Query 001779
Match_columns 1014
No_of_seqs 326 out of 1255
Neff 5.8
Searched_HMMs 29240
Date Tue Mar 26 17:02:26 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001779.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1074-1078//hhsearch_pdb/001779hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tzt_A Glycosyl transferase fa 1.0 1 1 341.1 18.1 255 705-974 4-274 (276)
2 1g9r_A Glycosyl transferase; a 1.0 1 1 308.5 13.4 229 707-953 1-253 (311)
3 1ll2_A Glycogenin-1; protein-s 1.0 1 1 198.4 16.3 230 706-979 4-265 (333)
4 3u2u_A Glycogenin-1, GN-1, GN1 1.0 1 1 182.9 13.2 203 710-955 8-224 (263)
5 1o7q_A N-acetyllactosaminide a 1.0 1 1 49.4 15.6 224 703-943 46-278 (289)
6 3ioh_A Histo-blood group ABO s 1.0 1 1 46.1 13.0 224 703-943 56-288 (298)
7 4ayl_A BOGT-metal-independent 1.0 1 1 39.1 12.5 214 706-941 2-227 (246)
8 3gha_A Disulfide bond formatio 1.0 1 1 22.4 15.8 165 165-351 28-196 (202)
9 3gn3_A Putative protein-disulf 1.0 1 1 22.2 17.1 164 166-342 14-181 (182)
10 4dvc_A Thiol:disulfide interch 1.0 1 1 19.7 17.5 158 166-345 21-180 (184)
No 1
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=1.00 E-value=1 Score=341.10 Aligned_cols=255 Identities=18% Similarity=0.224 Sum_probs=211.5
Q ss_pred CEEEEEEEECCCCHHHHHHHHHHHHHHCCC-CCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCC
Q ss_conf 715799965183228999999999998099-9809999949999658989998877719699999803882012341111
Q 001779 705 KTINIFSIASGHLYERFLKIMILSVLKNTC-RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQ 783 (1014)
Q Consensus 705 ~~InIf~vAsg~~Ye~~l~vmI~SIl~nt~-~~vkF~Ii~~~lS~~~k~~L~~l~~~~~~~i~~v~i~wP~~L~~q~~~~ 783 (1014)
..|||++ ++|++|.++++++|+||++|++ .+++|||+++++++++++.|+.+.+.++++|+++.++ +.++.......
T Consensus 4 m~i~I~~-~~d~~Y~~~~~v~i~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~-~~~~~~~~~~~ 81 (276)
T 3tzt_A 4 MADALLL-TLDENYIPQMKVLMTSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRAT-DDLFSFAKVTD 81 (276)
T ss_dssp -CEEEEE-ECCGGGHHHHHHHHHHHHHHSTTCCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC------------
T ss_pred EEEEEEE-EECHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEC-HHHHHCCCCCC
T ss_conf 0678999-957868999999999999849987648999828999999999999998759989999828-89971486446
Q ss_pred CH-HHHHHHHHHCCCCCCCCCEEEEEECCEEECCCCHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHCCC-CC
Q ss_conf 07-99999996200178899929999276532379367771399997079941147888878852112001210059-99
Q 001779 784 RI-IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLR-GR 861 (1014)
Q Consensus 784 r~-~~~Y~RLfLp~LlP~~vdKVLYLDaDiIV~~DL~eL~~lDL~g~~iAav~d~~s~~~m~g~~fwk~gyw~~~L~-~~ 861 (1014)
|+ .++|.||++|.+||.+++||||||+|++|++||.+||++|++++++|||+||.... |..++++..++ ..
T Consensus 82 ~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d~~~~~-------~~~~~~~~~l~~~~ 154 (276)
T 3tzt_A 82 RYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASHTGKTD-------MANNVNRIRLGTDT 154 (276)
T ss_dssp --CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC--------------------------
T ss_pred CCCHHHHHHHHHHHHCCCCCCEEEEEECCEEECCCHHHHHHCCCCCCEEEEEEECCCCH-------HHHHHHHHCCCCCC
T ss_conf 54899999999999700116849999188564179899962588998699998234411-------77888874379888
Q ss_pred CEEEEEEEEEEHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCEEEECC-CCCCCCCCCC---------
Q ss_conf 804300587854989865189999999998516999987888771201115685346098-3212457556---------
Q 001779 862 PYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVPIFSLPQ-EWLWCESWCG--------- 931 (1014)
Q Consensus 862 ~YfNSGVlLiNL~kwR~~~~~dklr~~~q~Ls~d~~sL~~~DQDlLN~v~~~~~I~~Lp~-~wN~~~~w~~--------- 931 (1014)
+||||||||+|+++||+.+++++++.++++ ++.++.++|||+||.+|.+ +|+.||+ +||++..+..
