Your job contains 1 sequence.
>001780
MNRSNGSARKRPPPTPKESWPNKQQATTPTTPVIDDEFLDEDVFLDETLLPEDEESLILR
DIEQRQDFASRLAKWARPPLSSGYVSQCQSIMFQQLDIDYVIGDSNRELLPLSSGSAAII
RIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANRNSKVPQFV
RHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFMTYESN
VLFALRFMIDCNIVGGNWIEVPVGKYRKTAKTLSYCQLEFDCLYSDIISRHPEGEFSKMA
PFRILSFDIECAGRKGHFPEPTHDPVIQVANLVTLQGEKQPFIRNVMTLKSCAPIVGVDV
MSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEKEDVHHSIISDLQNGNAETR
RRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQ
KNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLVT
PEDARKLNLPPECVNKTPSGETFVKSNLQKGILPEILEELLAARKRAKADLKEAKDPLEK
AVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVG
GYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLL
ISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQYV
KSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPY
VIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQISKPLLRIFEPILKNASKELLSG
DHTRSISISTPSNSGIMKFAKRQLSCIGCKALISNGTLCSHCKGREAELYCKTVSQVQEL
EVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKLQLDRWNF
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001780
(1014 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q9LRE6 - symbol:POLD1 "DNA polymerase delta cat... 2782 0. 2
UNIPROTKB|A8HPJ0 - symbol:POLD1 "DNA polymerase" species:... 2083 2.0e-294 2
RGD|621839 - symbol:Pold1 "polymerase (DNA directed), del... 1911 1.4e-280 2
UNIPROTKB|O54747 - symbol:Pold1 "DNA polymerase delta cat... 1911 1.4e-280 2
UNIPROTKB|P28340 - symbol:POLD1 "DNA polymerase delta cat... 1918 2.3e-280 2
MGI|MGI:97741 - symbol:Pold1 "polymerase (DNA directed), ... 1915 2.3e-280 2
ZFIN|ZDB-GENE-060429-1 - symbol:pold1 "polymerase (DNA di... 1981 6.2e-280 2
UNIPROTKB|P28339 - symbol:POLD1 "DNA polymerase delta cat... 1903 1.6e-279 2
UNIPROTKB|F1RH32 - symbol:POLD1 "DNA polymerase" species:... 1897 1.3e-277 2
UNIPROTKB|E2R5W5 - symbol:POLD1 "DNA polymerase" species:... 1889 1.7e-275 2
POMBASE|SPBC336.04 - symbol:cdc6 "DNA polymerase delta ca... 1958 2.9e-271 2
FB|FBgn0263600 - symbol:DNApol-delta "DNA-polymerase-delt... 1882 2.9e-271 2
UNIPROTKB|Q8X0N7 - symbol:B10H4.020 "DNA polymerase" spec... 1964 9.9e-271 2
DICTYBASE|DDB_G0285381 - symbol:polD1 "DNA polymerase del... 1839 1.9e-265 2
UNIPROTKB|J9NS34 - symbol:POLD1 "DNA polymerase" species:... 1656 7.7e-251 2
ASPGD|ASPL0000065466 - symbol:AN7325 species:162425 "Emer... 1443 1.4e-246 3
UNIPROTKB|Q5AWK5 - symbol:AN7325.2 "DNA polymerase" speci... 1443 1.4e-246 3
UNIPROTKB|Q22HL1 - symbol:TTHERM_00636920 "DNA polymerase... 1201 1.0e-235 4
UNIPROTKB|Q755K6 - symbol:AGOS_AFL189W "DNA polymerase" s... 1627 3.1e-234 2
SGD|S000002260 - symbol:POL3 "Catalytic subunit of DNA po... 1628 4.5e-233 2
WB|WBGene00008645 - symbol:F10C2.4 species:6239 "Caenorha... 1677 2.1e-228 2
UNIPROTKB|P90829 - symbol:F10C2.4 "DNA polymerase delta c... 1677 2.1e-228 2
UNIPROTKB|E1BNZ6 - symbol:E1BNZ6 "DNA polymerase" species... 1565 1.4e-227 2
UNIPROTKB|Q7RSZ8 - symbol:PY00203 "DNA polymerase" specie... 1674 2.6e-226 3
GENEDB_PFALCIPARUM|PF10_0165 - symbol:PF10_0165 "DNA poly... 1667 7.9e-223 3
UNIPROTKB|Q7KQL4 - symbol:PF10_0165 "DNA polymerase" spec... 1667 7.9e-223 3
UNIPROTKB|F1P7D5 - symbol:REV3L "DNA polymerase" species:... 704 1.4e-82 5
ZFIN|ZDB-GENE-050302-55 - symbol:rev3l "REV3-like, cataly... 690 6.0e-82 5
UNIPROTKB|E1BPY8 - symbol:REV3L "DNA polymerase" species:... 701 2.5e-81 5
UNIPROTKB|O60673 - symbol:REV3L "DNA polymerase zeta cata... 696 3.8e-81 5
UNIPROTKB|F1NQT0 - symbol:REV3L "DNA polymerase" species:... 704 8.1e-80 5
MGI|MGI:1337131 - symbol:Rev3l "REV3-like, catalytic subu... 679 5.0e-78 5
UNIPROTKB|F1LMP6 - symbol:Rev3l "DNA polymerase" species:... 683 2.0e-77 5
UNIPROTKB|F1M8G6 - symbol:Rev3l "DNA polymerase" species:... 683 2.1e-77 5
UNIPROTKB|Q8TSB3 - symbol:MA_0885 "DNA polymerase" specie... 375 3.2e-74 3
UNIPROTKB|F1P7E8 - symbol:REV3L "DNA polymerase" species:... 704 4.3e-74 4
UNIPROTKB|Q8X1U8 - symbol:UPR1 "DNA polymerase" species:5... 566 2.2e-71 5
POMBASE|SPAC688.10 - symbol:rev3 "DNA polymerase zeta cat... 645 2.0e-70 3
ASPGD|ASPL0000070569 - symbol:uvsI species:162425 "Emeric... 621 4.9e-69 4
FB|FBgn0002891 - symbol:mus205 "mutagen-sensitive 205" sp... 489 1.4e-68 4
UNIPROTKB|I3L6U8 - symbol:LOC100737059 "DNA polymerase" s... 689 8.4e-68 1
SGD|S000006088 - symbol:REV3 "Catalytic subunit of DNA po... 600 2.5e-67 3
UNIPROTKB|G4NL37 - symbol:MGG_02986 "DNA polymerase" spec... 520 2.6e-62 5
UNIPROTKB|Q75F27 - symbol:AGOS_AAL099C "DNA polymerase" s... 596 1.5e-60 5
DICTYBASE|DDB_G0271608 - symbol:rev3 "DNA polymerase zeta... 412 1.1e-56 7
UNIPROTKB|F1RZP3 - symbol:F1RZP3 "Uncharacterized protein... 540 3.2e-51 1
UNIPROTKB|A8IZI8 - symbol:POLZ1 "DNA polymerase" species:... 392 4.1e-49 3
WB|WBGene00021344 - symbol:Y37B11A.2 species:6239 "Caenor... 372 1.7e-44 4
UNIPROTKB|Q9BKQ3 - symbol:Y37B11A.2 "DNA polymerase" spec... 372 1.7e-44 4
UNIPROTKB|Q233J3 - symbol:TTHERM_00391570 "DNA polymerase... 364 1.3e-41 4
UNIPROTKB|Q59J88 - symbol:Q59J88 "DNA polymerase" species... 346 4.3e-39 4
MGI|MGI:99660 - symbol:Pola1 "polymerase (DNA directed), ... 333 2.4e-38 4
RGD|621816 - symbol:Pola1 "polymerase (DNA directed), alp... 339 3.3e-38 4
UNIPROTKB|O89042 - symbol:Pola1 "DNA polymerase alpha cat... 339 3.3e-38 4
UNIPROTKB|P09884 - symbol:POLA1 "DNA polymerase alpha cat... 338 3.5e-38 4
UNIPROTKB|A6NMQ1 - symbol:POLA1 "DNA polymerase" species:... 338 3.6e-38 4
UNIPROTKB|Q59J89 - symbol:Q59J89 "DNA polymerase" species... 350 8.8e-38 4
UNIPROTKB|F6Y1C9 - symbol:POLA1 "DNA polymerase" species:... 335 9.5e-38 3
UNIPROTKB|F1NR19 - symbol:POLA1 "DNA polymerase" species:... 336 1.2e-37 4
UNIPROTKB|Q9DE46 - symbol:pola1 "DNA polymerase alpha cat... 337 3.8e-37 4
UNIPROTKB|E1BJF4 - symbol:POLA1 "DNA polymerase" species:... 338 3.8e-37 4
UNIPROTKB|E2QVU2 - symbol:POLA1 "Uncharacterized protein"... 335 5.9e-37 3
UNIPROTKB|Q59J90 - symbol:Q59J90 "DNA polymerase" species... 325 6.1e-36 5
UNIPROTKB|Q9NAH1 - symbol:Y47D3A.29 "DNA polymerase" spec... 327 5.7e-35 4
WB|WBGene00012936 - symbol:Y47D3A.29a species:6239 "Caeno... 327 6.3e-35 4
UNIPROTKB|C7IVS4 - symbol:Y47D3A.29 "DNA polymerase" spec... 327 6.3e-35 4
ZFIN|ZDB-GENE-030114-9 - symbol:pola1 "polymerase (DNA di... 321 9.0e-35 5
FB|FBgn0259113 - symbol:DNApol-alpha180 "DNA polymerase a... 386 6.4e-32 2
RGD|1307087 - symbol:Rev3l "REV3-like, polymerase (DNA di... 346 2.4e-30 1
UNIPROTKB|I3LIH4 - symbol:POLA1 "DNA polymerase" species:... 271 5.7e-29 3
GENEDB_PFALCIPARUM|PF10_0362 - symbol:PF10_0362 "DNA poly... 248 5.7e-29 7
UNIPROTKB|Q8IJ38 - symbol:PF10_0362 "DNA polymerase" spec... 248 5.7e-29 7
UNIPROTKB|Q7RBM5 - symbol:PY06115 "DNA polymerase" specie... 213 6.8e-29 3
UNIPROTKB|A8IXV5 - symbol:CHLREDRAFT_172920 "Predicted pr... 271 3.4e-27 2
CGD|CAL0002431 - symbol:POL1 species:5476 "Candida albica... 335 2.4e-26 3
UNIPROTKB|Q23AJ0 - symbol:TTHERM_00424700 "DNA polymerase... 268 1.2e-25 4
ASPGD|ASPL0000000737 - symbol:AN10755 species:162425 "Eme... 317 8.1e-25 3
SGD|S000005046 - symbol:POL1 "Catalytic subunit of the DN... 342 8.5e-25 5
UNIPROTKB|Q5B0J8 - symbol:AN5932.2 "DNA polymerase" speci... 317 2.9e-24 3
UNIPROTKB|Q0JHE4 - symbol:Os01g0868300 "DNA polymerase" s... 301 2.8e-23 3
POMBASE|SPAC3H5.06c - symbol:pol1 "DNA polymerase alpha c... 318 3.9e-23 3
UNIPROTKB|O48653 - symbol:LOC_Os01g64820 "DNA polymerase ... 301 5.7e-23 4
UNIPROTKB|P21189 - symbol:polB "DNA polymerase II" specie... 215 6.9e-23 3
UNIPROTKB|Q755Y6 - symbol:AER381C "DNA polymerase" specie... 269 6.5e-21 3
UNIPROTKB|A6V6S5 - symbol:polB "DNA polymerase" species:3... 179 3.6e-19 3
UNIPROTKB|Q7SBT9 - symbol:NCU07870 "DNA polymerase" speci... 244 3.4e-18 3
UNIPROTKB|A8J9T2 - symbol:POLA1 "DNA polymerase" species:... 144 5.3e-18 5
DICTYBASE|DDB_G0282191 - symbol:polA1 "DNA polymerase alp... 246 5.7e-18 2
TIGR_CMR|SO_1820 - symbol:SO_1820 "DNA polymerase II" spe... 222 8.2e-18 2
UNIPROTKB|Q9KSP4 - symbol:VC_1212 "DNA polymerase" specie... 168 3.5e-16 4
TIGR_CMR|VC_1212 - symbol:VC_1212 "DNA polymerase II" spe... 168 3.5e-16 4
UNIPROTKB|P95979 - symbol:dpo3 "DNA polymerase 3" species... 155 2.1e-15 5
TAIR|locus:2028496 - symbol:AT1G49180 species:3702 "Arabi... 220 7.9e-15 1
UNIPROTKB|P26811 - symbol:dpo1 "DNA polymerase 1" species... 175 5.4e-14 2
UNIPROTKB|I3LER4 - symbol:I3LER4 "Uncharacterized protein... 177 2.8e-12 1
TAIR|locus:2059314 - symbol:TIL2 "TILTED 2" species:3702 ... 120 4.9e-08 4
UNIPROTKB|Q747M0 - symbol:GSU3245 "DNA polymerase" specie... 94 7.3e-07 3
TIGR_CMR|GSU_3245 - symbol:GSU_3245 "DNA polymerase II, p... 94 7.3e-07 3
GENEDB_PFALCIPARUM|PFF1470c - symbol:PFF1470c "DNA polyme... 110 1.2e-06 6
UNIPROTKB|C6KTD8 - symbol:PFF1470c "DNA polymerase epsilo... 110 1.2e-06 6
WARNING: Descriptions of 1 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|Q9LRE6 [details] [associations]
symbol:POLD1 "DNA polymerase delta catalytic subunit"
species:39947 "Oryza sativa Japonica Group" [GO:0000084 "S phase of
mitotic cell cycle" evidence=IBA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0006287 "base-excision repair, gap-filling"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0007346 "regulation of mitotic cell
cycle" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0007346 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 EMBL:DP000010 EMBL:AP008217 GO:GO:0051539
SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408 GO:GO:0043137
GO:GO:0003887 GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687 Pfam:PF14260
HOGENOM:HOG000036616 OMA:MIEQTKQ GO:GO:0043625 EMBL:AB037899
EMBL:AC128644 EMBL:AC134047 RefSeq:NP_001067405.1 UniGene:Os.3738
ProteinModelPortal:Q9LRE6 STRING:Q9LRE6 PRIDE:Q9LRE6
EnsemblPlants:LOC_Os11g08330.1 GeneID:4349968
KEGG:dosa:Os11t0186400-00 KEGG:osa:4349968 Gramene:Q9LRE6
ProtClustDB:CLSN2698457 Uniprot:Q9LRE6
Length = 1105
Score = 2782 (984.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 544/655 (83%), Positives = 582/655 (88%)
Query: 367 RDVLLAWR---DFIREVDPDVMIG-YNICKFDLPYLIE-KEDVHHSIISDLQNGNAETRR 421
+DV + R D ++ + D + Y++ +L E KEDVHHSIISDLQNGN+ETRR
Sbjct: 451 KDVAVEGRVQFDLLQAMQRDYKLSSYSLNSVSAHFLGEQKEDVHHSIISDLQNGNSETRR 510
Query: 422 RLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQK 481
RLAVYCLKDAYLPQRLLDKLM+I+NYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQK
Sbjct: 511 RLAVYCLKDAYLPQRLLDKLMYIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQK 570
Query: 482 NLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLVTP 541
NLVIPN+K S Q T+EGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCY TLV P
Sbjct: 571 NLVIPNIKGQASGQDTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVPP 630
Query: 542 EDARKLNLPPECVNKTPSGETFVKSNLQKGXXXXXXXXXXXXXXXXXXXXXXXXXPLEKA 601
EDARKLNLPPE VNKTPSGETFVK ++QKG P E+A
Sbjct: 631 EDARKLNLPPESVNKTPSGETFVKPDVQKGILPEILEELLAARKRAKADLKEAKDPFERA 690
Query: 602 VLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGG 661
VLDGRQLALKISANSVYGFTGATVGQLPC+EISSSVTSYGRQMIEHTKKLVEDKFTT+GG
Sbjct: 691 VLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLGG 750
Query: 662 YEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLLI 721
YEHNAEVIYGDTDSVMVQFGV TVE AMKLGREAADYISGTFIKPIKLEFEK+Y+PYLLI
Sbjct: 751 YEHNAEVIYGDTDSVMVQFGVSTVEDAMKLGREAADYISGTFIKPIKLEFEKIYFPYLLI 810
Query: 722 SKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQYVK 781
SKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRD+PGAVQYVK
Sbjct: 811 SKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDVPGAVQYVK 870
Query: 782 STISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYV 841
+TISDLLMNR+DLSLLVITKGLTKTG+DY VKAAHVELAERMRKRDAATAP VGDRVPYV
Sbjct: 871 NTISDLLMNRVDLSLLVITKGLTKTGEDYAVKAAHVELAERMRKRDAATAPTVGDRVPYV 930
Query: 842 IIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQISKPLLRIFEPILKNASKELLSGD 901
IIKAAKGAKAYERSEDPIYVL+NNIPID YYLENQISKPLLRIFEPILKNAS+ELL G
Sbjct: 931 IIKAAKGAKAYERSEDPIYVLDNNIPIDPQYYLENQISKPLLRIFEPILKNASRELLHGS 990
Query: 902 HTRSISISTPSNSGIMKFAKRQLSCIGCKALIS--NGTLCSHCKGREAELYCKTVSQVQE 959
HTR++SISTPSNSGIMKFAK+QL+C+GCKA+IS N TLC HCKGREAELYCKTV V E
Sbjct: 991 HTRAVSISTPSNSGIMKFAKKQLTCLGCKAVISGSNQTLCFHCKGREAELYCKTVGNVSE 1050
Query: 960 LEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKLQLDRWNF 1014
LE+LFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRR+KAQKDMAEA++QL RW+F
Sbjct: 1051 LEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRRKAQKDMAEARVQLQRWDF 1105
Score = 1497 (532.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 289/424 (68%), Positives = 338/424 (79%)
Query: 5 NGSARKRPPP--TPKESWPNKQQATTPTTPVIXXXXXXXXXXXXXXXX-PEDEESLILRD 61
+G+A KR P TP+ P A T PV EDEE+L+L D
Sbjct: 19 SGAAAKRAHPGGTPQPPPP----AATAAAPVAEEEDMMDEDVFLDETILAEDEEALLLLD 74
Query: 62 IEQRQDFASRLAKWARPPLSSGYVSQC-QSIMFQQLDIDYVIGDSNRELLPLSSGSAAII 120
++ ASRL++W RP L + S C +++ FQQL+IDYVIG+S++ LLP SSG AAI+
Sbjct: 75 RDEA--LASRLSRWRRPALPADLASGCSRNVAFQQLEIDYVIGESHKVLLPNSSGPAAIL 132
Query: 121 RIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANRNSKVPQFV 180
RIFGVTREGHSVCC+VHGFEPYFYISCP GMGPDDIS FHQ LEGRM+++NRNS VP+FV
Sbjct: 133 RIFGVTREGHSVCCQVHGFEPYFYISCPMGMGPDDISRFHQTLEGRMKDSNRNSNVPRFV 192
Query: 181 RHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFMTYESN 240
+ IE+VQK++IM+YQ Q+SQPFLKIVVALPTMVASCRGIL+RGI ++GLG KSF+TYESN
Sbjct: 193 KRIELVQKQTIMHYQPQQSQPFLKIVVALPTMVASCRGILERGITIEGLGSKSFLTYESN 252
Query: 241 VLFALRFMIDCNIVGGNWIEVPVGKYRKTAKTLSYCQLEFDCLYSDIISRHPEGEFSKMA 300
+LFALRFMIDCNIVGGNWIEVP GKY K A+ +SYCQLE DCLYSD++S EGE SKMA
Sbjct: 253 ILFALRFMIDCNIVGGNWIEVPAGKYMKAARIMSYCQLELDCLYSDLVSHAAEGEHSKMA 312
Query: 301 PFRILSFDIECAGRKGHFPEPTHDPVIQVANLVTLQGEKQPFIRNVMTLKSCAPIVGVDV 360
PFRILSFDIECAGRKGHFPEPTHDPVIQ+ANLVTLQGE QPF+RNVMTLKSC+PIVGVDV
Sbjct: 313 PFRILSFDIECAGRKGHFPEPTHDPVIQIANLVTLQGEGQPFVRNVMTLKSCSPIVGVDV 372
Query: 361 MSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEKEDV----HHSIISDLQNGN 416
MSF+TERDVLLAWRDFIREVDPD++IGYNICKFDLPYLIE+ +V I+ ++N
Sbjct: 373 MSFDTERDVLLAWRDFIREVDPDIIIGYNICKFDLPYLIERAEVLKIVEFPILGRIRNSR 432
Query: 417 AETR 420
R
Sbjct: 433 VRVR 436
>UNIPROTKB|A8HPJ0 [details] [associations]
symbol:POLD1 "DNA polymerase" species:3055 "Chlamydomonas
reinhardtii" [GO:0000084 "S phase of mitotic cell cycle"
evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0006287
"base-excision repair, gap-filling" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0043137
"DNA replication, removal of RNA primer" evidence=IBA] [GO:0043625
"delta DNA polymerase complex" evidence=IBA] [GO:0045004 "DNA
replication proofreading" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0043137 GO:GO:0003887 EMBL:DS496108 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687
Pfam:PF14260 GO:GO:0043625 ProtClustDB:CLSN2698457
RefSeq:XP_001689909.1 UniGene:Cre.7835 STRING:A8HPJ0
EnsemblPlants:EDP09647 GeneID:5715105 KEGG:cre:CHLREDRAFT_189721
BioCyc:CHLAMY:CHLREDRAFT_189721-MONOMER Uniprot:A8HPJ0
Length = 1091
Score = 2083 (738.3 bits), Expect = 2.0e-294, Sum P(2) = 2.0e-294
Identities = 410/662 (61%), Positives = 508/662 (76%)
Query: 367 RDVLLAWR---DFIREVDPDVMIG-YNICKFDLPYLIE-KEDVHHSIISDLQNGNAETRR 421
+D+ + R D + + D + Y++ +L E KEDVHHS I+DLQ GN ETRR
Sbjct: 430 KDITIEGRVQFDLLTAIQRDHKLSSYSLNSVSAHFLGEQKEDVHHSAIADLQAGNEETRR 489
Query: 422 RLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQK 481
RLAVYCLKDAYLPQRLLDKLM+ +NY+EMARVTGVP+S+LL+RGQSIKV SQLLRKA K
Sbjct: 490 RLAVYCLKDAYLPQRLLDKLMYTYNYIEMARVTGVPLSYLLTRGQSIKVFSQLLRKAAAK 549
Query: 482 NLVIPNVKQAGSEQGT----YEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYST 537
VIPN+K G G YEGATVL+ + GFY++P+ATLDFASLYPSIMMA+NLCY+T
Sbjct: 550 GFVIPNIKVQGPVAGADGVGYEGATVLDPKIGFYDRPVATLDFASLYPSIMMAHNLCYTT 609
Query: 538 LVTPEDARKLNL-PPECVNKTPSGETFVKSNLQKGXXXXXXXXXXXXXXXXXXXXXXXXX 596
L+T + +LN+ PPE ++PSG+ FV+++ Q+G
Sbjct: 610 LLTKD---QLNIVPPEDREQSPSGDWFVRNSRQRGLLPEILEELLAARKRAKNDLKAEKD 666
Query: 597 PLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKF 656
P ++AVLDGRQLALK+SANSVYGFTGATVG++PC+ IS+S TSYGR+MI T++LV++ +
Sbjct: 667 PFKRAVLDGRQLALKVSANSVYGFTGATVGKMPCLAISASTTSYGREMIMTTRQLVQEHY 726
Query: 657 TTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYY 716
T GYE + EVIYGDTDSVMV F V V AM+LGREAA +S F P+KLEFEKVYY
Sbjct: 727 TRANGYETDCEVIYGDTDSVMVNFKVADVARAMELGREAAAVVSKAFPPPVKLEFEKVYY 786
Query: 717 PYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGA 776
PYLL++KKRYAGL WT PE DKMD+KGIETVRRDNCLLV+N+VT CL +IL+ +D+ GA
Sbjct: 787 PYLLMNKKRYAGLLWTRPETHDKMDSKGIETVRRDNCLLVRNVVTTCLERILIGKDVQGA 846
Query: 777 VQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGD 836
V YVK I+DLLMN++DLSLLVI+KGLT+ D+YE K AHVELA++MRKRD ATAP VGD
Sbjct: 847 VGYVKGVIADLLMNKIDLSLLVISKGLTQDADEYEGKIAHVELAKKMRKRDPATAPAVGD 906
Query: 837 RVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQISKPLLRIFEPILKNASKE 896
RVPYVIIKAAKGAKA+E++EDPIY LE+++PID +YLE+ +S+PLLRIFEP++KN KE
Sbjct: 907 RVPYVIIKAAKGAKAWEKAEDPIYALEHSLPIDVQHYLEHHLSQPLLRIFEPVMKNP-KE 965
Query: 897 LLSGDHTRSISISTPSNS--GIMKFAKRQLSCIGCKALISNG---TLCSHCKGREAELYC 951
LL GDHTR I++STPS + GIM+FAK +SC+ CKA + +G +LC HCK +EAE+Y
Sbjct: 966 LLCGDHTRCIAVSTPSTAAGGIMRFAKVTMSCLACKAPLPSGCKDSLCGHCKPQEAEIYS 1025
Query: 952 KTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKLQLDR 1011
+T+ V ELE +G LWT CQ CQGSLH DVLCTSRDCPIFYRRKK QKD+ EA QLDR
Sbjct: 1026 RTLGTVSELEAQYGALWTACQRCQGSLHMDVLCTSRDCPIFYRRKKVQKDLNEAMGQLDR 1085
Query: 1012 WN 1013
++
Sbjct: 1086 FD 1087
Score = 768 (275.4 bits), Expect = 2.0e-294, Sum P(2) = 2.0e-294
Identities = 159/353 (45%), Positives = 220/353 (62%)
Query: 59 LRDIEQRQDFASRLAKWARPPLSSGYVSQCQSIMFQQLDIDYVIGDSNR--ELLPLSSGS 116
L D+E + A R W RPP++ + +I+FQQL++DY + + + +P+
Sbjct: 47 LEDVELGE--AGR--NWVRPPVAD-FDPASTAIVFQQLEVDYYLAEPRAGVDTVPVEVKQ 101
Query: 117 AAIIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANRNSKV 176
++R+FGV G+SVC VHGFEPYF I G D I L + V
Sbjct: 102 VPVLRLFGVNAAGNSVCALVHGFEPYFLIERRPHWGADHIQALGLALNVGQELLGKAKGV 161
Query: 177 --PQFVRHIEMVQKRSIMYYQQQ-KSQPFLKIVVALPTMVASCRGILDRGIQLDGLG-MK 232
P R IE ++RSI +Q S FLKIVV++P +VA RG+L+ G+ L +
Sbjct: 162 GGPAVTR-IEPAERRSIWNFQPPGTSTAFLKIVVSVPNLVAPARGLLEGGMSLSAVNDFV 220
Query: 233 SFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYR-KTAKTLSYCQLEFDCLYSDIISRH 291
TYESNVLF LRFM+DC +VGGNW+E+P G Y+ +TA+ +++CQ+E Y +IS
Sbjct: 221 KCTTYESNVLFTLRFMVDCKVVGGNWVELPAGAYQLETARPMTHCQIEAHIRYDKLISHA 280
Query: 292 PEGEFSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQVANLVTLQGEKQ-PFIRNVMTLK 350
P+GE+S +AP RI+S DIEC GRKG FPE DPVIQ+A++V++ G+ P ++N+MTL
Sbjct: 281 PDGEYSSVAPLRIMSIDIECCGRKGCFPEAKIDPVIQIASMVSVSGKMDGPVVKNIMTLG 340
Query: 351 SCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEKED 403
SCA IVG +VMSF E ++LL WRD + E DPD++IGYNI FDLPYL E+ D
Sbjct: 341 SCASIVGAEVMSFNDEAEMLLRWRDLLVESDPDIIIGYNILNFDLPYLYERAD 393
>RGD|621839 [details] [associations]
symbol:Pold1 "polymerase (DNA directed), delta 1, catalytic
subunit" species:10116 "Rattus norvegicus" [GO:0000084 "S phase of
mitotic cell cycle" evidence=IEA;ISO;IBA] [GO:0000109
"nucleotide-excision repair complex" evidence=IEA;ISO] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=IEA;ISO] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0003682 "chromatin binding" evidence=IEA;ISO]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISO;IMP;IDA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO;IBA] [GO:0006260
"DNA replication" evidence=ISO] [GO:0006261 "DNA-dependent DNA
replication" evidence=IMP;IDA] [GO:0006287 "base-excision repair,
gap-filling" evidence=IEA;ISO;IBA] [GO:0006297 "nucleotide-excision
repair, DNA gap filling" evidence=IEA;ISO;IBA] [GO:0007346
"regulation of mitotic cell cycle" evidence=IBA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA;ISO;IBA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0043137 "DNA replication,
removal of RNA primer" evidence=IBA] [GO:0043625 "delta DNA
polymerase complex" evidence=IC;IBA] [GO:0045004 "DNA replication
proofreading" evidence=IEA;ISO;IBA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 RGD:621839 GO:GO:0007346
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0003682
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0000731 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616
GO:GO:0043625 GO:GO:0000109 OrthoDB:EOG4KWJS2 EMBL:AJ222691
IPI:IPI00197951 RefSeq:NP_067694.1 UniGene:Rn.88690
ProteinModelPortal:O54747 STRING:O54747 PRIDE:O54747 GeneID:59294
KEGG:rno:59294 UCSC:RGD:621839 InParanoid:O54747 NextBio:611817
Genevestigator:O54747 GermOnline:ENSRNOG00000019681 Uniprot:O54747
Length = 1103
Score = 1911 (677.8 bits), Expect = 1.4e-280, Sum P(2) = 1.4e-280
Identities = 376/617 (60%), Positives = 465/617 (75%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+KEDV HSII+DLQNGN +TRRRLAVYCLKDA+LP RLL++LM + N VEMARVTGVP+
Sbjct: 481 QKEDVQHSIITDLQNGNEQTRRRLAVYCLKDAFLPLRLLERLMVLVNNVEMARVTGVPLG 540
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLD 519
+LLSRGQ +KV+SQLLR+A ++ L++P VK G E Y GATV+E G+Y+ PIATLD
Sbjct: 541 YLLSRGQQVKVVSQLLRQAMREGLLMPVVKTEGGED--YTGATVIEPLKGYYDVPIATLD 598
Query: 520 FASLYPSIMMAYNLCYSTLVTPEDARKLNLPPECVNKTPSGETFVKSNLQKGXXXXXXXX 579
F+SLYPSIMMA+NLCY+TL+ P A+KL L P+ KTP+G+ FVK++++KG
Sbjct: 599 FSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEFIKTPTGDEFVKASVRKGLLPQILEN 658
Query: 580 XXXXXXXXXXXXXXXXXPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTS 639
PL + VLDGRQLALK+S NSVYGFTGA VG+LPC+EIS SVT
Sbjct: 659 LLSARKRAKAELAQETDPLRRQVLDGRQLALKVSPNSVYGFTGAQVGKLPCLEISQSVTG 718
Query: 640 YGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYI 699
+GRQMIE TK+LVE K+T GY+ NA+V+YGDTDSVM +FGV +V AM LGREAA+++
Sbjct: 719 FGRQMIEKTKQLVETKYTLENGYDANAKVVYGDTDSVMCRFGVSSVAEAMSLGREAANWV 778
Query: 700 SGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTN-PEKFDKMDTKGIETVRRDNCLLVKN 758
S F PI+LEFEKVY+PYLLISKKRYAGL +++ + D+MD KG+E VRRDNC LV N
Sbjct: 779 SSHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSSRSDAHDRMDCKGLEAVRRDNCPLVAN 838
Query: 759 LVTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVE 818
LVT L +ILVDRD GAV + K ISDLL NR+D+S LVITK LT+ DY K AHVE
Sbjct: 839 LVTSSLRRILVDRDPDGAVAHAKDVISDLLCNRIDISQLVITKELTRAAADYAGKQAHVE 898
Query: 819 LAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQI 878
LAERMRKRD +APN+GDRVPYVII AAKG AY +SEDP++VLE+++PIDT YYLE Q+
Sbjct: 899 LAERMRKRDPGSAPNLGDRVPYVIIGAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQL 958
Query: 879 SKPLLRIFEPILKNASKE--LLSGDHTRSISISTPSNSGIMKFAKRQLSCIGCKALISN- 935
+KPLLRIFEPIL E LL GDHTR ++ T G++ F KR+ SCIGC+++I +
Sbjct: 959 AKPLLRIFEPILGEGRAESVLLRGDHTRCKTVLTSKVGGLLAFTKRRNSCIGCRSVIDHQ 1018
Query: 936 GTLCSHCKGREAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRR 995
G +C C+ RE+ELY K VS + LE F RLWTQCQ CQGSLH+DV+CTSRDCPIFY R
Sbjct: 1019 GAVCKFCQPRESELYQKEVSHLNALEERFSRLWTQCQRCQGSLHEDVICTSRDCPIFYMR 1078
Query: 996 KKAQKDMAEAKLQLDRW 1012
KK +KD+ + + L R+
Sbjct: 1079 KKVRKDLEDQERLLQRF 1095
Score = 809 (289.8 bits), Expect = 1.4e-280, Sum P(2) = 1.4e-280
Identities = 161/334 (48%), Positives = 214/334 (64%)
Query: 74 KWARP-PLSSGYVSQCQSIMFQQLDIDYVIGDSNR--ELLPLSSGSAAIIRIFGVTREGH 130
+W RP PL+ + ++FQQL+ID+ +G S E P S S I+R FGVT EG
Sbjct: 74 RWLRPTPLALD--PSTEPLIFQQLEIDHYVGTSPPLPEGPPASRNSVPILRAFGVTDEGF 131
Query: 131 SVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANRNSKVPQ--FVRHIEMVQK 188
SVCC +HGF PYFY P G G + +S + L + R K V IE+ +
Sbjct: 132 SVCCHIHGFAPYFYTPAPPGFGAEHLSELQRELNAAISRDQRGGKELSGPAVLAIELCSR 191
Query: 189 RSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFMTYESNVLFALRFM 248
S+ Y PFL+I +ALP ++A R +L++GI++ GLG SF YE+NV F +RFM
Sbjct: 192 ESMFGYHGHGPSPFLRITLALPRLMAPARRLLEQGIRVPGLGTPSFAPYEANVDFEIRFM 251
Query: 249 IDCNIVGGNWIEVPVGKY-RKTAKTLSYCQLEFDCLYSDIISRHPEGEFSKMAPFRILSF 307
+D +IVG NW+E+P GKY R+ K + CQLE D L+SD+IS PEG++ ++AP R+LSF
Sbjct: 252 VDADIVGCNWLELPAGKYVRRAEKKATLCQLEVDVLWSDVISHPPEGQWQRIAPLRVLSF 311
Query: 308 DIECAGRKGHFPEPTHDPVIQVANLVTLQGEKQPFIRNVMTLKSCAPIVGVDVMSFETER 367
DIECAGRKG FPEP DPVIQ+ +L GE +PF+R +TL+ CAPI+G V S+E E
Sbjct: 312 DIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTLRPCAPILGAKVQSYEREE 371
Query: 368 DVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
D+L AW FI +DPDV+ GYNI FDLPYLI +
Sbjct: 372 DLLQAWATFILAMDPDVITGYNIQNFDLPYLISR 405
>UNIPROTKB|O54747 [details] [associations]
symbol:Pold1 "DNA polymerase delta catalytic subunit"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 RGD:621839 GO:GO:0007346
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0003682
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0000731 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616
GO:GO:0043625 GO:GO:0000109 OrthoDB:EOG4KWJS2 EMBL:AJ222691
IPI:IPI00197951 RefSeq:NP_067694.1 UniGene:Rn.88690
ProteinModelPortal:O54747 STRING:O54747 PRIDE:O54747 GeneID:59294
KEGG:rno:59294 UCSC:RGD:621839 InParanoid:O54747 NextBio:611817
Genevestigator:O54747 GermOnline:ENSRNOG00000019681 Uniprot:O54747
Length = 1103
Score = 1911 (677.8 bits), Expect = 1.4e-280, Sum P(2) = 1.4e-280
Identities = 376/617 (60%), Positives = 465/617 (75%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+KEDV HSII+DLQNGN +TRRRLAVYCLKDA+LP RLL++LM + N VEMARVTGVP+
Sbjct: 481 QKEDVQHSIITDLQNGNEQTRRRLAVYCLKDAFLPLRLLERLMVLVNNVEMARVTGVPLG 540
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLD 519
+LLSRGQ +KV+SQLLR+A ++ L++P VK G E Y GATV+E G+Y+ PIATLD
Sbjct: 541 YLLSRGQQVKVVSQLLRQAMREGLLMPVVKTEGGED--YTGATVIEPLKGYYDVPIATLD 598
Query: 520 FASLYPSIMMAYNLCYSTLVTPEDARKLNLPPECVNKTPSGETFVKSNLQKGXXXXXXXX 579
F+SLYPSIMMA+NLCY+TL+ P A+KL L P+ KTP+G+ FVK++++KG
Sbjct: 599 FSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEFIKTPTGDEFVKASVRKGLLPQILEN 658
Query: 580 XXXXXXXXXXXXXXXXXPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTS 639
PL + VLDGRQLALK+S NSVYGFTGA VG+LPC+EIS SVT
Sbjct: 659 LLSARKRAKAELAQETDPLRRQVLDGRQLALKVSPNSVYGFTGAQVGKLPCLEISQSVTG 718
Query: 640 YGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYI 699
+GRQMIE TK+LVE K+T GY+ NA+V+YGDTDSVM +FGV +V AM LGREAA+++
Sbjct: 719 FGRQMIEKTKQLVETKYTLENGYDANAKVVYGDTDSVMCRFGVSSVAEAMSLGREAANWV 778
Query: 700 SGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTN-PEKFDKMDTKGIETVRRDNCLLVKN 758
S F PI+LEFEKVY+PYLLISKKRYAGL +++ + D+MD KG+E VRRDNC LV N
Sbjct: 779 SSHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSSRSDAHDRMDCKGLEAVRRDNCPLVAN 838
Query: 759 LVTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVE 818
LVT L +ILVDRD GAV + K ISDLL NR+D+S LVITK LT+ DY K AHVE
Sbjct: 839 LVTSSLRRILVDRDPDGAVAHAKDVISDLLCNRIDISQLVITKELTRAAADYAGKQAHVE 898
Query: 819 LAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQI 878
LAERMRKRD +APN+GDRVPYVII AAKG AY +SEDP++VLE+++PIDT YYLE Q+
Sbjct: 899 LAERMRKRDPGSAPNLGDRVPYVIIGAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQL 958
Query: 879 SKPLLRIFEPILKNASKE--LLSGDHTRSISISTPSNSGIMKFAKRQLSCIGCKALISN- 935
+KPLLRIFEPIL E LL GDHTR ++ T G++ F KR+ SCIGC+++I +
Sbjct: 959 AKPLLRIFEPILGEGRAESVLLRGDHTRCKTVLTSKVGGLLAFTKRRNSCIGCRSVIDHQ 1018
Query: 936 GTLCSHCKGREAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRR 995
G +C C+ RE+ELY K VS + LE F RLWTQCQ CQGSLH+DV+CTSRDCPIFY R
Sbjct: 1019 GAVCKFCQPRESELYQKEVSHLNALEERFSRLWTQCQRCQGSLHEDVICTSRDCPIFYMR 1078
Query: 996 KKAQKDMAEAKLQLDRW 1012
KK +KD+ + + L R+
Sbjct: 1079 KKVRKDLEDQERLLQRF 1095
Score = 809 (289.8 bits), Expect = 1.4e-280, Sum P(2) = 1.4e-280
Identities = 161/334 (48%), Positives = 214/334 (64%)
Query: 74 KWARP-PLSSGYVSQCQSIMFQQLDIDYVIGDSNR--ELLPLSSGSAAIIRIFGVTREGH 130
+W RP PL+ + ++FQQL+ID+ +G S E P S S I+R FGVT EG
Sbjct: 74 RWLRPTPLALD--PSTEPLIFQQLEIDHYVGTSPPLPEGPPASRNSVPILRAFGVTDEGF 131
Query: 131 SVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANRNSKVPQ--FVRHIEMVQK 188
SVCC +HGF PYFY P G G + +S + L + R K V IE+ +
Sbjct: 132 SVCCHIHGFAPYFYTPAPPGFGAEHLSELQRELNAAISRDQRGGKELSGPAVLAIELCSR 191
Query: 189 RSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFMTYESNVLFALRFM 248
S+ Y PFL+I +ALP ++A R +L++GI++ GLG SF YE+NV F +RFM
Sbjct: 192 ESMFGYHGHGPSPFLRITLALPRLMAPARRLLEQGIRVPGLGTPSFAPYEANVDFEIRFM 251
Query: 249 IDCNIVGGNWIEVPVGKY-RKTAKTLSYCQLEFDCLYSDIISRHPEGEFSKMAPFRILSF 307
+D +IVG NW+E+P GKY R+ K + CQLE D L+SD+IS PEG++ ++AP R+LSF
Sbjct: 252 VDADIVGCNWLELPAGKYVRRAEKKATLCQLEVDVLWSDVISHPPEGQWQRIAPLRVLSF 311
Query: 308 DIECAGRKGHFPEPTHDPVIQVANLVTLQGEKQPFIRNVMTLKSCAPIVGVDVMSFETER 367
DIECAGRKG FPEP DPVIQ+ +L GE +PF+R +TL+ CAPI+G V S+E E
Sbjct: 312 DIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTLRPCAPILGAKVQSYEREE 371
Query: 368 DVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
D+L AW FI +DPDV+ GYNI FDLPYLI +
Sbjct: 372 DLLQAWATFILAMDPDVITGYNIQNFDLPYLISR 405
>UNIPROTKB|P28340 [details] [associations]
symbol:POLD1 "DNA polymerase delta catalytic subunit"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0043137 "DNA replication,
removal of RNA primer" evidence=IBA] [GO:0043625 "delta DNA
polymerase complex" evidence=IBA] [GO:0045004 "DNA replication
proofreading" evidence=IBA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000731 "DNA
synthesis involved in DNA repair" evidence=IDA;IMP] [GO:0003677
"DNA binding" evidence=IDA] [GO:0000084 "S phase of mitotic cell
cycle" evidence=IDA;TAS] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IMP] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0006287 "base-excision repair, gap-filling" evidence=IDA]
[GO:0000109 "nucleotide-excision repair complex" evidence=IDA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IC;IMP;TAS] [GO:0009411 "response to UV" evidence=TAS]
[GO:0000278 "mitotic cell cycle" evidence=TAS] [GO:0000722
"telomere maintenance via recombination" evidence=TAS] [GO:0000723
"telomere maintenance" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=TAS] [GO:0006284 "base-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0032201
"telomere maintenance via semi-conservative replication"
evidence=TAS] Reactome:REACT_216 InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 EMBL:AY129569
GO:GO:0007346 GO:GO:0009411 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0003682
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0000722 GO:GO:0000731 Reactome:REACT_383 GO:GO:0006283
GO:GO:0043137 GO:GO:0003887 GO:GO:0032201 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616
OMA:MIEQTKQ GO:GO:0043625 EMBL:M80397 EMBL:M81735 EMBL:BC008800
IPI:IPI00002894 PIR:A41618 RefSeq:NP_001243778.1 RefSeq:NP_002682.2
UniGene:Hs.279413 ProteinModelPortal:P28340 SMR:P28340
IntAct:P28340 MINT:MINT-1414678 STRING:P28340 PhosphoSite:P28340
DMDM:50403732 PaxDb:P28340 PRIDE:P28340 DNASU:5424
Ensembl:ENST00000440232 GeneID:5424 KEGG:hsa:5424 UCSC:uc002psb.4
GeneCards:GC19P050889 H-InvDB:HIX0202825 HGNC:HGNC:9175
HPA:CAB004375 MIM:174761 neXtProt:NX_P28340 PharmGKB:PA33496
PhylomeDB:P28340 BindingDB:P28340 ChEMBL:CHEMBL2735 GenomeRNAi:5424
NextBio:20985 PMAP-CutDB:P28340 Bgee:P28340 CleanEx:HS_POLD1
Genevestigator:P28340 GermOnline:ENSG00000062822 GO:GO:0000109
Uniprot:P28340
Length = 1107
Score = 1918 (680.2 bits), Expect = 2.3e-280, Sum P(2) = 2.3e-280
Identities = 393/697 (56%), Positives = 498/697 (71%)
Query: 329 VANLVTLQGEKQPFIRNVMTLKSCAPIVGVDVMSFET-ERD---VLLAWR---DFIREVD 381
++ TL+ + PF+ V L C+ I S +T RD V + R D ++ +
Sbjct: 407 ISRAQTLKVQTFPFLGRVAGL--CSNIRDSSFQSKQTGRRDTKVVSMVGRVQMDMLQVLL 464
Query: 382 PDVMI-GYNICKFDLPYLIE-KEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLD 439
+ + Y + +L E KEDV HSII+DLQNGN +TRRRLAVYCLKDAYLP RLL+
Sbjct: 465 REYKLRSYTLNAVSFHFLGEQKEDVQHSIITDLQNGNDQTRRRLAVYCLKDAYLPLRLLE 524
Query: 440 KLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYE 499
+LM + N VEMARVTGVP+S+LLSRGQ +KV+SQLLR+A + L++P VK G E Y
Sbjct: 525 RLMVLVNAVEMARVTGVPLSYLLSRGQQVKVVSQLLRQAMHEGLLMPVVKSEGGED--YT 582
Query: 500 GATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLVTPEDARKLNLPPECVNKTPS 559
GATV+E G+Y+ PIATLDF+SLYPSIMMA+NLCY+TL+ P A+KL L + +TP+
Sbjct: 583 GATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGTAQKLGLTEDQFIRTPT 642
Query: 560 GETFVKSNLQKGXXXXXXXXXXXXXXXXXXXXXXXXXPLEKAVLDGRQLALKISANSVYG 619
G+ FVK++++KG PL + VLDGRQLALK+SANSVYG
Sbjct: 643 GDEFVKTSVRKGLLPQILENLLSARKRAKAELAKETDPLRRQVLDGRQLALKVSANSVYG 702
Query: 620 FTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQ 679
FTGA VG+LPC+EIS SVT +GRQMIE TK+LVE K+T GY +A+V+YGDTDSVM +
Sbjct: 703 FTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYSTSAKVVYGDTDSVMCR 762
Query: 680 FGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTN-PEKFD 738
FGV +V AM LGREAAD++SG F PI+LEFEKVY+PYLLISKKRYAGL +++ P+ D
Sbjct: 763 FGVSSVAEAMALGREAADWVSGHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSSRPDAHD 822
Query: 739 KMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLV 798
+MD KG+E VRRDNC LV NLVT L ++L+DRD GAV + + ISDLL NR+D+S LV
Sbjct: 823 RMDCKGLEAVRRDNCPLVANLVTASLRRLLIDRDPEGAVAHAQDVISDLLCNRIDISQLV 882
Query: 799 ITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDP 858
ITK LT+ DY K AHVELAERMRKRD +AP++GDRVPYVII AAKG AY +SEDP
Sbjct: 883 ITKELTRAASDYAGKQAHVELAERMRKRDPGSAPSLGDRVPYVIISAAKGVAAYMKSEDP 942
Query: 859 IYVLENNIPIDTHYYLENQISKPLLRIFEPILKNASKE--LLSGDHTRSISISTPSNSGI 916
++VLE+++PIDT YYLE Q++KPLLRIFEPIL E LL GDHTR ++ T G+
Sbjct: 943 LFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILGEGRAEAVLLRGDHTRCKTVLTGKVGGL 1002
Query: 917 MKFAKRQLSCIGCKALISN-GTLCSHCKGREAELYCKTVSQVQELEVLFGRLWTQCQECQ 975
+ FAKR+ CIGC+ ++S+ G +C C+ RE+ELY K VS + LE F RLWTQCQ CQ
Sbjct: 1003 LAFAKRRNCCIGCRTVLSHQGAVCEFCQPRESELYQKEVSHLNALEERFSRLWTQCQRCQ 1062
Query: 976 GSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKLQLDRW 1012
GSLH+DV+CTSRDCPIFY RKK +KD+ + + L R+
Sbjct: 1063 GSLHEDVICTSRDCPIFYMRKKVRKDLEDQEQLLRRF 1099
Score = 800 (286.7 bits), Expect = 2.3e-280, Sum P(2) = 2.3e-280
Identities = 162/356 (45%), Positives = 220/356 (61%)
Query: 52 EDEESLILRDIEQRQDFASRL-AKWARPPLSSGYVSQCQSIMFQQLDIDYVIGDSNREL- 109
E+E +L + Q S + +W RP Q + ++FQQL+ID+ +G +
Sbjct: 55 EEELQSVLEGVADGQVPPSAIDPRWLRPT-PPALDPQTEPLIFQQLEIDHYVGPAQPVPG 113
Query: 110 -LPLSSGSAAIIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMR 168
P S GS ++R FGVT EG SVCC +HGF PYFY P G GP+ + + L +
Sbjct: 114 GPPPSRGSVPVLRAFGVTDEGFSVCCHIHGFAPYFYTPAPPGFGPEHMGDLQRELNLAIS 173
Query: 169 EANRNSK--VPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQL 226
+R + V +E+ + S+ Y PFL+I VALP +VA R +L++GI++
Sbjct: 174 RDSRGGRELTGPAVLAVELCSRESMFGYHGHGPSPFLRITVALPRLVAPARRLLEQGIRV 233
Query: 227 DGLGMKSFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAKT-LSYCQLEFDCLYS 285
GLG SF YE+NV F +RFM+D +IVG NW+E+P GKY K + CQLE D L+S
Sbjct: 234 AGLGTPSFAPYEANVDFEIRFMVDTDIVGCNWLELPAGKYALRLKEKATQCQLEADVLWS 293
Query: 286 DIISRHPEGEFSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQVANLVTLQGEKQPFIRN 345
D++S PEG + ++AP R+LSFDIECAGRKG FPEP DPVIQ+ +L GE +PF+R
Sbjct: 294 DVVSHPPEGPWQRIAPLRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRL 353
Query: 346 VMTLKSCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
+TL+ CAPI+G V S+E E D+L AW FIR +DPDV+ GYNI FDLPYLI +
Sbjct: 354 ALTLRPCAPILGAKVQSYEKEEDLLQAWSTFIRIMDPDVITGYNIQNFDLPYLISR 409
>MGI|MGI:97741 [details] [associations]
symbol:Pold1 "polymerase (DNA directed), delta 1, catalytic
subunit" species:10090 "Mus musculus" [GO:0000084 "S phase of
mitotic cell cycle" evidence=ISO;IBA] [GO:0000109
"nucleotide-excision repair complex" evidence=ISO] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISO;IBA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IBA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0006260 "DNA replication"
evidence=ISO] [GO:0006261 "DNA-dependent DNA replication"
evidence=ISO] [GO:0006287 "base-excision repair, gap-filling"
evidence=ISO;IMP] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=ISO;IBA] [GO:0007346 "regulation of mitotic cell
cycle" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IMP] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0043137 "DNA
replication, removal of RNA primer" evidence=IBA] [GO:0043625
"delta DNA polymerase complex" evidence=IBA] [GO:0045004 "DNA
replication proofreading" evidence=IMP] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 MGI:MGI:97741 GO:GO:0007346
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0003682
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0000731 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260
GeneTree:ENSGT00560000077365 HOGENOM:HOG000036616 OMA:MIEQTKQ
GO:GO:0043625 GO:GO:0000109 EMBL:Z21848 EMBL:AF024570 EMBL:AK167569
EMBL:AK168967 EMBL:AK169040 IPI:IPI00323143 PIR:S40243
RefSeq:NP_035261.3 UniGene:Mm.16549 ProteinModelPortal:P52431
SMR:P52431 IntAct:P52431 STRING:P52431 PhosphoSite:P52431
PaxDb:P52431 PRIDE:P52431 Ensembl:ENSMUST00000049343 GeneID:18971
KEGG:mmu:18971 InParanoid:Q3TFX6 OrthoDB:EOG4KWJS2 ChiTaRS:POLD1
NextBio:295320 PMAP-CutDB:P52431 Bgee:P52431 Genevestigator:P52431
GermOnline:ENSMUSG00000038644 Uniprot:P52431
Length = 1105
Score = 1915 (679.2 bits), Expect = 2.3e-280, Sum P(2) = 2.3e-280
Identities = 377/617 (61%), Positives = 466/617 (75%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+KEDV HSII+DLQNGN +TRRRLAVYCLKDA+LP RLL++LM + N VEMARVTGVP+
Sbjct: 483 QKEDVQHSIITDLQNGNEQTRRRLAVYCLKDAFLPLRLLERLMVLVNNVEMARVTGVPLG 542
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLD 519
+LL+RGQ +KV+SQLLR+A ++ L++P VK GSE Y GATV+E G+Y+ PIATLD
Sbjct: 543 YLLTRGQQVKVVSQLLRQAMRQGLLMPVVKTEGSED--YTGATVIEPLKGYYDVPIATLD 600
Query: 520 FASLYPSIMMAYNLCYSTLVTPEDARKLNLPPECVNKTPSGETFVKSNLQKGXXXXXXXX 579
F+SLYPSIMMA+NLCY+TL+ P A+KL L P+ KTP+G+ FVKS+++KG
Sbjct: 601 FSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEFIKTPTGDEFVKSSVRKGLLPQILEN 660
Query: 580 XXXXXXXXXXXXXXXXXPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTS 639
PL + VLDGRQLALK+SANSVYGFTGA VG+LPC+EIS SVT
Sbjct: 661 LLSARKRAKAELAQETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTG 720
Query: 640 YGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYI 699
+GRQMIE TK+LVE K+T GY+ NA+V+YGDTDSVM +FGV +V AM LGREAA+++
Sbjct: 721 FGRQMIEKTKQLVESKYTVENGYDANAKVVYGDTDSVMCRFGVSSVAEAMSLGREAANWV 780
Query: 700 SGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTN-PEKFDKMDTKGIETVRRDNCLLVKN 758
S F PI+LEFEKVY+PYLLISKKRYAGL +++ + DKMD KG+E VRRDNC LV N
Sbjct: 781 SSHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSSRSDAHDKMDCKGLEAVRRDNCPLVAN 840
Query: 759 LVTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVE 818
LVT L +ILVDRD GAV + K ISDLL NR+D+S LVITK LT+ DY K AHVE
Sbjct: 841 LVTSSLRRILVDRDPDGAVAHAKDVISDLLCNRIDISQLVITKELTRAAADYAGKQAHVE 900
Query: 819 LAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQI 878
LAERMRKRD +AP++GDRVPYVII AAKG AY +SEDP++VLE+++PIDT YYLE Q+
Sbjct: 901 LAERMRKRDPGSAPSLGDRVPYVIIGAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQL 960
Query: 879 SKPLLRIFEPILKNASKE--LLSGDHTRSISISTPSNSGIMKFAKRQLSCIGCKALISN- 935
+KPLLRIFEPIL E LL GDHTR ++ T G++ F KR+ CIGC+++I +
Sbjct: 961 AKPLLRIFEPILGEGRAESVLLRGDHTRCKTVLTSKVGGLLAFTKRRNCCIGCRSVIDHQ 1020
Query: 936 GTLCSHCKGREAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRR 995
G +C C+ RE+ELY K VS + LE F RLWTQCQ CQGSLH+DV+CTSRDCPIFY R
Sbjct: 1021 GAVCKFCQPRESELYQKEVSHLNALEERFSRLWTQCQRCQGSLHEDVICTSRDCPIFYMR 1080
Query: 996 KKAQKDMAEAKLQLDRW 1012
KK +KD+ + + L R+
Sbjct: 1081 KKVRKDLEDQERLLQRF 1097
Score = 803 (287.7 bits), Expect = 2.3e-280, Sum P(2) = 2.3e-280
Identities = 160/334 (47%), Positives = 214/334 (64%)
Query: 74 KWARPPLSSGYVSQCQSIMFQQLDIDYVIGDSN---RELLPLSSGSAAIIRIFGVTREGH 130
+W RP L + S + ++FQQL+ID+ +G + LP S S I+R FGVT EG
Sbjct: 76 RWRRPTLRALDPST-EPLIFQQLEIDHYVGSAPPLPEGPLP-SRNSVPILRAFGVTDEGF 133
Query: 131 SVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANRNSKVPQ--FVRHIEMVQK 188
SVCC + GF PYFY P G G + +S Q L + R K V IE+ +
Sbjct: 134 SVCCHIQGFAPYFYTPAPPGFGAEHLSELQQELNAAISRDQRGGKELSGPAVLAIELCSR 193
Query: 189 RSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFMTYESNVLFALRFM 248
S+ Y PFL+I +ALP ++A R +L++G+++ GLG SF YE+NV F +RFM
Sbjct: 194 ESMFGYHGHGPSPFLRITLALPRLMAPARRLLEQGVRVPGLGTPSFAPYEANVDFEIRFM 253
Query: 249 IDCNIVGGNWIEVPVGKY-RKTAKTLSYCQLEFDCLYSDIISRHPEGEFSKMAPFRILSF 307
+D +IVG NW+E+P GKY R+ K + CQLE D L+SD+IS PEG++ ++AP R+LSF
Sbjct: 254 VDADIVGCNWLELPAGKYVRRAEKKATLCQLEVDVLWSDVISHPPEGQWQRIAPLRVLSF 313
Query: 308 DIECAGRKGHFPEPTHDPVIQVANLVTLQGEKQPFIRNVMTLKSCAPIVGVDVMSFETER 367
DIECAGRKG FPEP DPVIQ+ +L GE +PF+R +TL+ CAPI+G V S+E E
Sbjct: 314 DIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTLRPCAPILGAKVQSYEREE 373
Query: 368 DVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
D+L AW DFI +DPDV+ GYNI FDLPYLI +
Sbjct: 374 DLLQAWADFILAMDPDVITGYNIQNFDLPYLISR 407
>ZFIN|ZDB-GENE-060429-1 [details] [associations]
symbol:pold1 "polymerase (DNA directed), delta 1,
catalytic subunit" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IBA] [GO:0006260 "DNA replication" evidence=IEA;IMP]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IBA]
[GO:0045004 "DNA replication proofreading" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0006287
"base-excision repair, gap-filling" evidence=IBA] [GO:0000084 "S
phase of mitotic cell cycle" evidence=IBA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 ZFIN:ZDB-GENE-060429-1
GO:GO:0007346 GO:GO:0000166 GO:GO:0003677 SUPFAM:SSF53098
GO:GO:0000084 GO:GO:0008408 GO:GO:0043137 GO:GO:0003887
GO:GO:0006297 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260 GO:GO:0043625
EMBL:AY883095 IPI:IPI00631610 RefSeq:NP_001034899.1
UniGene:Dr.49022 ProteinModelPortal:Q2KNE0 STRING:Q2KNE0
GeneID:556456 KEGG:dre:556456 InParanoid:Q2KNE0 NextBio:20881495
ArrayExpress:Q2KNE0 Uniprot:Q2KNE0
Length = 1105
Score = 1981 (702.4 bits), Expect = 6.2e-280, Sum P(2) = 6.2e-280
Identities = 389/619 (62%), Positives = 470/619 (75%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+KEDV HSII+DLQNGN +TRRRLAVYCLKDAYLP RLL KLM + NY+EMARVTGVP++
Sbjct: 489 QKEDVQHSIITDLQNGNEQTRRRLAVYCLKDAYLPLRLLQKLMCVINYMEMARVTGVPLT 548
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLD 519
+LLSRGQ IKV+SQLLR+A +++LV+P VK G E Y GATV+E G+Y PIATLD
Sbjct: 549 YLLSRGQQIKVVSQLLRQAMKQDLVMPVVKTEGGED--YTGATVIEPEKGYYSVPIATLD 606
Query: 520 FASLYPSIMMAYNLCYSTLVTPEDARKLNLPPECVNKTPSGETFVKSNLQKGXXXXXXXX 579
F+SLYPSIMMA+NLCY+TL+ KL L P+ KTP+G+ FVKS+++KG
Sbjct: 607 FSSLYPSIMMAHNLCYTTLLQKSQIEKLGLGPDDFIKTPTGDLFVKSSVRKGLLPEILEN 666
Query: 580 XXXXXXXXXXXXXXXXXPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTS 639
P +K VLDGRQLALKISANSVYGFTGA VG+LPC+EIS SVT
Sbjct: 667 LLSARKRAKAELKKETDPFKKQVLDGRQLALKISANSVYGFTGAQVGKLPCLEISQSVTG 726
Query: 640 YGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYI 699
+GRQMIE TK+LVE ++T GY+ +A+VIYGDTDSVMV+ GV TV+ AM G+EAA+++
Sbjct: 727 FGRQMIEQTKQLVESRYTLDNGYQADAKVIYGDTDSVMVKLGVATVQEAMNQGKEAAEWV 786
Query: 700 SGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTNP-EKFDKMDTKGIETVRRDNCLLVKN 758
S F+ PIKLEFEKVYYPYLLI+KKRYAGLY+++ E DKMD KGIETVRRDNC LV N
Sbjct: 787 SSHFVPPIKLEFEKVYYPYLLINKKRYAGLYFSSSAEHHDKMDCKGIETVRRDNCPLVAN 846
Query: 759 LVTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVE 818
L+ CL IL+DRD GAV + K ISDLL NR+D+S LVITK LT+T +Y K AHVE
Sbjct: 847 LINTCLQNILIDRDPDGAVTHAKEVISDLLCNRIDISQLVITKELTRTAQEYAGKQAHVE 906
Query: 819 LAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQI 878
LAERMRKRDA +APN+GDRVPYVIIKAAKG AY +SEDPIYVLENNIPIDT YYLE Q+
Sbjct: 907 LAERMRKRDAGSAPNLGDRVPYVIIKAAKGVAAYMKSEDPIYVLENNIPIDTQYYLEQQL 966
Query: 879 SKPLLRIFEPILKNASKE--LLSGDHTRSISISTPSNSGIMKFAKRQLSCIGCKALISNG 936
SKPLLRIFEPIL + E LL GDHTR ++ T G+M FA+++ +CIGC+A++
Sbjct: 967 SKPLLRIFEPILGESKAESVLLKGDHTRCKTVLTSRVGGLMAFAQKRSTCIGCRAVLKTD 1026
Query: 937 T-LCSHCKGREAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRR 995
+C CK RE+ELY K ++ + LE F RLWTQCQ CQGSLH+DVLCTSRDCPIFY R
Sbjct: 1027 VAVCDFCKKRESELYQKEIAHLSTLEEKFSRLWTQCQRCQGSLHEDVLCTSRDCPIFYMR 1086
Query: 996 KKAQKDMAEAKLQLDRWNF 1014
KK QKD+ + + + R+ +
Sbjct: 1087 KKVQKDLDDQEKLVSRFGW 1105
Score = 733 (263.1 bits), Expect = 6.2e-280, Sum P(2) = 6.2e-280
Identities = 143/342 (41%), Positives = 215/342 (62%)
Query: 74 KWARPPLSSGYVSQCQSIMFQQLDIDYVIGDSNRELLPLSSGSAAIIRIFGVTREGHSVC 133
+W RP S + + +++FQQ+D+DY +G + + G I+R+FGVT G+SVC
Sbjct: 73 RWKRPHASPLH-PKSDTLIFQQIDLDYYLGAAVAGMPGQVQGKVPIVRMFGVTDNGNSVC 131
Query: 134 CKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANRNSK--VPQFVRHIEMVQKRSI 191
C +HGF PYFY+ P G ++ F + L + + R++K + V +++ +K S+
Sbjct: 132 CHIHGFAPYFYVPAPNGFTNAHLAGFQRELNSVVLKDMRSNKDNIAVTVLAVDITKKESM 191
Query: 192 MYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFMTYESNVLFALRFMIDC 251
Y K FL+I +A+P +VA + +L++G + +S+ +E+N+ F +RFM+D
Sbjct: 192 YNYHGNKPHDFLRITMAMPRLVAPAKRLLEQGFKFANFATQSYQAFEANIDFEIRFMVDS 251
Query: 252 NIVGGNWIEVPVGKY-----RKTAKT-------LSYCQLEFDCLYSDIISRHPEGEFSKM 299
N+VG WIE+P GKY R+ +T +S CQ E D + +IS EGE+ ++
Sbjct: 252 NVVGCCWIELPKGKYQLREERREGQTDSKYPGKVSLCQYEVDVAWDSLISHPAEGEWQRI 311
Query: 300 APFRILSFDIECAGRKGHFPEPTHDPVIQVANLVTLQGEKQPFIRNVMTLKSCAPIVGVD 359
AP R+LSFDIECAGRKG FPEP DPVIQ+A++V QGEK+PFIR V TL+SCA IVG
Sbjct: 312 APLRVLSFDIECAGRKGVFPEPEVDPVIQIASMVQRQGEKEPFIRTVFTLQSCASIVGSQ 371
Query: 360 VMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
++ F E+ +L +W +F+R VDPD++ GYNI FDLPYL+ +
Sbjct: 372 ILCFTQEKLMLQSWAEFMRTVDPDIITGYNIQNFDLPYLLNR 413
>UNIPROTKB|P28339 [details] [associations]
symbol:POLD1 "DNA polymerase delta catalytic subunit"
species:9913 "Bos taurus" [GO:0006260 "DNA replication"
evidence=TAS] [GO:0005634 "nucleus" evidence=IC] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=TAS] [GO:0051539 "4
iron, 4 sulfur cluster binding" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005634
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0051539 GO:GO:0004527 GO:GO:0090305 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 Gene3D:3.90.1600.10 InterPro:IPR023211
TIGRFAMs:TIGR00592 EMBL:M80395 IPI:IPI00706072 PIR:A39299
RefSeq:NP_776852.1 UniGene:Bt.4749 ProteinModelPortal:P28339
IntAct:P28339 STRING:P28339 PRIDE:P28339 GeneID:281990
KEGG:bta:281990 CTD:5424 HOVERGEN:HBG051395 KO:K02327
BindingDB:P28339 ChEMBL:CHEMBL4057 NextBio:20805858
InterPro:IPR025687 Pfam:PF14260 Uniprot:P28339
Length = 1106
Score = 1903 (674.9 bits), Expect = 1.6e-279, Sum P(2) = 1.6e-279
Identities = 373/617 (60%), Positives = 466/617 (75%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+KEDV HSII+DLQNGN +TRRRLAVYCLKDA+LP RLL++LM + N +EMARVTGVP+
Sbjct: 484 QKEDVQHSIITDLQNGNDQTRRRLAVYCLKDAFLPLRLLERLMVLVNAMEMARVTGVPLG 543
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLD 519
+LLSRGQ +KV+SQLLR+A ++ L++P VK G E Y GATV+E G+Y+ PIATLD
Sbjct: 544 YLLSRGQQVKVVSQLLRQAMRQGLLMPVVKTEGGED--YTGATVIEPLKGYYDVPIATLD 601
Query: 520 FASLYPSIMMAYNLCYSTLVTPEDARKLNLPPECVNKTPSGETFVKSNLQKGXXXXXXXX 579
F+SLYPSIMMA+NLCY+TL+ P A+KL L + KTP+G+ FVK++++KG
Sbjct: 602 FSSLYPSIMMAHNLCYTTLLRPGAAQKLGLTEDQFIKTPTGDEFVKASVRKGLLPQILEN 661
Query: 580 XXXXXXXXXXXXXXXXXPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTS 639
PL + VLDGRQLALK+SANSVYGFTGA VG+LPC+EIS SVT
Sbjct: 662 LLSARKRAKAELAKETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGRLPCLEISQSVTG 721
Query: 640 YGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYI 699
+GRQMIE TK+LVE K+T GY +A+V+YGDTDSVM +FGV +V AM LGREAAD++
Sbjct: 722 FGRQMIEKTKQLVETKYTVENGYSTSAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWV 781
