Query 001778
Match_columns 1014
No_of_seqs 701 out of 6482
Neff 9.6
Searched_HMMs 29240
Date Tue Mar 26 16:39:11 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001778.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1074-1078//hhsearch_pdb/001778hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 665.4 36.9 588 23-614 3-746 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 540.3 31.7 517 71-588 100-743 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 499.7 37.5 550 61-613 4-627 (680)
4 3t6q_A CD180 antigen; protein- 1.0 1 1 483.6 34.5 522 63-592 14-566 (606)
5 3j0a_A TOLL-like receptor 5; m 1.0 1 1 482.5 38.5 518 59-591 12-565 (844)
6 1ziw_A TOLL-like receptor 3; i 1.0 1 1 474.6 38.0 518 71-590 49-626 (680)
7 3j0a_A TOLL-like receptor 5; m 1.0 1 1 473.9 36.7 523 76-612 9-564 (844)
8 4ecn_A Leucine-rich repeat pro 1.0 1 1 469.7 24.9 515 29-584 266-862 (876)
9 4eco_A Uncharacterized protein 1.0 1 1 468.5 22.2 496 30-563 28-600 (636)
10 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 466.6 29.2 509 71-592 32-564 (606)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=665.37 Aligned_cols=588 Identities=34% Similarity=0.497 Sum_probs=449.1
Q ss_pred HHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEECCCCCCCC---CC-----------
Q ss_conf 4202489977999999999845899999998899999999993683999644883105467755---89-----------
Q 001778 23 GRANSQLYDREHAVLLKLKQHWQNPPPISHWATTNSSHCTWPEIACTDGSVTELHLTNMNMNGT---FP----------- 88 (1014)
Q Consensus 23 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~w~~~~~~~c~w~gv~c~~~~v~~L~l~~~~l~~~---~~----------- 88 (1014)
+++++++.+.|+.||++||+++.++..+++|.. ++|||.|.||+|+.++|+.|+|+++++.|. ++
T Consensus 3 ~~~~~~~~~~~~~all~~k~~~~~~~~l~~W~~-~~~~C~w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~ 81 (768)
T 3rgz_A 3 QASPSQSLYREIHQLISFKDVLPDKNLLPDWSS-NKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLES 81 (768)
T ss_dssp -----CCHHHHHHHHHHHHTTCSCTTSSTTCCT-TSCGGGSTTEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCE
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCCCCEEECCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCCC
T ss_conf 676566878999999999966789621468789-9987688413878992789877899867755766965731680224
Q ss_pred ------------CCCCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCCEECCCCCCCCCCCCCCC-CCCCCCCEEEECCC
Q ss_conf ------------7788999852998746977999871--22277876361244533589999210-03465556550176
Q 001778 89 ------------PFICDLRNLTILDLQFNYIISQFPR--VLYNCSKLEYLDLSQNYFIGPIPEDI-DRLSRLKFLYLTAN 153 (1014)
Q Consensus 89 ------------~~l~~l~~L~~L~L~~n~i~~~~p~--~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n 153 (1014)
+.++++++|++|+|++|.+++.+|. .++.+++|++|+|++|.+.+..|..+ ..+++|++|++++|
T Consensus 82 l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n 161 (768)
T 3rgz_A 82 LFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161 (768)
T ss_dssp EECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSS
T ss_pred CCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCC
T ss_conf 67868886787033245788998989898578707896787278899989896882677479778563889998989798
Q ss_pred CCCCCCCHH---HCCCC----------------------CCCEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCC
Q ss_conf 678988421---20567----------------------66657403433479876113675300235201356889999
Q 001778 154 NMSGKIPAS---IGRLT----------------------ELRQLNLVVNQFNGSIPAEIGNLQNLEALELAYNTEFSPSS 208 (1014)
Q Consensus 154 ~l~~~~p~~---l~~l~----------------------~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~ 208 (1014)
.+++..|.. +.+++ +|++|++++|.+.+.+|. ++++++|++|++++|++. +.
T Consensus 162 ~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~--~~ 238 (768)
T 3rgz_A 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS--GD 238 (768)
T ss_dssp CCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCC--SC
T ss_pred CCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCC--CC
T ss_conf 358858715566435898898989788034657845478689898928827887711-126999998979488587--81
Q ss_pred CCCCCCCCCC----------------------CCEEECCCCCCCCCCCCCCCCC-CCCCEEECCCCCCCCCCCHHHHCCC
Q ss_conf 9910001233----------------------3300033666657542111366-4555344025644686890010799
Q 001778 209 LPSNFTQLKK----------------------LKKLWMASTNLIGEIPETIGDM-LALEFLDLSINNFTGSIPSSVFKLK 265 (1014)
Q Consensus 209 lp~~~~~l~~----------------------L~~L~l~~n~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~l~ 265 (1014)
.|..+..+++ |++|++++|.+.+.+|..+... ++|++|++++|.+++.+|..+..++
T Consensus 239 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~ 318 (768)
T 3rgz_A 239 FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318 (768)
T ss_dssp HHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCT
T ss_pred CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCC
T ss_conf 65777448888989898886657167243687898979178557725888884468688998968967784236775587
Q ss_pred CCCEEECCCCCCCCCCCCC-CCCC-CCCEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCEECCCCCCCCCC--CCCCCC
Q ss_conf 9867983589888888920-0136-535544236646788997643422-2342002143201468864689--889972
Q 001778 266 NLSKVYLYSNSLSGEIPQA-VESL-NLKVIDLSANNLTGAIPNDFGKLE-NLLNLSLMFNQLSGEIPEGIGL--LPSLKD 340 (1014)
Q Consensus 266 ~L~~L~L~~N~l~~~~~~~-~~~~-~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~--l~~L~~ 340 (1014)
+|+.|++++|.+.+..|.. +... +|++|++++|.+++.+|..+..++ +|+.|++++|++.+.+|..+.. +++|+.
T Consensus 319 ~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~ 398 (768)
T 3rgz_A 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398 (768)
T ss_dssp TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCE
T ss_pred CCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCE
T ss_conf 76677897885257379788724888878848478437623098986322771998627874787676665332477618
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCEE
Q ss_conf 02448733224986553899993565126645667882322189744797146656799995522478662899636644
Q 001778 341 VRLFNNMLSGALPPDFGRYSPLEYFEVSVNNLTGSLPEHLCAGGKLAGIAAQDNNLSGELPESLGNCSSLLMVKIYNNSF 420 (1014)
Q Consensus 341 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l 420 (1014)
|++++|.+++..|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++
T Consensus 399 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l 478 (768)
T 3rgz_A 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478 (768)
T ss_dssp EECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred EECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCC
T ss_conf 98977846542487775689879898958846685467774499889898978815471897882877732999019951
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 067776544554445001347855678898677--887631144561237678765688752699945871254224433
Q 001778 421 TGNIPAGLWTGFNLSMVLISDNLFTGELPDKMS--GNLSRLEISNNRFSGKIPTGVSSSKNLVVFQASNNLFNGTIPGEL 498 (1014)
Q Consensus 421 ~~~~p~~~~~~~~l~~l~l~~n~~~~~~p~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~ 498 (1014)
.+.+|..+....+|+.+++++|.+++.+|..+. ++|+.|++++|++.+.+|..+.++++|+.|++++|.+.+.+|.++
T Consensus 479 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred CCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHH
T ss_conf 37588788169989989753995189687688568999989897894337488777088989989898884688279578
Q ss_pred ----------------------------------------------------------------------CCCCCCCEEC
Q ss_conf ----------------------------------------------------------------------3644454431
Q 001778 499 ----------------------------------------------------------------------TALPSLTTLL 508 (1014)
Q Consensus 499 ----------------------------------------------------------------------~~l~~L~~L~ 508 (1014)
..+++|+.||
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~Ld 638 (768)
T 3rgz_A 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638 (768)
T ss_dssp GTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEE
T ss_pred HCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEE
T ss_conf 60421223201345421111344432222332221001355632320023211001133100462743340335665797
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHH-CCCCCCCCCCCCCC
Q ss_conf 54443478886441231122300034661422369665666643311048883656791245430-02201257883436
Q 001778 509 LDQNQLSGSLPLDIISWKSLTALNLSRNQLSGEIPEKIGFLPVLQDLDLSENQFSGKIPPQIGRL-MLTSLNLSSNRLTG 587 (1014)
Q Consensus 509 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~-~l~~l~l~~N~l~~ 587 (1014)
|++|+++|.+|.++..++.|+.|+|++|+++|.+|..++.++.|+.|||++|+++|.+|..++.+ .|+.|++++|+++|
T Consensus 639 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp CCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred CCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCC
T ss_conf 85880155587788414157878486880388789678477789989897880238688677578878978796881556
Q ss_pred CCCHHHH-HHCCCCCCCCCCCCCCCCCC
Q ss_conf 6890444-20123444479888788888
Q 001778 588 EIPSQFE-NRAYASSFLNNPGLCASSSN 614 (1014)
Q Consensus 588 ~~p~~~~-~~~~~~~~~~n~~~c~~~~~ 614 (1014)
.||...+ ..+...+|.|||++||.|..