T Consensus 155 ~yfNsGV~linl~~~R~~~~~~~~~~~~~~---~~~~~~~~DQd~LN~~f~~-~~~~Lp~~~wN~~~~~~~~~~~~~~~~ 230 (276)
T 3tzt_A 155 DYYNSGLLLINLKRAREEIDPDEIFSFVED---NHMNLLLPDQDILNAMYGD-RIYPLDDLIYNYDARNYSSYLIRSKKQ 230 (276)
T ss_dssp -CEEEEEEEEEHHHHHHHCCHHHHHHHHHH---C--------CHHHHHHHGG-GEEEEEHHHHSEETTCHHHHHHHTTTC
T ss_pred CEEEEEEEEEEHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHHHHHHHC-CEEECCCHHEEEECCCCHHHHCCCCCH
T ss_conf 747720799879999864299999999996---6366657884599999858-989988532145323220331066312
Q ss_pred ---CCCCCCCEEEECCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf ---5446897189756999999604576510246770446889999
Q 001779 932 ---NATKSKAKTIDLCNNPMTKEPKLQGARRIVSEWPDLDSEARQF 974 (1014)
Q Consensus 932 ---~e~~~~akiIh~~~np~tK~~kl~~a~r~~~~W~~yd~e~~~~ 974 (1014)
++..+.+++||||+. .|+|.-....++...|+.|-.....+
T Consensus 231 ~~~~~~~~~~~iiHy~g~--~KPW~~~~~~~~~~~w~~Y~~~~~~~ 274 (276)
T 3tzt_A 231 ADLAWLMDHTVVLHFCGR--DKPWKKNHRNKFTSLYKHYMSLTKRY 274 (276)
T ss_dssp CSHHHHHHHCCEEECCSS--CCTTSTTCCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCEEEEECCC--CCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 215565149759998999--98968888981599999999999986
No 2
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=1.00 E-value=1 Score=308.48 Aligned_cols=229 Identities=17% Similarity=0.204 Sum_probs=188.5
Q ss_pred EEEEEEECCCCHHHHHHHHHHHH-HHCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCC-CCC
Q ss_conf 57999651832289999999999-9809998099999499996589899988777196999998038820123411-110
Q 001779 707 INIFSIASGHLYERFLKIMILSV-LKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKE-KQR 784 (1014)
Q Consensus 707 InIf~vAsg~~Ye~~l~vmI~SI-l~nt~~~vkF~Ii~~~lS~~~k~~L~~l~~~~~~~i~~v~i~wP~~L~~q~~-~~r 784 (1014)
|||+.+ +|++|.+++.+|+.|| ++|++.+++|||+++++|+++++.|+.+...++.+|.++.++ +.++..... ..+
T Consensus 1 m~I~~~-~d~~Y~~~~~vli~Sl~l~~~~~~~~f~il~~~ls~~~~~~L~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~ 78 (311)
T 1g9r_A 1 MDIVFA-ADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVN-PEDFAGFPLNIRH 78 (311)
T ss_dssp CEEEEE-ECGGGHHHHHHHHHHHHHTCTTSCCEEEEEESSCCHHHHHHHHHHSGGGTTTEEEEECC-GGGGTTSCCCCTT
T ss_pred CEEEEE-CCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECC-HHHHHCCCCCCCC
T ss_conf 949998-77868999999999899976998835999989999999999999998759989999848-8997138654242
Q ss_pred H-HHHHHHHHHCCCCCCCCCEEEEEECCEEECCCCHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHCCC---C
Q ss_conf 7-99999996200178899929999276532379367771399997079941147888878852112001210059---9
Q 001779 785 I-IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLR---G 860 (1014)
Q Consensus 785 ~-~~~Y~RLfLp~LlP~~vdKVLYLDaDiIV~~DL~eL~~lDL~g~~iAav~d~~s~~~m~g~~fwk~gyw~~~L~---~ 860 (1014)
+ .++|.||++|.+|| +++||||||+|+||++||++||++|++++++|||+||.... ...|++.++ .
T Consensus 79 ~s~~~y~Rl~l~~ll~-~~~kvlyLD~D~iv~~di~eL~~~~l~~~~~aav~d~~~~~---------~~~~~~~~~~~~~ 148 (311)
T 1g9r_A 79 ISITTYARLKLGEYIA-DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVER---------QEGYKQKIGMADG 148 (311)
T ss_dssp CCGGGGGGGGHHHHCC-SCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHT---------STTHHHHTTCCTT
T ss_pred CCHHHHHHHHHHHHHH-HCCEEEEECCCEEECCCHHHHHCCCCCCCEEEEEECCCHHH---------HHHHHHHCCCCCC
T ss_conf 7899999999999854-14879998178676267799945287886799984542244---------1999985478889
Q ss_pred CCEEEEEEEEEEHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCEEEECCCCCCCCCCC-------C--
Q ss_conf 9804300587854989865189999999998516999987888771201115685346098321245755-------6--
Q 001779 861 RPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVPIFSLPQEWLWCESWC-------G-- 931 (1014)
Q Consensus 861 ~~YfNSGVlLiNL~kwR~~~~~dklr~~~q~Ls~d~~sL~~~DQDlLN~v~~~~~I~~Lp~~wN~~~~w~-------~-- 931 (1014)
.+||||||||+|+++||+.+++++++.++++ .+.++.++|||+||.++.+ .|..||++||++...+ .
T Consensus 149 ~~yfNsGv~linl~~~r~~~~~~~~~~~~~~---~~~~~~~~DQd~lN~~f~~-~~~~Lp~~wN~~~~~~~~~~~~~~~~ 224 (311)
T 1g9r_A 149 EYYFNAGVLLINLKKWRRHDIFKMSSEWVEQ---YKDVMQYQDQDILNGLFKG-GVCYANSRFNFMPTNYAFMANWFASR 224 (311)
T ss_dssp SCCEEEEEEEECHHHHTTSCHHHHHHHHHHH---HTTTCSSHHHHHHHHHHTT-SEEEECGGGSBCHHHHHTCC----CS
T ss_pred CCEEEEEEEEEEHHHHHHCCHHHHHHHHHHH---CCCCCCCCCCCHHHHHHCC-CEEECCHHHCCCCCHHHHHHHHCCCC
T ss_conf 8468644434609999860269999999996---6576755872799999809-77982800355741456776401466
Q ss_pred ---------CCCCCCCEEEECCCCCCCCCHH
Q ss_conf ---------5446897189756999999604
Q 001779 932 ---------NATKSKAKTIDLCNNPMTKEPK 953 (1014)
Q Consensus 932 ---------~e~~~~akiIh~~~np~tK~~k 953 (1014)
.+....+++||||+. .|+|.
T Consensus 225 ~~~~~~~~~~~~~~~~~iiHy~g~--~KPW~ 253 (311)
T 1g9r_A 225 HTDPLYRDRTNTVMPVAVSHYCGP--AKPWH 253 (311)
T ss_dssp CCCHHHHHHHSCCSSCSEEECCSS--CCTTS
T ss_pred CCHHHHHHHHHCCCCCEEEEECCC--CCCCC
T ss_conf 513566677613699889975996--98997
No 3
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=1.00 E-value=1 Score=198.39 Aligned_cols=230 Identities=14% Similarity=0.122 Sum_probs=157.2
Q ss_pred EEEEEEEECCCCHHHHHHHHHHHHHHCCCC-CEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCC-CCC--C
Q ss_conf 157999651832289999999999980999-809999949999658989998877719699999803882012-341--1
Q 001779 706 TINIFSIASGHLYERFLKIMILSVLKNTCR-PVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLH-KQK--E 781 (1014)
Q Consensus 706 ~InIf~vAsg~~Ye~~l~vmI~SIl~nt~~-~vkF~Ii~~~lS~~~k~~L~~l~~~~~~~i~~v~i~wP~~L~-~q~--~ 781 (1014)
..+|.. ++|.+|..++.+++.|+++|++. ++.| ++++.++++.++.|..+ +..+..+..- +.... ... .
