
Q ss_conf 3999899998798699998118930112358822347654999944999359999938991999986899467-------
Q 001776 428 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ------- 500 (1015)
Q Consensus 428 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~s~dg~i~iwd~~~~~~~------- 500 (1015)
| +++|++++.|+.|++||+.+++.+. .+. |...|++++|+|+++ ++++|+.||.|++||+.++.+.
T Consensus 68 p-g~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~ 140 (902)
T 2oaj_A 68 K-GIYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNL 140 (902)
T ss_dssp T-TTEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCH
T ss_pred C-CCEEEEEECCCEEEEEECCCCCEEE---EEC-CCCCEEEEEECCCCC--EEEEECCCCCEEEEECCCCCCCCCEECCC
T ss_conf 8-9889999895959999899996899---974-899879999879999--89999499929999999996265030432
Q ss_pred ----EEEECCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCC------------------CCCEEEEE
Q ss_conf ----99507889979983013699649999827992999967899831331499------------------99638999
Q 001776 501 ----YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP------------------GHSSTMMA 558 (1015)
Q Consensus 501 ----~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------~~~i~~~~ 558 (1015)
..+.+|...|.+++|+|.. +..+++++.|+.| +||++.......+..+ ...|.+++
T Consensus 141 ~~~~~~~~~h~~~V~sl~~sp~~-~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~ 218 (902)
T 2oaj_A 141 QKSSFFPAARLSPIVSIQWNPRD-IGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSL 218 (902)
T ss_dssp HHHHTCSSSCCCCCCEEEEETTE-EEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEE
T ss_pred CCCCCCCCCCCCCEEEEEECCCC-CCEEEEEECCCCE-EEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 10002544578973899976699-9989999189849-998778965799833557767776544332345677768999
Q ss_pred ECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEE--E---ECC------------CCCCEEEEEEEC----CC-CEEEEE
Q ss_conf 9789999999851789983699996898703478--5---078------------987848999927----99-999999
Q 001776 559 YSADGARLFSCGTNKEGESYLVEWNESEGAVKRT--Y---HGL------------GKRSVGVVQFDT----TK-NRFLAA 616 (1015)
Q Consensus 559 ~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~--~---~~~------------~~~~i~~i~~~~----~~-~~l~~~ 616 (1015)
|+|++.++++++.|+ .|++||..+++.+.. + ..| +...|.+++|++ ++ ..++++
T Consensus 219 fspdg~~lasgs~Dg----~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg 294 (902)
T 2oaj_A 219 YHPNSLHIITIHEDN----SLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISH 294 (902)
T ss_dssp ECTTSSEEEEEETTC----CEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEE
T ss_pred ECCCCCEEEEEECCC----EEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEC
T ss_conf 859999999998999----3999987899688888501234578777678888555677457999734999887899968
Q ss_pred ECC-----CCEEEEECC------------------CCCEEEEEECCCCCCCCCEEEECC----------CCCEEEEEECC
Q ss_conf 589-----829999689------------------982369982589999854389728----------99999999679
Q 001776 617 GDE-----FMIKFWDMD------------------NVNLLASIDADGGLQASPCIRFNK----------EGILLAVSTND 663 (1015)
Q Consensus 617 ~~d-----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~i~~s~----------~~~~l~s~~~d 663 (1015)
+.+ ..+.+|++. +.+....+.. .+...+..+.+.+ +...+++++.|
T Consensus 295 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~d 373 (902)
T 2oaj_A 295 KSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPL-PTNVPIVNILPIPRQSPYFAGCHNPGLILLILGN 373 (902)
T ss_dssp ECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECC-SSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETT
T ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEEC-CCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCC
T ss_conf 877778885289995478987555425565466417452278741-8999547999977889886778785069999179
Q ss_pred CCEEEEECCCCCEEEEE------ECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 95999983687300121------0377654222321010026655544666666666-5554456332234578888777
Q 001776 664 NGIKILANADGIRLLRT------VESRTFDASRVASAAIVKAPAIGTFGSANANVGT-SLGERTAPAAAMVGMSNDSRNF 736 (1015)
Q Consensus 664 g~i~iw~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 736 (1015)
+.+++|++.++...... +..+...+..+. +............ .......+..............