Query: 700 SGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTN-PEKFDKMDTKGIETVRRDNCLLVKN 758
SG F PI+LEFEKVY+PYLLISKKRYAGL +++ P+ D+MD KG+E VRRDNC LV N
Sbjct: 782 SGHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSSRPDAHDRMDCKGLEAVRRDNCPLVAN 841
Query: 759 LVTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVE 818
LVT L ++L+DRD GAV + + ISDLL NR+D+S LVITK LT+ DY K AHVE
Sbjct: 842 LVTASLRRLLIDRDPSGAVAHAQDVISDLLCNRIDISQLVITKELTRAAADYAGKQAHVE 901
Query: 819 LAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQI 878
LAERMRKRD +AP++GDRVPYVII AAKG AY +SEDP++VLE+++PIDT YYLE Q+
Sbjct: 902 LAERMRKRDPGSAPSLGDRVPYVIISAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQL 961
Query: 879 SKPLLRIFEPILKNASKE--LLSGDHTRSISISTPSNSGIMKFAKRQLSCIGCKALISN- 935
+KPLLRIFEPIL E LL GDHTR ++ T G++ FAKR+ CIGC+ ++S+
Sbjct: 962 AKPLLRIFEPILGEGRAEAVLLRGDHTRCKTVLTGKVGGLLAFAKRRNCCIGCRTVLSHQ 1021
Query: 936 GTLCSHCKGREAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRR 995
G +C C+ RE+ELY K VS + LE F RLWTQCQ CQGSLH+DV+CTSRDCPIFY R
Sbjct: 1022 GAVCKFCQPRESELYQKEVSHLSALEERFSRLWTQCQRCQGSLHEDVICTSRDCPIFYMR 1081
Query: 996 KKAQKDMAEAKLQLDRW 1012
KK +KD+ + + L R+
Sbjct: 1082 KKVRKDLEDQERLLRRF 1098
Score = 807 (289.1 bits), Expect = 1.6e-279, Sum P(2) = 1.6e-279
Identities = 163/336 (48%), Positives = 214/336 (63%)
Query: 73 AKWARPPLSSGYVSQCQSIMFQQLDIDYVIGDSNRELL---PLSSGSAAIIRIFGVTREG 129
A+W RP Q + ++FQQL+ID+ + + R L P S S I+R FGVT EG
Sbjct: 76 ARWLRPA-PPALDPQMEPLIFQQLEIDHYVAPA-RPLPGAPPPSQDSVPILRAFGVTNEG 133
Query: 130 HSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANRNSK--VPQFVRHIEMVQ 187
SVCC +HGF PYFY P G GP+ +S + L + R K V +E+
Sbjct: 134 VSVCCHIHGFAPYFYTPAPPGFGPEHLSELQRELSAAISRDQRGGKELTGPAVLAVELCS 193
Query: 188 KRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFMTYESNVLFALRF 247
+ S+ Y PFL+I +ALP ++A R +L++GI+L GLG SF YE+NV F +RF
Sbjct: 194 RESMFGYHGHGPSPFLRITLALPRLMAPARRLLEQGIRLAGLGTPSFAPYEANVDFEIRF 253
Query: 248 MIDCNIVGGNWIEVPVGKY--RKTAKTLSYCQLEFDCLYSDIISRHPEGEFSKMAPFRIL 305
M+D +IVG NW+E+P GKY R K + CQLE D L+SD+IS PEGE+ ++AP R+L
Sbjct: 254 MVDTDIVGCNWLELPAGKYILRPEGKA-TLCQLEADVLWSDVISHPPEGEWQRIAPLRVL 312
Query: 306 SFDIECAGRKGHFPEPTHDPVIQVANLVTLQGEKQPFIRNVMTLKSCAPIVGVDVMSFET 365
SFDIECAGRKG FPEP DPVIQ+ +L GE +PF+R +TL+ CAPI+G V S+E
Sbjct: 313 SFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTLRPCAPILGAKVQSYER 372
Query: 366 ERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
E D+L AW FIR +DPDV+ GYNI FDLPYLI +
Sbjct: 373 EEDLLQAWSTFIRIMDPDVITGYNIQNFDLPYLISR 408
>UNIPROTKB|F1RH32 [details] [associations]
symbol:POLD1 "DNA polymerase" species:9823 "Sus scrofa"
[GO:0045004 "DNA replication proofreading" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IEA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=IEA] [GO:0000109 "nucleotide-excision repair
complex" evidence=IEA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0003682
SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408 GO:GO:0000731
GO:GO:0003887 GO:GO:0006297 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424
KO:K02327 InterPro:IPR025687 Pfam:PF14260
GeneTree:ENSGT00560000077365 OMA:MIEQTKQ GO:GO:0000109
EMBL:FP102476 RefSeq:XP_003127412.2 Ensembl:ENSSSCT00000003572
GeneID:100525752 KEGG:ssc:100525752 Uniprot:F1RH32
Length = 1107
Score = 1897 (672.8 bits), Expect = 1.3e-277, Sum P(2) = 1.3e-277
Identities = 372/617 (60%), Positives = 465/617 (75%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+KEDV HSII+DLQNGN +TRRRLAVYCLKDA+LP RLL++LM + N +EMARVTGVP+
Sbjct: 485 QKEDVQHSIITDLQNGNDQTRRRLAVYCLKDAFLPLRLLERLMVLVNAMEMARVTGVPLG 544
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLD 519
+LLSRGQ +KV+SQLLR+A ++ L++P VK G E Y GATV+E G+Y+ PI TLD
Sbjct: 545 YLLSRGQQVKVVSQLLRQAMREGLLMPVVKTEGGED--YTGATVIEPLKGYYDVPITTLD 602
Query: 520 FASLYPSIMMAYNLCYSTLVTPEDARKLNLPPECVNKTPSGETFVKSNLQKGXXXXXXXX 579
F+SLYPSIMMA+NLCY+TL+ P A+KL L + KTP+G+ FVK++++KG
Sbjct: 603 FSSLYPSIMMAHNLCYTTLLRPGAAQKLGLTADQFIKTPTGDEFVKTSVRKGLLPQILEN 662
Query: 580 XXXXXXXXXXXXXXXXXPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTS 639
PL + VLDGRQLALK+SANSVYGFTGA VG+LPC+EIS SVT
Sbjct: 663 LLSARKRAKAELAKETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTG 722
Query: 640 YGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYI 699
+GRQMIE TK+LVE K+T GY +A+V+YGDTDSVM +FGV +V AM LGREAAD++
Sbjct: 723 FGRQMIEKTKQLVESKYTVENGYGTSAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWV 782
Query: 700 SGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTN-PEKFDKMDTKGIETVRRDNCLLVKN 758
SG F PI+LEFEKVY+PYLLISKKRYAGL +++ P+ D+MD KG+E VRRDNC LV N
Sbjct: 783 SGHFPAPIRLEFEKVYFPYLLISKKRYAGLLFSSRPDTHDRMDCKGLEAVRRDNCPLVAN 842
Query: 759 LVTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVE 818
LVT L ++L+DRD GAV + + ISDLL NR+D+S LVITK LT+ DY K AHVE
Sbjct: 843 LVTASLRRLLIDRDPAGAVAHAQDVISDLLCNRIDISQLVITKELTRAAADYAGKQAHVE 902
Query: 819 LAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQI 878
LAERMRKRD +AP++GDRVPYVII AAKG AY +SEDP++VLE+++PIDT YYLE Q+
Sbjct: 903 LAERMRKRDPGSAPSLGDRVPYVIISAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQL 962
Query: 879 SKPLLRIFEPILKNASKE--LLSGDHTRSISISTPSNSGIMKFAKRQLSCIGCKALISN- 935
+KPLLRIFEPIL E LL GDHTR ++ T G++ FAKR+ CIGC+ ++S+
Sbjct: 963 AKPLLRIFEPILGEGRAEAVLLRGDHTRCKTVLTGKVGGLLAFAKRRNCCIGCRTVLSHQ 1022
Query: 936 GTLCSHCKGREAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRR 995
G +C C+ RE+ELY K VS + LE F RLWTQCQ CQGSLH+DV+CTSRDCPIFY R
Sbjct: 1023 GAVCKFCQPRESELYQKEVSHLNALEERFSRLWTQCQRCQGSLHEDVICTSRDCPIFYMR 1082
Query: 996 KKAQKDMAEAKLQLDRW 1012
KK +KD+ + + L R+
Sbjct: 1083 KKVRKDLEDQEQLLRRF 1099
Score = 795 (284.9 bits), Expect = 1.3e-277, Sum P(2) = 1.3e-277
Identities = 157/335 (46%), Positives = 215/335 (64%)
Query: 74 KWARPPLSSGYVSQCQSIMFQQLDIDYVIGDSNRELL---PLSSGSAAIIRIFGVTREGH 130
+W RP + Q + ++FQQL+ID+ +G + R L P S S ++R FGVT +G
Sbjct: 78 RWLRPTPPT-LDPQTEPLIFQQLEIDHYVGPA-RPLPGAPPPSQSSVPVLRAFGVTDDGV 135
Query: 131 SVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANRNSK--VPQFVRHIEMVQK 188
SVCC +HGF PYFY P G GP+ +S + L + R K V +E+ +
Sbjct: 136 SVCCHIHGFAPYFYTPAPPGFGPEHLSDLQRELNAAISRDQRGGKELTGPAVLAVELCSR 195
Query: 189 RSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFMTYESNVLFALRFM 248
S+ Y PFL+I +ALP ++A R +L++GI++ GLG SF YE+NV F +RFM
Sbjct: 196 ESMFGYHGHGPSPFLRITLALPRLMAPARRLLEQGIRVAGLGTPSFAPYEANVDFEIRFM 255
Query: 249 IDCNIVGGNWIEVPVGKY--RKTAKTLSYCQLEFDCLYSDIISRHPEGEFSKMAPFRILS 306
+D ++VG NW+E+P GKY R K + CQLE D L+SD++S PEG + ++AP R+LS
Sbjct: 256 VDADVVGCNWLELPAGKYLLRPEGKA-TLCQLEADVLWSDVVSHPPEGPWQRIAPLRVLS 314
Query: 307 FDIECAGRKGHFPEPTHDPVIQVANLVTLQGEKQPFIRNVMTLKSCAPIVGVDVMSFETE 366
FDIECAGRKG FPEP DPVIQ+ +L GE +PF+R +TL+ CAPI+G V S+E E
Sbjct: 315 FDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTLRPCAPILGAKVQSYERE 374
Query: 367 RDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
D+L AW +FIR +DPDV+ GYNI FDLPYLI +
Sbjct: 375 EDLLQAWSNFIRVMDPDVITGYNIQNFDLPYLISR 409
>UNIPROTKB|E2R5W5 [details] [associations]
symbol:POLD1 "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0045004 "DNA replication proofreading"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IEA] [GO:0006287 "base-excision repair,
gap-filling" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000731
"DNA synthesis involved in DNA repair" evidence=IEA] [GO:0000109
"nucleotide-excision repair complex" evidence=IEA] [GO:0000084 "S
phase of mitotic cell cycle" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0000166
GO:GO:0003677 GO:GO:0003682 SUPFAM:SSF53098 GO:GO:0000084
GO:GO:0008408 GO:GO:0000731 GO:GO:0003887 GO:GO:0006297
GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 CTD:5424 KO:K02327 InterPro:IPR025687
Pfam:PF14260 GeneTree:ENSGT00560000077365 GO:GO:0000109
EMBL:AAEX03000791 RefSeq:XP_851285.1 Ensembl:ENSCAFT00000004726
GeneID:610047 KEGG:cfa:610047 Uniprot:E2R5W5
Length = 1107
Score = 1889 (670.0 bits), Expect = 1.7e-275, Sum P(2) = 1.7e-275
Identities = 372/617 (60%), Positives = 464/617 (75%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+KEDV HSII+DLQNGN +TRRRLAVYCLKDA+LP RLL++LM + N +EMARVTGVP+
Sbjct: 485 QKEDVQHSIITDLQNGNDQTRRRLAVYCLKDAFLPLRLLERLMVLVNAMEMARVTGVPLG 544
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLD 519
+LLSRGQ +KV+SQLLR+A ++ L++P VK G E Y GATV+E G+Y+ PIATLD
Sbjct: 545 YLLSRGQQVKVVSQLLRQAMREGLLMPVVKTEGGED--YTGATVIEPLKGYYDVPIATLD 602
Query: 520 FASLYPSIMMAYNLCYSTLVTPEDARKLNLPPECVNKTPSGETFVKSNLQKGXXXXXXXX 579
F+SLYPSIMMA+NLCY+TL+ P A+KL L + KTP+G+ FVK++++KG
Sbjct: 603 FSSLYPSIMMAHNLCYTTLLRPGAAQKLGLTKDQFIKTPTGDEFVKTSVRKGLLPQILEN 662
Query: 580 XXXXXXXXXXXXXXXXXPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTS 639
PL + VLDGRQLALK+SANSVYGFTGA VG+LPC+EIS SVT
Sbjct: 663 LLSARKRAKAELAKETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTG 722
Query: 640 YGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYI 699
+GRQMIE TK+LVE K+T GY NA+V+YGDTDSVM +FGV +V AM LGREAAD++
Sbjct: 723 FGRQMIEKTKQLVESKYTVENGYSANAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWV 782
Query: 700 SGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTN-PEKFDKMDTKGIETVRRDNCLLVKN 758
SG F PI+LEFEKVY+PYLLISKKRYAGL +++ P+ D+MD KG+E VRRDNC LV N
Sbjct: 783 SGHFPPPIRLEFEKVYFPYLLISKKRYAGLLFSSRPDAHDRMDCKGLEAVRRDNCPLVAN 842
Query: 759 LVTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVE 818
LVT L ++L+DRD GAV + + ISDLL NR+D+S LVITK LT+ DY K AHVE
Sbjct: 843 LVTASLRRLLIDRDPAGAVAHAQDVISDLLCNRIDISQLVITKELTRAAADYAGKQAHVE 902
Query: 819 LAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQI 878
LAERMRKRD +AP++GDRVPYVII AAKG AY +SEDP++VLE+++PIDT YYLE Q+
Sbjct: 903 LAERMRKRDPGSAPSLGDRVPYVIIGAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQL 962
Query: 879 SKPLLRIFEPILKNASKE--LLSGDHTRSISISTPSNSGIMKFAKRQLSCIGCKALISN- 935
+KPLLRIFEPIL E LL GDHTR ++ T G++ FAKR CIGC+ ++++
Sbjct: 963 AKPLLRIFEPILGEGRAEAVLLRGDHTRCKTVLTGKVGGLLAFAKRHSCCIGCRTVLNHQ 1022
Query: 936 GTLCSHCKGREAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRR 995
G +C C+ RE+ELY K VS + LE F RL TQCQ CQGSLH+DV+CTSRDCPIFY R
Sbjct: 1023 GAVCKFCQPRESELYQKEVSHLNALERRFSRLCTQCQRCQGSLHEDVICTSRDCPIFYMR 1082
Query: 996 KKAQKDMAEAKLQLDRW 1012
KK +KD+ + + L R+
Sbjct: 1083 KKVRKDLEDQEQLLRRF 1099
Score = 783 (280.7 bits), Expect = 1.7e-275, Sum P(2) = 1.7e-275
Identities = 166/365 (45%), Positives = 224/365 (61%)
Query: 52 EDEESLILRDIEQRQD--FASRL--AKWARP---PLSSGYVSQCQSIMFQQLDIDYVIGD 104
E EE L+ +E D F+ A+W RP PL Q + ++FQQL+ID+ +G
Sbjct: 52 EQEEELLQPPLEGAPDGQFSPTAIDARWLRPTPPPLDP----QKEPLIFQQLEIDHYVGP 107
Query: 105 SNRELLP----LSSGSAAIIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHFH 160
+ + LP S S I+R FGVT EG SVCC +HGF PYFY P G G + +
Sbjct: 108 A--QPLPGAPTPSRDSVPILRAFGVTDEGVSVCCHIHGFAPYFYTPAPSGFGSEHLGDLQ 165
Query: 161 QILEGRMREANRNSK--VPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRG 218
+ L + R K V +E+ + S+ Y PFL+I +ALP +VA R
Sbjct: 166 RELNAAISRDQRGGKELTGPAVLSVELCSRESMFGYHGHGPSPFLRITLALPRLVAPARR 225
Query: 219 ILDRGIQLDGLGMKSFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKY--RKTAKTLSYC 276
+L++GI++ GLG SF YE+NV F +RFM+D +IVG NW+E+P KY R K + C
Sbjct: 226 LLEQGIRVAGLGTPSFAPYEANVDFEIRFMVDTDIVGCNWLELPAEKYILRPQGKA-TLC 284
Query: 277 QLEFDCLYSDIISRHPEGEFSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQVANLVTLQ 336
QLE D L+SD++S PEG++ ++AP R+LSFDIECAGRKG FPEP DPVIQ+ +L
Sbjct: 285 QLEADVLWSDVVSHPPEGQWQRIAPLRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRW 344
Query: 337 GEKQPFIRNVMTLKSCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLP 396
GE +PF+R +TL+ CAPI+G V S+E E ++L AW FIR +DPDV+ GYNI FDLP
Sbjct: 345 GEPEPFLRLALTLRPCAPILGAKVQSYEREEELLQAWSTFIRTMDPDVITGYNIQNFDLP 404
Query: 397 YLIEK 401
YLI +
Sbjct: 405 YLISR 409
>POMBASE|SPBC336.04 [details] [associations]
symbol:cdc6 "DNA polymerase delta catalytic subunit Cdc6"
species:4896 "Schizosaccharomyces pombe" [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=TAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008408 "3'-5' exonuclease
activity" evidence=IC] [GO:0010972 "negative regulation of G2/M
transition of mitotic cell cycle" evidence=IMP] [GO:0043137 "DNA
replication, removal of RNA primer" evidence=TAS] [GO:0043596
"nuclear replication fork" evidence=IC] [GO:0043625 "delta DNA
polymerase complex" evidence=TAS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 PomBase:SPBC336.04 GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0000731
GO:GO:0043137 GO:GO:0010972 GO:GO:0003887 eggNOG:COG0417
Gene3D:3.90.1600.10 InterPro:IPR023211 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616 OMA:MIEQTKQ
GO:GO:0043625 EMBL:X59278 EMBL:L07734 EMBL:AB027796 PIR:S19661
PIR:T40242 PIR:T43266 RefSeq:NP_596124.1 ProteinModelPortal:P30316
IntAct:P30316 STRING:P30316 EnsemblFungi:SPBC336.04.1
GeneID:2540255 KEGG:spo:SPBC336.04 OrthoDB:EOG4B01XB
NextBio:20801385 Uniprot:P30316
Length = 1086
Score = 1958 (694.3 bits), Expect = 2.9e-271, Sum P(2) = 2.9e-271
Identities = 384/617 (62%), Positives = 466/617 (75%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+KEDVH+SII+DLQNG A++RRRLA+YCLKDAYLPQRL+DKLM NY EMARVTGVP +
Sbjct: 469 QKEDVHYSIITDLQNGTADSRRRLAIYCLKDAYLPQRLMDKLMCFVNYTEMARVTGVPFN 528
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLD 519
FLL+RGQ IKV+SQL RKA Q +LV+PN++ G+++ YEGATV+E G+Y+ PIATLD
Sbjct: 529 FLLARGQQIKVISQLFRKALQHDLVVPNIRVNGTDE-QYEGATVIEPIKGYYDTPIATLD 587
Query: 520 FASLYPSIMMAYNLCYSTLVTPEDARKLNLPPEC-VNKTPSGETFVKSNLQKGXXXXXXX 578
F+SLYPSIM A+NLCY+TL+ A L L + + TP+G+ FVK +++KG
Sbjct: 588 FSSLYPSIMQAHNLCYTTLLDSNTAELLKLKQDVDYSVTPNGDYFVKPHVRKGLLPIILA 647
Query: 579 XXXXXXXXXXXXXXXXXXPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVT 638
P +KAVLDGRQLALK+SANSVYGFTGAT G+LPC+ ISSSVT
Sbjct: 648 DLLNARKKAKADLKKETDPFKKAVLDGRQLALKVSANSVYGFTGATNGRLPCLAISSSVT 707
Query: 639 SYGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADY 698
SYGRQMIE TK +VE ++ GY H+A VIYGDTDSVMV+FGV T+ AMKLG EAA+Y
Sbjct: 708 SYGRQMIEKTKDVVEKRYRIENGYSHDAVVIYGDTDSVMVKFGVKTLPEAMKLGEEAANY 767
Query: 699 ISGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKN 758
+S F PIKLEFEKVY+PYLLISKKRYAGL+WT + +DKMD+KGIETVRRDNC LV
Sbjct: 768 VSDQFPNPIKLEFEKVYFPYLLISKKRYAGLFWTRTDTYDKMDSKGIETVRRDNCPLVSY 827
Query: 759 LVTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVE 818
++ L K+L+D+D+ GA + K ISDLL N++D+S LVITK L+KT DY K AHVE
Sbjct: 828 VIDTALRKMLIDQDVEGAQLFTKKVISDLLQNKIDMSQLVITKALSKT--DYAAKMAHVE 885
Query: 819 LAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQI 878
LAERMRKRDA +AP +GDRV YVIIK A+G + Y RSEDPIYVLENNIPID YYLENQ+
Sbjct: 886 LAERMRKRDAGSAPAIGDRVAYVIIKGAQGDQFYMRSEDPIYVLENNIPIDAKYYLENQL 945
Query: 879 SKPLLRIFEPILKNASKELLSGDHTRSISISTPSNSGIMKFAKRQLSCIGCKALISNG-- 936
SKPLLRIFEPIL + LL GDHTR+IS++ PS GIMKFA + +C+GCKA I G
Sbjct: 946 SKPLLRIFEPILGEKASSLLHGDHTRTISMAAPSVGGIMKFAVKVETCLGCKAPIKKGKT 1005
Query: 937 TLCSHCKGREAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRK 996
LC +C R AELY + V+QV +LEV F RLWTQCQ CQGS+HQDV+CTSRDCPIFY R
Sbjct: 1006 ALCENCLNRSAELYQRQVAQVNDLEVRFARLWTQCQRCQGSMHQDVICTSRDCPIFYMRI 1065
Query: 997 KAQKDMAEAKLQLDRWN 1013
K + ++ L R++
Sbjct: 1066 AEHKKLQQSVDLLKRFD 1082
Score = 674 (242.3 bits), Expect = 2.9e-271, Sum P(2) = 2.9e-271
Identities = 143/355 (40%), Positives = 212/355 (59%)
Query: 52 EDEESLILRDIEQRQDFASRLAKWARPPLSSGYVSQCQSIMFQQLDIDYVIGDSNRELLP 111
EDE + ++Q + +S+ +W RP L + + I FQQ+D +
Sbjct: 60 EDELAEYASQLDQDEIKSSKDQQWQRPALPA-INPEKDDIYFQQIDSE-----------E 107
Query: 112 LSSGSAAIIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREAN 171
+ GS IR+FGVT G+S+ V GF PYFY+ P G P+ + F Q L+ A
Sbjct: 108 FTEGSVPSIRLFGVTDNGNSILVHVVGFLPYFYVKAPVGFRPEMLERFTQDLD-----AT 162
Query: 172 RNSKVPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGI----QLD 227
N V + H + K ++ +Q + PF+KI P +++ R + +RG +L
Sbjct: 163 CNGGV---IDHCIIEMKENLYGFQGNEKSPFIKIFTTNPRILSRARNVFERGEFNFEELF 219
Query: 228 GLGMKSFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYR-KTAKTLSYCQLEFDCLYSD 286
+G+ T+ESN + LRFMIDC++VG NWI +P KY+ + +S CQ+E Y D
Sbjct: 220 PVGV-GVTTFESNTQYLLRFMIDCDVVGMNWIHLPASKYQFRYQNRVSNCQIEAWINYKD 278
Query: 287 IISRHPEGEFSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQVANLVTLQGEKQPFIRNV 346
+IS EG++SKMAP RI+SFDIECAGRKG FP+P+ DPVIQ+A++VT G+ PF+RNV
Sbjct: 279 LISLPAEGQWSKMAPLRIMSFDIECAGRKGVFPDPSIDPVIQIASIVTQYGDSTPFVRNV 338
Query: 347 MTLKSCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
+ +C+ IVG V F+ + ++L +W F+R+VDPDV+IGYNIC FD+PYL+++
Sbjct: 339 FCVDTCSQIVGTQVYEFQNQAEMLSSWSKFVRDVDPDVLIGYNICNFDIPYLLDR 393
Score = 37 (18.1 bits), Expect = 2.5e-63, Sum P(2) = 2.5e-63
Identities = 4/10 (40%), Positives = 8/10 (80%)
Query: 525 PSIMMAYNLC 534
P +++ YN+C
Sbjct: 374 PDVLIGYNIC 383
>FB|FBgn0263600 [details] [associations]
symbol:DNApol-delta "DNA-polymerase-delta" species:7227
"Drosophila melanogaster" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS;NAS;IDA] [GO:0043625 "delta DNA polymerase
complex" evidence=ISS;IDA] [GO:0008296 "3'-5'-exodeoxyribonuclease
activity" evidence=IDA] [GO:0006273 "lagging strand elongation"
evidence=NAS] [GO:0006272 "leading strand elongation" evidence=NAS]
[GO:0008310 "single-stranded DNA specific 3'-5'
exodeoxyribonuclease activity" evidence=NAS] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005875
"microtubule associated complex" evidence=IDA] [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0005875 EMBL:AE014296
GO:GO:0022008 GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006974 GO:GO:0051539 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 GO:GO:0008296 Gene3D:3.90.1600.10
InterPro:IPR023211 TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687
Pfam:PF14260 GeneTree:ENSGT00560000077365 GO:GO:0043625 EMBL:X88928
EMBL:AY113526 RefSeq:NP_524099.2 UniGene:Dm.2838
ProteinModelPortal:P54358 SMR:P54358 DIP:DIP-22360N IntAct:P54358
MINT:MINT-877114 STRING:P54358 PaxDb:P54358
EnsemblMetazoa:FBtr0075522 GeneID:39746 KEGG:dme:Dmel_CG5949
CTD:39746 FlyBase:FBgn0263600 InParanoid:P54358 OMA:RSFRPYF
OrthoDB:EOG4RFJ7F PhylomeDB:P54358 GenomeRNAi:39746 NextBio:815171
Bgee:P54358 GermOnline:CG5949 Uniprot:P54358
Length = 1092
Score = 1882 (667.6 bits), Expect = 2.9e-271, Sum P(2) = 2.9e-271
Identities = 372/612 (60%), Positives = 455/612 (74%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+KEDVHHSII+DLQNG+ +TRRRLA+YCLKDAYLP RLL+KLM I NY+EMARVTGVP+
Sbjct: 469 QKEDVHHSIITDLQNGDEQTRRRLAMYCLKDAYLPLRLLEKLMAIVNYMEMARVTGVPLE 528
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLD 519
LL+RGQ IKVLSQLLRKAK K ++P+ GS++ YEGATV+E + G+Y PI+TLD
Sbjct: 529 SLLTRGQQIKVLSQLLRKAKTKGFIMPSYTSQGSDE-QYEGATVIEPKRGYYADPISTLD 587
Query: 520 FASLYPSIMMAYNLCYSTLV---TPEDARKL-NLPPECVNKTPSGETFVKSNLQKGXXXX 575
FASLYPSIMMA+NLCY+TLV T E R+ NL + V +TP+ FVKS +++G
Sbjct: 588 FASLYPSIMMAHNLCYTTLVLGGTREKLRQQENLQDDQVERTPANNYFVKSEVRRGLLPE 647
Query: 576 XXXXXXXXXXXXXXXXXXXXXPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISS 635
P ++ VLDGRQLALKISANSVYGFTGA VG+LPC+EIS
Sbjct: 648 ILESLLAARKRAKNDLKVETDPFKRKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISG 707
Query: 636 SVTSYGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREA 695
SVT+YGR MIE TK VE +T GYE+NA VIYGDTDSVMV FGV T+E +M+LGREA
Sbjct: 708 SVTAYGRTMIEMTKNEVESHYTQANGYENNAVVIYGDTDSVMVNFGVKTLERSMELGREA 767
Query: 696 ADYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLL 755
A+ +S F+ PIKLEFEKVYYPYLLI+KKRYAGLY+T P+ +DKMD KGIETVRRDN L
Sbjct: 768 AELVSSKFVHPIKLEFEKVYYPYLLINKKRYAGLYFTRPDTYDKMDCKGIETVRRDNSPL 827
Query: 756 VKNLVTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAA 815
V NL+ CL K+L++RD GAV YVK I+DLL NR+D+S LVITK L KT DY K A
Sbjct: 828 VANLMNSCLQKLLIERDPDGAVAYVKQVIADLLCNRIDISHLVITKELAKT--DYAAKQA 885
Query: 816 HVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLE 875
HVELA +M+KRD TAP +GDRVPYVI AAK AY+++EDP+YVLEN++PID YYLE
Sbjct: 886 HVELAAKMKKRDPGTAPKLGDRVPYVICAAAKNTPAYQKAEDPLYVLENSVPIDATYYLE 945
Query: 876 NQISKPLLRIFEPIL-KNASKELLSGDHTRSISISTPSNSGIMKFAKRQLSCIGCKALIS 934
Q+SKPLLRIFEPIL NA LL G+HTR+ ++ T G+ F ++ SC+GCK+L+
Sbjct: 946 QQLSKPLLRIFEPILGDNAESILLKGEHTRTRTVVTSKVGGLAGFMTKKTSCLGCKSLMP 1005
Query: 935 NG----TLCSHCKGREAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCP 990
G LC HC+ R +ELY K V +ELE F RLWT+CQ CQ SLH++V+C++RDCP
Sbjct: 1006 KGYEQACLCPHCEPRMSELYQKEVGAKRELEETFSRLWTECQRCQESLHEEVICSNRDCP 1065
Query: 991 IFYRRKKAQKDM 1002
IFY R+K + D+
Sbjct: 1066 IFYMRQKVRMDL 1077
Score = 750 (269.1 bits), Expect = 2.9e-271, Sum P(2) = 2.9e-271
Identities = 155/358 (43%), Positives = 221/358 (61%)
Query: 52 ED-EESLILRDIEQRQDFASRLAKWARPPLSSGYVSQCQSIMFQQLDIDYVIGDSNRELL 110
ED +++L++ D + Q + R W+RPP S+ ++ FQQLD++ +G +
Sbjct: 40 EDMDQTLLMGDGPENQTTSER---WSRPPPPELDPSK-HNLEFQQLDVENYLGQPLPGMP 95
Query: 111 PLSSGSAAIIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREA 170
G ++R+FGVT EG+SVCC VHGF PYFYI P + L+ ++
Sbjct: 96 GAQIGPVPVVRMFGVTMEGNSVCCHVHGFCPYFYIEAPSQFEEHHCEKLQKALDQKVIAD 155
Query: 171 NRNSK--VPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDG 228
RN+K V + V +E+V+K +I Y K Q ++KI V LP VA+ +L + + +
Sbjct: 156 IRNNKDNVQEAVLMVELVEKLNIHGYNGDKKQRYIKISVTLPRFVAAASRLLKKEVIMSE 215
Query: 229 LGMKSFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYR---KTAKTL--SYCQLEFDCL 283
+ + +E+N+ F +RFM+D ++VG NWIE+P+G +R +K L S CQ+E D
Sbjct: 216 IDFQDCRAFENNIDFDIRFMVDTDVVGCNWIELPMGHWRIRNSHSKPLPESRCQIEVDVA 275
Query: 284 YSDIISRHPEGEFSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQVANLVTLQGEKQPFI 343
+ IS PEGE+SK+APFRILSFDIECAGRKG FPE DPVIQ+AN+V QGE++PFI
Sbjct: 276 FDRFISHEPEGEWSKVAPFRILSFDIECAGRKGIFPEAKIDPVIQIANMVIRQGEREPFI 335
Query: 344 RNVMTLKSCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
RNV TL CAPI+G V+ + E +L W F+REVDPD++ GYNI FD PYL+ +
Sbjct: 336 RNVFTLNECAPIIGSQVLCHDKETQMLDKWSAFVREVDPDILTGYNINNFDFPYLLNR 393
>UNIPROTKB|Q8X0N7 [details] [associations]
symbol:B10H4.020 "DNA polymerase" species:5141 "Neurospora
crassa" [GO:0000084 "S phase of mitotic cell cycle" evidence=IBA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0006287 "base-excision
repair, gap-filling" evidence=IBA] [GO:0006297 "nucleotide-excision
repair, DNA gap filling" evidence=IBA] [GO:0007346 "regulation of
mitotic cell cycle" evidence=IBA] [GO:0008408 "3'-5' exonuclease
activity" evidence=IBA] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IBA] [GO:0043625 "delta DNA polymerase
complex" evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0007346 GO:GO:0000166 GO:GO:0003677
SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408 GO:GO:0043137
GO:GO:0003887 GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 InterPro:IPR025687 Pfam:PF14260
HOGENOM:HOG000036616 GO:GO:0043625 OrthoDB:EOG4B01XB HSSP:Q56366
EMBL:AL670010 ProteinModelPortal:Q8X0N7 STRING:Q8X0N7
Uniprot:Q8X0N7
Length = 1104
Score = 1964 (696.4 bits), Expect = 9.9e-271, Sum P(2) = 9.9e-271
Identities = 381/649 (58%), Positives = 489/649 (75%)
Query: 375 DFIREVDPDVMI-GYNICKFDLPYLIE-KEDVHHSIISDLQNGNAETRRRLAVYCLKDAY 432
D ++ V D + Y + +L E KEDVHHS+I++L G E+RRRLA+YCLKDAY
Sbjct: 453 DMLQLVQRDYQLRSYTLNSVCSHFLGEQKEDVHHSMITELFEGTPESRRRLALYCLKDAY 512
Query: 433 LPQRLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAG 492
LPQRL+DKL + NY EMARVTGVP +FLL+RGQ +K LSQL RKA ++ LVIPN++
Sbjct: 513 LPQRLMDKLSCLENYTEMARVTGVPFNFLLARGQQVKFLSQLFRKALEQKLVIPNLRPES 572
Query: 493 SEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLVTPEDARKLNLPP- 551
SE+ YEGATV+E G+Y+ PIATLDFASLYPSIM A+NLCY+TL+ D + +L
Sbjct: 573 SEE-QYEGATVIEPTRGYYDVPIATLDFASLYPSIMQAHNLCYTTLIKKRDIERWDLKKD 631
Query: 552 ECVNKTPSGETFVKSNLQKGXXXXXXXXXXXXXXXXXXXXXXXXXPLEKAVLDGRQLALK 611
E TP+G+ FV + +KG P +KAVL+GRQLALK
Sbjct: 632 EDYIVTPNGDMFVTTKQRKGLLAQILEELLSARKQAKRELAVEKDPFKKAVLNGRQLALK 691
Query: 612 ISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYG 671
+SANSVYG TGAT G+LPC+EI+SSVTS+GRQMIE TKK VE+++T GY H+A+VIYG
Sbjct: 692 VSANSVYGLTGATNGKLPCLEIASSVTSFGRQMIERTKKEVEERYTIANGYSHDAQVIYG 751
Query: 672 DTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLYW 731
DTDSVMV+FG + AMKLG++A++Y+SG FIKPIKLEFEKVY+PYLLI+KKRYAGLYW
Sbjct: 752 DTDSVMVKFGTKDLAEAMKLGQDASEYVSGKFIKPIKLEFEKVYFPYLLINKKRYAGLYW 811
Query: 732 TNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQYVKSTISDLLMNR 791
T PEK+DKMDTKGIETVRRDNCLLV+ ++ + L IL+D+D+PGA YVK TI+DLL N+
Sbjct: 812 TKPEKYDKMDTKGIETVRRDNCLLVQTVIEKVLRMILIDQDVPGAQAYVKDTIADLLQNK 871
Query: 792 MDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKA 851
+D+S LVITK LTK ++Y+ K AHVELA+RM+KRDA +AP +GDRV YV++K A G+K
Sbjct: 872 IDMSKLVITKALTK--ENYDAKQAHVELAQRMKKRDAGSAPGLGDRVAYVMVKGATGSKN 929
Query: 852 YERSEDPIYVLENNIPIDTHYYLENQISKPLLRIFEPIL-KNASKELLSGDHTRSISIST 910
+ERSEDPIYVLE+N+PIDT YYL+NQ++KPL RIFEPIL + +K LL GDHTR +S++
Sbjct: 930 FERSEDPIYVLEHNVPIDTKYYLDNQLAKPLGRIFEPILGETKAKSLLHGDHTRVVSVAA 989
Query: 911 PSNSGIMKFAKRQLSCIGCKALI-----SNGTLCSHCKGREAELYCKTVSQVQELEVLFG 965
P+ G+MKFAK+ +C+GCK + S G +C+ R ELY KT+ +V +LEV FG
Sbjct: 990 PTVGGLMKFAKKTQTCMGCKKPLTGKEESQGAVCADDAPRVGELYKKTLDRVSDLEVRFG 1049
Query: 966 RLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKLQLDRWNF 1014
RLWTQCQ CQGS+H +V+C+S+DCPIFY R KA+KD+ +A +L R++F
Sbjct: 1050 RLWTQCQRCQGSMHCEVICSSKDCPIFYMRMKAKKDLEDANKELQRFDF 1098
Score = 663 (238.4 bits), Expect = 9.9e-271, Sum P(2) = 9.9e-271
Identities = 140/348 (40%), Positives = 203/348 (58%)
Query: 60 RDIEQ-RQDFASRLAKWARPPLSSGYVSQCQSIMFQQLDIDYVIGDSNRELLPLSSGSAA 118
+DI +Q+ + + W RPPL + Y S+ FQ ++ + G G A
Sbjct: 77 QDISDLKQNNSEKDQAWERPPLPATYNPATDSLCFQSIEAEE--G--------FLHGGQA 126
Query: 119 IIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANRNSKVPQ 178
I++FGVT G+SV V F+ Y Y+ P GPDD + LE ++ +P
Sbjct: 127 TIKLFGVTENGNSVLLHVKDFKHYLYVQAPVSFGPDDCPKYRAFLETQLA-------MPT 179
Query: 179 FVRHIEMVQKRSIMY-YQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGM-KS--- 233
H + R MY +Q P++K+ V P + R +++ + + GM KS
Sbjct: 180 PAIHSVTLTMRENMYGFQGNTQNPYIKVTVNDPKFLPRVRRLIETN-KANWKGMWKSDGS 238
Query: 234 FMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAKTLSYCQLEFDCLYSDIISRHPE 293
MT++ ++ + LRFM+DC+I G +W+E P G Y+ S CQ+E + Y D+I+ P
Sbjct: 239 IMTFD-DIQYLLRFMVDCSIAGMSWVEAPAGSYQLVNDKHSNCQIEAEMSYRDLIAHKPV 297
Query: 294 GEFSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQVANLVTLQGEKQPFIRNVMTLKSCA 353
GE+SKMAP RILSFDIECAGRKG FPEP HD VIQ+AN+VT GEK+PF+RNV L + +
Sbjct: 298 GEWSKMAPLRILSFDIECAGRKGIFPEPQHDSVIQIANIVTKYGEKKPFVRNVFCLDTTS 357
Query: 354 PIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
PIV ++SF+ E D+L WR+F+ +VDPD++IGYNI FD PYL+++
Sbjct: 358 PIVATQILSFDREEDMLREWRNFLEQVDPDIIIGYNIANFDFPYLLDR 405
>DICTYBASE|DDB_G0285381 [details] [associations]
symbol:polD1 "DNA polymerase delta subunit 1"
species:44689 "Dictyostelium discoideum" [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA;ISS;IBA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0043625 "delta DNA polymerase complex" evidence=ISS;IBA]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0006287 "base-excision repair,
gap-filling" evidence=IBA] [GO:0005634 "nucleus" evidence=IEA;IBA]
[GO:0000084 "S phase of mitotic cell cycle" evidence=IBA]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 dictyBase:DDB_G0285381 GO:GO:0007346
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
EMBL:AAFI02000079 GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084
GO:GO:0008408 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687
Pfam:PF14260 OMA:MIEQTKQ GO:GO:0043625 RefSeq:XP_638283.1
HSSP:P26811 STRING:Q54N97 EnsemblProtists:DDB0232268 GeneID:8625091
KEGG:ddi:DDB_G0285381 ProtClustDB:PTZ00166 Uniprot:Q54N97
Length = 1104
Score = 1839 (652.4 bits), Expect = 1.9e-265, Sum P(2) = 1.9e-265
Identities = 360/645 (55%), Positives = 465/645 (72%)
Query: 375 DFIREVDPD-VMIGYNICKFDLPYLIE-KEDVHHSIISDLQNGNAETRRRLAVYCLKDAY 432
D ++ + D + Y++ +L E KEDVH SIISDLQNG + RRRLAVYC+KDA
Sbjct: 463 DLMQAIQRDHKLTSYSLNNVSAHFLKEQKEDVHFSIISDLQNGTDDDRRRLAVYCIKDAV 522
Query: 433 LPQRLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAG 492
LP RLLDKLM + NY EMARVTGVP+S+LL RG+ IKVLSQL RKA +N +IP K G
Sbjct: 523 LPMRLLDKLMILINYTEMARVTGVPLSYLLGRGEGIKVLSQLYRKAMVENFLIPTYKVTG 582
Query: 493 SEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLVTPEDARKLNLPPE 552
+ ++GA V+E GFY+ PIATLDF SLYPSIMMA+NLCYSTL++ E+A+KL PPE
Sbjct: 583 KGE-KFQGAIVIEPTPGFYDTPIATLDFTSLYPSIMMAHNLCYSTLLSAEEAKKL--PPE 639
Query: 553 CVNKTPSGETFVKSNLQKGXXXXXXXXXXXXXXXXXXXXXXXXXPLEKAVLDGRQLALKI 612
TP G+ F+KS+ +KG P ++AVLDGRQLALKI
Sbjct: 640 IYTTTPFGDHFIKSDTKKGLLPRILEELLSARKKAKDELKNEKDPFKRAVLDGRQLALKI 699
Query: 613 SANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGD 672
SANSVYGFTGA VG+LPC+EIS SVTS+GR+M++ TKK+VE+++T GY+H+A +IYGD
Sbjct: 700 SANSVYGFTGARVGKLPCLEISRSVTSFGREMLDKTKKIVEERYTIANGYKHDAVIIYGD 759
Query: 673 TDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWT 732
TDSVMV+FGV TV AM++GR+AA +++ TFI+PI L+FEKVYYPYLL++KK+YAGLYWT
Sbjct: 760 TDSVMVKFGVKTVAEAMEMGRDAAKFVTTTFIRPINLDFEKVYYPYLLMAKKKYAGLYWT 819
Query: 733 NPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQYVKSTISDLLMNRM 792
P+ D+MD KG+E VRRD CLLV+N+V+ L KIL+++D+ A +Y KS ISDLL NR+
Sbjct: 820 KPDIHDRMDVKGLEMVRRDTCLLVRNVVSTILKKILIEKDLKSAEEYTKSVISDLLQNRL 879
Query: 793 DLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAY 852
DLS+LVITK L+KT Y+ K H ELA +MR RD ATAPN+GDRVPYV+I+ +KGA Y
Sbjct: 880 DLSMLVITKALSKT--QYKGKVIHNELARKMRARDPATAPNLGDRVPYVVIQGSKGAPIY 937
Query: 853 ERSEDPIYVLENNIPIDTHYYLENQISKPLLRIFEPILKNASKELLSGDHTRSISISTPS 912
E++EDP+Y LE+NI +D YYL+ Q+ PL+RIF+PI+ N + G+HTR+I+ ST S
Sbjct: 938 EKAEDPLYALEHNILLDCQYYLDKQLKAPLIRIFKPIMSNPDL-IFHGEHTRTIAQSTLS 996
Query: 913 --NSGIMKFAKRQLSCIGC-KALI-SNGTLCSHCKGREAELYCKTVSQVQELEVLFGRLW 968
N G K++ C+ C K L + T C +C+ +EA LY ++ +V LE F W
Sbjct: 997 DNNKGFFGTLKKKKVCMNCPKELTDTESTTCINCQHKEASLYQTSLEKVTSLETKFSEAW 1056
Query: 969 TQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKLQLDRWN 1013
TQCQ C GSLHQ VLC++RDCPIFY R K Q D+ EAK L+R+N
Sbjct: 1057 TQCQRCSGSLHQPVLCSNRDCPIFYMRTKVQLDLIEAKKTLNRFN 1101
Score = 738 (264.8 bits), Expect = 1.9e-265, Sum P(2) = 1.9e-265
Identities = 156/359 (43%), Positives = 216/359 (60%)
Query: 53 DEESLILRD---IEQRQDFASRLAKWARPPLSSGYVSQCQSIMFQQLDIDYV-IGDSNRE 108
D E++I D I+ + D + +L W+R P+ V + ++FQQL++DY I +
Sbjct: 60 DVENIIASDSMDIDIQDDGSQQLFLWSRKPVQD-LVPHKKPLIFQQLEVDYTEIKEPVPG 118
Query: 109 LLPLSSGSAAIIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHF-HQILEGRM 167
+ G IR+FGVT+EG+SV CKVHGF PYF+ISCP G D H + E
Sbjct: 119 MPGPKVGPLPAIRLFGVTKEGNSVLCKVHGFLPYFFISCPPGFTEADCKSLKHDLNESMK 178
Query: 168 REANR-NSK-VPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRG-- 223
+N+ N K + V I++ +K+SIM Y F++I + LP V CR I + G
Sbjct: 179 MSSNQSNEKDIENIVVSIDIEKKKSIMGYNPNPLSDFIRITLILPKFVTRCREIFESGRH 238
Query: 224 -IQLDGLGMKSFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAKTLSYCQLEFDC 282
+ G + + TYESN+LFALRF+ID I G +WIE+P Y+ + +S CQ+E D
Sbjct: 239 HFTIPGQPFRQYQTYESNILFALRFLIDKGITGCSWIELPANTYKLSETPVSTCQIEVDT 298
Query: 283 LYSDIISRHPEGEFSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQVANLVTLQGEKQPF 342
IIS + AP+RILSFDIECAGRKG FPEP DPVIQ++N+V G+ +PF
Sbjct: 299 SLETIISLSDD---DSPAPYRILSFDIECAGRKGVFPEPEKDPVIQISNIVKNNGDAEPF 355
Query: 343 IRNVMTLKSCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
I+N+ TLK C+ IVG V+ + E D+L WR F+ +VDPDV+IGYNI FD+PYLI +
Sbjct: 356 IKNIFTLKGCSSIVGAHVIPHKREEDLLREWRKFVIKVDPDVIIGYNIVNFDIPYLISR 414
>UNIPROTKB|J9NS34 [details] [associations]
symbol:POLD1 "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 TIGRFAMs:TIGR00592 GeneTree:ENSGT00560000077365
OMA:MIEQTKQ EMBL:AAEX03000791 Ensembl:ENSCAFT00000045094
Uniprot:J9NS34
Length = 1131
Score = 1656 (588.0 bits), Expect = 7.7e-251, Sum P(2) = 7.7e-251
Identities = 328/543 (60%), Positives = 409/543 (75%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+KEDV HSII+DLQNGN +TRRRLAVYCLKDA+LP RLL++LM + N +EMARVTGVP+
Sbjct: 485 QKEDVQHSIITDLQNGNDQTRRRLAVYCLKDAFLPLRLLERLMVLVNAMEMARVTGVPLG 544
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLD 519
+LLSRGQ +KV+SQLLR+A ++ L++P VK G E Y GATV+E G+Y+ PIATLD
Sbjct: 545 YLLSRGQQVKVVSQLLRQAMREGLLMPVVKTEGGED--YTGATVIEPLKGYYDVPIATLD 602
Query: 520 FASLYPSIMMAYNLCYSTLVTPEDARKLNLPPECVNKTPSGETFVKSNLQKGXXXXXXXX 579
F+SLYPSIMMA+NLCY+TL+ P A+KL L + KTP+G+ FVK++++KG
Sbjct: 603 FSSLYPSIMMAHNLCYTTLLRPGAAQKLGLTKDQFIKTPTGDEFVKTSVRKGLLPQILEN 662
Query: 580 XXXXXXXXXXXXXXXXXPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTS 639
PL + VLDGRQLALK+SANSVYGFTGA VG+LPC+EIS SVT
Sbjct: 663 LLSARKRAKAELAKETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTG 722
Query: 640 YGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYI 699
+GRQMIE TK+LVE K+T GY NA+V+YGDTDSVM +FGV +V AM LGREAAD++
Sbjct: 723 FGRQMIEKTKQLVESKYTVENGYSANAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWV 782
Query: 700 SGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTN-PEKFDKMDTKGIETVRRDNCLLVKN 758
SG F PI+LEFEKVY+PYLLISKKRYAGL +++ P+ D+MD KG+E VRRDNC LV N
Sbjct: 783 SGHFPPPIRLEFEKVYFPYLLISKKRYAGLLFSSRPDAHDRMDCKGLEAVRRDNCPLVAN 842
Query: 759 LVTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVE 818
LVT L ++L+DRD GAV + + ISDLL NR+D+S LVITK LT+ DY K AHVE
Sbjct: 843 LVTASLRRLLIDRDPAGAVAHAQDVISDLLCNRIDISQLVITKELTRAAADYAGKQAHVE 902
Query: 819 LAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQI 878
LAERMRKRD +AP++GDRVPYVII AAKG AY +SEDP++VLE+++PIDT YYLE Q+
Sbjct: 903 LAERMRKRDPGSAPSLGDRVPYVIIGAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQL 962
Query: 879 SKPLLRIFEPILKNASKE--LLSGDHTRSISISTPSNSGIMKFAKRQLSCIGCKALISNG 936
+KPLLRIFEPIL E LL GDHTR ++ T G++ FAKR CIGC+ ++++
Sbjct: 963 AKPLLRIFEPILGEGRAEAVLLRGDHTRCKTVLTGKVGGLLAFAKRHSCCIGCRTVLNHQ 1022
Query: 937 TLC 939
C
Sbjct: 1023 GKC 1025
Score = 783 (280.7 bits), Expect = 7.7e-251, Sum P(2) = 7.7e-251
Identities = 166/365 (45%), Positives = 224/365 (61%)
Query: 52 EDEESLILRDIEQRQD--FASRL--AKWARP---PLSSGYVSQCQSIMFQQLDIDYVIGD 104
E EE L+ +E D F+ A+W RP PL Q + ++FQQL+ID+ +G
Sbjct: 52 EQEEELLQPPLEGAPDGQFSPTAIDARWLRPTPPPLDP----QKEPLIFQQLEIDHYVGP 107
Query: 105 SNRELLP----LSSGSAAIIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHFH 160
+ + LP S S I+R FGVT EG SVCC +HGF PYFY P G G + +
Sbjct: 108 A--QPLPGAPTPSRDSVPILRAFGVTDEGVSVCCHIHGFAPYFYTPAPSGFGSEHLGDLQ 165
Query: 161 QILEGRMREANRNSK--VPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRG 218
+ L + R K V +E+ + S+ Y PFL+I +ALP +VA R
Sbjct: 166 RELNAAISRDQRGGKELTGPAVLSVELCSRESMFGYHGHGPSPFLRITLALPRLVAPARR 225
Query: 219 ILDRGIQLDGLGMKSFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKY--RKTAKTLSYC 276
+L++GI++ GLG SF YE+NV F +RFM+D +IVG NW+E+P KY R K + C
Sbjct: 226 LLEQGIRVAGLGTPSFAPYEANVDFEIRFMVDTDIVGCNWLELPAEKYILRPQGKA-TLC 284
Query: 277 QLEFDCLYSDIISRHPEGEFSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQVANLVTLQ 336
QLE D L+SD++S PEG++ ++AP R+LSFDIECAGRKG FPEP DPVIQ+ +L
Sbjct: 285 QLEADVLWSDVVSHPPEGQWQRIAPLRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRW 344
Query: 337 GEKQPFIRNVMTLKSCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLP 396
GE +PF+R +TL+ CAPI+G V S+E E ++L AW FIR +DPDV+ GYNI FDLP
Sbjct: 345 GEPEPFLRLALTLRPCAPILGAKVQSYEREEELLQAWSTFIRTMDPDVITGYNIQNFDLP 404
Query: 397 YLIEK 401
YLI +
Sbjct: 405 YLISR 409
>ASPGD|ASPL0000065466 [details] [associations]
symbol:AN7325 species:162425 "Emericella nidulans"
[GO:0006281 "DNA repair" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0010972 "negative regulation of G2/M transition of mitotic cell
cycle" evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 EMBL:BN001304 SUPFAM:SSF53098 GO:GO:0000084
GO:GO:0008408 EMBL:AACD01000127 GO:GO:0043137 GO:GO:0003887
GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616 OMA:MIEQTKQ
GO:GO:0043625 OrthoDB:EOG4B01XB RefSeq:XP_680594.1 STRING:Q5AWK5
EnsemblFungi:CADANIAT00000110 GeneID:2870046 KEGG:ani:AN7325.2
Uniprot:Q5AWK5
Length = 1044
Score = 1443 (513.0 bits), Expect = 1.4e-246, Sum P(3) = 1.4e-246
Identities = 288/472 (61%), Positives = 352/472 (74%)
Query: 375 DFIREVDPDVMI-GYNICKFDLPYLIE-KEDVHHSIISDLQNGNAETRRRLAVYCLKDAY 432
D ++ V D + Y + +L E KEDVHH++I++L NG ++RRRLAVYCLKDAY
Sbjct: 453 DLLQLVQRDHNLRSYTLNSVSYEFLGEQKEDVHHTMITELYNGTPDSRRRLAVYCLKDAY 512
Query: 433 LPQRLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAG 492
LPQRL+DKLM + NY EMARVTGVP +FLLSRGQ +K LSQL RKA Q+ LVIPN+K
Sbjct: 513 LPQRLMDKLMCLVNYTEMARVTGVPFNFLLSRGQQVKFLSQLYRKALQQQLVIPNMKST- 571
Query: 493 SEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLVTPEDARKLNLPPE 552
EQ YEGATV+E +Y+ PIATLDFASLYPSI+ A+NLCY+TL+ + +
Sbjct: 572 DEQD-YEGATVIEPIRDYYDVPIATLDFASLYPSIIQAHNLCYTTLLNKNSVAGMKKDED 630
Query: 553 CVNKTPSGETFVKSNLQKGXXXXXXXXXXXXXXXXXXXXXXXXXPLEKAVLDGRQLALKI 612
+ TP+G+ F ++KG P +KAVL+GRQLALK+
Sbjct: 631 YI-VTPNGDMFCTPKVRKGLLSQILEELLSARKKAKKELAQETDPFKKAVLNGRQLALKV 689
Query: 613 SANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGD 672
SANSVYG TGATVG+LPC+ I+SS TSYGRQMIE TK+ VE ++T GY H+A+VIYGD
Sbjct: 690 SANSVYGLTGATVGKLPCLAIASSTTSYGRQMIEKTKQEVEARYTIANGYSHDAKVIYGD 749
Query: 673 TDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWT 732
TDSVMV+FGV +E AMKLG+EA++Y+S FIKPIKLEFEKVY+PYLLI+KKRYAGLYWT
Sbjct: 750 TDSVMVKFGVTELEEAMKLGQEASEYVSSKFIKPIKLEFEKVYFPYLLINKKRYAGLYWT 809
Query: 733 NPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQYVKSTISDLLMNRM 792
NP+K+DKMDTKGIETVRRDNCLLV+N++ LHKIL+DRD+ A +YVK TISDLL N++
Sbjct: 810 NPKKYDKMDTKGIETVRRDNCLLVQNVIETVLHKILIDRDVEAAQEYVKDTISDLLQNKI 869
Query: 793 DLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIK 844
D+S LVITK LTK D Y K AHVELAERMRKRDA +AP +GDRV YVI+K
Sbjct: 870 DMSKLVITKALTK--DSYTAKQAHVELAERMRKRDAGSAPTLGDRVAYVIVK 919
Score = 656 (236.0 bits), Expect = 1.4e-246, Sum P(3) = 1.4e-246
Identities = 145/360 (40%), Positives = 212/360 (58%)
Query: 53 DEESL--ILRDIEQ-RQDFASRLAKWARPPLSSGYVSQCQSIMFQQLDIDYVIGDSNREL 109
+EE L + +DI +++ + + +W RPPL + +I FQQ+D + G +
Sbjct: 64 EEEVLEKLTQDISGLKENNSEKDQQWERPPLGE-FDPTKDNICFQQIDAEE--GTT---- 116
Query: 110 LPLSSGSAAIIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMRE 169
G AI R+FGVT G SV V GF+ Y YI+ P G +D + LE ++
Sbjct: 117 ----MGKPAI-RLFGVTEAGQSVLLHVTGFQHYLYIAAPVGFTKEDCDPYRAFLESKI-- 169
Query: 170 ANRNSKVPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILD---RGIQL 226
+ P ++ +++ + +I +Q K +LKI V P ++ R L+ + +
Sbjct: 170 ----GQFPPVIQSVQITMRENIYGFQGNKKSYYLKITVTEPRHISKLRSALETKAQTVNY 225
Query: 227 DGLGMKS---FMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAKT--LSYCQLEFD 281
GL + +T++ N+ + LRFMID +I G +W+E P GKY A +S CQLE
Sbjct: 226 KGLWTNADGGILTFD-NIQYLLRFMIDTDIQGMSWVEAPAGKYELIAPQDKVSNCQLEAR 284
Query: 282 CLYSDIISRHPEGEFSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQVANLVTLQGEKQP 341
Y +IS P G+++KMAP RILSFDIECAGRKG FPEP HDPVIQ+AN+VT GE +P
Sbjct: 285 IDYRSLISHAPVGDWAKMAPLRILSFDIECAGRKGIFPEPNHDPVIQIANVVTRYGESKP 344
Query: 342 FIRNVMTLKSCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
FIRNV + +C+ IV ++ F+ E +L+AWRDFI++VDPDV+IGYNI FD PYL+++
Sbjct: 345 FIRNVFVMNTCSLIVNTQILEFQQEEKMLMAWRDFIQKVDPDVIIGYNIANFDFPYLLDR 404
Score = 317 (116.6 bits), Expect = 1.4e-246, Sum P(3) = 1.4e-246
Identities = 56/111 (50%), Positives = 81/111 (72%)
Query: 909 STPSNSGIMKFAKRQLSCIGCKALISN-----GTLCSHCKGREAELYCKTVSQVQELEVL 963
S P+ G+MKF K+ +C+GCK ++ G +C C+ R ELY K+++++ +LEV
Sbjct: 929 SAPTMGGLMKFTKKTQTCLGCKKPLTGKDVMAGAVCESCRPRLGELYTKSMNKMSDLEVR 988
Query: 964 FGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKLQLDRWNF 1014
FGRLWTQCQ CQGSLH +V+C+SRDCPIFY R KA+KD+ +A+ +L R++F
Sbjct: 989 FGRLWTQCQRCQGSLHCEVICSSRDCPIFYMRMKAKKDVEDAQKELARFDF 1039
Score = 37 (18.1 bits), Expect = 7.8e-23, Sum P(2) = 7.8e-23
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 629 PCIEISSSVTSYG 641
P I+I++ VT YG
Sbjct: 328 PVIQIANVVTRYG 340
>UNIPROTKB|Q5AWK5 [details] [associations]
symbol:AN7325.2 "DNA polymerase" species:227321
"Aspergillus nidulans FGSC A4" [GO:0000084 "S phase of mitotic cell
cycle" evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0007346 GO:GO:0000166 GO:GO:0003677
EMBL:BN001304 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
EMBL:AACD01000127 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687
Pfam:PF14260 HOGENOM:HOG000036616 OMA:MIEQTKQ GO:GO:0043625
OrthoDB:EOG4B01XB RefSeq:XP_680594.1 STRING:Q5AWK5
EnsemblFungi:CADANIAT00000110 GeneID:2870046 KEGG:ani:AN7325.2
Uniprot:Q5AWK5
Length = 1044
Score = 1443 (513.0 bits), Expect = 1.4e-246, Sum P(3) = 1.4e-246
Identities = 288/472 (61%), Positives = 352/472 (74%)
Query: 375 DFIREVDPDVMI-GYNICKFDLPYLIE-KEDVHHSIISDLQNGNAETRRRLAVYCLKDAY 432
D ++ V D + Y + +L E KEDVHH++I++L NG ++RRRLAVYCLKDAY
Sbjct: 453 DLLQLVQRDHNLRSYTLNSVSYEFLGEQKEDVHHTMITELYNGTPDSRRRLAVYCLKDAY 512
Query: 433 LPQRLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAG 492
LPQRL+DKLM + NY EMARVTGVP +FLLSRGQ +K LSQL RKA Q+ LVIPN+K
Sbjct: 513 LPQRLMDKLMCLVNYTEMARVTGVPFNFLLSRGQQVKFLSQLYRKALQQQLVIPNMKST- 571
Query: 493 SEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLVTPEDARKLNLPPE 552
EQ YEGATV+E +Y+ PIATLDFASLYPSI+ A+NLCY+TL+ + +
Sbjct: 572 DEQD-YEGATVIEPIRDYYDVPIATLDFASLYPSIIQAHNLCYTTLLNKNSVAGMKKDED 630
Query: 553 CVNKTPSGETFVKSNLQKGXXXXXXXXXXXXXXXXXXXXXXXXXPLEKAVLDGRQLALKI 612
+ TP+G+ F ++KG P +KAVL+GRQLALK+
Sbjct: 631 YI-VTPNGDMFCTPKVRKGLLSQILEELLSARKKAKKELAQETDPFKKAVLNGRQLALKV 689
Query: 613 SANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGD 672
SANSVYG TGATVG+LPC+ I+SS TSYGRQMIE TK+ VE ++T GY H+A+VIYGD
Sbjct: 690 SANSVYGLTGATVGKLPCLAIASSTTSYGRQMIEKTKQEVEARYTIANGYSHDAKVIYGD 749
Query: 673 TDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWT 732
TDSVMV+FGV +E AMKLG+EA++Y+S FIKPIKLEFEKVY+PYLLI+KKRYAGLYWT
Sbjct: 750 TDSVMVKFGVTELEEAMKLGQEASEYVSSKFIKPIKLEFEKVYFPYLLINKKRYAGLYWT 809
Query: 733 NPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQYVKSTISDLLMNRM 792
NP+K+DKMDTKGIETVRRDNCLLV+N++ LHKIL+DRD+ A +YVK TISDLL N++
Sbjct: 810 NPKKYDKMDTKGIETVRRDNCLLVQNVIETVLHKILIDRDVEAAQEYVKDTISDLLQNKI 869
Query: 793 DLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIK 844
D+S LVITK LTK D Y K AHVELAERMRKRDA +AP +GDRV YVI+K
Sbjct: 870 DMSKLVITKALTK--DSYTAKQAHVELAERMRKRDAGSAPTLGDRVAYVIVK 919
Score = 656 (236.0 bits), Expect = 1.4e-246, Sum P(3) = 1.4e-246
Identities = 145/360 (40%), Positives = 212/360 (58%)
Query: 53 DEESL--ILRDIEQ-RQDFASRLAKWARPPLSSGYVSQCQSIMFQQLDIDYVIGDSNREL 109
+EE L + +DI +++ + + +W RPPL + +I FQQ+D + G +
Sbjct: 64 EEEVLEKLTQDISGLKENNSEKDQQWERPPLGE-FDPTKDNICFQQIDAEE--GTT---- 116
Query: 110 LPLSSGSAAIIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMRE 169
G AI R+FGVT G SV V GF+ Y YI+ P G +D + LE ++
Sbjct: 117 ----MGKPAI-RLFGVTEAGQSVLLHVTGFQHYLYIAAPVGFTKEDCDPYRAFLESKI-- 169
Query: 170 ANRNSKVPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILD---RGIQL 226
+ P ++ +++ + +I +Q K +LKI V P ++ R L+ + +
Sbjct: 170 ----GQFPPVIQSVQITMRENIYGFQGNKKSYYLKITVTEPRHISKLRSALETKAQTVNY 225
Query: 227 DGLGMKS---FMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAKT--LSYCQLEFD 281
GL + +T++ N+ + LRFMID +I G +W+E P GKY A +S CQLE
Sbjct: 226 KGLWTNADGGILTFD-NIQYLLRFMIDTDIQGMSWVEAPAGKYELIAPQDKVSNCQLEAR 284
Query: 282 CLYSDIISRHPEGEFSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQVANLVTLQGEKQP 341
Y +IS P G+++KMAP RILSFDIECAGRKG FPEP HDPVIQ+AN+VT GE +P
Sbjct: 285 IDYRSLISHAPVGDWAKMAPLRILSFDIECAGRKGIFPEPNHDPVIQIANVVTRYGESKP 344
Query: 342 FIRNVMTLKSCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
FIRNV + +C+ IV ++ F+ E +L+AWRDFI++VDPDV+IGYNI FD PYL+++
Sbjct: 345 FIRNVFVMNTCSLIVNTQILEFQQEEKMLMAWRDFIQKVDPDVIIGYNIANFDFPYLLDR 404
Score = 317 (116.6 bits), Expect = 1.4e-246, Sum P(3) = 1.4e-246
Identities = 56/111 (50%), Positives = 81/111 (72%)
Query: 909 STPSNSGIMKFAKRQLSCIGCKALISN-----GTLCSHCKGREAELYCKTVSQVQELEVL 963
S P+ G+MKF K+ +C+GCK ++ G +C C+ R ELY K+++++ +LEV
Sbjct: 929 SAPTMGGLMKFTKKTQTCLGCKKPLTGKDVMAGAVCESCRPRLGELYTKSMNKMSDLEVR 988
Query: 964 FGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKLQLDRWNF 1014
FGRLWTQCQ CQGSLH +V+C+SRDCPIFY R KA+KD+ +A+ +L R++F
Sbjct: 989 FGRLWTQCQRCQGSLHCEVICSSRDCPIFYMRMKAKKDVEDAQKELARFDF 1039
Score = 37 (18.1 bits), Expect = 7.8e-23, Sum P(2) = 7.8e-23
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 629 PCIEISSSVTSYG 641
P I+I++ VT YG
Sbjct: 328 PVIQIANVVTRYG 340
>UNIPROTKB|Q22HL1 [details] [associations]
symbol:TTHERM_00636920 "DNA polymerase" species:312017
"Tetrahymena thermophila SB210" [GO:0000084 "S phase of mitotic
cell cycle" evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0007346
GO:GO:0000166 GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084
GO:GO:0008408 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
KO:K02327 InterPro:IPR025687 Pfam:PF14260 GO:GO:0043625
ProtClustDB:PTZ00166 EMBL:GG662588 RefSeq:XP_001032353.1
EnsemblProtists:EAR84690 GeneID:7846549 KEGG:tet:TTHERM_00636920
Uniprot:Q22HL1
Length = 1124
Score = 1201 (427.8 bits), Expect = 1.0e-235, Sum P(4) = 1.0e-235
Identities = 248/431 (57%), Positives = 308/431 (71%)
Query: 388 YNICKFDLPYLIE-KEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFN 446
Y++ +L E KEDVHH+ IS LQ G+AETR+RLAVYCLKDA LP +L+ KLM I+N
Sbjct: 465 YSLNSVSYHFLNEQKEDVHHTQISGLQKGDAETRKRLAVYCLKDAQLPLKLMQKLMCIYN 524
Query: 447 YVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGT-YEGATVLE 505
Y EMARVTGVPI+FL +RGQ IKV SQL R+ K NL IP + G QG +EGA VL+
Sbjct: 525 YTEMARVTGVPINFLFTRGQQIKVASQLYRRTKLLNLYIPTERSQG--QGDKFEGAFVLQ 582
Query: 506 ARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLVTPEDARKLNLPPECVNKTPSGETFVK 565
+ GFY+KPIATLDFASLYPSIMMA+NLCYSTL++ A +N + TP G+ F K
Sbjct: 583 PKKGFYDKPIATLDFASLYPSIMMAHNLCYSTLISKNVAMSMN--KDDYTLTPHGDYFAK 640
Query: 566 SNLQKGXXXXXXXXXXXXXXXXXXXXXXXXXPLEKAVLDGRQLALKISANSVYGFTGATV 625
++++G PL KAVLDGRQLALKISANSVYGFTGA V
Sbjct: 641 PHVRQGILPDILKDLLAARKKAKNELAKETDPLRKAVLDGRQLALKISANSVYGFTGAQV 700
Query: 626 GQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTV 685
GQLPC+EISSSVTS+GRQMIE T+ V + + GY ++++VIYGDTDSVMV+FG ++
Sbjct: 701 GQLPCLEISSSVTSFGRQMIEATRDFVLNHYNKANGYNYDSDVIYGDTDSVMVKFGCDSI 760
Query: 686 EAAMKLGREAADYISGT-FIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDKMDTKG 744
E AMK G+EAA+ IS FI PIKLEFEKVYYPYLLISKKRYAG ++T P+K+DK+DTKG
Sbjct: 761 EEAMKYGKEAAEMISKKLFINPIKLEFEKVYYPYLLISKKRYAGCFYTKPDKYDKIDTKG 820
Query: 745 IETVRRDNCLLVKNLVTECLHKILVDRDIPG---AVQYVKSTISDLLMNRMDLSLLVITK 801
+E VRRDNC ++ ++ CL ILV+ G ++Q++K ISDL N++D+S LVITK
Sbjct: 821 MENVRRDNCQFIREMMNTCLRYILVEHKQDGVQRSIQFIKGCISDLYQNKVDISKLVITK 880
Query: 802 GLTK-TGDDYE 811
LTK + DD E
Sbjct: 881 SLTKKSADDDE 891
Score = 534 (193.0 bits), Expect = 1.0e-235, Sum P(4) = 1.0e-235
Identities = 106/291 (36%), Positives = 175/291 (60%)
Query: 119 IIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREAN--RNSKV 176
IIR++GVT++ HSV + G PY ++ P + P+ I++ ++ RN K
Sbjct: 112 IIRMYGVTKDQHSVLVSIRGVVPYLFVRLPPQIQPN-AQTLKSIMDDLNKQGKFQRNVKT 170
Query: 177 PQFVRHIEMVQKRSIMYYQQQK--SQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSF 234
F+R IE+V+ SI YY+ + +LKI +P + + RG++++G +DG+ +
Sbjct: 171 TNFIRKIEVVKGESIKYYKGKDYAQDTYLKIYTFIPPFIPALRGMIEKGYTIDGIRFPA- 229
Query: 235 MTYESNVLFALRFMIDCNIVGGNWIEVPVGKY--RKTAKTLSYCQLEFDCLYSDIISRHP 292
+T+ESN+ FALR+MID +IVG WI++ K+ R K S CQ+E D ++
Sbjct: 230 VTFESNIPFALRYMIDADIVGMGWIKLDKEKFKIRSLDKHKSRCQIEIDVDCQNVHGMDA 289
Query: 293 EG-EFSKMAPFRILSFDIECAGRKGHFPEPTHD-PVIQVANLVTLQGEKQPFIRNVMTLK 350
+ +++ +AP RI SFDIEC + G FP + D P+IQ+A ++ + +++ +R V T+