T Consensus 4 ~a~vt~-~~d~~Yl~~a~vl~~SL~~~~s~~~l~v-lv~~~is~~~~~~L~~~----~~~v~~v~~l-~~~~~~~~~~~~ 76 (333)
T 1ll2_A 4 QAFVTL-TTNDAYAKGALVLGSSLKQHRTSRRLAV-LTTPQVSDTMRKALEIV----FDEVITVDIL-DSGDSAHLTLMK 76 (333)
T ss_dssp EEEEEE-ESSHHHHHHHHHHHHHHHHTTCCSEEEE-EECTTSCHHHHHHHHHH----CSEEEECCTT-STTSTTHHHHHH
T ss_pred EEEEEE-EECHHHHHHHHHHHHHHHHHCCCCCEEE-EECCCCCHHHHHHHHHH----CCEEEEEEEC-CCCCHHHCCCCC
T ss_conf 499999-8488799999999999998589998899-98499999999899985----9989998636-873221102024
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCEEEEEECCEEECCCCHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHCCCCC
Q ss_conf 11079999999620017889992999927653237936777139999707994114788887885211200121005999
Q 001779 782 KQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLRGR 861 (1014)
Q Consensus 782 ~~r~~~~Y~RLfLp~LlP~~vdKVLYLDaDiIV~~DL~eL~~lDL~g~~iAav~d~~s~~~m~g~~fwk~gyw~~~L~~~ 861 (1014)
..+...+|.||+++.+ + +++||||||+|++|.+||.+||+++ .+||++|. | | .
T Consensus 77 ~~~~~~t~~Kl~i~~l-~-~ydrvlYLDaD~lv~~di~eLf~~~----~~aAv~d~-------~--------~------~ 129 (333)
T 1ll2_A 77 RPELGVTLTKLHCWSL-T-QYSKCVFMDADTLVLANIDDLFERE----ELSAAPDP-------G--------W------P 129 (333)
T ss_dssp CGGGHHHHHHGGGGGC-T-TCSEEEEECTTEEECSCCGGGGGSC----SSEEEECS-------S--------S------T
T ss_pred CCCHHHHHHHHHHHHH-C-CCCEEEEEECCEEECCCHHHHHCCC----CEEEEECC-------C--------C------C
T ss_conf 6416888899998675-2-7774999838987654999984887----61587457-------8--------8------7
Q ss_pred CEEEEEEEEEEHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCC----EEEECCCCCCCCCC--CC----
Q ss_conf 804300587854989865189999999998516999987888771201115685----34609832124575--56----
Q 001779 862 PYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVP----IFSLPQEWLWCESW--CG---- 931 (1014)
Q Consensus 862 ~YfNSGVlLiNL~kwR~~~~~dklr~~~q~Ls~d~~sL~~~DQDlLN~v~~~~~----I~~Lp~~wN~~~~w--~~---- 931 (1014)
.||||||||+|+.. ...++++..+.+ ..++.++|||+||.++.+.. +..||.+||++... ..
T Consensus 130 ~~fNsGvmlin~~~----~~~~~l~~~~~~----~~~~~~~DQ~~LN~~f~~~~~~~~~~~Lp~~yN~~~~~~~~~~p~~ 201 (333)
T 1ll2_A 130 DCFNSGVFVYQPSV----ETYNQLLHVASE----QGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAF 201 (333)
T ss_dssp TSEEEEEEEECCCH----HHHHHHHHHHHH----TCCTTSSHHHHHHHHTTTTTTSCGGGBCCGGGSEETTHHHHTHHHH
T ss_pred CCEEEEEEEEECCH----HHHHHHHHHHHH----CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCHHCCHHH
T ss_conf 65112599996887----899999999986----4997787789999999750235756158737754665210014777
Q ss_pred CCCCCCCEEEECCCCCCCCCHHHHHH-----------------HCCCCCCH-HHHHHHHHHHHHHC
Q ss_conf 54468971897569999996045765-----------------10246770-44688999999860
Q 001779 932 NATKSKAKTIDLCNNPMTKEPKLQGA-----------------RRIVSEWP-DLDSEARQFTAKIL 979 (1014)
Q Consensus 932 ~e~~~~akiIh~~~np~tK~~kl~~a-----------------~r~~~~W~-~yd~e~~~~~~~~~ 979 (1014)
......+++|||++. .|+|..... ..++..|| .|+..+.....+..
T Consensus 202 ~~~~~~~~IiHf~g~--~KPW~~~~~~~~~~~~~~~~~~~~~~~~~~~~WW~~~~~~~~~~~~~~~ 265 (333)
T 1ll2_A 202 KAFGANAKVVHFLGQ--TKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFTTSVVPLLQQFG 265 (333)
T ss_dssp HHHGGGCSEEECCSS--CCGGGSCEETTTTEEC--------CCHHHHHHHHHHHHHTHHHHHTC--
T ss_pred HHHCCCCEEEEECCC--CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 853389789998999--9988788788765424544454310789999999999762361100331
No 4
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=1.00 E-value=1 Score=182.88 Aligned_cols=203 Identities=16% Similarity=0.172 Sum_probs=145.0
Q ss_pred EEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEE-ECCCCHHHHHHHHHHHHHCCCEEEEEEE-CCCC--CCCCCCCCCCH
Q ss_conf 996518322899999999999809998099999-4999965898999887771969999980-3882--01234111107
Q 001779 710 FSIASGHLYERFLKIMILSVLKNTCRPVKFWFI-KNYLSPQFKDVIPHMAQEYGFEYELITY-KWPT--WLHKQKEKQRI 785 (1014)
Q Consensus 710 f~vAsg~~Ye~~l~vmI~SIl~nt~~~vkF~Ii-~~~lS~~~k~~L~~l~~~~~~~i~~v~i-~wP~--~L~~q~~~~r~ 785 (1014)
++.++|.+|..++.+++.|+.+|++ ...++++ ++.++++.++.|..+ +..+..+.. +.+. .+.. ..+.+.