T Consensus 719 ~iP~~~~~~~~~~~~~~gN~~Lcg~~l~ 746 (768)
T 3rgz_A 719 PIPEMGQFETFPPAKFLNNPGLCGYPLP 746 (768)
T ss_dssp ECCSSSSGGGSCGGGGCSCTEEESTTSC
T ss_pred CCCCCHHHCCCCHHHHCCCCHHCCCCCC
T ss_conf 0899601024897775698321088776
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=540.34 Aligned_cols=517 Identities=30% Similarity=0.483 Sum_probs=401.1
Q ss_pred CCEEEEEECCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCCEECCCCCCCCCCCCCC---------
Q ss_conf 9644883105467755897--78899985299874697799987122-27787636124453358999921---------
Q 001778 71 GSVTELHLTNMNMNGTFPP--FICDLRNLTILDLQFNYIISQFPRVL-YNCSKLEYLDLSQNYFIGPIPED--------- 138 (1014)
Q Consensus 71 ~~v~~L~l~~~~l~~~~~~--~l~~l~~L~~L~L~~n~i~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~--------- 138 (1014)
.+++.|+|+++.+.+.+|. .++++++|++|+|++|.+.+..|..+ ..+++|++|++++|.+++..|..
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~ 179 (768)
T 3rgz_A 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179 (768)
T ss_dssp TTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTT
T ss_pred CCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCC
T ss_conf 88998989898578707896787278899989896882677479778563889998989798358858715566435898
Q ss_pred ----------------CCCCCCCCEEEECCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCC
Q ss_conf ----------------0034655565501766789884212056766657403433479876113675300235201356
Q 001778 139 ----------------IDRLSRLKFLYLTANNMSGKIPASIGRLTELRQLNLVVNQFNGSIPAEIGNLQNLEALELAYNT 202 (1014)
Q Consensus 139 ----------------l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 202 (1014)
+..+++|++|++++|.+++.+|. ++.+++|++|++++|.+++.+|..++++++|++|++++|+
T Consensus 180 L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 258 (768)
T 3rgz_A 180 LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258 (768)
T ss_dssp CCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSC
T ss_pred CCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCC
T ss_conf 898989788034657845478689898928827887711-1269999989794885878165777448888989898886
Q ss_pred CCC-------------------C-CCCCCCCCCC-CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHH-
Q ss_conf 889-------------------9-9999100012-33330003366665754211136645553440256446868900-
Q 001778 203 EFS-------------------P-SSLPSNFTQL-KKLKKLWMASTNLIGEIPETIGDMLALEFLDLSINNFTGSIPSS- 260 (1014)
Q Consensus 203 ~~~-------------------~-~~lp~~~~~l-~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~- 260 (1014)
+.. + +.+|..+..+ ++|++|++++|.+.+.+|..++.+++|++|++++|.+++.+|..
T Consensus 259 l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~ 338 (768)
T 3rgz_A 259 FVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT 338 (768)
T ss_dssp CEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHH
T ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHH
T ss_conf 65716724368789897917855772588888446868899896896778423677558776677897885257379788
Q ss_pred HHCCCCCCEEECCCCCCCCCCCCCCCC-C-CCCEEECCCCCCCCCCCCCCCC--CCCCCCCCCCCCEECCCCCCCCCCCC
Q ss_conf 107999867983589888888920013-6-5355442366467889976434--22234200214320146886468988
Q 001778 261 VFKLKNLSKVYLYSNSLSGEIPQAVES-L-NLKVIDLSANNLTGAIPNDFGK--LENLLNLSLMFNQLSGEIPEGIGLLP 336 (1014)
Q Consensus 261 ~~~l~~L~~L~L~~N~l~~~~~~~~~~-~-~L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~p~~~~~l~ 336 (1014)
+..+++|+.|++++|++.+..|..+.. . +|+.|++++|.+++.++..+.. +++|+.|++++|.+.+.+|..++.++
T Consensus 339 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~ 418 (768)
T 3rgz_A 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418 (768)
T ss_dssp HTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT
T ss_pred HHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCC
T ss_conf 72488887884847843762309898632277199862787478767666533247761898977846542487775689
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 99720244873322498655389999356512664566788232218974479714665679999552247866289963
Q 001778 337 SLKDVRLFNNMLSGALPPDFGRYSPLEYFEVSVNNLTGSLPEHLCAGGKLAGIAAQDNNLSGELPESLGNCSSLLMVKIY 416 (1014)
Q Consensus 337 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 416 (1014)
+|+.|++++|.+++..|..++.+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+.++++|+.|+++
T Consensus 419 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 498 (768)
T 3rgz_A 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498 (768)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECC
T ss_conf 87989895884668546777449988989897881547189788287773299901995137588788169989989753
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCEECCCCCCCCCCCCC----------------------
Q ss_conf 6644067776544554445001347855678898677--8876311445612376787----------------------
Q 001778 417 NNSFTGNIPAGLWTGFNLSMVLISDNLFTGELPDKMS--GNLSRLEISNNRFSGKIPT---------------------- 472 (1014)
Q Consensus 417 ~N~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~p~~~~--~~L~~L~Ls~N~l~~~~~~---------------------- 472 (1014)
+|++.+.+|.++..+.+|+.+++++|.+.+.+|..+. ++|+.|++++|++.+.+|.
T Consensus 499 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~ 578 (768)
T 3rgz_A 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 578 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEE
T ss_pred CCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCC
T ss_conf 99518968768856899998989789433748877708898998989888468827957860421223201345421111
Q ss_pred ------------------------------------------------CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf ------------------------------------------------65688752699945871254224433364445
Q 001778 473 ------------------------------------------------GVSSSKNLVVFQASNNLFNGTIPGELTALPSL 504 (1014)
Q Consensus 473 ------------------------------------------------~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L 504 (1014)
.+.++++|+.|++++|.+.+.+|.+|+.+++|
T Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L 658 (768)
T 3rgz_A 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL 658 (768)
T ss_dssp ECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCC
T ss_conf 34443222233222100135563232002321100113310046274334033566579785880155587788414157
Q ss_pred CEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCCCCC
Q ss_conf 44315444347888644123112230003466142236966566664331104888365679124543002201257883
Q 001778 505 TTLLLDQNQLSGSLPLDIISWKSLTALNLSRNQLSGEIPEKIGFLPVLQDLDLSENQFSGKIPPQIGRLMLTSLNLSSNR 584 (1014)
Q Consensus 505 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~l~l~~N~ 584 (1014)
+.|+|++|.++|.+|..+..++.|+.|||++|+++|.+|..+..++.|+.||+++|+++|.||..-.-..+....+.+|+
T Consensus 659 ~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~ 738 (768)
T 3rgz_A 659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNP 738 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCT
T ss_pred CEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCHHHCCCCHHHHCCCC
T ss_conf 87848688038878967847778998989788023868867757887897879688155608996010248977756983
Q ss_pred -CCCC
Q ss_conf -4366
Q 001778 585 -LTGE 588 (1014)
Q Consensus 585 -l~~~ 588 (1014)
++|.
T Consensus 739 ~Lcg~ 743 (768)
T 3rgz_A 739 GLCGY 743 (768)
T ss_dssp EEEST
T ss_pred HHCCC
T ss_conf 21088
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=499.67 Aligned_cols=550 Identities=21% Similarity=0.187 Sum_probs=443.9
Q ss_pred CCCCCEEECC-----------CCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 9999368399-----------96448831054677558977889998529987469779998712227787636124453
Q 001778 61 CTWPEIACTD-----------GSVTELHLTNMNMNGTFPPFICDLRNLTILDLQFNYIISQFPRVLYNCSKLEYLDLSQN 129 (1014)
Q Consensus 61 c~w~gv~c~~-----------~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n 129 (1014)
|.+..|.|+. .+++.|+++++++++..+..|.++++|++|+|++|.+++..|..|+++++|++|+|++|
T Consensus 4 ~~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 4 VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp CBSSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred EECCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCC
T ss_conf 67874487779805264124888768889899778759788717876758878899648569778740667688889998
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCC
Q ss_conf 35899992100346555655017667898842120567666574034334798761136753002352013568899999
Q 001778 130 YFIGPIPEDIDRLSRLKFLYLTANNMSGKIPASIGRLTELRQLNLVVNQFNGSIPAEIGNLQNLEALELAYNTEFSPSSL 209 (1014)
Q Consensus 130 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~l 209 (1014)
.+++..+..|+++++|++|++++|.+++..|..|+++++|++|++++|.+++..+..++++++|++|++++|++ ..+
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l---~~~ 160 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI---QAL 160 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC---CCB
T ss_pred CCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCC---CCC
T ss_conf 56756854530388889898989966853966741567888898989952466721112455677797458843---652
Q ss_pred CC-CC--CCCCCCCEEECCCCCCCCCCCCCCCCCC---------------------------CCCEEECCCCCCCCCCCH
Q ss_conf 91-00--0123333000336666575421113664---------------------------555344025644686890
Q 001778 210 PS-NF--TQLKKLKKLWMASTNLIGEIPETIGDML---------------------------ALEFLDLSINNFTGSIPS 259 (1014)
Q Consensus 210 p~-~~--~~l~~L~~L~l~~n~l~~~~p~~~~~l~---------------------------~L~~L~L~~N~l~~~~p~ 259 (1014)
+. .+ ..+++|+.|++++|.+.+..|..+..+. +|+.|++++|.+++..|.