T Consensus 374 g~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~---------~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~s 444 (902)
T 2oaj_A 374 GEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSM---------AASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPA 444 (902)
T ss_dssp SCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEE---------EEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCC
T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEE---------EEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 84899978999855655568985223589724899---------997499999888860469997545785778753336
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCC-CEEEECC---CCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCC
Q ss_conf 566654222233320111210125886-1357304---887687618999991797289980157589994456667888
Q 001776 737 TDVKPKIADEAVEKSRIWKLTEITEPS-QCRSLRL---PDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNS 812 (1015)
Q Consensus 737 ~~~~~l~~~~~d~~v~iw~~~~~~~~~-~~~~~~~---~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~ 812 (1015)
++++.+++++.|++|++||+....... ......+ ...+|...|.+++|+||+++|++++.||++++|++....+..
T Consensus 445 pdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~ 524 (902)
T 2oaj_A 445 EYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYS 524 (902)
T ss_dssp SEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC--
T ss_pred CCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECHHHCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCC
T ss_conf 66758999658983899978776456773677501541377888764699963899969999458579999924865557
Q ss_pred C------CC--E------ECCC--C-CEECC-----CCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEC-CCEEEEE
Q ss_conf 9------85--0------0014--8-51017-----999752014688999999803899735997999971-9919999
Q 001776 813 T------GK--A------TTNQ--A-PQLWQ-----PPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLF 869 (1015)
Q Consensus 813 ~------~~--~------~~~~--~-~~~~d-----~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~s-dg~i~iw 869 (1015)
. .. . .... . ..+.. ...+......+.+ |...|++++||||| +||+++ |++|++|
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~--h~~~V~svafSpdG-~lAsgs~D~tv~lw 601 (902)
T 2oaj_A 525 VENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHA--NKGKTSAINNSNIG-FVGIAYAAGSLMLI 601 (902)
T ss_dssp -------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECC--CSCSEEEEEECBTS-EEEEEETTSEEEEE
T ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC--CCCCEEEEEECCCC-EEEEEECCCCEEEE
T ss_conf 5455778665113455134679654322423689887776014699986--88867799964876-89999589769999
Q ss_pred ECCCCCEEE-----EEC-CCCCCEEEEEEC-----CCCC---CEEEEEECCCEEEEEEC---CCCEEEEEECCCC-----
Q ss_conf 677871468-----937-999991699973-----8999---58999974981999982---1362899971755-----
Q 001776 870 NMMTFKTMT-----TFM-PPPPAATFLAFH-----PQDN---NIIAIGMEDSSIQIYNV---RVDEVKTKLKGHQ----- 927 (1015)
Q Consensus 870 d~~~~~~~~-----~l~-~~~~~i~~i~~s-----p~d~---~~la~~~~dg~i~iwd~---~~~~~~~~l~~h~----- 927 (1015)
|+.+...+. .+. +|...|++++|+ | || ++|++|+.|++|++||+ .+|++...+.+|.
T Consensus 602 d~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~-Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~ 680 (902)
T 2oaj_A 602 DRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGD-DGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSK 680 (902)
T ss_dssp ETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTT-SSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSS
T ss_pred ECCCCEEEEEEEHHHHCCCCCCCEEEEEEEEEECCC-CCCCCEEEEEEECCCCEEEEEEECCCCCCEEEEECCCEECCCC
T ss_conf 888983999702467264666613999999984178-9876338999956873999999558998689996672440788
Q ss_pred CCEEEEE-EE----------------------CCCCEEEEEECCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCEEE-
Q ss_conf 7767999-92----------------------79999999818982999985676510115887259986566773599-
Q 001776 928 KRITGLA-FS----------------------NTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRV- 983 (1015)
Q Consensus 928 ~~v~~l~-~s----------------------pdg~~l~s~s~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~l- 983 (1015)
++|..+. |+ +++.+|+++ +..|++|++.++++. +..-++. -.+.++
T Consensus 681 ~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~-----~k~~~~~---~~~~~v~ 750 (902)
T 2oaj_A 681 GPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKST-----HKGFKYP---LAATGLS 750 (902)