T Consensus 8 vTl~td~~Yl~ga~vL~~SL~~~~s-~~~lvvLvt~~vs~~~~~~L~~~----~~~vi~V~~l~~~~~~~~~~-~~rp~~ 81 (263)
T 3u2u_A 8 VTLTTNDAYAKGALVLGSSLKQHRT-TRRLVVLATPQVSDSMRKVLETV----FDEVIMVDVLDSGDSAHLTL-MKRPEL 81 (263)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTTC-CSEEEEEECTTSCHHHHHHHHHH----SSEEEECCCCCCCCHHHHHH-TTCTTG
T ss_pred EEEEECHHHHHHHHHHHHHHHHHCC-CCCEEEEECCCCCHHHHHHHHHC----CCEEEEEEECCCCCHHHHHH-HCCCCH
T ss_conf 9999788899999999999998699-98789996278999999999973----99589965358734555653-037516
Q ss_pred HHHHHHHHHCCCCCCCCCEEEEEECCEEECCCCHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEE
Q ss_conf 99999996200178899929999276532379367771399997079941147888878852112001210059998043
Q 001779 786 IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLRGRPYHI 865 (1014)
Q Consensus 786 ~~~Y~RLfLp~LlP~~vdKVLYLDaDiIV~~DL~eL~~lDL~g~~iAav~d~~s~~~m~g~~fwk~gyw~~~L~~~~YfN 865 (1014)
..+|.||++..+.+ ++||||||+|++|.+||.+||+++ .+||++|. | | ..|||
T Consensus 82 ~~~~~kl~~~~l~~--~~~vlylD~D~~v~~~~~~Lf~~~----~~aA~~d~-------~--------~------~~~fN 134 (263)
T 3u2u_A 82 GVTLTKLHCWSLTQ--YSKCVFMDADTLVLANIDDLFDRE----ELSAAPDP-------G--------W------PDCFN 134 (263)
T ss_dssp GGGGGGGGGGGCTT--CSEEEEECTTEEECSCCGGGGGSC----SSEEEECT-------T--------S------TTSEE
T ss_pred HHHHHHHHHCCCCC--CCEEEEECCCEEECCCHHHHHCCC----CCEEECCC-------C--------C------CCCCC
T ss_conf 67759988640247--652899808985135979885787----51470357-------8--------8------76556
Q ss_pred EEEEEEEHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCC----CEEEECCCCCCCCC--CCC----CCCC
Q ss_conf 0058785498986518999999999851699998788877120111568----53460983212457--556----5446
Q 001779 866 SALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTV----PIFSLPQEWLWCES--WCG----NATK 935 (1014)
Q Consensus 866 SGVlLiNL~kwR~~~~~dklr~~~q~Ls~d~~sL~~~DQDlLN~v~~~~----~I~~Lp~~wN~~~~--w~~----~e~~ 935 (1014)
|||||+|.+ .+..+++++.+++ ..++.++|||+||.+|.+. .++.||.+||++.. |.. .+..
T Consensus 135 sGv~li~p~----~~~~~~l~~~~~~----~~~~~~~DQd~LN~~f~~w~~~~~~~~Lp~~yN~~~~~~y~~~~~~~~~~ 206 (263)
T 3u2u_A 135 SGVFVYQPS----VETYNQLLHLASE----QGSFDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIYSYLPAFKVFG 206 (263)
T ss_dssp EEEEEECCC----HHHHHHHHHHHHH----HCCTTSSHHHHHHHHTTTTTTSCGGGBCCGGGSEEHHHHHSSHHHHHHHG
T ss_pred CEEEEECCC----HHHHHHHHHHHHH----CCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHCCCCHHHHHHC
T ss_conf 747997336----7899999999984----28988655789999860434467267689310551323104657778426
Q ss_pred CCCEEEECCCCCCCCCHHHH
Q ss_conf 89718975699999960457
Q 001779 936 SKAKTIDLCNNPMTKEPKLQ 955 (1014)
Q Consensus 936 ~~akiIh~~~np~tK~~kl~ 955 (1014)
.+++|||||+. .|+|...
T Consensus 207 ~~~~IIHf~g~--~KPW~~~ 224 (263)
T 3u2u_A 207 ASAKVVHFLGR--VKPWNYT 224 (263)
T ss_dssp GGCSEEECCSS--SCGGGSE
T ss_pred CCEEEEEECCC--CCCCCCC
T ss_conf 98499988988--9698888
No 5
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=1.00 E-value=1 Score=49.40 Aligned_cols=224 Identities=17% Similarity=0.126 Sum_probs=130.6
Q ss_pred CCCEEEEEEEECCCCHH-HHHHHHHHHHHHCC--CCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEC-CCCCCCC
Q ss_conf 68715799965183228-99999999999809--99809999949999658989998877719699999803-8820123
Q 001779 703 HGKTINIFSIASGHLYE-RFLKIMILSVLKNT--CRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYK-WPTWLHK 778 (1014)
Q Consensus 703 ~~~~InIf~vAsg~~Ye-~~l~vmI~SIl~nt--~~~vkF~Ii~~~lS~~~k~~L~~l~~~~~~~i~~v~i~-wP~~L~~ 778 (1014)
.+-+|-|.++|.| .|. .++.--+.|.-+|- ..++++||++|..+ .++.+.-.-+-++..+.+. -..|
T Consensus 46 ~n~tIGl~vfa~G-kY~~~fl~~Fl~SAEk~Fm~g~~v~YYVFTD~~~-----~~p~v~l~~~r~~~V~~i~~~~~W--- 116 (289)
T 1o7q_A 46 QKITVGLTVFAVG-RYIEHYLEEFLTSANKHFMVGHPVIFYIMVDDVS-----RMPLIELGPLRSFKVFKIKPEKRW--- 116 (289)
T ss_dssp HTCCEEEEEEECT-THHHHHHHHHHHHHHHHBSTTSCEEEEEEESCGG-----GCCCCCCCTTEEEEEEECCCCSSH---
T ss_pred HCCEEEEEEEEEC-CCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCHH-----HCCCCCCCCCCEEEEEEECCCCCC---
T ss_conf 0986999999963-0089999999999998635897579999857822-----177544689975799996000488---
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCEEECCCCHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHCC
Q ss_conf 41111079999999620017889992999927653237936777139999707994114788887885211200121005
Q 001779 779 QKEKQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHL 858 (1014)
Q Consensus 779 q~~~~r~~~~Y~RLfLp~LlP~~vdKVLYLDaDiIV~~DL~eL~~lDL~g~~iAav~d~~s~~~m~g~~fwk~gyw~~~L 858 (1014)
|-.+-+++.+........++ .++|-+.++|+|+++.+++..= .| |..+|...-..-.+....+.|.+..--..++
T Consensus 117 ~d~sm~Rm~~i~~~~~~~~~-~evDYLf~~dvd~~F~~~vG~E---~L-g~lv~~lHp~~y~~~~~~fpYERrp~S~AyI 191 (289)
T 1o7q_A 117 QDISMMRMKTIGEHIVAHIQ-HEVDFLFCMDVDQVFQDKFGVE---TL-GESVAQLQAWWYKADPNDFTYERRKESAAYI 191 (289)
T ss_dssp HHHHHHHHHHHHHHHHHTHH-HHCSEEEEECSSEEECSCBCGG---GC-SSEEEEECTTTTTSCGGGSCCCCCTTSTTCC
T ss_pred CHHHHHHHHHHHHHHHHHHH-HCCCEEEEEECCCEEECCCCHH---HH-HHHHHCCCHHHHCCCCCCCCCCCCCCCEEEE
T ss_conf 46588999999999998774-0288799962785752367887---88-7788803878767897779898896760011
Q ss_pred C---CCCEEEEEEEEEEHHHHHHHCHHHHHHHHHHH-HCCCCCCCCCCCCCHHHHCC-CCCCEEEECCCCCCCCCCCCCC
Q ss_conf 9---99804300587854989865189999999998-51699998788877120111-5685346098321245755654
Q 001779 859 R---GRPYHISALYVVDLKRFRETAAGDNLRVFYET-LSKDPNSLANLDQDLPNYAQ-HTVPIFSLPQEWLWCESWCGNA 933 (1014)
Q Consensus 859 ~---~~~YfNSGVlLiNL~kwR~~~~~dklr~~~q~-Ls~d~~sL~~~DQDlLN~v~-~~~~I~~Lp~~wN~~~~w~~~e 933 (1014)
+ +..|+-+|++==-..+.-+. ++.|...+.. +.++... .++|-.-||..+ ...|.+.|+++|+|.+.+..+.