T Consensus 161 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~ 240 (680)
T 1ziw_A 161 KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240 (680)
T ss_dssp CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT
T ss_pred CHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHH
T ss_conf 97886244666321798889825655815553223445543056646805677787775315100887457743646866
Q ss_pred HHHCCCC--CCEEECCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC-----CCC--
Q ss_conf 0107999--8679835898888889200136-53554423664678899764342223420021432014-----688--
Q 001778 260 SVFKLKN--LSKVYLYSNSLSGEIPQAVESL-NLKVIDLSANNLTGAIPNDFGKLENLLNLSLMFNQLSG-----EIP-- 329 (1014)
Q Consensus 260 ~~~~l~~--L~~L~L~~N~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----~~p-- 329 (1014)
.+..+.. |+.|++++|++.+..+..+... +|+.|++++|.+.+..+..|..+++|+.|++++|...+ .+|
T Consensus 241 ~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i 320 (680)
T 1ziw_A 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI 320 (680)
T ss_dssp TTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEE
T ss_pred HHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCCCCCCCCC
T ss_conf 75146767788877878876756802116741056855778856765865626788855773633132133333554543
Q ss_pred --CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC--CCCHHHHC--CCCCCEEECCCCCCCCCCCCC
Q ss_conf --646898899720244873322498655389999356512664566--78823221--897447971466567999955
Q 001778 330 --EGIGLLPSLKDVRLFNNMLSGALPPDFGRYSPLEYFEVSVNNLTG--SLPEHLCA--GGKLAGIAAQDNNLSGELPES 403 (1014)
Q Consensus 330 --~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~--~~~L~~L~l~~n~l~~~~~~~ 403 (1014)
..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.. .....+.. ..+|+.+++++|.+.+..+..
T Consensus 321 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~ 400 (680)
T 1ziw_A 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 400 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTT
T ss_pred CHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCEECHHH
T ss_conf 86562467778888798982687885574065687289887980144323532202455686766889999777677544
Q ss_pred CCCCCCCCEEEEECCEEECCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCEECCCCCCCC--CCCCCCCCCCC
Q ss_conf 2247866289963664406777-6544554445001347855678898677--88763114456123--76787656887
Q 001778 404 LGNCSSLLMVKIYNNSFTGNIP-AGLWTGFNLSMVLISDNLFTGELPDKMS--GNLSRLEISNNRFS--GKIPTGVSSSK 478 (1014)
Q Consensus 404 l~~l~~L~~L~L~~N~l~~~~p-~~~~~~~~l~~l~l~~n~~~~~~p~~~~--~~L~~L~Ls~N~l~--~~~~~~~~~l~ 478 (1014)
|..+++|+.|++++|.+.+.+| ..+....+|+.+++++|.+.+..+..+. ++|+.|++++|.+. +..|..+.+++
T Consensus 401 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~ 480 (680)
T 1ziw_A 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480 (680)
T ss_dssp TTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT
T ss_pred HHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCC
T ss_conf 20778888886778757543575532575461278448997542276455007543101101464422566776455578
Q ss_pred CCEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCC--------CCCCCCCCCCCEECCCCCCCCCCCCCCCCCC
Q ss_conf 52699945871254224433364445443154443478886--------4412311223000346614223696656666
Q 001778 479 NLVVFQASNNLFNGTIPGELTALPSLTTLLLDQNQLSGSLP--------LDIISWKSLTALNLSRNQLSGEIPEKIGFLP 550 (1014)
Q Consensus 479 ~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 550 (1014)
+|+.|++++|.+.+..+..|..+++|+.|+|++|.+++..+ ..+..+++|+.|+|++|+++...+..|.+++
T Consensus 481 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~ 560 (680)
T 1ziw_A 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF 560 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHCCCCC
T ss_conf 78999899998776794463455346888588997300000004677414233799888888999978877977734666
Q ss_pred CCCEEECCCCCCCCCCCHHHHHH-CCCCCCCCCCCCCCCCCHHHH-H--HCCCCCCCCCCCCCCCCC
Q ss_conf 43311048883656791245430-022012578834366890444-2--012344447988878888
Q 001778 551 VLQDLDLSENQFSGKIPPQIGRL-MLTSLNLSSNRLTGEIPSQFE-N--RAYASSFLNNPGLCASSS 613 (1014)
Q Consensus 551 ~L~~L~ls~N~l~~~~p~~~~~~-~l~~l~l~~N~l~~~~p~~~~-~--~~~~~~~~~n~~~c~~~~ 613 (1014)
.|+.|+|++|++++..+..+..+ .|+.|++++|.+++.++..+. . ......+.+||+.|++..
T Consensus 561 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 561 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 7522389999777679768378988888989999687059668301146657798318970257766
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=483.61 Aligned_cols=522 Identities=19% Similarity=0.167 Sum_probs=364.8
Q ss_pred CCCEEECCC-----------CEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 993683999-----------644883105467755897788999852998746977999871222778763612445335
Q 001778 63 WPEIACTDG-----------SVTELHLTNMNMNGTFPPFICDLRNLTILDLQFNYIISQFPRVLYNCSKLEYLDLSQNYF 131 (1014)
Q Consensus 63 w~gv~c~~~-----------~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l 131 (1014)
+..+.|... .++.|+++++.+++..+..|+++++|++|+|++|++++..|..|.++++|++|+|++|.+
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCC
T ss_conf 72377777980628677898675898158734717966725676652897889835524851136843367644889856
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCC
Q ss_conf 89999210034655565501766789884212056766657403433479876113675300235201356889999991
Q 001778 132 IGPIPEDIDRLSRLKFLYLTANNMSGKIPASIGRLTELRQLNLVVNQFNGSIPAEIGNLQNLEALELAYNTEFSPSSLPS 211 (1014)
Q Consensus 132 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~lp~ 211 (1014)
++..|..|+.+++|++|++++|.+++..|..+..+++|++|++++|.+.+.....+..+++|+.|++++|++. ...|.
T Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~ 171 (606)
T 3t6q_A 94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH--YLSKE 171 (606)
T ss_dssp SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC--EECHH
T ss_pred CCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC--CCCHH
T ss_conf 5458655234421537652126766578101223782238988798341147654568765687776568445--54965
Q ss_pred CCCCCCCCC--EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCC-----CCCCCC
Q ss_conf 000123333--0003366665754211136645553440256446868900107999867983589888-----888920
Q 001778 212 NFTQLKKLK--KLWMASTNLIGEIPETIGDMLALEFLDLSINNFTGSIPSSVFKLKNLSKVYLYSNSLS-----GEIPQA 284 (1014)
Q Consensus 212 ~~~~l~~L~--~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-----~~~~~~ 284 (1014)
.+..+++|+ .|++++|.+.+..|..+.. .+|+.|++++|. ..+..+..+.++....+..+.+. ...+..