T ss_dssp CCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEE-----EEECSSC---EEEEEEE
T ss_pred CCEEEEEEEECCCCCCCCCCHHHHHCCCCCCCCCEEEEEEE--CCCEEEEECCCCCCE-----EEECCCC---EEEEEEE
T ss_conf 96479985866879736688789725577887773999993--540599967533512-----3672562---0144777
Q ss_pred --E------ECCCCCEEEEE-ECCEEEEEECCCCEEECCC
Q ss_conf --9------85699899999-5880999985992274057
Q 001776 984 --Q------FHLDQTHLLAV-HETQIAIYEAPKLECLKQV 1014 (1015)
Q Consensus 984 --~------fs~dg~~l~~~-~d~~i~vwd~~~g~~l~~~ 1014 (1015)
. |++++..|++. .||.|++|++.+++++..+
T Consensus 751 ~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~ 790 (902)
T 2oaj_A 751 YISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSE 790 (902)
T ss_dssp EEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEEECCCCCCCCCCEEEEEEECCCCEEEEECCCHHHHHHC
T ss_conf 8870135554467369999927995999978564778416
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=467.13 Aligned_cols=532 Identities=14% Similarity=0.188 Sum_probs=415.6
Q ss_pred CCEEEEEECCCCCCCCCCCCCC------CCC----EEEEEEC-CCCC-EEEEEECC--CCCEEEEEEECCCEEEEEECCC
Q ss_conf 3401134379998875323789------894----1679840-6997-43788636--8981999994587199997599
Q 001776 323 VNILPVAYTPQSLGQSSYSTDD------LPK----TVVMTLN-QGSA-VKSMDFHP--VQQILLVVGTNMGDVMLWEVGS 388 (1015)
Q Consensus 323 ~~i~~~~~s~~g~~i~~~~~~~------~~~----~~~~~l~-h~~~-V~~i~~sp--~g~~lla~g~~dg~i~iwd~~~ 388 (1015)
..|.+++|+|+|+.++...... ... .....+. |... |++++|+| +++ ++++|+.||.|++||+.+
T Consensus 19 ~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~-~l~s~~~dg~v~vw~~~~ 97 (615)
T 1pgu_A 19 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ-YLCSGDESGKVIVWGWTF 97 (615)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCC-EEEEEETTSEEEEEEEEE
T ss_pred CCEEEEEECCCCCEEEEECCCEEEEEECCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCC-EEEEECCCCEEEEEECCC
T ss_conf 8536899889999799935984999977788776514318805788449999979678998-899964898799976888
Q ss_pred C------CEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECC----CEEEEEECCCCCEEEEEEE
Q ss_conf 6------23767533787516788554222356688887999982399989999879----8699998118930112358
Q 001776 389 R------ERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK----HIVHLYTYHGGDELRNHLE 458 (1015)
Q Consensus 389 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~~d----g~i~iwd~~~~~~~~~~~~ 458 (1015)
+ ...... .+..|...|.+++|+|++++|++++.+ +.|.+|+ .++.+. .
T Consensus 98 ~~~~~~~~~~~~~-----------------~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~---~ 155 (615)
T 1pgu_A 98 DKESNSVEVNVKS-----------------EFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLG---E 155 (615)
T ss_dssp EGGGTEEEEEEEE-----------------EEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEE---E
T ss_pred CCCCCCCCCCCCC-----------------HHHCCCCCEEEEEEECCCCEEEEECCCCCCCCEEEEEE--CCCCCE---E
T ss_conf 7655445542000-----------------11125663799999079998999316877755799997--898103---1
Q ss_pred EECCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEECCCC---CEEEEEECCCCCCCEEEEEECCCEEEE
Q ss_conf 82234765499994499935999993899199998689946799507889---979983013699649999827992999
Q 001776 459 IEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES---PVYSICPHHKENIQFIFSTATDGKIKA 535 (1015)
Q Consensus 459 l~~h~~~v~~i~~s~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~---~v~~i~~~~~~~~~~l~s~~~dg~i~i 535 (1015)
+.+|...|.+++|+|+++. .+++++.|+.|++||+.+++.+..+.+|.. .|.+++|+++. ++++++++.|+.|++
T Consensus 156 ~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~v 233 (615)
T 1pgu_A 156 VSGHSQRINACHLKQSRPM-RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS-GEFVITVGSDRKISC 233 (615)
T ss_dssp CCSCSSCEEEEEECSSSSC-EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTT-CCEEEEEETTCCEEE
T ss_pred EECCCCCEEEEEECCCCCC-EEEEEECCCCEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCC-CCEEEEEECCCEEEE
T ss_conf 3067743889998878996-89999579959999699961013202567777428999978977-888999868980899
Q ss_pred EECCCCCCEEEE-C---CCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEEECCC---CCCEEEEEEEC
Q ss_conf 967899831331-4---9999638999978999999985178998369999689870347850789---87848999927
Q 001776 536 WLYDNLGSRVDY-D---APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG---KRSVGVVQFDT 608 (1015)
Q Consensus 536 wd~~~~~~~~~~-~---~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~---~~~i~~i~~~~ 608 (1015)
||+.+......+ . .+...+.+++|+ ++.++++++.++ .+++||+.+++....+..+. ...+..+.+.