T Consensus 192 p~~eGdfYY~Ga~fGGt~~~vl~l--~~~c~~~i~~D~~n~I~A-~wHDESHLNKYf~~~KPtKvLSPEY~wd~~~~~p~ 268 (289)
T 1o7q_A 192 PFGEGDFYYHAAIFGGTPTQVLNI--TQECFKGILKDKKNDIEA-QWHDESHLNKYFLLNKPTKILSPEYCWDYHIGLPA 268 (289)
T ss_dssp CTTCCSCCEEEEEEEECHHHHHHH--HHHHHHHHHHHHHTTCCC-TTTHHHHHHHHHHHSCCSEEECGGGSBCGGGCCCT
T ss_pred CCCCCCEEEECEEECCCHHHHHHH--HHHHHHHHHHHHHCCEEE-EECCHHHHHHHHHHCCCCEEECHHHCCCCCCCCCC
T ss_conf 589988788764608738999999--999999999998579078-84236566677764699878787777874458985
Q ss_pred CCCCCEEEEC
Q ss_conf 4689718975
Q 001779 934 TKSKAKTIDL 943 (1014)
Q Consensus 934 ~~~~akiIh~ 943 (1014)
..+..|+++.
T Consensus 269 ~ik~~r~~~~ 278 (289)
T 1o7q_A 269 DIKLVKMSWQ 278 (289)
T ss_dssp TCCSCSEEEC
T ss_pred CCCEEEEEEE
T ss_conf 5517899873
No 6
>3ioh_A Histo-blood group ABO system transferase; GTA, cisab mutant, AA(Gly)B, rossman fold, unliganded, conformation, blood group antigen, glycoprotein; HET: GOL; 1.25A {Homo sapiens} SCOP: c.68.1.9 PDB: 3ioi_A* 3ioj_A* 3u0y_A* 3u0x_A* 1zhj_A* 2o1h_A* 2o1g_A* 3sx5_A* 3sx3_A* 2o1f_A 2rj6_A* 2rj5_A* 2rj7_A* 1zi4_A* 2y7a_A* 3sxb_A* 3sxa_A* 2riz_A 2rj0_A* 2rj1_A* ...
Probab=1.00 E-value=1 Score=46.09 Aligned_cols=224 Identities=15% Similarity=0.188 Sum_probs=125.1
Q ss_pred CCCEEEEEEEECCCCHHHHHHHHHHHHHHCC--CCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEC-CCCCCCCC
Q ss_conf 6871579996518322899999999999809--99809999949999658989998877719699999803-88201234
Q 001779 703 HGKTINIFSIASGHLYERFLKIMILSVLKNT--CRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYK-WPTWLHKQ 779 (1014)
Q Consensus 703 ~~~~InIf~vAsg~~Ye~~l~vmI~SIl~nt--~~~vkF~Ii~~~lS~~~k~~L~~l~~~~~~~i~~v~i~-wP~~L~~q 779 (1014)
.+.+|-+.++|.| .|..++.--+.|.-+|- ..+++|||++|..+ .+|.+.-.-+-.+..+.+. -..| |
T Consensus 56 ~n~tIGl~vfA~G-kY~~fl~~Fl~SAek~Fm~g~~V~YYVFTD~~~-----~vP~v~l~~~r~~~V~~v~~~~~W---q 126 (298)
T 3ioh_A 56 QNTTIGLTVFAIK-KYVAFLKLFLETAEKHFMVGHRVHYYVFTDQPA-----AVPRVTLGTGRQLSVLEVRAYKRW---Q 126 (298)
T ss_dssp TTCEEEEEEEECG-GGGGGHHHHHHHHHHHBSTTSEEEEEEEESCGG-----GSCCCCCCTTEEEEEEECCCCSSH---H
T ss_pred HCCCEEEEEEEEC-CHHHHHHHHHHHHHHHCCCCCEEEEEEEECCHH-----HCCCCCCCCCCEEEEEEECCCCCC---C
T ss_conf 1982999999957-289999999871997506796589999717844-----277655699975999996665678---6
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCEEECCCCHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHCC-
Q ss_conf 1111079999999620017889992999927653237936777139999707994114788887885211200121005-
Q 001779 780 KEKQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHL- 858 (1014)
Q Consensus 780 ~~~~r~~~~Y~RLfLp~LlP~~vdKVLYLDaDiIV~~DL~eL~~lDL~g~~iAav~d~~s~~~m~g~~fwk~gyw~~~L- 858 (1014)
-.+-+.+.+...+....++ .++|-+.++|+|+++.+++..=. | +..+|...-..-.+....|.|.+..--..++
T Consensus 127 d~sm~Rm~~i~~~~~~~~~-~EvDyLfc~dvd~~F~~~vG~E~---L-g~lva~lHp~~y~~~~~~FpYERrp~S~AyIp 201 (298)
T 3ioh_A 127 DVSMRRMEMISDFCERRFL-SEVDYLVCVDVDMEFRDHVGVEI---L-TPLFGTLHPGFYGSSREAFTYERRPQSQAYIP 201 (298)
T ss_dssp HHHHHHHHHHHHHHHHTHH-HHCSEEEEEESSEEECSCBCGGG---C-SSEEEEBCTTTTTSCGGGSCCCCCTTSTTCCC
T ss_pred CCCHHHHHHHHHHHHHHHH-HCCCEEEEECCCCEECCCCCHHH---H-HHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 6649999999999998876-00887999548975305764778---6-75676428134368811086557814541406
Q ss_pred --CCCCEEEEEEEEEEHHHHHHHCHHHHHHHHHH-HHCCCCCCCCCCCCCHHHHCCC-CCCEEEECCCCCCCCCCCC-CC
Q ss_conf --99980430058785498986518999999999-8516999987888771201115-6853460983212457556-54
Q 001779 859 --RGRPYHISALYVVDLKRFRETAAGDNLRVFYE-TLSKDPNSLANLDQDLPNYAQH-TVPIFSLPQEWLWCESWCG-NA 933 (1014)
Q Consensus 859 --~~~~YfNSGVlLiNL~kwR~~~~~dklr~~~q-~Ls~d~~sL~~~DQDlLN~v~~-~~~I~~Lp~~wN~~~~w~~-~e 933 (1014)
.|..|+-+|++==-.....+. ++.|...+. .+.++... .++|-.-||..+. ..|.+.|+++|+|.+.+.+ ..