T Consensus 172 ~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~ 247 (606)
T 3t6q_A 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247 (606)
T ss_dssp HHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGG
T ss_pred HHHHHCCCCEEEEECCCCCCCCCCHHHHHH-CCCCCCCCCCCH---HHHHHHHHCCCCCHHHEECHHHCCCCCCCCCHHH
T ss_conf 633221564038966798147548667300-100135567726---6777765133564422002011026412268667
Q ss_pred CCC---CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 013---65355442366467889976434222342002143201468864689889972024487332249865538999
Q 001778 285 VES---LNLKVIDLSANNLTGAIPNDFGKLENLLNLSLMFNQLSGEIPEGIGLLPSLKDVRLFNNMLSGALPPDFGRYSP 361 (1014)
Q Consensus 285 ~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 361 (1014)
+.. .+++.|++++|.+++..+..|..+++|+.|++++|+++ .+|..+..+++|+.|++++|.+.+..+..+..+++
T Consensus 248 ~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 326 (606)
T 3t6q_A 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS 326 (606)
T ss_dssp GGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTT
T ss_pred HCHHHCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCC
T ss_conf 43032075059994457658557777445667888956288267-77821416546888977168768676023301576
Q ss_pred CCEEECCCCCCCCCCCH-HHHCCCCCCEEECCCCCCCCCC--CCCCCCCCCCCEEEEECCEEECCCCCCCCCCCCCCCCC
Q ss_conf 93565126645667882-3221897447971466567999--95522478662899636644067776544554445001
Q 001778 362 LEYFEVSVNNLTGSLPE-HLCAGGKLAGIAAQDNNLSGEL--PESLGNCSSLLMVKIYNNSFTGNIPAGLWTGFNLSMVL 438 (1014)
Q Consensus 362 L~~L~L~~N~l~~~~p~-~~~~~~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~l~ 438 (1014)
|++|++++|.+.+.++. .+..+++|+.|++++|.+.+.. +..+..+++|++|++++|.+.+..|..+....+|+.++
T Consensus 327 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 406 (606)
T 3t6q_A 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406 (606)
T ss_dssp CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEE
T ss_pred CCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEE
T ss_conf 89888989974443462455066758988788996664567522105678889898989967757888734774577687
Q ss_pred CCCCCCCCCCCCC-C--CCCCCEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC---CCCCCCCCCCCCEECCCCC
Q ss_conf 3478556788986-7--78876311445612376787656887526999458712542---2443336444544315444
Q 001778 439 ISDNLFTGELPDK-M--SGNLSRLEISNNRFSGKIPTGVSSSKNLVVFQASNNLFNGT---IPGELTALPSLTTLLLDQN 512 (1014)
Q Consensus 439 l~~n~~~~~~p~~-~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~---~p~~~~~l~~L~~L~Ls~N 512 (1014)
+++|.+.+..+.. + .++|+.|++++|.+.+..+..+.++++|+.|++++|.+.+. .+..+..+++|+.|++++|
T Consensus 407 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486 (606)
T ss_dssp CTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred CCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCEEECCCC
T ss_conf 88886777565212417655888989898557768778737887888989899888543454312404887668879999
Q ss_pred CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHH-CCCCCCCCCCCCCCCCCH
Q ss_conf 3478886441231122300034661422369665666643311048883656791245430-022012578834366890
Q 001778 513 QLSGSLPLDIISWKSLTALNLSRNQLSGEIPEKIGFLPVLQDLDLSENQFSGKIPPQIGRL-MLTSLNLSSNRLTGEIPS 591 (1014)
Q Consensus 513 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~-~l~~l~l~~N~l~~~~p~ 591 (1014)
.+++..|..|..+++|+.|++++|++++..|..+..++.| .|++++|++++.+|..+..+ .|+.+++++|++.+..+.
T Consensus 487 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 487 DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred CCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 6670686463265678889898980686896684756651-898768941426876625677878896779986166775
Q ss_pred H
Q ss_conf 4
Q 001778 592 Q 592 (1014)
Q Consensus 592 ~ 592 (1014)
.
T Consensus 566 ~ 566 (606)
T 3t6q_A 566 I 566 (606)
T ss_dssp H
T ss_pred H
T ss_conf 7
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=482.51 Aligned_cols=518 Identities=20% Similarity=0.226 Sum_probs=431.9
Q ss_pred CCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEECCCCCCCCCCCCC
Q ss_conf 99999936839996448831054677558977889998529987469779998-71222778763612445335899992
Q 001778 59 SHCTWPEIACTDGSVTELHLTNMNMNGTFPPFICDLRNLTILDLQFNYIISQF-PRVLYNCSKLEYLDLSQNYFIGPIPE 137 (1014)
Q Consensus 59 ~~c~w~gv~c~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~ 137 (1014)
..|+|..|.+...+++.|+|+++.+++..+..|.++++|++|+|++|...+.+ |..|.++++|++|+|++|.+.+..|.
T Consensus 12 s~~~L~~vP~lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 12 RFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp SCCCSSCCCSSCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHH
T ss_conf 37997778989998688888778678329667766213708867899774441977853787788887989958531976
Q ss_pred CCCCCCCCCEEEECCCCCCCCCCHH--HCCCCCCCEEECCCCCCCCCCC-CCCCCCCCHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 1003465556550176678988421--2056766657403433479876-113675300235201356889999991000
Q 001778 138 DIDRLSRLKFLYLTANNMSGKIPAS--IGRLTELRQLNLVVNQFNGSIP-AEIGNLQNLEALELAYNTEFSPSSLPSNFT 214 (1014)
Q Consensus 138 ~l~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~lp~~~~ 214 (1014)
.|.++++|++|+|++|.+++..|.. +..+++|++|++++|.+.+..+ ..|+++++|+.|++++|.+. ...+..+.
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~--~~~~~~l~ 169 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF--LVCEHELE 169 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC--CCCSGGGH
T ss_pred HCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCC--EECHHHCC
T ss_conf 7157866587017678897340467645566799988898786423256655763889898989898477--66788753
Q ss_pred CC--CCCCEEECCCCCCCCCCCCCCCCCCC------CCEEECCCCCCCCCCCHHHHCC---CCCCEEECCCCC-------
Q ss_conf 12--33330003366665754211136645------5534402564468689001079---998679835898-------
Q 001778 215 QL--KKLKKLWMASTNLIGEIPETIGDMLA------LEFLDLSINNFTGSIPSSVFKL---KNLSKVYLYSNS------- 276 (1014)
Q Consensus 215 ~l--~~L~~L~l~~n~l~~~~p~~~~~l~~------L~~L~L~~N~l~~~~p~~~~~l---~~L~~L~L~~N~------- 276 (1014)
.+ ++|+.|+++.|.+.+..|..++.+++ |+.|++++|.+++..+..+... ..++.+.+..+.
T Consensus 170 ~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~ 249 (844)
T 3j0a_A 170 PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249 (844)
T ss_dssp HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSC
T ss_pred CCCCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCC
T ss_conf 55677503578978866655455332237722357400796578868656778887642744100112121223466444
Q ss_pred --CCCCCCCCCCC---CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf --88888920013---6535544236646788997643422234200214320146886468988997202448733224
Q 001778 277 --LSGEIPQAVES---LNLKVIDLSANNLTGAIPNDFGKLENLLNLSLMFNQLSGEIPEGIGLLPSLKDVRLFNNMLSGA 351 (1014)
Q Consensus 277 --l~~~~~~~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 351 (1014)
+.......+.. .+|+.|++++|.+.+..+..|..+++|+.|++++|++.+..|..|.++++|+.|++++|.+.+.
T Consensus 250 ~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 329 (844)
T 3j0a_A 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329 (844)
T ss_dssp SSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC
T ss_pred CCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC
T ss_conf 56688985565255547861898979945515863452589999998979818987968836888999898989978851
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCEEECCCCCCCCCC
Q ss_conf 98655389999356512664566788232218974479714665679999552247866289963664406777654455
Q 001778 352 LPPDFGRYSPLEYFEVSVNNLTGSLPEHLCAGGKLAGIAAQDNNLSGELPESLGNCSSLLMVKIYNNSFTGNIPAGLWTG 431 (1014)
Q Consensus 352 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~ 431 (1014)
.+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+. ..+++|+.|++++|++. .+|.. .