Sbjct: 290 QDPQWADIAPLRIFSFDIECLAKSGGFPNASKDDPIIQIATVLKIHDQQEDIVRTVFTMD 349
Query: 351 SCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
+C+ I G V SF+TE ++LL W F++ VDPD+ +GYNI FD PY++E+
Sbjct: 350 TCSNIPGCIVKSFKTETELLLEWEKFLQNVDPDIFLGYNITNFDFPYILER 400
Score = 505 (182.8 bits), Expect = 1.0e-235, Sum P(4) = 1.0e-235
Identities = 98/220 (44%), Positives = 143/220 (65%)
Query: 801 KGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIY 860
K + + Y+ K AHVELA++M KRD +AP +GDR+PYVI+ AK AK YE+ EDPIY
Sbjct: 905 KAKEPSANQYKGKQAHVELAKKMAKRDPGSAPCIGDRIPYVIVAGAKSAKNYEKVEDPIY 964
Query: 861 VLENNIPIDTHYYLENQISKPLLRIFEPILKNASKELLSGDHTRS-ISISTPSNSGIMKF 919
VLEN+IP+D YY+E QI P+ RI+ I+ N L G+HT++ S G+ KF
Sbjct: 965 VLENDIPLDYDYYIEKQIKNPITRIYSHIIDNVDS-LFYGEHTKNRYQPKVNSGHGLGKF 1023
Query: 920 AKRQLSCIGCKALISNGT--LCSHC--KG--REAELYCKTVSQVQELEVLFGRLWTQCQE 973
++ SC+ CK + NG +C +C K R ++Y + + Q Q +E + +LWTQCQ
Sbjct: 1024 IVKKESCLQCKCQV-NGKQPVCDNCLEKNPQRLIDIYTEKIIQHQSIEYQYNQLWTQCQR 1082
Query: 974 CQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKLQLDRWN 1013
CQGSLH+ V+C++RDCPI+Y+R K Q D++ ++ L R++
Sbjct: 1083 CQGSLHEQVICSNRDCPIYYKRTKLQTDLSRSQQLLSRFD 1122
Score = 86 (35.3 bits), Expect = 1.0e-235, Sum P(4) = 1.0e-235
Identities = 16/56 (28%), Positives = 32/56 (57%)
Query: 53 DEESLILRDIEQRQDFASRLAKWARPPLSSGYVSQCQSIMFQQLDIDYVIGDSNRE 108
+EE + L + QD +++ K+ RPP+ + +++ F QLD DY + +N++
Sbjct: 31 EEEDIALLQANEDQDLSNK--KYCRPPIDTTKINEQNDFYFMQLDADYYLVSNNKK 84
Score = 38 (18.4 bits), Expect = 8.5e-48, Sum P(3) = 8.5e-48
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 368 DVLLAWRDFIREVDPDVMIGYNIC 391
D +A DF + P +M+ +N+C
Sbjct: 589 DKPIATLDFA-SLYPSIMMAHNLC 611
>UNIPROTKB|Q755K6 [details] [associations]
symbol:AGOS_AFL189W "DNA polymerase" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0000084 "S phase of mitotic cell cycle"
evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0006287
"base-excision repair, gap-filling" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0043137
"DNA replication, removal of RNA primer" evidence=IBA] [GO:0043625
"delta DNA polymerase complex" evidence=IBA] [GO:0045004 "DNA
replication proofreading" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0043137 GO:GO:0003887 GO:GO:0006297 GO:GO:0045004
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687 Pfam:PF14260
HOGENOM:HOG000036616 GO:GO:0043625 OrthoDB:EOG4B01XB EMBL:AE016819
GenomeReviews:AE016819_GR RefSeq:NP_985361.2 STRING:Q755K6
EnsemblFungi:AAS53185 GeneID:4621586 KEGG:ago:AGOS_AFL189W
Uniprot:Q755K6
Length = 1092
Score = 1627 (577.8 bits), Expect = 3.1e-234, Sum P(2) = 3.1e-234
Identities = 328/617 (53%), Positives = 426/617 (69%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+KEDVHHSII+ L G++ETRRRLAVYCLKDAYLP RLL+KLM + NY EMARVTGVP
Sbjct: 485 QKEDVHHSIIASLHRGDSETRRRLAVYCLKDAYLPLRLLEKLMALVNYTEMARVTGVPFP 544
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLD 519
+L++RGQ IKV+SQL RK Q + +IPN+ S+ Y+GATV+E G+Y+ PIATLD
Sbjct: 545 YLITRGQQIKVISQLYRKCLQIDTIIPNMHGNHSDD-QYQGATVIEPIRGYYDIPIATLD 603
Query: 520 FASLYPSIMMAYNLCYSTLVTPEDARKLNLPP-ECVNKTPSGETFVKSNLQKGXXXXXXX 578
F SLYPSIMMA+NLCY+TL ++L L E TP+G+ FV S ++G
Sbjct: 604 FNSLYPSIMMAHNLCYTTLCNKATVQRLQLKENEDYIITPNGDYFVTSKKRRGILPIILE 663
Query: 579 XXXXXXXXXXXXXXXXXXPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVT 638
P +K VL+GRQLALKISANSVYGFTGATVG+LPC+ ISSSVT
Sbjct: 664 ELIAARQRAKGELKKETDPFKKDVLNGRQLALKISANSVYGFTGATVGKLPCLSISSSVT 723
Query: 639 SYGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADY 698
+YGR MIE TK+ VE+K+T GY+H+A V+YGDTDSVM++FG ++ M+LG EAA Y
Sbjct: 724 AYGRTMIETTKRAVEEKYTIKNGYKHDAIVVYGDTDSVMIKFGTNELKQTMELGAEAAAY 783
Query: 699 ISGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKN 758
+S F PI LEFEKVY+PYLLI+KKRYAGLYWT PEK+DK+D KG+ +VRRD+C LV
Sbjct: 784 VSSLFKHPINLEFEKVYFPYLLINKKRYAGLYWTKPEKYDKLDQKGLASVRRDSCPLVSI 843
Query: 759 LVTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVE 818
++ + L IL++R++PGA+++V++TI DLL N+ D+S L+I+K L +Y H
Sbjct: 844 VMNKILRMILIERNVPGALKFVENTIEDLLQNKADISKLIISKTLAP---NYTNAQPHAI 900
Query: 819 LAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQI 878
LAERM+KRD PNVGDRV YVII K Y R+E+P+YVLE NI +D+ YYL Q+
Sbjct: 901 LAERMKKRDGV-GPNVGDRVDYVIIGG--NDKLYNRAENPLYVLEQNIQLDSKYYLTTQL 957
Query: 879 SKPLLRIFEPILKNASKELLSGDHTRSISISTPSNSG-IMKFAKRQLSCIGCKALI--SN 935
P++ I PI+ K+ + +SI I+T + G +M F K+ +C GC+ + +
Sbjct: 958 QNPVVSIIAPII--GEKQANAMFIVKSIKIATSNQKGGLMGFIKKVQTCKGCRGPLKKNE 1015
Query: 936 GTLCSHCKGREAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRR 995
G LC CK R ELY K VS V+ELE F RLWTQCQ C GSLH +VLC++++C IFY R
Sbjct: 1016 GPLCYSCKERSGELYLKAVSDVRELEEKFSRLWTQCQRCSGSLHNEVLCSNQNCDIFYMR 1075
Query: 996 KKAQKDMAEAKLQLDRW 1012
KA+K++ E L +W
Sbjct: 1076 VKARKELQEKVEDLSKW 1092
Score = 655 (235.6 bits), Expect = 3.1e-234, Sum P(2) = 3.1e-234
Identities = 143/332 (43%), Positives = 191/332 (57%)
Query: 75 WARPPLSSGYVSQCQSIMFQQLDIDYVIGDSNRELLP--LSSGSAAIIRIFGVTREGHSV 132
W+R L + + + I FQQLD + + LP + G++A++R FGVT +GHSV
Sbjct: 93 WSRDKLPADFAAATHDITFQQLDAEQAV-------LPGYIDGGTSAVVRFFGVTEQGHSV 145
Query: 133 CCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANRNSKVPQFVRHIEMVQKRSIM 192
C V GF+ Y Y+ P D +L + N V +E+ QK+SI
Sbjct: 146 LCSVTGFKHYMYVPAPANF---DARTDVPVLVDYL-----NDMFDGVVDSVEVCQKQSIW 197
Query: 193 YYQQQKSQPFLKIVVALPTMVASCRGILDRG-IQLDGLGMKSFMTYESNVLFALRFMIDC 251
Y + FLK++VA P + R ++G I + + T N+ + LR MIDC
Sbjct: 198 GYSGDQKLQFLKVLVADPYGLNKIRTAFEKGYITPNDTWFQGGTTTYDNIAYTLRLMIDC 257
Query: 252 NIVGGNWIEVPVGKYRKTAKT--LSYCQLEFDCLYSDIISRHPEGEFSKMAPFRILSFDI 309
IVG +WI +P GKY K +S CQLE Y D+ISR + ++S AP RILSFDI
Sbjct: 258 GIVGMSWITLPKGKYAMIPKNKKISTCQLEVSINYKDLISRPADSDWSHSAPLRILSFDI 317
Query: 310 ECAGRKGHFPEPTHDPVIQVANLVTLQGEKQPFIRNVMTLKSCAPIVGVDVMSFETERDV 369
ECAGR G FPEP DPVIQ+AN+V++ GE +PFIRNV T+ +CAPI G + ETE +
Sbjct: 318 ECAGRVGVFPEPEVDPVIQIANVVSIAGESKPFIRNVFTVDTCAPITGSQIFEHETEEAM 377
Query: 370 LLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
L WRDF+ EVDPDV+IGYN FDLPYLI +
Sbjct: 378 LKHWRDFLVEVDPDVIIGYNTTNFDLPYLINR 409
>SGD|S000002260 [details] [associations]
symbol:POL3 "Catalytic subunit of DNA polymerase delta"
species:4932 "Saccharomyces cerevisiae" [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA;IMP] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=NAS]
[GO:0006273 "lagging strand elongation" evidence=TAS] [GO:0006284
"base-excision repair" evidence=TAS] [GO:0043625 "delta DNA
polymerase complex" evidence=IBA;TAS] [GO:0006301 "postreplication
repair" evidence=TAS] [GO:0006272 "leading strand elongation"
evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] [GO:0008310 "single-stranded DNA specific 3'-5'
exodeoxyribonuclease activity" evidence=TAS] [GO:0045005
"maintenance of fidelity involved in DNA-dependent DNA replication"
evidence=IGI] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA;IMP;IDA] [GO:0043137 "DNA replication,
removal of RNA primer" evidence=IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] [GO:0005657
"replication fork" evidence=IDA] [GO:0045004 "DNA replication
proofreading" evidence=IBA] [GO:0007346 "regulation of mitotic cell
cycle" evidence=IBA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IBA] [GO:0006287 "base-excision repair, gap-filling"
evidence=IBA] [GO:0008296 "3'-5'-exodeoxyribonuclease activity"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0006278 "RNA-dependent DNA replication"
evidence=IDA] [GO:0004518 "nuclease activity" evidence=IEA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 SGD:S000002260 GO:GO:0007346 GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 EMBL:BK006938 GO:GO:0051539
GO:GO:0006298 SUPFAM:SSF53098 GO:GO:0006278 GO:GO:0000084
GO:GO:0006301 EMBL:X95644 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
GO:GO:0006272 eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 GeneTree:ENSGT00560000077365
HOGENOM:HOG000036616 OMA:MIEQTKQ GO:GO:0043625 OrthoDB:EOG4B01XB
EMBL:X15477 EMBL:X61920 EMBL:Z74150 PIR:S67644 RefSeq:NP_010181.2
PDB:3IAY PDBsum:3IAY ProteinModelPortal:P15436 SMR:P15436
DIP:DIP-2524N IntAct:P15436 MINT:MINT-2781941 STRING:P15436
PaxDb:P15436 PeptideAtlas:P15436 EnsemblFungi:YDL102W GeneID:851456
KEGG:sce:YDL102W CYGD:YDL102w NextBio:968726 Genevestigator:P15436
GermOnline:YDL102W GO:GO:0008310 Uniprot:P15436
Length = 1097
Score = 1628 (578.1 bits), Expect = 4.5e-233, Sum P(2) = 4.5e-233
Identities = 328/618 (53%), Positives = 429/618 (69%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+KEDVH+SIISDLQNG++ETRRRLAVYCLKDAYLP RL++KLM + NY EMARVTGVP S
Sbjct: 490 QKEDVHYSIISDLQNGDSETRRRLAVYCLKDAYLPLRLMEKLMALVNYTEMARVTGVPFS 549
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVK-QAGSEQGTYEGATVLEARAGFYEKPIATL 518
+LL+RGQ IKV+SQL RK + + VIPN++ QA +Q YEGATV+E G+Y+ PIATL
Sbjct: 550 YLLARGQQIKVVSQLFRKCLEIDTVIPNMQSQASDDQ--YEGATVIEPIRGYYDVPIATL 607
Query: 519 DFASLYPSIMMAYNLCYSTLVTPEDARKLNLP-PECVNKTPSGETFVKSNLQKGXXXXXX 577
DF SLYPSIMMA+NLCY+TL +LNL E TP+G+ FV + ++G
Sbjct: 608 DFNSLYPSIMMAHNLCYTTLCNKATVERLNLKIDEDYVITPNGDYFVTTKRRRGILPIIL 667
Query: 578 XXXXXXXXXXXXXXXXXXXPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSV 637
P ++ VL+GRQLALKISANSVYGFTGATVG+LPC+ ISSSV
Sbjct: 668 DELISARKRAKKDLRDEKDPFKRDVLNGRQLALKISANSVYGFTGATVGKLPCLAISSSV 727
Query: 638 TSYGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAAD 697
T+YGR MI TK V++K+ GY+H+A V+YGDTDSVMV+FG ++ AM LG EAA
Sbjct: 728 TAYGRTMILKTKTAVQEKYCIKNGYKHDAVVVYGDTDSVMVKFGTTDLKEAMDLGTEAAK 787
Query: 698 YISGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVK 757
Y+S F PI LEFEK Y+PYLLI+KKRYAGL+WTNP+KFDK+D KG+ +VRRD+C LV
Sbjct: 788 YVSTLFKHPINLEFEKAYFPYLLINKKRYAGLFWTNPDKFDKLDQKGLASVRRDSCSLVS 847
Query: 758 NLVTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHV 817
++ + L KIL++R++ GA+ +V+ TI+D+L NR+D+S L+I+K L +Y H
Sbjct: 848 IVMNKVLKKILIERNVDGALAFVRETINDILHNRVDISKLIISKTLAP---NYTNPQPHA 904
Query: 818 ELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQ 877
LAERM++R+ PNVGDRV YVII K Y R+EDP++VLENNI +D+ YYL NQ
Sbjct: 905 VLAERMKRREGV-GPNVGDRVDYVIIGG--NDKLYNRAEDPLFVLENNIQVDSRYYLTNQ 961
Query: 878 ISKPLLRIFEPILKNASKELLSGDHTRSISISTPSNSG-IMKFAKRQLSCIGCKALI--S 934
+ P++ I PI+ K+ +SI I+T S G +M F K+ +C CK +
Sbjct: 962 LQNPIISIVAPII--GDKQANGMFVVKSIKINTGSQKGGLMSFIKKVEACKSCKGPLRKG 1019
Query: 935 NGTLCSHCKGREAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYR 994
G LCS+C R ELY K + V++LE + RLWTQCQ C G+LH +VLC++++C IFY
Sbjct: 1020 EGPLCSNCLARSGELYIKALYDVRDLEEKYSRLWTQCQRCAGNLHSEVLCSNKNCDIFYM 1079
Query: 995 RKKAQKDMAEAKLQLDRW 1012
R K +K++ E QL +W
Sbjct: 1080 RVKVKKELQEKVEQLSKW 1097
Score = 643 (231.4 bits), Expect = 4.5e-233, Sum P(2) = 4.5e-233
Identities = 138/353 (39%), Positives = 200/353 (56%)
Query: 52 EDEESLILRDIEQRQDFASRLAKWARPPLSSGYVSQCQSIMFQQLDIDYVIGDSNRELLP 111
E E S + D+ +++ L+ + R L + + I FQQ+D + + + ++
Sbjct: 76 EQELSQMEHDMADQEEHD--LSSFERKKLPTDFDPSLYDISFQQIDAEQSVLNGIKD--- 130
Query: 112 LSSGSAAIIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREAN 171
++ ++R FGVT EGHSV C V GF+ Y Y+ P +D ++ +
Sbjct: 131 --ENTSTVVRFFGVTSEGHSVLCNVTGFKNYLYVPAPNSSDANDQEQINKFVH------Y 182
Query: 172 RNSKVPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRG-IQLDGLG 230
N + IE+V K+SI Y PF KI V P MV R +RG + +
Sbjct: 183 LNETFDHAIDSIEVVSKQSIWGYSGDTKLPFWKIYVTYPHMVNKLRTAFERGHLSFNSWF 242
Query: 231 MKSFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYR--KTAKTLSYCQLEFDCLYSDII 288
TY+ N+ + LR M+DC IVG +WI +P GKY + +S CQLE Y ++I
Sbjct: 243 SNGTTTYD-NIAYTLRLMVDCGIVGMSWITLPKGKYSMIEPNNRVSSCQLEVSINYRNLI 301
Query: 289 SRHPEGEFSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQVANLVTLQGEKQPFIRNVMT 348
+ EG++S AP RI+SFDIECAGR G FPEP +DPVIQ+AN+V++ G K+PFIRNV T
Sbjct: 302 AHPAEGDWSHTAPLRIMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAKKPFIRNVFT 361
Query: 349 LKSCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
L +C+PI G + S TE ++L WR+FI +VDPDV+IGYN FD+PYL+ +
Sbjct: 362 LNTCSPITGSMIFSHATEEEMLSNWRNFIIKVDPDVIIGYNTTNFDIPYLLNR 414
Score = 46 (21.3 bits), Expect = 2.6e-60, Sum P(2) = 2.6e-60
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 368 DVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEKEDVHHSIISDL---QNGN--AETRRR 422
DV +A DF + P +M+ +N+C L E ++ I D NG+ T+RR
Sbjct: 601 DVPIATLDF-NSLYPSIMMAHNLCYTTLCNKATVERLNLKIDEDYVITPNGDYFVTTKRR 659
Query: 423 LAV 425
+
Sbjct: 660 RGI 662
>WB|WBGene00008645 [details] [associations]
symbol:F10C2.4 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0035188 "hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0009792 GO:GO:0035188 GO:GO:0006898
GO:GO:0007346 GO:GO:0002119 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0051539 GO:GO:0000910 SUPFAM:SSF53098
GO:GO:0000084 GO:GO:0008408 GO:GO:0043137 GO:GO:0003887
GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 EMBL:Z81497 PIR:T20698
RefSeq:NP_506017.1 ProteinModelPortal:P90829 SMR:P90829
STRING:P90829 PaxDb:P90829 EnsemblMetazoa:F10C2.4 GeneID:179652
KEGG:cel:CELE_F10C2.4 UCSC:F10C2.4 CTD:179652 WormBase:F10C2.4
GeneTree:ENSGT00560000077365 HOGENOM:HOG000036616 InParanoid:P90829
OMA:MIEQTKQ NextBio:906306 GO:GO:0043625 Uniprot:P90829
Length = 1081
Score = 1677 (595.4 bits), Expect = 2.1e-228, Sum P(2) = 2.1e-228
Identities = 337/650 (51%), Positives = 451/650 (69%)
Query: 375 DFIREVDPDVMI-GYNICKFDLPYLIE-KEDVHHSIISDLQNGNAETRRRLAVYCLKDAY 432
D ++ V D + Y + +L E KEDV H+II DLQ G+ +TRRRLA YCLKDAY
Sbjct: 428 DVLQVVLRDYKLRSYTLNSVSYQFLSEQKEDVEHNIIPDLQRGDEQTRRRLAQYCLKDAY 487
Query: 433 LPQRLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNVK-QA 491
LP RLLDKLM I NY+EMARVTGVP++FLL++GQ IK+LS +LR+ KQ N +P ++ +
Sbjct: 488 LPLRLLDKLMSIINYIEMARVTGVPMNFLLTKGQQIKILSMMLRRCKQNNFFLPVIEANS 547
Query: 492 GSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLV-TPEDARKLNLP 550
G +G YEGATV++ GFY +PIATLDFASLYPSIM+A+NLCY+TL+ +P+
Sbjct: 548 GDGEG-YEGATVIDPIRGFYNEPIATLDFASLYPSIMIAHNLCYTTLLKSPQGVEN---- 602
Query: 551 PECVNKTPSGETFVKSNLQKGXXXXXXXXXXXXXXXXXXXXXXXXXPLEKAVLDGRQLAL 610
E +TPSG+ F + ++G ++ V +GRQLAL
Sbjct: 603 -EDYIRTPSGQYFATKSKRRGLLPEILEDILAARKRAKNDMKNEKDEFKRMVYNGRQLAL 661
Query: 611 KISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVE---DKFTTVGGYEHNAE 667
KISANSVYGFTGATVG+LPC+EIS SVT++GR+MI+ TK VE K G +A+
Sbjct: 662 KISANSVYGFTGATVGKLPCLEISQSVTAFGRKMIDMTKLEVERIYKKGALDGKCPADAK 721
Query: 668 VIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLLISKKRYA 727
VIYGDTDSVMV+FGV TV AM++G +AA +S F PIKLEFEKVY PYLLI+KKRYA
Sbjct: 722 VIYGDTDSVMVKFGVETVAQAMEIGLDAAKEVSKIFTPPIKLEFEKVYSPYLLINKKRYA 781
Query: 728 GLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQYVKSTISDL 787
GLY+T P+ DKMD KG+ETVRRDNC LV ++ CL K+L++RD A+ + K TISDL
Sbjct: 782 GLYFTKPDVHDKMDCKGLETVRRDNCPLVAKVLGVCLEKLLIERDQQSALDFAKRTISDL 841
Query: 788 LMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAK 847
L N++D+SLL+I+K LTK+GD Y+ K AHVELA RM+KRDA +AP +GDRVPYV + AAK
Sbjct: 842 LCNKIDISLLIISKELTKSGDKYQAKQAHVELAARMKKRDAGSAPRLGDRVPYVFVAAAK 901
Query: 848 GAKAYERSEDPIYVLENNIPIDTHYYLENQISKPLLRIFEPILKN-ASKELLSGDHTRSI 906
AYER+EDP +VL+NNIP+DT +YL NQ++KPL RIFEPIL + A K L+ G+HTR
Sbjct: 902 NVPAYERAEDPTFVLQNNIPLDTKHYLTNQLAKPLARIFEPILGDRAEKILVEGEHTRVR 961
Query: 907 SISTPSNSGIMKFAKRQLSCIGCKALI----SNGTLCSHCKGREAELYCKTVSQVQELEV 962
++ G+ F + +C+GCK+++ S +C HC+ + ++ ++ + ELE
Sbjct: 962 TVVQSKVGGLAAFTTKSATCLGCKSVLPRAESENAVCKHCEPKLPTIFASRMNTMHELEN 1021
Query: 963 LFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKLQLDRW 1012
FGRLWT+CQ C ++ V C++RDCPI+Y R+K + +++EA ++R+
Sbjct: 1022 HFGRLWTECQNCAKTMQDKVNCSARDCPIYYMREKVRNELSEASAVIERF 1071
Score = 550 (198.7 bits), Expect = 2.1e-228, Sum P(2) = 2.1e-228
Identities = 120/343 (34%), Positives = 190/343 (55%)
Query: 75 WARPPLSSGYVSQCQSIMFQQLDIDYVIGDSNRELLPLSSGSAAIIRIFGVTREGHSVCC 134
WARP + + +SI Q L+++ D + +S ++++GVT+ G+S+C
Sbjct: 47 WARPAVDKD-LGISKSIACQILEVETYHEDGSA-----TSYDRTNVKLYGVTKSGNSICV 100
Query: 135 KVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANRNS---------KVPQFVRHIEM 185
V + P+FY PQG G + I + + A R KV + H+E+
Sbjct: 101 IVTDYFPHFYFQAPQGFGVEHIGTAQSAICNMVAAAKRRGGSGQAQLPGKVVDNLVHVEI 160
Query: 186 VQKRSIMYYQQQKSQ-PFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFMT-YESNVLF 243
V ++ Y++ ++ PF+K+ + + R L G+ L G G + YESN+
Sbjct: 161 VHGENLYYFRGADTKVPFVKVSGSTEAL-HKARMELKNGVNLMGKGPVNVGNLYESNINV 219
Query: 244 ALRFMIDCNIVGGNWIEVPVGKYR--KTAKTLSYCQLEFDCLYSDIISRHPEGEFSKMAP 301
+ F+ NIVG WIE+P GK R ++ S CQ+E ++I +GE++ +AP
Sbjct: 220 IVMFLAKTNIVGCGWIEIPAGKCRILSNSEKSSRCQIEVTVPVKNLIVHESDGEWAGIAP 279
Query: 302 FRILSFDIECAGRKGHFPEPTHDPVIQVANLVTLQGEKQPFIRNVMTLKSCAPIVGVDVM 361
R LS DIEC GR+G FPE DP+IQ+ANLV ++GE +PF+RN L +CAP+VG +++
Sbjct: 280 IRTLSLDIECIGRRGVFPEAIKDPIIQIANLVKIEGEAEPFVRNCFVLGTCAPVVGSNII 339
Query: 362 SFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEKEDV 404
E+ +L W +F+REVDPD++ GYNI FDLPY++++ V
Sbjct: 340 QCVNEKVLLEKWAEFVREVDPDIITGYNILNFDLPYILDRAKV 382
>UNIPROTKB|P90829 [details] [associations]
symbol:F10C2.4 "DNA polymerase delta catalytic subunit"
species:6239 "Caenorhabditis elegans" [GO:0045004 "DNA replication
proofreading" evidence=IBA] [GO:0043625 "delta DNA polymerase
complex" evidence=IBA] [GO:0043137 "DNA replication, removal of RNA
primer" evidence=IBA] [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0006287 "base-excision repair,
gap-filling" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IBA]
[GO:0000084 "S phase of mitotic cell cycle" evidence=IBA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0009792 GO:GO:0035188 GO:GO:0006898
GO:GO:0007346 GO:GO:0002119 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0051539 GO:GO:0000910 SUPFAM:SSF53098
GO:GO:0000084 GO:GO:0008408 GO:GO:0043137 GO:GO:0003887
GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 EMBL:Z81497 PIR:T20698
RefSeq:NP_506017.1 ProteinModelPortal:P90829 SMR:P90829
STRING:P90829 PaxDb:P90829 EnsemblMetazoa:F10C2.4 GeneID:179652
KEGG:cel:CELE_F10C2.4 UCSC:F10C2.4 CTD:179652 WormBase:F10C2.4
GeneTree:ENSGT00560000077365 HOGENOM:HOG000036616 InParanoid:P90829
OMA:MIEQTKQ NextBio:906306 GO:GO:0043625 Uniprot:P90829
Length = 1081
Score = 1677 (595.4 bits), Expect = 2.1e-228, Sum P(2) = 2.1e-228
Identities = 337/650 (51%), Positives = 451/650 (69%)
Query: 375 DFIREVDPDVMI-GYNICKFDLPYLIE-KEDVHHSIISDLQNGNAETRRRLAVYCLKDAY 432
D ++ V D + Y + +L E KEDV H+II DLQ G+ +TRRRLA YCLKDAY
Sbjct: 428 DVLQVVLRDYKLRSYTLNSVSYQFLSEQKEDVEHNIIPDLQRGDEQTRRRLAQYCLKDAY 487
Query: 433 LPQRLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNVK-QA 491
LP RLLDKLM I NY+EMARVTGVP++FLL++GQ IK+LS +LR+ KQ N +P ++ +
Sbjct: 488 LPLRLLDKLMSIINYIEMARVTGVPMNFLLTKGQQIKILSMMLRRCKQNNFFLPVIEANS 547
Query: 492 GSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLV-TPEDARKLNLP 550
G +G YEGATV++ GFY +PIATLDFASLYPSIM+A+NLCY+TL+ +P+
Sbjct: 548 GDGEG-YEGATVIDPIRGFYNEPIATLDFASLYPSIMIAHNLCYTTLLKSPQGVEN---- 602
Query: 551 PECVNKTPSGETFVKSNLQKGXXXXXXXXXXXXXXXXXXXXXXXXXPLEKAVLDGRQLAL 610
E +TPSG+ F + ++G ++ V +GRQLAL
Sbjct: 603 -EDYIRTPSGQYFATKSKRRGLLPEILEDILAARKRAKNDMKNEKDEFKRMVYNGRQLAL 661
Query: 611 KISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVE---DKFTTVGGYEHNAE 667
KISANSVYGFTGATVG+LPC+EIS SVT++GR+MI+ TK VE K G +A+
Sbjct: 662 KISANSVYGFTGATVGKLPCLEISQSVTAFGRKMIDMTKLEVERIYKKGALDGKCPADAK 721
Query: 668 VIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLLISKKRYA 727
VIYGDTDSVMV+FGV TV AM++G +AA +S F PIKLEFEKVY PYLLI+KKRYA
Sbjct: 722 VIYGDTDSVMVKFGVETVAQAMEIGLDAAKEVSKIFTPPIKLEFEKVYSPYLLINKKRYA 781
Query: 728 GLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQYVKSTISDL 787
GLY+T P+ DKMD KG+ETVRRDNC LV ++ CL K+L++RD A+ + K TISDL
Sbjct: 782 GLYFTKPDVHDKMDCKGLETVRRDNCPLVAKVLGVCLEKLLIERDQQSALDFAKRTISDL 841
Query: 788 LMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAK 847
L N++D+SLL+I+K LTK+GD Y+ K AHVELA RM+KRDA +AP +GDRVPYV + AAK
Sbjct: 842 LCNKIDISLLIISKELTKSGDKYQAKQAHVELAARMKKRDAGSAPRLGDRVPYVFVAAAK 901
Query: 848 GAKAYERSEDPIYVLENNIPIDTHYYLENQISKPLLRIFEPILKN-ASKELLSGDHTRSI 906
AYER+EDP +VL+NNIP+DT +YL NQ++KPL RIFEPIL + A K L+ G+HTR
Sbjct: 902 NVPAYERAEDPTFVLQNNIPLDTKHYLTNQLAKPLARIFEPILGDRAEKILVEGEHTRVR 961
Query: 907 SISTPSNSGIMKFAKRQLSCIGCKALI----SNGTLCSHCKGREAELYCKTVSQVQELEV 962
++ G+ F + +C+GCK+++ S +C HC+ + ++ ++ + ELE
Sbjct: 962 TVVQSKVGGLAAFTTKSATCLGCKSVLPRAESENAVCKHCEPKLPTIFASRMNTMHELEN 1021
Query: 963 LFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKLQLDRW 1012
FGRLWT+CQ C ++ V C++RDCPI+Y R+K + +++EA ++R+
Sbjct: 1022 HFGRLWTECQNCAKTMQDKVNCSARDCPIYYMREKVRNELSEASAVIERF 1071
Score = 550 (198.7 bits), Expect = 2.1e-228, Sum P(2) = 2.1e-228
Identities = 120/343 (34%), Positives = 190/343 (55%)
Query: 75 WARPPLSSGYVSQCQSIMFQQLDIDYVIGDSNRELLPLSSGSAAIIRIFGVTREGHSVCC 134
WARP + + +SI Q L+++ D + +S ++++GVT+ G+S+C
Sbjct: 47 WARPAVDKD-LGISKSIACQILEVETYHEDGSA-----TSYDRTNVKLYGVTKSGNSICV 100
Query: 135 KVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANRNS---------KVPQFVRHIEM 185
V + P+FY PQG G + I + + A R KV + H+E+
Sbjct: 101 IVTDYFPHFYFQAPQGFGVEHIGTAQSAICNMVAAAKRRGGSGQAQLPGKVVDNLVHVEI 160
Query: 186 VQKRSIMYYQQQKSQ-PFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFMT-YESNVLF 243
V ++ Y++ ++ PF+K+ + + R L G+ L G G + YESN+
Sbjct: 161 VHGENLYYFRGADTKVPFVKVSGSTEAL-HKARMELKNGVNLMGKGPVNVGNLYESNINV 219
Query: 244 ALRFMIDCNIVGGNWIEVPVGKYR--KTAKTLSYCQLEFDCLYSDIISRHPEGEFSKMAP 301
+ F+ NIVG WIE+P GK R ++ S CQ+E ++I +GE++ +AP
Sbjct: 220 IVMFLAKTNIVGCGWIEIPAGKCRILSNSEKSSRCQIEVTVPVKNLIVHESDGEWAGIAP 279
Query: 302 FRILSFDIECAGRKGHFPEPTHDPVIQVANLVTLQGEKQPFIRNVMTLKSCAPIVGVDVM 361
R LS DIEC GR+G FPE DP+IQ+ANLV ++GE +PF+RN L +CAP+VG +++
Sbjct: 280 IRTLSLDIECIGRRGVFPEAIKDPIIQIANLVKIEGEAEPFVRNCFVLGTCAPVVGSNII 339
Query: 362 SFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEKEDV 404
E+ +L W +F+REVDPD++ GYNI FDLPY++++ V
Sbjct: 340 QCVNEKVLLEKWAEFVREVDPDIITGYNILNFDLPYILDRAKV 382
>UNIPROTKB|E1BNZ6 [details] [associations]
symbol:E1BNZ6 "DNA polymerase" species:9913 "Bos taurus"
[GO:0045004 "DNA replication proofreading" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IEA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=IEA] [GO:0000109 "nucleotide-excision repair
complex" evidence=IEA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0003682
SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408 GO:GO:0000731
GO:GO:0003887 GO:GO:0006297 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 IPI:IPI00706072
GeneTree:ENSGT00560000077365 OMA:MIEQTKQ GO:GO:0000109
EMBL:DAAA02047499 EMBL:DAAA02047500 Ensembl:ENSBTAT00000014714
Uniprot:E1BNZ6
Length = 984
Score = 1565 (556.0 bits), Expect = 1.4e-227, Sum P(2) = 1.4e-227
Identities = 309/498 (62%), Positives = 382/498 (76%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+KEDV HSII+DLQNGN +TRRRLAVYCLKDA+LP RLL++LM + N +EMARVTGVP+
Sbjct: 484 QKEDVQHSIITDLQNGNDQTRRRLAVYCLKDAFLPLRLLERLMVLVNAMEMARVTGVPLG 543
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLD 519
+LLSRGQ +KV+SQLLR+A ++ L++P VK G E Y GATV+E G+Y+ PIATLD
Sbjct: 544 YLLSRGQQVKVVSQLLRQAMRQGLLMPVVKTEGGED--YTGATVIEPLKGYYDVPIATLD 601
Query: 520 FASLYPSIMMAYNLCYSTLVTPEDARKLNLPPECVNKTPSGETFVKSNLQKGXXXXXXXX 579
F+SLYPSIMMA+NLCY+TL+ P A+KL L + KTP+G+ FVK++++KG
Sbjct: 602 FSSLYPSIMMAHNLCYTTLLRPGAAQKLGLTEDQFIKTPTGDEFVKASVRKGLLPQILEN 661
Query: 580 XXXXXXXXXXXXXXXXXPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTS 639
PL + VLDGRQLALK+SANSVYGFTGA VG+LPC+EIS SVT
Sbjct: 662 LLSARKRAKAELAKETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGRLPCLEISQSVTG 721
Query: 640 YGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYI 699
+GRQMIE TK+LVE K+T GY +A+V+YGDTDSVM +FGV +V AM LGREAAD++
Sbjct: 722 FGRQMIEKTKQLVETKYTVENGYSTSAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWV 781
Query: 700 SGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTN-PEKFDKMDTKGIETVRRDNCLLVKN 758
SG F PI+LEFEKVY+PYLLISKKRYAGL +++ P+ D+MD KG+E VRRDNC LV N
Sbjct: 782 SGHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSSRPDAHDRMDCKGLEAVRRDNCPLVAN 841
Query: 759 LVTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVE 818
LVT L ++L+DRD GAV + + ISDLL NR+D+S LVITK LT+ DY K AHVE
Sbjct: 842 LVTASLRRLLIDRDPSGAVAHAQDVISDLLCNRIDISQLVITKELTRAAADYAGKQAHVE 901
Query: 819 LAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQI 878
LAERMRKRD +AP++GDRVPYVII AAKG AY +SEDP++VLE+++PIDT YYLE Q+
Sbjct: 902 LAERMRKRDPGSAPSLGDRVPYVIISAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQL 961
Query: 879 SKPLLRIFEPILKNASKE 896
+KPLLRIFEPIL E
Sbjct: 962 AKPLLRIFEPILGEGRAE 979
Score = 654 (235.3 bits), Expect = 1.4e-227, Sum P(2) = 1.4e-227
Identities = 147/341 (43%), Positives = 200/341 (58%)
Query: 73 AKWARPPLSSGYVSQCQSIMFQQLDIDYVIGDSNRELL---PLSSGSAAIIRIFGVTREG 129
A+W RPP Q + ++FQQL+ID+ + + R L P S S I+R FGVT EG
Sbjct: 76 ARWLRPP-PPALDPQMEPLIFQQLEIDHYVAPA-RPLPGAPPPSQDSVPILRAFGVTDEG 133
Query: 130 HSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANRNSK--VPQFVRHIEMVQ 187
SVCC +HGF PYFY P G GP+ +S + L + R K V +E+
Sbjct: 134 VSVCCHIHGFAPYFYTPAPPGFGPEHLSELQRELSAAISRDQRGGKELTGPAVLAVELCS 193
Query: 188 KRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFMTYESNVLFALRF 247
+ S+ Y PFL+I +ALP ++A R +L++GI+L GLG SF YE+NV F +RF
Sbjct: 194 RESMFGYHGHGPSPFLRITLALPRLMAPARRLLEQGIRLAGLGTPSFAPYEANVDFEIRF 253
Query: 248 MIDCNIVGGNWIEVPVGKY--RKTAKTLSYCQLEFDCLYSDIISRHPEGEFSKMAPFRIL 305
M+D +IVG NW+E+P GKY R K + CQLE D L+SD+IS PEGE+ ++AP R+L
Sbjct: 254 MVDTDIVGCNWLELPAGKYILRPEGKA-TLCQLEADVLWSDVISHPPEGEWQRIAPLRVL 312
Query: 306 SFDIECAGRKGHFPEPTHDPVIQVANLVTLQGEKQP-----FIRNVMTLKSCAPIVGVDV 360
SFDIECAGRKG P P V+ + ++ G + P F R++ +L S ++G
Sbjct: 313 SFDIECAGRKGLSPGPG---VLPPSFPTSVMGPRFPLWIPYFQRHLPSLPSMVLLLGASR 369
Query: 361 MSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
S + AW FIR +DPDV+ GYNI FDLPYLI +
Sbjct: 370 TSQDWGGPT--AWSTFIRIMDPDVITGYNIQNFDLPYLISR 408
>UNIPROTKB|Q7RSZ8 [details] [associations]
symbol:PY00203 "DNA polymerase" species:73239 "Plasmodium
yoelii yoelii" [GO:0000084 "S phase of mitotic cell cycle"
evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0006287
"base-excision repair, gap-filling" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0043137
"DNA replication, removal of RNA primer" evidence=IBA] [GO:0043625
"delta DNA polymerase complex" evidence=IBA] [GO:0045004 "DNA
replication proofreading" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0043137 GO:GO:0003887 GO:GO:0006297 eggNOG:COG0417
GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687 Pfam:PF14260
GO:GO:0043625 EMBL:AABL01000054 RefSeq:XP_729844.1
ProteinModelPortal:Q7RSZ8 STRING:Q7RSZ8 PRIDE:Q7RSZ8 GeneID:3807142
KEGG:pyo:PY00203 EuPathDB:PlasmoDB:PY00203 Uniprot:Q7RSZ8
Length = 1097
Score = 1674 (594.3 bits), Expect = 2.6e-226, Sum P(3) = 2.6e-226
Identities = 326/614 (53%), Positives = 436/614 (71%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+KEDVH+SI++DLQN N+E+R+R+A YC+KD LP RL+DKL+FI+NYVEMARVTG P
Sbjct: 482 QKEDVHYSIMNDLQNENSESRKRIATYCIKDGLLPLRLIDKLLFIYNYVEMARVTGTPFV 541
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLD 519
+LL+RGQ IKV SQL RK K+ N +IP+ + +EGATVLE G+Y +PI+TLD
Sbjct: 542 YLLTRGQQIKVTSQLYRKCKELNYIIPSTYIKVNNNDKFEGATVLEPIKGYYIEPISTLD 601
Query: 520 FASLYPSIMMAYNLCYSTLVTPEDARKLNLPPECVNKTPSGETF--VKSNLQKGXXXXXX 577
FASLYPSIM+A+NLCYSTL+ D +L + P F VK N+++G
Sbjct: 602 FASLYPSIMIAHNLCYSTLIKNNDEIS-DLNKNDITTVPGKNNFKFVKGNVKRGVLPLIV 660
Query: 578 XXXXXXXXXXXXXXXXXXXPLEKAVLDGRQLALKISANSVYGFTGATVG-QLPCIEISSS 636
P+ K VL+GRQLALKISANSVYG+TGA G QLPC+EI++S
Sbjct: 661 EELIRARKNVKAMMKNEQNPITKMVLNGRQLALKISANSVYGYTGAAAGGQLPCLEIATS 720
Query: 637 VTSYGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAA 696
+T++GR MIE TK+ VE + G+EHNA V+YGDTDSVMV+FG V AM+LG++AA
Sbjct: 721 ITTFGRSMIEKTKETVEAYYCKNNGFEHNATVVYGDTDSVMVKFGTNDVGEAMRLGKDAA 780
Query: 697 DYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLV 756
+ IS F+ PIKLEFEKVY PYLL++KKRYAGL +TNP K DKMD KGIETVRRD C+L+
Sbjct: 781 ERISKEFLHPIKLEFEKVYCPYLLLNKKRYAGLLYTNPNKHDKMDCKGIETVRRDFCILI 840
Query: 757 KNLVTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAH 816
+ ++ L+K+L+++D+ A++Y KS I DLL N +D+SLLV+TK L K +YE + H
Sbjct: 841 QQMMETVLNKLLIEKDLNSAIEYTKSKIKDLLTNNIDMSLLVVTKSLGKA--EYETRLPH 898
Query: 817 VELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLEN 876
VELA+++++RD+ATAPNVGDRV Y+IIK KG YER+EDP+YVL+NN+ ID ++YL+
Sbjct: 899 VELAKKLKQRDSATAPNVGDRVSYIIIKGTKGQAQYERAEDPLYVLDNNLSIDHNHYLD- 957
Query: 877 QISKPLLRIFEPILKNASKELLSGDHTRSISISTPSNSGIMKFAKRQLSCIGCKALISNG 936
I PL RIFE I++N S L G+HTR +I T S + + KF K+ + CIGC + I
Sbjct: 958 AIKNPLSRIFEVIMQN-SDSLFCGEHTRHKTILTSSQTALSKFLKKTIRCIGCNSSIKKP 1016
Query: 937 TLCSHCK-GREAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRR 995
LC+HCK +E +Y + + ++ + F +LWT+CQ CQG+LH DV+C +RDCPIFYRR
Sbjct: 1017 PLCNHCKTNKEFSIYMQKIKDLKLKQNEFFQLWTECQRCQGNLHIDVICMNRDCPIFYRR 1076
Query: 996 KKAQKDMAEAKLQL 1009
K +KD+A + Q+
Sbjct: 1077 AKIKKDVANLQEQV 1090
Score = 507 (183.5 bits), Expect = 2.6e-226, Sum P(3) = 2.6e-226
Identities = 111/292 (38%), Positives = 160/292 (54%)
Query: 116 SAAIIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANRNSK 175
S IIRI+ +T G+SV VH F PYFY+ P G DD+ +L + N+
Sbjct: 118 SVPIIRIYSITNCGYSVVVNVHNFFPYFYVEKPNGFNNDDMIKLESMLNETLSLNNQFKM 177
Query: 176 VPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSF- 234
+ IE V+ SIMY+++ FLKI V LP MV S + + GI ++ K F
Sbjct: 178 YENKILKIETVKTESIMYFKKSGKTDFLKITVLLPKMVPSLKKFFESGINVNS---KHFG 234
Query: 235 -MTYESNVLFALRFMIDCNIVGGNWIEVPVGKY--RKTAKTLSYCQLEFDCLYSDIISRH 291
+ YE+N+ F LR++ID I G +WI+ Y R K S C E D Y +I
Sbjct: 235 GIVYEANLPFILRYIIDKKITGSSWIKCEKNSYIIRSKNKQSSNCTFEIDIHYENIEPMA 294
Query: 292 PEGEFSKMAPFRILSFDIECAGRKGH-FPEPTHDPVIQVANLVTLQGEK-QPFIRNVMTL 349
E E+ K+ RILSFDIEC G FPE DP+IQ+++++ LQG+ + + + TL
Sbjct: 295 LENEYQKIPKLRILSFDIECIKLDGKGFPEAKTDPIIQISSILYLQGDPIENCAKFIFTL 354
Query: 350 KSCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
CA I G +V+ F E+ +L AW +F+ +DPD + GYNI FD+PY++ +
Sbjct: 355 LECASIPGSNVIWFNDEKTMLEAWNEFVIRIDPDFLTGYNIINFDIPYILNR 406
Score = 43 (20.2 bits), Expect = 2.6e-226, Sum P(3) = 2.6e-226
Identities = 20/82 (24%), Positives = 36/82 (43%)
Query: 66 QDFASRLAKWARP-PLSSG----YVSQCQSIMFQQLDIDYVIGDSNRELLPLSSGSAAII 120
+++ L + RP P S + + I+FQ +D+DY + + R ++ + GS
Sbjct: 37 EEYEKLLKTYERPNPYDSNGSLKFNNNDDLILFQ-IDLDYTVENIFRNVIYNNEGS---- 91
Query: 121 RIFGVTREGHSVCCKVHGFEPY 142
T S C + +EPY
Sbjct: 92 -----TNNSDSKCNSI--YEPY 106
Score = 41 (19.5 bits), Expect = 6.1e-44, Sum P(3) = 6.1e-44
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 382 PDVMIGYNICKFDLPYLIEKEDVHHSIISDLQNGNAET 419
P +MI +N+C LI+ D ISDL + T
Sbjct: 607 PSIMIAHNLC---YSTLIKNNDE----ISDLNKNDITT 637
>GENEDB_PFALCIPARUM|PF10_0165 [details] [associations]
symbol:PF10_0165 "DNA polymerase delta
catalytic subunit" species:5833 "Plasmodium falciparum" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0043625
"delta DNA polymerase complex" evidence=ISS] [GO:0008310
"single-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=ISS] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 EMBL:AE014185 GO:GO:0003887
Gene3D:3.90.1600.10 InterPro:IPR023211 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616 OMA:MIEQTKQ
GO:GO:0043625 ProtClustDB:PTZ00166 GO:GO:0008310
RefSeq:XP_001347450.1 ProteinModelPortal:Q7KQL4
EnsemblProtists:PF10_0165:mRNA GeneID:810323 KEGG:pfa:PF10_0165
EuPathDB:PlasmoDB:PF3D7_1017000 Uniprot:Q7KQL4
Length = 1094
Score = 1667 (591.9 bits), Expect = 7.9e-223, Sum P(3) = 7.9e-223
Identities = 326/613 (53%), Positives = 434/613 (70%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+KEDVH+SI++DLQN + E+R+R+A YC+KD LP RL+DKL+FI+NYVEMARVTG P
Sbjct: 479 QKEDVHYSIMNDLQNESPESRKRIATYCIKDGVLPLRLIDKLLFIYNYVEMARVTGTPFV 538
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLD 519
+LL+RGQ IKV SQL RK K+ N VIP+ + YEGATVLE G+Y +PI+TLD
Sbjct: 539 YLLTRGQQIKVTSQLYRKCKELNYVIPSTYMKVNTNEKYEGATVLEPIKGYYIEPISTLD 598
Query: 520 FASLYPSIMMAYNLCYSTLV-TPEDARKLNLPPECVNKTPSGETFVKSNLQKGXXXXXXX 578
FASLYPSIM+A+NLCYSTL+ + + L + + FVK N++KG
Sbjct: 599 FASLYPSIMIAHNLCYSTLIKSNHEVSDLQNDDITTIQGKNNLKFVKKNVKKGILPLIVE 658
Query: 579 XXXXXXXXXXXXXXXXXXPLEKAVLDGRQLALKISANSVYGFTGATVG-QLPCIEISSSV 637
+ K VL+GRQLALKISANSVYG+TGA+ G QLPC+E++ S+
Sbjct: 659 ELIEARKKVKLLIKNEKNNITKMVLNGRQLALKISANSVYGYTGASSGGQLPCLEVAVSI 718
Query: 638 TSYGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAAD 697
T+ GR MIE TK+ VE + GYEHN+ VIYGDTDSVMV+FG +E AM LG++AA+
Sbjct: 719 TTLGRSMIEKTKERVESFYCKSNGYEHNSTVIYGDTDSVMVKFGTNNIEEAMTLGKDAAE 778
Query: 698 YISGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVK 757
IS F+ PIKLEFEKVY PYLL++KKRYAGL +TNP K DKMD KGIETVRRD C+L++
Sbjct: 779 RISKEFLSPIKLEFEKVYCPYLLLNKKRYAGLLYTNPNKHDKMDCKGIETVRRDFCILIQ 838
Query: 758 NLVTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHV 817
++ L+K+L+++++ A++Y KS I +LL N +D+SLLV+TK L KT DYE + HV
Sbjct: 839 QMMETVLNKLLIEKNLNSAIEYTKSKIKELLTNNIDMSLLVVTKSLGKT--DYETRLPHV 896
Query: 818 ELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQ 877
ELA+++++RD+ATAPNVGDRV Y+I+K KG YER+EDP+YVL+NN+ ID ++YL+
Sbjct: 897 ELAKKLKQRDSATAPNVGDRVSYIIVKGVKGQAQYERAEDPLYVLDNNLAIDYNHYLD-A 955
Query: 878 ISKPLLRIFEPILKNASKELLSGDHTRSISISTPSNSGIMKFAKRQLSCIGCKALISNGT 937
I PL RIFE I++N S L SGDHTR +I T S + + KF K+ + CIGC + I
Sbjct: 956 IKSPLSRIFEVIMQN-SDSLFSGDHTRHKTILTSSQTALSKFLKKSVRCIGCNSSIKKPP 1014
Query: 938 LCSHCK-GREAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRK 996
LC+HCK +E +Y + + + + F +LWT+CQ CQG+LH DV+C +RDCPIFYRR
Sbjct: 1015 LCNHCKENKEFSIYMQKIKDFKNKQNEFFQLWTECQRCQGNLHVDVICMNRDCPIFYRRA 1074
Query: 997 KAQKDMAEAKLQL 1009
K +KD+A + Q+
Sbjct: 1075 KIKKDIANLQEQV 1087
Score = 482 (174.7 bits), Expect = 7.9e-223, Sum P(3) = 7.9e-223
Identities = 104/291 (35%), Positives = 160/291 (54%)
Query: 116 SAAIIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANRNSK 175
S IIRI+ + ++G SV VH F PYFY+ P +D+ ++ + N K
Sbjct: 115 SVPIIRIYSLRKDGCSVLINVHNFFPYFYVEKPDDFDNEDLIKLEMLMNENLN-LNSQYK 173
Query: 176 V-PQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSF 234
+ + + IE+V+ S+MY+++ + FLKI V LP MV S + + + ++ +
Sbjct: 174 IYEKKILKIEIVKTESLMYFKKNGKKDFLKITVLLPKMVPSLKKYFEGIVHVNNKSIGGI 233
Query: 235 MTYESNVLFALRFMIDCNIVGGNWIEVPVGKY--RKTAKTLSYCQLEFDCLYSDIISRHP 292
+ YE+N+ F LR++ID I G +WI G Y R K +S C E D Y +
Sbjct: 234 V-YEANLPFILRYIIDHKITGSSWINCKKGHYYIRNKNKKISNCTFEIDISYEHVEPITL 292
Query: 293 EGEFSKMAPFRILSFDIECAGRKGH-FPEPTHDPVIQVANLVTLQGEK-QPFIRNVMTLK 350
E E+ ++ RILSFDIEC G FPE +DP+IQ+++++ QGE + + TL
Sbjct: 293 ENEYQQIPKLRILSFDIECIKLDGKGFPEAKNDPIIQISSILYFQGEPIDNCTKFIFTLL 352
Query: 351 SCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
CA I G +V+ F E+ +L AW +FI +DPD + GYNI FDLPY++ +
Sbjct: 353 ECASIPGSNVIWFNDEKTLLEAWNEFIIRIDPDFLTGYNIINFDLPYILNR 403
Score = 48 (22.0 bits), Expect = 1.0e-41, Sum P(3) = 1.0e-41
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 382 PDVMIGYNICKFDLPYLIEKEDVHHSIISDLQNGNAET 419
P +MI +N+C LI+ +H + SDLQN + T
Sbjct: 604 PSIMIAHNLC---YSTLIKS---NHEV-SDLQNDDITT 634
Score = 42 (19.8 bits), Expect = 7.9e-223, Sum P(3) = 7.9e-223
Identities = 11/55 (20%), Positives = 26/55 (47%)
Query: 66 QDFASRLAKWARP----PLSSGYVSQCQSIMFQQLDIDYVIGDSNRELLPLSSGS 116
++F L + RP + + + ++ Q+D+DY + + + ++ SGS
Sbjct: 37 EEFDKLLKNYERPNVYDEIGNATFKNDEDLITFQIDLDYTVENIFKNMIYNESGS 91
>UNIPROTKB|Q7KQL4 [details] [associations]
symbol:PF10_0165 "DNA polymerase" species:36329 "Plasmodium
falciparum 3D7" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0008310 "single-stranded DNA specific 3'-5'
exodeoxyribonuclease activity" evidence=ISS] [GO:0043625 "delta DNA
polymerase complex" evidence=ISS] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098 EMBL:AE014185
GO:GO:0003887 Gene3D:3.90.1600.10 InterPro:IPR023211
TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687 Pfam:PF14260
HOGENOM:HOG000036616 OMA:MIEQTKQ GO:GO:0043625 ProtClustDB:PTZ00166
GO:GO:0008310 RefSeq:XP_001347450.1 ProteinModelPortal:Q7KQL4
EnsemblProtists:PF10_0165:mRNA GeneID:810323 KEGG:pfa:PF10_0165
EuPathDB:PlasmoDB:PF3D7_1017000 Uniprot:Q7KQL4
Length = 1094
Score = 1667 (591.9 bits), Expect = 7.9e-223, Sum P(3) = 7.9e-223
Identities = 326/613 (53%), Positives = 434/613 (70%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+KEDVH+SI++DLQN + E+R+R+A YC+KD LP RL+DKL+FI+NYVEMARVTG P
Sbjct: 479 QKEDVHYSIMNDLQNESPESRKRIATYCIKDGVLPLRLIDKLLFIYNYVEMARVTGTPFV 538
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLD 519
+LL+RGQ IKV SQL RK K+ N VIP+ + YEGATVLE G+Y +PI+TLD
Sbjct: 539 YLLTRGQQIKVTSQLYRKCKELNYVIPSTYMKVNTNEKYEGATVLEPIKGYYIEPISTLD 598
Query: 520 FASLYPSIMMAYNLCYSTLV-TPEDARKLNLPPECVNKTPSGETFVKSNLQKGXXXXXXX 578
FASLYPSIM+A+NLCYSTL+ + + L + + FVK N++KG
Sbjct: 599 FASLYPSIMIAHNLCYSTLIKSNHEVSDLQNDDITTIQGKNNLKFVKKNVKKGILPLIVE 658
Query: 579 XXXXXXXXXXXXXXXXXXPLEKAVLDGRQLALKISANSVYGFTGATVG-QLPCIEISSSV 637
+ K VL+GRQLALKISANSVYG+TGA+ G QLPC+E++ S+
Sbjct: 659 ELIEARKKVKLLIKNEKNNITKMVLNGRQLALKISANSVYGYTGASSGGQLPCLEVAVSI 718
Query: 638 TSYGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAAD 697
T+ GR MIE TK+ VE + GYEHN+ VIYGDTDSVMV+FG +E AM LG++AA+
Sbjct: 719 TTLGRSMIEKTKERVESFYCKSNGYEHNSTVIYGDTDSVMVKFGTNNIEEAMTLGKDAAE 778
Query: 698 YISGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVK 757
IS F+ PIKLEFEKVY PYLL++KKRYAGL +TNP K DKMD KGIETVRRD C+L++
Sbjct: 779 RISKEFLSPIKLEFEKVYCPYLLLNKKRYAGLLYTNPNKHDKMDCKGIETVRRDFCILIQ 838
Query: 758 NLVTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHV 817
++ L+K+L+++++ A++Y KS I +LL N +D+SLLV+TK L KT DYE + HV
Sbjct: 839 QMMETVLNKLLIEKNLNSAIEYTKSKIKELLTNNIDMSLLVVTKSLGKT--DYETRLPHV 896
Query: 818 ELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQ 877
ELA+++++RD+ATAPNVGDRV Y+I+K KG YER+EDP+YVL+NN+ ID ++YL+
Sbjct: 897 ELAKKLKQRDSATAPNVGDRVSYIIVKGVKGQAQYERAEDPLYVLDNNLAIDYNHYLD-A 955
Query: 878 ISKPLLRIFEPILKNASKELLSGDHTRSISISTPSNSGIMKFAKRQLSCIGCKALISNGT 937
I PL RIFE I++N S L SGDHTR +I T S + + KF K+ + CIGC + I
Sbjct: 956 IKSPLSRIFEVIMQN-SDSLFSGDHTRHKTILTSSQTALSKFLKKSVRCIGCNSSIKKPP 1014
Query: 938 LCSHCK-GREAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRK 996
LC+HCK +E +Y + + + + F +LWT+CQ CQG+LH DV+C +RDCPIFYRR
Sbjct: 1015 LCNHCKENKEFSIYMQKIKDFKNKQNEFFQLWTECQRCQGNLHVDVICMNRDCPIFYRRA 1074
Query: 997 KAQKDMAEAKLQL 1009
K +KD+A + Q+
Sbjct: 1075 KIKKDIANLQEQV 1087
Score = 482 (174.7 bits), Expect = 7.9e-223, Sum P(3) = 7.9e-223
Identities = 104/291 (35%), Positives = 160/291 (54%)
Query: 116 SAAIIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANRNSK 175
S IIRI+ + ++G SV VH F PYFY+ P +D+ ++ + N K
Sbjct: 115 SVPIIRIYSLRKDGCSVLINVHNFFPYFYVEKPDDFDNEDLIKLEMLMNENLN-LNSQYK 173
Query: 176 V-PQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSF 234
+ + + IE+V+ S+MY+++ + FLKI V LP MV S + + + ++ +
Sbjct: 174 IYEKKILKIEIVKTESLMYFKKNGKKDFLKITVLLPKMVPSLKKYFEGIVHVNNKSIGGI 233
Query: 235 MTYESNVLFALRFMIDCNIVGGNWIEVPVGKY--RKTAKTLSYCQLEFDCLYSDIISRHP 292
+ YE+N+ F LR++ID I G +WI G Y R K +S C E D Y +
Sbjct: 234 V-YEANLPFILRYIIDHKITGSSWINCKKGHYYIRNKNKKISNCTFEIDISYEHVEPITL 292
Query: 293 EGEFSKMAPFRILSFDIECAGRKGH-FPEPTHDPVIQVANLVTLQGEK-QPFIRNVMTLK 350
E E+ ++ RILSFDIEC G FPE +DP+IQ+++++ QGE + + TL
Sbjct: 293 ENEYQQIPKLRILSFDIECIKLDGKGFPEAKNDPIIQISSILYFQGEPIDNCTKFIFTLL 352
Query: 351 SCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
CA I G +V+ F E+ +L AW +FI +DPD + GYNI FDLPY++ +
Sbjct: 353 ECASIPGSNVIWFNDEKTLLEAWNEFIIRIDPDFLTGYNIINFDLPYILNR 403
Score = 48 (22.0 bits), Expect = 1.0e-41, Sum P(3) = 1.0e-41
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 382 PDVMIGYNICKFDLPYLIEKEDVHHSIISDLQNGNAET 419
P +MI +N+C LI+ +H + SDLQN + T
Sbjct: 604 PSIMIAHNLC---YSTLIKS---NHEV-SDLQNDDITT 634
Score = 42 (19.8 bits), Expect = 7.9e-223, Sum P(3) = 7.9e-223
Identities = 11/55 (20%), Positives = 26/55 (47%)
Query: 66 QDFASRLAKWARP----PLSSGYVSQCQSIMFQQLDIDYVIGDSNRELLPLSSGS 116
++F L + RP + + + ++ Q+D+DY + + + ++ SGS
Sbjct: 37 EEFDKLLKNYERPNVYDEIGNATFKNDEDLITFQIDLDYTVENIFKNMIYNESGS 91
>UNIPROTKB|F1P7D5 [details] [associations]
symbol:REV3L "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0016035 "zeta DNA polymerase complex" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 SUPFAM:SSF53098 GO:GO:0003887
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 CTD:5980 KO:K02350 OMA:DGTADEN GO:GO:0016035
GeneTree:ENSGT00550000074640 EMBL:AAEX03008609 EMBL:AAEX03008610
RefSeq:XP_539084.3 Ensembl:ENSCAFT00000006350 GeneID:481963
KEGG:cfa:481963 Uniprot:F1P7D5
Length = 3136
Score = 704 (252.9 bits), Expect = 1.4e-82, Sum P(5) = 1.4e-82
Identities = 194/600 (32%), Positives = 294/600 (49%)
Query: 436 RLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNL--VIPNVKQAGS 493
++L++L I EMAR+ G+ +L+RG +V S +LR AK N V P+V+Q
Sbjct: 2535 QMLEQLDLIGKTSEMARLFGIQFLHVLTRGSQYRVESMMLRIAKPMNYIPVTPSVQQRSQ 2594
Query: 494 EQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYST-LVTPEDARK------ 546
+ ++E + FY + LDF SLYPSI++AYN C+ST L E+ K
Sbjct: 2595 MRAPQCVPLIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFSTCLGHVENLGKYDEFKF 2654
Query: 547 ----LNLPPEC-------VNKTPSGETFVKSNLQKGXXXXXXXXXXXXXXXXXXXXXXXX 595
L +PP+ + +P+G FVK +++KG
Sbjct: 2655 GCTSLRVPPDLLYQIRHDITVSPNGIAFVKPSVRKGVLPRMLEEILKTRLMVKQSMKAYK 2714
Query: 596 XPLEKA-VLDGRQLALKISANSVYGFTGATV-GQLPCIEISSSVTSYGRQMIEHTKKLVE 653
+ +LD RQL LK+ AN +G+T A G++PCIE+ S+ R+ +E KLV
Sbjct: 2715 QDRALSRMLDARQLGLKLIANVTFGYTAANFSGRMPCIEVGDSIVHKARETLERAIKLVN 2774
Query: 654 DKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEK 713
D T G A V+YGDTDS+ V T E + K+G+E A+ ++ T KP+KL+FEK
Sbjct: 2775 D--TKKWG----ARVVYGDTDSMFVLLKGATKEQSFKIGQEIAEAVTATNPKPVKLKFEK 2828
Query: 714 VYYPYLLISKKRYAG-LYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRD 772
VY P +L +KKRY G +Y T +K D KGIETVRRD+C V ++ L + RD
Sbjct: 2829 VYLPCVLQTKKRYVGYMYETLDQKDPVFDAKGIETVRRDSCPAVSKILERSLKLLFETRD 2888
Query: 773 IPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAA--HVELAERMRKRDAAT 830
I QYV+ LL + + + K + Y+ A +EL +M D +
Sbjct: 2889 ISLIKQYVQRQCMKLLEGKASIQDFIFAKEY-RGSSSYKPGACVPALELTRKMLTYDRRS 2947
Query: 831 APNVGDRVPYVIIKAAKGAKAYERSEDPIYVLEN-NIPIDTHYYLENQISKPLLRIFEPI 889
P VG+RVPYVII G + P+ VL++ + ++ YY+ QI PL RIF I
Sbjct: 2948 EPRVGERVPYVIIYGTPGVPLIQLVRRPVEVLQDPTLRLNATYYITKQILPPLARIFSLI 3007
Query: 890 ---LKNASKELLSGDHTRSISISTPSN-SGIMKFAKRQLSCIGCKALISNGTLCSHCKGR 945
+ N EL S S S P G + L C C L +G +CS C+ +
Sbjct: 3008 GIDVFNWYHELPRIQKATSSSRSEPEGRKGTISQYFTTLHCPVCDDLTQHG-ICSKCRSQ 3066
Query: 946 EAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEA 1005
+ +++ELE +L C+ C G + + C S +CP+ ++ + +++++A
Sbjct: 3067 PQHVAVILNQEIRELERKQEQLVKICKNCTGCFDRHIPCVSLNCPVLFKLSRVNRELSKA 3126
Score = 157 (60.3 bits), Expect = 1.4e-82, Sum P(5) = 1.4e-82
Identities = 46/170 (27%), Positives = 77/170 (45%)
Query: 109 LLPLSSG---SAAIIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQI--- 162
L PL+ ++R+FG T G C +HG PY Y+ G G S+ Q+
Sbjct: 24 LCPLTQAPVKKVPVVRVFGATPAGQKTCLHLHGIFPYLYVPY-DGYGQQPESYLSQMAFS 82
Query: 163 LEGRMREANRN-SKVPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILD 221
++ + A N S Q V + +V Y + K + F+KI + P MV +L
Sbjct: 83 IDRALNVALGNPSSTAQHVFKVSLVSGMPFYGYHE-KEKHFMKIYLYNPAMVKRICELLQ 141
Query: 222 RGIQLDGLGMKSFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAK 271
G ++ K + +E+++ + L+ ID N+ G N I + K+RK +
Sbjct: 142 SGAIMN----KFYQPHEAHIPYLLQLFIDYNLYGMNLINLAAVKFRKARR 187
Score = 71 (30.1 bits), Expect = 1.4e-82, Sum P(5) = 1.4e-82
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 355 IVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
I G++V E+ + D I+ DPD+++GY I YL+++
Sbjct: 2377 ITGLEVTYAPDEKALFQEIADIIKRYDPDILLGYEIQMHSWGYLLQR 2423
Score = 50 (22.7 bits), Expect = 1.4e-82, Sum P(5) = 1.4e-82
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 260 EVPVGKYRKTAKTLSYCQLEFDCLYSDIISR 290
E+P + + S C+LE D + +DI++R
Sbjct: 218 EIPSSLILEGVEPQSTCELEVDAVAADILNR 248
Score = 49 (22.3 bits), Expect = 6.7e-05, Sum P(4) = 6.7e-05
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 344 RNVMTLKSCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNIC 391
R+ M C P++ F + ++L DF + + P ++I YN C
Sbjct: 2592 RSQMRAPQCVPLIMEPESRFYSNSVLVL---DF-QSLYPSIVIAYNYC 2635
Score = 45 (20.9 bits), Expect = 1.5e-79, Sum P(4) = 1.5e-79
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 451 ARVTGVPISFLLSRGQS-IKVLSQLLRKAKQK 481
+R P +F GQS + VL +LL+K +QK
Sbjct: 1513 SRNVSTPSAF--GEGQSGLAVLKELLQKRQQK 1542
Score = 38 (18.4 bits), Expect = 1.4e-82, Sum P(5) = 1.4e-82
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 304 ILSFDIECAGRKGHFPEPTHDPV 326
++S ++ R+ P+P DP+
Sbjct: 2305 LISVELHARTRRDLEPDPEFDPI 2327
>ZFIN|ZDB-GENE-050302-55 [details] [associations]
symbol:rev3l "REV3-like, catalytic subunit of DNA
polymerase zeta (yeast)" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 ZFIN:ZDB-GENE-050302-55 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260
GeneTree:ENSGT00550000074640 EMBL:CABZ01061477 EMBL:CABZ01061476
EMBL:CU570797 IPI:IPI00996886 Ensembl:ENSDART00000092264
ArrayExpress:E7FDC5 Bgee:E7FDC5 Uniprot:E7FDC5
Length = 2953
Score = 690 (248.0 bits), Expect = 6.0e-82, Sum P(5) = 6.0e-82
Identities = 200/606 (33%), Positives = 292/606 (48%)
Query: 436 RLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNL--VIPNVKQAGS 493
+LL + I E+ARV G+ +L+RG +V S +LR AK N V P+ +Q
Sbjct: 2348 QLLQQQDIIGRTSELARVFGIQFYHVLTRGSQYRVESMMLRVAKPMNYIPVTPSTQQRAQ 2407
Query: 494 EQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYST-------LVTPEDAR- 545
++ V+E + FY + LDF SLYPSI++AYN CYST L T ++ +
Sbjct: 2408 QRAAQCIPLVMEPESRFYSNSVIVLDFQSLYPSIVIAYNYCYSTCLGHIENLGTYDEFKF 2467
Query: 546 ---KLNLPPEC-------VNKTPSGETFVKSNLQKGXXXXXXXXXXXXXXXXXXXXXXXX 595
L +PP+ + +P+G FVKS++++G
Sbjct: 2468 GCASLRVPPDLLYQLRNDITVSPNGVAFVKSSVRRGVLPRMLEEILKTRIMVKQSMKAYR 2527
Query: 596 XPLEKAV---LDGRQLALKISANSVYGFTGATV-GQLPCIEISSSVTSYGRQMIEHTKKL 651
+KA+ LD RQL LK+ AN +G+T A G++PC+E+ S+ R+ +E K+
Sbjct: 2528 N--DKALSRLLDARQLGLKLIANVTFGYTSANFSGRMPCVEVGDSIVHKARETLERAIKM 2585
Query: 652 VEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEF 711
V D T G A V+YGDTDS+ V T E A K+G E A+ ++ T KPIKL+F
Sbjct: 2586 VND--TKKWG----ARVVYGDTDSMFVLLKGATKEQAFKIGNEIAEAVTATNPKPIKLKF 2639
Query: 712 EKVYYPYLLISKKRYAG-LYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVD 770
EKVY P +L +KKRY G +Y + ++ D KGIETVRRD C V ++ L +
Sbjct: 2640 EKVYLPCILQTKKRYVGYMYESVDQENPVFDAKGIETVRRDGCPGVSKILERSLKLLFES 2699
Query: 771 RDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAA--HVELAERMRKRDA 828
RDI QYV+ ++ + + L K +G Y A +EL RM D
Sbjct: 2700 RDISQVKQYVQRQCVKVVEGKASMQDLTFAKEYRGSGS-YRPGACVPALELTRRMMAFDR 2758
Query: 829 ATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLEN-NIPIDTHYYLENQISKPLLRIFE 887
P VG+RVPYVI+ + G + P+ VL++ ++ ++ YY+ QI PL RIF
Sbjct: 2759 RLEPRVGERVPYVIVYGSPGVPLIQLVRRPLEVLQDPSLRLNATYYITKQILPPLARIFN 2818
Query: 888 PILKNASK---ELLSGDHTRSISISTPSNSGIMKFAKRQ----LSCIGCKALISNGTLCS 940
I + EL S + S G K Q L C C L G +C+
Sbjct: 2819 LIGVDVFSWYHELPRVQRAWSFTSSGRGEEGTKKGTISQYFTTLHCPVCDELTQLG-VCA 2877
Query: 941 HCKGREAELYCKTVSQVQEL---EVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKK 997
C+ AE C V Q+L E +L C+ C GS + V C S DCPI Y+ +
Sbjct: 2878 RCR---AEPQCVAVHLHQDLRLWESQQDQLLKICRSCSGSAERQVPCVSLDCPILYKLSR 2934
Query: 998 AQKDMA 1003
++++
Sbjct: 2935 VNRNLS 2940
Score = 180 (68.4 bits), Expect = 6.0e-82, Sum P(5) = 6.0e-82
Identities = 48/159 (30%), Positives = 77/159 (48%)