T Consensus 202 ~~eGdfYY~ga~fGGt~~~vl~L--t~~C~~~i~~D~~n~IeA-~WhDESHLNKYfl~hKPtKvLSPEY~Wd~~~~~~~~ 278 (298)
T 3ioh_A 202 KDEGDFYYGGAFFGGSVQEVQRL--TRACHQAMMVDQANGIEA-VWHDESHLNKYLLRHKPTKVLSPEYLWDQQLLGWPA 278 (298)
T ss_dssp TTCCSCCBCTTEEEEEHHHHHHH--HHHHHHHHHHHHHTTCCC-TTTHHHHHHHHHHHSCCSEEECGGGSBCHHHHCCCT
T ss_pred CCCCCEEEEEEECCCCHHHHHHH--HHHHHHHHHHHHHCCCEE-ECCCHHHHHHHHHHCCCCCEECHHHCCCCCCCCCCC
T ss_conf 99998588644408759999999--999999999998679267-255553656666446898005987748932248976
Q ss_pred CCCCCEEEEC
Q ss_conf 4689718975
Q 001779 934 TKSKAKTIDL 943 (1014)
Q Consensus 934 ~~~~akiIh~ 943 (1014)
..+..|+++.
T Consensus 279 ~i~~~r~~~~ 288 (298)
T 3ioh_A 279 VLRKLRFTAV 288 (298)
T ss_dssp TCSCCCEEEC
T ss_pred CEEEEEEEEC
T ss_conf 0058887751
No 7
>4ayl_A BOGT-metal-independent glycosyltransferase; histo-blood group enzyme; HET: EPE; 1.92A {Bacteroides ovatus} PDB: 4ayj_A*
Probab=1.00 E-value=1 Score=39.05 Aligned_cols=214 Identities=14% Similarity=0.164 Sum_probs=117.7
Q ss_pred EEEEEEEECCCCHHHHHHHHHHHHHHCC--CCC--EEEEEEECCCCHHHHHHHHHHHHHCCCEEEEE-EE-CCCCCCCCC
Q ss_conf 1579996518322899999999999809--998--09999949999658989998877719699999-80-388201234
Q 001779 706 TINIFSIASGHLYERFLKIMILSVLKNT--CRP--VKFWFIKNYLSPQFKDVIPHMAQEYGFEYELI-TY-KWPTWLHKQ 779 (1014)
Q Consensus 706 ~InIf~vAsg~~Ye~~l~vmI~SIl~nt--~~~--vkF~Ii~~~lS~~~k~~L~~l~~~~~~~i~~v-~i-~wP~~L~~q 779 (1014)
+|-|.++|.| .|..++.--+.|.-+|- ..+ |++||++|..+. +|... ...+.+ .+ .. .||.
T Consensus 2 tIGl~vfA~G-kY~~fl~~Fl~SAek~Fm~g~~~~V~yYVFTD~~~~-----vp~~~-~~~v~~-~~~~~~~Wqd----- 68 (246)
T 4ayl_A 2 RIGILYICTG-KYDIFWKDFYLSAERYFMQDQSFIIEYYVFTDSPKL-----YDEEN-NKHIHR-IKQKNLGWPD----- 68 (246)
T ss_dssp EEEEEEECCG-GGGGGHHHHHHHHHHHBSCSTTSEEEEEEEESCSCC-----TTTTT-CTTEEE-EECCCCCTTH-----
T ss_pred EEEEEEEEEC-CHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHH-----CCCCC-CCEEEE-EECCCCCCCC-----
T ss_conf 5999999947-489999999885997614797030699997078665-----87677-753899-8577678865-----
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCEEECCCCHHHHHCCCC-CCCEEEEECCCCCCCCCCCCCCCCHHHHHCC
Q ss_conf 111107999999962001788999299992765323793677713999-9707994114788887885211200121005
Q 001779 780 KEKQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIK-GRPLAYTPFCDNNKDMDGYRFWRQGFWKDHL 858 (1014)
Q Consensus 780 ~~~~r~~~~Y~RLfLp~LlP~~vdKVLYLDaDiIV~~DL~eL~~lDL~-g~~iAav~d~~s~~~m~g~~fwk~gyw~~~L 858 (1014)
.+-+.+.+.... ...+. .++|-+.++|+|+++.+++..=.=+..+ |..+|...-..-.+....+.|.+..--...+
T Consensus 69 -~sm~Rm~~i~~~-~~~~~-~evDyLf~~dvd~~F~~~vG~E~L~p~~~~~lva~lHp~~y~~~~~~fpYERrp~S~AyI 145 (246)
T 4ayl_A 69 -NTLKRFHIFLRI-KEQLE-RETDYLFFFNANLLFTSPIGKEILPPSDSNGLLGTMHPGFYNKPNSEFTYERRDASTAYI 145 (246)
T ss_dssp -HHHTHHHHHHTT-HHHHH-HHCSEEEEECTTEEECSCBCGGGSCCTTSCCEEEEBCGGGC-------------------
T ss_pred -CCHHHHHHHHHH-HHHHH-HHCCEEEEEECCCEEECCCCHHHCCCCCCCCEEEEECHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf -505999999999-99987-647879998378425146777772657788879993614547880108666782554040
Q ss_pred C---CCCEEEEEEEEEEHHHHHHHCHHHHHHHHHH-HHCCCCCCCCCCCCCHHHHCCCC-CCEEEECCCCCCCCCCCCCC
Q ss_conf 9---9980430058785498986518999999999-85169999878887712011156-85346098321245755654
Q 001779 859 R---GRPYHISALYVVDLKRFRETAAGDNLRVFYE-TLSKDPNSLANLDQDLPNYAQHT-VPIFSLPQEWLWCESWCGNA 933 (1014)
Q Consensus 859 ~---~~~YfNSGVlLiNL~kwR~~~~~dklr~~~q-~Ls~d~~sL~~~DQDlLN~v~~~-~~I~~Lp~~wN~~~~w~~~e 933 (1014)
+ +..|+-+|++==-.....+. ++.|...+. .+.++.. -.++|-.-||..+.. .|-..|+++|+|.+.+..