T Consensus 330 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~---~ 400 (844)
T 3j0a_A 330 YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI---N 400 (844)
T ss_dssp CSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC---C
T ss_pred CHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC-----CCCCCCCHHCCCCCCCC-CCCCC---C
T ss_conf 878846899999898989987762866613788899988989977861-----68898232005899723-14554---5
Q ss_pred CCCCCCCCCCCCCCCCCCCC---CCCCCCEECCCCCCCCCCCCC-CCCCCCCCEEEECCCCCCC-----CCCCCCCCCCC
Q ss_conf 44450013478556788986---778876311445612376787-6568875269994587125-----42244333644
Q 001778 432 FNLSMVLISDNLFTGELPDK---MSGNLSRLEISNNRFSGKIPT-GVSSSKNLVVFQASNNLFN-----GTIPGELTALP 502 (1014)
Q Consensus 432 ~~l~~l~l~~n~~~~~~p~~---~~~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~ls~N~l~-----~~~p~~~~~l~ 502 (1014)
.+++.+++++|.+.+..... -.++|+.|+|++|++++..+. .+..+++|+.|++++|.+. +..+..|..++
T Consensus 401 ~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~ 480 (844)
T 3j0a_A 401 LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLS 480 (844)
T ss_dssp TTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBC
T ss_pred CCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC
T ss_conf 54312214567534575566651277666666778712555543335668731002477773644101355355544755
Q ss_pred CCCEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCCC
Q ss_conf 45443154443478886441231122300034661422369665666643311048883656791245430022012578
Q 001778 503 SLTTLLLDQNQLSGSLPLDIISWKSLTALNLSRNQLSGEIPEKIGFLPVLQDLDLSENQFSGKIPPQIGRLMLTSLNLSS 582 (1014)
Q Consensus 503 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~l~l~~ 582 (1014)
+|+.|+|++|.+++..|..|..+++|+.|+|++|++++..+..+. +.|+.|+|++|++++.+|..+. .|..+++++
T Consensus 481 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~--~L~~l~l~~ 556 (844)
T 3j0a_A 481 HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV--SLSVLDITH 556 (844)
T ss_dssp CEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS--SCCEEEEEE
T ss_pred CCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHHHC--CCCEEEECC
T ss_conf 365777889856553955704501221569999978745710110--0455888988847888966837--768899319
Q ss_pred CCCCCCCCH
Q ss_conf 834366890
Q 001778 583 NRLTGEIPS 591 (1014)
Q Consensus 583 N~l~~~~p~ 591 (1014)
|++.+..+-
T Consensus 557 Np~~C~c~~ 565 (844)
T 3j0a_A 557 NKFICECEL 565 (844)
T ss_dssp ECCCCSSSC
T ss_pred CCCCCCCCC
T ss_conf 970253661
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=474.55 Aligned_cols=518 Identities=20% Similarity=0.202 Sum_probs=354.5
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 96448831054677558977889998529987469779998712227787636124453358999921003465556550
Q 001778 71 GSVTELHLTNMNMNGTFPPFICDLRNLTILDLQFNYIISQFPRVLYNCSKLEYLDLSQNYFIGPIPEDIDRLSRLKFLYL 150 (1014)
Q Consensus 71 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 150 (1014)
..++.|+++++.+++..+..++++++|++|+|++|.+++..+..|.++++|++|++++|.+++..|..|+++++|++|++
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 128 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEEC
T ss_conf 76758878899648569778740667688889998567568545303888898989899668539667415678888989
Q ss_pred CCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCC--CCCCHHHHHCCCCCCCCCCCCCCCCCCC------------
Q ss_conf 17667898842120567666574034334798761136--7530023520135688999999100012------------
Q 001778 151 TANNMSGKIPASIGRLTELRQLNLVVNQFNGSIPAEIG--NLQNLEALELAYNTEFSPSSLPSNFTQL------------ 216 (1014)
Q Consensus 151 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~l~~n~~~~~~~lp~~~~~l------------ 216 (1014)
++|.+++..|..+..+++|++|++++|.+++..+..+. .+++|+.|++++|++.. ..|..+..+
T Consensus 129 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~~~ 206 (680)
T 1ziw_A 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE--FSPGCFHAIGRLFGLFLNNVQ 206 (680)
T ss_dssp CSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCC--BCTTGGGGSSEECEEECTTCC
T ss_pred CCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCC--CCHHHHHHHHHHHHHHCCCCC
T ss_conf 899524667211124556777974588436529788624466632179888982565--581555322344554305664
Q ss_pred ---------------CCCCEEECCCCCCCCCCCCCCCCCCC--CCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCC
Q ss_conf ---------------33330003366665754211136645--5534402564468689001079998679835898888
Q 001778 217 ---------------KKLKKLWMASTNLIGEIPETIGDMLA--LEFLDLSINNFTGSIPSSVFKLKNLSKVYLYSNSLSG 279 (1014)
Q Consensus 217 ---------------~~L~~L~l~~n~l~~~~p~~~~~l~~--L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 279 (1014)
++|+.|++++|.+.+..|..+..++. |+.|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 207 l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 286 (680)
T 1ziw_A 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 286 (680)
T ss_dssp CHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSE
T ss_pred CCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
T ss_conf 68056777877753151008874577436468667514676778887787887675680211674105685577885676
Q ss_pred CCCCCCCCC-CCCEEECCCCCCCC-----CCC----CCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 889200136-53554423664678-----899----76434222342002143201468864689889972024487332
Q 001778 280 EIPQAVESL-NLKVIDLSANNLTG-----AIP----NDFGKLENLLNLSLMFNQLSGEIPEGIGLLPSLKDVRLFNNMLS 349 (1014)
Q Consensus 280 ~~~~~~~~~-~L~~L~Ls~N~l~~-----~~~----~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 349 (1014)
..+..+... +|+.|++++|...+ .+| ..|..+++|+.|++++|.+.+..+..|.++++|+.|++++|.+.
T Consensus 287 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~ 366 (680)
T 1ziw_A 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366 (680)
T ss_dssp ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSC
T ss_pred CCHHHHCCCCCCCEEECCCHHHHCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCHH
T ss_conf 58656267888557736331321333335545438656246777888879898268788557406568728988798014
Q ss_pred C--CCCCCCCCC--CCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEEEECCEEECCC
Q ss_conf 2--498655389--999356512664566788232218974479714665679999-55224786628996366440677
Q 001778 350 G--ALPPDFGRY--SPLEYFEVSVNNLTGSLPEHLCAGGKLAGIAAQDNNLSGELP-ESLGNCSSLLMVKIYNNSFTGNI 424 (1014)
Q Consensus 350 ~--~~~~~~~~l--~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~ 424 (1014)
. .....|..+ +.|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.++ ..|.++++|++|++++|++.+..
T Consensus 367 ~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 446 (680)
T 1ziw_A 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446 (680)
T ss_dssp CCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECC
T ss_pred HHHCCHHHHCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEC
T ss_conf 43235322024556867668899997776775442077888888677875754357553257546127844899754227
Q ss_pred CCCCCCCCCCCCCCCCCCCCC--CCCCCCCC--CCCCEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC-----
Q ss_conf 765445544450013478556--78898677--887631144561237678765688752699945871254224-----
Q 001778 425 PAGLWTGFNLSMVLISDNLFT--GELPDKMS--GNLSRLEISNNRFSGKIPTGVSSSKNLVVFQASNNLFNGTIP----- 495 (1014)
Q Consensus 425 p~~~~~~~~l~~l~l~~n~~~--~~~p~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p----- 495 (1014)
+..+...++++.+++++|.+. +..|..+. .+|+.|++++|++++..+..+.++++|+.|++++|.+.+..+
T Consensus 447 ~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 526 (680)
T 1ziw_A 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPG 526 (680)
T ss_dssp TTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTT
T ss_pred HHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCC
T ss_conf 64550075431011014644225667764555787899989999877679446345534688858899730000000467
Q ss_pred ---CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHH-
Q ss_conf ---4333644454431544434788864412311223000346614223696656666433110488836567912454-
Q 001778 496 ---GELTALPSLTTLLLDQNQLSGSLPLDIISWKSLTALNLSRNQLSGEIPEKIGFLPVLQDLDLSENQFSGKIPPQIG- 571 (1014)
Q Consensus 496 ---~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~- 571 (1014)
..|..+++|+.|+|++|.++...+..|.++++|+.|+|++|++++..+..|..++.|+.|+|++|++++..|..+.
T Consensus 527 ~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 606 (680)
T 1ziw_A 527 GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP 606 (680)
T ss_dssp SCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHH
T ss_pred CCCHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCC
T ss_conf 74142337998888889999788779777346667522389999777679768378988888989999687059668301
Q ss_pred HH-CCCCCCCCCCCCCCCCC
Q ss_conf 30-02201257883436689
Q 001778 572 RL-MLTSLNLSSNRLTGEIP 590 (1014)
Q Consensus 572 ~~-~l~~l~l~~N~l~~~~p 590 (1014)
.+ .|+.+++++|++.+..+
T Consensus 607 ~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 607 AFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp HHTTCSEEECTTCCCCBCCC
T ss_pred CCCCCCEEECCCCCCCCCCC
T ss_conf 14665779831897025776
No 7
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=473.86 Aligned_cols=523 Identities=21% Similarity=0.213 Sum_probs=444.9
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCC-CCCCCCCCCCCEEEECCCC
Q ss_conf 831054677558977889998529987469779998712227787636124453358999-9210034655565501766
Q 001778 76 LHLTNMNMNGTFPPFICDLRNLTILDLQFNYIISQFPRVLYNCSKLEYLDLSQNYFIGPI-PEDIDRLSRLKFLYLTANN 154 (1014)
Q Consensus 76 L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~ 154 (1014)
.+.++++++. +|. -.+.+++|+|++|.+++..|..|.++++|++|+|++|...+.+ |.+|.++++|++|+|++|.
T Consensus 9 ~dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 9 AFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEESCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred EECCCCCCCC-CCC---CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCC
T ss_conf 9823799777-898---999868888877867832966776621370886789977444197785378778888798995
Q ss_pred CCCCCCHHHCCCCCCCEEECCCCCCCCCCCCC--CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 78988421205676665740343347987611--3675300235201356889999991000123333000336666575
Q 001778 155 MSGKIPASIGRLTELRQLNLVVNQFNGSIPAE--IGNLQNLEALELAYNTEFSPSSLPSNFTQLKKLKKLWMASTNLIGE 232 (1014)
Q Consensus 155 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~--~~~l~~L~~L~l~~n~~~~~~~lp~~~~~l~~L~~L~l~~n~l~~~ 232 (1014)
+.+..|..|.++++|++|+|++|.+++..|.. |+++++|++|++++|.+.. ...+..|.++++|++|++++|.+.+.