T Consensus 234 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~- 307 (615)
T 1pgu_A 234 FDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADA----TIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT- 307 (615)
T ss_dssp EETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTS----EEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-
T ss_pred EECCCCCEEEEECCCCCCCCCCEEEEEEC-CCCEEEEECCCC----CEEEEECCCCCEEEEECCCCCCCCCCEEEEEEC-
T ss_conf 98999978589525444567755899981-899799984899----489997888927878847877545714699918-
Q ss_pred CCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCC
Q ss_conf 99999999589829999689982369982589999854389728999999996799599998368730012103776542
Q 001776 609 TKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDA 688 (1015)
Q Consensus 609 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 688 (1015)
++..+++++.|+.|++||+.+++.+..+..| ...|.+++| |+ +++++.||.|++|+.. .+. ..|...+
T Consensus 308 ~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~--~~~v~~~~~-~~---l~~~~~dg~i~~w~~~----~~~--~~~~~~v 375 (615)
T 1pgu_A 308 GNGRIISLSLDGTLNFYELGHDEVLKTISGH--NKGITALTV-NP---LISGSYDGRIMEWSSS----SMH--QDHSNLI 375 (615)
T ss_dssp ETTEEEEEETTSCEEEEETTEEEEEEEECCC--SSCEEEEET-TT---TEEEETTSCEEETTTT----EEE--CCCCSCE
T ss_pred CCCEEEEEECCCCEEEEECCCCCEEEEEECC--CCCEEEEEE-CC---CEEECCCCEEEEEECH----HHC--CCCCCCE
T ss_conf 9976999978997899988899288999477--787899995-67---4898799959998752----415--7556851
Q ss_pred CCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEE
Q ss_conf 22321010026655544666666666555445633223457888877756665422223332011121012588613573
Q 001776 689 SRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSL 768 (1015)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~ 768 (1015)
..+ .+ +++..+++++.|+.+++|++.......
T Consensus 376 ~~~------------------------------------~~-------~~~~~l~~~~~d~~i~~~~~~~~~~~~----- 407 (615)
T 1pgu_A 376 VSL------------------------------------DN-------SKAQEYSSISWDDTLKVNGITKHEFGS----- 407 (615)
T ss_dssp EEE------------------------------------EC-------CSTTCCEEEETTTEEEETTEEEEECSS-----
T ss_pred EEE------------------------------------EE-------CCCCEEEEEECCCCEEEEECCCCCCCC-----
T ss_conf 799------------------------------------97-------898679999589979998866676367-----
Q ss_pred CCCCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCC----CC---------CCE----EC-CCCCEECCCCCC
Q ss_conf 0488768761899999179728998015758999445666788----89---------850----00-148510179997
Q 001776 769 RLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERN----ST---------GKA----TT-NQAPQLWQPPSG 830 (1015)
Q Consensus 769 ~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~iw~~~~~~~~----~~---------~~~----~~-~~~~~~~d~~~~ 830 (1015)
.+..++++|++..++++ .++.+.+|+....... .. +.. .. ...+.+|+..++
T Consensus 408 ---------~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~ 477 (615)
T 1pgu_A 408 ---------QPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDL 477 (615)
T ss_dssp ---------CEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEE
T ss_pred ---------CCEEEEECCCCCEEEEE-CCCCEEEEECCCCCEEEECCCCCCCEEEEECCCEEEEEECCCCEEEEEECCCC
T ss_conf ---------84699982898789996-79826999446786655515678720778838889996568986999988885
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCEEEEEC-CCEEEEEECCCCCEEEEECC-CCCCEEEEEECCC---------CCCE
Q ss_conf 52014688999999803899735997999971-99199996778714689379-9999169997389---------9958
Q 001776 831 ILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMP-PPPAATFLAFHPQ---------DNNI 899 (1015)
Q Consensus 831 ~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~l~~-~~~~i~~i~~sp~---------d~~~ 899 (1015)
......+.+ |...|.+++|+|++++|++++ |+.|++|++.+++.+..+.+ |...|++++|+|. ++++
T Consensus 478 ~~~~~~~~~--~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~ 555 (615)
T 1pgu_A 478 EVSFDLKTP--LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDL 555 (615)
T ss_dssp EEEEECSSC--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCE
T ss_pred CCCCCCCCC--CCCCEEEEEECCCCCEEEECCCCCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCE
T ss_conf 435333677--657507999989999899817998599865777762467604788714699976832345332468888
Q ss_pred EEEEECCCEEEEEECCCC-EEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCC
Q ss_conf 999974981999982136-28999717557767999927999999981898299998567
Q 001776 900 IAIGMEDSSIQIYNVRVD-EVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDG 958 (1015)
Q Consensus 900 la~~~~dg~i~iwd~~~~-~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iWd~~~ 958 (1015)
|++++.|+.|++|++.++ +++..+.+|.+.|++++|+|++. |++++.|+.|++|++..