T Consensus 146 p~~eGdfYY~ga~fGG~~~~vl~L--t~~c~~~i~~D~~n~I~-A~whDESHLNKYfl~~KP~~vLSPEY~wd~~~~~-- 220 (246)
T 4ayl_A 146 PEGEGRYYYAGGLSGGCTKAYLKL--CTTICSWVDRDATNHII-PIWHDESLINKYFLDNPPAITLSPAYLYPEGWLL-- 220 (246)
T ss_dssp -----CCCBCSSEEEEEHHHHHHH--HHHHHHHHHHHHTTCSS-CSCCHHHHHHHHHHHSCCSEEECGGGGEETTCCC--
T ss_pred CCCCCCEEEEEEECCCCHHHHHHH--HHHHHHHHHHHHHCCCE-EECCCHHHHHHHHHHCCCCEEECHHHCCCCCCCC--
T ss_conf 699998688654529759999999--99999989999868925-7355565767788767898103887727865689--
Q ss_pred CCCCCEEE
Q ss_conf 46897189
Q 001779 934 TKSKAKTI 941 (1014)
Q Consensus 934 ~~~~akiI 941 (1014)
...+|+|
T Consensus 221 -p~~~kii 227 (246)
T 4ayl_A 221 -PFEPIIL 227 (246)
T ss_dssp -SSCCSEE
T ss_pred -CCCCEEE
T ss_conf -8764899
No 8
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Probab=1.00 E-value=1 Score=22.45 Aligned_cols=165 Identities=11% Similarity=0.074 Sum_probs=88.3
Q ss_pred CCCEEEEEEEECCCHHHHHHHHHHHHHHHC---CCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 753389999858996579999999999744---99960899965699788984047888899874102204669999999
Q 001779 165 VKPVTHLLAVDVTSKKGMKLLHEGIRFLIG---GSNGARLGVLFSASREADLPSIIFVKAFEITASTYSHKKKVLEFLDQ 241 (1014)
Q Consensus 165 ~~~~t~wvv~D~~~~~g~~ll~~al~~~~~---~s~~~Ri~~i~Np~~~~~~~~~~i~~~~~aa~~~~~~~~~~~~~l~~ 241 (1014)
-.++|+.+..||..+.-+++-......+++ ....+|+.+.|-|-... .+..-+++..++.. .. .++...|...
T Consensus 28 ~a~vtvvef~D~~CP~C~~~~~~~~~~l~~~~~~~g~v~~~~~~~p~~~~--~s~~Aa~aa~a~~~-~~-~~~f~~~~~a 103 (202)
T 3gha_A 28 DAPVTVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVNVMFHGK--GSRLAALASEEVWK-ED-PDSFWDFHEK 103 (202)
T ss_dssp TCSEEEEEEECTTCHHHHHHHHHTHHHHHHHTTTTTSEEEEEEECCCSHH--HHHHHHHHHHHHHH-HC-GGGHHHHHHH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCH--HHHHHHHHHHHHHH-HC-HHHHHHHHHH
T ss_conf 99989999879998608989987559999982438849999984676625--38999999999874-18-8899999999
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 844332223210232220148999999888873-1989477741057542246778888999999998289888826997
Q 001779 242 LCSFYERTYLLASSATADSTQAFIDKVCEFAEA-NGLSSKVYRASLPEYSKGKVRKQLNKVVQFLHRQLGVESGANAVIT 320 (1014)
Q Consensus 242 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 320 (1014)
+-...... ...+.+ .+.+.+.++. .|++.+.+..++.+-.. .......... .+.+|+. |.+.+++
T Consensus 104 Lf~~~~~~--------~~~~~~-~~~L~~~a~~~~Gld~~~~~~~l~s~~~---~~~v~~~~~~-a~~~gV~-gtPtfvv 169 (202)
T 3gha_A 104 LFEKQPDT--------EQEWVT-PGLLGDLAKSTTKIKPETLKENLDKETF---ASQVEKDSDL-NQKMNIQ-ATPTIYV 169 (202)
T ss_dssp HHHHCCSS--------SSCCCC-HHHHHHHHHHHSSSCHHHHHHHHHHTTT---HHHHHHHHHH-HHHTTCC-SSCEEEE
T ss_pred HHHHCCCC--------CCCCCC-HHHHHHHHHHHCCCCHHHHHHHHHCHHH---HHHHHHHHHH-HHHCCCC-CCCEEEE
T ss_conf 99838232--------444358-8999999988169999999999959489---9999999999-9986998-2787989
Q ss_pred CCEEECCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 3677459999998975599999999973147
Q 001779 321 NGRVTFPIDESTFLSHDLSLLESVEFKHRIK 351 (1014)
Q Consensus 321 NGR~i~~~~~~~~~~~d~~~l~~~e~~~~~~ 351 (1014)
||+++. ...+.++|..++.....+.+.