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~-~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS-LYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCC-CCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred CCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCHHHHHCCCCCEEECCCCCCCEE
T ss_conf 85319767157866587017678897340467645566799988898786423-25665576388989898989847766
Q ss_pred CCCCCCCC--CCCCEEECCCCCCCCCCCHHHHCCCC------CCEEECCCCCCCCCCCCCCCC----CCCCEEECCC---
Q ss_conf 42111366--45553440256446868900107999------867983589888888920013----6535544236---
Q 001778 233 IPETIGDM--LALEFLDLSINNFTGSIPSSVFKLKN------LSKVYLYSNSLSGEIPQAVES----LNLKVIDLSA--- 297 (1014)
Q Consensus 233 ~p~~~~~l--~~L~~L~L~~N~l~~~~p~~~~~l~~------L~~L~L~~N~l~~~~~~~~~~----~~L~~L~Ls~--- 297 (1014)
.+..+..+ ++|+.|+++.|.+.+..+..+..+.+ |+.|++++|.+.+..+..+.. ..+..+.++.
T Consensus 164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~ 243 (844)
T 3j0a_A 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243 (844)
T ss_dssp CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred CHHHCCCCCCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCC
T ss_conf 78875355677503578978866655455332237722357400796578868656778887642744100112121223
Q ss_pred ------CCCCCCCCCCCCCC--CCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf ------64678899764342--2234200214320146886468988997202448733224986553899993565126
Q 001778 298 ------NNLTGAIPNDFGKL--ENLLNLSLMFNQLSGEIPEGIGLLPSLKDVRLFNNMLSGALPPDFGRYSPLEYFEVSV 369 (1014)
Q Consensus 298 ------N~l~~~~~~~~~~l--~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 369 (1014)
|.+.+.....|..+ ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++
T Consensus 244 ~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~ 323 (844)
T 3j0a_A 244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323 (844)
T ss_dssp BCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEES
T ss_pred CCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCC
T ss_conf 46644456688985565255547861898979945515863452589999998979818987968836888999898989
Q ss_pred CCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 64566788232218974479714665679999552247866289963664406777654455444500134785567889
Q 001778 370 NNLTGSLPEHLCAGGKLAGIAAQDNNLSGELPESLGNCSSLLMVKIYNNSFTGNIPAGLWTGFNLSMVLISDNLFTGELP 449 (1014)
Q Consensus 370 N~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~p 449 (1014)
|.+.+..+..+..+++|+.|++++|.+....+..|.++++|+.|++++|.+.+ ++. .++++.+++++|.+. .+|
T Consensus 324 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~----~~~L~~L~l~~N~l~-~l~ 397 (844)
T 3j0a_A 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IHF----IPSIPDIFLSGNKLV-TLP 397 (844)
T ss_dssp CCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CSS----CCSCSEEEEESCCCC-CCC
T ss_pred CCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCC-CCC----CCCCCHHCCCCCCCC-CCC
T ss_conf 97885187884689999989898998776286661378889998898997786-168----898232005899723-145
Q ss_pred CCCCCCCCEECCCCCCCCCCCCC-CCCCCCCCEEEECCCCCCCCCCCC-CCCCCCCCCEECCCCCCCC-----CCCCCCC
Q ss_conf 86778876311445612376787-656887526999458712542244-3336444544315444347-----8886441
Q 001778 450 DKMSGNLSRLEISNNRFSGKIPT-GVSSSKNLVVFQASNNLFNGTIPG-ELTALPSLTTLLLDQNQLS-----GSLPLDI 522 (1014)
Q Consensus 450 ~~~~~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~-----~~~p~~~ 522 (1014)
.. ..+++.|++++|++++.... .+.++++|+.|++++|.+.+..+. .+..+++|+.|+|++|.++ +..|..|
T Consensus 398 ~~-~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~ 476 (844)
T 3j0a_A 398 KI-NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476 (844)
T ss_dssp CC-CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCS
T ss_pred CC-CCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 54-55431221456753457556665127766666677871255554333566873100247777364410135535554
Q ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 23112230003466142236966566664331104888365679124543002201257883436689044420123444
Q 001778 523 ISWKSLTALNLSRNQLSGEIPEKIGFLPVLQDLDLSENQFSGKIPPQIGRLMLTSLNLSSNRLTGEIPSQFENRAYASSF 602 (1014)
Q Consensus 523 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~l~l~~N~l~~~~p~~~~~~~~~~~~ 602 (1014)
.++++|+.|+|++|++++..|..+..++.|+.|+|++|++++..|..+. ..|+.|++++|++++.+|..+. ......+
T Consensus 477 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~~~-~L~~l~l 554 (844)
T 3j0a_A 477 EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNPDVFV-SLSVLDI 554 (844)
T ss_dssp SCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCSCCCS-SCCEEEE
T ss_pred CCCCCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH-CCCCEEECCCCCCCCCCHHHHC-CCCEEEE
T ss_conf 4755365777889856553955704501221569999978745710110-0455888988847888966837-7688993
Q ss_pred CCCCCCCCCC
Q ss_conf 4798887888
Q 001778 603 LNNPGLCASS 612 (1014)
Q Consensus 603 ~~n~~~c~~~ 612 (1014)
.+||+.|+++
T Consensus 555 ~~Np~~C~c~ 564 (844)
T 3j0a_A 555 THNKFICECE 564 (844)
T ss_dssp EEECCCCSSS
T ss_pred CCCCCCCCCC
T ss_conf 1997025366
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=469.67 Aligned_cols=515 Identities=19% Similarity=0.275 Sum_probs=275.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCC----CCC--CCC------------CCEEEC-CCCEEEEEECCCCCCCCCCC
Q ss_conf 99779999999998458999999988999----999--999------------936839-99644883105467755897
Q 001778 29 LYDREHAVLLKLKQHWQNPPPISHWATTN----SSH--CTW------------PEIACT-DGSVTELHLTNMNMNGTFPP 89 (1014)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~~~~w~~~~----~~~--c~w------------~gv~c~-~~~v~~L~l~~~~l~~~~~~ 89 (1014)
+...|+.||++||+++.++ +|+..+ .+| |.| .||.|+ .++|+.|+|+++++.|.+|+
T Consensus 266 ~~~~d~~ALl~~k~~l~~~----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ip~ 341 (876)
T 4ecn_A 266 EYIKDYKALKAIWEALDGK----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPD 341 (876)
T ss_dssp HHHHHHHHHHHHHHHTTGG----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEECG
T ss_pred CCHHHHHHHHHHHHHCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCCCH
T ss_conf 6317899999999973799----988689865336776403466654533576842836999798998724789994855
Q ss_pred CCCCCCCCCEEEC-CCCCCCCCCCCCCCCC----CCCCEECCC------------CCCCCC-----------CCCCCCCC
Q ss_conf 7889998529987-4697799987122277----876361244------------533589-----------99921003
Q 001778 90 FICDLRNLTILDL-QFNYIISQFPRVLYNC----SKLEYLDLS------------QNYFIG-----------PIPEDIDR 141 (1014)
Q Consensus 90 ~l~~l~~L~~L~L-~~n~i~~~~p~~~~~l----~~L~~L~L~------------~n~l~~-----------~~p~~l~~ 141 (1014)
++++|++|++|+| ++|.+.+..|...... ...+...+. ...+++ ..+.....
T Consensus 342 ~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~ 421 (876)
T 4ecn_A 342 AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDS 421 (876)
T ss_dssp GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCC
T ss_pred HHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 77415556284301256335666422234454411567888777666654203751115678787765073324322235
Q ss_pred CCCCCEEEECC--CCCCCCCCHHHCCCCCCCEEECCCCCCCCC-CCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCC--CC
Q ss_conf 46555655017--667898842120567666574034334798-76113675300235201356889999991000--12
Q 001778 142 LSRLKFLYLTA--NNMSGKIPASIGRLTELRQLNLVVNQFNGS-IPAEIGNLQNLEALELAYNTEFSPSSLPSNFT--QL 216 (1014)
Q Consensus 142 l~~L~~L~L~~--n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~l~~n~~~~~~~lp~~~~--~l 216 (1014)
...++.+.+.. |.+++ +|..|+++++|+.|+|++|.+++. ++..+..... |. .-+.+|..++ ++
T Consensus 422 ~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~--------n~--~~g~iP~~l~f~~L 490 (876)
T 4ecn_A 422 RISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANS--------DY--AKQYENEELSWSNL 490 (876)
T ss_dssp CCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTS--------HH--HHHHTTSCCCGGGC
T ss_pred CCCHHHCEECCCCCCCCC-HHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCC--------CC--CCCCCCHHHHHCCC
T ss_conf 442312040566676152-11887569998789796886788746532233222--------22--24458744402559
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC-CCC-CCCHHHHCCC-------CCCEEECCCCCCCCCCCC--CC
Q ss_conf 333300033666657542111366455534402564-468-6890010799-------986798358988888892--00
Q 001778 217 KKLKKLWMASTNLIGEIPETIGDMLALEFLDLSINN-FTG-SIPSSVFKLK-------NLSKVYLYSNSLSGEIPQ--AV 285 (1014)
Q Consensus 217 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~-~~p~~~~~l~-------~L~~L~L~~N~l~~~~~~--~~ 285 (1014)
++|+.|++++|++.+.+|..++++++|+.|++++|+ +++ .+|..+..++ +|+.|++++|++. .+|. .+
T Consensus 491 ~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l 569 (876)
T 4ecn_A 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASL 569 (876)
T ss_dssp TTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHH
T ss_pred CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCC-CCCCHHHH
T ss_conf 99778987189887527387737999899989689876566461778752330155688319982289477-61872355
Q ss_pred CCC-CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCC--
Q ss_conf 136-5355442366467889976434222342002143201468864689889-972024487332249865538999--
Q 001778 286 ESL-NLKVIDLSANNLTGAIPNDFGKLENLLNLSLMFNQLSGEIPEGIGLLPS-LKDVRLFNNMLSGALPPDFGRYSP-- 361 (1014)
Q Consensus 286 ~~~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~-- 361 (1014)
... +|+.|++++|.++ .+| .|..+++|+.|++++|++. .+|..+..+++ |+.|++++|.++ .+|..+..++.