T Consensus 556 l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 556 VATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred EEEECCCCCEEEEECCCCCEECHHHHCCCCCEEEEEECCCCC-EEEECCCCEEEEEEEEC
T ss_conf 999817971999977888540311335943058999738997-28845996399996015
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=456.63 Aligned_cols=584 Identities=12% Similarity=0.074 Sum_probs=420.6
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCC-------CCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEE
Q ss_conf 234011343799988753237898-------9416798406997437886368981999994587199997599623767
Q 001776 322 SVNILPVAYTPQSLGQSSYSTDDL-------PKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAV 394 (1015)
Q Consensus 322 ~~~i~~~~~s~~g~~i~~~~~~~~-------~~~~~~~l~h~~~V~~i~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~ 394 (1015)
...|.|++|+|++..+++.+.|.. .......+.|...|++++|+| ++ ++++++.|++|++||+.+++.+..
T Consensus 17 ~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~-~L~S~s~D~~v~lWd~~~~~~~~~ 94 (902)
T 2oaj_A 17 SSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GI-YLVVINAKDTVYVLSLYSQKVLTT 94 (902)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TT-EEEEEETTCEEEEEETTTCSEEEE
T ss_pred CCCCEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCCEEEEEECC-CC-EEEEEECCCEEEEEECCCCCEEEE
T ss_conf 9984899997999989999297989999689947999868999779999908-98-899998959599998999968999
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE--------EEEECCCCCE
Q ss_conf 53378751678855422235668888799998239998999987986999981189301123--------5882234765
Q 001776 395 KSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNH--------LEIEAHVGSV 466 (1015)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~--------~~l~~h~~~v 466 (1015)
+ .|...|++++|+|++++|++|+.||.|++||+.++...... ..+.+|.+.|
T Consensus 95 -------------------~-~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V 154 (902)
T 2oaj_A 95 -------------------V-FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPI 154 (902)
T ss_dssp -------------------E-ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCC
T ss_pred -------------------E-CCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCEECCCCCCCCCCCCCCCCE
T ss_conf -------------------7-48998799998799998999949992999999999626503043210002544578973
Q ss_pred EEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEECC------------------CCCEEEEEECCCCCCCEEEEEE
Q ss_conf 4999944999359999938991999986899467995078------------------8997998301369964999982
Q 001776 467 NDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH------------------ESPVYSICPHHKENIQFIFSTA 528 (1015)
Q Consensus 467 ~~i~~s~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h------------------~~~v~~i~~~~~~~~~~l~s~~ 528 (1015)
++++|+|++.. .+++|+.|+.| +||+++++.+..+..| ...|.+++|+++ +.++++++
T Consensus 155 ~sl~~sp~~~~-~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspd--g~~lasgs 230 (902)
T 2oaj_A 155 VSIQWNPRDIG-TVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN--SLHIITIH 230 (902)
T ss_dssp CEEEEETTEEE-EEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTT--SSEEEEEE
T ss_pred EEEEECCCCCC-EEEEEECCCCE-EEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC--CCEEEEEE
T ss_conf 89997669999-89999189849-9987789657998335577677765443323456777689998599--99999998
Q ss_pred CCCEEEEEECCCCCCEEE--E---CC-------------CCCCEEEEEEC----CCC-CEEEEEEECCC-CCCEEEEEEC
Q ss_conf 799299996789983133--1---49-------------99963899997----899-99999851789-9836999968
Q 001776 529 TDGKIKAWLYDNLGSRVD--Y---DA-------------PGHSSTMMAYS----ADG-ARLFSCGTNKE-GESYLVEWNE 584 (1015)
Q Consensus 529 ~dg~i~iwd~~~~~~~~~--~---~~-------------~~~~i~~~~~s----~~~-~~l~~~~~d~~-~~~~i~iwd~ 584 (1015)
.|+.|++||+++++.... + .. +...|.+++|+ |++ ..+++++.+.. ....+.+|+.