Query: 119 IIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANRNSKVPQ 178
++RIFG T G C +HG PY Y+ G G + + Q+ R N + P
Sbjct: 37 VVRIFGATPAGQKTCLHLHGIFPYIYVPY-DGFGQEADRYLRQVAYSIDRALNISMGNPS 95
Query: 179 F-VRHI-EMVQKRSIMYY-QQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFM 235
V+HI ++V + +Y + + F+KI + P MV +L G ++ KSF
Sbjct: 96 SNVQHIFKVVLVTGMPFYGYHMREKSFMKIFLYNPQMVKRVSELLQAGAVMN----KSFQ 151
Query: 236 TYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAKTLS 274
+E+++ F L+ ID N+ G N I + K+RK+ T S
Sbjct: 152 PHEAHIPFLLQLFIDYNLYGMNMISLAAVKFRKSRATAS 190
Score = 66 (28.3 bits), Expect = 6.0e-82, Sum P(5) = 6.0e-82
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 355 IVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
+ G+ V E+++ + IR+ DPD+++GY + YL+++
Sbjct: 2192 VTGLPVTYTCDEKELFEEVSNIIRKYDPDILVGYEVQMHSWGYLLQR 2238
Score = 51 (23.0 bits), Expect = 6.0e-82, Sum P(5) = 6.0e-82
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 258 WIE--VPVGKYRKTAKTLSYCQLEFDCLYSDIISR 290
W E +P + + +S C+LE D + +D+++R
Sbjct: 223 WEENNIPSSLILEEVERVSVCELEVDAVAADVLNR 257
Score = 48 (22.0 bits), Expect = 2.2e-81, Sum P(4) = 2.2e-81
Identities = 21/63 (33%), Positives = 28/63 (44%)
Query: 271 KTLSYCQLEFDCLYSDIISRHPEGEFSKMAPFRILSFDIECAGRKGHFPE-PTHDPVIQV 329
KT S + E L S H + E SK IE +G KG F + PT+ +V
Sbjct: 819 KTHSPTKEEPPALLSITPGSHNQNEVSKEVDMETSGSLIESSG-KGDFADIPTNISCTKV 877
Query: 330 ANL 332
A+L
Sbjct: 878 ASL 880
Score = 45 (20.9 bits), Expect = 3.3e-07, Sum P(4) = 3.3e-07
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 352 CAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNIC 391
C P+V F + ++L DF + + P ++I YN C
Sbjct: 2413 CIPLVMEPESRFYSNSVIVL---DF-QSLYPSIVIAYNYC 2448
Score = 44 (20.5 bits), Expect = 1.2e-79, Sum P(5) = 1.2e-79
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 453 VTGVPISFLLSRGQSIKVLSQLLRK 477
VTG+P+++ + + +S ++RK
Sbjct: 2192 VTGLPVTYTCDEKELFEEVSNIIRK 2216
Score = 40 (19.1 bits), Expect = 6.0e-82, Sum P(5) = 6.0e-82
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 304 ILSFDIECAGRKGHFPEPTHDPV 326
++S ++ R+ P+P DP+
Sbjct: 2120 LMSMELHARTRRNLEPDPEFDPI 2142
Score = 37 (18.1 bits), Expect = 2.4e-79, Sum P(5) = 2.4e-79
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 401 KEDVHHSIISDLQNGNAETRRRLAVY 426
K D H + DL GN++ + + Y
Sbjct: 630 KVDSDHPDLEDLMFGNSKLAQSIKKY 655
>UNIPROTKB|E1BPY8 [details] [associations]
symbol:REV3L "DNA polymerase" species:9913 "Bos taurus"
[GO:0016035 "zeta DNA polymerase complex" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 GO:GO:0016035
GeneTree:ENSGT00550000074640 EMBL:DAAA02025892 EMBL:DAAA02025893
EMBL:DAAA02025894 EMBL:DAAA02025895 IPI:IPI00923965
Ensembl:ENSBTAT00000060948 Uniprot:E1BPY8
Length = 3133
Score = 701 (251.8 bits), Expect = 2.5e-81, Sum P(5) = 2.5e-81
Identities = 195/600 (32%), Positives = 294/600 (49%)
Query: 436 RLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNL--VIPNVKQAGS 493
++L++L I EMAR+ G+ +L+RG +V S +LR AK N V P+V+Q
Sbjct: 2532 QMLEQLDLIGKTSEMARLFGIQFLHVLTRGSQYRVESMMLRIAKPMNYIPVTPSVQQRSQ 2591
Query: 494 EQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYST-LVTPEDARK------ 546
+ ++E + FY + LDF SLYPSI++AYN C+ST L E+ K
Sbjct: 2592 MRAPQCVPLIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFSTCLGHVENLGKYDEFKF 2651
Query: 547 ----LNLPPEC-------VNKTPSGETFVKSNLQKGXXXXXXXXXXXXXXXXXXXXXXXX 595
L +PP+ + +P+G FVK +++KG
Sbjct: 2652 GCTSLRVPPDLLYQIRHDITVSPNGIAFVKPSVRKGVLPRMLEEILKTRLMVKRSMKAYK 2711
Query: 596 XP-LEKAVLDGRQLALKISANSVYGFTGATV-GQLPCIEISSSVTSYGRQMIEHTKKLVE 653
+ +LD RQL LK+ AN +G+T A G++PCIE+ S+ R+ +E KLV
Sbjct: 2712 QDRVLSRMLDARQLGLKLIANVTFGYTAANFSGRMPCIEVGDSIVHKARETLERAIKLVN 2771
Query: 654 DKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEK 713
D T G A V+YGDTDS+ V T E + K+G+E A+ ++ T KP+KL+FEK
Sbjct: 2772 D--TKKWG----ARVVYGDTDSLFVLLKGATKEQSFKIGQEIAEAVTATNPKPVKLKFEK 2825
Query: 714 VYYPYLLISKKRYAG-LYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRD 772
VY P +L +KKRY G +Y T +K D KGIETVRRD+C V ++ L + RD
Sbjct: 2826 VYLPCVLQTKKRYVGYMYETLDQKDPVFDAKGIETVRRDSCPAVSKILERSLKLLFETRD 2885
Query: 773 IPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAA--HVELAERMRKRDAAT 830
I QYV+ LL + + + K + Y+ A +EL +M D +
Sbjct: 2886 ISLIKQYVQRQCMKLLEGKASIQDFIFAKEYRGSAS-YKPGACVPALELTRKMLTYDRRS 2944
Query: 831 APNVGDRVPYVIIKAAKGAKAYERSEDPIYVLEN-NIPIDTHYYLENQISKPLLRIFEPI 889
P VG+RVPYVII A G + P+ VL++ + ++ YY+ QI PL RIF I
Sbjct: 2945 EPRVGERVPYVIIYGAPGVPLIQLVRRPVEVLQDPTLRLNATYYITKQILPPLARIFSLI 3004
Query: 890 ---LKNASKELLSGDHTRSISIST-PSNSGIMKFAKRQLSCIGCKALISNGTLCSHCKGR 945
+ + EL S S S G + L C C L +G +CS C+ +
Sbjct: 3005 GIDVFSWYHELPRIQKATSSSRSELEGRKGTIAQYFTTLHCPVCDDLTQHG-ICSKCRSQ 3063
Query: 946 EAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEA 1005
+ +++ELE RL C+ C G + + C S +CP+ Y+ + +++++A
Sbjct: 3064 PQHVAVILNQEIRELERQQERLVKICKNCTGCFDRHIPCVSLNCPVLYKLSRVNRELSKA 3123
Score = 156 (60.0 bits), Expect = 2.5e-81, Sum P(5) = 2.5e-81
Identities = 44/157 (28%), Positives = 73/157 (46%)
Query: 119 IIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQI---LEGRMREANRN-S 174
++RIFG T G C +HG PY Y+ G G S+ Q+ ++ + A N S
Sbjct: 37 VVRIFGATPAGQKTCLHLHGIFPYLYVPY-DGYGQQPESYLSQMAFSIDRALNVALGNPS 95
Query: 175 KVPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSF 234
Q V + +V Y + K + F+KI + P MV +L G ++ K +
Sbjct: 96 STAQHVFKVSVVSGMPFYGYHE-KERHFMKIYLYNPAMVKRICELLQSGAIMN----KFY 150
Query: 235 MTYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAK 271
+E+++ + L+ ID N+ G N I + K+RK +
Sbjct: 151 QPHEAHIPYLLQLFIDYNLYGMNLINLAAVKFRKARR 187
Score = 67 (28.6 bits), Expect = 2.5e-81, Sum P(5) = 2.5e-81
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 355 IVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
I G+ V E+ + + I+ DPD++IGY I YL+++
Sbjct: 2374 ITGLQVTYAADEKTLFQEIANIIKRYDPDILIGYEIQMHSWGYLLQR 2420
Score = 50 (22.7 bits), Expect = 2.5e-81, Sum P(5) = 2.5e-81
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 260 EVPVGKYRKTAKTLSYCQLEFDCLYSDIISR 290
E+P + + S C+LE D + +DI++R
Sbjct: 219 EIPSSLILEGVEPQSTCELEVDAVAADILNR 249
Score = 49 (22.3 bits), Expect = 8.3e-05, Sum P(4) = 8.3e-05
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 344 RNVMTLKSCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNIC 391
R+ M C P++ F + ++L DF + + P ++I YN C
Sbjct: 2589 RSQMRAPQCVPLIMEPESRFYSNSVLVL---DF-QSLYPSIVIAYNYC 2632
Score = 43 (20.2 bits), Expect = 1.4e-78, Sum P(4) = 1.4e-78
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 452 RVTGVPISFLLSRGQS-IKVLSQLLRKAKQK 481
R P +F GQS + VL +LL+K +QK
Sbjct: 1516 RNMSTPSAF--GEGQSGLAVLKELLQKRQQK 1544
Score = 38 (18.4 bits), Expect = 2.5e-81, Sum P(5) = 2.5e-81
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 304 ILSFDIECAGRKGHFPEPTHDPV 326
++S ++ R+ P+P DP+
Sbjct: 2302 LISVELHARTRRDLEPDPEFDPI 2324
Score = 37 (18.1 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 456 VPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGT 497
V +S LSR Q + ++ L+ +++ + N K+ Q T
Sbjct: 802 VVLSNCLSRPQKLSPVTYKLQPGNKQSRLKMNKKKLSGHQET 843
Score = 37 (18.1 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 628 LPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYEHNAEVIY 670
LP SS Y + T+++ K+T + + +A I+
Sbjct: 650 LPVSSCESSTFDYEDNIPPVTRQIPSRKYTNIRKIDKDAPFIH 692
>UNIPROTKB|O60673 [details] [associations]
symbol:REV3L "DNA polymerase zeta catalytic subunit"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0016035 "zeta DNA
polymerase complex" evidence=IDA] [GO:0006261 "DNA-dependent DNA
replication" evidence=TAS] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 GO:GO:0051539 GO:GO:0006261
SUPFAM:SSF53098 GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 EMBL:AF058701 EMBL:AF071798 EMBL:AF157476
EMBL:AF179428 EMBL:AF179429 EMBL:AF078695 EMBL:AY684169
EMBL:AL080317 EMBL:AL136310 EMBL:AL512325 EMBL:AF035537
IPI:IPI00248651 IPI:IPI00745230 RefSeq:NP_002903.3
UniGene:Hs.232021 PDB:3ABD PDB:3ABE PDB:3VU7 PDBsum:3ABD
PDBsum:3ABE PDBsum:3VU7 ProteinModelPortal:O60673 SMR:O60673
IntAct:O60673 STRING:O60673 PhosphoSite:O60673 PaxDb:O60673
PRIDE:O60673 Ensembl:ENST00000358835 Ensembl:ENST00000368802
Ensembl:ENST00000368805 Ensembl:ENST00000435970 GeneID:5980
KEGG:hsa:5980 UCSC:uc003pux.4 CTD:5980 GeneCards:GC06M111665
H-InvDB:HIX0017582 HGNC:HGNC:9968 MIM:602776 neXtProt:NX_O60673
PharmGKB:PA34337 HOGENOM:HOG000112263 HOVERGEN:HBG000426
InParanoid:O60673 KO:K02350 OMA:DGTADEN OrthoDB:EOG4NVZJD
PhylomeDB:O60673 ChiTaRS:REV3L EvolutionaryTrace:O60673
GenomeRNAi:5980 NextBio:23277 ArrayExpress:O60673 Bgee:O60673
CleanEx:HS_REV3L Genevestigator:O60673 GermOnline:ENSG00000009413
GO:GO:0016035 Uniprot:O60673
Length = 3130
Score = 696 (250.1 bits), Expect = 3.8e-81, Sum P(5) = 3.8e-81
Identities = 193/600 (32%), Positives = 294/600 (49%)
Query: 436 RLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNL--VIPNVKQAGS 493
++L++L I EMAR+ G+ +L+RG +V S +LR AK N V P+V+Q
Sbjct: 2529 QMLEQLDLIGKTSEMARLFGIQFLHVLTRGSQYRVESMMLRIAKPMNYIPVTPSVQQRSQ 2588
Query: 494 EQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYST-LVTPEDARK------ 546
+ ++E + FY + LDF SLYPSI++AYN C+ST L E+ K
Sbjct: 2589 MRAPQCVPLIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFSTCLGHVENLGKYDEFKF 2648
Query: 547 ----LNLPPEC-------VNKTPSGETFVKSNLQKGXXXXXXXXXXXXXXXXXXXXXXXX 595
L +PP+ + +P+G FVK +++KG
Sbjct: 2649 GCTSLRVPPDLLYQVRHDITVSPNGVAFVKPSVRKGVLPRMLEEILKTRFMVKQSMKAYK 2708
Query: 596 XPLEKA-VLDGRQLALKISANSVYGFTGATV-GQLPCIEISSSVTSYGRQMIEHTKKLVE 653
+ +LD RQL LK+ AN +G+T A G++PCIE+ S+ R+ +E KLV
Sbjct: 2709 QDRALSRMLDARQLGLKLIANVTFGYTSANFSGRMPCIEVGDSIVHKARETLERAIKLVN 2768
Query: 654 DKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEK 713
D T G A V+YGDTDS+ V T E + K+G+E A+ ++ T KP+KL+FEK
Sbjct: 2769 D--TKKWG----ARVVYGDTDSMFVLLKGATKEQSFKIGQEIAEAVTATNPKPVKLKFEK 2822
Query: 714 VYYPYLLISKKRYAG-LYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRD 772
VY P +L +KKRY G +Y T +K D KGIETVRRD+C V ++ L + RD
Sbjct: 2823 VYLPCVLQTKKRYVGYMYETLDQKDPVFDAKGIETVRRDSCPAVSKILERSLKLLFETRD 2882
Query: 773 IPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAA--HVELAERMRKRDAAT 830
I QYV+ LL + + + K + Y+ A +EL +M D +
Sbjct: 2883 ISLIKQYVQRQCMKLLEGKASIQDFIFAKEY-RGSFSYKPGACVPALELTRKMLTYDRRS 2941
Query: 831 APNVGDRVPYVIIKAAKGAKAYERSEDPIYVLEN-NIPIDTHYYLENQISKPLLRIFEPI 889
P VG+RVPYVII G + P+ VL++ + ++ YY+ QI PL RIF I
Sbjct: 2942 EPQVGERVPYVIIYGTPGVPLIQLVRRPVEVLQDPTLRLNATYYITKQILPPLARIFSLI 3001
Query: 890 ---LKNASKELLSGDHTRSISISTPSN-SGIMKFAKRQLSCIGCKALISNGTLCSHCKGR 945
+ + EL S S S P G + L C C L +G +CS C+ +
Sbjct: 3002 GIDVFSWYHELPRIHKATSSSRSEPEGRKGTISQYFTTLHCPVCDDLTQHG-ICSKCRSQ 3060
Query: 946 EAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEA 1005
+ +++ELE +L C+ C G + + C S +CP+ ++ + +++++A
Sbjct: 3061 PQHVAVILNQEIRELERQQEQLVKICKNCTGCFDRHIPCVSLNCPVLFKLSRVNRELSKA 3120
Score = 161 (61.7 bits), Expect = 3.8e-81, Sum P(5) = 3.8e-81
Identities = 44/157 (28%), Positives = 74/157 (47%)
Query: 119 IIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQI---LEGRMREANRN-S 174
++R+FG T G C +HG PY Y+ G G S+ Q+ ++ + A N S
Sbjct: 37 VVRVFGATPAGQKTCLHLHGIFPYLYVPY-DGYGQQPESYLSQMAFSIDRALNVALGNPS 95
Query: 175 KVPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSF 234
Q V + +V Y + K + F+KI + PTMV +L G ++ K +
Sbjct: 96 STAQHVFKVSLVSGMPFYGYHE-KERHFMKIYLYNPTMVKRICELLQSGAIMN----KFY 150
Query: 235 MTYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAK 271
+E+++ + L+ ID N+ G N I + K+RK +
Sbjct: 151 QPHEAHIPYLLQLFIDYNLYGMNLINLAAVKFRKARR 187
Score = 71 (30.1 bits), Expect = 3.8e-81, Sum P(5) = 3.8e-81
Identities = 33/146 (22%), Positives = 62/146 (42%)
Query: 328 QVANLVTLQGEKQPF---IRNVMTLKSCAPIVGVDVMSFETERDVLLAWRDFIREVDPDV 384
++ ++ + +K F IR L + I G++V E+ + + I+ DPD+
Sbjct: 2341 ELTGVIVIDKDKTVFSQDIRYQTPLLIRSGITGLEVTYAADEKALFHEIANIIKRYDPDI 2400
Query: 385 MIGYNICKFDLPYLIEKE-----DVHHSI--ISD--LQNGNAETRRRLAVYCLKDAYLPQ 435
++GY I YL+++ D+ I + D ++N A R Y + + +
Sbjct: 2401 LLGYEIQMHSWGYLLQRAAALSIDLCRMISRVPDDKIENRFAAERDEYGSYTMSEINIVG 2460
Query: 436 RLLDKLMFIF-NYVEMARVTGVPISF 460
R+ L I N V + T +SF
Sbjct: 2461 RITLNLWRIMRNEVALTNYTFENVSF 2486
Score = 50 (22.7 bits), Expect = 3.8e-81, Sum P(5) = 3.8e-81
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 260 EVPVGKYRKTAKTLSYCQLEFDCLYSDIISR 290
E+P + + S C+LE D + +DI++R
Sbjct: 218 EIPSSLILEGVEPQSTCELEVDAVAADILNR 248
Score = 49 (22.3 bits), Expect = 2.7e-05, Sum P(4) = 2.7e-05
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 344 RNVMTLKSCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNIC 391
R+ M C P++ F + ++L DF + + P ++I YN C
Sbjct: 2586 RSQMRAPQCVPLIMEPESRFYSNSVLVL---DF-QSLYPSIVIAYNYC 2629
Score = 44 (20.5 bits), Expect = 3.2e-78, Sum P(4) = 3.2e-78
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 452 RVTGVPISFLLSRGQS-IKVLSQLLRKAKQK 481
R P +F GQS + VL +LL+K +QK
Sbjct: 1512 RNVSTPSAF--GEGQSGLAVLKELLQKRQQK 1540
Score = 42 (19.8 bits), Expect = 1.7e-05, Sum P(3) = 1.7e-05
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 628 LPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYEHNAEVIY 670
LP SS+ Y + T+++ K+T + E ++ I+
Sbjct: 650 LPVSSCESSIFDYEEDIPSVTRQVPSRKYTNIRKIEKDSPFIH 692
Score = 41 (19.5 bits), Expect = 2.9e-67, Sum P(4) = 2.9e-67
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 252 NIVGGNWIEVPVGKYRKTAKTL---SYCQLEFDCLYSDIISRH 291
+++ + + V + K A TL S ++ F C ++ +S H
Sbjct: 546 SVIATSKLSVKPSIFHKDAATLEPSSSAKITFQCKHTSALSSH 588
Score = 38 (18.4 bits), Expect = 3.8e-81, Sum P(5) = 3.8e-81
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 304 ILSFDIECAGRKGHFPEPTHDPV 326
++S ++ R+ P+P DP+
Sbjct: 2299 LISVELHARTRRDLEPDPEFDPI 2321
Score = 37 (18.1 bits), Expect = 7.6e-67, Sum P(4) = 7.6e-67
Identities = 7/16 (43%), Positives = 13/16 (81%)
Query: 104 DSNRELLPLSSGSAAI 119
+S +E+LP+SS ++I
Sbjct: 644 NSKKEILPVSSCESSI 659
>UNIPROTKB|F1NQT0 [details] [associations]
symbol:REV3L "DNA polymerase" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0016035 "zeta DNA
polymerase complex" evidence=IEA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 OMA:DGTADEN
GeneTree:ENSGT00550000074640 EMBL:AADN02002055 EMBL:AADN02002056
IPI:IPI00582758 Ensembl:ENSGALT00000024245 Uniprot:F1NQT0
Length = 3100
Score = 704 (252.9 bits), Expect = 8.1e-80, Sum P(5) = 8.1e-80
Identities = 196/603 (32%), Positives = 298/603 (49%)
Query: 436 RLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNL--VIPNVKQAGS 493
+LL KL I EMAR+ G+ +L+RG +V S +LR AK N V P+++Q
Sbjct: 2499 QLLQKLDLIDRTSEMARLFGIQFLHVLTRGSQYRVESMMLRVAKPMNYIPVTPSIQQRAQ 2558
Query: 494 EQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLVTPE------DARK- 546
+ ++E + FY + LDF SLYPSI++AYN C+ST + P DA K
Sbjct: 2559 MKAPQCVPLIMEPESRFYSNAVLVLDFQSLYPSIVIAYNYCFSTCLGPVENLGKYDAFKF 2618
Query: 547 ----LNLPPEC-------VNKTPSGETFVKSNLQKGXXXXXXXXXXXXXXXXXXXXXXXX 595
L +PP+ + +PSG FVK +++KG
Sbjct: 2619 GCTSLRVPPDLLYQIRHDITVSPSGVAFVKPSVRKGVLPRMLEEILKTRIMVKQSMKAYK 2678
Query: 596 XPLEKAV---LDGRQLALKISANSVYGFTGATV-GQLPCIEISSSVTSYGRQMIEHTKKL 651
+KA+ L+ RQL LK AN YG+T A G++PCIE+ S+ R+ +E KL
Sbjct: 2679 H--DKAITRMLEARQLGLKYIANFTYGYTAANFSGRMPCIELGDSIVHKARETLERAIKL 2736
Query: 652 VEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEF 711
V D T G A V+YGDTDS+ V T E + K+G+E A+ ++ T KP+KL+F
Sbjct: 2737 VND--TKKWG----AHVVYGDTDSMFVLLKGATKEQSFKIGQEIAEAVTATNPKPVKLKF 2790
Query: 712 EKVYYPYLLISKKRYAG-LYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVD 770
EKVY P +L +KKRY G +Y T +K D KGIETVRRD+C V ++ EC K+L +
Sbjct: 2791 EKVYLPCVLQTKKRYVGYMYETLDQKDPVFDAKGIETVRRDSCPAVSKIL-ECSIKLLFE 2849
Query: 771 -RDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAA--HVELAERMRKRD 827
RDI QYV++ LL + + + K + Y+ + +E+ RM D
Sbjct: 2850 TRDISQIKQYVQNQCMKLLEGKASIQDFIFAKEY-RGSSAYKPGSCVPALEITRRMLAYD 2908
Query: 828 AATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLEN-NIPIDTHYYLENQISKPLLRIF 886
+ P VG+RVPYVI+ G + P VL++ ++ ++ YY+ QI PL R+F
Sbjct: 2909 RRSEPRVGERVPYVIVYGMPGLPLIQLVRRPTEVLQDPSLRLNATYYITKQILPPLARVF 2968
Query: 887 EPI---LKNASKELLSGDHTRSISIST-PSNSGIMKFAKRQLSCIGCKALISNGTLCSHC 942
I + + EL T S + S G + L C C L G +C+ C
Sbjct: 2969 SLIGIDVFSWYHELPRIQKTASTARSELEGRKGTISQYFTTLHCPVCDELTQYG-ICTKC 3027
Query: 943 KGREAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDM 1002
+ + + +++ELE +L C+ C G + + C S +CP+ ++ + +++
Sbjct: 3028 RSQPQHVAVILNQEIRELERKQDQLVKICKNCTGCFDRQIPCVSLNCPVLFKLSRVSREL 3087
Query: 1003 AEA 1005
+A
Sbjct: 3088 LKA 3090
Score = 131 (51.2 bits), Expect = 8.1e-80, Sum P(5) = 8.1e-80
Identities = 40/146 (27%), Positives = 65/146 (44%)
Query: 129 GHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANRNSKVPQF-VRHIEMVQ 187
G C +HG PY Y+ G G + Q+ R N P ++H+ V
Sbjct: 1 GQKTCLHLHGVFPYLYVPY-DGFGQHPEHYLRQVAFSIDRALNVALGNPSSTIQHVFKVS 59
Query: 188 KRSIM--YYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFMTYESNVLFAL 245
S M Y +K + F+KI + P MV +L G ++ KS+ +E+++ + L
Sbjct: 60 LVSGMPFYGYHEKERQFMKIYLYNPAMVKRVCELLQGGAIMN----KSYQPHEAHIPYLL 115
Query: 246 RFMIDCNIVGGNWIEVPVGKYRKTAK 271
+ ID N+ G N I + K+RK +
Sbjct: 116 QLFIDYNLYGMNLINLAAVKFRKARR 141
Score = 69 (29.3 bits), Expect = 8.1e-80, Sum P(5) = 8.1e-80
Identities = 19/81 (23%), Positives = 39/81 (48%)
Query: 344 RNVMTLKSCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEKED 403
R+ L + + I G++V ER + + ++ DPD+++GY + YL+++
Sbjct: 2330 RDQAPLLTRSGITGLEVSYATDERTLFQEVVNIVKRYDPDILLGYEVQMHSWGYLLQRAA 2389
Query: 404 VHH----SIISDLQNGNAETR 420
+ +IS + + N E R
Sbjct: 2390 ALNVDLCQMISRVPDDNKENR 2410
Score = 50 (22.7 bits), Expect = 8.1e-80, Sum P(5) = 8.1e-80
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 260 EVPVGKYRKTAKTLSYCQLEFDCLYSDIISR 290
E+P K + S C+LE D + +DI+++
Sbjct: 172 EIPSSLMLKGVEPQSTCELEVDAVAADILNQ 202
Score = 47 (21.6 bits), Expect = 2.3e-78, Sum P(5) = 2.3e-78
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 405 HHSIISDLQNGNAETRRRLAVYCL 428
+ ++ DL N ETR L+V+ L
Sbjct: 545 NEDLVEDLSQPNTETRPELSVHSL 568
Score = 47 (21.6 bits), Expect = 2.3e-78, Sum P(5) = 2.3e-78
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 452 RVTGVPISFLLSRGQS-IKVLSQLLRKAKQK 481
R P +F S GQS + VL +LL+K +QK
Sbjct: 1476 RTIVAPSAF--SEGQSGLAVLKELLQKRQQK 1504
Score = 43 (20.2 bits), Expect = 4.7e-69, Sum P(4) = 4.7e-69
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 252 NIVGGNWIEVPVGKYRKTAKTL---SYCQLEFDCLYSDIISRH 291
+++ + + V + K A TL S ++ F C ++ +S H
Sbjct: 499 SVIATSKMSVKTSIFHKDAATLEPPSSAKITFQCKHTSALSNH 541
Score = 39 (18.8 bits), Expect = 8.1e-80, Sum P(5) = 8.1e-80
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 304 ILSFDIECAGRKGHFPEPTHDPV 326
++S ++ R+ P+P DP+
Sbjct: 2269 LISMELHARTRRDLEPDPEFDPI 2291
>MGI|MGI:1337131 [details] [associations]
symbol:Rev3l "REV3-like, catalytic subunit of DNA polymerase
zeta RAD54 like (S. cerevisiae)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016035 "zeta DNA polymerase
complex" evidence=ISO;IBA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051536
"iron-sulfur cluster binding" evidence=IEA] [GO:0051539 "4 iron, 4
sulfur cluster binding" evidence=IEA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 EMBL:AF083464 MGI:MGI:1337131
GO:GO:0005634 GO:GO:0005694 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 GO:GO:0051539 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 CTD:5980
HOGENOM:HOG000112263 HOVERGEN:HBG000426 KO:K02350 OMA:DGTADEN
ChiTaRS:REV3L GO:GO:0016035 EMBL:AB031049 EMBL:AC118733
EMBL:AC119943 EMBL:D78644 IPI:IPI00378205 PIR:T17202
RefSeq:NP_035394.2 UniGene:Mm.439723 PDB:4FJO PDBsum:4FJO
ProteinModelPortal:Q61493 SMR:Q61493 STRING:Q61493
PhosphoSite:Q61493 PaxDb:Q61493 PRIDE:Q61493
Ensembl:ENSMUST00000019986 Ensembl:ENSMUST00000164763 GeneID:19714
KEGG:mmu:19714 UCSC:uc007ewc.1 GeneTree:ENSGT00550000074640
InParanoid:Q61493 NextBio:297104 Bgee:Q61493 Genevestigator:Q61493
GermOnline:ENSMUSG00000019841 Uniprot:Q61493
Length = 3122
Score = 679 (244.1 bits), Expect = 5.0e-78, Sum P(5) = 5.0e-78
Identities = 190/600 (31%), Positives = 293/600 (48%)
Query: 436 RLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNL--VIPNVKQAGS 493
++L++L I EMAR+ G+ +L+RG +V S +LR AK N V P+++Q
Sbjct: 2521 QMLEQLDLIGKTSEMARLFGIQFLHVLTRGSQYRVESMMLRIAKPMNYIPVTPSIQQRSQ 2580
Query: 494 EQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYST-LVTPEDARK------ 546
+ ++E + FY + LDF SLYPSI++AYN C+ST L E+ K
Sbjct: 2581 MRAPQCVPLIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFSTCLGHVENLGKYDEFKF 2640
Query: 547 ----LNLPPEC-------VNKTPSGETFVKSNLQKGXXXXXXXXXXXXXXXXXXXXXXXX 595
L +PP+ V +P+G FVK +++KG
Sbjct: 2641 GCTSLRVPPDLLYQIRHDVTVSPNGVAFVKPSVRKGVLPRMLEEILKTRLMVKQSMKSYK 2700
Query: 596 XPLEKA-VLDGRQLALKISANSVYGFTGATV-GQLPCIEISSSVTSYGRQMIEHTKKLVE 653
+ +L+ RQL LK+ AN +G+T A G++PCIE+ S+ R+ +E KLV
Sbjct: 2701 QDRALSRMLNARQLGLKLIANVTFGYTAANFSGRMPCIEVGDSIVHKARETLERAIKLVN 2760
Query: 654 DKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEK 713
D T G A V+YGDTDS+ V T E + K+G+E A+ ++ T +P+KL+FEK
Sbjct: 2761 D--TKKWG----ARVVYGDTDSMFVLLKGATKEQSFKIGQEIAEAVTATNPRPVKLKFEK 2814
Query: 714 VYYPYLLISKKRYAG-LYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRD 772
VY P +L +KKRY G +Y T +K D KGIETVRRD+C V ++ L + RD
Sbjct: 2815 VYLPCVLQTKKRYVGYMYETLDQKEPVFDAKGIETVRRDSCPAVSKILERSLKLLFETRD 2874
Query: 773 IPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAA--HVELAERMRKRDAAT 830
I QYV+ L+ + + + K + Y A +EL +M D +
Sbjct: 2875 ISLIKQYVQRQCMKLVEGKASIQDFIFAKEY-RGSFSYRPGACVPALELTRKMLAYDRRS 2933
Query: 831 APNVGDRVPYVIIKAAKGAKAYERSEDPIYVLEN-NIPIDTHYYLENQISKPLLRIFEPI 889
P VG+RVPYVII G + P VL++ + ++ YY+ QI PL RIF I
Sbjct: 2934 EPRVGERVPYVIIYGTPGLPLIQLIRRPAEVLQDPTLRLNATYYITKQILPPLARIFSLI 2993
Query: 890 ---LKNASKELLSGDHTRSISIST-PSNSGIMKFAKRQLSCIGCKALISNGTLCSHCKGR 945
+ + +EL S S S G + L C C L +G +CS C+ +
Sbjct: 2994 GIDVFSWYQELPRIQKATSSSRSELEGRKGTISQYFTTLHCPVCDDLTQHG-ICSKCRSQ 3052
Query: 946 EAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEA 1005
+ +++ELE +L C+ C GS + + C S +CP+ ++ + +++++A
Sbjct: 3053 PQHVAIILNQEIRELERKQEQLIKICRNCTGSFDRHIPCVSLNCPVLFKLSRVNRELSKA 3112
Score = 157 (60.3 bits), Expect = 5.0e-78, Sum P(5) = 5.0e-78
Identities = 43/157 (27%), Positives = 73/157 (46%)
Query: 119 IIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQI---LEGRMREANRN-S 174
++R+FG T G C +HG PY Y+ G G S+ Q+ ++ + A N S
Sbjct: 37 VVRVFGATPAGQKTCLHLHGIFPYLYVPY-DGYGQQPESYLSQMAFSIDRALNVALGNPS 95
Query: 175 KVPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSF 234
Q V + +V Y + K + F+KI + P MV +L G ++ K +
Sbjct: 96 STAQHVFKVSLVSGMPFYGYHE-KERHFMKIYLYNPAMVKRICELLQSGAIMN----KCY 150
Query: 235 MTYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAK 271
+E+++ + L+ ID N+ G N I + K+RK +
Sbjct: 151 QPHEAHIPYLLQLFIDYNLYGMNLINLAAVKFRKARR 187
Score = 68 (29.0 bits), Expect = 5.0e-78, Sum P(5) = 5.0e-78
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 343 IRNVMTLKSCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
IR+ L + I G++V E+ + + I+ DPD+++GY I YL+++
Sbjct: 2351 IRSQTPLLIRSGITGLEVTYAADEKALFQEITNIIKRYDPDILLGYEIQMHSWGYLLQR 2409
Score = 56 (24.8 bits), Expect = 5.0e-78, Sum P(5) = 5.0e-78
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 260 EVPVGKYRKTAKTLSYCQLEFDCLYSDIISR 290
E+P + + LS C+LE D + +DI++R
Sbjct: 218 EIPSSLLLEGVEPLSTCELEVDAVAADILNR 248
Score = 49 (22.3 bits), Expect = 1.7e-05, Sum P(4) = 1.7e-05
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 344 RNVMTLKSCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNIC 391
R+ M C P++ F + ++L DF + + P ++I YN C
Sbjct: 2578 RSQMRAPQCVPLIMEPESRFYSNSVLVL---DF-QSLYPSIVIAYNYC 2621
Score = 45 (20.9 bits), Expect = 9.6e-76, Sum P(4) = 9.6e-76
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 429 KDAYLPQRLLDKLMFIFNYVEMARVTGVPISFLLSRGQS-IKVLSQLLRKAKQK 481
K + QR L + + + + V + GQS + VL +LL+K +QK
Sbjct: 1485 KPEKVKQRSLSEAISQTKALSQCKNQNVSTPSVFGEGQSGLAVLKELLQKRQQK 1538
Score = 41 (19.5 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 628 LPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYEHNAEVIY 670
LP SSV Y + T+++ K++ + E +A I+
Sbjct: 649 LPVSSCESSVFDYEEDIPSVTRQVPSRKYSNMRKIEKDASCIH 691
Score = 38 (18.4 bits), Expect = 5.0e-78, Sum P(5) = 5.0e-78
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 304 ILSFDIECAGRKGHFPEPTHDPV 326
++S ++ R+ P+P DP+
Sbjct: 2291 LISVELHARTRRDLQPDPEFDPI 2313
>UNIPROTKB|F1LMP6 [details] [associations]
symbol:Rev3l "DNA polymerase" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0016035 "zeta DNA polymerase complex" evidence=IEA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 RGD:1307087
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0003887 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 IPI:IPI00361212
Ensembl:ENSRNOT00000000725 ArrayExpress:F1LMP6 Uniprot:F1LMP6
Length = 3118
Score = 683 (245.5 bits), Expect = 2.0e-77, Sum P(5) = 2.0e-77
Identities = 189/600 (31%), Positives = 293/600 (48%)
Query: 436 RLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNL--VIPNVKQAGS 493
++L++L I EMAR+ G+ +L+RG +V S +LR AK N V P+V+Q
Sbjct: 2517 QMLEQLDLIGKTSEMARLFGIQFLHVLTRGSQYRVESMMLRIAKPMNYIPVTPSVQQRSQ 2576
Query: 494 EQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLVTP-EDARK------ 546
+ ++E + FY + LDF SLYPSI++AYN C+ST + E+ K
Sbjct: 2577 MRAPQCVPLIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFSTCLGHIENLGKYDEFKF 2636
Query: 547 ----LNLPPEC-------VNKTPSGETFVKSNLQKGXXXXXXXXXXXXXXXXXXXXXXXX 595
L +PP+ + +P+G FVK +++KG
Sbjct: 2637 GCTSLRVPPDLLYQIRHDITVSPNGVAFVKPSVRKGVLPRMLEEILKTRFMVKQSMKAYR 2696
Query: 596 XPLEKA-VLDGRQLALKISANSVYGFTGATV-GQLPCIEISSSVTSYGRQMIEHTKKLVE 653
+ +L+ RQL LK+ AN +G+T A G++PCIE+ S+ R+ +E KLV
Sbjct: 2697 QDRALSRMLNARQLGLKLIANVTFGYTSANFSGRMPCIEVGDSIVHKARETLERAIKLVN 2756
Query: 654 DKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEK 713
D T G A V+YGDTDS+ V T E + K+G+E A+ ++ T KP+KL+FEK
Sbjct: 2757 D--TKKWG----ARVVYGDTDSMFVLLKGATKEQSFKIGQEIAEAVTATNPKPVKLKFEK 2810
Query: 714 VYYPYLLISKKRYAG-LYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRD 772
VY P +L +KKRY G +Y T +K D KGIETVRRD+C V ++ L + RD
Sbjct: 2811 VYLPCVLQTKKRYVGYMYETLDQKDPVFDAKGIETVRRDSCPAVSKILERSLKLLFETRD 2870
Query: 773 IPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAA--HVELAERMRKRDAAT 830
I QYV+ L+ + + + K + Y A +EL +M D +
Sbjct: 2871 ISLIKQYVQRQCMKLVEGKASIQDFIFAKEY-RGSFSYRPGACVPALELTRKMLAYDRRS 2929
Query: 831 APNVGDRVPYVIIKAAKGAKAYERSEDPIYVLEN-NIPIDTHYYLENQISKPLLRIFEPI 889
P VG+RVPYVI+ G + P VL++ + ++ YY+ QI PL RIF I
Sbjct: 2930 EPRVGERVPYVIVYGTPGLPLIQLIRRPAEVLQDPTLRLNATYYITKQILPPLARIFSLI 2989
Query: 890 ---LKNASKELLSGDHTRSISIST-PSNSGIMKFAKRQLSCIGCKALISNGTLCSHCKGR 945
+ + +EL S S S G + L C C L +G +CS C+ +
Sbjct: 2990 GIDVFSWYQELPRIQKATSSSRSDLEGRKGTISQYFTTLHCPVCDGLTQHG-ICSQCRSQ 3048
Query: 946 EAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEA 1005
+ +++ELE +L C+ C GS + + C S +CP+ ++ + +++++A
Sbjct: 3049 PQHVAIILNQEIRELERQQEQLVKICRNCTGSFDRHIPCVSLNCPVLFKLSRVNRELSKA 3108
Score = 151 (58.2 bits), Expect = 2.0e-77, Sum P(5) = 2.0e-77
Identities = 42/156 (26%), Positives = 72/156 (46%)
Query: 119 IIRIFGVTREGHSVCCKVHGFEPYFYISCP-QGMGPDD-ISHFHQILEGRMREANRN-SK 175
++R+FG T G C +HG PY Y+ G P+ +S ++ + A N S
Sbjct: 37 VVRVFGATPAGQKTCLHLHGVFPYLYVPYDGYGQQPERYLSQMALSIDRALNVALGNPSS 96
Query: 176 VPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFM 235
Q V + +V Y + K + F+KI + P MV +L G ++ K +
Sbjct: 97 TAQHVFKVSLVSGMPFYGYHE-KERHFMKIYLYNPAMVKRICELLQSGAIMN----KFYQ 151
Query: 236 TYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAK 271
+E+++ + L+ ID N+ G N I + K+RK +
Sbjct: 152 PHEAHIPYLLQLFIDYNLYGMNLINLAAVKFRKARR 187
Score = 62 (26.9 bits), Expect = 2.0e-77, Sum P(5) = 2.0e-77
Identities = 11/47 (23%), Positives = 25/47 (53%)
Query: 355 IVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
+ G++V E+ + + ++ DPD+++GY I YL+++
Sbjct: 2359 VTGLEVTYAADEKALFQEVTNIMKRYDPDILLGYEIQMHSWGYLLQR 2405
Score = 56 (24.8 bits), Expect = 2.0e-77, Sum P(5) = 2.0e-77
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 260 EVPVGKYRKTAKTLSYCQLEFDCLYSDIISR 290
E+P + + LS C+LE D + +DI++R
Sbjct: 218 EIPSSLLLEGVEPLSTCELEVDAVAADILNR 248
Score = 52 (23.4 bits), Expect = 1.9e-76, Sum P(4) = 1.9e-76
Identities = 24/91 (26%), Positives = 41/91 (45%)
Query: 407 SIISDLQNGNAETRRR---LAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPISFLLS 463
S+ S ++ E R+R L + K + QR L + + + + V +
Sbjct: 1459 SLRSPIKQITWEQRQRGCILEMSSFKPEKVKQRSLSEAISQTKALSQCKNQNVSTPSVFG 1518
Query: 464 RGQS-IKVLSQLLRKAKQKNLVIPNVKQAGS 493
GQS + VL +LL+K +QK NV+ + S
Sbjct: 1519 EGQSGLAVLKELLQKRQQKAQTT-NVQDSAS 1548
Score = 49 (22.3 bits), Expect = 6.9e-05, Sum P(4) = 6.9e-05
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 344 RNVMTLKSCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNIC 391
R+ M C P++ F + ++L DF + + P ++I YN C
Sbjct: 2574 RSQMRAPQCVPLIMEPESRFYSNSVLVL---DF-QSLYPSIVIAYNYC 2617
Score = 38 (18.4 bits), Expect = 2.0e-77, Sum P(5) = 2.0e-77
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 304 ILSFDIECAGRKGHFPEPTHDPV 326
++S ++ R+ P+P DP+
Sbjct: 2287 LISVELHARTRRDLQPDPEFDPI 2309
Score = 38 (18.4 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 628 LPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGD 672
LP SSV Y + T++ K++ + E +A I+ +
Sbjct: 649 LPVPSCESSVFDYEEDIPSVTRQAPSRKYSNMRKIEKDAPFIHAN 693
>UNIPROTKB|F1M8G6 [details] [associations]
symbol:Rev3l "DNA polymerase" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0016035 "zeta DNA polymerase complex" evidence=IEA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 RGD:1307087
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 CTD:5980
KO:K02350 GO:GO:0016035 GeneTree:ENSGT00550000074640
IPI:IPI00778278 RefSeq:NP_001077435.1 UniGene:Rn.8189
Ensembl:ENSRNOT00000057227 GeneID:309812 KEGG:rno:309812
NextBio:661358 ArrayExpress:F1M8G6 Uniprot:F1M8G6
Length = 3132
Score = 683 (245.5 bits), Expect = 2.1e-77, Sum P(5) = 2.1e-77
Identities = 189/600 (31%), Positives = 293/600 (48%)
Query: 436 RLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNL--VIPNVKQAGS 493
++L++L I EMAR+ G+ +L+RG +V S +LR AK N V P+V+Q
Sbjct: 2531 QMLEQLDLIGKTSEMARLFGIQFLHVLTRGSQYRVESMMLRIAKPMNYIPVTPSVQQRSQ 2590
Query: 494 EQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLVTP-EDARK------ 546
+ ++E + FY + LDF SLYPSI++AYN C+ST + E+ K
Sbjct: 2591 MRAPQCVPLIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFSTCLGHIENLGKYDEFKF 2650
Query: 547 ----LNLPPEC-------VNKTPSGETFVKSNLQKGXXXXXXXXXXXXXXXXXXXXXXXX 595
L +PP+ + +P+G FVK +++KG
Sbjct: 2651 GCTSLRVPPDLLYQIRHDITVSPNGVAFVKPSVRKGVLPRMLEEILKTRFMVKQSMKAYR 2710
Query: 596 XPLEKA-VLDGRQLALKISANSVYGFTGATV-GQLPCIEISSSVTSYGRQMIEHTKKLVE 653
+ +L+ RQL LK+ AN +G+T A G++PCIE+ S+ R+ +E KLV
Sbjct: 2711 QDRALSRMLNARQLGLKLIANVTFGYTSANFSGRMPCIEVGDSIVHKARETLERAIKLVN 2770
Query: 654 DKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEK 713
D T G A V+YGDTDS+ V T E + K+G+E A+ ++ T KP+KL+FEK
Sbjct: 2771 D--TKKWG----ARVVYGDTDSMFVLLKGATKEQSFKIGQEIAEAVTATNPKPVKLKFEK 2824
Query: 714 VYYPYLLISKKRYAG-LYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRD 772
VY P +L +KKRY G +Y T +K D KGIETVRRD+C V ++ L + RD
Sbjct: 2825 VYLPCVLQTKKRYVGYMYETLDQKDPVFDAKGIETVRRDSCPAVSKILERSLKLLFETRD 2884
Query: 773 IPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAA--HVELAERMRKRDAAT 830
I QYV+ L+ + + + K + Y A +EL +M D +
Sbjct: 2885 ISLIKQYVQRQCMKLVEGKASIQDFIFAKEY-RGSFSYRPGACVPALELTRKMLAYDRRS 2943
Query: 831 APNVGDRVPYVIIKAAKGAKAYERSEDPIYVLEN-NIPIDTHYYLENQISKPLLRIFEPI 889
P VG+RVPYVI+ G + P VL++ + ++ YY+ QI PL RIF I
Sbjct: 2944 EPRVGERVPYVIVYGTPGLPLIQLIRRPAEVLQDPTLRLNATYYITKQILPPLARIFSLI 3003
Query: 890 ---LKNASKELLSGDHTRSISIST-PSNSGIMKFAKRQLSCIGCKALISNGTLCSHCKGR 945
+ + +EL S S S G + L C C L +G +CS C+ +
Sbjct: 3004 GIDVFSWYQELPRIQKATSSSRSDLEGRKGTISQYFTTLHCPVCDGLTQHG-ICSQCRSQ 3062
Query: 946 EAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEA 1005
+ +++ELE +L C+ C GS + + C S +CP+ ++ + +++++A
Sbjct: 3063 PQHVAIILNQEIRELERQQEQLVKICRNCTGSFDRHIPCVSLNCPVLFKLSRVNRELSKA 3122
Score = 151 (58.2 bits), Expect = 2.1e-77, Sum P(5) = 2.1e-77
Identities = 42/156 (26%), Positives = 72/156 (46%)
Query: 119 IIRIFGVTREGHSVCCKVHGFEPYFYISCP-QGMGPDD-ISHFHQILEGRMREANRN-SK 175
++R+FG T G C +HG PY Y+ G P+ +S ++ + A N S
Sbjct: 37 VVRVFGATPAGQKTCLHLHGVFPYLYVPYDGYGQQPERYLSQMALSIDRALNVALGNPSS 96
Query: 176 VPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFM 235
Q V + +V Y + K + F+KI + P MV +L G ++ K +
Sbjct: 97 TAQHVFKVSLVSGMPFYGYHE-KERHFMKIYLYNPAMVKRICELLQSGAIMN----KFYQ 151
Query: 236 TYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAK 271
+E+++ + L+ ID N+ G N I + K+RK +
Sbjct: 152 PHEAHIPYLLQLFIDYNLYGMNLINLAAVKFRKARR 187
Score = 62 (26.9 bits), Expect = 2.1e-77, Sum P(5) = 2.1e-77
Identities = 11/47 (23%), Positives = 25/47 (53%)
Query: 355 IVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
+ G++V E+ + + ++ DPD+++GY I YL+++
Sbjct: 2373 VTGLEVTYAADEKALFQEVTNIMKRYDPDILLGYEIQMHSWGYLLQR 2419
Score = 56 (24.8 bits), Expect = 2.1e-77, Sum P(5) = 2.1e-77
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 260 EVPVGKYRKTAKTLSYCQLEFDCLYSDIISR 290
E+P + + LS C+LE D + +DI++R
Sbjct: 218 EIPSSLLLEGVEPLSTCELEVDAVAADILNR 248
Score = 52 (23.4 bits), Expect = 2.0e-76, Sum P(4) = 2.0e-76
Identities = 24/91 (26%), Positives = 41/91 (45%)
Query: 407 SIISDLQNGNAETRRR---LAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPISFLLS 463
S+ S ++ E R+R L + K + QR L + + + + V +
Sbjct: 1459 SLRSPIKQITWEQRQRGCILEMSSFKPEKVKQRSLSEAISQTKALSQCKNQNVSTPSVFG 1518
Query: 464 RGQS-IKVLSQLLRKAKQKNLVIPNVKQAGS 493
GQS + VL +LL+K +QK NV+ + S
Sbjct: 1519 EGQSGLAVLKELLQKRQQKAQTT-NVQDSAS 1548
Score = 49 (22.3 bits), Expect = 7.0e-05, Sum P(4) = 7.0e-05
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 344 RNVMTLKSCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNIC 391
R+ M C P++ F + ++L DF + + P ++I YN C
Sbjct: 2588 RSQMRAPQCVPLIMEPESRFYSNSVLVL---DF-QSLYPSIVIAYNYC 2631
Score = 38 (18.4 bits), Expect = 2.1e-77, Sum P(5) = 2.1e-77
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 304 ILSFDIECAGRKGHFPEPTHDPV 326
++S ++ R+ P+P DP+
Sbjct: 2301 LISVELHARTRRDLQPDPEFDPI 2323
Score = 38 (18.4 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 628 LPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGD 672
LP SSV Y + T++ K++ + E +A I+ +
Sbjct: 649 LPVPSCESSVFDYEEDIPSVTRQAPSRKYSNMRKIEKDAPFIHAN 693
>UNIPROTKB|Q8TSB3 [details] [associations]
symbol:MA_0885 "DNA polymerase" species:188937
"Methanosarcina acetivorans C2A" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005694
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0008408 GO:GO:0003887 GO:GO:0006297 EMBL:AE010299
GenomeReviews:AE010299_GR eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 OMA:RSFRPYF HSSP:Q56366
KO:K02319 RefSeq:NP_615844.1 ProteinModelPortal:Q8TSB3
GeneID:1472777 KEGG:mac:MA0885 ProtClustDB:CLSK568782
BioCyc:MACE188937:GI2O-954-MONOMER Uniprot:Q8TSB3
Length = 937
Score = 375 (137.1 bits), Expect = 3.2e-74, Sum P(3) = 3.2e-74
Identities = 92/231 (39%), Positives = 135/231 (58%)
Query: 668 VIYGDTDSVMVQF---GVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLLISKK 724
V YGDTDSV V G ++E +G ++ +S + P++LEFE V LLI+KK
Sbjct: 642 VAYGDTDSVFVHCKAKGDLSLEEVSLVGNRLSEIVSASLPDPMELEFESVAKRALLIAKK 701
Query: 725 RYAGLYWTNPEKF---DKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQYVK 781
RYA L+ P +K+ KG+ETVRRD C L + L +L++ D+ AV++V+
Sbjct: 702 RYA-LWLFEPRNSGWENKIKVKGMETVRRDWCELTSITLNRVLEFVLIEGDVDKAVEHVR 760
Query: 782 STISDL--LMNRMDLSL---LVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGD 836
+SD+ L D + LV+T+ LT+ D Y+ K H+ +AE ++KR P++G
Sbjct: 761 KVVSDVRNLDPGKDAGIIEKLVLTRTLTRKADSYKNKQPHLTVAENLKKR-TGIMPSIGT 819
Query: 837 RVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQISKPLLRIFE 887
R+P+VI A KG +R+EDP YV ENN+PID YY++ QI P+ RI E
Sbjct: 820 RIPFVIT-AGKGLFV-DRAEDPDYVRENNVPIDVDYYVKKQILPPVERILE 868
Score = 272 (100.8 bits), Expect = 3.2e-74, Sum P(3) = 3.2e-74
Identities = 80/262 (30%), Positives = 129/262 (49%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
EK DV + + N + + R+ Y +D+ L L+ +L + Y+ +A+V+G +
Sbjct: 357 EKLDVPPLEMEEHWNDSGDKFRKFVDYARRDSELALELVLELRLLDKYIALAQVSGSLLQ 416
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVI-PNV-KQAGSEQ----GTYEGATVLEARAGFYEK 513
++ GQ+ V + LLR+ K+ VI P + +E+ +G VLE + G E
Sbjct: 417 EIVDGGQTSMVETLLLREFGLKDRVILPKPGDELSAERYDMSSDLKGGEVLEPKKGLLEN 476
Query: 514 PIATLDFASLYPSIMMAYNLCYSTLVTPEDARKLNLPPECVNKTPSGETFVKSNLQKGXX 573
+ LD+ SLYP+IMMA+NLCY+T+VT + P K PSG FV + +G
Sbjct: 477 -VLILDYKSLYPTIMMAHNLCYTTVVTRDR------PDGKTIKPPSGGEFVPPEVFRGIV 529
Query: 574 XXXXXXXXXXXXXXXXXXXXXXXPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEI 633
E VLD QLA+KI NS YG++G +L + +
Sbjct: 530 PSILEDLLNKRGDTKKRMKRTSDENEHRVLDATQLAIKILLNSFYGYSGYARARLYSLTL 589
Query: 634 SSSVTSYGRQMIEHTKKLVEDK 655
+++VTS+GR I +T+ L+ +
Sbjct: 590 ANAVTSFGRSNILNTRDLINGR 611
Score = 240 (89.5 bits), Expect = 3.2e-74, Sum P(3) = 3.2e-74
Identities = 88/313 (28%), Positives = 151/313 (48%)
Query: 96 LDIDYVIGDSNRELLPLSSGSAAIIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDD 155
+ +D+ I D++ E++ + S +IR+FG +G SVCC V FEPYFY+ G D
Sbjct: 1 MPMDFQILDADYEVV---NDSGPVIRLFGRGADGKSVCCFVPDFEPYFYLKA-SG----D 52
Query: 156 ISHFHQILEGRMREANRNSKVPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVAS 215
+ ++++ + V+ +E+V+K + YQ+ K + L++ LP V
Sbjct: 53 LHAVARLIKDTFEQ----------VKKVEIVEKFEPVGYQKTKKE-MLRVTTRLPKDVPE 101
Query: 216 CRG-ILD-RGI---QLDGLGMKSFMTYESNVLF--ALRFMIDCNIVGGNWIEVPVGKYRK 268
R IL R + + D +S + + + L AL M+ + G ++ PV
Sbjct: 102 IRDEILKIRDVLRAEGDWQVYESDILFRNRFLIDRALGGMVWVS-AEGKPVD-PVRYLGA 159
Query: 269 TAKTLSYCQLEFDCLYSDIISRHPEGEFSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQ 328
+ S C+ F C + + S E +AP + L+FDIEC G P P P+I
Sbjct: 160 GSAWRSRCE-NFACDSAVLASGLKRVENLAIAPLKYLAFDIECLPLDGGMPSPDVSPIIM 218
Query: 329 VANLVTLQGEKQPFIRNVMTLKSCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGY 388
++ + + E + ++ K A + G DV+S E ++L + + I E DPD++ GY
Sbjct: 219 IS--FSFEPEYKGHKTLILLAKPAAGMDG-DVLSCMDETEMLNKFFEIICEYDPDIVAGY 275
Query: 389 NICKFDLPYLIEK 401
N FD+PY+ E+
Sbjct: 276 NHQDFDIPYITER 288
>UNIPROTKB|F1P7E8 [details] [associations]
symbol:REV3L "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260
GeneTree:ENSGT00550000074640 EMBL:AAEX03008609 EMBL:AAEX03008610
Ensembl:ENSCAFT00000006343 Uniprot:F1P7E8
Length = 3058
Score = 704 (252.9 bits), Expect = 4.3e-74, Sum P(4) = 4.3e-74
Identities = 194/600 (32%), Positives = 294/600 (49%)
Query: 436 RLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNL--VIPNVKQAGS 493
++L++L I EMAR+ G+ +L+RG +V S +LR AK N V P+V+Q
Sbjct: 2457 QMLEQLDLIGKTSEMARLFGIQFLHVLTRGSQYRVESMMLRIAKPMNYIPVTPSVQQRSQ 2516
Query: 494 EQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYST-LVTPEDARK------ 546
+ ++E + FY + LDF SLYPSI++AYN C+ST L E+ K
Sbjct: 2517 MRAPQCVPLIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFSTCLGHVENLGKYDEFKF 2576
Query: 547 ----LNLPPEC-------VNKTPSGETFVKSNLQKGXXXXXXXXXXXXXXXXXXXXXXXX 595
L +PP+ + +P+G FVK +++KG
Sbjct: 2577 GCTSLRVPPDLLYQIRHDITVSPNGIAFVKPSVRKGVLPRMLEEILKTRLMVKQSMKAYK 2636
Query: 596 XPLEKA-VLDGRQLALKISANSVYGFTGATV-GQLPCIEISSSVTSYGRQMIEHTKKLVE 653
+ +LD RQL LK+ AN +G+T A G++PCIE+ S+ R+ +E KLV
Sbjct: 2637 QDRALSRMLDARQLGLKLIANVTFGYTAANFSGRMPCIEVGDSIVHKARETLERAIKLVN 2696
Query: 654 DKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEK 713
D T G A V+YGDTDS+ V T E + K+G+E A+ ++ T KP+KL+FEK
Sbjct: 2697 D--TKKWG----ARVVYGDTDSMFVLLKGATKEQSFKIGQEIAEAVTATNPKPVKLKFEK 2750
Query: 714 VYYPYLLISKKRYAG-LYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRD 772
VY P +L +KKRY G +Y T +K D KGIETVRRD+C V ++ L + RD
Sbjct: 2751 VYLPCVLQTKKRYVGYMYETLDQKDPVFDAKGIETVRRDSCPAVSKILERSLKLLFETRD 2810
Query: 773 IPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAA--HVELAERMRKRDAAT 830
I QYV+ LL + + + K + Y+ A +EL +M D +
Sbjct: 2811 ISLIKQYVQRQCMKLLEGKASIQDFIFAKEY-RGSSSYKPGACVPALELTRKMLTYDRRS 2869
Query: 831 APNVGDRVPYVIIKAAKGAKAYERSEDPIYVLEN-NIPIDTHYYLENQISKPLLRIFEPI 889
P VG+RVPYVII G + P+ VL++ + ++ YY+ QI PL RIF I
Sbjct: 2870 EPRVGERVPYVIIYGTPGVPLIQLVRRPVEVLQDPTLRLNATYYITKQILPPLARIFSLI 2929
Query: 890 ---LKNASKELLSGDHTRSISISTPSN-SGIMKFAKRQLSCIGCKALISNGTLCSHCKGR 945
+ N EL S S S P G + L C C L +G +CS C+ +
Sbjct: 2930 GIDVFNWYHELPRIQKATSSSRSEPEGRKGTISQYFTTLHCPVCDDLTQHG-ICSKCRSQ 2988
Query: 946 EAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEA 1005
+ +++ELE +L C+ C G + + C S +CP+ ++ + +++++A
Sbjct: 2989 PQHVAVILNQEIRELERKQEQLVKICKNCTGCFDRHIPCVSLNCPVLFKLSRVNRELSKA 3048
Score = 90 (36.7 bits), Expect = 4.3e-74, Sum P(4) = 4.3e-74
Identities = 26/98 (26%), Positives = 46/98 (46%)
Query: 174 SKVPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKS 233
S Q V + +V Y + K + F+KI + P MV +L G ++ K
Sbjct: 17 SSTAQHVFKVSLVSGMPFYGYHE-KEKHFMKIYLYNPAMVKRICELLQSGAIMN----KF 71
Query: 234 FMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAK 271
+ +E+++ + L+ ID N+ G N I + K+RK +
Sbjct: 72 YQPHEAHIPYLLQLFIDYNLYGMNLINLAAVKFRKARR 109
Score = 71 (30.1 bits), Expect = 4.3e-74, Sum P(4) = 4.3e-74
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 355 IVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
I G++V E+ + D I+ DPD+++GY I YL+++
Sbjct: 2299 ITGLEVTYAPDEKALFQEIADIIKRYDPDILLGYEIQMHSWGYLLQR 2345
Score = 50 (22.7 bits), Expect = 6.4e-70, Sum P(4) = 6.4e-70
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 260 EVPVGKYRKTAKTLSYCQLEFDCLYSDIISR 290
E+P + + S C+LE D + +DI++R
Sbjct: 140 EIPSSLILEGVEPQSTCELEVDAVAADILNR 170
Score = 45 (20.9 bits), Expect = 2.6e-71, Sum P(3) = 2.6e-71
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 451 ARVTGVPISFLLSRGQS-IKVLSQLLRKAKQK 481
+R P +F GQS + VL +LL+K +QK
Sbjct: 1435 SRNVSTPSAF--GEGQSGLAVLKELLQKRQQK 1464
Score = 38 (18.4 bits), Expect = 4.3e-74, Sum P(4) = 4.3e-74
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 304 ILSFDIECAGRKGHFPEPTHDPV 326
++S ++ R+ P+P DP+
Sbjct: 2227 LISVELHARTRRDLEPDPEFDPI 2249
>UNIPROTKB|Q8X1U8 [details] [associations]
symbol:UPR1 "DNA polymerase" species:5141 "Neurospora
crassa" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005694
"chromosome" evidence=IBA] [GO:0016035 "zeta DNA polymerase
complex" evidence=IBA] [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 GO:GO:0016035 HOGENOM:HOG000194392
OrthoDB:EOG4FN7RT EMBL:AB077040 ProteinModelPortal:Q8X1U8
STRING:Q8X1U8 Uniprot:Q8X1U8
Length = 1926
Score = 566 (204.3 bits), Expect = 2.2e-71, Sum P(5) = 2.2e-71
Identities = 156/494 (31%), Positives = 240/494 (48%)
Query: 426 YCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVI 485
Y L L +L+K I E AR+ GV + SRG KV S + R AK +N ++
Sbjct: 1144 YYLTRTRLDIEILEKNELIPRTSEQARLLGVDFFSVFSRGSQFKVESIMFRIAKPENFLL 1203
Query: 486 PNV--KQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYST----LV 539
P+ KQ G++ V+E ++ FY P+ LDF SLYPS+M+AYN CYST +V
Sbjct: 1204 PSPSRKQVGAQNALECLPLVMEPQSAFYSSPLLVLDFQSLYPSVMIAYNYCYSTFLGRIV 1263
Query: 540 TPEDARK------------LNLPPECVNKTPSGETFVKSNLQKGXXXXXXXXXXXXXXXX 587
+ K L+L + +N P+G + K +++K
Sbjct: 1264 SWRGRNKMGFMDYKRQEGLLSLLKDYINIAPNGMMYTKPHIRKSLLAKMLTEILETRIMV 1323
Query: 588 XXXXXXXXXPLE-KAVLDGRQLALKISANSVYGFTGATV-GQLPCIEISSSVTSYGRQMI 645
+ +L+ RQLALK+ AN YG+T A+ G++PC EI+ S+ GR+ +
Sbjct: 1324 KSGMKQDKDDRAIQQLLNNRQLALKLLANVTYGYTSASFSGRMPCSEIADSIVQTGRETL 1383
Query: 646 EHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIK 705
E + +V ++ A+V+YGDTDS+ V T E A ++G+E AD ++ +
Sbjct: 1384 ERAIAFIH----SVQKWD--ADVVYGDTDSLFVSLKGRTREQAFEIGQEIADAVTKLNPR 1437
Query: 706 PIKLEFEKVYYPYLLISKKRYAGL-YWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECL 764
P+KL+FEKVY+P +L++KKRY G Y + + D KGIETVRRD + + + L
Sbjct: 1438 PVKLKFEKVYHPCVLLAKKRYVGYKYESRDQTVPVFDAKGIETVRRDGTPAEQRIEEKAL 1497
Query: 765 HKILVDR-DIPGAVQYVKSTISDLLMNRMDLSLLVITK----GLTKTGDDYEVKAAHVEL 819
KIL + D+ Y + ++ + + + G T A +
Sbjct: 1498 -KILFETADLSQVKSYFQEQCHKIMRGAVSVQDFCFAREVKLGTYSTSGRGGPAPAGALI 1556
Query: 820 AERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLEN-NIPIDTHYYLENQI 878
A + K DA P G+RVPYV++ A G + +R +P +L N + +D YY+ I
Sbjct: 1557 ATKKMKEDARAEPQYGERVPYVVMAGAPGMRLVDRCVEPEELLNNAHATLDADYYINKNI 1616
Query: 879 SKPLLRIFEPILKN 892
PL RIF + N
Sbjct: 1617 IPPLERIFNLVGAN 1630
Score = 157 (60.3 bits), Expect = 2.2e-71, Sum P(5) = 2.2e-71
Identities = 39/150 (26%), Positives = 75/150 (50%)
Query: 119 IIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANRNSKVPQ 178
+IR+FG T +G VC +HG PY Y+ + P+ H + ++ R+ P+
Sbjct: 42 VIRVFGSTDKGQKVCAHIHGAFPYLYVEYDGNLEPNKD---HALAISYRKDPIRDR--PK 96
Query: 179 FVRHIEMVQKRSIMYYQQQKSQPF-LKIVVALPTMVASCRGILDRGIQLDGLGMKSFMTY 237
+V I + + I +Y F LKI + P +++ +L +G+ + + F Y
Sbjct: 97 YVARISLT--KGIPFYGFHVGYRFYLKIYLFNPVVMSRLVDLLQQGVIMS----RKFQPY 150
Query: 238 ESNVLFALRFMIDCNIVGGNWIEVPVGKYR 267
E+++ + L+FM D N+ G N+++ + +R
Sbjct: 151 EAHLQYLLQFMADYNLYGCNYLDAAMATFR 180
Score = 107 (42.7 bits), Expect = 2.2e-71, Sum P(5) = 2.2e-71
Identities = 22/70 (31%), Positives = 33/70 (47%)
Query: 938 LCSHCKGREAELYCKTVSQVQELEVLFGRLWTQCQECQG-SLHQDVLCTSRDCPIFYRRK 996
LC C L ++V E + + CQ C G +L ++V C S+DCP+FY R
Sbjct: 1759 LCHRCASDPPTLMVDMQAKVNRAEKSYVEIMKVCQSCAGFALSEEVPCDSKDCPVFYSRV 1818
Query: 997 KAQKDMAEAK 1006
K + + K
Sbjct: 1819 KQRTKVTAVK 1828
Score = 75 (31.5 bits), Expect = 2.2e-71, Sum P(5) = 2.2e-71
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 358 VDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEKEDVHHSI 408
V V+ TE D+++ + +R DPD+ GY + YLIE+ + + +
Sbjct: 999 VPVVQETTELDMMVRMVEIVRNHDPDIFTGYEVHGSSWGYLIERARIKYEL 1049
Score = 49 (22.3 bits), Expect = 6.5e-12, Sum P(4) = 6.5e-12
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 332 LVTLQGEKQPFIRNVMTLKSCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNIC 391
L+ KQ +N + C P+V +F + ++L DF + + P VMI YN C
Sbjct: 1202 LLPSPSRKQVGAQNAL---ECLPLVMEPQSAFYSSPLLVL---DF-QSLYPSVMIAYNYC 1254
Score = 44 (20.5 bits), Expect = 2.2e-71, Sum P(5) = 2.2e-71
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 274 SYCQLEFDCLYSDIISR 290
S+C LE D DI++R
Sbjct: 219 SHCSLEVDICVEDILNR 235
Score = 40 (19.1 bits), Expect = 9.2e-56, Sum P(3) = 9.2e-56
Identities = 18/69 (26%), Positives = 30/69 (43%)
Query: 386 IGYNICKFDLPYLIEKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIF 445
+GY +F L + V ++ LQ G +R+ Y YL Q + D ++
Sbjct: 114 VGY---RFYLKIYLFNPVVMSRLVDLLQQGVIMSRK-FQPYEAHLQYLLQFMADYNLYGC 169
Query: 446 NYVEMARVT 454
NY++ A T
Sbjct: 170 NYLDAAMAT 178
>POMBASE|SPAC688.10 [details] [associations]
symbol:rev3 "DNA polymerase zeta catalytic subunit Rev3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0016035 "zeta DNA
polymerase complex" evidence=ISO] [GO:0042276 "error-prone
translesion synthesis" evidence=ISO] [GO:0043504 "mitochondrial DNA
repair" evidence=IC] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
[GO:0070987 "error-free translesion synthesis" evidence=ISO]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISO]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 PomBase:SPAC688.10
GO:GO:0005829 GO:GO:0005739 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0051539 GO:GO:0043596 SUPFAM:SSF53098 GO:GO:0003887
GO:GO:0070987 GO:GO:0043504 GO:GO:0042276 eggNOG:COG0417
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 KO:K02350 GO:GO:0016035 RefSeq:NP_594068.1 HSSP:P21189
ProteinModelPortal:Q9P6L6 STRING:Q9P6L6 EnsemblFungi:SPAC688.10.1
GeneID:2543358 KEGG:spo:SPAC688.10 HOGENOM:HOG000194392 OMA:RVPYLII
OrthoDB:EOG4FN7RT NextBio:20804373 Uniprot:Q9P6L6