T Consensus 570 ~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~ 645 (876)
T 4ecn_A 570 QKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYV 645 (876)
T ss_dssp TTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSC
T ss_pred HCCCCCCEEECCCCCCC-CCH-HHCCCCCCEEEECCCCCCC-CCHHHHHHCCCCCCEEECCCCCCC-CCCHHHHCCCCCC
T ss_conf 15898898989799825-621-2247985007987187125-035877525114989998499787-4764452255677
Q ss_pred CCEEECCCCCCCCCCCHHHH-----CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCEEECCCCCCCCCCCCCCC
Q ss_conf 93565126645667882322-----1897447971466567999955224786628996366440677765445544450
Q 001778 362 LEYFEVSVNNLTGSLPEHLC-----AGGKLAGIAAQDNNLSGELPESLGNCSSLLMVKIYNNSFTGNIPAGLWTGFNLSM 436 (1014)
Q Consensus 362 L~~L~L~~N~l~~~~p~~~~-----~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~ 436 (1014)
|+.|++++|.+.+.+|...+ ...+|+.|++++|.+.......+..+++|+.|++++|++. .+|..++....
T Consensus 646 L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~--- 721 (876)
T 4ecn_A 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKD--- 721 (876)
T ss_dssp EEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTT---
T ss_pred CCEEECCCCCCCCCCCCCHHHHCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHHCCCC---
T ss_conf 78897708847886432000000135797688983199688659788713898899989899688-54967845553---
Q ss_pred CCCCCCCCCCCCC-CCCCCCCCEECCCCCCCCCCCCCCCC--CCCCCEEEECCCCCCCCCCCCCCCCCCCCCEECCCC--
Q ss_conf 0134785567889-86778876311445612376787656--887526999458712542244333644454431544--
Q 001778 437 VLISDNLFTGELP-DKMSGNLSRLEISNNRFSGKIPTGVS--SSKNLVVFQASNNLFNGTIPGELTALPSLTTLLLDQ-- 511 (1014)
Q Consensus 437 l~l~~n~~~~~~p-~~~~~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~-- 511 (1014)
+ ..-.++|+.|+|++|+|+ .+|..+. .+++|+.|++++|.+.+ +|..+..+++|+.|+|++
T Consensus 722 ------------~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 722 ------------GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp ------------SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB
T ss_pred ------------CCCCCCCCCCEEECCCCCCC-CCHHHHHHCCCCCCCEEEECCCCCCC-CCHHHHCCCCCCEEECCCCC
T ss_conf ------------34321487158988899786-65277624427986989908997876-10566159998899887997
Q ss_pred ----CCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHH-CCCCCCCCCCC
Q ss_conf ----43478886441231122300034661422369665666643311048883656791245430-02201257883
Q 001778 512 ----NQLSGSLPLDIISWKSLTALNLSRNQLSGEIPEKIGFLPVLQDLDLSENQFSGKIPPQIGRL-MLTSLNLSSNR 584 (1014)
Q Consensus 512 ----N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~-~l~~l~l~~N~ 584 (1014)
|.+.+.+|..+..+++|+.|+|++|++ +.+|..+. +.|+.|||++|++....+..+... .+..+.+.+|+
T Consensus 788 ~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~ 862 (876)
T 4ecn_A 788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862 (876)
T ss_dssp CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCT
T ss_pred CCCCCCCCCCCHHHHHCCCCCCEEECCCCCC-CCCCHHHC--CCCCEEECCCCCCCCCCHHHCCCCCCCHHEEECCCC
T ss_conf 7665632444868883699878898879978-74087662--877889997998881176772565423110346888
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=468.54 Aligned_cols=496 Identities=19% Similarity=0.286 Sum_probs=292.4
Q ss_pred CHHHHHHHHHHHHHCCCCCC---------CCCCCCCCCCCCCC---CCEEECC-CCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 97799999999984589999---------99988999999999---9368399-96448831054677558977889998
Q 001778 30 YDREHAVLLKLKQHWQNPPP---------ISHWATTNSSHCTW---PEIACTD-GSVTELHLTNMNMNGTFPPFICDLRN 96 (1014)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~---------~~~w~~~~~~~c~w---~gv~c~~-~~v~~L~l~~~~l~~~~~~~l~~l~~ 96 (1014)
...|+.||.++++++.++.+ .++|+.. .+||.| .||.|+. ++|+.|+|+++++.|.+|+++++|++
T Consensus 28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~-~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~ 106 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFN-KELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTE 106 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCS-SCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTT
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCHHHHCCCC
T ss_conf 778899999999975899745477677657887779-9800014779848767897889984276657728857856845
Q ss_pred CCEEECCCCCC------CC------CCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC-CCCCEEEECCCCCCCCCCHHH
Q ss_conf 52998746977------99------987122277876361244533589999210034-655565501766789884212
Q 001778 97 LTILDLQFNYI------IS------QFPRVLYNCSKLEYLDLSQNYFIGPIPEDIDRL-SRLKFLYLTANNMSGKIPASI 163 (1014)
Q Consensus 97 L~~L~L~~n~i------~~------~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l 163 (1014)
|++|+|++|.+ .+ .+|... +..|+ ++++.|.+.+.+|..+..+ ..+..+++....+..