T Consensus 231 ~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 231 EDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL 310 (902)
T ss_dssp TTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred CCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEEEC
T ss_conf 99939999878996888885012345787776788885556774579997349998878999688777788852899954
Q ss_pred C------------------CCEEEEEEECCCCCCEEEEEEEC----------CCCEEEEEECCCCEEEEECCCCCEEEE-
Q ss_conf 9------------------87034785078987848999927----------999999995898299996899823699-
Q 001776 585 S------------------EGAVKRTYHGLGKRSVGVVQFDT----------TKNRFLAAGDEFMIKFWDMDNVNLLAS- 635 (1015)
Q Consensus 585 ~------------------~~~~~~~~~~~~~~~i~~i~~~~----------~~~~l~~~~~dg~i~iwd~~~~~~~~~- 635 (1015)
. .++....+.......+..+.+.+ +...+++++.|+.|++|++.++.....
T Consensus 311 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~ 390 (902)
T 2oaj_A 311 GYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKA 390 (902)
T ss_dssp EECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCG
T ss_pred CCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCC
T ss_conf 78987555425565466417452278741899954799997788988677878506999917984899978999855655
Q ss_pred ------------------E--------------------ECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEECCCCCEE
Q ss_conf ------------------8--------------------25899998543897289999999967995999983687300
Q 001776 636 ------------------I--------------------DADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRL 677 (1015)
Q Consensus 636 ------------------~--------------------~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 677 (1015)
+ ...++...+..++|+|+++++++++.|++|++||+.++. .
T Consensus 391 ~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~-~ 469 (902)
T 2oaj_A 391 SLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGD-I 469 (902)
T ss_dssp GGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCT-T
T ss_pred CCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCC-C
T ss_conf 568985223589724899997499999888860469997545785778753336667589996589838999787764-5
Q ss_pred EE--EEC---------CCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12--103---------7765422232101002665554466666666655544563322345788887775666542222
Q 001776 678 LR--TVE---------SRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADE 746 (1015)
Q Consensus 678 ~~--~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 746 (1015)
.. .+. +|...+ ..++|+ ++++.+++++
T Consensus 470 ~~~~~~~~~l~~~~~~~h~~~V------------------------------------~svafs------pdg~~LAsgs 507 (902)
T 2oaj_A 470 QDNASFEVNLSRTLNKAKELAV------------------------------------DKISFA------AETLELAVSI 507 (902)
T ss_dssp TTTBCEEEEHHHHTTCSSSCCE------------------------------------EEEEEE------TTTTEEEEEE
T ss_pred CCCCEEEEECHHHCCCCCCCCE------------------------------------EEEEEC------CCCCEEEEEE
T ss_conf 6773677501541377888764------------------------------------699963------8999699994
Q ss_pred CCCCEEEEEECCCCCCCC---------------------------------------EEEECCCCCCCCCCEEEEEECCC
Q ss_conf 333201112101258861---------------------------------------35730488768761899999179
Q 001776 747 AVEKSRIWKLTEITEPSQ---------------------------------------CRSLRLPDNLTAMRVSRLIYTNS 787 (1015)
Q Consensus 747 ~d~~v~iw~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~i~~l~~s~d 787 (1015)
.|++|++|++........ +..+ ....+|...|.+++|+||
T Consensus 508 ~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~l~~h~~~V~svafSpd 586 (902)
T 2oaj_A 508 ETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPS-TAVHANKGKTSAINNSNI 586 (902)