Length = 1480
Score = 645 (232.1 bits), Expect = 2.0e-70, Sum P(3) = 2.0e-70
Identities = 202/689 (29%), Positives = 316/689 (45%)
Query: 367 RDVLLAWRDFIREVDPDVMIGY-------NICKFDLPYLIEKEDVHHSIISDLQNGNAET 419
R VL WR EV+ ++ Y NI K PY + + VH Q+
Sbjct: 802 RHVLNIWRILRGEVN---LLNYSLENVVLNIFKKQTPYYNQADKVHL-----WQSSRFHE 853
Query: 420 RRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAK 479
++ L Y L +L + E AR+ G+ ++SRG KV S + R AK
Sbjct: 854 KQILLNYMLNRTRYCLEILSACAIVTKIREQARIIGIDFMSVISRGSQFKVESIMFRIAK 913
Query: 480 QKNLVIPN--VKQAGSEQGTYEGAT-VLEARAGFYEKPIATLDFASLYPSIMMAYNLCYS 536
+N + P+ KQ +EQ E V+E ++ Y P+ LDF SLYPSI++AYNLCYS
Sbjct: 914 PENYIFPSPSAKQV-AEQNALEALPLVMEPKSDLYNNPVVVLDFQSLYPSIIIAYNLCYS 972
Query: 537 TLVTPEDA--RKLNLP-------PECVNK-------TPSGETFVKSNLQKGXXXXXXXXX 580
T + P K+ L P VN +P+G +VK N++K
Sbjct: 973 TCLGPVKIVNGKVKLGFMFHSSNPNIVNLIKNDVYISPNGYAYVKENVRKSLLAKMLEEL 1032
Query: 581 XXXXXXXXXXXXXXXXPLEKAVLDGRQLALKISANSVYGFTGATV-GQLPCIEISSSVTS 639
VL+ RQLALK+ AN YG+T A+ G++PC EI+ ++
Sbjct: 1033 IETRNMVKRGMKDCDSDYVNKVLNSRQLALKLIANVTYGYTSASFSGRMPCSEIADTIVE 1092
Query: 640 YGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYI 699
GR+++ ++ + + T+ + H A+V+YGDTDS+ V+ T E A +G++ A+ I
Sbjct: 1093 TGREILSYSLEYIN----TLD-FCH-AKVVYGDTDSLFVELPGATKEQAFDIGQQLANNI 1146
Query: 700 SGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTN-PEKFDKMDTKGIETVRRDNCLLVKN 758
+ F PI+L+FEK+Y+P L++KKRY G + + +K + KGIETVRRD + +
Sbjct: 1147 TSRFPSPIRLKFEKIYFPCFLLAKKRYVGFKFESVSQKAPIFEAKGIETVRRDGTPVQQQ 1206
Query: 759 LVTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDY-EVKAAH- 816
L+ CL + +D+ + ++ ++ + + +K + + Y E+ A
Sbjct: 1207 LLRRCLEILFKTKDLSTVKKEFQNVCYQIMSGNVPVMDFCFSKEVRL--EKYKELSTAPP 1264
Query: 817 -VELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIP-IDTHYYL 874
+A R+ +D P G+RVPY+II AA G RS P L ++ +D +YY+
Sbjct: 1265 GAVMARRLMTKDPRREPQYGERVPYLIIAAAPGTTLANRSVAPEEFLSSSFSQLDINYYI 1324
Query: 875 ENQISKPLLRIFEPILKNASKELLSGDHTR-SISISTPSNSGIMK-----FAKRQLSCIG 928
N + PL R + +A R S+ ++ GI K F +L C
Sbjct: 1325 NNSLIPPLDRFLNLLGASAQSWYHEMPKPRTSLKLTETVKGGIQKKTLDTFLMEKL-CSS 1383
Query: 929 CKA----LISN--GTLCSHCKGREAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQD- 981
C +I + +LCS C K V+Q L+ C+ C D
Sbjct: 1384 CLKNNIEIIPDKINSLCSDCLKNPCATISKAVTQHNAYNKKLSLLFDICRGCSKLSSSDP 1443
Query: 982 VLCTSRDCPIFYRRKKAQKDMAEAKLQLD 1010
VLC S C ++Y R K + AK+Q +
Sbjct: 1444 VLCKSNSCKVYYDRAKTEN---YAKVQAE 1469
Score = 132 (51.5 bits), Expect = 2.0e-70, Sum P(3) = 2.0e-70
Identities = 47/171 (27%), Positives = 79/171 (46%)
Query: 119 IIRIFGVTREGHSVCCKVHGFEPYFYI---SCPQGMG---PDDISHFHQILEGRMR---E 169
+IR+FG+ E +VCC +H PY Y+ S + + PD +S + +
Sbjct: 38 VIRVFGLNEEAETVCCFIHNVFPYIYVEYSSFAETLDLEVPDFLSQLQTSINYALALAAR 97
Query: 170 ANRNSKVPQFVRHIEMVQKRSIMYYQQQKS-QPFLKIVVALPTMVASCRGILDRGIQLDG 228
AN + P V+ +++V + I +Y Q FLKI + P + +G L+
Sbjct: 98 ANPETYKPA-VQSVQLV--KGIPFYGYSFCFQKFLKICLFSPKNRDRLVDLFRQGAILN- 153
Query: 229 LGMKSFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAKTLSYCQLE 279
K YES++ + L+FM+D N+ G I++ K LS+C +E
Sbjct: 154 ---KVIQVYESHLPYLLQFMVDHNLYGCAPIDLD-DSIIKRDDLLSFCNVE 200
Score = 59 (25.8 bits), Expect = 2.0e-70, Sum P(3) = 2.0e-70
Identities = 22/107 (20%), Positives = 45/107 (42%)
Query: 303 RILSFDIECAGRKGHFPEPTHDPV-----IQVANLVTLQGEKQPFI---RNVMTLKSCAP 354
RIL+ ++ C G P+PT D + ++ + ++ FI ++
Sbjct: 652 RILALELFCCSHGGLTPDPTKDSIECCFWAYQEDVNSSMIDRVGFIVVDKSASNSSFGRS 711
Query: 355 IVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
V+ +E +++ R++DP ++ GY + YLIE+
Sbjct: 712 FPSCTVLVVNSELELINEVIGLNRQLDPTIVCGYEVHNSSWGYLIER 758
>ASPGD|ASPL0000070569 [details] [associations]
symbol:uvsI species:162425 "Emericella nidulans"
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISA] [GO:0006281 "DNA repair" evidence=IMP]
[GO:0042276 "error-prone translesion synthesis" evidence=ISA;IMP]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0016035 "zeta DNA polymerase complex"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0070987 "error-free
translesion synthesis" evidence=IEA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 EMBL:BN001303 GO:GO:0003887
EMBL:AACD01000081 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 KO:K02350 HOGENOM:HOG000194392
RefSeq:XP_662393.1 ProteinModelPortal:G5EB69
EnsemblFungi:CADANIAT00005633 GeneID:2872590 KEGG:ani:AN4789.2
OMA:INIWRAM Uniprot:G5EB69
Length = 1681
Score = 621 (223.7 bits), Expect = 4.9e-69, Sum P(4) = 4.9e-69
Identities = 176/585 (30%), Positives = 274/585 (46%)
Query: 449 EMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKN--LVIPNVKQAGSEQGTYEGATVLEA 506
E AR+ G+ + SRG KV S + R AK +N LV P+ KQ G + V+E
Sbjct: 1076 EQARLLGIDFYSVFSRGSQFKVESLMFRIAKPENFILVSPSRKQVGQQNALECLPLVMEP 1135
Query: 507 RAGFYEKPIATLDFASLYPSIMMAYNLCYSTLVTPEDA----RKL-----NLPPEC---- 553
++ FY P+ LDF SLYPSIM+AYN CYST + + K+ N PP
Sbjct: 1136 QSDFYTSPLIVLDFQSLYPSIMIAYNYCYSTFLGRVQSWRGRNKMGFLDYNRPPRLLELL 1195
Query: 554 ---VNKTPSGETFVKSNLQKGXXXXXXXXXXXXXXXXXXXXXXXXXPLE-KAVLDGRQLA 609
+N P+G + +S ++K + +L+ RQLA
Sbjct: 1196 KDHINIAPNGMIYARSEVRKSLLAKMLTEILETRVMVKTGMKVDKDDRALQRLLNNRQLA 1255
Query: 610 LKISANSVYGFTGATV-GQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYEHNAEV 668
LK+ AN YG+T A+ G++PC EI+ S+ GR+ +E + +V + AEV
Sbjct: 1256 LKLIANVTYGYTSASFSGRMPCSEIADSIVQSGRETLEKAIAFIH----SVERW--GAEV 1309
Query: 669 IYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLLISKKRYAG 728
+YGDTDS+ V T + A +G E A ++ P+KL+FEKVY+P +L++KKRY G
Sbjct: 1310 VYGDTDSLFVYLKGRTRDQAFDIGEEIAQAVTNMNPHPVKLKFEKVYHPCVLLAKKRYVG 1369
Query: 729 L-YWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQYVKSTISDL 787
Y +K + D KGIETVRRD + + + L + D+ Y +S + +
Sbjct: 1370 FKYEHRNQKEPEFDAKGIETVRRDGTPAEQKIEEKALKLLFRTADLSQVKSYFQSQCTKI 1429
Query: 788 LMNRMDLSLLVITKGLTKTGDDYE--VKAAHVELAERMRKRDAATAPNVGDRVPYVIIKA 845
+ R+ + + + K G E A ++ + D P G+RVPYV++
Sbjct: 1430 MQGRVSVQDFCFARAV-KLGTYSENGTLPAGALISTKKMLEDPRAEPQYGERVPYVVVTG 1488
Query: 846 AKGAKAYERSEDPIYVLEN-NIPIDTHYYLENQISKPLLRIFEPILKNASK---ELLSGD 901
A G++ +R P +L++ + +D YY+ I PL RIF + N + E+
Sbjct: 1489 APGSRLIDRCVPPETLLQDAQLDLDAEYYITKNIIPPLERIFNLVGANVRQWYDEMPKVH 1548
Query: 902 HTRSISISTPSNSG------IMKFAKRQLSCIGCKALISNGTL--CSHCKGREAELYCKT 953
R + T S +G ++ + SC+ CKA + + + CS C + +
Sbjct: 1549 RIRRVE-GTSSLAGGKSSIRTLESYMKASSCVVCKAKLYDAEIPVCSDCVRQPHVSLLEL 1607
Query: 954 VSQVQELEVLFGRLWTQCQECQG-SLHQDVLCTSRDCPIFYRRKK 997
VS+ + E L C+ C +V C S DCP+FY R +
Sbjct: 1608 VSRQRHAEQRVATLERICRSCMDVPFGDEVKCDSLDCPVFYARTR 1652
Score = 145 (56.1 bits), Expect = 4.9e-69, Sum P(4) = 4.9e-69
Identities = 46/179 (25%), Positives = 78/179 (43%)
Query: 98 IDYVIGDSNRELLPLSSGSAAIIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDIS 157
+ Y G++ + +P +IRIFG T G +C VHG PY Y+ + PD +
Sbjct: 25 LPYRDGNNEKGYMP----KVPVIRIFGTTETGQKICVHVHGAFPYLYVQYDGDLSPDSVR 80
Query: 158 H----FHQILEGRMREA---NRNSKVPQFVRHIEMVQKRSIMYYQQQKSQPFL-KIVVAL 209
H ++ + + N + K FV HI +V + + +Y F KI +
Sbjct: 81 SAARSLHLSIDHALAVSYRRNAHDKKTVFVAHITLV--KGVPFYGYHVGYRFFFKIYLLN 138
Query: 210 PTMVASCRGILDRGIQLDGLGMKS-FMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYR 267
P + +L L G MK YES++ + ++M D N+ G +++ K+R
Sbjct: 139 PIYITRLADLL-----LQGAVMKRPIQPYESHLQYVPQWMCDYNLFGCAFMKCGKAKFR 192
Score = 62 (26.9 bits), Expect = 4.9e-69, Sum P(4) = 4.9e-69
Identities = 23/85 (27%), Positives = 39/85 (45%)
Query: 320 EPTH-DPVIQVANL-VTLQGEKQ-PFIRNVMTLKSCAPIVGVDVMSFETERDVLLAWRDF 376
EP D + V N+ V QGE++ P + L+ + TE D++ D
Sbjct: 874 EPQEEDDSLSVVNMGVVFQGEEEYPESKISKALR-------FECEHESTELDLINRLVDI 926
Query: 377 IREVDPDVMIGYNICKFDLPYLIEK 401
+R DPD++ GY + ++IE+
Sbjct: 927 VRLHDPDIITGYEVHNSSWGFIIER 951
Score = 52 (23.4 bits), Expect = 4.2e-05, Sum P(3) = 4.2e-05
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 352 CAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNIC 391
C P+V F T ++L DF + + P +MI YN C
Sbjct: 1128 CLPLVMEPQSDFYTSPLIVL---DF-QSLYPSIMIAYNYC 1163
Score = 44 (20.5 bits), Expect = 4.9e-69, Sum P(4) = 4.9e-69
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 274 SYCQLEFDCLYSDIISRHPEGEFSKMAPFR 303
S+C LE D DI++R E S FR
Sbjct: 228 SHCPLEADVCVQDILNRLEISERSIHHDFR 257
Score = 37 (18.1 bits), Expect = 1.1e-55, Sum P(2) = 1.1e-55
Identities = 5/14 (35%), Positives = 10/14 (71%)
Query: 193 YYQQQKSQPFLKIV 206
+YQ K + F+K++
Sbjct: 1038 WYQSDKPRDFMKVI 1051
>FB|FBgn0002891 [details] [associations]
symbol:mus205 "mutagen-sensitive 205" species:7227
"Drosophila melanogaster" [GO:0016035 "zeta DNA polymerase complex"
evidence=ISS;IBA;NAS] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS;IDA;NAS] [GO:0006260 "DNA replication"
evidence=IEA;NAS] [GO:0019985 "translesion synthesis"
evidence=IBA;NAS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IDA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IMP]
[GO:0005634 "nucleus" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 EMBL:AE013599 GO:GO:0005634
GO:GO:0005694 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0000724 SUPFAM:SSF53098 GO:GO:0003887 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 KO:K02350 GO:GO:0016035 GeneTree:ENSGT00550000074640
FlyBase:FBgn0002891 EMBL:AF298216 RefSeq:NP_524881.2
UniGene:Dm.10622 SMR:Q9GSR1 MINT:MINT-864058 STRING:Q9GSR1
EnsemblMetazoa:FBtr0088831 GeneID:47186 KEGG:dme:Dmel_CG1925
UCSC:CG1925-RA CTD:47186 InParanoid:Q9GSR1 OMA:IPPLNRC
GenomeRNAi:47186 NextBio:838931 Uniprot:Q9GSR1
Length = 2130
Score = 489 (177.2 bits), Expect = 1.4e-68, Sum P(4) = 1.4e-68
Identities = 162/577 (28%), Positives = 259/577 (44%)
Query: 475 LRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLC 534
+ K K + P+V+ + A ++E ++ FY P+ LDF SLYPS+++AYN C
Sbjct: 1562 IAKPKNLVPLSPSVQARAHMRAPEYLALIMEPQSRFYADPLIVLDFQSLYPSMIIAYNYC 1621
Query: 535 YSTLV---------TPED--ARKLNLPPECVNK---------TPSGETFVKSNLQKGXX- 573
+ST + +P + A +L + + + K +P G FVK +++G
Sbjct: 1622 FSTCLGRVEHLGGSSPFEFGASQLRVSRQMLQKLLEHDLVTVSPCGVVFVKREVREGILP 1681
Query: 574 -XXXXXXXXXXXXXXXXXXXXXXXPLEKAVLDGRQLALKISANSVYGFTGATV-GQLPCI 631
L++ +L RQL LK+ AN YG+T A G++P +
Sbjct: 1682 RMLTEILDTRQMVKQSMKLHKDSSALQR-ILHSRQLGLKLMANVTYGYTAANFSGRMPSV 1740
Query: 632 EISSSVTSYGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKL 691
E+ SV S GR+ +E KLVE+ E V+YGDTDS+ V A ++
Sbjct: 1741 EVGDSVVSKGRETLERAIKLVENN------EEWKVRVVYGDTDSMFVLVPGRNRAEAFRI 1794
Query: 692 GREAADYISGTFIKPIKLEFEKVYYPYLLISKKRYAG-LYWTNPEKFDKMDTKGIETVRR 750
G E A ++ +P+KL+ EKVY P +L +KKRY G +Y T ++ + KGIETVRR
Sbjct: 1795 GEEIAKAVTEMNPQPVKLKLEKVYQPCMLQTKKRYVGYMYETADQEQPVYEAKGIETVRR 1854
Query: 751 DNCLLVKNLVTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDY 810
D C V ++ + L + +D+ YV + LL R +L L+ K + Y
Sbjct: 1855 DGCPAVAKMLEKVLRILFETQDVSKIKAYVCRQFTKLLSGRANLQDLIFAKEFRGL-NGY 1913
Query: 811 EVKAA--HVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENN-IP 867
+ A +EL + ++D P G+RVP++I+ G + P +L N
Sbjct: 1914 KPTACVPALELTRKWMQKDPRHVPRRGERVPFIIVNGPPGMQLIRLVRSPHDILANEGHK 1973
Query: 868 IDTHYYLENQISKPLLRIFEPILKN-----AS--KELL---SGDHTRSISISTPSNSGIM 917
I+ YY+ I PL R I N AS ++LL + ++ + + S I
Sbjct: 1974 INAIYYITKAIIPPLNRCLLLIGANVHDWFASLPRKLLMTPAVGTANELAGARGAKSTIS 2033
Query: 918 KFAKRQLSCIGCKALISNGTLCSHCKGREAELYCKTVSQVQELEVLFGRLWTQ-CQECQG 976
++ I C G +C C + LE + +L Q CQ C G
Sbjct: 2034 QYFSTTSCVIDCGRQTKAG-ICPDCLKNATTCVVVLSDKTARLERGY-QLTRQICQACCG 2091
Query: 977 SLHQDVLCTSRDCPIFYRRKKAQKDMAEAKLQLDRWN 1013
L + C S DCP+ Y + ++++ Q++ WN
Sbjct: 2092 RLGS-LQCDSLDCPVLYVLEGKRRELQ----QIEHWN 2123
Score = 193 (73.0 bits), Expect = 1.4e-68, Sum P(4) = 1.4e-68
Identities = 48/125 (38%), Positives = 71/125 (56%)
Query: 415 GNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQL 474
G+ TR + Y L+ LLD+L + EMA++ G+ +LSRG +V S +
Sbjct: 1500 GSPCTRWIVMEYYLERVRGTLTLLDQLDLLGRTSEMAKLIGIQFYEVLSRGSQFRVESMM 1559
Query: 475 LRKAKQKNLV--IPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYN 532
LR AK KNLV P+V+ + A ++E ++ FY P+ LDF SLYPS+++AYN
Sbjct: 1560 LRIAKPKNLVPLSPSVQARAHMRAPEYLALIMEPQSRFYADPLIVLDFQSLYPSMIIAYN 1619
Query: 533 LCYST 537
C+ST
Sbjct: 1620 YCFST 1624
Score = 152 (58.6 bits), Expect = 1.4e-68, Sum P(4) = 1.4e-68
Identities = 49/162 (30%), Positives = 74/162 (45%)
Query: 119 IIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANRNSKVPQ 178
+IR+FG G C VHG PY YI P D F + G ++ A K
Sbjct: 47 VIRVFGGNSRGQKTCMHVHGVFPYLYI-------PYDKKDFESLERGILQMAMHLDKAIN 99
Query: 179 F--------VRHIEMVQK-RSIMYYQQQKSQ-PFLKIVVALPTMVASCRGILDRGIQLDG 228
+H+ +Q + I +Y + + FLKI + P V +L G L
Sbjct: 100 ISLGQGSSNAQHVFKIQLVKGIPFYGYHRVEHQFLKIYMFNPRFVRRAANLLQSGAILS- 158
Query: 229 LGMKSFMTYESNVLFALRFMIDCNIVGGNWIEVP--VGKYRK 268
K+F +ES+V + L+FMID N+ G +++ VP V K+R+
Sbjct: 159 ---KNFSPHESHVPYILQFMIDYNLYGMSYVHVPLEVLKFRR 197
Score = 57 (25.1 bits), Expect = 1.4e-68, Sum P(4) = 1.4e-68
Identities = 26/111 (23%), Positives = 44/111 (39%)
Query: 304 ILSFDIECAGRKGHFPEPTHDPVIQVANLV--TLQGEKQP-------FIRNVMTLKSCAP 354
I++ ++ + R P+P HD + + + +L EK P + V L S P
Sbjct: 1302 IITLEVFVSTRGDLQPDPMHDEIRCLFYAIEHSLPDEKLPSKACGYIMVNTVQDLLSEGP 1361
Query: 355 IVGVD----VMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
G+D V +E + A D D+ GY I Y+I++
Sbjct: 1362 FHGIDRDIEVQVVTSEAEAFEALLALCERWDADIYAGYEIEMSSWGYVIDR 1412
Score = 39 (18.8 bits), Expect = 2.6e-20, Sum P(4) = 2.6e-20
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 643 QMIEHTKKLVEDKF 656
Q IEH KL+E F
Sbjct: 2117 QQIEHWNKLLEHHF 2130
Score = 38 (18.4 bits), Expect = 1.0e-56, Sum P(4) = 1.0e-56
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 15 TPKESWPNKQQAT---TPTTPV 33
TP +S +K +++ TPTTP+
Sbjct: 553 TPIKSISSKSKSSPSKTPTTPI 574
>UNIPROTKB|I3L6U8 [details] [associations]
symbol:LOC100737059 "DNA polymerase" species:9823 "Sus
scrofa" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 KO:K02350
GeneTree:ENSGT00550000074640 EMBL:FP102400 RefSeq:XP_003480350.1
Ensembl:ENSSSCT00000026193 GeneID:100737059 KEGG:ssc:100737059
OMA:KATISQY Uniprot:I3L6U8
Length = 721
Score = 689 (247.6 bits), Expect = 8.4e-68, P = 8.4e-68
Identities = 190/599 (31%), Positives = 292/599 (48%)
Query: 436 RLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNL--VIPNVKQAGS 493
++L++L I EMAR+ G+ +L+RG +V S +LR AK N V P+V+Q
Sbjct: 122 QMLEQLDLIGKTSEMARLFGIQFLHVLTRGSQYRVESMMLRIAKPMNYIPVTPSVQQRSQ 181
Query: 494 EQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYST-LVTPEDARK------ 546
+ ++E + FY + LDF SLYPSI++AYN C+ST L E+ K
Sbjct: 182 MRAPQCVPLIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFSTCLGHVENLGKHDEFKF 241
Query: 547 ----LNLPPEC-------VNKTPSGETFVKSNLQKGXXXXXXXXXXXXXXXXXXXXXXXX 595
L +PP+ + +P+G FVK +++KG
Sbjct: 242 GCTSLRVPPDLLYQIRHDITVSPNGIAFVKPSVRKGVLPRMLEEILKTRLMVKQSMKAYK 301
Query: 596 XPLEKA-VLDGRQLALKISANSVYGFTGATV-GQLPCIEISSSVTSYGRQMIEHTKKLVE 653
+ +L+ RQL LK+ AN +G+T A G++PCIE+ S+ R+ +E KLV
Sbjct: 302 QDRALSRMLEARQLGLKLIANVTFGYTAANFSGRMPCIEVGDSIVHKARETLERAIKLVN 361
Query: 654 DKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEK 713
D T G A V+YGDTDS+ V T E + K+G+E A+ ++ T KP+KL+FEK
Sbjct: 362 D--TKKWG----ARVVYGDTDSMFVLLKGATKEQSFKIGQEIAEAVTATNPKPVKLKFEK 415
Query: 714 VYYPYLLISKKRYAG-LYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRD 772
VY P +L +KKRY G +Y T +K D KGIETVRRD+C V ++ L + RD
Sbjct: 416 VYLPCVLQTKKRYVGYMYETLDQKDPVFDAKGIETVRRDSCPAVSKILERSLKLLFETRD 475
Query: 773 IPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAA--HVELAERMRKRDAAT 830
I QYV+ LL + + + K + Y+ A +EL +M D +
Sbjct: 476 ISLIKQYVQRQCLKLLEGKASIQDFIFAKEYRGSAS-YKPGACVPALELTRKMLTHDRRS 534
Query: 831 APNVGDRVPYVIIKAAKGAKAYERSEDPIYVLEN-NIPIDTHYYLENQISKPLLRIFEPI 889
P VG+RVPYVII G + P+ V+++ + ++ YY+ QI PL RIF I
Sbjct: 535 EPRVGERVPYVIIYGTPGVPLIQLVRRPVEVMQDPTLRLNATYYITKQILPPLARIFSLI 594
Query: 890 ---LKNASKELLSGDHTRSISISTPSNSGIMKFAKRQLSCIGCKALISNGTLCSHCKGRE 946
+ N EL T S G + L C C L +G +C+ C+ +
Sbjct: 595 GIDVFNWYHEL-PRKATSSSRSEHEGRKGTISQYFTTLHCPVCDDLTQHG-ICTKCRSQP 652
Query: 947 AELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEA 1005
+ +++ELE +L C+ C G + + C S +CP+ Y+ + +++++A
Sbjct: 653 QHVAVILNQEIRELERQQEQLVKICRNCTGCFDRHIPCVSLNCPVLYKLSRVNRELSKA 711
>SGD|S000006088 [details] [associations]
symbol:REV3 "Catalytic subunit of DNA polymerase zeta"
species:4932 "Saccharomyces cerevisiae" [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IDA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016035 "zeta DNA
polymerase complex" evidence=IDA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IPI] [GO:0070987 "error-free translesion synthesis"
evidence=IDA] [GO:0042276 "error-prone translesion synthesis"
evidence=IGI;IDA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 SGD:S000006088
GO:GO:0005739 GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 GO:GO:0051539 EMBL:BK006949
SUPFAM:SSF53098 EMBL:X96770 GO:GO:0003887 GO:GO:0070987
GO:GO:0042276 eggNOG:COG0417 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 KO:K02350 GO:GO:0016035
GeneTree:ENSGT00550000074640 HOGENOM:HOG000194392 OrthoDB:EOG4FN7RT
EMBL:M29683 EMBL:Z73523 PIR:A33602 RefSeq:NP_015158.1
ProteinModelPortal:P14284 SMR:P14284 IntAct:P14284
MINT:MINT-2731570 STRING:P14284 PRIDE:P14284 EnsemblFungi:YPL167C
GeneID:855936 KEGG:sce:YPL167C CYGD:YPL167c OMA:DRWGYTH
NextBio:980687 Genevestigator:P14284 GermOnline:YPL167C
Uniprot:P14284
Length = 1504
Score = 600 (216.3 bits), Expect = 2.5e-67, Sum P(3) = 2.5e-67
Identities = 172/615 (27%), Positives = 286/615 (46%)
Query: 426 YCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVI 485
Y L A + +LL K +I +E AR+ G+ + RG KV S L+R K ++ ++
Sbjct: 880 YWLSRAQINIQLLRKQDYIARNIEQARLIGIDFHSVYYRGSQFKVESFLIRICKSESFIL 939
Query: 486 --PNVKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLV---- 539
P K ++ V+E + FY+ P+ LDF SLYPSIM+ YN CYST++
Sbjct: 940 LSPGKKDVRKQKALECVPLVMEPESAFYKSPLIVLDFQSLYPSIMIGYNYCYSTMIGRVR 999
Query: 540 ----TPED--ARKLNLPPEC-------VNKTPSGETFVKSNLQKGXXXXXXXXXXXXXXX 586
T + K +LP V P+G + K++++K
Sbjct: 1000 EINLTENNLGVSKFSLPRNILALLKNDVTIAPNGVVYAKTSVRKSTLSKMLTDILDVRVM 1059
Query: 587 XXXXXXXXXXPLE--KAVLDGRQLALKISANSVYGFTGATV-GQLPCIEISSSVTSYGRQ 643
K +L+ +QLALK+ AN YG+T A+ G++PC +++ S+ GR+
Sbjct: 1060 IKKTMNEIGDDNTTLKRLLNNKQLALKLLANVTYGYTSASFSGRMPCSDLADSIVQTGRE 1119
Query: 644 MIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTF 703
+E ++E T NA+V+YGDTDS+ V T A +G A+ ++
Sbjct: 1120 TLEKAIDIIEKDETW------NAKVVYGDTDSLFVYLPGKTAIEAFSIGHAMAERVTQNN 1173
Query: 704 IKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEK-FDKMDTKGIETVRRDNCLLVKNLVTE 762
KPI L+FEKVY+P +LISKKRY G + +P + D KGIETVRRD + ++ +
Sbjct: 1174 PKPIFLKFEKVYHPSILISKKRYVGFSYESPSQTLPIFDAKGIETVRRDGIPAQQKIIEK 1233
Query: 763 CLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKA-AHVELAE 821
C+ + +D+ +Y+++ + + ++ K + E A A + +
Sbjct: 1234 CIRLLFQTKDLSKIKKYLQNEFFKIQIGKVSAQDFCFAKEVKLGAYKSEKTAPAGAVVVK 1293
Query: 822 RMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLEN-NIPIDTHYYLENQISK 880
R D P +R+PY+++K +G ER P LE N+ +D+ YY+ +
Sbjct: 1294 RRINEDHRAEPQYKERIPYLVVKGKQGQLLRERCVSPEEFLEGENLELDSEYYINKILIP 1353
Query: 881 PLLRIFEPI---LKNASKELLSGDHTRSISISTPSNSGIMKFAKRQLSCIGC-KAL--IS 934
PL R+F I + N ++E++ ++ S +T I + +C C + L I
Sbjct: 1354 PLDRLFNLIGINVGNWAQEIVK---SKRASTTTTKVENITRVGT-SATCCNCGEELTKIC 1409
Query: 935 NGTLCSHCKGREAELYCKTVSQVQELEVLFGRLWTQCQECQ------GSLHQDVL---CT 985
+ LC C + + + + + + + L T C+ C + D + C
Sbjct: 1410 SLQLCDDCLEKRSTTTLSFLIKKLKRQKEYQTLKTVCRTCSYRYTSDAGIENDHIASKCN 1469
Query: 986 SRDCPIFYRRKKAQK 1000
S DCP+FY R KA++
Sbjct: 1470 SYDCPVFYSRVKAER 1484
Score = 123 (48.4 bits), Expect = 2.5e-67, Sum P(3) = 2.5e-67
Identities = 47/172 (27%), Positives = 75/172 (43%)
Query: 105 SNRELLPLSSGSAAI-IRIFGVTREGHSVCCKVHGFEPYFYISCP-QGMGPDDISH---- 158
S+ E LPL+ S IR+FG GH V C VHG PY +I Q + H
Sbjct: 43 SHGESLPLNQFSQVPNIRVFGALPTGHQVLCHVHGILPYMFIKYDGQITDTSTLRHQRCA 102
Query: 159 -FHQILEGRMREANRNSKVPQF-VRHIEMVQKRSIMYYQQQKSQPFL------KIVVALP 210
H+ LE ++R + + K + + ++ + K PF + +
Sbjct: 103 QVHKTLEVKIRASFKRKKDDKHDLAGDKLGNLNFVADVSVVKGIPFYGYHVGWNLFYKIS 162
Query: 211 TMVASCRGILDRGIQLDG-LGMKSFMTYESNVLFALRFMIDCNIVGGNWIEV 261
+ SC + I+ DG + K F YES++ + L++ D N+ G +WI V
Sbjct: 163 LLNPSCLSRISELIR-DGKIFGKKFEIYESHIPYLLQWTADFNLFGCSWINV 213
Score = 91 (37.1 bits), Expect = 2.5e-67, Sum P(3) = 2.5e-67
Identities = 19/69 (27%), Positives = 39/69 (56%)
Query: 358 VDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK-EDVHH-SIISDLQNG 415
+ VM +E+E ++ A D + +DPD++ G+ I F Y+IE+ + +H I+ +L
Sbjct: 737 IPVMFYESEFEMFEALTDLVLLLDPDILSGFEIHNFSWGYIIERCQKIHQFDIVRELARV 796
Query: 416 NAETRRRLA 424
+ + +L+
Sbjct: 797 KCQIKTKLS 805
Score = 56 (24.8 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 337 GEKQPFIRNVMTLKSCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNIC 391
G+K +R L+ C P+V +F ++L DF + + P +MIGYN C
Sbjct: 943 GKKD--VRKQKALE-CVPLVMEPESAFYKSPLIVL---DF-QSLYPSIMIGYNYC 990
Score = 48 (22.0 bits), Expect = 1.8e-59, Sum P(3) = 1.8e-59
Identities = 17/60 (28%), Positives = 32/60 (53%)
Query: 176 VPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDR-GIQLDGLGMKSF 234
+PQF+++ E +Q R I + +K I V P V+S R +++ +Q + L +K +
Sbjct: 271 LPQFIKNREKLQHRDIHHDFLEKLGDISDIPVK-P-YVSSARDMINELTMQREELSLKEY 328
>UNIPROTKB|G4NL37 [details] [associations]
symbol:MGG_02986 "DNA polymerase" species:242507
"Magnaporthe oryzae 70-15" [GO:0009405 "pathogenesis" evidence=IMP]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0009405
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
EMBL:CM001237 GO:GO:0003887 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 KO:K02350 RefSeq:XP_003720713.1
EnsemblFungi:MGG_02986T0 GeneID:2682539 KEGG:mgr:MGG_02986
Uniprot:G4NL37
Length = 1782
Score = 520 (188.1 bits), Expect = 2.6e-62, Sum P(5) = 2.6e-62
Identities = 149/479 (31%), Positives = 229/479 (47%)
Query: 437 LLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKN--LVIPNVKQAGSE 494
+L++ I E AR+ GV + SRG KV S + R AK +N LV P+ KQ G +
Sbjct: 1093 ILEENGLISRTSEQARLLGVDFFSVFSRGSQFKVESIMFRIAKPENFMLVSPSRKQVGGQ 1152
Query: 495 QGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLVT-------------P 541
V+E ++ FY P+ LDF SLYPS+M+AYN CYST +
Sbjct: 1153 NALECLPLVMEPQSAFYNSPVLVLDFQSLYPSVMIAYNYCYSTFLGRIVDWRGTNKMGFA 1212
Query: 542 EDARK---LNLPPECVNKTPSGETFVKSNLQKGXXXXXXXXXXXXXXXXXXXXXXXXXPL 598
E R+ L L E +N P+G + K ++K
Sbjct: 1213 EYRRRKRLLELLQEHINIAPNGVMYTKPEIRKSLLAKMLTEILETRVMVKSGMKQDKDDK 1272
Query: 599 E-KAVLDGRQLALKISANSVYGFTGATV-GQLPCIEISSSVTSYGRQMIEHTKKLVEDKF 656
+ +L+ RQLALK+ AN YG+T A+ G+LPC EI+ S+ GR+ +E +
Sbjct: 1273 TLQQLLNNRQLALKLLANVTYGYTSASFSGRLPCSEIADSIVQTGRETLERAIAFIH--- 1329
Query: 657 TTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYY 716
+V + AEV+YGDTDS+ + T E A ++G E A I+ +P+KL+FEKVY
Sbjct: 1330 -SVPRW--GAEVVYGDTDSLFIHLKGRTKEQAFEIGNEMAKAITDMNPRPMKLKFEKVYL 1386
Query: 717 PYLLISKKRYAGLYWTN-PEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPG 775
P +L++KKRY G + + ++ D KGIETVRRD + + + L + D+
Sbjct: 1387 PCVLLAKKRYVGYKYEHVDQQVPDFDAKGIETVRRDGTPAEQKIEEKALRLLFETADLSQ 1446
Query: 776 AVQYVKSTISDLLMNRMDLSLLVITKGLTKTG---DDYEVKAAH--VELAERMRKRDAAT 830
+Y + + ++ ++ + K + K G D V A ++ + D
Sbjct: 1447 IKEYFQRQCNKIMRGQVSIQDFCFAKEV-KLGTYSDRNGVGPAPPGALISTKKMLADPRA 1505
Query: 831 APNVGDRVPYVIIKAAKGAKAYERS---EDPIYVLENNIPIDTHYYLENQISKPLLRIF 886
P G+RV YV++ A GA+ +R ED + ++ +D YY+ + PL RIF
Sbjct: 1506 EPQYGERVLYVVVTGAPGARLADRCVPPEDMLSPAGAHLRLDADYYISKNLIPPLERIF 1564
Score = 152 (58.6 bits), Expect = 2.6e-62, Sum P(5) = 2.6e-62
Identities = 40/158 (25%), Positives = 76/158 (48%)
Query: 119 IIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHF----HQILEGRMREANRNS 174
+IR+FG T+ G VC +HG PY +I + +++ F H ++ + + R
Sbjct: 42 VIRVFGSTQTGQKVCAHIHGAFPYLFIEYNGKLDQEEVGAFSYRLHLSIDHALAVSYRQD 101
Query: 175 K----VPQFVRHIEMVQKRSIMYYQQQKSQPF-LKIVVALPTMVASCRGILDRGIQLDGL 229
P++V I +V + + +Y + LKI + P ++ +L +G+ +
Sbjct: 102 AYARDTPKYVARITLV--KGVPFYGFHVGYKYYLKIYMLNPVVMTRLADLLHQGVIMK-- 157
Query: 230 GMKSFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYR 267
+ F YE+++ + L+FM D N+ G +IE K+R
Sbjct: 158 --RKFQPYEAHLQYILQFMTDYNLYGCGYIEASSVKFR 193
Score = 88 (36.0 bits), Expect = 2.6e-62, Sum P(5) = 2.6e-62
Identities = 23/75 (30%), Positives = 32/75 (42%)
Query: 938 LCSHCKGREAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVL----CTSRDCPIFY 993
+C C E K S++ F + C+ C G DV C S+DCP+FY
Sbjct: 1686 VCGRCTRHAQESLLKLHSRLAHERKRFSEVADVCRSCAGLAPGDVASVHDCDSKDCPVFY 1745
Query: 994 RR-KKAQKDMAEAKL 1007
R K+A K E +
Sbjct: 1746 TRVKQATKLRTEMSI 1760
Score = 65 (27.9 bits), Expect = 2.6e-62, Sum P(5) = 2.6e-62
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 359 DVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
+++ +E D+++ + +R DPD++ GY + YLIE+
Sbjct: 938 ELLEETSELDLMVRMVEIVRTHDPDILTGYEVHGGSWGYLIER 980
Score = 48 (22.0 bits), Expect = 2.9e-09, Sum P(4) = 2.9e-09
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 352 CAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNIC 391
C P+V +F ++L DF + + P VMI YN C
Sbjct: 1157 CLPLVMEPQSAFYNSPVLVL---DF-QSLYPSVMIAYNYC 1192
Score = 43 (20.2 bits), Expect = 8.9e-09, Sum P(4) = 8.9e-09
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 717 PYLL-ISKKRYAGLYWTNPEKF--DKMDTKGIETVRRDNCLL 755
PYL + R A W PE DK K E +RR+ C +
Sbjct: 743 PYLPEFTADRAAPDAWAVPEARLPDKSKLKIEEEIRRNKCTI 784
Score = 41 (19.5 bits), Expect = 2.6e-62, Sum P(5) = 2.6e-62
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 274 SYCQLEFDCLYSDIISR 290
S+C +E D DI++R
Sbjct: 233 SHCPIEVDICVQDILNR 249
>UNIPROTKB|Q75F27 [details] [associations]
symbol:AGOS_AAL099C "DNA polymerase" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0016035 "zeta DNA
polymerase complex" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0006297 "nucleotide-excision repair,
DNA gap filling" evidence=IBA] [GO:0008408 "3'-5' exonuclease
activity" evidence=IBA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098 EMBL:AE016814
GenomeReviews:AE016814_GR GO:GO:0003887 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 KO:K02350 GO:GO:0016035 HOGENOM:HOG000194392
OrthoDB:EOG4FN7RT RefSeq:NP_982443.2 STRING:Q75F27
EnsemblFungi:AAS50267 GeneID:4618518 KEGG:ago:AGOS_AAL099C
Uniprot:Q75F27
Length = 1464
Score = 596 (214.9 bits), Expect = 1.5e-60, Sum P(5) = 1.5e-60
Identities = 180/616 (29%), Positives = 288/616 (46%)
Query: 426 YCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVI 485
YCL+ RLL+ I VE AR+ G+ +LSRG +V S L R AK ++L++
Sbjct: 839 YCLERVRCNIRLLNLKQVISRTVEQARLIGIDFYSVLSRGSQYRVESVLARLAKAEHLML 898
Query: 486 --PNVKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLV--TP 541
P ++ +LE FY P+ LDF SLYPSI++AYN CY+T++ T
Sbjct: 899 ISPGKGDLRHQRALECVPLILEPDPTFYTSPVLVLDFQSLYPSIIIAYNYCYTTILGRTR 958
Query: 542 E---DARKLN-----LPPECV-----NKT--PSGETFVKSNLQKGXXXXXXXXXXXXXXX 586
E K+ L P + N T P+G T+VK N++K
Sbjct: 959 EMTAGENKIGITTNILKPNILQLLGDNITIAPNGVTYVKQNIRKSILAKMLSDILDTRVL 1018
Query: 587 XXXXXXXXXXPLEK--AVLDGRQLALKISANSVYGFTGATV-GQLPCIEISSSVTSYGRQ 643
++ + LD RQLALK+ AN YG+ A+ G++PC +I+ S+ GR+
Sbjct: 1019 LKRTISDMHNGSKRLLSTLDNRQLALKLLANVTYGYASASYSGRMPCSDIADSIVHTGRE 1078
Query: 644 MIEHTKKLVE--DKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISG 701
+ +++E DK+ A V+YGDTDS+ V + E A K+G +D ++
Sbjct: 1079 TLRAAIQMIEKEDKW--------GARVVYGDTDSLFVHLPGKSREQAFKIGAAISDAVTA 1130
Query: 702 TFIKPIKLEFEKVYYPYLLISKKRYAG-LYWTNPEKFDKMDTKGIETVRRDNCLLVKNLV 760
PIKL+FEKVY+P +L+SKKRY G Y ++ + D KGIETVRRD + ++
Sbjct: 1131 ANPNPIKLKFEKVYHPCILLSKKRYVGHAYEHASQEVPRYDAKGIETVRRDGHPAQRKII 1190
Query: 761 TECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAH---V 817
L + +D+ Y+ + ++ + + +K + + G Y+ +AA
Sbjct: 1191 QRSLEILFRTKDLSQLKAYIVNQFWKIMTGSVPIGDFCFSKEV-RLGF-YKSEAAAPPAA 1248
Query: 818 ELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPI-YVLENNIPIDTHYYLEN 876
++A RM + D+ P +RV YV+ K+ G +R P ++ + + +D YY+
Sbjct: 1249 QVARRMMENDSMAEPQYRERVSYVVAKSRPGTLLADRCIAPQDFLADPRLELDAEYYITK 1308
Query: 877 QISKPLLRIFEPI---LKNASKELLSGDHTRSISISTPSNSGIMKFAKRQLSCIGCK--A 931
+ PL R+ + + L + +E+ + + S + + C+ CK A
Sbjct: 1309 TLIPPLNRLLQTVGLDLFDWYREMPRPSSYKHVGSGA---SDTLHHVLKSNRCLCCKREA 1365
Query: 932 LISNGT-LCSHCKGREAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVL------- 983
NG LC C+ +E + + E F R C+ C L +D+L
Sbjct: 1366 TTKNGLQLCDSCRTSPSESSVALLLDRRTRESRFNRALRACRVCCFPLTKDLLAAPEIGP 1425
Query: 984 --CTSRDCPIFYRRKK 997
C + DCP+FY RKK
Sbjct: 1426 NQCQAHDCPVFYTRKK 1441
Score = 80 (33.2 bits), Expect = 1.5e-60, Sum P(5) = 1.5e-60
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 119 IIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISH 158
IIR +G GH++ +HG PY +ISC PD++ +
Sbjct: 71 IIRFYGKLTSGHNILSHLHGALPYLFISCDAP--PDELRY 108
Score = 69 (29.3 bits), Expect = 1.5e-60, Sum P(5) = 1.5e-60
Identities = 12/49 (24%), Positives = 27/49 (55%)
Query: 360 VMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEKEDVHHSI 408
V F +E +++ + + +DPD++ GY K Y++ + ++ H+I
Sbjct: 698 VAFFTSEYELITEFAKLVLIIDPDILSGYETNKSSWGYILARAELSHNI 746
Score = 43 (20.2 bits), Expect = 1.5e-60, Sum P(5) = 1.5e-60
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 13 PPT---PKES--WPNKQQATTP 29
PPT PK S WP K +T P
Sbjct: 49 PPTSLDPKHSLSWPGKAFSTVP 70
Score = 41 (19.5 bits), Expect = 1.5e-60, Sum P(5) = 1.5e-60
Identities = 20/84 (23%), Positives = 37/84 (44%)
Query: 173 NSKVPQFVRHIEMVQKRSIMYYQQQKS-QPFLKIVVALPTMVASCRGILDRGIQLDGLGM 231
N + ++V ++ +V + + +Y F KI + P V L G LG
Sbjct: 147 NIECLRYVANVSVV--KGVPFYGFNVGWSVFYKISLLNPRFVTLLANKLRDG---SILG- 200
Query: 232 KSFMTYESNVLFALRFMIDCNIVG 255
+S YE+++ + L+ D N+ G
Sbjct: 201 RSVSVYEAHIPYLLQTSADFNLYG 224
Score = 39 (18.8 bits), Expect = 3.8e-60, Sum P(5) = 3.8e-60
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 85 VSQCQSIMFQQLDIDYVIGDSNRELLPLSSGSAAIIRI 122
V C S++ Q+ YV+ ++ L S G+ +I+I
Sbjct: 2 VKLC-SLLHQRKQAFYVMSQTSNHNLNSSEGNEDLIQI 38
>DICTYBASE|DDB_G0271608 [details] [associations]
symbol:rev3 "DNA polymerase zeta catalytic subunit"
species:44689 "Dictyostelium discoideum" [GO:0006974 "response to
DNA damage stimulus" evidence=IMP] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA;ISS;IBA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016035 "zeta
DNA polymerase complex" evidence=ISS;IBA] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0005634
"nucleus" evidence=IBA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 dictyBase:DDB_G0271608 GO:GO:0005634
GO:GO:0005694 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GenomeReviews:CM000151_GR EMBL:AAFI02000006 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 KO:K02350
GO:GO:0016035 RefSeq:XP_645553.1 ProteinModelPortal:Q55AZ3
EnsemblProtists:DDB0232271 GeneID:8618010 KEGG:ddi:DDB_G0271608
InParanoid:Q55AZ3 OMA:TTCELEV Uniprot:Q55AZ3
Length = 2701
Score = 412 (150.1 bits), Expect = 1.1e-56, Sum P(7) = 1.1e-56
Identities = 104/305 (34%), Positives = 161/305 (52%)
Query: 602 VLDGRQLALKISANSVYGFTGATV-GQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVG 660
+L+ RQL LK+ AN +G+T AT G++PCIEI S+ R+ +E K+VE
Sbjct: 2227 ILNARQLGLKMMANVAFGYTAATYSGRMPCIEIGDSIVQTARETLEAAIKIVESS----- 2281
Query: 661 GYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLL 720
E NA+V+YGDTDS+ V + E A ++G+ A+ ++ P+KL FEKVY+P +L
Sbjct: 2282 -KEWNAKVVYGDTDSLFVLLPGVSREKAFEIGQNIANKVTSLNPSPVKLLFEKVYHPCIL 2340
Query: 721 ISKKRYAGLYWTNPEKFDKM-DTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQY 779
++KKRY G + +P + + + D KGIETVRRD+C +V ++ + + I +DI Y
Sbjct: 2341 VNKKRYVGYKYESPSQTEPIFDAKGIETVRRDSCKVVSKILEKSIRIIFETKDISLVKSY 2400
Query: 780 VKSTISDLLMNRMDLSLLVITK----GLTKTG------DDYEVKAAHVELAERMRKRDAA 829
V +L +R LS + +K G K DD +A R+ K D
Sbjct: 2401 VIRQWEKILQDRFSLSDFIFSKEVRLGTYKCQQQQNNIDDLNGLPPAALIASRLMKSDPR 2460
Query: 830 TAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENN--IPIDTHYYLENQISKPLLRIFE 887
P G+RV YV++ ++ + P+ LE + + I+ YY+ QI L RIF+
Sbjct: 2461 LEPRYGERVKYVVVYGEPNSRLIDLVLTPMEFLERSDRLRINVIYYITKQILPALDRIFK 2520
Query: 888 PILKN 892
+ N
Sbjct: 2521 VLNVN 2525
Score = 170 (64.9 bits), Expect = 1.1e-56, Sum P(7) = 1.1e-56
Identities = 44/122 (36%), Positives = 61/122 (50%)
Query: 418 ETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQLLRK 477
+ R R Y LK L+ I E +RV G+ + +LSRG V S LLR
Sbjct: 1953 QQRWRTLEYYLKKCENNFNLIYAFDLIQRTSEFSRVYGIDFNSVLSRGSQYTVESMLLRL 2012
Query: 478 AKQKNLVI--PNVKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCY 535
K +N ++ P+ ++ S+ V++ Y P+ LDF SLYPSIM+AYN CY
Sbjct: 2013 TKPENFILLSPSREEVLSQPMPESIPLVMDPITRLYNSPVVVLDFQSLYPSIMIAYNYCY 2072
Query: 536 ST 537
ST
Sbjct: 2073 ST 2074
Score = 79 (32.9 bits), Expect = 1.1e-56, Sum P(7) = 1.1e-56
Identities = 19/66 (28%), Positives = 33/66 (50%)
Query: 933 ISNGTLCSHCKGREAELYCKTVSQVQELEVLFGRLWTQCQEC-QGSLHQDVLCTSRDCPI 991
+S+ +C C E Y VS+ + +E ++ C+ C + + + C S DC I
Sbjct: 2616 LSSYPICKSCGMDEQTSYFTLVSRYKYIENQKNKVNDICRSCIRDQSVETIDCISLDCSI 2675
Query: 992 FYRRKK 997
FY+R+K
Sbjct: 2676 FYQRRK 2681
Score = 73 (30.8 bits), Expect = 1.1e-56, Sum P(7) = 1.1e-56
Identities = 23/97 (23%), Positives = 46/97 (47%)
Query: 171 NRNSKVPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLG 230
N N + Q++ + ++V+ R Y + F+KI + P + +L G+ +
Sbjct: 139 NNNVFLKQYIFNAKLVRGRPFYGYHST-DKIFIKIYLYNPDDINRVANLLRSGMIMS--- 194
Query: 231 MKSFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYR 267
+ F +ES++ F L+ +D N+ G + IE +R
Sbjct: 195 -RCFRVFESHIPFILQVFLDYNLSGMSNIEFTNAYFR 230
Score = 71 (30.1 bits), Expect = 1.1e-56, Sum P(7) = 1.1e-56
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 119 IIRIFGVTREGHSVCCKVHGFEPYFYI 145
I+RIFG T G C +H PYF+I
Sbjct: 57 IVRIFGSTPAGQKCCLHLHQLFPYFFI 83
Score = 71 (30.1 bits), Expect = 1.1e-56, Sum P(7) = 1.1e-56
Identities = 23/111 (20%), Positives = 52/111 (46%)
Query: 304 ILSFDIECAGRKGHFPEPTHDPV------IQVANLVTLQGEKQPFIRNVMTL-----KSC 352
ILS +I C R P P D + I+ + ++G++ I+ ++ + ++
Sbjct: 1718 ILSVEIHCNSRDNLNPNPEFDSIQSIIYCIRDEQSIEIEGDQYQDIKGILMVNDGHYENE 1777
Query: 353 APIVGVD--VMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
G++ + E ++ ++ + IR D D+++G+ + + YLIE+
Sbjct: 1778 NNSYGLNCFIKVLHNEFELFKSFVELIRSYDIDILVGFEVQMSSIGYLIER 1828
Score = 61 (26.5 bits), Expect = 1.9e-42, Sum P(5) = 1.9e-42
Identities = 32/134 (23%), Positives = 56/134 (41%)
Query: 265 KYRKTAKTLSY----CQLEFDCLYS-DIISRHPEGEFSKMAPFRILSFDIECAGRKG--H 317
+Y++ +TL Y C+ F+ +Y+ D+I R EFS R+ D +G +
Sbjct: 1951 QYQQRWRTLEYYLKKCENNFNLIYAFDLIQR--TSEFS-----RVYGIDFNSVLSRGSQY 2003
Query: 318 FPEPTHDPVIQVANLVTLQGEKQPFIRNVMTLKSCAPIVGVDVMSFETERDVLLAWRDFI 377
E + + N + L ++ + M P+V + V+L DF
Sbjct: 2004 TVESMLLRLTKPENFILLSPSREEVLSQPMP--ESIPLVMDPITRLYNSPVVVL---DF- 2057
Query: 378 REVDPDVMIGYNIC 391
+ + P +MI YN C
Sbjct: 2058 QSLYPSIMIAYNYC 2071
Score = 45 (20.9 bits), Expect = 1.1e-56, Sum P(7) = 1.1e-56
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 257 NWIEVPVGKYRKTAKTLSYCQLEFDCLYSDI 287
N I++ V K RKT C+LE D + DI
Sbjct: 290 NNIKISVVKNRKTT-----CELEVDAIIYDI 315
Score = 39 (18.8 bits), Expect = 6.5e-53, Sum P(6) = 6.5e-53
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 181 RHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLD 227
+ I+ ++K S QQQ+ Q LKI P + + + D I +D
Sbjct: 1209 KKIQPLKKPSQQPIQQQQQQQTLKIEA--PYVSPNKKSAEDGNINVD 1253
Score = 38 (18.4 bits), Expect = 4.9e-50, Sum P(5) = 4.9e-50
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 12 PPPTPKESWPNKQQATTPTTPV 33
PPP S ++QQ TT V
Sbjct: 1373 PPPIFNYSQQHQQQTTTTKNKV 1394
>UNIPROTKB|F1RZP3 [details] [associations]
symbol:F1RZP3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006260 "DNA replication" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR006134 InterPro:IPR017964 Pfam:PF00136
PROSITE:PS00116 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0003887 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 GeneTree:ENSGT00550000074640
EMBL:CU915528 Ensembl:ENSSSCT00000004881 Uniprot:F1RZP3
Length = 440
Score = 540 (195.1 bits), Expect = 3.2e-51, P = 3.2e-51
Identities = 137/412 (33%), Positives = 209/412 (50%)
Query: 602 VLDGRQLALKISANSVYGFTGATV-GQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVG 660
+L+ RQL LK+ AN +G+T A G++PCIE+ S+ R+ +E KLV D T
Sbjct: 28 MLEARQLGLKLIANVTFGYTAANFSGRMPCIEVGDSIVHKARETLERAIKLVND--TKKW 85
Query: 661 GYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLL 720
G A V+YGDTDS+ V T E + K+G+E A+ ++ T KP+KL+FEKVY P +L
Sbjct: 86 G----ARVVYGDTDSMFVLLKGATKEQSFKIGQEIAEAVTATNPKPVKLKFEKVYLPCVL 141
Query: 721 ISKKRYAG-LYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQY 779
+KKRY G +Y T +K D KGIETVRRD+C V ++ L + RDI QY
Sbjct: 142 QTKKRYVGYMYETLDQKDPVFDAKGIETVRRDSCPAVSKILERSLKLLFETRDISLIKQY 201
Query: 780 VKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAA--HVELAERMRKRDAATAPNVGDR 837
V+ LL + + + K + Y+ A +EL +M D + P VG+R
Sbjct: 202 VQRQCLKLLEGKASIQDFIFAKEYRGSAS-YKPGACVPALELTRKMLTHDRRSEPRVGER 260
Query: 838 VPYVIIKAAKGAKAYERSEDPIYVLEN-NIPIDTHYYLENQISKPLLRIFEPI---LKNA 893
VPYVII G + P+ V+++ + ++ YY+ QI PL RIF I + N
Sbjct: 261 VPYVIIYGTPGVPLIQLVRRPVEVMQDPTLRLNATYYITKQILPPLARIFSLIGIDVFNW 320
Query: 894 SKELLSGDHTRSISISTPSNSGIMKFAKRQLSCIGCKALISNGTLCSHCKGREAELYCKT 953
EL T S G + L C C L +G +C+ C+ + +
Sbjct: 321 YHEL-PRKATSSSRSEHEGRKGTISQYFTTLHCPVCDDLTQHG-ICTKCRSQPQHVAVIL 378
Query: 954 VSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEA 1005
+++ELE +L C+ C G + + C S +CP+ Y+ + +++++A
Sbjct: 379 NQEIRELERQQEQLVKICRNCTGCFDRHIPCVSLNCPVLYKLSRVNRELSKA 430
>UNIPROTKB|A8IZI8 [details] [associations]
symbol:POLZ1 "DNA polymerase" species:3055 "Chlamydomonas
reinhardtii" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005694
"chromosome" evidence=IBA] [GO:0016035 "zeta DNA polymerase
complex" evidence=IBA] [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887
eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 KO:K02350 GO:GO:0016035
EMBL:DS496129 RefSeq:XP_001694423.1 STRING:A8IZI8
EnsemblPlants:EDP02418 GeneID:5720008 KEGG:cre:CHLREDRAFT_117843
ProtClustDB:CLSN2703070 BioCyc:CHLAMY:CHLREDRAFT_117843-MONOMER
Uniprot:A8IZI8
Length = 729
Score = 392 (143.0 bits), Expect = 4.1e-49, Sum P(3) = 4.1e-49
Identities = 112/393 (28%), Positives = 182/393 (46%)
Query: 602 VLDGRQLALKISANSVYGFTGATV-GQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVG 660
VL+ RQ LK+ AN YG+T A G++P E++ ++ GRQ +E+ +VE
Sbjct: 339 VLNARQFGLKMIANVSYGYTAAGFSGRMPFAELADAIVQSGRQTLENAIAMVESH----- 393
Query: 661 GYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLL 720
E A V+YGDTDS+ V + + A ++G E A ++ P+ L+ EKVY+P LL
Sbjct: 394 -PEWRARVVYGDTDSMFVLLQGRSRKEAFRIGAEIARAVTAANPSPVTLKMEKVYHPCLL 452
Query: 721 ISKKRYAGLYWTNPEKFDK-MDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQY 779
+KKRY G + +P + D KGIETVRRD+C V L+ + + + +D+ G Y
Sbjct: 453 QTKKRYVGFSYESPTQASPTFDAKGIETVRRDSCPAVAKLLEQSIRLLFGSKDLSGVKSY 512
Query: 780 VKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHV----ELAERMRKRDAATAPNVG 835
++ + +L NR+ + + K + + G Y AA + E+A R D P
Sbjct: 513 LQRQWTKILSNRVSVQDFIFAKEV-RLGT-YSANAATMPPAAEVAARAMAADPRAEPKYA 570
Query: 836 DRVPYVIIKAAKGAKAYERSEDPIYVLE--NNIPIDTHYYLENQISKPLLRIFEPILKNA 893
+RVPYV++ A GA+ + + P ++E ++ ++ YY+ QI L R+ + +
Sbjct: 571 ERVPYVVVHAEPGARLVDSAVSPWALVEAGGSLRLNGTYYITKQIIPALERVLSLVGADV 630
Query: 894 S---------KELLSGDHTRSISISTPSNSGIMKFAKRQLSCIGCKALISNGT-LCSHCK 943
+ +L + + I +F + C+ C L LC CK
Sbjct: 631 RAWFAEMPRPQRMLPQKRPAGMLAGAAAGGTIDRFYLSR-HCVVCDQLTRAAQPLCDVCK 689
Query: 944 GREAELYCKTVSQVQELEVLFGRLWTQCQECQG 976
+QV LE + C C G
Sbjct: 690 RDPQASLALLAAQVARLERQHTHMVRMCLHCGG 722
Score = 185 (70.2 bits), Expect = 4.1e-49, Sum P(3) = 4.1e-49
Identities = 48/133 (36%), Positives = 67/133 (50%)
Query: 421 RRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQ 480
R L+ C + L + ++L + EMAR G+ +LSRG +V S L+R A
Sbjct: 135 RTLSWLCRR-CRLQLAMAEQLDLVGRTAEMARTFGIDFFSVLSRGSQYRVESLLVRLAHT 193
Query: 481 KNLVIPNV--KQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTL 538
N ++P +Q G + V+E + Y P+ LDF SLYPS ++AYNLCYST
Sbjct: 194 NNYIMPTPSREQVGGQPAMEALPLVMEPESRMYASPVVVLDFQSLYPSQVIAYNLCYSTC 253
Query: 539 V-TPEDARKLNLP 550
V P AR P
Sbjct: 254 VGRPMHARAGGTP 266
Score = 60 (26.2 bits), Expect = 4.1e-49, Sum P(3) = 4.1e-49
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 366 ERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
E +L A+ + +DPDV+ G+++ + L YL E+
Sbjct: 2 EPSLLRAFAAALSSLDPDVVCGWDVQRHSLGYLAER 37
>WB|WBGene00021344 [details] [associations]
symbol:Y37B11A.2 species:6239 "Caenorhabditis elegans"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005634
GO:GO:0005694 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
SUPFAM:SSF53098 GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 KO:K02350 GO:GO:0016035
GeneTree:ENSGT00550000074640 EMBL:FO080137 RefSeq:NP_498248.2
ProteinModelPortal:Q9BKQ3 SMR:Q9BKQ3 EnsemblMetazoa:Y37B11A.2
GeneID:175809 KEGG:cel:CELE_Y37B11A.2 UCSC:Y37B11A.2 CTD:175809
WormBase:Y37B11A.2 InParanoid:Q9BKQ3 OMA:QERCMSE NextBio:889762
Uniprot:Q9BKQ3
Length = 1133
Score = 372 (136.0 bits), Expect = 1.7e-44, Sum P(4) = 1.7e-44
Identities = 113/354 (31%), Positives = 173/354 (48%)
Query: 542 EDARKLNLPPECVNKTPSGETFVKSNLQKGXXXXXXXXXXXXXXXXXXXXXXXXXPLEKA 601
+D KL E V +P FVK + ++G K
Sbjct: 689 DDIVKLVAYKE-VCASPLASMFVKKSKREGVMPLLLREILAARIMVKSAMKRTKNKKLKR 747
Query: 602 VLDGRQLALKISANSVYGFTGAT-VGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVG 660
+LD RQLALK+ AN YG+T A G++PC E++ ++ GR+ +E + ++V+ G
Sbjct: 748 ILDARQLALKLVANVSYGYTAANWSGRMPCAELADAILGKGRETLERSIEMVQR-----G 802
Query: 661 GYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLL 720
Y AEVIYGDTDS+ V +VE A ++GR D ++ + P+ L+ EKVY +L
Sbjct: 803 DYG-GAEVIYGDTDSMFVLVRGASVEEAFEIGRRIVDDVTNSNPDPVVLKLEKVYKGCVL 861
Query: 721 ISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQYV 780
+KKRYAG + + +D KGIETVRRD C +V ++ + L ++ ++ + Y+
Sbjct: 862 ETKKRYAGWMYEHENDEGSLDAKGIETVRRDTCPIVAEVLEKSLG-LIFSQNWKTFITYL 920
Query: 781 KSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAA--HVELAE-RMRKRDAATAPNVGDR 837
+ + +L + S V K + DY +A ++AE R+RK + G+R
Sbjct: 921 NTVVLNLPQE--NFSKFVFCK---EYRGDYSARAMVPQKKIAEARIRKCPSHITLR-GER 974
Query: 838 VPYVIIKAAKGAKAYE--RSEDPIYVLENNIPIDTHYYLENQISKPLLRIFEPI 889
VPYVII G+ Y RS D + I+T YYL I L R+ + I
Sbjct: 975 VPYVIIDGVTGSTVYSCVRSIDQ-FARNPEYKINTFYYLNAHILAALRRVTDLI 1027
Score = 185 (70.2 bits), Expect = 1.7e-44, Sum P(4) = 1.7e-44
Identities = 44/135 (32%), Positives = 75/135 (55%)
Query: 407 SIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPISFLLSRGQ 466
+++ ++ + R + ++ LK + L LL ++ + EMARV G+ + +RG
Sbjct: 524 ALMRRIKGERSAIRNDVHLHLLKLSSLNISLLTEMNWFLKNAEMARVYGIQFHEVWTRGS 583
Query: 467 SIKVLSQLLRKAKQKNLVIPNVKQAGSEQ-GTYEGAT-VLEARAGFYEKPIATLDFASLY 524
++V S LLR A + N V P++ G+ E +LE ++ Y P+ LDF SLY
Sbjct: 584 QLRVESMLLRLAHRMNFVAPSITHLQRNMMGSPEQLQLILEPQSKVYFDPVIVLDFQSLY 643
Query: 525 PSIMMAYNLCYSTLV 539
PS+++AYN CYST++
Sbjct: 644 PSMVIAYNYCYSTIL 658
Score = 56 (24.8 bits), Expect = 1.7e-44, Sum P(4) = 1.7e-44
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 360 VMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEKEDVHHSIIS 410
V+ ETE ++L +I + D DVMIGY + + + + S IS
Sbjct: 407 VVHMETELEMLEEVAKWIVQYDVDVMIGYETIRLSWGFFFRRIKLLGSRIS 457
Score = 39 (18.8 bits), Expect = 1.7e-44, Sum P(4) = 1.7e-44
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 260 EVPVGKYRKTAKTLSYCQLEFDCLYSDIISRHPEGE 295
E+ + Y K KT C +E D L +DI++ + +
Sbjct: 36 ELLLSPYEK--KTT--CHVECDALVTDILNMEMQAD 67
>UNIPROTKB|Q9BKQ3 [details] [associations]
symbol:Y37B11A.2 "DNA polymerase" species:6239
"Caenorhabditis elegans" [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0016035 "zeta DNA polymerase complex"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0005694 "chromosome" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0005634 GO:GO:0005694
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10
InterPro:IPR023211 KO:K02350 GO:GO:0016035
GeneTree:ENSGT00550000074640 EMBL:FO080137 RefSeq:NP_498248.2
ProteinModelPortal:Q9BKQ3 SMR:Q9BKQ3 EnsemblMetazoa:Y37B11A.2
GeneID:175809 KEGG:cel:CELE_Y37B11A.2 UCSC:Y37B11A.2 CTD:175809
WormBase:Y37B11A.2 InParanoid:Q9BKQ3 OMA:QERCMSE NextBio:889762
Uniprot:Q9BKQ3
Length = 1133
Score = 372 (136.0 bits), Expect = 1.7e-44, Sum P(4) = 1.7e-44
Identities = 113/354 (31%), Positives = 173/354 (48%)
Query: 542 EDARKLNLPPECVNKTPSGETFVKSNLQKGXXXXXXXXXXXXXXXXXXXXXXXXXPLEKA 601
+D KL E V +P FVK + ++G K
Sbjct: 689 DDIVKLVAYKE-VCASPLASMFVKKSKREGVMPLLLREILAARIMVKSAMKRTKNKKLKR 747
Query: 602 VLDGRQLALKISANSVYGFTGAT-VGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVG 660
+LD RQLALK+ AN YG+T A G++PC E++ ++ GR+ +E + ++V+ G
Sbjct: 748 ILDARQLALKLVANVSYGYTAANWSGRMPCAELADAILGKGRETLERSIEMVQR-----G 802
Query: 661 GYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLL 720
Y AEVIYGDTDS+ V +VE A ++GR D ++ + P+ L+ EKVY +L
Sbjct: 803 DYG-GAEVIYGDTDSMFVLVRGASVEEAFEIGRRIVDDVTNSNPDPVVLKLEKVYKGCVL 861
Query: 721 ISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQYV 780
+KKRYAG + + +D KGIETVRRD C +V ++ + L ++ ++ + Y+
Sbjct: 862 ETKKRYAGWMYEHENDEGSLDAKGIETVRRDTCPIVAEVLEKSLG-LIFSQNWKTFITYL 920
Query: 781 KSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAA--HVELAE-RMRKRDAATAPNVGDR 837
+ + +L + S V K + DY +A ++AE R+RK + G+R
Sbjct: 921 NTVVLNLPQE--NFSKFVFCK---EYRGDYSARAMVPQKKIAEARIRKCPSHITLR-GER 974
Query: 838 VPYVIIKAAKGAKAYE--RSEDPIYVLENNIPIDTHYYLENQISKPLLRIFEPI 889
VPYVII G+ Y RS D + I+T YYL I L R+ + I
Sbjct: 975 VPYVIIDGVTGSTVYSCVRSIDQ-FARNPEYKINTFYYLNAHILAALRRVTDLI 1027
Score = 185 (70.2 bits), Expect = 1.7e-44, Sum P(4) = 1.7e-44
Identities = 44/135 (32%), Positives = 75/135 (55%)
Query: 407 SIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPISFLLSRGQ 466
+++ ++ + R + ++ LK + L LL ++ + EMARV G+ + +RG
Sbjct: 524 ALMRRIKGERSAIRNDVHLHLLKLSSLNISLLTEMNWFLKNAEMARVYGIQFHEVWTRGS 583
Query: 467 SIKVLSQLLRKAKQKNLVIPNVKQAGSEQ-GTYEGAT-VLEARAGFYEKPIATLDFASLY 524
++V S LLR A + N V P++ G+ E +LE ++ Y P+ LDF SLY
Sbjct: 584 QLRVESMLLRLAHRMNFVAPSITHLQRNMMGSPEQLQLILEPQSKVYFDPVIVLDFQSLY 643
Query: 525 PSIMMAYNLCYSTLV 539
PS+++AYN CYST++
Sbjct: 644 PSMVIAYNYCYSTIL 658
Score = 56 (24.8 bits), Expect = 1.7e-44, Sum P(4) = 1.7e-44
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 360 VMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEKEDVHHSIIS 410
V+ ETE ++L +I + D DVMIGY + + + + S IS
Sbjct: 407 VVHMETELEMLEEVAKWIVQYDVDVMIGYETIRLSWGFFFRRIKLLGSRIS 457
Score = 39 (18.8 bits), Expect = 1.7e-44, Sum P(4) = 1.7e-44
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 260 EVPVGKYRKTAKTLSYCQLEFDCLYSDIISRHPEGE 295
E+ + Y K KT C +E D L +DI++ + +
Sbjct: 36 ELLLSPYEK--KTT--CHVECDALVTDILNMEMQAD 67
>UNIPROTKB|Q233J3 [details] [associations]
symbol:TTHERM_00391570 "DNA polymerase" species:312017
"Tetrahymena thermophila SB210" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0016035
"zeta DNA polymerase complex" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA]
InterPro:IPR001440 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR011990 InterPro:IPR012337
InterPro:IPR013026 InterPro:IPR017964 InterPro:IPR019734
Pfam:PF00136 Pfam:PF00515 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 PROSITE:PS50005 PROSITE:PS50293 SMART:SM00028
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 Gene3D:1.25.40.10 InterPro:IPR006597
SMART:SM00671 SUPFAM:SSF53098 InterPro:IPR013105 Pfam:PF07719
GO:GO:0003887 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 KO:K02350 GO:GO:0016035
EMBL:GG662770 RefSeq:XP_001011832.1 ProteinModelPortal:Q233J3
EnsemblProtists:EAR91587 GeneID:7847176 KEGG:tet:TTHERM_00391570
ProtClustDB:CLSZ2498360 Uniprot:Q233J3