T Consensus 107 L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~------ 177 (636)
T 4eco_A 107 LEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK------ 177 (636)
T ss_dssp CCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC------
T ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCCHHHH--HHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCC------
T ss_conf 1189876885123774334532356733888--88887-65777554117066677887777642755465410------
Q ss_pred CCCCCCCEEECC--CCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCC------------------CCCCCC--CCCCCCE
Q ss_conf 056766657403--433479876113675300235201356889999------------------991000--1233330
Q 001778 164 GRLTELRQLNLV--VNQFNGSIPAEIGNLQNLEALELAYNTEFSPSS------------------LPSNFT--QLKKLKK 221 (1014)
Q Consensus 164 ~~l~~L~~L~L~--~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~------------------lp~~~~--~l~~L~~ 221 (1014)
.....++.+.+. .|++++ +|..++++++|++|++++|++ .. +|..++ ++++|++
T Consensus 178 ~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l---~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~ 253 (636)
T 4eco_A 178 SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPF---VAENICEAWENENSEYAQQYKTEDLKWDNLKDLTD 253 (636)
T ss_dssp CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCC---CGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCE
T ss_pred CCCCCHHHHHHCCCCCCCCC-CCHHHHCCCCCCEEECCCCCC---CCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCE
T ss_conf 13344213001013677750-787772564787898868823---66423221222221001024863220044687888
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCEEECCCCC-CCC-CCCHHHHCC------CCCCEEECCCCCCCCCCCC--CCCCC-CC
Q ss_conf 0033666657542111366455534402564-468-689001079------9986798358988888892--00136-53
Q 001778 222 LWMASTNLIGEIPETIGDMLALEFLDLSINN-FTG-SIPSSVFKL------KNLSKVYLYSNSLSGEIPQ--AVESL-NL 290 (1014)
Q Consensus 222 L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~-~~p~~~~~l------~~L~~L~L~~N~l~~~~~~--~~~~~-~L 290 (1014)
|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..+..+ ++|+.|++++|+++ .+|. .+... +|
T Consensus 254 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L 332 (636)
T 4eco_A 254 VEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKL 332 (636)
T ss_dssp EEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTC
T ss_pred EEECCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCC-CCCCHHHHCCCCCC
T ss_conf 98048857762838883499978897847988766533578875430465788888989799377-66765554257888
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCC--CCCEEEC
Q ss_conf 55442366467889976434222342002143201468864689889-97202448733224986553899--9935651
Q 001778 291 KVIDLSANNLTGAIPNDFGKLENLLNLSLMFNQLSGEIPEGIGLLPS-LKDVRLFNNMLSGALPPDFGRYS--PLEYFEV 367 (1014)
Q Consensus 291 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~--~L~~L~L 367 (1014)
+.|++++|.+++.+| .|..+++|+.|++++|++. .+|..+..+++ |+.|++++|.++ .+|..+..+. +|++|++
T Consensus 333 ~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~L 409 (636)
T 4eco_A 333 GMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDF 409 (636)
T ss_dssp CEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEEC
T ss_pred CEEECCCCCCCCCHH-HHCCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCC-CCCHHHHHCCCCCCCEEEC
T ss_conf 989690880705166-6478898898989899403-033756510236868985298275-4466553334576688977
Q ss_pred CCCCCCCCCCHHHH-------CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 26645667882322-------18974479714665679999552247866289963664406777654455444500134
Q 001778 368 SVNNLTGSLPEHLC-------AGGKLAGIAAQDNNLSGELPESLGNCSSLLMVKIYNNSFTGNIPAGLWTGFNLSMVLIS 440 (1014)
Q Consensus 368 ~~N~l~~~~p~~~~-------~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~l~l~ 440 (1014)
++|.+.+..|..+. .+.+|+.|++++|.+....+..+..+++|++|++++|++. .+|...+....-
T Consensus 410 s~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~------ 482 (636)
T 4eco_A 410 SYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENE------ 482 (636)
T ss_dssp CSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTE------
T ss_pred CCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHHCCCCC------
T ss_conf 4885788652442002201125898888977279668678788715898898989799788-739788404400------
Q ss_pred CCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCC--CCCCCEEEECCCCCCCCCCCCCCCCCCCCCEECCC------CC
Q ss_conf 78556788986778876311445612376787656--88752699945871254224433364445443154------44
Q 001778 441 DNLFTGELPDKMSGNLSRLEISNNRFSGKIPTGVS--SSKNLVVFQASNNLFNGTIPGELTALPSLTTLLLD------QN 512 (1014)
Q Consensus 441 ~n~~~~~~p~~~~~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls------~N 512 (1014)
...-.++|+.|+|++|+++ .+|..+. .+++|+.|++++|.+.+ +|..+..+++|+.|+|+ +|
T Consensus 483 --------~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N 552 (636)
T 4eco_A 483 --------NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGN 552 (636)
T ss_dssp --------ECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCC
T ss_pred --------CCCCCCCCCEEECCCCCCC-CCCHHHHHCCCCCCCEEECCCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCC
T ss_conf --------1221477338989699388-16854534458876989898998877-6823530888787889888665667
Q ss_pred CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 347888644123112230003466142236966566664331104888365
Q 001778 513 QLSGSLPLDIISWKSLTALNLSRNQLSGEIPEKIGFLPVLQDLDLSENQFS 563 (1014)
Q Consensus 513 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 563 (1014)
.+.+.+|..+..+++|+.|+|++|++ +.+|..+. +.|+.|++++|++.
T Consensus 553 ~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 553 RTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred CCCCCCHHHHHCCCCCCEEECCCCCC-CCCCHHHH--CCCCEEECCCCCCC
T ss_conf 31212737785699878898989947-70597683--86789987699876
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=466.63 Aligned_cols=509 Identities=19% Similarity=0.138 Sum_probs=424.9
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 96448831054677558977889998529987469779998712227787636124453358999921003465556550
Q 001778 71 GSVTELHLTNMNMNGTFPPFICDLRNLTILDLQFNYIISQFPRVLYNCSKLEYLDLSQNYFIGPIPEDIDRLSRLKFLYL 150 (1014)
Q Consensus 71 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 150 (1014)
.+++.|+++++.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCCCCCCCHHHCCCCCCCCEEEC
T ss_conf 87678878889757737545557766748868877366439777306010688678798563048522078653788870
Q ss_pred CCCCCCCCCCHHHCCCCCCCEEECCCCCCCC-CCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCC----EEECC
Q ss_conf 1766789884212056766657403433479-876113675300235201356889999991000123333----00033
Q 001778 151 TANNMSGKIPASIGRLTELRQLNLVVNQFNG-SIPAEIGNLQNLEALELAYNTEFSPSSLPSNFTQLKKLK----KLWMA 225 (1014)
Q Consensus 151 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~l~~n~~~~~~~lp~~~~~l~~L~----~L~l~ 225 (1014)
++|.+++..+..++.+++|++|++++|.+.+ .+|..|+++++|++|++++|++.. ..|..+..+.+|+ .|+++
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT--ITVNDLQFLRENPQVNLSLDMS 189 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE--ECTTTTHHHHHCTTCCCEEECT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECCCCCCEE--CCHHHHHHHHCCCCCCCEEECC
T ss_conf 37755544511348988779896878852325306867326777788766885310--5733412120342002430046
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCCHHHHCCCCCCEEECCCCCCCCC------CCCCC---CCCCCCEEEC
Q ss_conf 66665754211136645553440256446-86890010799986798358988888------89200---1365355442
Q 001778 226 STNLIGEIPETIGDMLALEFLDLSINNFT-GSIPSSVFKLKNLSKVYLYSNSLSGE------IPQAV---ESLNLKVIDL 295 (1014)
Q Consensus 226 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~------~~~~~---~~~~L~~L~L 295 (1014)
+|.+.+..+..+... +|+.|++++|.+. +..|..+..++.++.+.+..+.+... ....+ ....++.+++
T Consensus 190 ~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 268 (606)
T 3vq2_A 190 LNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268 (606)
T ss_dssp TCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEE
T ss_pred CCCCCEECCCCCCCC-EEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHEEC
T ss_conf 897532571105676-0433524678561667788860266565231411110367741026817766665434745012
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf -3664678899764342223420021432014688646898899720244873322498655389999356512664566
Q 001778 296 -SANNLTGAIPNDFGKLENLLNLSLMFNQLSGEIPEGIGLLPSLKDVRLFNNMLSGALPPDFGRYSPLEYFEVSVNNLTG 374 (1014)
Q Consensus 296 -s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 374 (1014)
..|.+.+..+. +..+++|+.|++++|.+. .+| .+..+++|+.|++++|.+ +.+| .+ .++.|+.|++++|...+
T Consensus 269 ~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~ 342 (606)
T 3vq2_A 269 TYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSI 342 (606)
T ss_dssp CCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCE
T ss_pred CCCCCCCCCCCC-CCCCCCCCEEEECCCCCH-HHH-HCCCCCCCCEEECCCCCC-CCCC-CC-CCCCCCEEECCCCCCCC
T ss_conf 366555543222-354887898771476604-435-433401177897646667-6546-67-88755644544786853
Q ss_pred CCCHHHHCCCCCCEEECCCCCCCCC--CCCCCCCCCCCCEEEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC-C
Q ss_conf 7882322189744797146656799--995522478662899636644067776544554445001347855678898-6
Q 001778 375 SLPEHLCAGGKLAGIAAQDNNLSGE--LPESLGNCSSLLMVKIYNNSFTGNIPAGLWTGFNLSMVLISDNLFTGELPD-K 451 (1014)
Q Consensus 375 ~~p~~~~~~~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~p~-~ 451 (1014)
.. .+..+++|+.|++++|.+.+. .+..+..+++|++|++++|.+. .+|..+....+|+.+++++|.+.+..|. .
T Consensus 343 ~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 419 (606)
T 3vq2_A 343 SF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSA 419 (606)
T ss_dssp EC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTT
T ss_pred CH--HHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCC-CCHHHCCCCCCCCEEECCCCCCCCCCCHHH
T ss_conf 10--002489888797758736877520122146775548678899530-005540688888965898870587537645
Q ss_pred C--CCCCCEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC-CCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7--7887631144561237678765688752699945871254-224433364445443154443478886441231122
Q 001778 452 M--SGNLSRLEISNNRFSGKIPTGVSSSKNLVVFQASNNLFNG-TIPGELTALPSLTTLLLDQNQLSGSLPLDIISWKSL 528 (1014)
Q Consensus 452 ~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 528 (1014)
+ .++|+.|++++|++.+..|..+.++++|+.|++++|.+.+ ..|..|..+++|+.|+|++|.+++..|..+..+++|
T Consensus 420 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 499 (606)
T 3vq2_A 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL 499 (606)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred HHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC
T ss_conf 64621378898968978743355534778789898989837985467760457889989898885776486561546468
Q ss_pred CCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHH--CCCCCCCCCCCCCCCCCHH
Q ss_conf 300034661422369665666643311048883656791245430--0220125788343668904
Q 001778 529 TALNLSRNQLSGEIPEKIGFLPVLQDLDLSENQFSGKIPPQIGRL--MLTSLNLSSNRLTGEIPSQ 592 (1014)
Q Consensus 529 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~--~l~~l~l~~N~l~~~~p~~ 592 (1014)
+.|++++|++++.+|..+..++.|+.|++++|+++ .+|..+..+ .|+.+++++|++.+..+..
T Consensus 500 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred CEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCCCCCCCH
T ss_conf 98989899578748777068876898889898376-668767521021748876289866477648
Done!