T ss_dssp TTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEE-EEECCCSCSEEEEEECBT
T ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEE-EEEECCCCCEEEEEECCC
T ss_conf 5857999992486555754557786651134551346796543224236898877760146-999868886779996487
Q ss_pred CCEEEEECCCCEEEEEECCCCCCCCCCCEECCCCCEECCCCCCCCCCCCCC-CCCCCCCCCEEEEC-----CCC---CEE
Q ss_conf 728998015758999445666788898500014851017999752014688-99999980389973-----599---799
Q 001776 788 GLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDIS-DTNPEDAVPCFALS-----KND---SYV 858 (1015)
Q Consensus 788 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~-~~~~~~~v~~l~~s-----~dg---~~l 858 (1015)
| +|++++.|+.|++|++..... . +. +.+ ..+. + |...|++++|+ ||| ++|
T Consensus 587 G-~lAsgs~D~tv~lwd~~~~~~------~-------~~---~~~--~~~~~g--h~~~V~sv~Fs~~~~~~Dg~~~~~l 645 (902)
T 2oaj_A 587 G-FVGIAYAAGSLMLIDRRGPAI------I-------YM---ENI--REISGA--QSACVTCIEFVIMEYGDDGYSSILM 645 (902)
T ss_dssp S-EEEEEETTSEEEEEETTTTEE------E-------EE---EEG--GGTCSS--CCCCEEEEEEEEEECTTSSSEEEEE
T ss_pred C-EEEEEECCCCEEEEECCCCEE------E-------EE---EEH--HHHCCC--CCCCEEEEEEEEEECCCCCCCCEEE
T ss_conf 6-899995897699998889839------9-------97---024--672646--6661399999998417898763389
Q ss_pred EEEC-CCEEEEEEC---CCCCEEEEECCC-----CCCEEEEE-EC----------------------CCCCCEEEEEECC
Q ss_conf 9971-991999967---787146893799-----99916999-73----------------------8999589999749
Q 001776 859 MSAS-GGKISLFNM---MTFKTMTTFMPP-----PPAATFLA-FH----------------------PQDNNIIAIGMED 906 (1015)
Q Consensus 859 a~~s-dg~i~iwd~---~~~~~~~~l~~~-----~~~i~~i~-~s----------------------p~d~~~la~~~~d 906 (1015)
++++ |++|++|++ .+++....+.+| ..+|..++ |+ + ++.+|+++ +
T Consensus 646 ~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~-~~~~l~~~--~ 722 (902)
T 2oaj_A 646 VCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCI-PGIVLITG--F 722 (902)
T ss_dssp EEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCC-CEEEEEEC--S
T ss_pred EEEECCCCEEEEEEECCCCCCEEEEECCCEECCCCCCEEEEEEEECCCCCCCCCCHHHHHCCCCCCCC-CEEEEEEE--C
T ss_conf 99956873999999558998689996672440788964799858668797366887897255778877-73999993--5
Q ss_pred CEEEEEECCCCEEEEEECCCCCCEEEE---E------EECCCCEEEEEECCCCEEEEECCCCCCCCCEEEEECCCCCCCC
Q ss_conf 819999821362899971755776799---9------9279999999818982999985676510115887259986566
Q 001776 907 SSIQIYNVRVDEVKTKLKGHQKRITGL---A------FSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASA 977 (1015)
Q Consensus 907 g~i~iwd~~~~~~~~~l~~h~~~v~~l---~------~spdg~~l~s~s~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~ 977 (1015)
..|++|++.++++.+....|...+..+ . +++++..|++++.||+|++|++.++++.... ..+.... .
T Consensus 723 ~~ir~~~~~~~k~~~k~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~--~~~~~~~--~ 798 (902)
T 2oaj_A 723 DDIRLITLGKSKSTHKGFKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSE--HIPFPIA--A 798 (902)
T ss_dssp SEEEEECTTCCCEEEEECSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEE--ECSSCCC--H
T ss_pred CCEEEEECCCCCCEEEECCCCEEEEEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEECCCHHHHHHC--CCCCCCC--C
T ss_conf 40599967533512367256201447778870135554467369999927995999978564778416--5886024--4
Q ss_pred CCCEEEEECCCCCEEEEEECCE---EEEE
Q ss_conf 7735999856998999995880---9999
Q 001776 978 LADTRVQFHLDQTHLLAVHETQ---IAIY 1003 (1015)
Q Consensus 978 ~~v~~l~fs~dg~~l~~~~d~~---i~vw 1003 (1015)
..+....|+.+|..++-.+... +.+|
T Consensus 799 ~~~~~~~~~~~G~~~~~~~~~e~~~~~~~ 827 (902)
T 2oaj_A 799 KYITESSVLRNGDIAIRVSEFQASLFSTV 827 (902)
T ss_dssp HHHTTCEECTTSCEEEECSSSEEEEEEEE
T ss_pred CCCCCEEECCCCCEEEEECHHHEEEEEEE
T ss_conf 64320289689889998270264899997
Done!