Length = 2315
Score = 364 (133.2 bits), Expect = 1.3e-41, Sum P(4) = 1.3e-41
Identities = 86/286 (30%), Positives = 149/286 (52%)
Query: 603 LDGRQLALKISANSVYGFTGATV-GQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGG 661
L RQ +LK+ ++G+TGAT G++P +++ S+ G+ ++ L+ +
Sbjct: 1335 LQQRQKSLKLFMCVIFGYTGATFSGRMPLGDLADSIIQIGKFLLNQAINLINNS------ 1388
Query: 662 YEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLLI 721
+ A+VIYGDTDSV V +V A+K+G+E +S F P+KL++EK Y +++
Sbjct: 1389 KKWGAQVIYGDTDSVFVNIKGVSVNDAIKIGKEIESEVSKMFPYPLKLKYEKTYQNLVIL 1448
Query: 722 SKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQYVK 781
+KKRYAG + N K + KG+E +R+D C + ++ CL +L ++++ Y+
Sbjct: 1449 TKKRYAGFFVENETDEPKFEAKGLEVMRKDGCQALSIIMKNCLETLLKNKNLSAIKLYLN 1508
Query: 782 STISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYV 841
LL ++ L+I+K ++Y + H +A + KRD T P G R+ Y
Sbjct: 1509 GEWQKLLNDQFSYRDLIISKECKL--ENYTMPPPHARIALKEMKRDPQTKPKYGQRIKYF 1566
Query: 842 IIKAAKGAKAYERSEDPIYVLEN-NIPIDTHYYLENQISKPLLRIF 886
II + + Y+ ++N I+ + YLE QI+ L R+F
Sbjct: 1567 IINNPQSQRLYDCVVSVNEFMKNYRHQINLNEYLEKQINSALGRLF 1612
Score = 129 (50.5 bits), Expect = 1.3e-41, Sum P(4) = 1.3e-41
Identities = 69/273 (25%), Positives = 117/273 (42%)
Query: 277 QLEFDCLYSDIISRHPEGEFSKMAPFRILSFDIECA----GRKGHFPEPTHDPVIQVANL 332
QL D + DI+SR P+ F+ + F++ IE KG+ + Q L
Sbjct: 976 QLGIDVM--DILSRCPKNSFNILRAFKLADCLIEEQFQNDSAKGYSQQSMSFDSNQSFKL 1033
Query: 333 --VTLQGEKQPFIRNVMTLKSCAPIVGVDVMSFETE-RDVLLAWRDFIREVDPDVMIGYN 389
V +Q KQ + K ++FE R ++ WR ++ D + Y
Sbjct: 1034 QNVAMQSIKQSH----RSAKQTGFFANFK-LNFEIAGRMIINTWR-LVKH-DYKLFC-YE 1085
Query: 390 ICKFDLPYLIEKEDVHHSIISDLQNGNAET-RRRLAV--YCLKDAYLPQRLLDKLMFIFN 446
+ + + Y+ ++ S S Q N E ++R+ V Y +K + ++D + I
Sbjct: 1086 L-ESVVNYVFQERIPIFSNWSLTQMYNHEDIKQRVFVFEYMMKRLMKTKDIIDHIQIINT 1144
Query: 447 YVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSE-QGTYEGATV-L 504
E ++ G + +G ++ + R + + + G + Q E + + L
Sbjct: 1145 CAEETKLYGFDFQSAICKGHQFRIEHIMNRVTDLLGYKLMSASRYGVQTQRMLECSPLTL 1204
Query: 505 EARAGFYEKPIATLDFASLYPSIMMAYNLCYST 537
E FY P+ LDF SLYPSIM+AYNLC+ST
Sbjct: 1205 EPPKLFYVDPVIVLDFISLYPSIMIAYNLCFST 1237
Score = 109 (43.4 bits), Expect = 1.3e-41, Sum P(4) = 1.3e-41
Identities = 39/166 (23%), Positives = 75/166 (45%)
Query: 106 NRELLPLSSGSAAIIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPD---DISH--FH 160
NR++L A + R++G ++G+SVC +HG ++ D D+ ++
Sbjct: 82 NRKIL-----QAPVARMYGNDKQGNSVCLHIHGVNQISHLIQNDKTFLDKFIDLIEECYY 136
Query: 161 QILEGRMREANRNSKVPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGIL 220
+ ++ + + E++ K+ I Y + +PFLKI P M+ GIL
Sbjct: 137 TLYSVSEKQKKFLMSTTPIILNYEIIYKKDIYGYHSTE-EPFLKIYFYNPKMIKKLVGIL 195
Query: 221 DRGIQLDGLGMKSFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKY 266
+ G+ ++ F+ YE ++ L+ D +I G E+ + KY
Sbjct: 196 ESGVVMN----IEFVIYEGHLTHFLKLYSDLDIKGLR--EIKLLKY 235
Score = 40 (19.1 bits), Expect = 1.3e-41, Sum P(4) = 1.3e-41
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 265 KYRKTAKTLSYCQLEFDCLYSDIIS 289
K+ K +S C +E D Y +I++
Sbjct: 264 KFNSMTK-VSTCDVEIDVYYKNILN 287
Score = 37 (18.1 bits), Expect = 3.8e-32, Sum P(4) = 3.8e-32
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 364 ETERDVLLAWRDFIREVDPDVMIGYNICKFDLPY 397
+ E ++LL + I + D++ G++I K L Y
Sbjct: 936 KNEEELLLTFIKQIHIFNVDIITGWDIEKKSLFY 969
>UNIPROTKB|Q59J88 [details] [associations]
symbol:Q59J88 "DNA polymerase" species:8517 "Iguana iguana"
[GO:0000084 "S phase of mitotic cell cycle" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=ISS] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003682 "chromatin binding"
evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005635
"nuclear envelope" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0006269 "DNA replication,
synthesis of RNA primer" evidence=ISS] [GO:0006270 "DNA replication
initiation" evidence=ISS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=ISS] [GO:0006272 "leading
strand elongation" evidence=ISS] [GO:0006273 "lagging strand
elongation" evidence=ISS] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=ISS] [GO:0008283 "cell
proliferation" evidence=ISS] [GO:0016363 "nuclear matrix"
evidence=ISS] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS] [GO:0000785
"chromatin" evidence=ISS] [GO:0003896 "DNA primase activity"
evidence=ISS] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0005635 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
GO:GO:0003677 GO:GO:0008283 GO:GO:0003682 GO:GO:0006270
GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0016363 GO:GO:0000084
GO:GO:0006303 GO:GO:0003887 GO:GO:0006273 GO:GO:0006269
GO:GO:0006272 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
HOVERGEN:HBG080008 EMBL:AB178527 Uniprot:Q59J88
Length = 1441
Score = 346 (126.9 bits), Expect = 4.3e-39, Sum P(4) = 4.3e-39
Identities = 99/296 (33%), Positives = 154/296 (52%)
Query: 604 DGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYE 663
D RQ ALK++ANS+YG G + + +++ VT GR+++ HTK++VE +
Sbjct: 914 DIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTFKGREILMHTKEMVE---------K 964
Query: 664 HNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLLISK 723
N EVIYGDTDS+M+ + +E KLG + ++ + K ++++ + ++ LL+ K
Sbjct: 965 MNLEVIYGDTDSIMINTNITNLEEVFKLGNKIKSEVNKLY-KLLEIDIDGIFKSLLLLKK 1023
Query: 724 KRYAGLYW--TNPEKF-DKMDTKGIETVRRDNCLLVKNLVTECLHKILVD--RD-IPGAV 777
K+YA L T K+ K + KG++ VRRD C L K + +IL D RD I +
Sbjct: 1024 KKYAALVVEPTGDGKYITKQELKGLDIVRRDWCDLAKETGNYIISQILSDQFRDVIVENI 1083
Query: 778 QYVKSTISDLLMN-RMDLSLLVITKGLTKTGDDYEVKAA--HVELAERMRKRDAATAPNV 834
Q I + ++N + + I K LTK DY K + HV +A + ++
Sbjct: 1084 QRRLIQIGENVVNGSVPIKQFEINKALTKDPQDYPDKKSLPHVHVALWINSQEGRKL-KA 1142
Query: 835 GDRVPYVIIKAAKGAKAYERSEDPIYVL-ENNIPIDTHYYLENQISKPLLRIFEPI 889
GD V YVI + A +R+ P + + N+ IDT YYL QI + RI EPI
Sbjct: 1143 GDTVSYVICQDGSNLSASQRAYAPEQLKKQENLAIDTQYYLSQQIHPVVARICEPI 1198
Score = 136 (52.9 bits), Expect = 4.3e-39, Sum P(4) = 4.3e-39
Identities = 24/52 (46%), Positives = 35/52 (67%)
Query: 487 NVKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTL 538
N + G ++ Y G VLE + GFY+K I LDF SLYPSI+ +N+C++T+
Sbjct: 799 NKSKTGRKKAAYSGGLVLEPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTV 850
Score = 81 (33.6 bits), Expect = 4.3e-39, Sum P(4) = 4.3e-39
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 365 TERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEKEDV----HHSIISDLQNGN 416
TER +L + + ++DPDV++G+NI FDL L+++ + H S I L+ N
Sbjct: 586 TERTLLGFFLAKVHKIDPDVIVGHNIYGFDLELLLQRINFCKVPHWSKIGRLRRSN 641
Score = 47 (21.6 bits), Expect = 1.2e-07, Sum P(4) = 1.2e-07
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 943 KGREAELYCKTVSQVQELEVLFG 965
KGRE ++ K + + LEV++G
Sbjct: 950 KGREILMHTKEMVEKMNLEVIYG 972
Score = 45 (20.9 bits), Expect = 4.3e-39, Sum P(4) = 4.3e-39
Identities = 18/84 (21%), Positives = 45/84 (53%)
Query: 411 DLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMA-RVTGVP---ISFLLSRGQ 466
+++N ++ R+ L Y +++ + + + ++M N + +A ++T + +S L G+
Sbjct: 699 EIRNMYSDPRQLL--YMVENTWTDAKYILQIMCDLNVLPLALQITNIAGNVMSRTLMGGR 756
Query: 467 SIKVLSQLLRKAKQKNLVIPNVKQ 490
+ + LL +KN ++P+ KQ
Sbjct: 757 AERNEYLLLHAFYEKNFIVPD-KQ 779
>MGI|MGI:99660 [details] [associations]
symbol:Pola1 "polymerase (DNA directed), alpha 1"
species:10090 "Mus musculus" [GO:0000084 "S phase of mitotic cell
cycle" evidence=ISO] [GO:0000166 "nucleotide binding" evidence=ISO]
[GO:0001882 "nucleoside binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISO;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005635 "nuclear envelope" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=ISO;IDA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] [GO:0006260 "DNA
replication" evidence=ISO;IMP;IDA] [GO:0006269 "DNA replication,
synthesis of RNA primer" evidence=ISO] [GO:0006270 "DNA replication
initiation" evidence=ISO] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=ISO] [GO:0006272 "leading
strand elongation" evidence=ISO] [GO:0006273 "lagging strand
elongation" evidence=ISO] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=ISO;IBA] [GO:0008283 "cell
proliferation" evidence=ISO] [GO:0008408 "3'-5' exonuclease
activity" evidence=IBA] [GO:0016363 "nuclear matrix" evidence=ISO]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0017076 "purine
nucleotide binding" evidence=ISO] [GO:0019103 "pyrimidine
nucleotide binding" evidence=ISO] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IPI] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
MGI:MGI:99660 GO:GO:0005737 GO:GO:0005635 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0008283 GO:GO:0000785 GO:GO:0003682 GO:GO:0051539
GO:GO:0006270 GO:GO:0003690 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0016363 GO:GO:0000084 GO:GO:0008408 GO:GO:0017076
GO:GO:0006303 GO:GO:0003896 GO:GO:0003887 KO:K02320 GO:GO:0006273
GO:GO:0006269 GO:GO:0006272 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891 CTD:5422
HOVERGEN:HBG080008 GO:GO:0019103 EMBL:D13543 EMBL:D17384
IPI:IPI00114051 PIR:S45628 RefSeq:NP_032918.1 UniGene:Mm.1923
ProteinModelPortal:P33609 SMR:P33609 IntAct:P33609 STRING:P33609
PhosphoSite:P33609 PaxDb:P33609 PRIDE:P33609
Ensembl:ENSMUST00000006856 GeneID:18968 KEGG:mmu:18968
InParanoid:P33609 OrthoDB:EOG43XV2M BindingDB:P33609
ChEMBL:CHEMBL2797 NextBio:295308 Bgee:P33609 CleanEx:MM_POLA1
Genevestigator:P33609 GermOnline:ENSMUSG00000006678 Uniprot:P33609
Length = 1465
Score = 333 (122.3 bits), Expect = 2.4e-38, Sum P(4) = 2.4e-38
Identities = 95/296 (32%), Positives = 155/296 (52%)
Query: 604 DGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYE 663
D RQ ALK++ANS+YG G + + +++ VT GR+++ HTK +V+ +
Sbjct: 947 DIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKDMVQ---------K 997
Query: 664 HNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLLISK 723
N EVIYGDTDS+M+ +E KLG + ++ + K ++++ + V+ LL+ K
Sbjct: 998 MNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLY-KLLEIDIDAVFKSLLLLKK 1056
Query: 724 KRYAGLYW--TNPEKF-DKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQYV 780
K+YA L T+ + K + KG++ VRRD C L K+ + +IL D+ V+ +
Sbjct: 1057 KKYAALVVEPTSDGNYITKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENI 1116
Query: 781 KSTISDLLMNRMDLSLLV----ITKGLTKTGDDYEVKAA--HVELAERMRKRDAATAPNV 834
+ + ++ N ++ S+ V I K LTK DY + + HV +A + +
Sbjct: 1117 QKRLIEIGENVLNGSVPVSQFEINKALTKDPQDYPDRKSLPHVHVALWINSQGGRKV-KA 1175
Query: 835 GDRVPYVIIKAAKGAKAYERSEDPIYVLE-NNIPIDTHYYLENQISKPLLRIFEPI 889
GD V YVI + A +R+ P + + +N+ IDT YYL QI + RI EPI
Sbjct: 1176 GDTVSYVICQDGSNLTATQRAYAPEQLQKLDNLAIDTQYYLAQQIHPVVARICEPI 1231
Score = 136 (52.9 bits), Expect = 2.4e-38, Sum P(4) = 2.4e-38
Identities = 27/58 (46%), Positives = 39/58 (67%)
Query: 487 NVKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTL--VTPE 542
N + G ++ TY G VL+ + GFY+K I LDF SLYPSI+ +N+C++T+ VT E
Sbjct: 832 NKYKKGRKKATYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVTSE 889
Score = 86 (35.3 bits), Expect = 2.4e-38, Sum P(4) = 2.4e-38
Identities = 13/37 (35%), Positives = 27/37 (72%)
Query: 365 TERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
TER ++ + + ++DPD+++G+NIC F+L L+++
Sbjct: 618 TERTLIGFFLAKVHKIDPDILVGHNICSFELEVLLQR 654
Score = 50 (22.7 bits), Expect = 1.4e-08, Sum P(4) = 1.4e-08
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 943 KGREAELYCKTVSQVQELEVLFG 965
KGRE ++ K + Q LEV++G
Sbjct: 983 KGREILMHTKDMVQKMNLEVIYG 1005
Score = 47 (21.6 bits), Expect = 2.4e-38, Sum P(4) = 2.4e-38
Identities = 24/106 (22%), Positives = 49/106 (46%)
Query: 391 CK-FDLPYLIEKEDVHHSIISDLQN-GNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYV 448
CK + L L+++ I+ +N N + +Y L+ + R + ++M N +
Sbjct: 707 CKSYHLSELVQQILKTERIVIPTENIRNMYSESSYLLYLLEHIWKDARFILQIMCELNVL 766
Query: 449 EMA-RVTGVP---ISFLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQ 490
+A ++T + +S L G+S + LL + N ++P+ KQ
Sbjct: 767 PLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPD-KQ 811
Score = 40 (19.1 bits), Expect = 1.8e-33, Sum P(3) = 1.8e-33
Identities = 23/99 (23%), Positives = 40/99 (40%)
Query: 366 ERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEKEDVHHSIISDLQNGNAETRRRLAV 425
E + + +D E D + Y I KF ++EK I D+ + R
Sbjct: 407 ETAIPVTMKDVYEEFDSKISAKYKIMKFKSK-IVEKNYAFE--IPDVPEKSEYLEVR--- 460
Query: 426 YCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPISFLLSR 464
Y + LPQ L + F++V + + + FL++R
Sbjct: 461 YSAEVPQLPQNLKGET---FSHVFGTNTSSLEL-FLMNR 495
>RGD|621816 [details] [associations]
symbol:Pola1 "polymerase (DNA directed), alpha 1, catalytic
subunit" species:10116 "Rattus norvegicus" [GO:0000084 "S phase of
mitotic cell cycle" evidence=ISO;ISS] [GO:0000166 "nucleotide
binding" evidence=IEA;ISO;ISS] [GO:0000731 "DNA synthesis involved
in DNA repair" evidence=ISO;ISS] [GO:0000785 "chromatin"
evidence=ISO;ISS] [GO:0001882 "nucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA;ISO;ISS] [GO:0003682
"chromatin binding" evidence=ISO;ISS] [GO:0003690 "double-stranded
DNA binding" evidence=IDA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA;ISO;ISS;IDA;IMP] [GO:0003896 "DNA primase
activity" evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=ISO;ISS]
[GO:0005635 "nuclear envelope" evidence=ISO;ISS] [GO:0005654
"nucleoplasm" evidence=ISO;ISS] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IC;ISO;ISS;IDA] [GO:0005730
"nucleolus" evidence=ISO;ISS] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA;ISO;ISS;IMP] [GO:0006269
"DNA replication, synthesis of RNA primer" evidence=ISO;ISS]
[GO:0006270 "DNA replication initiation" evidence=ISO;ISS]
[GO:0006271 "DNA strand elongation involved in DNA replication"
evidence=ISO;ISS] [GO:0006272 "leading strand elongation"
evidence=ISO;ISS] [GO:0006273 "lagging strand elongation"
evidence=ISO;ISS] [GO:0006281 "DNA repair" evidence=ISO;ISS]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=ISO;ISS;IBA] [GO:0008283 "cell
proliferation" evidence=ISO;ISS] [GO:0008408 "3'-5' exonuclease
activity" evidence=IBA] [GO:0016363 "nuclear matrix"
evidence=ISO;ISS] [GO:0017076 "purine nucleotide binding"
evidence=IMP] [GO:0019103 "pyrimidine nucleotide binding"
evidence=IMP] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=ISO]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR015088
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 Pfam:PF08996
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 RGD:621816
GO:GO:0005737 GO:GO:0005635 GO:GO:0005654 GO:GO:0005730
GO:GO:0046872 GO:GO:0008283 GO:GO:0000785 GO:GO:0003682
GO:GO:0051539 GO:GO:0006270 GO:GO:0003690 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0016363 GO:GO:0000084 GO:GO:0008408
GO:GO:0017076 GO:GO:0006303 GO:GO:0003896 GO:GO:0003887 KO:K02320
GO:GO:0006273 GO:GO:0006269 GO:GO:0006272 eggNOG:COG0417
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 CTD:5422 HOVERGEN:HBG080008 GO:GO:0019103
OrthoDB:EOG43XV2M EMBL:AJ011605 IPI:IPI00764174 RefSeq:NP_445931.1
UniGene:Rn.187125 UniGene:Rn.92345 ProteinModelPortal:O89042
SMR:O89042 STRING:O89042 PhosphoSite:O89042 PRIDE:O89042
GeneID:85241 KEGG:rno:85241 InParanoid:O89042 NextBio:617296
ArrayExpress:O89042 Genevestigator:O89042
GermOnline:ENSRNOG00000013322 Uniprot:O89042
Length = 1451
Score = 339 (124.4 bits), Expect = 3.3e-38, Sum P(4) = 3.3e-38
Identities = 96/296 (32%), Positives = 157/296 (53%)
Query: 604 DGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYE 663
D RQ ALK++ANS+YG G + + +++ VT GR+++ HTK++V+ +
Sbjct: 950 DIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQ---------K 1000
Query: 664 HNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLLISK 723
N EVIYGDTDS+M+ +E KLG + + ++ + K ++++ + V+ LL+ K
Sbjct: 1001 MNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKNEVNKLY-KLLEIDIDGVFKSLLLLKK 1059
Query: 724 KRYAGLYW--TNPEKF-DKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQYV 780
K+YA L T+ + K + KG++ VRRD C L K+ + +IL D+ V+ +
Sbjct: 1060 KKYAALVVEPTSDGNYITKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENI 1119
Query: 781 KSTISDLLMNRMDLSLLV----ITKGLTKTGDDYEVKAA--HVELAERMRKRDAATAPNV 834
+ + ++ N ++ S+ V I K LTK DY K + HV +A + +
Sbjct: 1120 QKRLIEIGENVLNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQGGRKV-KA 1178
Query: 835 GDRVPYVIIKAAKGAKAYERSEDPIYVL-ENNIPIDTHYYLENQISKPLLRIFEPI 889
GD V YVI + A +R+ P + ++N+ IDT YYL QI + RI EPI
Sbjct: 1179 GDTVSYVICQDGSNLPATQRAYAPEQLQKQDNLAIDTQYYLAQQIHPVVARICEPI 1234
Score = 129 (50.5 bits), Expect = 3.3e-38, Sum P(4) = 3.3e-38
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 487 NVKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTL 538
N + G ++ Y G VL+ + GFY+K I LDF SLYPSI+ +N+C++T+
Sbjct: 835 NKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTV 886
Score = 88 (36.0 bits), Expect = 3.3e-38, Sum P(4) = 3.3e-38
Identities = 40/169 (23%), Positives = 76/169 (44%)
Query: 247 FMIDCNIVGGNWIEVPVGKYRKTAKTLSYCQLEFDCLYSDIISRHPEGEFSKMAPFRILS 306
F+++ I G W+EV + + +S+C+ E L D+++ + P ++S
Sbjct: 494 FLMNRKIKGPCWLEVKNPQLLN--QPISWCKFEAMALKPDLVNVIKD---VSPPPLVVMS 548
Query: 307 FDIECAGR-KGHFPEPTHDPVIQVANL-VTLQGEKQPFIRNVMTL---KSCA-PIVGVDV 360
F ++ + H E + N + K PF + + K C P +V
Sbjct: 549 FSMKTMQNVQNHQHEIIAMAALVHHNFPLDKAPPKPPFQTHFCVVSKPKDCIFPCAFKEV 608
Query: 361 -----MSFE---TERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
M E TER +L + + ++DPD+++G+NIC F+L L+++
Sbjct: 609 IKKKNMEVEVAATERTLLGFFLAKVHKLDPDILVGHNICGFELEVLLQR 657
Score = 50 (22.7 bits), Expect = 8.9e-08, Sum P(4) = 8.9e-08
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 943 KGREAELYCKTVSQVQELEVLFG 965
KGRE ++ K + Q LEV++G
Sbjct: 986 KGREILMHTKEMVQKMNLEVIYG 1008
Score = 44 (20.5 bits), Expect = 3.3e-38, Sum P(4) = 3.3e-38
Identities = 24/106 (22%), Positives = 49/106 (46%)
Query: 391 CK-FDLPYLIEKEDVHHSIISDLQN-GNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYV 448
CK + L L+++ I+ +N N + +Y L+ + R + ++M N +
Sbjct: 710 CKSYHLSELVQQILKTERIVIPTENIRNMYSEPSHLLYLLEHIWKDARFILQIMCELNVL 769
Query: 449 EMA-RVTGVP---ISFLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQ 490
+A ++T + +S L G+S + LL + N ++P+ KQ
Sbjct: 770 PLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPD-KQ 814
Score = 39 (18.8 bits), Expect = 2.6e-33, Sum P(3) = 2.6e-33
Identities = 22/94 (23%), Positives = 38/94 (40%)
Query: 371 LAWRDFIREVDPDVMIGYNICKFDLPYLIEKEDVHHSIISDLQNGNAETRRRLAVYCLKD 430
+ +D E D + Y I KF ++EK I D+ + R Y +
Sbjct: 415 ITMKDVYEEFDSKISAKYKIMKFKSK-IVEKNYAFE--IPDVPEKSEYLEVR---YSAEV 468
Query: 431 AYLPQRLLDKLMFIFNYVEMARVTGVPISFLLSR 464
LPQ L + F++V + + + FL++R
Sbjct: 469 PQLPQNLKGET---FSHVFGTNTSSLEL-FLMNR 498
Score = 38 (18.4 bits), Expect = 6.7e-24, Sum P(3) = 6.7e-24
Identities = 14/59 (23%), Positives = 26/59 (44%)
Query: 478 AKQKNLVIPNV-KQAGSEQGT-YEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLC 534
+K K+ + P K+ ++ E A GF+ + LD P I++ +N+C
Sbjct: 594 SKPKDCIFPCAFKEVIKKKNMEVEVAATERTLLGFFLAKVHKLD-----PDILVGHNIC 647
>UNIPROTKB|O89042 [details] [associations]
symbol:Pola1 "DNA polymerase alpha catalytic subunit"
species:10116 "Rattus norvegicus" [GO:0001882 "nucleoside binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
RGD:621816 GO:GO:0005737 GO:GO:0005635 GO:GO:0005654 GO:GO:0005730
GO:GO:0046872 GO:GO:0008283 GO:GO:0000785 GO:GO:0003682
GO:GO:0051539 GO:GO:0006270 GO:GO:0003690 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0016363 GO:GO:0000084 GO:GO:0008408
GO:GO:0017076 GO:GO:0006303 GO:GO:0003896 GO:GO:0003887 KO:K02320
GO:GO:0006273 GO:GO:0006269 GO:GO:0006272 eggNOG:COG0417
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 CTD:5422 HOVERGEN:HBG080008 GO:GO:0019103
OrthoDB:EOG43XV2M EMBL:AJ011605 IPI:IPI00764174 RefSeq:NP_445931.1
UniGene:Rn.187125 UniGene:Rn.92345 ProteinModelPortal:O89042
SMR:O89042 STRING:O89042 PhosphoSite:O89042 PRIDE:O89042
GeneID:85241 KEGG:rno:85241 InParanoid:O89042 NextBio:617296
ArrayExpress:O89042 Genevestigator:O89042
GermOnline:ENSRNOG00000013322 Uniprot:O89042
Length = 1451
Score = 339 (124.4 bits), Expect = 3.3e-38, Sum P(4) = 3.3e-38
Identities = 96/296 (32%), Positives = 157/296 (53%)
Query: 604 DGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYE 663
D RQ ALK++ANS+YG G + + +++ VT GR+++ HTK++V+ +
Sbjct: 950 DIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQ---------K 1000
Query: 664 HNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLLISK 723
N EVIYGDTDS+M+ +E KLG + + ++ + K ++++ + V+ LL+ K
Sbjct: 1001 MNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKNEVNKLY-KLLEIDIDGVFKSLLLLKK 1059
Query: 724 KRYAGLYW--TNPEKF-DKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQYV 780
K+YA L T+ + K + KG++ VRRD C L K+ + +IL D+ V+ +
Sbjct: 1060 KKYAALVVEPTSDGNYITKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENI 1119
Query: 781 KSTISDLLMNRMDLSLLV----ITKGLTKTGDDYEVKAA--HVELAERMRKRDAATAPNV 834
+ + ++ N ++ S+ V I K LTK DY K + HV +A + +
Sbjct: 1120 QKRLIEIGENVLNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQGGRKV-KA 1178
Query: 835 GDRVPYVIIKAAKGAKAYERSEDPIYVL-ENNIPIDTHYYLENQISKPLLRIFEPI 889
GD V YVI + A +R+ P + ++N+ IDT YYL QI + RI EPI
Sbjct: 1179 GDTVSYVICQDGSNLPATQRAYAPEQLQKQDNLAIDTQYYLAQQIHPVVARICEPI 1234
Score = 129 (50.5 bits), Expect = 3.3e-38, Sum P(4) = 3.3e-38
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 487 NVKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTL 538
N + G ++ Y G VL+ + GFY+K I LDF SLYPSI+ +N+C++T+
Sbjct: 835 NKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTV 886
Score = 88 (36.0 bits), Expect = 3.3e-38, Sum P(4) = 3.3e-38
Identities = 40/169 (23%), Positives = 76/169 (44%)
Query: 247 FMIDCNIVGGNWIEVPVGKYRKTAKTLSYCQLEFDCLYSDIISRHPEGEFSKMAPFRILS 306
F+++ I G W+EV + + +S+C+ E L D+++ + P ++S
Sbjct: 494 FLMNRKIKGPCWLEVKNPQLLN--QPISWCKFEAMALKPDLVNVIKD---VSPPPLVVMS 548
Query: 307 FDIECAGR-KGHFPEPTHDPVIQVANL-VTLQGEKQPFIRNVMTL---KSCA-PIVGVDV 360
F ++ + H E + N + K PF + + K C P +V
Sbjct: 549 FSMKTMQNVQNHQHEIIAMAALVHHNFPLDKAPPKPPFQTHFCVVSKPKDCIFPCAFKEV 608
Query: 361 -----MSFE---TERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
M E TER +L + + ++DPD+++G+NIC F+L L+++
Sbjct: 609 IKKKNMEVEVAATERTLLGFFLAKVHKLDPDILVGHNICGFELEVLLQR 657
Score = 50 (22.7 bits), Expect = 8.9e-08, Sum P(4) = 8.9e-08
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 943 KGREAELYCKTVSQVQELEVLFG 965
KGRE ++ K + Q LEV++G
Sbjct: 986 KGREILMHTKEMVQKMNLEVIYG 1008
Score = 44 (20.5 bits), Expect = 3.3e-38, Sum P(4) = 3.3e-38
Identities = 24/106 (22%), Positives = 49/106 (46%)
Query: 391 CK-FDLPYLIEKEDVHHSIISDLQN-GNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYV 448
CK + L L+++ I+ +N N + +Y L+ + R + ++M N +
Sbjct: 710 CKSYHLSELVQQILKTERIVIPTENIRNMYSEPSHLLYLLEHIWKDARFILQIMCELNVL 769
Query: 449 EMA-RVTGVP---ISFLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQ 490
+A ++T + +S L G+S + LL + N ++P+ KQ
Sbjct: 770 PLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPD-KQ 814
Score = 39 (18.8 bits), Expect = 2.6e-33, Sum P(3) = 2.6e-33
Identities = 22/94 (23%), Positives = 38/94 (40%)
Query: 371 LAWRDFIREVDPDVMIGYNICKFDLPYLIEKEDVHHSIISDLQNGNAETRRRLAVYCLKD 430
+ +D E D + Y I KF ++EK I D+ + R Y +
Sbjct: 415 ITMKDVYEEFDSKISAKYKIMKFKSK-IVEKNYAFE--IPDVPEKSEYLEVR---YSAEV 468
Query: 431 AYLPQRLLDKLMFIFNYVEMARVTGVPISFLLSR 464
LPQ L + F++V + + + FL++R
Sbjct: 469 PQLPQNLKGET---FSHVFGTNTSSLEL-FLMNR 498
Score = 38 (18.4 bits), Expect = 6.7e-24, Sum P(3) = 6.7e-24
Identities = 14/59 (23%), Positives = 26/59 (44%)
Query: 478 AKQKNLVIPNV-KQAGSEQGT-YEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLC 534
+K K+ + P K+ ++ E A GF+ + LD P I++ +N+C
Sbjct: 594 SKPKDCIFPCAFKEVIKKKNMEVEVAATERTLLGFFLAKVHKLD-----PDILVGHNIC 647
>UNIPROTKB|P09884 [details] [associations]
symbol:POLA1 "DNA polymerase alpha catalytic subunit"
species:9606 "Homo sapiens" [GO:0001882 "nucleoside binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051539 "4 iron,
4 sulfur cluster binding" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IMP;IDA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0016363 "nuclear matrix" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005658 "alpha DNA polymerase:primase
complex" evidence=IDA;TAS] [GO:0000166 "nucleotide binding"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0006272
"leading strand elongation" evidence=IDA] [GO:0006273 "lagging
strand elongation" evidence=IDA] [GO:0005635 "nuclear envelope"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IMP] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=IMP] [GO:0008283 "cell proliferation" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA;NAS] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=IMP;TAS] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IDA;TAS] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0003896 "DNA primase activity" evidence=IDA] [GO:0006270 "DNA
replication initiation" evidence=IDA;TAS] [GO:0000082 "G1/S
transition of mitotic cell cycle" evidence=TAS] [GO:0000083
"regulation of transcription involved in G1/S phase of mitotic cell
cycle" evidence=TAS] [GO:0000216 "M/G1 transition of mitotic cell
cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] [GO:0032201
"telomere maintenance via semi-conservative replication"
evidence=TAS] [GO:0006269 "DNA replication, synthesis of RNA
primer" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=IDA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0005737 GO:GO:0005635 Reactome:REACT_115566 GO:GO:0019048
GO:GO:0005654 Reactome:REACT_21300 GO:GO:0005730 GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 GO:GO:0008283 GO:GO:0003682
GO:GO:0051539 GO:GO:0006270 GO:GO:0003690 GO:GO:0001882
DrugBank:DB01073 SUPFAM:SSF53098 GO:GO:0016363 GO:GO:0000216
GO:GO:0000084 GO:GO:0008408 GO:GO:0017076 GO:GO:0006303
GO:GO:0000722 GO:GO:0000083 Reactome:REACT_383 GO:GO:0003887
KO:K02320 DrugBank:DB00631 GO:GO:0032201 GO:GO:0006273
GO:GO:0006269 GO:GO:0006272 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 EMBL:X06745 EMBL:AY275833 EMBL:M64481
IPI:IPI00220317 PIR:S00257 RefSeq:NP_058633.2 UniGene:Hs.567319
PDB:1K0P PDB:1K18 PDB:1N5G PDBsum:1K0P PDBsum:1K18 PDBsum:1N5G
ProteinModelPortal:P09884 SMR:P09884 IntAct:P09884
MINT:MINT-1517478 STRING:P09884 PhosphoSite:P09884 DMDM:60392197
PaxDb:P09884 PRIDE:P09884 Ensembl:ENST00000379059 GeneID:5422
KEGG:hsa:5422 UCSC:uc004dbl.3 CTD:5422 GeneCards:GC0XP024712
H-InvDB:HIX0028476 HGNC:HGNC:9173 HPA:CAB012274 HPA:HPA002947
MIM:312040 neXtProt:NX_P09884 PharmGKB:PA162399856
HOVERGEN:HBG080008 PhylomeDB:P09884 BindingDB:P09884
ChEMBL:CHEMBL1828 ChiTaRS:POLA1 EvolutionaryTrace:P09884
GenomeRNAi:5422 NextBio:20977 ArrayExpress:P09884 Bgee:P09884
CleanEx:HS_POLA1 Genevestigator:P09884 GO:GO:0019103 Uniprot:P09884
Length = 1462
Score = 338 (124.0 bits), Expect = 3.5e-38, Sum P(4) = 3.5e-38
Identities = 96/296 (32%), Positives = 156/296 (52%)
Query: 604 DGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYE 663
D RQ ALK++ANS+YG G + + +++ VT GR+++ HTK++V+ +
Sbjct: 943 DIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQ---------K 993
Query: 664 HNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLLISK 723
N EVIYGDTDS+M+ +E KLG + ++ + K ++++ + V+ LL+ K
Sbjct: 994 MNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLY-KLLEIDIDGVFKSLLLLKK 1052
Query: 724 KRYAGLYW--TNPEKF-DKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQYV 780
K+YA L T+ + K + KG++ VRRD C L K+ + +IL D+ V+ +
Sbjct: 1053 KKYAALVVEPTSDGNYVTKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENI 1112
Query: 781 KSTISDLLMNRMDLSLLV----ITKGLTKTGDDYEVKAA--HVELAERMRKRDAATAPNV 834
+ + ++ N ++ S+ V I K LTK DY K + HV +A + +
Sbjct: 1113 QKRLIEIGENVLNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQGGRKV-KA 1171
Query: 835 GDRVPYVIIKAAKGAKAYERSEDPIYVL-ENNIPIDTHYYLENQISKPLLRIFEPI 889
GD V YVI + A +R+ P + ++N+ IDT YYL QI + RI EPI
Sbjct: 1172 GDTVSYVICQDGSNLTASQRAYAPEQLQKQDNLTIDTQYYLAQQIHPVVARICEPI 1227
Score = 130 (50.8 bits), Expect = 3.5e-38, Sum P(4) = 3.5e-38
Identities = 25/62 (40%), Positives = 40/62 (64%)
Query: 487 NVKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLV-TPEDAR 545
N + G ++ Y G VL+ + GFY+K I LDF SLYPSI+ +N+C++T+ +A+
Sbjct: 828 NKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASEAQ 887
Query: 546 KL 547
K+
Sbjct: 888 KV 889
Score = 86 (35.3 bits), Expect = 3.5e-38, Sum P(4) = 3.5e-38
Identities = 42/188 (22%), Positives = 85/188 (45%)
Query: 247 FMIDCNIVGGNWIEVPVGKYRKTAKTLSYCQLEFDCLYSDIISRHPEGEFSKMAPFRILS 306
F+++ I G W+EV + + +S+C++E L D+++ + P +++
Sbjct: 487 FLMNRKIKGPCWLEVKSPQLLN--QPVSWCKVEAMALKPDLVNVIKD---VSPPPLVVMA 541
Query: 307 FDIECA-GRKGHFPEP-THDPVIQVANLVTLQGEKQPFIRNVMTL---KSCA-PIVGVDV 360
F ++ K H E ++ + + K PF + + K C P +V
Sbjct: 542 FSMKTMQNAKNHQNEIIAMAALVHHSFALDKAAPKPPFQSHFCVVSKPKDCIFPYAFKEV 601
Query: 361 MSFE--------TERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEKEDV----HHSI 408
+ + TER +L + + ++DPD+++G+NI F+L L+++ +V H S
Sbjct: 602 IEKKNVKVEVAATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKAPHWSK 661
Query: 409 ISDLQNGN 416
I L+ N
Sbjct: 662 IGRLKRSN 669
Score = 50 (22.7 bits), Expect = 7.2e-08, Sum P(4) = 7.2e-08
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 943 KGREAELYCKTVSQVQELEVLFG 965
KGRE ++ K + Q LEV++G
Sbjct: 979 KGREILMHTKEMVQKMNLEVIYG 1001
Score = 46 (21.3 bits), Expect = 3.5e-38, Sum P(4) = 3.5e-38
Identities = 20/86 (23%), Positives = 44/86 (51%)
Query: 409 ISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMA-RVTGVP---ISFLLSR 464
+ ++QN +E+ + L Y L+ + + + ++M N + +A ++T + +S L
Sbjct: 725 MENIQNMYSESSQLL--YLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMG 782
Query: 465 GQSIKVLSQLLRKAKQKNLVIPNVKQ 490
G+S + LL + N ++P+ KQ
Sbjct: 783 GRSERNEFLLLHAFYENNYIVPD-KQ 807
>UNIPROTKB|A6NMQ1 [details] [associations]
symbol:POLA1 "DNA polymerase" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001882
"nucleoside binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR015088
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 Pfam:PF08996
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 HOGENOM:HOG000163524 OMA:GSGTDME
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592 HGNC:HGNC:9173
HOVERGEN:HBG080008 ChiTaRS:POLA1 OrthoDB:EOG43XV2M EMBL:AC002504
EMBL:AC004655 EMBL:AC079375 EMBL:AC135280 IPI:IPI00647655
ProteinModelPortal:A6NMQ1 SMR:A6NMQ1 STRING:A6NMQ1 PRIDE:A6NMQ1
Ensembl:ENST00000379068 ArrayExpress:A6NMQ1 Bgee:A6NMQ1
Uniprot:A6NMQ1
Length = 1468
Score = 338 (124.0 bits), Expect = 3.6e-38, Sum P(4) = 3.6e-38
Identities = 96/296 (32%), Positives = 156/296 (52%)
Query: 604 DGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYE 663
D RQ ALK++ANS+YG G + + +++ VT GR+++ HTK++V+ +
Sbjct: 949 DIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQ---------K 999
Query: 664 HNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLLISK 723
N EVIYGDTDS+M+ +E KLG + ++ + K ++++ + V+ LL+ K
Sbjct: 1000 MNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLY-KLLEIDIDGVFKSLLLLKK 1058
Query: 724 KRYAGLYW--TNPEKF-DKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQYV 780
K+YA L T+ + K + KG++ VRRD C L K+ + +IL D+ V+ +
Sbjct: 1059 KKYAALVVEPTSDGNYVTKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENI 1118
Query: 781 KSTISDLLMNRMDLSLLV----ITKGLTKTGDDYEVKAA--HVELAERMRKRDAATAPNV 834
+ + ++ N ++ S+ V I K LTK DY K + HV +A + +
Sbjct: 1119 QKRLIEIGENVLNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQGGRKV-KA 1177
Query: 835 GDRVPYVIIKAAKGAKAYERSEDPIYVL-ENNIPIDTHYYLENQISKPLLRIFEPI 889
GD V YVI + A +R+ P + ++N+ IDT YYL QI + RI EPI
Sbjct: 1178 GDTVSYVICQDGSNLTASQRAYAPEQLQKQDNLTIDTQYYLAQQIHPVVARICEPI 1233
Score = 130 (50.8 bits), Expect = 3.6e-38, Sum P(4) = 3.6e-38
Identities = 25/62 (40%), Positives = 40/62 (64%)
Query: 487 NVKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLV-TPEDAR 545
N + G ++ Y G VL+ + GFY+K I LDF SLYPSI+ +N+C++T+ +A+
Sbjct: 834 NKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASEAQ 893
Query: 546 KL 547
K+
Sbjct: 894 KV 895
Score = 86 (35.3 bits), Expect = 3.6e-38, Sum P(4) = 3.6e-38
Identities = 42/188 (22%), Positives = 85/188 (45%)
Query: 247 FMIDCNIVGGNWIEVPVGKYRKTAKTLSYCQLEFDCLYSDIISRHPEGEFSKMAPFRILS 306
F+++ I G W+EV + + +S+C++E L D+++ + P +++
Sbjct: 493 FLMNRKIKGPCWLEVKSPQLLN--QPVSWCKVEAMALKPDLVNVIKD---VSPPPLVVMA 547
Query: 307 FDIECA-GRKGHFPEP-THDPVIQVANLVTLQGEKQPFIRNVMTL---KSCA-PIVGVDV 360
F ++ K H E ++ + + K PF + + K C P +V
Sbjct: 548 FSMKTMQNAKNHQNEIIAMAALVHHSFALDKAAPKPPFQSHFCVVSKPKDCIFPYAFKEV 607
Query: 361 MSFE--------TERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEKEDV----HHSI 408
+ + TER +L + + ++DPD+++G+NI F+L L+++ +V H S
Sbjct: 608 IEKKNVKVEVAATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKAPHWSK 667
Query: 409 ISDLQNGN 416
I L+ N
Sbjct: 668 IGRLKRSN 675
Score = 50 (22.7 bits), Expect = 7.3e-08, Sum P(4) = 7.3e-08
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 943 KGREAELYCKTVSQVQELEVLFG 965
KGRE ++ K + Q LEV++G
Sbjct: 985 KGREILMHTKEMVQKMNLEVIYG 1007
Score = 46 (21.3 bits), Expect = 3.6e-38, Sum P(4) = 3.6e-38
Identities = 20/86 (23%), Positives = 44/86 (51%)
Query: 409 ISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMA-RVTGVP---ISFLLSR 464
+ ++QN +E+ + L Y L+ + + + ++M N + +A ++T + +S L
Sbjct: 731 MENIQNMYSESSQLL--YLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMG 788
Query: 465 GQSIKVLSQLLRKAKQKNLVIPNVKQ 490
G+S + LL + N ++P+ KQ
Sbjct: 789 GRSERNEFLLLHAFYENNYIVPD-KQ 813
>UNIPROTKB|Q59J89 [details] [associations]
symbol:Q59J89 "DNA polymerase" species:34903 "Trachemys
scripta" [GO:0000084 "S phase of mitotic cell cycle" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=ISS] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003682 "chromatin binding"
evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005635
"nuclear envelope" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0006269 "DNA replication,
synthesis of RNA primer" evidence=ISS] [GO:0006270 "DNA replication
initiation" evidence=ISS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=ISS] [GO:0006272 "leading
strand elongation" evidence=ISS] [GO:0006273 "lagging strand
elongation" evidence=ISS] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=ISS] [GO:0008283 "cell
proliferation" evidence=ISS] [GO:0016363 "nuclear matrix"
evidence=ISS] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS] [GO:0000785
"chromatin" evidence=ISS] [GO:0003896 "DNA primase activity"
evidence=ISS] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0005635 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
GO:GO:0003677 GO:GO:0008283 GO:GO:0003682 GO:GO:0006270
GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0016363 GO:GO:0000084
GO:GO:0006303 GO:GO:0003887 GO:GO:0006273 GO:GO:0006269
GO:GO:0006272 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
HOVERGEN:HBG080008 EMBL:AB178526 Uniprot:Q59J89
Length = 1441
Score = 350 (128.3 bits), Expect = 8.8e-38, Sum P(4) = 8.8e-38
Identities = 96/296 (32%), Positives = 156/296 (52%)
Query: 604 DGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYE 663
D RQ ALK++ANS+YG G + + +++ VT GR+++ HTK++V+ +
Sbjct: 912 DIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTHKGREILMHTKEMVQ---------K 962
Query: 664 HNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLLISK 723
N EVIYGDTDS+M+ +E KLG + ++ + K ++++ + V+ LL+ K
Sbjct: 963 MNLEVIYGDTDSIMINTNSTNLEEVFKLGNKIKSEVNKLY-KLLEIDIDGVFKSLLLLKK 1021
Query: 724 KRYAGLYW--TNPEKF-DKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQYV 780
K+YA L T K+ K + KG++ VRRD C L K + +IL D+ V+ +
Sbjct: 1022 KKYAALTVEPTGDGKYVTKQELKGLDIVRRDWCDLAKETGNYVIGQILSDQSRDTIVENI 1081
Query: 781 KSTISDL---LMN-RMDLSLLVITKGLTKTGDDYEVKAA--HVELAERMRKRDAATAPNV 834
+ + ++ ++N R+ +S I K LTK DY K + HV +A + ++
Sbjct: 1082 QRRLIEIGENVINGRVPISQFEINKALTKDPQDYPDKKSLPHVHVAMWINSQEGRKV-KA 1140
Query: 835 GDRVPYVIIKAAKGAKAYERSEDPIYVL-ENNIPIDTHYYLENQISKPLLRIFEPI 889
GD V YVI + A +R+ P + + N+ +DT YYL QI + RI EPI
Sbjct: 1141 GDTVSYVICQDGSNLSASQRAYAPEQLQKQENLTVDTQYYLSQQIHPVVARICEPI 1196
Score = 128 (50.1 bits), Expect = 8.8e-38, Sum P(4) = 8.8e-38
Identities = 25/61 (40%), Positives = 38/61 (62%)
Query: 487 NVKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLVTPE-DAR 545
N + G ++ Y G VL+ + GFY+ I LDF SLYPSI+ +N+C++T+ DA+
Sbjct: 797 NKSKIGRKKAAYAGGLVLDPKVGFYDTFILLLDFNSLYPSIIQEFNICFTTVQRESSDAQ 856
Query: 546 K 546
K
Sbjct: 857 K 857
Score = 80 (33.2 bits), Expect = 8.8e-38, Sum P(4) = 8.8e-38
Identities = 15/40 (37%), Positives = 28/40 (70%)
Query: 365 TERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEKEDV 404
TER +L + + ++DPD+++G+NI FDL L+++ +V
Sbjct: 584 TERTLLGFFLAKVHKIDPDIIVGHNIYGFDLEVLLQRINV 623
Score = 53 (23.7 bits), Expect = 3.0e-07, Sum P(3) = 3.0e-07
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 938 LCSHCKGREAELYCKTVSQVQELEVLFG 965
L +H KGRE ++ K + Q LEV++G
Sbjct: 944 LVTH-KGREILMHTKEMVQKMNLEVIYG 970
Score = 43 (20.2 bits), Expect = 3.0e-06, Sum P(3) = 3.0e-06
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 654 DKFTTVGGY-EHNAEVIYGDTDSVMVQFGVPTVE 686
DKF ++ GY E N ++ T S++ G P+ E
Sbjct: 1407 DKFLSMSGYSEVNLSKLF-QTFSIVKSVGDPSNE 1439
Score = 37 (18.1 bits), Expect = 8.8e-38, Sum P(4) = 8.8e-38
Identities = 6/9 (66%), Positives = 6/9 (66%)
Query: 935 NGTLCSHCK 943
NG LC CK
Sbjct: 1337 NGALCQACK 1345
>UNIPROTKB|F6Y1C9 [details] [associations]
symbol:POLA1 "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0001882 "nucleoside
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 OMA:GSGTDME InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891
Ensembl:ENSCAFT00000021463 EMBL:AAEX03026211 Uniprot:F6Y1C9
Length = 1467
Score = 335 (123.0 bits), Expect = 9.5e-38, Sum P(3) = 9.5e-38
Identities = 96/296 (32%), Positives = 154/296 (52%)
Query: 604 DGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYE 663
D RQ ALK++ANS+YG G + + +++ VT GR+++ HTK++V+ +
Sbjct: 949 DIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQ---------K 999
Query: 664 HNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLLISK 723
N EVIYGDTDS+M+ +E KLG + ++ + K ++++ + V+ LL+ K
Sbjct: 1000 MNLEVIYGDTDSIMINTNSTDLEEVYKLGNKVKSEVNKLY-KLLEIDIDGVFKSLLLLKK 1058
Query: 724 KRYAGLYW--TNPEKFD-KMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQYV 780
K+Y L T+ + K + KG++ VRRD C L K + +IL D+ V+ +
Sbjct: 1059 KKYGALVVEPTSDGNYSTKQELKGLDIVRRDWCDLAKETGNFVIGQILSDQSRDTIVENI 1118
Query: 781 KSTISDLLMNRMDLSLLV----ITKGLTKTGDDYEVKAA--HVELAERMRKRDAATAPNV 834
+ + ++ N ++ S+ V I K LTK DY K + HV +A M +
Sbjct: 1119 QKRLIEIGENVLNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWMNSQGGRKM-KA 1177
Query: 835 GDRVPYVIIKAAKGAKAYERSEDPIYVL-ENNIPIDTHYYLENQISKPLLRIFEPI 889
GD V YVI + A +R+ P + ++N+ IDT YYL QI + RI EPI
Sbjct: 1178 GDTVSYVICQDGSNLTASQRAYAPEQLQKQDNLTIDTQYYLAQQIHPVVARICEPI 1233
Score = 133 (51.9 bits), Expect = 9.5e-38, Sum P(3) = 9.5e-38
Identities = 24/52 (46%), Positives = 36/52 (69%)
Query: 487 NVKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTL 538
N + G ++ Y G VL+ +AGFY+K I LDF SLYPSI+ +N+C++T+
Sbjct: 834 NKYKKGRKKAAYAGGLVLDPKAGFYDKFILLLDFNSLYPSIIQEFNICFTTV 885
Score = 82 (33.9 bits), Expect = 9.5e-38, Sum P(3) = 9.5e-38
Identities = 23/73 (31%), Positives = 38/73 (52%)
Query: 348 TLKSCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEKEDV--- 404
T K V V TER +L + + ++DPD+++G+NI F+L L+++ +V
Sbjct: 603 TFKDYIKEKNVKVEIAATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKV 662
Query: 405 -HHSIISDLQNGN 416
H S I L+ N
Sbjct: 663 PHWSKIGRLKRSN 675
Score = 50 (22.7 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 943 KGREAELYCKTVSQVQELEVLFG 965
KGRE ++ K + Q LEV++G
Sbjct: 985 KGREILMHTKEMVQKMNLEVIYG 1007
Score = 47 (21.6 bits), Expect = 1.0e-33, Sum P(4) = 1.0e-33
Identities = 23/106 (21%), Positives = 50/106 (47%)
Query: 391 CK-FDLPYLIEKEDVHHSIISDLQN-GNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYV 448
CK + L L+++ ++ ++N N + +Y L+ + R + ++M N +
Sbjct: 709 CKSYHLSELVQQILRTERVVIPMENVRNMYSESSHLLYLLEHTWKDARFILQIMCELNVL 768
Query: 449 EMA-RVTGVP---ISFLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQ 490
+A ++T + +S L G+S + LL + N ++P+ KQ
Sbjct: 769 PLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPD-KQ 813
Score = 42 (19.8 bits), Expect = 1.0e-33, Sum P(4) = 1.0e-33
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 366 ERDVLLAWRDFIREVDPDVMIGYNICKF 393
E + L+ +D E D + Y I KF
Sbjct: 409 ETETLVTMKDVYDEFDEKIAAKYKIMKF 436
>UNIPROTKB|F1NR19 [details] [associations]
symbol:POLA1 "DNA polymerase" species:9031 "Gallus gallus"
[GO:0001882 "nucleoside binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0000084 "S
phase of mitotic cell cycle" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000785 "chromatin" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0003896 "DNA primase activity"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006270
"DNA replication initiation" evidence=IEA] [GO:0006272 "leading
strand elongation" evidence=IEA] [GO:0006273 "lagging strand
elongation" evidence=IEA] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0005737 GO:GO:0005635 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 GO:GO:0003677 GO:GO:0008283 GO:GO:0000785
GO:GO:0003682 GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0016363 GO:GO:0000084 GO:GO:0006303 GO:GO:0003896
GO:GO:0003887 GO:GO:0006273 GO:GO:0006269 GO:GO:0006272
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658 OMA:GSGTDME
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
GeneTree:ENSGT00550000074891 EMBL:AADN02011218 EMBL:AADN02011219
EMBL:AADN02011220 EMBL:AADN02011221 EMBL:AADN02011222
EMBL:AADN02011223 IPI:IPI00588123 Ensembl:ENSGALT00000026316
Uniprot:F1NR19
Length = 1462
Score = 336 (123.3 bits), Expect = 1.2e-37, Sum P(4) = 1.2e-37
Identities = 97/296 (32%), Positives = 155/296 (52%)
Query: 604 DGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYE 663
D RQ ALK++ANS+YG G + + +++ VT GR+++ HTK++V+ +
Sbjct: 933 DIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTHKGREILMHTKEMVQ---------K 983
Query: 664 HNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLLISK 723
N EVIYGDTDS+M+ ++ KLG + ++ + K ++++ + V+ LL+ K
Sbjct: 984 MNLEVIYGDTDSIMINTNSTNLDEVFKLGNKIKSEVNKLY-KLLEIDIDGVFKSLLLLKK 1042
Query: 724 KRYAGLYW--TNPEKF-DKMDTKGIETVRRDNCLLVKNLVTECLHKILVD--RDI-PGAV 777
K+YA L T K+ K + KG++ VRRD C L K + +IL D RDI +
Sbjct: 1043 KKYAALTVEPTGDGKYVTKQELKGLDIVRRDWCDLAKETGNYVIGQILSDQPRDIIVENI 1102
Query: 778 QYVKSTISDLLMN-RMDLSLLVITKGLTKTGDDYEVKAA--HVELAERMRKRDAATAPNV 834
Q I + ++N ++ ++ I K LTK DY K + HV +A + +
Sbjct: 1103 QRRLIEIGENVINGQIPVNQFEINKALTKDPQDYPDKKSLPHVHVAMWINSQGGRKV-KA 1161
Query: 835 GDRVPYVIIKAAKGAKAYERSEDPIYVL-ENNIPIDTHYYLENQISKPLLRIFEPI 889
GD V Y+I + A +R+ P + ++N+ IDT YYL QI + RI EPI
Sbjct: 1162 GDTVSYIICQDGSNLSASQRAYAPEQLQKQDNLTIDTQYYLSQQIHPVVARICEPI 1217
Score = 132 (51.5 bits), Expect = 1.2e-37, Sum P(4) = 1.2e-37
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 487 NVKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTL 538
N + G ++ Y G VL+ + GFY+K I LDF SLYPSI+ +N+C++T+
Sbjct: 818 NKSKIGKKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTV 869
Score = 87 (35.7 bits), Expect = 1.2e-37, Sum P(4) = 1.2e-37
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 365 TERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEKEDV----HHSIISDLQNGN 416
TER +L + I ++DPDV++G+NI FDL L+++ +V H S I L+ N
Sbjct: 605 TERTLLGFFLAKIHKIDPDVVVGHNIYGFDLEVLLQRINVCKVPHWSKIGRLRRSN 660
Score = 53 (23.7 bits), Expect = 7.1e-08, Sum P(4) = 7.1e-08
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 938 LCSHCKGREAELYCKTVSQVQELEVLFG 965
L +H KGRE ++ K + Q LEV++G
Sbjct: 965 LVTH-KGREILMHTKEMVQKMNLEVIYG 991
Score = 40 (19.1 bits), Expect = 1.2e-37, Sum P(4) = 1.2e-37
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 981 DVLCTSRDCPIFYRRKKAQKDMAEAKLQL 1009
D + T D F RRK +K+++EA +L
Sbjct: 1397 DKVITEEDRE-FVRRKPLRKEVSEAYRKL 1424
Score = 39 (18.8 bits), Expect = 1.0e-32, Sum P(4) = 1.0e-32
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 452 RVTGVPIS-FLLSRGQSIKVLSQLLRKA 478
R G+P++ F + R QS KV++ + +KA
Sbjct: 147 RSAGMPLNPFSVQR-QSPKVITPVSKKA 173
>UNIPROTKB|Q9DE46 [details] [associations]
symbol:pola1 "DNA polymerase alpha catalytic subunit"
species:8355 "Xenopus laevis" [GO:0000084 "S phase of mitotic cell
cycle" evidence=ISS] [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0003682 "chromatin
binding" evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005635 "nuclear envelope" evidence=ISS] [GO:0005654
"nucleoplasm" evidence=ISS] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006269 "DNA replication, synthesis of RNA primer"
evidence=ISS] [GO:0006270 "DNA replication initiation"
evidence=ISS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=ISS] [GO:0006272 "leading strand elongation"
evidence=ISS] [GO:0006273 "lagging strand elongation" evidence=ISS]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0016363 "nuclear matrix" evidence=ISS]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0000785 "chromatin"
evidence=ISS] [GO:0003896 "DNA primase activity" evidence=ISS]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR015088
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 Pfam:PF08996
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005635
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0008283 GO:GO:0003682 GO:GO:0051539
GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0016363
GO:GO:0000084 GO:GO:0006303 GO:GO:0003887 KO:K02320 GO:GO:0006273
GO:GO:0006269 GO:GO:0006272 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0005658 InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
CTD:5422 HOVERGEN:HBG080008 EMBL:AF202992 RefSeq:NP_001082055.1
UniGene:Xl.7596 ProteinModelPortal:Q9DE46 SMR:Q9DE46
MINT:MINT-7386218 GeneID:398200 KEGG:xla:398200
Xenbase:XB-GENE-1000552 Uniprot:Q9DE46
Length = 1458
Score = 337 (123.7 bits), Expect = 3.8e-37, Sum P(4) = 3.8e-37
Identities = 93/297 (31%), Positives = 154/297 (51%)
Query: 604 DGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYE 663
D RQ ALK++ANS+YG G + + +++ VT GR+++ HTK++V+ +
Sbjct: 939 DIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTHQGREILLHTKEMVQ---------K 989
Query: 664 HNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLLISK 723
N EVIYGDTDS+M+ +E KLG I+ ++ K ++++ + ++ LL+ K
Sbjct: 990 MNLEVIYGDTDSIMINTNCNNLEEVFKLGNRVKSEINKSY-KLLEIDIDGIFKSLLLLKK 1048
Query: 724 KRYAGLYW--TNPEKF-DKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQYV 780
K+YA L T K+ K + KG++ VRRD C L K + +IL D+ V+ +
Sbjct: 1049 KKYAALTVEPTGDGKYVTKQELKGLDIVRRDWCELAKQAGNYVISQILSDQPRDSIVENI 1108
Query: 781 KSTISDLLMN----RMDLSLLVITKGLTKTGDDYEVKAA--HVELAERMRKRDAATAPNV 834
+ ++++ N + ++ I K LTK DY K + HV +A + +
Sbjct: 1109 QKKLTEIGENVTNGTVPITQYEINKALTKDPQDYPDKKSLPHVHVALWINSQGGRKV-KA 1167
Query: 835 GDRVPYVIIKAAKGAKAYERS--EDPIYVLENNIPIDTHYYLENQISKPLLRIFEPI 889
GD + YVI + A +R+ ++ + EN + IDT YYL Q+ + RI EPI
Sbjct: 1168 GDTISYVICQDGSNLSASQRAYAQEQLQKQEN-LSIDTQYYLSQQVHPVVARICEPI 1223
Score = 132 (51.5 bits), Expect = 3.8e-37, Sum P(4) = 3.8e-37
Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 489 KQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTL 538
K ++ Y G VLE + GFY+K I LDF SLYPSI+ YN+C++T+
Sbjct: 829 KNKSRKKAAYAGGLVLEPKVGFYDKFILLLDFNSLYPSIIQEYNICFTTV 878
Score = 75 (31.5 bits), Expect = 3.8e-37, Sum P(4) = 3.8e-37