T Consensus 170 nG~~~~----G~~~~e~l~~~i~~~~~~~~~ 196 (202)
T 3gha_A 170 NDKVIK----NFADYDEIKETIEKELKGKLE 196 (202)
T ss_dssp TTEECS----CTTCHHHHHHHHHHHHHHC--
T ss_pred CCEEEC----CCCCHHHHHHHHHHHHHHHHH
T ss_conf 999816----989999999999999875654
No 9
>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}
Probab=1.00 E-value=1 Score=22.17 Aligned_cols=164 Identities=13% Similarity=0.096 Sum_probs=86.8
Q ss_pred CCEEEEEEEECCCHHHHHHHHHHHHHHHC-CCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 53389999858996579999999999744-99960899965699788984047888899874102204669999999844
Q 001779 166 KPVTHLLAVDVTSKKGMKLLHEGIRFLIG-GSNGARLGVLFSASREADLPSIIFVKAFEITASTYSHKKKVLEFLDQLCS 244 (1014)
Q Consensus 166 ~~~t~wvv~D~~~~~g~~ll~~al~~~~~-~s~~~Ri~~i~Np~~~~~~~~~~i~~~~~aa~~~~~~~~~~~~~l~~l~~ 244 (1014)
.++|+-+..|+..+.-+++.....+.+++ ....+|+-+-|-|-.- ...+...+++..|+........+...|...|.+
T Consensus 14 a~vtiv~f~D~~Cp~C~~~~~~~~~~l~~~~~g~v~~v~r~~p~~~-h~~s~~aaraa~aa~~~~~~~~~f~~~~~aLf~ 92 (182)
T 3gn3_A 14 GPRLFEVFLEPTCPFSVKAFFKLDDLLAQAGEDNVTVRIRLQSQPW-HMFSGVIVRCILAAATLEGGKESAKAVMTAVAS 92 (182)
T ss_dssp CSEEEEEEECTTCHHHHHHHTTHHHHHHHHCTTTEEEEEEECCCTT-STTHHHHHHHHHHHTTSTTHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC-CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9979999889998718999999999999747997899999768788-821899999999999855684889999999996
Q ss_pred HHHHHHHHCC-CC-CCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECC
Q ss_conf 3322232102-32-220148999999888873198947774105754224677888899999999828988882699736
Q 001779 245 FYERTYLLAS-SA-TADSTQAFIDKVCEFAEANGLSSKVYRASLPEYSKGKVRKQLNKVVQFLHRQLGVESGANAVITNG 322 (1014)
Q Consensus 245 ~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~NG 322 (1014)
.... ..... .. ....+. ..+.+.++++..|++.+.+ +.+ ..+........... +.+|+. |.+++++||
T Consensus 93 ~q~~-~~~~~~~~~~~~~~~-~~~~l~~~a~~~Gld~~~~---l~~---~~~~~~v~~~~~~a-~~~GV~-gtPtf~ing 162 (182)
T 3gn3_A 93 HREE-FEFEHHAGGPNLDAT-PNDIIARIERYSGLALAEA---FAN---PELEHAVKWHTKYA-RQNGIH-VSPTFMING 162 (182)
T ss_dssp TGGG-GSCBTTTBSGGGGCC-HHHHHHHHHHHHTCCCHHH---HHC---GGGHHHHHHHHHHH-HHHTCC-SSSEEEETT
T ss_pred CCCC-CCCCCCCCCCCCCCC-HHHHHHHHHHHHCCCHHHH---HCC---HHHHHHHHHHHHHH-HHCCCC-CCCEEEECC
T ss_conf 2843-342444452347999-7999999999949899998---168---57899999999999-877988-568798999
Q ss_pred EEEC-CCCCCCCCHHHHHHHH
Q ss_conf 7745-9999998975599999
Q 001779 323 RVTF-PIDESTFLSHDLSLLE 342 (1014)
Q Consensus 323 R~i~-~~~~~~~~~~d~~~l~ 342 (1014)
+.++ +. ...+.++|...+
T Consensus 163 ~~~~~~s--~~~~~e~w~~~l 181 (182)
T 3gn3_A 163 LVQPGMS--SGDPVSKWVSDI 181 (182)
T ss_dssp EECTTCC--TTSCHHHHHHHH
T ss_pred EECCCCC--CCCCHHHHHHHH
T ss_conf 9816888--999999999975
No 10
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=1.00 E-value=1 Score=19.67 Aligned_cols=158 Identities=11% Similarity=0.083 Sum_probs=79.4
Q ss_pred CCEEEEEEEECCCHHHHHHHHHHHHHHHCC-CCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 533899998589965799999999997449-9960899965699788984047888899874102204669999999844
Q 001779 166 KPVTHLLAVDVTSKKGMKLLHEGIRFLIGG-SNGARLGVLFSASREADLPSIIFVKAFEITASTYSHKKKVLEFLDQLCS 244 (1014)
Q Consensus 166 ~~~t~wvv~D~~~~~g~~ll~~al~~~~~~-s~~~Ri~~i~Np~~~~~~~~~~i~~~~~aa~~~~~~~~~~~~~l~~l~~ 244 (1014)
.++|+....||..+.-+++-. .+..+.+. ...+++.++|-|-..... ....+++..++ ..+.........+.....
T Consensus 21 ~~~~vvEf~dy~Cp~C~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~a~a~~~~-~~~~~~~~~~~~~~~~~~ 97 (184)
T 4dvc_A 21 SSPVVSEFFSFYCPHCNTFEP-IIAQLKQQLPEGAKFQKNHVSFMGGNM-GQAMSKAYATM-IALEVEDKMVPVMFNRIH 97 (184)
T ss_dssp SSCEEEEEECTTCHHHHHHHH-HHHHHHHTSCTTCEEEEEECSSSSGGG-HHHHHHHHHHH-HHHTCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCHHHHHHHH-HHHHHHHHCCCCEEEEEEECCCCCCCH-HHHHHHHHHHH-HHCCCHHHHHHHHHHHHH
T ss_conf 998899998789875898968-889888646776079997268777824-99999999999-983757899999999999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCEE
Q ss_conf 33222321023222014899999988887319894777410575422467788889999999982898888269973677
Q 001779 245 FYERTYLLASSATADSTQAFIDKVCEFAEANGLSSKVYRASLPEYSKGKVRKQLNKVVQFLHRQLGVESGANAVITNGRV 324 (1014)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~NGR~ 324 (1014)
.... ..... +.+.+.++..|++.+.+..++.+-. ........... .+.+|+. |.+.+++|||+
T Consensus 98 ~~~~---------~~~~~---~~l~~~a~~~Gld~~~~~~~~~s~~---~~~~v~~~~~~-a~~~gv~-gTPtfiINGky 160 (184)
T 4dvc_A 98 TLRK---------PPKDE---QELRQIFLDEGIDAAKFDAAYNGFA---VDSMVHRFDKQ-FQDSGLT-GVPAVVVNNRY 160 (184)
T ss_dssp TSCC---------CCSSH---HHHHHHHHTTTCCHHHHHHHHTSHH---HHHHHHHHHHH-HHHHTCC-SSSEEEETTTE
T ss_pred HHHH---------CCCHH---HHHHHHHHHHCCCHHHHHHHHHCHH---HHHHHHHHHHH-HHHCCCC-CCCEEEECCEE
T ss_conf 8720---------11318---9999999981998899999971999---99999999999-9983987-08889999999
Q ss_pred E-CCCCCCCCCHHHHHHHHHHH
Q ss_conf 4-59999998975599999999
Q 001779 325 T-FPIDESTFLSHDLSLLESVE 345 (1014)
Q Consensus 325 i-~~~~~~~~~~~d~~~l~~~e 345 (1014)
+ ... ..-+.++|..++.+-
T Consensus 161 ~v~~~--~~~s~e~~~~~i~~L 180 (184)
T 4dvc_A 161 LVQGQ--SAKSLDEYFDLVNYL 180 (184)
T ss_dssp EECGG--GCSSHHHHHHHHHHH
T ss_pred EECCC--CCCCHHHHHHHHHHH
T ss_conf 63776--778999999999999
Done!