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 365 TERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
TER +L + I ++DPDV++G++I FDL L+++
Sbjct: 614 TERTLLGFFLAKIHKIDPDVIVGHDIYGFDLEVLLQR 650
Score = 51 (23.0 bits), Expect = 4.2e-07, Sum P(4) = 4.2e-07
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 938 LCSHCKGREAELYCKTVSQVQELEVLFG 965
L +H +GRE L+ K + Q LEV++G
Sbjct: 971 LVTH-QGREILLHTKEMVQKMNLEVIYG 997
Score = 46 (21.3 bits), Expect = 3.8e-37, Sum P(4) = 3.8e-37
Identities = 14/67 (20%), Positives = 35/67 (52%)
Query: 425 VYCLKDAYLPQRLLDKLMFIFNYVEMA-RVTGVP---ISFLLSRGQSIKVLSQLLRKAKQ 480
+Y L++ ++ + + ++M N + +A ++T + +S L G+S + LL +
Sbjct: 739 LYMLENTWIDAKFILQIMCELNVLPLALQITNIAGNVMSRTLMGGRSERNEYLLLHAFTE 798
Query: 481 KNLVIPN 487
N ++P+
Sbjct: 799 NNFIVPD 805
>UNIPROTKB|E1BJF4 [details] [associations]
symbol:POLA1 "DNA polymerase" species:9913 "Bos taurus"
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0016363 "nuclear matrix" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IEA] [GO:0006303 "double-strand break
repair via nonhomologous end joining" evidence=IEA] [GO:0006273
"lagging strand elongation" evidence=IEA] [GO:0006272 "leading
strand elongation" evidence=IEA] [GO:0006270 "DNA replication
initiation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0003896 "DNA primase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000785 "chromatin" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000084 "S phase of mitotic
cell cycle" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0001882 "nucleoside binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0005737 GO:GO:0005635 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 GO:GO:0003677 GO:GO:0008283 GO:GO:0000785
GO:GO:0003682 GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0016363 GO:GO:0000084 GO:GO:0006303 GO:GO:0003896
GO:GO:0003887 GO:GO:0006273 GO:GO:0006269 GO:GO:0006272
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658 OMA:GSGTDME
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
GeneTree:ENSGT00550000074891 EMBL:DAAA02074352 IPI:IPI00717665
Ensembl:ENSBTAT00000010742 Uniprot:E1BJF4
Length = 1351
Score = 338 (124.0 bits), Expect = 3.8e-37, Sum P(4) = 3.8e-37
Identities = 95/296 (32%), Positives = 157/296 (53%)
Query: 604 DGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYE 663
D RQ ALK++ANS+YG G + + +++ VT GR+++ HTK++V+ +
Sbjct: 951 DIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQ---------K 1001
Query: 664 HNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLLISK 723
N EVIYGDTDS+M+ +E KLG + ++ + K ++++ + ++ LL+ K
Sbjct: 1002 MNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLY-KLLEIDIDGIFKSLLLLKK 1060
Query: 724 KRYAGLYW--TNPEKF-DKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQYV 780
K+YA L T+ + K + KG++ VRRD C L K+ + +IL D++ V+ +
Sbjct: 1061 KKYAALIVEPTSDGNYVTKQEVKGLDIVRRDWCDLAKDTGNFVIGQILSDQNRDTIVENI 1120
Query: 781 KSTISDLLMNRMDLSLLV----ITKGLTKTGDDYEVKAA--HVELAERMRKRDAATAPNV 834
+ + ++ N ++ S+ V I K LTK DY K + HV +A + +
Sbjct: 1121 QKRLIEIGENVLNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQGGRKV-KA 1179
Query: 835 GDRVPYVIIKAAKGAKAYERSEDPIYVL-ENNIPIDTHYYLENQISKPLLRIFEPI 889
GD V YVI + A +R+ P + ++N+ IDT YYL QI + RI EPI
Sbjct: 1180 GDTVSYVICQDGSNLTAGQRAYAPEQLQKQDNLSIDTQYYLAQQIHPVVARICEPI 1235
Score = 131 (51.2 bits), Expect = 3.8e-37, Sum P(4) = 3.8e-37
Identities = 25/62 (40%), Positives = 40/62 (64%)
Query: 487 NVKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLV-TPEDAR 545
N + G ++ Y G VL+ + GFY+K I LDF SLYPSI+ +N+C++T+ +A+
Sbjct: 834 NKYKKGRKKAAYSGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASEAQ 893
Query: 546 KL 547
K+
Sbjct: 894 KV 895
Score = 77 (32.2 bits), Expect = 3.8e-37, Sum P(4) = 3.8e-37
Identities = 17/49 (34%), Positives = 33/49 (67%)
Query: 356 VGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEKEDV 404
V V+V + TER +L + + ++DPD+++G+NI F+L L+++ +V
Sbjct: 613 VKVEVAA--TERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINV 659
Score = 50 (22.7 bits), Expect = 7.5e-07, Sum P(4) = 7.5e-07
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 943 KGREAELYCKTVSQVQELEVLFG 965
KGRE ++ K + Q LEV++G
Sbjct: 987 KGREILMHTKEMVQKMNLEVIYG 1009
Score = 42 (19.8 bits), Expect = 3.8e-37, Sum P(4) = 3.8e-37
Identities = 17/70 (24%), Positives = 35/70 (50%)
Query: 425 VYCLKDAYLPQRLLDKLMFIFNYVEMA-RVTGVP---ISFLLSRGQSIKVLSQLLRKAKQ 480
+Y L+ + R + ++M N + +A ++T + +S L G+S + LL +
Sbjct: 745 LYLLEHTWKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYE 804
Query: 481 KNLVIPNVKQ 490
N ++P+ KQ
Sbjct: 805 NNYIVPD-KQ 813
>UNIPROTKB|E2QVU2 [details] [associations]
symbol:POLA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0001882 "nucleoside
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 Ensembl:ENSCAFT00000021463 Uniprot:E2QVU2
Length = 1357
Score = 335 (123.0 bits), Expect = 5.9e-37, Sum P(3) = 5.9e-37
Identities = 96/296 (32%), Positives = 154/296 (52%)
Query: 604 DGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYE 663
D RQ ALK++ANS+YG G + + +++ VT GR+++ HTK++V+ +
Sbjct: 950 DIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQ---------K 1000
Query: 664 HNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLLISK 723
N EVIYGDTDS+M+ +E KLG + ++ + K ++++ + V+ LL+ K
Sbjct: 1001 MNLEVIYGDTDSIMINTNSTDLEEVYKLGNKVKSEVNKLY-KLLEIDIDGVFKSLLLLKK 1059
Query: 724 KRYAGLYW--TNPEKFD-KMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQYV 780
K+Y L T+ + K + KG++ VRRD C L K + +IL D+ V+ +
Sbjct: 1060 KKYGALVVEPTSDGNYSTKQELKGLDIVRRDWCDLAKETGNFVIGQILSDQSRDTIVENI 1119
Query: 781 KSTISDLLMNRMDLSLLV----ITKGLTKTGDDYEVKAA--HVELAERMRKRDAATAPNV 834
+ + ++ N ++ S+ V I K LTK DY K + HV +A M +
Sbjct: 1120 QKRLIEIGENVLNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWMNSQGGRKM-KA 1178
Query: 835 GDRVPYVIIKAAKGAKAYERSEDPIYVL-ENNIPIDTHYYLENQISKPLLRIFEPI 889
GD V YVI + A +R+ P + ++N+ IDT YYL QI + RI EPI
Sbjct: 1179 GDTVSYVICQDGSNLTASQRAYAPEQLQKQDNLTIDTQYYLAQQIHPVVARICEPI 1234
Score = 124 (48.7 bits), Expect = 5.9e-37, Sum P(3) = 5.9e-37
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 487 NVKQAGSEQGTYEGATVLEARA-GFYEKPIATLDFASLYPSIMMAYNLCYSTL 538
N + G ++ Y G VL+ +A GFY+K I LDF SLYPSI+ +N+C++T+
Sbjct: 834 NKYKKGRKKAAYAGGLVLDPKAAGFYDKFILLLDFNSLYPSIIQEFNICFTTV 886
Score = 82 (33.9 bits), Expect = 5.9e-37, Sum P(3) = 5.9e-37
Identities = 23/73 (31%), Positives = 38/73 (52%)
Query: 348 TLKSCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEKEDV--- 404
T K V V TER +L + + ++DPD+++G+NI F+L L+++ +V
Sbjct: 603 TFKDYIKEKNVKVEIAATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKV 662
Query: 405 -HHSIISDLQNGN 416
H S I L+ N
Sbjct: 663 PHWSKIGRLKRSN 675
Score = 50 (22.7 bits), Expect = 8.0e-07, Sum P(3) = 8.0e-07
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 943 KGREAELYCKTVSQVQELEVLFG 965
KGRE ++ K + Q LEV++G
Sbjct: 986 KGREILMHTKEMVQKMNLEVIYG 1008
Score = 47 (21.6 bits), Expect = 5.4e-33, Sum P(4) = 5.4e-33
Identities = 23/106 (21%), Positives = 50/106 (47%)
Query: 391 CK-FDLPYLIEKEDVHHSIISDLQN-GNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYV 448
CK + L L+++ ++ ++N N + +Y L+ + R + ++M N +
Sbjct: 709 CKSYHLSELVQQILRTERVVIPMENVRNMYSESSHLLYLLEHTWKDARFILQIMCELNVL 768
Query: 449 EMA-RVTGVP---ISFLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQ 490
+A ++T + +S L G+S + LL + N ++P+ KQ
Sbjct: 769 PLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPD-KQ 813
Score = 42 (19.8 bits), Expect = 5.4e-33, Sum P(4) = 5.4e-33
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 366 ERDVLLAWRDFIREVDPDVMIGYNICKF 393
E + L+ +D E D + Y I KF
Sbjct: 409 ETETLVTMKDVYDEFDEKIAAKYKIMKF 436
>UNIPROTKB|Q59J90 [details] [associations]
symbol:Q59J90 "DNA polymerase" species:8296 "Ambystoma
mexicanum" [GO:0000084 "S phase of mitotic cell cycle"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0003682 "chromatin
binding" evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005635 "nuclear envelope" evidence=ISS] [GO:0005654
"nucleoplasm" evidence=ISS] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006269 "DNA replication, synthesis of RNA primer"
evidence=ISS] [GO:0006270 "DNA replication initiation"
evidence=ISS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=ISS] [GO:0006272 "leading strand elongation"
evidence=ISS] [GO:0006273 "lagging strand elongation" evidence=ISS]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0016363 "nuclear matrix" evidence=ISS]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0000785 "chromatin"
evidence=ISS] [GO:0003896 "DNA primase activity" evidence=ISS]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR015088
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 Pfam:PF08996
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005635
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 GO:GO:0003677
GO:GO:0008283 GO:GO:0003682 GO:GO:0006270 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0016363 GO:GO:0000084 GO:GO:0006303
GO:GO:0003887 GO:GO:0006273 GO:GO:0006269 GO:GO:0006272
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
TIGRFAMs:TIGR00592 HOVERGEN:HBG080008 EMBL:AB178525 Uniprot:Q59J90
Length = 1409
Score = 325 (119.5 bits), Expect = 6.1e-36, Sum P(5) = 6.1e-36
Identities = 94/300 (31%), Positives = 153/300 (51%)
Query: 604 DGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYE 663
D RQ ALK++ANS+YG G + + +++ VT GR+++ HT+ +V+ +
Sbjct: 890 DIRQKALKLTANSMYGCLGFSFSRFYAKPLAALVTHKGREILLHTRDMVQ---------K 940
Query: 664 HNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLLISK 723
N EVIYGDTDS+M+ +E KLG + ++ + K ++++ + V+ LL+ K
Sbjct: 941 MNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLY-KQLEIDIDGVFKSLLLLKK 999
Query: 724 KRYAGLYW--TNPEKF-DKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQYV 780
K+YA L K+ K + KG++ VRRD C L K + +IL D+ V+ +
Sbjct: 1000 KKYAALTMEPAGDGKYVTKQELKGLDIVRRDWCDLAKETGNYIITQILSDQPRDTIVENI 1059
Query: 781 KSTISDLLMNRMDLSLLV----ITKGLTKTGDDYEVKAA--HVELAERMRKRDAATAPNV 834
+ + ++ N ++ S+ + I K LTK DY K + HV +A + +
Sbjct: 1060 QKQLIEIGENVVNGSIPINQYEINKALTKDPQDYPDKKSLPHVHVALWINSQGGRKM-KA 1118
Query: 835 GDRVPYVIIKAAKGAKAYERSEDPIYVLE-----NNIPIDTHYYLENQISKPLLRIFEPI 889
GD V Y+I + A +R+ Y LE +N+ IDT YYL Q+ + RI EPI
Sbjct: 1119 GDTVSYIICQDGSNLSASQRA----YALEQLQKQDNLAIDTQYYLSQQVHPVVARICEPI 1174
Score = 123 (48.4 bits), Expect = 6.1e-36, Sum P(5) = 6.1e-36
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 494 EQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLVTPEDARKLNLP 550
++ Y G VL+ + GFY+K I LDF SLYPSI+ +N+C++T V D+ +P
Sbjct: 782 KKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTT-VQRLDSNAQKMP 837
Score = 74 (31.1 bits), Expect = 6.1e-36, Sum P(5) = 6.1e-36
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 365 TERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEKEDV 404
TER +L I ++DPDV++G++I FDL L+++ +V
Sbjct: 561 TERTLLGFLLAKIHKIDPDVIVGHDIYGFDLEVLLQRINV 600
Score = 54 (24.1 bits), Expect = 6.1e-36, Sum P(5) = 6.1e-36
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 247 FMIDCNIVGGNWIEVPVGKYRKTAKTLSYCQLEFDCLYSDIIS 289
F++ I G +W+E+ + + + +S+C++E L D++S
Sbjct: 434 FLLSRKIKGPSWLEIKTPQL--SFQPVSWCKVEAVALKPDLVS 474
Score = 52 (23.4 bits), Expect = 2.2e-07, Sum P(5) = 2.2e-07
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 938 LCSHCKGREAELYCKTVSQVQELEVLFG 965
L +H KGRE L+ + + Q LEV++G
Sbjct: 922 LVTH-KGREILLHTRDMVQKMNLEVIYG 948
Score = 45 (20.9 bits), Expect = 6.1e-36, Sum P(5) = 6.1e-36
Identities = 15/67 (22%), Positives = 34/67 (50%)
Query: 425 VYCLKDAYLPQRLLDKLMFIFNYVEMA-RVTGVP---ISFLLSRGQSIKVLSQLLRKAKQ 480
+Y L+ +L + + ++M N + +A ++T + +S L G+S + LL +
Sbjct: 686 LYMLEHTWLDTKFILQIMCELNVLPLALQITNIAGNVMSRTLMGGRSERNEYLLLHAFYE 745
Query: 481 KNLVIPN 487
N ++P+
Sbjct: 746 NNFIVPD 752
>UNIPROTKB|Q9NAH1 [details] [associations]
symbol:Y47D3A.29 "DNA polymerase" species:6239
"Caenorhabditis elegans" [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0006260 "DNA replication" evidence=IBA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0008340 GO:GO:0009792 GO:GO:0035046 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0008408 GO:GO:0006303 GO:GO:0003887 EMBL:AL117202
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891 HSSP:Q56366
GeneID:176544 KEGG:cel:CELE_Y47D3A.29 CTD:176544
RefSeq:NP_001255109.1 ProteinModelPortal:Q9NAH1 SMR:Q9NAH1
IntAct:Q9NAH1 MINT:MINT-6669806 STRING:Q9NAH1
EnsemblMetazoa:Y47D3A.29a UCSC:Y47D3A.29 WormBase:Y47D3A.29a
InParanoid:Q9NAH1 NextBio:893018 ArrayExpress:Q9NAH1 Uniprot:Q9NAH1
Length = 1428
Score = 327 (120.2 bits), Expect = 5.7e-35, Sum P(4) = 5.7e-35
Identities = 122/399 (30%), Positives = 191/399 (47%)
Query: 599 EKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTT 658
+K +D RQ+ALK++ANS+YG G + +++ VT+ GR+++ H+K LVE
Sbjct: 905 KKKQMDIRQMALKLTANSMYGCLGFQYSRFYAKPLAALVTAKGREILMHSKDLVEKM--- 961
Query: 659 VGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPY 718
GY V+YGDTDS+M+ + AA KLG E ++ + ++L+ + V+
Sbjct: 962 --GYS----VVYGDTDSIMINTNSVDLVAAKKLGNEIKKAVNKCH-RLLELDLDGVFKRM 1014
Query: 719 LLISKKRYAGLYWTNPE-KFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAV 777
LL+ KK+YA L NP+ K + + KG++ VRRD L K T + KIL D +
Sbjct: 1015 LLLKKKKYAALT-INPDTKVEAKELKGLDIVRRDWSQLAKETGTAVVDKIL-DASLTR-- 1070
Query: 778 QYVKSTISDLLMN---RMD-----LSLLVITKGLTKTGDDY-EVKA-AHVELAERMRKRD 827
+ S+I DLL ++D L + I+K LT+ + Y +VKA H +A+R+ K
Sbjct: 1071 DEMVSSIDDLLREIRAKLDSGTVPLEMFQISKQLTRNPEQYADVKAQCHAAVAQRLNKSG 1130
Query: 828 AATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENN-IPIDTHYYLENQISKPLLRIF 886
+ D V YVI + A +R+ + EN+ + ID YYL QI + R+
Sbjct: 1131 KFNLRH-NDIVEYVICEDGTDNPATQRAYHRTEMAENSALKIDLLYYLAQQIHPVVSRLV 1189
Query: 887 EPILKNAS---KELLSGDHT---RSISISTPSNSGIMKFAKRQLSCIGCKALISNGTL-- 938
EPI + + E L D T R+ + + A Q + C+ + L
Sbjct: 1190 EPIEETDAVRIAENLGLDSTNYRRAAAAQASQRAAEEDCAWHQENYDLCEGIHVICPLDG 1249
Query: 939 CSHCKGREAELYCKTVSQVQELEVLFGRLWTQCQECQGS 977
C H C T + L L++ C +CQGS
Sbjct: 1250 CGHSNVIRETFDCVTDASSPRL------LFSGCAQCQGS 1282
Score = 143 (55.4 bits), Expect = 5.7e-35, Sum P(4) = 5.7e-35
Identities = 42/138 (30%), Positives = 73/138 (52%)
Query: 430 DAYLPQRLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNV- 488
D L R++ +L + Y++++++ G S + G++ + LL ++ +L+ P+
Sbjct: 733 DLLLSLRIVVRLNALPLYIQISQIVGGIASRTMMGGRAERNEYLLLHAFEKADLIAPDKY 792
Query: 489 -------KQAGSEQGT--------YEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNL 533
K+ S++G Y G VLE + G YE I LDF SLYPSI+ YN+
Sbjct: 793 NSSESKKKKEESQEGDEKKSGKAQYSGGLVLEPKKGLYETLILLLDFNSLYPSIIQEYNI 852
Query: 534 CYSTLVTPEDA-RKLNLP 550
CY+TL +D+ +L++P
Sbjct: 853 CYTTLEYSKDSDEQLSVP 870
Score = 52 (23.4 bits), Expect = 5.7e-35, Sum P(4) = 5.7e-35
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 236 TYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAKTLSYCQLEFD 281
T+ ++V R +I+ +G WIE+ K AKT S C+ EF+
Sbjct: 457 TFNTSVTPLERLLIEKKFMGPGWIELYNYSDPK-AKT-SNCKYEFE 500
Score = 47 (21.6 bits), Expect = 5.7e-35, Sum P(4) = 5.7e-35
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 360 VMSFETERDVLLAWRDFIREVDPDVMIGYNI 390
V S E+ +L + I E +PD+++G+++
Sbjct: 595 VKSVANEKALLTLFLAMINEDEPDMIVGHDL 625
Score = 44 (20.5 bits), Expect = 1.4e-24, Sum P(3) = 1.4e-24
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 368 DVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK-EDVHHSIISDLQNGNAETRRRLAVY 426
+ L+ DF + P ++ YNIC L Y + E + +D++ R+L V
Sbjct: 831 ETLILLLDF-NSLYPSIIQEYNICYTTLEYSKDSDEQLSVPQSTDIEGVLPREIRKL-VE 888
Query: 427 CLKD 430
C +D
Sbjct: 889 CRRD 892
>WB|WBGene00012936 [details] [associations]
symbol:Y47D3A.29a species:6239 "Caenorhabditis elegans"
[GO:0006260 "DNA replication" evidence=IEA;ISS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0001882 "nucleoside binding" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0035046 "pronuclear migration" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
[GO:0005634 "nucleus" evidence=ISS] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR015088 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 Pfam:PF08996 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0008340 GO:GO:0009792
GO:GO:0035046 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006303
GO:GO:0003887 EMBL:AL117202 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 OMA:GSGTDME InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891
RefSeq:NP_001255108.1 ProteinModelPortal:C7IVS4 SMR:C7IVS4
STRING:C7IVS4 PaxDb:C7IVS4 EnsemblMetazoa:Y47D3A.29b GeneID:176544
KEGG:cel:CELE_Y47D3A.29 CTD:176544 WormBase:Y47D3A.29b
ArrayExpress:C7IVS4 Uniprot:C7IVS4
Length = 1456
Score = 327 (120.2 bits), Expect = 6.3e-35, Sum P(4) = 6.3e-35
Identities = 122/399 (30%), Positives = 191/399 (47%)
Query: 599 EKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTT 658
+K +D RQ+ALK++ANS+YG G + +++ VT+ GR+++ H+K LVE
Sbjct: 905 KKKQMDIRQMALKLTANSMYGCLGFQYSRFYAKPLAALVTAKGREILMHSKDLVEKM--- 961
Query: 659 VGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPY 718
GY V+YGDTDS+M+ + AA KLG E ++ + ++L+ + V+
Sbjct: 962 --GYS----VVYGDTDSIMINTNSVDLVAAKKLGNEIKKAVNKCH-RLLELDLDGVFKRM 1014
Query: 719 LLISKKRYAGLYWTNPE-KFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAV 777
LL+ KK+YA L NP+ K + + KG++ VRRD L K T + KIL D +
Sbjct: 1015 LLLKKKKYAALT-INPDTKVEAKELKGLDIVRRDWSQLAKETGTAVVDKIL-DASLTR-- 1070
Query: 778 QYVKSTISDLLMN---RMD-----LSLLVITKGLTKTGDDY-EVKA-AHVELAERMRKRD 827
+ S+I DLL ++D L + I+K LT+ + Y +VKA H +A+R+ K
Sbjct: 1071 DEMVSSIDDLLREIRAKLDSGTVPLEMFQISKQLTRNPEQYADVKAQCHAAVAQRLNKSG 1130
Query: 828 AATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENN-IPIDTHYYLENQISKPLLRIF 886
+ D V YVI + A +R+ + EN+ + ID YYL QI + R+
Sbjct: 1131 KFNLRH-NDIVEYVICEDGTDNPATQRAYHRTEMAENSALKIDLLYYLAQQIHPVVSRLV 1189
Query: 887 EPILKNAS---KELLSGDHT---RSISISTPSNSGIMKFAKRQLSCIGCKALISNGTL-- 938
EPI + + E L D T R+ + + A Q + C+ + L
Sbjct: 1190 EPIEETDAVRIAENLGLDSTNYRRAAAAQASQRAAEEDCAWHQENYDLCEGIHVICPLDG 1249
Query: 939 CSHCKGREAELYCKTVSQVQELEVLFGRLWTQCQECQGS 977
C H C T + L L++ C +CQGS
Sbjct: 1250 CGHSNVIRETFDCVTDASSPRL------LFSGCAQCQGS 1282
Score = 143 (55.4 bits), Expect = 6.3e-35, Sum P(4) = 6.3e-35
Identities = 42/138 (30%), Positives = 73/138 (52%)
Query: 430 DAYLPQRLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNV- 488
D L R++ +L + Y++++++ G S + G++ + LL ++ +L+ P+
Sbjct: 733 DLLLSLRIVVRLNALPLYIQISQIVGGIASRTMMGGRAERNEYLLLHAFEKADLIAPDKY 792
Query: 489 -------KQAGSEQGT--------YEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNL 533
K+ S++G Y G VLE + G YE I LDF SLYPSI+ YN+
Sbjct: 793 NSSESKKKKEESQEGDEKKSGKAQYSGGLVLEPKKGLYETLILLLDFNSLYPSIIQEYNI 852
Query: 534 CYSTLVTPEDA-RKLNLP 550
CY+TL +D+ +L++P
Sbjct: 853 CYTTLEYSKDSDEQLSVP 870
Score = 52 (23.4 bits), Expect = 6.3e-35, Sum P(4) = 6.3e-35
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 236 TYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAKTLSYCQLEFD 281
T+ ++V R +I+ +G WIE+ K AKT S C+ EF+
Sbjct: 457 TFNTSVTPLERLLIEKKFMGPGWIELYNYSDPK-AKT-SNCKYEFE 500
Score = 47 (21.6 bits), Expect = 6.3e-35, Sum P(4) = 6.3e-35
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 360 VMSFETERDVLLAWRDFIREVDPDVMIGYNI 390
V S E+ +L + I E +PD+++G+++
Sbjct: 595 VKSVANEKALLTLFLAMINEDEPDMIVGHDL 625
Score = 44 (20.5 bits), Expect = 1.5e-24, Sum P(3) = 1.5e-24
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 368 DVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK-EDVHHSIISDLQNGNAETRRRLAVY 426
+ L+ DF + P ++ YNIC L Y + E + +D++ R+L V
Sbjct: 831 ETLILLLDF-NSLYPSIIQEYNICYTTLEYSKDSDEQLSVPQSTDIEGVLPREIRKL-VE 888
Query: 427 CLKD 430
C +D
Sbjct: 889 CRRD 892
>UNIPROTKB|C7IVS4 [details] [associations]
symbol:Y47D3A.29 "DNA polymerase" species:6239
"Caenorhabditis elegans" [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0006260 "DNA replication" evidence=IBA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0008340 GO:GO:0009792 GO:GO:0035046 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0008408 GO:GO:0006303 GO:GO:0003887 EMBL:AL117202
eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0005658 HOGENOM:HOG000163524 OMA:GSGTDME InterPro:IPR024647
Pfam:PF12254 TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891
RefSeq:NP_001255108.1 ProteinModelPortal:C7IVS4 SMR:C7IVS4
STRING:C7IVS4 PaxDb:C7IVS4 EnsemblMetazoa:Y47D3A.29b GeneID:176544
KEGG:cel:CELE_Y47D3A.29 CTD:176544 WormBase:Y47D3A.29b
ArrayExpress:C7IVS4 Uniprot:C7IVS4
Length = 1456
Score = 327 (120.2 bits), Expect = 6.3e-35, Sum P(4) = 6.3e-35
Identities = 122/399 (30%), Positives = 191/399 (47%)
Query: 599 EKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTT 658
+K +D RQ+ALK++ANS+YG G + +++ VT+ GR+++ H+K LVE
Sbjct: 905 KKKQMDIRQMALKLTANSMYGCLGFQYSRFYAKPLAALVTAKGREILMHSKDLVEKM--- 961
Query: 659 VGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPY 718
GY V+YGDTDS+M+ + AA KLG E ++ + ++L+ + V+
Sbjct: 962 --GYS----VVYGDTDSIMINTNSVDLVAAKKLGNEIKKAVNKCH-RLLELDLDGVFKRM 1014
Query: 719 LLISKKRYAGLYWTNPE-KFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAV 777
LL+ KK+YA L NP+ K + + KG++ VRRD L K T + KIL D +
Sbjct: 1015 LLLKKKKYAALT-INPDTKVEAKELKGLDIVRRDWSQLAKETGTAVVDKIL-DASLTR-- 1070
Query: 778 QYVKSTISDLLMN---RMD-----LSLLVITKGLTKTGDDY-EVKA-AHVELAERMRKRD 827
+ S+I DLL ++D L + I+K LT+ + Y +VKA H +A+R+ K
Sbjct: 1071 DEMVSSIDDLLREIRAKLDSGTVPLEMFQISKQLTRNPEQYADVKAQCHAAVAQRLNKSG 1130
Query: 828 AATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENN-IPIDTHYYLENQISKPLLRIF 886
+ D V YVI + A +R+ + EN+ + ID YYL QI + R+
Sbjct: 1131 KFNLRH-NDIVEYVICEDGTDNPATQRAYHRTEMAENSALKIDLLYYLAQQIHPVVSRLV 1189
Query: 887 EPILKNAS---KELLSGDHT---RSISISTPSNSGIMKFAKRQLSCIGCKALISNGTL-- 938
EPI + + E L D T R+ + + A Q + C+ + L
Sbjct: 1190 EPIEETDAVRIAENLGLDSTNYRRAAAAQASQRAAEEDCAWHQENYDLCEGIHVICPLDG 1249
Query: 939 CSHCKGREAELYCKTVSQVQELEVLFGRLWTQCQECQGS 977
C H C T + L L++ C +CQGS
Sbjct: 1250 CGHSNVIRETFDCVTDASSPRL------LFSGCAQCQGS 1282
Score = 143 (55.4 bits), Expect = 6.3e-35, Sum P(4) = 6.3e-35
Identities = 42/138 (30%), Positives = 73/138 (52%)
Query: 430 DAYLPQRLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNV- 488
D L R++ +L + Y++++++ G S + G++ + LL ++ +L+ P+
Sbjct: 733 DLLLSLRIVVRLNALPLYIQISQIVGGIASRTMMGGRAERNEYLLLHAFEKADLIAPDKY 792
Query: 489 -------KQAGSEQGT--------YEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNL 533
K+ S++G Y G VLE + G YE I LDF SLYPSI+ YN+
Sbjct: 793 NSSESKKKKEESQEGDEKKSGKAQYSGGLVLEPKKGLYETLILLLDFNSLYPSIIQEYNI 852
Query: 534 CYSTLVTPEDA-RKLNLP 550
CY+TL +D+ +L++P
Sbjct: 853 CYTTLEYSKDSDEQLSVP 870
Score = 52 (23.4 bits), Expect = 6.3e-35, Sum P(4) = 6.3e-35
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 236 TYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAKTLSYCQLEFD 281
T+ ++V R +I+ +G WIE+ K AKT S C+ EF+
Sbjct: 457 TFNTSVTPLERLLIEKKFMGPGWIELYNYSDPK-AKT-SNCKYEFE 500
Score = 47 (21.6 bits), Expect = 6.3e-35, Sum P(4) = 6.3e-35
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 360 VMSFETERDVLLAWRDFIREVDPDVMIGYNI 390
V S E+ +L + I E +PD+++G+++
Sbjct: 595 VKSVANEKALLTLFLAMINEDEPDMIVGHDL 625
Score = 44 (20.5 bits), Expect = 1.5e-24, Sum P(3) = 1.5e-24
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 368 DVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK-EDVHHSIISDLQNGNAETRRRLAVY 426
+ L+ DF + P ++ YNIC L Y + E + +D++ R+L V
Sbjct: 831 ETLILLLDF-NSLYPSIIQEYNICYTTLEYSKDSDEQLSVPQSTDIEGVLPREIRKL-VE 888
Query: 427 CLKD 430
C +D
Sbjct: 889 CRRD 892
>ZFIN|ZDB-GENE-030114-9 [details] [associations]
symbol:pola1 "polymerase (DNA directed), alpha 1"
species:7955 "Danio rerio" [GO:0001882 "nucleoside binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA;IBA] [GO:0006260 "DNA replication"
evidence=IEA;IBA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=IBA] [GO:0090305 "nucleic
acid phosphodiester bond hydrolysis" evidence=IBA] [GO:0005658
"alpha DNA polymerase:primase complex" evidence=IBA] [GO:0008408
"3'-5' exonuclease activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
ZFIN:ZDB-GENE-030114-9 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006303
GO:GO:0003887 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0005658 InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
GeneTree:ENSGT00550000074891 EMBL:BX470095 IPI:IPI00898449
Ensembl:ENSDART00000128595 ArrayExpress:E7FB68 Bgee:E7FB68
Uniprot:E7FB68
Length = 1468
Score = 321 (118.1 bits), Expect = 9.0e-35, Sum P(5) = 9.0e-35
Identities = 95/301 (31%), Positives = 153/301 (50%)
Query: 604 DGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYE 663
D RQ ALK++ANS+YG G + + +++ VT GR+++ HTK++V+
Sbjct: 950 DIRQKALKLTANSMYGCLGFSFSRFYAKPLAALVTHKGREILMHTKEMVQ---------R 1000
Query: 664 HNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLLISK 723
N EVIYGDTDS+M+ +E KLG + ++ + K ++++ + V+ LL+ K
Sbjct: 1001 MNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLY-KLLEIDIDGVFKSLLLLKK 1059
Query: 724 KRYAGLYWTNPE---KFD-KMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQY 779
K+YA L P+ K+ K + KG++ VRRD C L K + +IL D++ ++
Sbjct: 1060 KKYAALM-VEPQGDGKYTTKQELKGLDIVRRDWCDLAKECGNYVIGQILSDQNRDTIIEN 1118
Query: 780 VKS---TISDLLMN-RMDLSLLVITKGLTKTGDDYEVKAA--HVELAERMRKRDAATAPN 833
++ I + + N + L++ I K LTK DY K + HV +A + +
Sbjct: 1119 IQKHLIEIGEKVANGNIPLNMFEIHKSLTKEPQDYPDKKSLPHVHVALWINSQGGKKV-K 1177
Query: 834 VGDRVPYVIIKAAKGAKAYERSEDPIYVLEN-----NIPIDTHYYLENQISKPLLRIFEP 888
GD V YVI + A +R+ Y LE + +DT YYL Q+ + RI EP
Sbjct: 1178 AGDTVSYVICQDGSNLAASQRA----YTLEQLQKQPGLNLDTQYYLSQQVHPVVGRICEP 1233
Query: 889 I 889
I
Sbjct: 1234 I 1234
Score = 122 (48.0 bits), Expect = 9.0e-35, Sum P(5) = 9.0e-35
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 494 EQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTL 538
++ Y G VL+ + GFY+K I LDF SLYPSI+ +N+C++T+
Sbjct: 843 KKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTV 887
Score = 83 (34.3 bits), Expect = 9.0e-35, Sum P(5) = 9.0e-35
Identities = 46/192 (23%), Positives = 87/192 (45%)
Query: 247 FMIDCNIVGGNWIEVPVGKYRKTAKTLSYCQLEFDCLYSDIISRHPEGEFSKMAPFRILS 306
F+++ I G W++V + + +S+C++E SD+IS + S P ++S
Sbjct: 496 FLLNRKIRGPCWLDVTTPQLSN--QPISWCKVEAVAQKSDLIS--VVKDLSP-PPLVVMS 550
Query: 307 FDIECAGRKGHFPEPTHDPVIQVANLV--TLQGEKQP----FIRNVMTLKS---CA-PIV 356
++ P+ + ++ +A LV T +K P F + + C P
Sbjct: 551 ISLKTVQN----PKTHQNEIVSIAALVHHTFPLDKAPPRPPFQTHFCVVSKPNDCVFPYD 606
Query: 357 GVDVMSFE--------TERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEKEDV---- 404
D + + TER +L + + ++DPDV++G++I FDL L+++ +V
Sbjct: 607 FKDAVRKKNGIVEIAGTERALLGFFLAKMHKIDPDVLVGHDIFGFDLEVLLQRINVCKVP 666
Query: 405 HHSIISDLQNGN 416
H S I L+ N
Sbjct: 667 HWSKIGRLRRAN 678
Score = 53 (23.7 bits), Expect = 8.3e-07, Sum P(5) = 8.3e-07
Identities = 33/115 (28%), Positives = 52/115 (45%)
Query: 853 ERSEDPIYVLENNI-PIDTHYYLENQIS-KPLLRIFEPILKNASKELLSGDHTRSISIST 910
E E P LE I P + +E + K L++ EP L N L +++ ++
Sbjct: 904 EIPELPDQSLEMGILPKEIRKLVERRRQVKQLMK--EPDL-NPDLYLQYDIRQKALKLTA 960
Query: 911 PSNSGIMKFAKRQLSCIGCKALISNGTLCSHCKGREAELYCKTVSQVQELEVLFG 965
S G + F+ S K L + L +H KGRE ++ K + Q LEV++G
Sbjct: 961 NSMYGCLGFS---FSRFYAKPLAA---LVTH-KGREILMHTKEMVQRMNLEVIYG 1008
Score = 43 (20.2 bits), Expect = 9.0e-35, Sum P(5) = 9.0e-35
Identities = 16/70 (22%), Positives = 38/70 (54%)
Query: 425 VYCLKDAYLPQRLLDKLMFIFNYVEMA-RVTGVP---ISFLLSRGQSIKVLSQLLRKAKQ 480
+Y L+ ++ +L+ ++M N + +A ++T + +S L G+S + LL +
Sbjct: 748 LYLLELTWMDAKLILQIMCELNVLPLALQITNIAGNVMSRTLMGGRSERNEYLLLHAFHE 807
Query: 481 KNLVIPNVKQ 490
++ ++P+ KQ
Sbjct: 808 RDFIVPD-KQ 816
Score = 42 (19.8 bits), Expect = 9.0e-35, Sum P(5) = 9.0e-35
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 53 DEESLILRDIEQRQDFASRLAKWARPPLSSGYVSQCQSIMFQQLDIDYVIGDSNRE 108
DEE + + +RQD W +GYV + I ++LD D +G +++
Sbjct: 70 DEEQYS-KIVRERQD-----DDWIIDDDGTGYVEDGREIFDEELDDD-ALGPKSKQ 118
>FB|FBgn0259113 [details] [associations]
symbol:DNApol-alpha180 "DNA polymerase alpha 180kD"
species:7227 "Drosophila melanogaster" [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=ISS;NAS;IDA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS;NAS;IDA]
[GO:0006260 "DNA replication" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=NAS] [GO:0008296 "3'-5'-exodeoxyribonuclease
activity" evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0001882 "nucleoside binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
EMBL:AE014297 GO:GO:0022008 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0051539
GO:GO:0001882 GO:GO:0004527 GO:GO:0090305 SUPFAM:SSF53098
GO:GO:0003887 KO:K02320 eggNOG:COG0417 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0005658 OMA:GSGTDME InterPro:IPR024647
Pfam:PF12254 TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891
EMBL:D90310 EMBL:S48157 EMBL:AB011813 EMBL:AY070529 PIR:S28079
RefSeq:NP_536736.2 UniGene:Dm.1592 ProteinModelPortal:P26019
SMR:P26019 DIP:DIP-23937N IntAct:P26019 MINT:MINT-206832
STRING:P26019 PaxDb:P26019 EnsemblMetazoa:FBtr0084115 GeneID:42553
KEGG:dme:Dmel_CG6349 CTD:42553 FlyBase:FBgn0259113
OrthoDB:EOG4MPG50 PhylomeDB:P26019 ChEMBL:CHEMBL6039
GenomeRNAi:42553 NextBio:829396 Bgee:P26019 GermOnline:CG6349
Uniprot:P26019
Length = 1488
Score = 386 (140.9 bits), Expect = 6.4e-32, Sum P(2) = 6.4e-32
Identities = 143/542 (26%), Positives = 257/542 (47%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
E+ +V+ + ++ + +++ ++YL RL+ +L + +++ + G ++
Sbjct: 741 ERMEVNADDLLEMYEKGESITKLISLTMQDNSYL-LRLMCELNIMPLALQITNICGNTMT 799
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQ------AGSEQGT---------------Y 498
L G+S + LL +KN ++P+ K AG T Y
Sbjct: 800 RTLQGGRSERNEFLLLHAFHEKNYIVPDKKPVSKRSGAGDTDATLSGADATMQTKKKAAY 859
Query: 499 EGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLVTPEDARKLNLPPECVNKTP 558
G VLE G YEK + +DF SLYPSI+ YN+C++T+ P DA +L P+ +KT
Sbjct: 860 AGGLVLEPMRGLYEKYVLLMDFNSLYPSIIQEYNICFTTVQQPVDADELPTLPD--SKTE 917
Query: 559 SGETFVKSNLQKGXXXXXXXXXXXXXXXXXXXXXXXXXPLEKAVLDGRQLALKISANSVY 618
G + L++ P + RQ+ALK++ANS+Y
Sbjct: 918 PG--ILPLQLKR--------LVESRKEVKKLMAAPDLSPELQMQYHIRQMALKLTANSMY 967
Query: 619 GFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMV 678
G G + +++ VT GR+++ +T++LV+ + N +V+YGDTDS+M+
Sbjct: 968 GCLGFAHSRFFAQHLAALVTHKGREILTNTQQLVQ---------KMNYDVVYGDTDSLMI 1018
Query: 679 QFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFD 738
+ + K+G ++ + K ++L+ + V+ LL+ KK+YA + + K +
Sbjct: 1019 NTNITDYDQVYKIGHNIKQSVNKLY-KQLELDIDGVFGCLLLLKKKKYAAIKLSKDSKGN 1077
Query: 739 ---KMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQYVKSTI----SDLLMNR 791
+ + KG++ VRRD L + L ++L ++ + + V + + + +
Sbjct: 1078 LRREQEHKGLDIVRRDWSQLAVMVGKAVLDEVLSEKPLEEKLDAVHAQLEKIKTQIAEGV 1137
Query: 792 MDLSLLVITKGLTKTGDDYEVKAA--HVELAERMRKRDAATAPNVGDRVPYVIIKAAKGA 849
+ L L VITK LT+T +Y A+ HV++A RM R+ GD V YVI
Sbjct: 1138 VPLPLFVITKQLTRTPQEYANSASLPHVQVALRMN-RERNRRYKKGDMVDYVICLDGTTN 1196
Query: 850 KAYERSE--DPIYVLENN-IPIDTHYYLENQISKPLLRIFEPILK--NASK--ELLSGDH 902
A +R+ D + E+ + +DT+YYL +QI + R+ E +L+ +AS+ E L D
Sbjct: 1197 AAMQRAYHLDELKTSEDKKLQLDTNYYLGHQIHPVVTRMVE-VLEGTDASRIAECLGMDP 1255
Query: 903 TR 904
T+
Sbjct: 1256 TK 1257
Score = 57 (25.1 bits), Expect = 6.4e-32, Sum P(2) = 6.4e-32
Identities = 43/201 (21%), Positives = 84/201 (41%)
Query: 122 IFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANRNSKVPQFVR 181
+FG T +G SVC +V Y+ P+ D IS E ++ +F
Sbjct: 382 LFGRTADGKSVCLRVQNINRVLYL-LPRQFLLDPISK-----EPTKQKVTVADIYKEF-- 433
Query: 182 HIEMVQKRSIMYYQQQK-SQPFLKIVVALPTMVASCRGILDRGIQLDGL----GMKSFMT 236
E+ + + +++ +K ++ F + + + SC L+ + DG + +
Sbjct: 434 DSEVANQLKLEFFRSRKVTKSFAHHAIGIE-VPQSC-DYLE--VHYDGKKPLPNLSADKK 489
Query: 237 YESNV-LF-----AL-RFMIDCNIVGGNWIEVPVGKYRKTAKTLSYCQLEFDCLYSDIIS 289
Y S +F AL RF++D I G W++V G ++ + +S+C E +
Sbjct: 490 YNSIAHIFGATTNALERFLLDRKIKGPCWLQV-TG-FKVSPTPMSWCNTEVTLTEPKNVE 547
Query: 290 R-HPEGEFSKMAPFRILSFDI 309
+G+ + P +LS ++
Sbjct: 548 LVQDKGKPAPPPPLTLLSLNV 568
>RGD|1307087 [details] [associations]
symbol:Rev3l "REV3-like, polymerase (DNA directed), zeta,
catalytic subunit" species:10116 "Rattus norvegicus" [GO:0006281
"DNA repair" evidence=ISO] [GO:0016035 "zeta DNA polymerase
complex" evidence=ISO] InterPro:IPR006134 Pfam:PF00136 RGD:1307087
GO:GO:0005634 GO:GO:0005694 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985
InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000112263
OrthoDB:EOG4NVZJD GO:GO:0016035 IPI:IPI00361212 UniGene:Rn.8189
EMBL:BC086428 ProteinModelPortal:Q5RJZ4 STRING:Q5RJZ4
UCSC:RGD:1307087 InParanoid:Q5RJZ4 ArrayExpress:Q5RJZ4
Genevestigator:Q5RJZ4 Uniprot:Q5RJZ4
Length = 314
Score = 346 (126.9 bits), Expect = 2.4e-30, P = 2.4e-30
Identities = 94/306 (30%), Positives = 147/306 (48%)
Query: 708 KLEFEKVYYPYLLISKKRYAG-LYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHK 766
KL+FEKVY P +L +KKRY G +Y T +K D KGIETVRRD+C V ++ L
Sbjct: 1 KLKFEKVYLPCVLQTKKRYVGYMYETLDQKDPVFDAKGIETVRRDSCPAVSKILERSLKL 60
Query: 767 ILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAA--HVELAERMR 824
+ RDI QYV+ L+ + + + K + Y A +EL +M
Sbjct: 61 LFETRDISLIKQYVQRQCMKLVEGKASIQDFIFAKEY-RGSFSYRPGACVPALELTRKML 119
Query: 825 KRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLEN-NIPIDTHYYLENQISKPLL 883
D + P VG+RVPYVI+ G + P VL++ + ++ YY+ QI PL
Sbjct: 120 AYDRRSEPRVGERVPYVIVYGTPGLPLIQLIRRPAEVLQDPTLRLNATYYITKQILPPLA 179
Query: 884 RIFEPI---LKNASKELLSGDHTRSISIST-PSNSGIMKFAKRQLSCIGCKALISNGTLC 939
RIF I + + +EL S S S G + L C C L +G +C
Sbjct: 180 RIFSLIGIDVFSWYQELPRIQKATSSSRSDLEGRKGTISQYFTTLHCPVCDGLTQHG-IC 238
Query: 940 SHCKGREAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQ 999
S C+ + + +++ELE +L C+ C GS + + C S +CP+ ++ +
Sbjct: 239 SQCRSQPQHVAIILNQEIRELERQQEQLVKICRNCTGSFDRHIPCVSLNCPVLFKLSRVN 298
Query: 1000 KDMAEA 1005
+++++A
Sbjct: 299 RELSKA 304
>UNIPROTKB|I3LIH4 [details] [associations]
symbol:POLA1 "DNA polymerase" species:9823 "Sus scrofa"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0003887 Gene3D:3.90.1600.10 InterPro:IPR023211
TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891
Ensembl:ENSSSCT00000027952 OMA:ESHETTT Uniprot:I3LIH4
Length = 497
Score = 271 (100.5 bits), Expect = 5.7e-29, Sum P(3) = 5.7e-29
Identities = 76/248 (30%), Positives = 132/248 (53%)
Query: 604 DGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYE 663
D RQ ALK++ANS+YG G + + +++ VT GR+++ HTK++V+ +
Sbjct: 255 DIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQ---------K 305
Query: 664 HNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLLISK 723
N EVIYGDTDS+M+ ++E KLG + ++ + K ++++ + ++ LL+ K
Sbjct: 306 MNLEVIYGDTDSIMINTNSNSLEEVFKLGNKVKSEVNKLY-KLLEIDIDGIFKSLLLLKK 364
Query: 724 KRYAGLYW--TNPEKF-DKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQYV 780
K+YA L T+ + K + KG++ +RRD C L K+ + +IL D+ V+ +
Sbjct: 365 KKYAALVVEPTSDGNYITKQEVKGLDIIRRDWCDLAKDTGNFVIGQILSDQSRDTIVENI 424
Query: 781 KSTISDLLMNRMDLSLLV----ITKGLTKTGDDYEVKAA--HVELAERMRKRDAATAPNV 834
+ + ++ N ++ S+ V I K LTK DY K + HV +A + +
Sbjct: 425 QKRLIEIGENVLNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQGGRKV-KA 483
Query: 835 GDRVPYVI 842
GD V Y+I
Sbjct: 484 GDTVSYII 491
Score = 128 (50.1 bits), Expect = 5.7e-29, Sum P(3) = 5.7e-29
Identities = 22/47 (46%), Positives = 33/47 (70%)
Query: 492 GSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTL 538
G ++ Y G VL+ + GFY+K I LDF SLYPSI+ +N+C++T+
Sbjct: 145 GRKKAAYSGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTV 191
Score = 50 (22.7 bits), Expect = 6.0e-05, Sum P(3) = 6.0e-05
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 943 KGREAELYCKTVSQVQELEVLFG 965
KGRE ++ K + Q LEV++G
Sbjct: 291 KGREILMHTKEMVQKMNLEVIYG 313
Score = 43 (20.2 bits), Expect = 5.7e-29, Sum P(3) = 5.7e-29
Identities = 22/106 (20%), Positives = 49/106 (46%)
Query: 391 CK-FDLPYLIEKEDVHHSIISDLQN-GNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYV 448
CK + L L++ ++ ++N N + +Y L+ + + + ++M N +
Sbjct: 15 CKSYHLSELVQHILKTERVVIPMENVRNMYSESSHLLYLLEHTWKDAKFILQIMCELNVL 74
Query: 449 EMA-RVTGVP---ISFLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQ 490
+A ++T + +S L G+S + LL + N ++P+ KQ
Sbjct: 75 PLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPD-KQ 119
>GENEDB_PFALCIPARUM|PF10_0362 [details] [associations]
symbol:PF10_0362 "DNA polymerase zeta catalytic
subunit, putative" species:5833 "Plasmodium falciparum" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0016035
"zeta DNA polymerase complex" evidence=ISS] InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR008973 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF49562
SUPFAM:SSF53098 EMBL:AE014185 GO:GO:0003887 KO:K02350 GO:GO:0016035
RefSeq:XP_001347646.1 ProteinModelPortal:Q8IJ38
EnsemblProtists:PF10_0362:mRNA GeneID:810519 KEGG:pfa:PF10_0362
EuPathDB:PlasmoDB:PF3D7_1037000 HOGENOM:HOG000284524
ProtClustDB:CLSZ2446634 Uniprot:Q8IJ38
Length = 2240
Score = 248 (92.4 bits), Expect = 5.7e-29, Sum P(7) = 5.7e-29
Identities = 64/222 (28%), Positives = 112/222 (50%)
Query: 544 ARKLNLPPECVNKTPSGETFVKSNLQKGXXXXXXXXXXXXXXXXXXXXXXXXXPLEKAVL 603
+R NL E + T + +VK + +KG + K L
Sbjct: 1315 SRIKNLKSEDIIITSNNTIYVKKHKRKGICPLFLEDILKTRIMLKRCMGMYEERVNKK-L 1373
Query: 604 DGRQLALKISANSVYGFTGATV-GQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGY 662
+ R LK+ N G+ GA G++PC++IS S+ S GR + + +++ + V
Sbjct: 1374 NERMGKLKLILNVATGYIGANFSGRMPCVDISESIISIGRNFLLFIIEYIKENYKFV--- 1430
Query: 663 EHNAEVIYGDTDSV-MVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLLI 721
+++YGDTDS+ ++ ++++ KL E + I+ P+ L FEK+Y P LL+
Sbjct: 1431 ----KILYGDTDSLFLLNETTDDIQSSFKLAYEILNSINNILPLPMYLNFEKIYCPSLLL 1486
Query: 722 SKKRYAGLYWTNPEKFDK-MDTKGIETVRRDNCLLVKNLVTE 762
+KKRY G + N + + +D KG+E++R D C+LVKN++ +
Sbjct: 1487 TKKRYFGFSFKNENQDNPILDLKGVESIRSDQCILVKNILIQ 1528
Score = 162 (62.1 bits), Expect = 5.7e-29, Sum P(7) = 5.7e-29
Identities = 46/178 (25%), Positives = 88/178 (49%)
Query: 398 LIEKEDVHHSIISDLQNGNAE-TRRRLAV-YCLKDAYLPQRLLDKLMFIFNYVEMARVTG 455
++ K+ +++ + +D+ + R + + + L+ Y + DK+ F+ + +
Sbjct: 981 VVNKDIINNDLWNDMDEEHIYFPYRHITIKHYLRKVYFILLIYDKICFLKRKMNFCKYIH 1040
Query: 456 VPISFLLSRGQSIKVLSQLLRKAKQKNLVI--PNVKQAGSEQGTYEGATVLEARAGFYEK 513
V + L++RG + S LL+ + + N V+ P+ K+ ++ +L+ ++
Sbjct: 1041 VDLLSLINRGSQYIIESFLLKMSIKYNYVLYSPSNKEIFDQRPILHTPLILQPKSSINFF 1100
Query: 514 PIATLDFASLYPSIMMAYNLCYST-LVTPEDARKLNLPPECVNKTPSGETFVKSNLQK 570
P+ DF SLYPSI++A+N+CYST L T RKLN E N E S ++K
Sbjct: 1101 PLLVFDFQSLYPSILIAFNICYSTCLGTITLKRKLNQMDEEKNNEKKDENIEGSLMEK 1158
Score = 68 (29.0 bits), Expect = 5.7e-29, Sum P(7) = 5.7e-29
Identities = 39/182 (21%), Positives = 73/182 (40%)
Query: 119 IIRIFGVTREGHSVCCKVHG---------------FEPYFYISCPQGMGPDDIS-HFHQI 162
II+I G++ G VC +H F +++I + D +
Sbjct: 46 IIQILGLSLLGQRVCLYIHDLMYVYLIVYFILFYCFISFYFIFFHSPISDDKLEIELCSF 105
Query: 163 LEGRMREANRNSKVPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDR 222
LE +A ++ V +IE V+++ I Y ++ FLKI P + +L +
Sbjct: 106 LEEEYGKARKDPSNNVCVYNIERVKRKGIYGYNEE-CDDFLKISFLYPNTINYFASLLKK 164
Query: 223 GIQLDGLGMKSFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKY-RKTAKTLSYCQLEFD 281
+ + + YE ++ + L F+ NI G + I + Y RK ++ F+
Sbjct: 165 KL----FKKRIWDLYEVHINYMLHFLCMKNIYGCSEIYIDKNIYFRKEFVN----EINFE 216
Query: 282 CL 283
C+
Sbjct: 217 CI 218
Score = 52 (23.4 bits), Expect = 5.7e-29, Sum P(7) = 5.7e-29
Identities = 13/57 (22%), Positives = 29/57 (50%)
Query: 956 QVQELEVLFGRLWTQCQECQGSLHQDVLCT-SRDCPIFYRRKKAQKDMAEAKLQLDR 1011
++ + + + +L C C S + + C S C IF++R Q+++ + K ++R
Sbjct: 2182 EINKSQNMLKKLNKICLMCANSEMEALACNYSVHCKIFFKRINLQENILKNKDSINR 2238
Score = 46 (21.3 bits), Expect = 5.7e-29, Sum P(7) = 5.7e-29
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 836 DRVPYVIIKAAKGAKAYERSEDPIYV 861
++VPY+ K K K Y P ++
Sbjct: 1846 EKVPYIFTKKLKDDKIYSSVSHPHFI 1871
Score = 42 (19.8 bits), Expect = 5.7e-29, Sum P(7) = 5.7e-29
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 868 IDTHYYLENQISKPLLRIFE 887
I+ YY++N I PL R+ +
Sbjct: 2040 INYDYYIQNLIIPPLKRMLD 2059
Score = 40 (19.1 bits), Expect = 2.5e-17, Sum P(6) = 2.5e-17
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 375 DFIREVDPDVMIGYNIC 391
DF + + P ++I +NIC
Sbjct: 1106 DF-QSLYPSILIAFNIC 1121
Score = 40 (19.1 bits), Expect = 1.1e-07, Sum P(6) = 1.1e-07
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 632 EISSSVTSYGRQMIEH--TKKLVEDKFTTVGGYEHNAEVIY 670
+ +S+ +Y ++ + + TKKL +DK + + H IY
Sbjct: 1836 DFPNSIITY-KEKVPYIFTKKLKDDKIYSSVSHPHFIRGIY 1875
Score = 37 (18.1 bits), Expect = 5.7e-29, Sum P(7) = 5.7e-29
Identities = 9/44 (20%), Positives = 23/44 (52%)
Query: 358 VDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
V++ E ER+++ + I P ++ Y K+++ Y+ ++
Sbjct: 846 VNICIVENERELIQKLINKILFYSPLSIVSYENDKYNINYINQR 889
>UNIPROTKB|Q8IJ38 [details] [associations]
symbol:PF10_0362 "DNA polymerase" species:36329 "Plasmodium
falciparum 3D7" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0016035 "zeta DNA polymerase complex"
evidence=ISS] InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR008973 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 PROSITE:PS00116 SMART:SM00486 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF49562 SUPFAM:SSF53098
EMBL:AE014185 GO:GO:0003887 KO:K02350 GO:GO:0016035
RefSeq:XP_001347646.1 ProteinModelPortal:Q8IJ38
EnsemblProtists:PF10_0362:mRNA GeneID:810519 KEGG:pfa:PF10_0362
EuPathDB:PlasmoDB:PF3D7_1037000 HOGENOM:HOG000284524
ProtClustDB:CLSZ2446634 Uniprot:Q8IJ38
Length = 2240
Score = 248 (92.4 bits), Expect = 5.7e-29, Sum P(7) = 5.7e-29
Identities = 64/222 (28%), Positives = 112/222 (50%)
Query: 544 ARKLNLPPECVNKTPSGETFVKSNLQKGXXXXXXXXXXXXXXXXXXXXXXXXXPLEKAVL 603
+R NL E + T + +VK + +KG + K L
Sbjct: 1315 SRIKNLKSEDIIITSNNTIYVKKHKRKGICPLFLEDILKTRIMLKRCMGMYEERVNKK-L 1373
Query: 604 DGRQLALKISANSVYGFTGATV-GQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGY 662
+ R LK+ N G+ GA G++PC++IS S+ S GR + + +++ + V
Sbjct: 1374 NERMGKLKLILNVATGYIGANFSGRMPCVDISESIISIGRNFLLFIIEYIKENYKFV--- 1430
Query: 663 EHNAEVIYGDTDSV-MVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLLI 721
+++YGDTDS+ ++ ++++ KL E + I+ P+ L FEK+Y P LL+
Sbjct: 1431 ----KILYGDTDSLFLLNETTDDIQSSFKLAYEILNSINNILPLPMYLNFEKIYCPSLLL 1486
Query: 722 SKKRYAGLYWTNPEKFDK-MDTKGIETVRRDNCLLVKNLVTE 762
+KKRY G + N + + +D KG+E++R D C+LVKN++ +
Sbjct: 1487 TKKRYFGFSFKNENQDNPILDLKGVESIRSDQCILVKNILIQ 1528
Score = 162 (62.1 bits), Expect = 5.7e-29, Sum P(7) = 5.7e-29
Identities = 46/178 (25%), Positives = 88/178 (49%)
Query: 398 LIEKEDVHHSIISDLQNGNAE-TRRRLAV-YCLKDAYLPQRLLDKLMFIFNYVEMARVTG 455
++ K+ +++ + +D+ + R + + + L+ Y + DK+ F+ + +
Sbjct: 981 VVNKDIINNDLWNDMDEEHIYFPYRHITIKHYLRKVYFILLIYDKICFLKRKMNFCKYIH 1040
Query: 456 VPISFLLSRGQSIKVLSQLLRKAKQKNLVI--PNVKQAGSEQGTYEGATVLEARAGFYEK 513
V + L++RG + S LL+ + + N V+ P+ K+ ++ +L+ ++
Sbjct: 1041 VDLLSLINRGSQYIIESFLLKMSIKYNYVLYSPSNKEIFDQRPILHTPLILQPKSSINFF 1100
Query: 514 PIATLDFASLYPSIMMAYNLCYST-LVTPEDARKLNLPPECVNKTPSGETFVKSNLQK 570
P+ DF SLYPSI++A+N+CYST L T RKLN E N E S ++K
Sbjct: 1101 PLLVFDFQSLYPSILIAFNICYSTCLGTITLKRKLNQMDEEKNNEKKDENIEGSLMEK 1158
Score = 68 (29.0 bits), Expect = 5.7e-29, Sum P(7) = 5.7e-29
Identities = 39/182 (21%), Positives = 73/182 (40%)
Query: 119 IIRIFGVTREGHSVCCKVHG---------------FEPYFYISCPQGMGPDDIS-HFHQI 162
II+I G++ G VC +H F +++I + D +
Sbjct: 46 IIQILGLSLLGQRVCLYIHDLMYVYLIVYFILFYCFISFYFIFFHSPISDDKLEIELCSF 105
Query: 163 LEGRMREANRNSKVPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDR 222
LE +A ++ V +IE V+++ I Y ++ FLKI P + +L +
Sbjct: 106 LEEEYGKARKDPSNNVCVYNIERVKRKGIYGYNEE-CDDFLKISFLYPNTINYFASLLKK 164
Query: 223 GIQLDGLGMKSFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKY-RKTAKTLSYCQLEFD 281
+ + + YE ++ + L F+ NI G + I + Y RK ++ F+
Sbjct: 165 KL----FKKRIWDLYEVHINYMLHFLCMKNIYGCSEIYIDKNIYFRKEFVN----EINFE 216
Query: 282 CL 283
C+
Sbjct: 217 CI 218
Score = 52 (23.4 bits), Expect = 5.7e-29, Sum P(7) = 5.7e-29
Identities = 13/57 (22%), Positives = 29/57 (50%)
Query: 956 QVQELEVLFGRLWTQCQECQGSLHQDVLCT-SRDCPIFYRRKKAQKDMAEAKLQLDR 1011
++ + + + +L C C S + + C S C IF++R Q+++ + K ++R
Sbjct: 2182 EINKSQNMLKKLNKICLMCANSEMEALACNYSVHCKIFFKRINLQENILKNKDSINR 2238
Score = 46 (21.3 bits), Expect = 5.7e-29, Sum P(7) = 5.7e-29
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 836 DRVPYVIIKAAKGAKAYERSEDPIYV 861
++VPY+ K K K Y P ++
Sbjct: 1846 EKVPYIFTKKLKDDKIYSSVSHPHFI 1871
Score = 42 (19.8 bits), Expect = 5.7e-29, Sum P(7) = 5.7e-29
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 868 IDTHYYLENQISKPLLRIFE 887
I+ YY++N I PL R+ +
Sbjct: 2040 INYDYYIQNLIIPPLKRMLD 2059
Score = 40 (19.1 bits), Expect = 2.5e-17, Sum P(6) = 2.5e-17
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 375 DFIREVDPDVMIGYNIC 391
DF + + P ++I +NIC
Sbjct: 1106 DF-QSLYPSILIAFNIC 1121
Score = 40 (19.1 bits), Expect = 1.1e-07, Sum P(6) = 1.1e-07
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 632 EISSSVTSYGRQMIEH--TKKLVEDKFTTVGGYEHNAEVIY 670
+ +S+ +Y ++ + + TKKL +DK + + H IY
Sbjct: 1836 DFPNSIITY-KEKVPYIFTKKLKDDKIYSSVSHPHFIRGIY 1875
Score = 37 (18.1 bits), Expect = 5.7e-29, Sum P(7) = 5.7e-29
Identities = 9/44 (20%), Positives = 23/44 (52%)
Query: 358 VDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
V++ E ER+++ + I P ++ Y K+++ Y+ ++
Sbjct: 846 VNICIVENERELIQKLINKILFYSPLSIVSYENDKYNINYINQR 889
>UNIPROTKB|Q7RBM5 [details] [associations]
symbol:PY06115 "DNA polymerase" species:73239 "Plasmodium
yoelii yoelii" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005658
"alpha DNA polymerase:primase complex" evidence=IBA] [GO:0006260
"DNA replication" evidence=IBA] [GO:0006303 "double-strand break
repair via nonhomologous end joining" evidence=IBA] [GO:0008408
"3'-5' exonuclease activity" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0006297 "nucleotide-excision repair,
DNA gap filling" evidence=IBA] InterPro:IPR004578
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006303 GO:GO:0003887 KO:K02320
eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0005658 TIGRFAMs:TIGR00592 EMBL:AABL01002033
RefSeq:XP_726706.1 ProteinModelPortal:Q7RBM5 STRING:Q7RBM5
GeneID:3792046 KEGG:pyo:PY06115 EuPathDB:PlasmoDB:PY06115
Uniprot:Q7RBM5
Length = 906
Score = 213 (80.0 bits), Expect = 6.8e-29, Sum P(3) = 6.8e-29
Identities = 62/207 (29%), Positives = 111/207 (53%)
Query: 599 EKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTT 658
+K +L + L++K+ +NS+YG G T + I+S +T GR +++HTK VE +F
Sbjct: 241 KKELLLVQSLSIKLISNSIYGCLGNTHNRFYAKYIASYITQKGRNLLQHTKFKVEKEF-- 298
Query: 659 VGGYEHNAEVIYGDTDSVMVQFGVPTVEA-----AMKLGREAADYISGTFIKPIKLEFEK 713
N +V+YGDTDS+M+ G+ + + ++KL + I+ + K ++L+ E
Sbjct: 299 ------NLKVVYGDTDSIMIDTGIKSSDVNNYKESLKLAHTIKNNINKNY-KKLELDLEC 351
Query: 714 VYYPYLLISKKRYAGLYWTNPE--KFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDR 771
++ LL+ KK+YA +P K++ + KGI ++RD C + K + E L I ++
Sbjct: 352 IFSKLLLLKKKKYACAKVIDPNLGKYE-YEMKGINFIKRDFCKISKLIGNEMLRIIFSNK 410
Query: 772 DI-PGAVQYVKSTIS--DLLMNRMDLS 795
+ P +++S D L + DLS
Sbjct: 411 EYKPSQPNSSNTSLSHTDDLSIQNDLS 437
Score = 134 (52.2 bits), Expect = 6.8e-29, Sum P(3) = 6.8e-29
Identities = 31/78 (39%), Positives = 41/78 (52%)
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLD 519
FLL K ++ L+ K K K I N Y G VLE G+Y+ + LD
Sbjct: 81 FLLHEYHKKKYITPLVAKKKPK---IENDSNKSKNTAKYLGGLVLEPLCGYYDTYVLYLD 137
Query: 520 FASLYPSIMMAYNLCYST 537
F SLYPSI++ YN+C+ST
Sbjct: 138 FNSLYPSIIIEYNICFST 155
Score = 115 (45.5 bits), Expect = 6.8e-29, Sum P(3) = 6.8e-29
Identities = 37/134 (27%), Positives = 63/134 (47%)
Query: 769 VDRDIPGAV-QYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAA--HVELAERMRK 825
+ D+ + +Y++S + + DL VITK LTK ++Y+ K + HV +AERM K
Sbjct: 432 IQNDLSEQIHEYLRSVYQRIQNDEFDLEHYVITKKLTKNVNEYQEKNSLGHVLVAERMIK 491
Query: 826 RDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIY----------VLENNIPIDTHYYLE 875
D V + Y + + K Y + + + + + N+ ID YY+
Sbjct: 492 -DGYNVC-VNKEIQYCVCRNEDALKFYNKGNEKLNSSLCCFSISEIKKYNLKIDKDYYIR 549
Query: 876 NQISKPLLRIFEPI 889
NQI P+ R+ + I
Sbjct: 550 NQILLPINRLCQYI 563
Score = 48 (22.0 bits), Expect = 5.1e-20, Sum P(3) = 5.1e-20
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 332 LVTLQGEKQPFIRNVMTL-KSCAPIVGVDVMS-FETERDVLLAWRDFIREVDPDVMIGYN 389
+ L +K+P I N K+ A +G V+ D + + DF + P ++I YN
Sbjct: 92 ITPLVAKKKPKIENDSNKSKNTAKYLGGLVLEPLCGYYDTYVLYLDF-NSLYPSIIIEYN 150
Query: 390 IC 391
IC
Sbjct: 151 IC 152
Score = 42 (19.8 bits), Expect = 2.1e-19, Sum P(3) = 2.1e-19
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 259 IEVPVGKYRKTAKTLSYCQLEFDCLYSDIISRHPEGEFSKMAPFRILSFDI 309
IE K + TAK L LE C Y D + + F+ + P I+ ++I
Sbjct: 103 IENDSNKSKNTAKYLGGLVLEPLCGYYDTYVLYLD--FNSLYPSIIIEYNI 151
>UNIPROTKB|A8IXV5 [details] [associations]
symbol:CHLREDRAFT_172920 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000084 "S phase of mitotic cell
cycle" evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
Pfam:PF00136 PRINTS:PR00106 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0043137 GO:GO:0003887 GO:GO:0006297 eggNOG:COG0417
GO:GO:0045004 GO:GO:0006287 GO:GO:0043625 EMBL:DS496126
RefSeq:XP_001693242.1 EnsemblPlants:EDP03268 GeneID:5718970
KEGG:cre:CHLREDRAFT_172920 ProtClustDB:CLSN2921640 Uniprot:A8IXV5
Length = 350
Score = 271 (100.5 bits), Expect = 3.4e-27, Sum P(2) = 3.4e-27
Identities = 67/187 (35%), Positives = 96/187 (51%)
Query: 437 LLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGS-EQ 495
L+++L + +EMARVTG+ ++ +L Q IK S L R A ++N ++ ++AGS +
Sbjct: 104 LMERLATLPEMLEMARVTGLTLTQVLYNAQMIKTWSLLHRNAHRQNYIVGGAREAGSLTE 163
Query: 496 GTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLVTPEDARKLNLPPECVN 555
Y + AG Y P+ATLDFASLYPS+ A+NLCY+TLV P+D R L + P
Sbjct: 164 SPYLLHPIENKTAGLYRGPVATLDFASLYPSLFRAHNLCYTTLVHPDDVR-LGILPT--- 219
Query: 556 KTPSGETFVKSNLQKGXXXXXXXXXXXXXXXXXXXXXXXXXPLEKAVLDGRQLALKISAN 615
+ + L VLDGRQ ALK++AN
Sbjct: 220 --------ILAALMTARAATRAAIKALGGGGSGAATDLHAAAAAAMVLDGRQKALKVTAN 271
Query: 616 SVYGFTG 622
++YGFTG
Sbjct: 272 ALYGFTG 278
Score = 73 (30.8 bits), Expect = 3.4e-27, Sum P(2) = 3.4e-27
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 690 KLGREAADYISGTFIKPIKLEFEKVYYPYLLISKKRYAG 728
+L AA +S + P+ L+FE+V P LL+ RYAG
Sbjct: 284 RLPAAAAALVSASMSAPMALQFERVLAPCLLLHVNRYAG 322
>CGD|CAL0002431 [details] [associations]
symbol:POL1 species:5476 "Candida albicans" [GO:0005658
"alpha DNA polymerase:primase complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0003688 "DNA replication origin
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0006279 "premeiotic DNA replication"
evidence=IEA] [GO:0033314 "mitotic DNA replication checkpoint"
evidence=IEA] [GO:0006269 "DNA replication, synthesis of RNA
primer" evidence=IEA] [GO:0006270 "DNA replication initiation"
evidence=IEA] [GO:0000734 "gene conversion at mating-type locus,
DNA repair synthesis" evidence=IEA] [GO:0006278 "RNA-dependent DNA
replication" evidence=IEA] [GO:0000723 "telomere maintenance"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
CGD:CAL0002431 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0001882 SUPFAM:SSF53098 EMBL:AACQ01000003 EMBL:AACQ01000004
GO:GO:0003887 KO:K02320 eggNOG:COG0417 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 RefSeq:XP_722942.1 RefSeq:XP_723089.1
STRING:Q5ANM8 GeneID:3635144 GeneID:3635340 KEGG:cal:CaO19.13294
KEGG:cal:CaO19.5873 Uniprot:Q5ANM8
Length = 1470
Score = 335 (123.0 bits), Expect = 2.4e-26, Sum P(3) = 2.4e-26
Identities = 114/435 (26%), Positives = 199/435 (45%)
Query: 476 RKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCY 535
++A+ +N +++ Y+G V E G ++ + +DF SLYPSI+ +N+C+
Sbjct: 817 QEARVENAEEDATTATSNKKPKYQGGLVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNICF 876
Query: 536 STL------VTPEDARKLNLPPECVNKTPSGETFVKSNLQKGXXXXXXXXXXXXXXXXXX 589
+T+ +T ++ + + + PE T SG V L
Sbjct: 877 TTVNRDRFNITHDENKDMPILPE--RDTESG---VLPRLLN-------TLVSRRREVKKL 924
Query: 590 XXXXXXXPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTK 649
P +KA D +Q ALK++ANS+YG G + ++ VT+ GR+++ T+
Sbjct: 925 LKDPKNTPFQKAQYDIKQQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMDTR 984
Query: 650 KLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKL 709
+L E + V+YGDTDSVM+ G + + A+K+G + ++ + + +++
Sbjct: 985 QLAESS---------SLRVVYGDTDSVMIDTGASSYQEAIKIGEQFKVQVNERY-RLLEI 1034
Query: 710 EFEKVYYPYLLISKKRYAGLYW-----TNPEKFDKMDTKGIETVRRDNCLLVKNLVTECL 764
+ + V+ LL +KK+YA + TN E+ ++ KG++ RR+ C L K++ T L
Sbjct: 1035 DIDNVFKRLLLHAKKKYAAMNASINKATN-EETATLEVKGLDMRRREYCQLSKDISTFVL 1093
Query: 765 HKILVDRDIPGAVQYVKSTISDLL----MNRMDLSLLVITKGLTKTGDDYEVKAAHVELA 820
KIL D D A+ V + D+ N + + I L+K Y + ++
Sbjct: 1094 TKILSDSDPETALLEVYDYLDDMKGKIQNNEIPIDKYKINTKLSKDPKSYPNGKSMPQVQ 1153
Query: 821 ERMRKRDAATAPNVGDRVPYVIIKA---AKGAKAYERSEDPIYVLENNIPI---DTHYYL 874
+R R+ G + YVI A + ER+ +L P D +YYL
Sbjct: 1154 VALRLREEGKVIKAGSVITYVITAAKDDGDNSTVAERARAIQELLSKKDPDLKPDANYYL 1213
Query: 875 ENQISKPLLRIFEPI 889
E QI P+ R+ E I
Sbjct: 1214 EKQIFAPVERLLERI 1228
Score = 67 (28.6 bits), Expect = 2.4e-26, Sum P(3) = 2.4e-26
Identities = 47/219 (21%), Positives = 87/219 (39%)
Query: 198 KSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFMTYESNVLFALRFMIDCNIVGGN 257
K +LK++ LP + R I+ I+ G + +N+ + F++ NI+G
Sbjct: 430 KEAEYLKVL--LPFNNETNRNIMPANIE--GSTFRHVFGTNANMFES--FIMQRNIMGPC 483
Query: 258 WIEVPVGKYRKTAKTLSYCQLEF--D--CLYSDIISRHPEG--------EFSKMAPFRIL 305
W+E+ G + + S+CQ+E D S I P M +
Sbjct: 484 WLEIRGGDF-DAMQNASHCQVEVVVDRPSQISTIDKDAPSSPNLTVTAISMQTMLNAKTN 542
Query: 306 SFDIECAGRKGHFPEPTHDPV---IQVANLVTLQGEKQPFIRNVMTLKSCAPIVGVDVMS 362
++ +F P P+ I+ ++ TL + L+ A G + +
Sbjct: 543 KQEVVSVSLATYFDLPQDAPISEDIKPDDVFTL-ARPVGSVSFPPRLQQLAEKGGFQLRT 601
Query: 363 FETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
+E+ +L A I+ +DPDV IG+ + L L+ +
Sbjct: 602 CPSEKVLLNALAAKIKSLDPDVFIGHRLENISLDVLVHR 640
Score = 38 (18.4 bits), Expect = 2.4e-26, Sum P(3) = 2.4e-26
Identities = 18/99 (18%), Positives = 42/99 (42%)
Query: 405 HHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMAR----VTGVPISF 460
H + + QN L + LK+ L + ++ F + +++ + G S
Sbjct: 718 HSPVEINYQNLKYAEDAHLFLMALKENELNVKQTAEIAFATQILSLSKQLTNIAGNAWSH 777
Query: 461 LLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYE 499
LS ++ + LL + K+ N ++P+ + + +Y+
Sbjct: 778 TLSGTRAGRNEYILLHEFKRNNYIVPDKEDKTHKNTSYQ 816
Score = 38 (18.4 bits), Expect = 2.4e-23, Sum P(3) = 2.4e-23
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 360 VMSFETERDVLLAWRDFIREVDPDVMIGYNI 390
++ E ++ L D + E+ P ++ YN+
Sbjct: 379 IVDDEEDKSKKLTAIDVLEEIQPLLLANYNL 409
>UNIPROTKB|Q23AJ0 [details] [associations]
symbol:TTHERM_00424700 "DNA polymerase" species:312017
"Tetrahymena thermophila SB210" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=IBA] [GO:0006260 "DNA replication" evidence=IBA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006303 GO:GO:0003887 KO:K02320
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
TIGRFAMs:TIGR00592 EMBL:GG662724 RefSeq:XP_001013747.2
UniGene:Tth.5627 ProteinModelPortal:Q23AJ0 EnsemblProtists:EAR93502
GeneID:7845641 KEGG:tet:TTHERM_00424700 ProtClustDB:CLSZ2848284
Uniprot:Q23AJ0
Length = 1396
Score = 268 (99.4 bits), Expect = 1.2e-25, Sum P(4) = 1.2e-25
Identities = 85/257 (33%), Positives = 135/257 (52%)
Query: 603 LDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGY 662
LD +Q A K+ ANS+YG G + + + ++S +T+ GR ++ +KK+VED GY
Sbjct: 931 LDIKQKAFKLVANSMYGCLGFSSSRFYAMPLASFITAKGRHILFDSKKIVEDM-----GY 985
Query: 663 EHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLLIS 722
VIYGDTDS+M++ G A+K G ++ + K ++L+ + V+ LL+
Sbjct: 986 S----VIYGDTDSLMIKPGTNEFLEAVKTGLSIKIKVNSKY-KKLQLDIDGVFKNMLLLK 1040
Query: 723 KKRYAGLY---W-----TN-PEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDI 773
KK+YA L W TN PEK +K + KGI+ VRRD C L ++ + L IL +
Sbjct: 1041 KKKYATLKVANWEEVKNTNAPEKLEK-EIKGIDVVRRDWCQLSRDAGNKILEIILESKSS 1099
Query: 774 PGAVQYVKSTISDLL--MNRMDL--SLLVITKGLTKTGDDY-EVKAAHVELAER-MRKRD 827
+ +K + L +N+ ++ S ITK LTK D Y E HV +A+R ++++
Sbjct: 1100 ENMLDDIKKYLIQLNDDINQKNIKNSNYYITKRLTKRVDQYGEKNLPHVAVAQRSIQEKG 1159
Query: 828 AATAPNVGDRVPYVIIK 844
V + Y+I K
Sbjct: 1160 IDPQTYVNQIISYIICK 1176
Score = 119 (46.9 bits), Expect = 1.2e-25, Sum P(4) = 1.2e-25
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 489 KQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLVTPEDARKLN 548
K ++ Y+G V E G Y + I LDF SLYPSI+ +N+C++T V ++
Sbjct: 785 KNPKKKENKYKGGQVFEPEKGLYNEYIVLLDFNSLYPSIIQEFNVCFTTCVRDPIPLEMQ 844
Query: 549 LPPECVNK 556
+ P NK
Sbjct: 845 MAPFLGNK 852
Score = 51 (23.0 bits), Expect = 1.2e-25, Sum P(4) = 1.2e-25
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 850 KAYERSEDPIYVLEN-NIPIDTHYYLENQISKPLLRIFEPI 889
KAY E ++ ++ ++ ID YY Q+ +P+ R+ E I
Sbjct: 1204 KAYSPQE---FITQSKSLEIDLQYYKRFQLFEPIKRMLEVI 1241
Score = 43 (20.2 bits), Expect = 1.2e-25, Sum P(4) = 1.2e-25
Identities = 19/82 (23%), Positives = 41/82 (50%)
Query: 379 EVDPDVMIGYNICK--FD--LPYLIEKEDVHHSIISDLQN-GNAETRRR-LAVYCLKDAY 432
E+DPD+++ +++ F+ L + EK +++S L N G+++ + + + K A
Sbjct: 573 EIDPDIVVAHDLYSTVFEIILTRIREKGIRKWNLLSKLINIGSSDIPKYGSSTFKTKMAM 632
Query: 433 LPQRLLDKLMFIFNYVEMARVT 454
+ L+D L+ +V T
Sbjct: 633 KGRLLVDTLLSSQEFVNCVEYT 654
>ASPGD|ASPL0000000737 [details] [associations]
symbol:AN10755 species:162425 "Emericella nidulans"
[GO:0033314 "mitotic DNA replication checkpoint" evidence=IEA]
[GO:0006269 "DNA replication, synthesis of RNA primer"
evidence=IEA] [GO:0006270 "DNA replication initiation"
evidence=IEA] [GO:0000734 "gene conversion at mating-type locus,
DNA repair synthesis" evidence=IEA] [GO:0000723 "telomere
maintenance" evidence=IEA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0003688 "DNA replication origin
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0001882 "nucleoside binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR015088
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 Pfam:PF08996
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 EMBL:BN001301 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 OMA:GSGTDME InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 EnsemblFungi:CADANIAT00007097 Uniprot:C8V3I8
Length = 1459
Score = 317 (116.6 bits), Expect = 8.1e-25, Sum P(3) = 8.1e-25
Identities = 111/410 (27%), Positives = 187/410 (45%)
Query: 498 YEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLVTPEDARKLNLPPECVNKT 557
Y+G V E G Y++ + +DF SLYPSI+ YN+C++T+ A N E V +
Sbjct: 840 YKGGLVFEPERGLYDRYVLVMDFNSLYPSIIQEYNICFTTVDRTSSAENEN--DEKVPEV 897
Query: 558 PSGETFVKSNLQKGXX-XXXXXXXXXXXXXXXXXXXXXXXPLEKAVLDGRQLALKISANS 616
P+ S+ ++G P + A+ D +QLA K++ANS
Sbjct: 898 PA------SDAEQGILPRLIATLVGRRREVKKLMKDKRATPEQLALWDTKQLAFKLTANS 951
Query: 617 VYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSV 676
+YG G T + ++ T GR+++ TK+LVE K VIYGDTDSV
Sbjct: 952 MYGCLGYTQSRFYARPLAMLTTFKGREILRSTKELVESK---------QLRVIYGDTDSV 1002
Query: 677 MVQFGVPTVEAAMKLGREAADYISGTF-IKPIKLE--FEKVYYPYLLISKKRYA-GLYWT 732
M+ + T+ A+K+G E ++ + + I ++ F ++ L KK A +
Sbjct: 1003 MINTNMDTISDALKVGEELKTAVNERYKLLEIDIDNVFRRLL---LHAKKKYAAINMTEV 1059
Query: 733 NPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQYVKSTISDLLMNRM 792
+ + DK++ KG++ RR+ C L K L++IL D + V + +L N
Sbjct: 1060 DGKYVDKLEVKGLDMKRREYCALSKEASQRLLNEILSGDDQELVLNRVHDYLRELAGNMR 1119
Query: 793 DLSL-----LVITKGLTKTGDDYEVKAAH--VELAERMRKRDAATAPNVGDRVPYVIIKA 845
+ ++ ++ TK L+K ++Y K ++A R R PN D + Y++
Sbjct: 1120 EYTIPVQKYVIYTK-LSKRPEEYPNKETMPPAQVALRELARGKTVRPN--DVISYIVTSG 1176
Query: 846 AKGAKAY---ERS---EDPIYVLENNIPIDTHYYLENQISKPLLRIFEPI 889
+ +RS +D I ++ + D +YL QI P+ R+ PI
Sbjct: 1177 DSETSSLPPAKRSYTLQDVIKP-DSRLKPDIEFYLLKQIFPPIERLCAPI 1225
Score = 55 (24.4 bits), Expect = 8.1e-25, Sum P(3) = 8.1e-25
Identities = 15/72 (20%), Positives = 31/72 (43%)
Query: 224 IQLDGLGMKSFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAKTLSYCQLEFDCL 283
+ +D G + +N +F++ NI+G W+++ + S+C+ E
Sbjct: 458 LPMDTKGETFSHVFGTNTSLFEQFVLWKNIMGPCWLKIEEADF-SAVNNASWCKFECQTS 516
Query: 284 YSDIISRHPEGE 295
+IS P+ E
Sbjct: 517 KPGLISPVPDSE 528
Score = 54 (24.1 bits), Expect = 8.1e-25, Sum P(3) = 8.1e-25
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 364 ETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
++E+ +L + +DPDV++G+ + + DL L+ +
Sbjct: 611 KSEQMLLSKFLALFERMDPDVLMGHQLQEVDLSILLSR 648
>SGD|S000005046 [details] [associations]
symbol:POL1 "Catalytic subunit of the DNA polymerase I
alpha-primase complex" species:4932 "Saccharomyces cerevisiae"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001882
"nucleoside binding" evidence=IEA] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=IMP] [GO:0006270 "DNA replication
initiation" evidence=IC] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA;IDA] [GO:0006278 "RNA-dependent DNA
replication" evidence=IDA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA;IMP]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0000076
"DNA replication checkpoint" evidence=IBA] [GO:0000084 "S phase of
mitotic cell cycle" evidence=IBA] [GO:0006269 "DNA replication,
synthesis of RNA primer" evidence=IBA] [GO:0000734 "gene conversion
at mating-type locus, DNA repair synthesis" evidence=IBA]
[GO:0006271 "DNA strand elongation involved in DNA replication"
evidence=IBA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] [GO:0005657
"replication fork" evidence=IDA] [GO:0006279 "premeiotic DNA
replication" evidence=IMP] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IDA] [GO:0006273 "lagging
strand elongation" evidence=IC] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR015088 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 Pfam:PF08996 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 SGD:S000005046 GO:GO:0005739
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 EMBL:BK006947
GO:GO:0051539 GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0006278 EMBL:Z50161 GO:GO:0000084 GO:GO:0000076 PDB:3OIQ
PDBsum:3OIQ GO:GO:0006279 GO:GO:0003887 RefSeq:NP_014297.3
GeneID:855621 KEGG:sce:YNL102W KO:K02320 GO:GO:0006273
GO:GO:0006269 eggNOG:COG0417 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0005658 PDB:3FLO PDBsum:3FLO HOGENOM:HOG000163524
OrthoDB:EOG4K0TWK GO:GO:0000734 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 EMBL:J03268 EMBL:Z71378 EMBL:Z12126 PIR:S58250
RefSeq:NP_014303.3 ProteinModelPortal:P13382 SMR:P13382
DIP:DIP-2526N IntAct:P13382 MINT:MINT-421899 STRING:P13382
PaxDb:P13382 PeptideAtlas:P13382 PRIDE:P13382 EnsemblFungi:YNL102W
GeneID:855628 KEGG:sce:YNL096C CYGD:YNL102w
GeneTree:ENSGT00550000074891 KO:K02993 OMA:CASIQGT
EvolutionaryTrace:P13382 NextBio:979813 ArrayExpress:P13382
Genevestigator:P13382 GermOnline:YNL102W Uniprot:P13382
Length = 1468
Score = 342 (125.4 bits), Expect = 8.5e-25, Sum P(5) = 8.5e-25
Identities = 116/417 (27%), Positives = 194/417 (46%)
Query: 493 SEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLVTPEDARKLNLPPE 552
S++ Y+G V E G ++ + +DF SLYPSI+ +N+C++T+ D K E
Sbjct: 838 SKKAKYQGGLVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTTV----DRNK-----E 888
Query: 553 CVNKTPSGETFVKSNLQKGXXXXXXXXXXXXXXXXXXXXXXXXXPLEKAVLDGRQLALKI 612
+++ PS S + +G P ++ D RQ ALK+
Sbjct: 889 DIDELPS---VPPSEVDQGVLPRLLANLVDRRREVKKVMKTETDPHKRVQCDIRQQALKL 945
Query: 613 SANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGD 672
+ANS+YG G + ++ VT+ GR+++ +T++L E N V+YGD
Sbjct: 946 TANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMNTRQLAESM---------NLLVVYGD 996
Query: 673 TDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWT 732
TDSVM+ G A+K+G ++ + + ++++ + V+ LL +KK+YA L
Sbjct: 997 TDSVMIDTGCDNYADAIKIGLGFKRLVNERY-RLLEIDIDNVFKKLLLHAKKKYAALT-V 1054
Query: 733 NPEKFDK----MDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQYVKSTISDLL 788
N +K ++ KG++ RR+ C L +++ L+ IL D+D A+Q V + D+
Sbjct: 1055 NLDKNGNGTTVLEVKGLDMKRREFCPLSRDVSIHVLNTILSDKDPEEALQEVYDYLEDIR 1114
Query: 789 M----NRMDLSLLVITKGLTKTGDDYE--VKAAHVELAERMRKRDAATAPNVGDRVPYVI 842
+ N + + I L+K Y V++A RMRK A G + +VI
Sbjct: 1115 IKVETNNIRIDKYKINMKLSKDPKAYPGGKNMPAVQVALRMRK--AGRVVKAGSVITFVI 1172
Query: 843 IK------AAK--GAKAYERSE--DPIYVLENNIPIDTHYYLENQISKPLLRIFEPI 889
K AA ER+ + + + NN+ D YYLE QI P+ R+ E I
Sbjct: 1173 TKQDEIDNAADTPALSVAERAHALNEVMIKSNNLIPDPQYYLEKQIFAPVERLLERI 1229
Score = 49 (22.3 bits), Expect = 8.5e-25, Sum P(5) = 8.5e-25
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 360 VMSFETERDVLLAWRDFIREVDPDVMIGYNI 390
V F E+ +L + ++ DPDV+IG+ +
Sbjct: 610 VRLFNNEKAMLSCFCAMLKVEDPDVIIGHRL 640
Score = 44 (20.5 bits), Expect = 8.5e-25, Sum P(5) = 8.5e-25
Identities = 21/86 (24%), Positives = 33/86 (38%)
Query: 935 NGTLCSHCKGREAELYCKTVSQVQE-LEV---LFGRLWTQCQECQ-GSLHQDVL-----C 984
NG C HC+ L + SQ++ + L+ W QC + G + + V C
Sbjct: 1310 NGLQCKHCEQLFTPL--QLTSQIEHSIRAHISLYYAGWLQCDDSTCGIVTRQVSVFGKRC 1367
Query: 985 TSRDCPIFYRRKKAQKDMAEAKLQLD 1010
+ C R K + K + L D
Sbjct: 1368 LNDGCTGVMRYKYSDKQLYNQLLYFD 1393
Score = 39 (18.8 bits), Expect = 8.5e-25, Sum P(5) = 8.5e-25
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 859 IYVLENNIPIDTHYYLENQISKPLLRIFEPI-------LKNA-----SK 895
+ + NN+ D YYLE QI P+ R+ E I L A K
Sbjct: 1199 VMIKSNNLIPDPQYYLEKQIFAPVERLLERIDSFNVVRLSEALGLDSKK 1247
Score = 37 (18.1 bits), Expect = 8.5e-25, Sum P(5) = 8.5e-25
Identities = 11/55 (20%), Positives = 21/55 (38%)
Query: 273 LSYCQLEFDCLYSDIISRHPEGEFSKMAPFRILSFDIECAGRKGHFPEPTHDPVI 327
L YC++ + + + S M L ++ R+G P H+ +I
Sbjct: 357 LDYCEVNNTLILFGKVKLKDDNCVSAMVQINGLCRELFFLPREGKTPTDIHEEII 411
>UNIPROTKB|Q5B0J8 [details] [associations]
symbol:AN5932.2 "DNA polymerase" species:227321
"Aspergillus nidulans FGSC A4" [GO:0000734 "gene conversion at
mating-type locus, DNA repair synthesis" evidence=IBA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IBA] [GO:0005634
"nucleus" evidence=IBA] [GO:0005658 "alpha DNA polymerase:primase
complex" evidence=IBA] [GO:0006260 "DNA replication" evidence=IBA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] InterPro:IPR004399 InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR015088 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 Pfam:PF08996 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 GO:GO:0001882 SUPFAM:SSF53098 EMBL:AACD01000101
GO:GO:0009228 GO:GO:0008408 GO:GO:0006303 InterPro:IPR013749
Pfam:PF08543 GO:GO:0003887 KO:K02320 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 OrthoDB:EOG4K0TWK GO:GO:0000734
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
Gene3D:1.20.910.10 InterPro:IPR016084 SUPFAM:SSF48613
InterPro:IPR004305 Pfam:PF03070 GO:GO:0008972 TIGRFAMs:TIGR00097
RefSeq:XP_663536.1 ProteinModelPortal:Q5B0J8 STRING:Q5B0J8
GeneID:2871177 KEGG:ani:AN5932.2 Uniprot:Q5B0J8
Length = 2019
Score = 317 (116.6 bits), Expect = 2.9e-24, Sum P(3) = 2.9e-24
Identities = 111/410 (27%), Positives = 187/410 (45%)
Query: 498 YEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLVTPEDARKLNLPPECVNKT 557
Y+G V E G Y++ + +DF SLYPSI+ YN+C++T+ A N E V +
Sbjct: 840 YKGGLVFEPERGLYDRYVLVMDFNSLYPSIIQEYNICFTTVDRTSSAENEN--DEKVPEV 897
Query: 558 PSGETFVKSNLQKGXX-XXXXXXXXXXXXXXXXXXXXXXXPLEKAVLDGRQLALKISANS 616
P+ S+ ++G P + A+ D +QLA K++ANS
Sbjct: 898 PA------SDAEQGILPRLIATLVGRRREVKKLMKDKRATPEQLALWDTKQLAFKLTANS 951
Query: 617 VYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSV 676
+YG G T + ++ T GR+++ TK+LVE K VIYGDTDSV
Sbjct: 952 MYGCLGYTQSRFYARPLAMLTTFKGREILRSTKELVESK---------QLRVIYGDTDSV 1002
Query: 677 MVQFGVPTVEAAMKLGREAADYISGTF-IKPIKLE--FEKVYYPYLLISKKRYA-GLYWT 732
M+ + T+ A+K+G E ++ + + I ++ F ++ L KK A +
Sbjct: 1003 MINTNMDTISDALKVGEELKTAVNERYKLLEIDIDNVFRRLL---LHAKKKYAAINMTEV 1059
Query: 733 NPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQYVKSTISDLLMNRM 792
+ + DK++ KG++ RR+ C L K L++IL D + V + +L N
Sbjct: 1060 DGKYVDKLEVKGLDMKRREYCALSKEASQRLLNEILSGDDQELVLNRVHDYLRELAGNMR 1119
Query: 793 DLSL-----LVITKGLTKTGDDYEVKAAH--VELAERMRKRDAATAPNVGDRVPYVIIKA 845
+ ++ ++ TK L+K ++Y K ++A R R PN D + Y++
Sbjct: 1120 EYTIPVQKYVIYTK-LSKRPEEYPNKETMPPAQVALRELARGKTVRPN--DVISYIVTSG 1176
Query: 846 AKGAKAY---ERS---EDPIYVLENNIPIDTHYYLENQISKPLLRIFEPI 889
+ +RS +D I ++ + D +YL QI P+ R+ PI
Sbjct: 1177 DSETSSLPPAKRSYTLQDVIKP-DSRLKPDIEFYLLKQIFPPIERLCAPI 1225
Score = 55 (24.4 bits), Expect = 2.9e-24, Sum P(3) = 2.9e-24
Identities = 15/72 (20%), Positives = 31/72 (43%)
Query: 224 IQLDGLGMKSFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAKTLSYCQLEFDCL 283
+ +D G + +N +F++ NI+G W+++ + S+C+ E
Sbjct: 458 LPMDTKGETFSHVFGTNTSLFEQFVLWKNIMGPCWLKIEEADF-SAVNNASWCKFECQTS 516
Query: 284 YSDIISRHPEGE 295
+IS P+ E
Sbjct: 517 KPGLISPVPDSE 528
Score = 54 (24.1 bits), Expect = 2.9e-24, Sum P(3) = 2.9e-24
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 364 ETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
++E+ +L + +DPDV++G+ + + DL L+ +
Sbjct: 611 KSEQMLLSKFLALFERMDPDVLMGHQLQEVDLSILLSR 648
>UNIPROTKB|Q0JHE4 [details] [associations]
symbol:Os01g0868300 "DNA polymerase" species:39947 "Oryza
sativa Japonica Group" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0005658 "alpha DNA polymerase:primase complex" evidence=IBA]
[GO:0006260 "DNA replication" evidence=IBA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0001882
SUPFAM:SSF53098 EMBL:AP008207 GO:GO:0008408 GO:GO:0006303
GO:GO:0003887 KO:K02320 GO:GO:0019985 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0005658 TIGRFAMs:TIGR00592
RefSeq:NP_001044920.1 UniGene:Os.47313 STRING:Q0JHE4 GeneID:4325052
KEGG:osa:4325052 Gramene:Q0JHE4 ProtClustDB:CLSN2686901
Uniprot:Q0JHE4
Length = 1244
Score = 301 (111.0 bits), Expect = 2.8e-23, Sum P(3) = 2.8e-23
Identities = 84/302 (27%), Positives = 154/302 (50%)
Query: 598 LEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFT 657
L++ D +Q ALK++ANS+YG G + + ++ +T GR+++++T LV++
Sbjct: 699 LKRQQFDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQNTVDLVQNNL- 757
Query: 658 TVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYP 717
N EVIYGDTDS+M+ G+ + A + + ++ + + ++++ + +Y
Sbjct: 758 -------NLEVIYGDTDSIMIHTGLDDISRAKGIAGKVIQEVNKKY-RCLEIDLDGIYKR 809
Query: 718 YLLISKKRYAGLYWTNPEKF-DKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGA 776
LL+ KK+YA + + ++ KG++ VRRD LL K + CL++IL
Sbjct: 810 MLLLKKKKYAAIKVALDGSLRENIERKGLDMVRRDWSLLSKEIGDFCLNQILSGGSCDDV 869
Query: 777 VQYVKSTI----SDLLMNRMDLSLLVITKGLTKTGDDY-EVK-AAHVELAERMRKRDAAT 830
++ + S++ + + +L +ITK LTK +DY + K HV++A R+ K++ +
Sbjct: 870 IESIHSSLVQVQEQMRGGQTELEKYIITKSLTKAPEDYPDAKNQPHVQVALRL-KQNGYS 928
Query: 831 APNVGDRVPYVIIKAAKGAKAY-----ERSEDPIYVLEN--NIPIDTHYYLENQISKPLL 883
+ GD VPY+I + +R+ P + N ID YYL QI +
Sbjct: 929 GCSAGDTVPYIICSQQDSESTHSGGIAQRARHPEELKRNPDKWMIDIDYYLSQQIHPVVS 988
Query: 884 RI 885
R+
Sbjct: 989 RL 990
Score = 179 (68.1 bits), Expect = 2.9e-10, Sum P(3) = 2.9e-10
Identities = 52/169 (30%), Positives = 84/169 (49%)
Query: 487 NVKQAGSEQG-TYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLVTPEDAR 545
+V Q +++G +Y G VLE + G Y+K + LDF SLYPSI+ YN+C++T+ D
Sbjct: 603 HVDQGKTKKGPSYAGGLVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTTVDRSADGN 662
Query: 546 KLNLPPECVNKTPSGETFVKSNLQKGXXXXXXXXXXXXXXXXXXXXXXXXXPLEKAVLDG 605
NLP +KT T V L K L++ D
Sbjct: 663 VPNLP---ASKT----TGVLPELLKSLVERRRMVKSWLKTASG---------LKRQQFDI 706
Query: 606 RQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVED 654
+Q ALK++ANS+YG G + + ++ +T GR+++++T LV++
Sbjct: 707 QQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQNTVDLVQN 755
Score = 67 (28.6 bits), Expect = 2.8e-23, Sum P(3) = 2.8e-23
Identities = 16/46 (34%), Positives = 29/46 (63%)
Query: 357 GVDVMSFET-ERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
G +V++ E+ ER +L + ++D DV++G+NI FDL L+ +
Sbjct: 357 GSNVLALESSERALLNRLMIELSKLDCDVLVGHNISGFDLDVLLHR 402
Score = 41 (19.5 bits), Expect = 2.8e-23, Sum P(3) = 2.8e-23
Identities = 18/76 (23%), Positives = 30/76 (39%)
Query: 89 QSIMFQQLD--IDYVIGDSNRELLPLSSGSAAIIRIFGVTREGHSVCCKVHGFEPYFYIS 146
+S F+ D + + I D+ E +SG+ + V + HS C V + Y
Sbjct: 53 ESSEFELKDGALPFYILDAYEEPFGANSGTVYLFGKVEVGKRFHSCCVVVKNMQRCIYAI 112
Query: 147 CPQGMGP-DDISHFHQ 161
+ P D IS +
Sbjct: 113 PSSSIFPRDTISRLEK 128
>POMBASE|SPAC3H5.06c [details] [associations]
symbol:pol1 "DNA polymerase alpha catalytic subunit"
species:4896 "Schizosaccharomyces pombe" [GO:0000723 "telomere
maintenance" evidence=IMP] [GO:0000734 "gene conversion at
mating-type locus, DNA repair synthesis" evidence=IMP] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0001882 "nucleoside binding"
evidence=IEA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IGI] [GO:0006269 "DNA
replication, synthesis of RNA primer" evidence=IGI] [GO:0006270
"DNA replication initiation" evidence=IMP] [GO:0033314 "mitotic DNA
replication checkpoint" evidence=IMP] [GO:0043596 "nuclear
replication fork" evidence=IGI] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
PomBase:SPAC3H5.06c EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0046872 GO:GO:0051539 GO:GO:0003688
GO:GO:0000790 GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0000723 GO:GO:0033314 GO:GO:0003887 KO:K02320 GO:GO:0006269
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658 EMBL:X58299
EMBL:X69673 EMBL:AB027936 PIR:S15993 RefSeq:NP_594186.1
ProteinModelPortal:P28040 IntAct:P28040 STRING:P28040
EnsemblFungi:SPAC3H5.06c.1 GeneID:2543629 KEGG:spo:SPAC3H5.06c
HOGENOM:HOG000163524 OMA:GSGTDME OrthoDB:EOG4K0TWK NextBio:20804635
GO:GO:0000734 InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
Uniprot:P28040
Length = 1405
Score = 318 (117.0 bits), Expect = 3.9e-23, Sum P(3) = 3.9e-23
Identities = 101/373 (27%), Positives = 178/373 (47%)
Query: 597 PLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKF 656
P ++ D +Q ALK++ANS+YG G T + ++ +T GR+ + +TK+L +
Sbjct: 916 PTQRLQWDIQQQALKLTANSMYGCLGYTKSRFYARPLAVLITYKGREALMNTKELADQ-- 973
Query: 657 TTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYY 716
+G +VIYGDTDSVM+ V A+++G E + ++ + K ++++ + VY
Sbjct: 974 --MG-----LQVIYGDTDSVMLNTNVTDKNHALRIGNEFKEKVNERYSK-LEIDIDNVYQ 1025
Query: 717 PYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGA 776
LL +KK+YA L + K +D KG++ RR+ C L K CL +IL
Sbjct: 1026 RMLLHAKKKYAALQLDSQGK-PNLDVKGLDMKRREFCTLAKEASKFCLDQILSGELTETV 1084
Query: 777 VQYVKSTISDL---LMN-RMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAP 832
++ + S + D + N + + +I L K +DY + ++K+
Sbjct: 1085 IENIHSYLMDFSEKMRNGKFPANKFIIFNRLGKNPEDYPNGKTMPFVQVALKKKARGENV 1144
Query: 833 NVGDRVPYVIIKAAKGAKAYERSEDPIYVLENN--IPIDTHYYLENQISKPLLRIFEPIL 890
VGD +P++I + +R+ P ++ N + ID +YYL +QI P+ R+ PI
Sbjct: 1145 RVGDVIPFIIAGSDADGHPADRAYSPQEIMNTNSTLVIDYNYYLSHQILPPIERVIAPIE 1204
Query: 891 -KNASK--ELLSGDHTRSISISTPSNSGIMKFAKRQLSCIGCKALISNGTL-CSHCKGRE 946
N ++ E L D + S T +S ++ + L+ C +S L C C
Sbjct: 1205 GTNRARLAECLGLDARKYYSHETSESSAFQRY-ESTLTDDQCFINVSPLLLKCPSCNATS 1263
Query: 947 AELYCKTVSQVQE 959
L ++V ++E
Sbjct: 1264 FSL--RSVKSLKE 1274
Score = 164 (62.8 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 47/163 (28%), Positives = 78/163 (47%)
Query: 492 GSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLV-TPEDARKLNLP 550
G ++ Y+G V E + G YE I +DF SLYPSI+ YN+C++T+ +P ++ +
Sbjct: 819 GKKKDKYKGGLVFEPQKGLYETCILVMDFNSLYPSIIQEYNICFTTVDRSPSNSDSDDQI 878
Query: 551 PECVNKTPSGETFVKSNLQKGXXXXXXXXXXXXXXXXXXXXXXXXXPLEKAVLDGRQLAL 610
P+ TPS +N Q P ++ D +Q AL
Sbjct: 879 PD----TPSAS----AN-QGIFPRLIANLVERRRQIKGLLKDNSATPTQRLQWDIQQQAL 929
Query: 611 KISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVE 653
K++ANS+YG G T + ++ +T GR+ + +TK+L +
Sbjct: 930 KLTANSMYGCLGYTKSRFYARPLAVLITYKGREALMNTKELAD 972
Score = 51 (23.0 bits), Expect = 3.9e-23, Sum P(3) = 3.9e-23
Identities = 35/188 (18%), Positives = 71/188 (37%)
Query: 237 YESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAKTLSYCQLEFDCLYSDIIS-RHPEGE 295
+ +N +F++ ++G W+++ + K S+C++E C IS + E
Sbjct: 458 FGTNTALFEQFVLSRRVMGPCWLKIQQPNF-DAVKNASWCRVEIGCSSPQNISVSFEKNE 516
Query: 296 F-SKMAPFRILSFDIECAGRKGHFPEPTHDPVIQVANLVTLQ----GEKQPF--IRNVMT 348
SK P ++S K + ++ V ++ P +
Sbjct: 517 ITSKTPPMTVMSLAFRTLINKEQNKQEVVMISARIFENVDIEKGLPANDMPSYSFSLIRP 576
Query: 349 LKSCAP-----IVGVDVMSFETERDVLLAWRDFIREV---DPDVMIGYN--ICKFDLPYL 398
LK P + S ER + +F+ +V DPDV G++ +C L
Sbjct: 577 LKQIFPNGFEKLARQHKSSIFCERSEVSLLNNFLNKVRTYDPDVYFGHDFEMCYSVLLSR 636
Query: 399 IEKEDVHH 406
+++ +H+
Sbjct: 637 LKERKIHN 644
Score = 44 (20.5 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 943 KGREAELYCKTVSQVQELEVLFG 965
KGREA + K ++ L+V++G
Sbjct: 959 KGREALMNTKELADQMGLQVIYG 981
Score = 40 (19.1 bits), Expect = 3.9e-23, Sum P(3) = 3.9e-23
Identities = 29/171 (16%), Positives = 71/171 (41%)
Query: 399 IEKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPI 458
I+++D++ A V+C D + + K+ + + + G
Sbjct: 707 IKRQDINQEKALQSWTDTAHGLLDYLVHCEIDTFFIAAVAFKIQMLQLSKNLTNIAGNSW 766
Query: 459 SFLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQA--------GSEQGTYEGATVLEARAGF 510
+ L+ ++ + LL + K+ ++P+ +Q+ G+E G E + L +
Sbjct: 767 ARTLTGTRAERNEYILLHEFKKNGYIVPDKQQSIRRHAEAFGAEDGLQEES--LGKKKDK 824
Query: 511 YEKPIATLDFASLYPS--IMMAYNLCYSTLVTPEDARKLNLPPECVNKTPS 559
Y+ + LY + ++M +N Y +++ ++ N+ V+++PS
Sbjct: 825 YKGGLVFEPQKGLYETCILVMDFNSLYPSII-----QEYNICFTTVDRSPS 870
Score = 37 (18.1 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 531 YNLCYSTLVTPEDARKLN 548
+ +CYS L++ RK++
Sbjct: 626 FEMCYSVLLSRLKERKIH 643
>UNIPROTKB|O48653 [details] [associations]
symbol:LOC_Os01g64820 "DNA polymerase alpha catalytic
subunit" species:39947 "Oryza sativa Japonica Group" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS;IDA]
[GO:0003896 "DNA primase activity" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006269 "DNA replication, synthesis of
RNA primer" evidence=IDA] [GO:0006270 "DNA replication initiation"
evidence=IEP] [GO:0006273 "lagging strand elongation" evidence=IEP]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR015088
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 Pfam:PF08996
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005634
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0051539
GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0003896
GO:GO:0003887 GO:GO:0006273 eggNOG:COG0417 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 OMA:CASIQGT EMBL:AB004461 EMBL:AP003286
STRING:O48653 Gramene:O48653 Uniprot:O48653
Length = 1534
Score = 301 (111.0 bits), Expect = 5.7e-23, Sum P(4) = 5.7e-23
Identities = 84/302 (27%), Positives = 154/302 (50%)
Query: 598 LEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFT 657
L++ D +Q ALK++ANS+YG G + + ++ +T GR+++++T LV++
Sbjct: 989 LKRQQFDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQNTVDLVQNNL- 1047
Query: 658 TVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYP 717
N EVIYGDTDS+M+ G+ + A + + ++ + + ++++ + +Y
Sbjct: 1048 -------NLEVIYGDTDSIMIHTGLDDISRAKGIAGKVIQEVNKKY-RCLEIDLDGIYKR 1099
Query: 718 YLLISKKRYAGLYWTNPEKF-DKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGA 776
LL+ KK+YA + + ++ KG++ VRRD LL K + CL++IL
Sbjct: 1100 MLLLKKKKYAAIKVALDGSLRENIERKGLDMVRRDWSLLSKEIGDFCLNQILSGGSCDDV 1159
Query: 777 VQYVKSTI----SDLLMNRMDLSLLVITKGLTKTGDDY-EVK-AAHVELAERMRKRDAAT 830
++ + S++ + + +L +ITK LTK +DY + K HV++A R+ K++ +
Sbjct: 1160 IESIHSSLVQVQEQMRGGQTELEKYIITKSLTKAPEDYPDAKNQPHVQVALRL-KQNGYS 1218
Query: 831 APNVGDRVPYVIIKAAKGAKAY-----ERSEDPIYVLEN--NIPIDTHYYLENQISKPLL 883
+ GD VPY+I + +R+ P + N ID YYL QI +
Sbjct: 1219 GCSAGDTVPYIICSQQDSESTHSGGIAQRARHPEELKRNPDKWMIDIDYYLSQQIHPVVS 1278
Query: 884 RI 885
R+
Sbjct: 1279 RL 1280
Score = 179 (68.1 bits), Expect = 4.6e-10, Sum P(4) = 4.6e-10
Identities = 52/169 (30%), Positives = 84/169 (49%)
Query: 487 NVKQAGSEQG-TYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLVTPEDAR 545
+V Q +++G +Y G VLE + G Y+K + LDF SLYPSI+ YN+C++T+ D
Sbjct: 893 HVDQGKTKKGPSYAGGLVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTTVDRSADGN 952
Query: 546 KLNLPPECVNKTPSGETFVKSNLQKGXXXXXXXXXXXXXXXXXXXXXXXXXPLEKAVLDG 605
NLP +KT T V L K L++ D
Sbjct: 953 VPNLP---ASKT----TGVLPELLKSLVERRRMVKSWLKTASG---------LKRQQFDI 996
Query: 606 RQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVED 654
+Q ALK++ANS+YG G + + ++ +T GR+++++T LV++
Sbjct: 997 QQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQNTVDLVQN 1045
Score = 67 (28.6 bits), Expect = 5.7e-23, Sum P(4) = 5.7e-23
Identities = 16/46 (34%), Positives = 29/46 (63%)
Query: 357 GVDVMSFET-ERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
G +V++ E+ ER +L + ++D DV++G+NI FDL L+ +
Sbjct: 647 GSNVLALESSERALLNRLMIELSKLDCDVLVGHNISGFDLDVLLHR 692
Score = 46 (21.3 bits), Expect = 5.7e-23, Sum P(4) = 5.7e-23
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 5 NGSARKRPPPTPKESWPNKQQA 26
+G+ RKR P P+ P +Q A
Sbjct: 112 DGAPRKRKQPRPQSKRPPQQSA 133
Score = 41 (19.5 bits), Expect = 5.7e-23, Sum P(4) = 5.7e-23
Identities = 18/76 (23%), Positives = 30/76 (39%)
Query: 89 QSIMFQQLD--IDYVIGDSNRELLPLSSGSAAIIRIFGVTREGHSVCCKVHGFEPYFYIS 146
+S F+ D + + I D+ E +SG+ + V + HS C V + Y
Sbjct: 343 ESSEFELKDGALPFYILDAYEEPFGANSGTVYLFGKVEVGKRFHSCCVVVKNMQRCIYAI 402
Query: 147 CPQGMGP-DDISHFHQ 161
+ P D IS +
Sbjct: 403 PSSSIFPRDTISRLEK 418
>UNIPROTKB|P21189 [details] [associations]
symbol:polB "DNA polymerase II" species:83333 "Escherichia
coli K-12" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0045004 "DNA replication proofreading"
evidence=IDA] [GO:0009432 "SOS response" evidence=IEA;IEP]
[GO:0006261 "DNA-dependent DNA replication" evidence=IMP]
[GO:0008296 "3'-5'-exodeoxyribonuclease activity" evidence=IDA]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IDA;IBA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0005694 GO:GO:0000166 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
SUPFAM:SSF53098 EMBL:M35371 EMBL:M62646 EMBL:M37727 EMBL:M38283
GO:GO:0009432 GO:GO:0003887 GO:GO:0006297 EMBL:X54847 PIR:S15943
RefSeq:NP_414602.1 RefSeq:YP_488366.1 PDB:1Q8I PDB:3K57 PDB:3K58
PDB:3K59 PDB:3K5L PDB:3K5M PDB:3K5N PDB:3K5O PDB:3MAQ PDBsum:1Q8I
PDBsum:3K57 PDBsum:3K58 PDBsum:3K59 PDBsum:3K5L PDBsum:3K5M
PDBsum:3K5N PDBsum:3K5O PDBsum:3MAQ ProteinModelPortal:P21189
SMR:P21189 IntAct:P21189 PRIDE:P21189
EnsemblBacteria:EBESCT00000004906 EnsemblBacteria:EBESCT00000016904
GeneID:12932627 GeneID:944779 KEGG:ecj:Y75_p0060 KEGG:eco:b0060
PATRIC:32115221 EchoBASE:EB0740 EcoGene:EG10747 eggNOG:COG0417
HOGENOM:HOG000221829 KO:K02336 OMA:VLDGIDW ProtClustDB:PRK05762
BioCyc:EcoCyc:EG10747-MONOMER BioCyc:ECOL316407:JW0059-MONOMER
BioCyc:MetaCyc:EG10747-MONOMER EvolutionaryTrace:P21189
Genevestigator:P21189 GO:GO:0008296 GO:GO:0045004 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 Uniprot:P21189
Length = 783
Score = 215 (80.7 bits), Expect = 6.9e-23, Sum P(3) = 6.9e-23
Identities = 93/316 (29%), Positives = 145/316 (45%)
Query: 609 ALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYEHNAEV 668
ALKI N+ YG G T + ++SS+T G Q++ TK L+E + GY+ V
Sbjct: 491 ALKIIMNAFYGVLGTTACRFFDPRLASSITMRGHQIMRQTKALIEAQ-----GYD----V 541
Query: 669 IYGDTDSVMVQF-GVPTVEAAMKLGREAADYISG----TFIKP-----IKLEFEKVYYPY 718
IYGDTDS V G + E A K+GR +++ T K ++LE+E + +
Sbjct: 542 IYGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNAWWAETLQKQRLTSALELEYETHFCRF 601
Query: 719 LLI--------SKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVD 770
L+ SKKRYAGL ++ +M KG+ETVR D L + E +I
Sbjct: 602 LMPTIRGADTGSKKRYAGLIQEGDKQ--RMVFKGLETVRTDWTPLAQQFQQELYLRIF-- 657
Query: 771 RDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYE------VKAAHVELAERMR 824
R+ P +YV+ TI L+ +D + LV K L + +Y+ V+AA + E +
Sbjct: 658 RNEPYQ-EYVRETIDKLMAGELD-ARLVYRKRLRRPLSEYQRNVPPHVRAARLADEENQK 715
Query: 825 KRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQISKPLLR 884
+ N G + YV Y+RS P+D +YL Q+ +P+
Sbjct: 716 RGRPLQYQNRGT-IKYVWTTNGPEPLDYQRS-----------PLDYEHYLTRQL-QPVAE 762
Query: 885 IFEPILKNASKELLSG 900
P +++ L++G
Sbjct: 763 GILPFIEDNFATLMTG 778
Score = 118 (46.6 bits), Expect = 6.9e-23, Sum P(3) = 6.9e-23
Identities = 34/116 (29%), Positives = 54/116 (46%)
Query: 417 AETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQL-L 475
AE + LA Y LKD L ++ K + +E A V G+P+ G S+ L
Sbjct: 322 AEDKPALATYNLKDCELVTQIFHKTEIMPFLLERATVNGLPVD---RHGGSVAAFGHLYF 378
Query: 476 RKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAY 531
+ + V PN+ + G V+++R G Y+ + LD+ SLYPSI+ +
Sbjct: 379 PRMHRAGYVAPNLGEVPPHASP--GGYVMDSRPGLYDS-VLVLDYKSLYPSIIRTF 431
Score = 68 (29.0 bits), Expect = 6.9e-23, Sum P(3) = 6.9e-23
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 370 LLAWRDFIREVDPDVMIGYNICKFDLPYLIEKEDVHHSIISDLQNGNAETRRR 422
L AW DPDV+IG+N+ +FDL +++K + + L N+E R
Sbjct: 208 LNAW---FANYDPDVIIGWNVVQFDLR-MLQKHAERYRLPLRLGRDNSELEWR 256
>UNIPROTKB|Q755Y6 [details] [associations]
symbol:AER381C "DNA polymerase" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0000734 "gene conversion at mating-type
locus, DNA repair synthesis" evidence=IBA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IBA] [GO:0005634
"nucleus" evidence=IBA] [GO:0005658 "alpha DNA polymerase:primase
complex" evidence=IBA] [GO:0006260 "DNA replication" evidence=IBA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006303 EMBL:AE016818
GenomeReviews:AE016818_GR GO:GO:0003887 KO:K02320 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 OrthoDB:EOG4K0TWK GO:GO:0000734
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592 OMA:CASIQGT
RefSeq:NP_985237.1 ProteinModelPortal:Q755Y6 STRING:Q755Y6
EnsemblFungi:AAS53061 GeneID:4621453 KEGG:ago:AGOS_AER381C
PhylomeDB:Q755Y6 Uniprot:Q755Y6
Length = 1435
Score = 269 (99.8 bits), Expect = 6.5e-21, Sum P(3) = 6.5e-21
Identities = 81/304 (26%), Positives = 149/304 (49%)
Query: 599 EKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTT 658
+KA D RQ ALK++ANS+YG G + ++ VT+ GR+++ +T++L E +
Sbjct: 906 KKAECDIRQQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMNTRQLAE----S 961
Query: 659 VGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPY 718
+G V+YGDTDSVM+ G A+ +G ++ + + ++++ + V+
Sbjct: 962 LG-----LAVVYGDTDSVMIDTGCDNYREALSIGENFKKLVNERY-RLLEIDIDNVFKKL 1015
Query: 719 LLISKKRYAGL---YWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPG 775
LL +KK+YA L + + ++ KG++ RR+ C L K + T+ L+ IL D+D
Sbjct: 1016 LLHAKKKYAALNVSFDKAGNEITSLEVKGLDMRRREYCPLSKEVSTQVLNTILSDQDSES 1075
Query: 776 AVQ----YVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATA 831
A++ Y+++ S + N + I L+K Y + ++ R
Sbjct: 1076 ALENVYDYMETIKSKIENNEIRADKFKINTRLSKDPKSYPNGKTMPAVQVALKMRAVGRV 1135
Query: 832 PNVGDRVPYVIIKAAKGAKAYERSED--PIYVLENN----IPIDTHYYLENQISKPLLRI 885
N G + +V+ K ++ ++ P++ + N +P D YYLE QI P+ R+
Sbjct: 1136 VNAGTVITFVVTKGTDESEQSNPADRARPLHEVMNKANGLVP-DPMYYLEKQIFAPVERL 1194
Query: 886 FEPI 889
+ I
Sbjct: 1195 LQKI 1198
Score = 152 (58.6 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 49/188 (26%), Positives = 89/188 (47%)
Query: 472 SQLLRKAKQK-NLVIPNVKQA-----GSEQGTYEGATVLEARAGFYEKPIATLDFASLYP 525
S+ +R A+Q+ N+ P+ A +++ Y+G V + G ++ I +DF SLYP
Sbjct: 786 SRQMRSARQQQNVDTPDGDVATDSRNSNKKAKYQGGLVFDPDKGLHKNYILVMDFNSLYP 845
Query: 526 SIMMAYNLCYSTLVTPEDARKLNLPPECVNKTPSGETFVKSNLQKGXXXXXXXXXXXXXX 585
SI+ +N+C++T+ + N P +++ P V + + G
Sbjct: 846 SIIQEFNICFTTV-------ERN--PHDIDELPQ----VPTEAKPGVLPRLLANLVERRR 892
Query: 586 XXXXXXXXXXXPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMI 645
+KA D RQ ALK++ANS+YG G + ++ VT+ GR+++
Sbjct: 893 EVKKLMNAETDAHKKAECDIRQQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREIL 952
Query: 646 EHTKKLVE 653
+T++L E
Sbjct: 953 MNTRQLAE 960
Score = 81 (33.6 bits), Expect = 6.5e-21, Sum P(3) = 6.5e-21
Identities = 48/222 (21%), Positives = 92/222 (41%)
Query: 198 KSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFMTYESNVLFALRFMIDCNIVGGN 257
K +LK++ LP C+ ++ I D G + N F+I I+G
Sbjct: 409 KEAEYLKVL--LPYETPKCKNVV---IPSDLCGDTFCHVFGGNSSIFESFVIQRRILGPC 463
Query: 258 WIEVPVGKYRKTAKTLSYCQLEFDCLYSDIISRH------PEGEFSKMAPFRILSF---- 307
W+ + G + + K S+C E IS H PE + ++ +++
Sbjct: 464 WLSIKQGDFNEI-KNSSHCDSEVFISIPQNISPHQERLPAPELKCVSLSVQTVMNVKDNK 522
Query: 308 -DIECAGRKGHFPEPTHDPV---IQVANLVTL----QGEKQPFIRNVMTLKSCAPIVGVD 359
+I + P P+ ++ ++++TL +G P NV++ K + G
Sbjct: 523 QEIVSISMCYYNDLPQDTPIEENLKPSDIITLVRPVKGSSFPPGLNVLSRKE---LQGT- 578
Query: 360 VMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
V +F +E+ +L + ++ DPDV+IG+ + L L +
Sbjct: 579 VRTFNSEKVLLNCFCAMMKRSDPDVLIGHRLENISLDVLCHR 620
Score = 40 (19.1 bits), Expect = 6.5e-21, Sum P(3) = 6.5e-21
Identities = 12/48 (25%), Positives = 19/48 (39%)
Query: 145 ISCPQGMGPDDISHFHQILEGRMREANRNSKVPQFVRHIEMVQKRSIM 192
+S P G P D+ H L+ M + S+ P + K I+
Sbjct: 267 VSSPIGAKPTDLPHSDPDLQP-MTSPLKGSETPSYDNFNNKYSKEDIV 313
>UNIPROTKB|A6V6S5 [details] [associations]
symbol:polB "DNA polymerase" species:381754 "Pseudomonas
aeruginosa PA7" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 EMBL:CP000744 GenomeReviews:CP000744_GR
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 HOGENOM:HOG000221829 KO:K02336 ProtClustDB:PRK05762
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
RefSeq:YP_001348760.1 ProteinModelPortal:A6V6S5 SMR:A6V6S5
STRING:A6V6S5 GeneID:5354072 KEGG:pap:PSPA7_3400 PATRIC:19828452
OMA:SATWSFP BioCyc:PAER381754:GHMY-3442-MONOMER Uniprot:A6V6S5
Length = 788
Score = 179 (68.1 bits), Expect = 3.6e-19, Sum P(3) = 3.6e-19
Identities = 74/232 (31%), Positives = 110/232 (47%)
Query: 609 ALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYEHNAEV 668
ALKI N+ YG G++ + ++SS+T G +++ T++L+E + GY V
Sbjct: 494 ALKIIMNAFYGVLGSSGCRFFDPRLASSITLRGHRIMRRTRELIEAE-----GYT----V 544
Query: 669 IYGDTDSVMVQFGVPTVEA-AMKLGREAA--------DYISGTF--IKPIKLEFEKVYYP 717
IYGDTDS V G P E A +GR +++ F ++L+FE Y
Sbjct: 545 IYGDTDSTFVWLGSPHAEEEAAAIGRALVARVNDWWREHLKEEFGLASALELQFETHYRR 604
Query: 718 YLLI--------SKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILV 769
+L+ SKKRYAGL + ++M KG+ETVR D L + E L+ +
Sbjct: 605 FLMPTVRGAEEGSKKRYAGLV-RRADGGEEMVFKGLETVRTDWSPLAQRFQQE-LYLRIF 662
Query: 770 DRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAA-HVELA 820
+R P YV+ + L +D LLV K L + DDY+ HV A
Sbjct: 663 NRQ-PYQ-DYVRDYVRRTLAGELD-DLLVYRKRLRRRLDDYQRNVPPHVRAA 711
Score = 125 (49.1 bits), Expect = 3.6e-19, Sum P(3) = 3.6e-19
Identities = 37/116 (31%), Positives = 55/116 (47%)
Query: 417 AETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQLLR 476
AE + LA Y LKD L R+ + + +E A VTG+P G S+ + L
Sbjct: 325 AEDKPALARYNLKDCELVTRIFARTELLDFLLERATVTGLPAD---RSGGSVAAFTHLYM 381
Query: 477 KAKQK-NLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAY 531
+ V PN+ + E G V+++R G YE + LD+ SLYPSI+ +
Sbjct: 382 PLMHRAGFVAPNLGEKRPEASP--GGFVMDSRPGLYES-VLVLDYKSLYPSIIRTF 434
Score = 63 (27.2 bits), Expect = 3.6e-19, Sum P(3) = 3.6e-19
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 376 FIREVDPDVMIGYNICKFDLPYLIE 400
++ E DPD +IG+N+ +FDL L E
Sbjct: 214 WLAEHDPDAIIGWNLVQFDLRVLHE 238
>UNIPROTKB|Q7SBT9 [details] [associations]
symbol:NCU07870 "DNA polymerase" species:367110 "Neurospora
crassa OR74A" [GO:0000734 "gene conversion at mating-type locus,
DNA repair synthesis" evidence=IBA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=IBA] [GO:0006260 "DNA replication" evidence=IBA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006303 GO:GO:0003887 KO:K02320
eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0005658 HOGENOM:HOG000163524 OrthoDB:EOG4K0TWK GO:GO:0000734
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592 OMA:CASIQGT
EMBL:AABX02000040 RefSeq:XP_963131.2 STRING:Q7SBT9
EnsemblFungi:EFNCRT00000007540 GeneID:3879279 KEGG:ncr:NCU07870
Uniprot:Q7SBT9
Length = 1479
Score = 244 (91.0 bits), Expect = 3.4e-18, Sum P(3) = 3.4e-18
Identities = 102/433 (23%), Positives = 182/433 (42%)
Query: 490 QAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLVTPEDARKLNL 549
+ G ++ Y+G V E G Y+K + +DF SLYPSI+ YN+C++T+ D L+
Sbjct: 842 EGGKKKDKYKGGLVFEPEKGLYDKFVLVMDFNSLYPSIIQEYNICFTTV----DRTSLSE 897
Query: 550 PPECVNKTPSGETFVKSNLQKGXXXXXXXXXXXXXXXXXXXXXXXXXPLEKAVLDGRQLA 609
+ V + P + + L K P E A D +QLA
Sbjct: 898 DDDAVPEVPKEQA--QGILPK----LIATLVSRRRQVKSLMKDKNATPEELATWDIKQLA 951
Query: 610 LKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYEHNAEVI 669
LK++ANS+YG G T + ++ T GR+++ TK+L E V + ++ +I
Sbjct: 952 LKLTANSMYGCLGYTKSRFYARPLAVLTTYKGREILRSTKELAESNSLQVIYGDTDSVMI 1011
Query: 670 YGDTDSVM--VQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLLISKKRYA 727
+ D+V ++ G +A + R I F + I L+ +K Y I+
Sbjct: 1012 NANKDNVAEALRVGHEFKKAVNERYRLLEIDIDNVF-RRILLQAKK---KYAAINMVEVN 1067
Query: 728 GLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQYVKSTISDL 787
G W + +D K E + ++TE L + + +Y++ + +
Sbjct: 1068 GK-WVEKMEVKGLDMKRREYCGLSK-EISNRILTEILSGDDTEVSVQRIHEYLRDISAKM 1125
Query: 788 LMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAK 847
+ + +I+ L K DY + ++ +R+ GD + Y+I +K
Sbjct: 1126 REGAVPVQKYIISTQLGKAPKDYPNADSMPQVQVALRELAKGKTIRKGDVISYIITGDSK 1185
Query: 848 GAK--AYERSEDPIYVL--ENNIPIDTHYYLENQISKPLLRIFEPILKNASKELLS--GD 901
+R+ P VL E+ + D +Y+ QI P+ R+ I+ ++ +L G
Sbjct: 1186 TTSEAVAKRAYTPQDVLKAESGLSPDVEWYIGKQIFPPVERLCANIVGTSTSQLAENLGL 1245
Query: 902 HTRSISISTPSNS 914
R S +T +NS
Sbjct: 1246 DVRRYSSNTNNNS 1258
Score = 67 (28.6 bits), Expect = 3.4e-18, Sum P(3) = 3.4e-18
Identities = 40/182 (21%), Positives = 78/182 (42%)
Query: 237 YESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAKTLSYCQLEFDCLYSDIISRHPEGEF 296
+ +N +F++ NI+G W+++ + + + S+C+LE + +++S E
Sbjct: 479 FGTNTALFEQFVLWKNIMGPCWLKIEDADFT-SLRNASHCKLEVLVEHPNMVSVPDNAES 537
Query: 297 SKMAPFRILSFDIECA----GRKGHFPEPTHDPVIQVANLVTLQGEK---QPFIRNVMTL 349
+ P +LS + A K + + V+ T +K + F V
Sbjct: 538 IEPPPLTLLSLAMRTAFNPKDNKQEILAVSGRVYLDVSLSDTTPPDKLASRSFTA-VRPY 596
Query: 350 KSCAPIVGVDVMSFETERDVLLAWR------DF----IREVDPDVMIGYNICKFDLPYLI 399
S PI G + ++ E R VL ++ +F I VDPDV++G+ + D L+
Sbjct: 597 GSAFPI-GFETLAKERNRGVLKLFKQEHEILNFLLAQIDVVDPDVILGHQLEGVDYSILL 655
Query: 400 EK 401
+
Sbjct: 656 NR 657
Score = 54 (24.1 bits), Expect = 3.4e-18, Sum P(3) = 3.4e-18
Identities = 16/47 (34%), Positives = 19/47 (40%)
Query: 922 RQLSCIGCKALISNGTLCSHCKGREAELYCKTVSQVQELEVLFGRLW 968
RQ+S G + L S G C GR Y T + V F LW
Sbjct: 1361 RQISVYGTRCLGSKGLARGECGGRMRYEY--TERDIYNQLVYFASLW 1405
>UNIPROTKB|A8J9T2 [details] [associations]
symbol:POLA1 "DNA polymerase" species:3055 "Chlamydomonas
reinhardtii" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005658
"alpha DNA polymerase:primase complex" evidence=IBA] [GO:0006260
"DNA replication" evidence=IBA] [GO:0006303 "double-strand break
repair via nonhomologous end joining" evidence=IBA] [GO:0008408
"3'-5' exonuclease activity" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0006297 "nucleotide-excision repair,
DNA gap filling" evidence=IBA] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 Pfam:PF00136 Pfam:PF03104 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0008408 GO:GO:0006303 GO:GO:0003887 KO:K02320 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592 EMBL:DS496147
RefSeq:XP_001698708.1 ProteinModelPortal:A8J9T2
EnsemblPlants:EDO99390 GeneID:5724235 KEGG:cre:CHLREDRAFT_177262
BioCyc:CHLAMY:CHLREDRAFT_177262-MONOMER Uniprot:A8J9T2
Length = 1114
Score = 144 (55.7 bits), Expect = 5.3e-18, Sum P(5) = 5.3e-18
Identities = 40/131 (30%), Positives = 69/131 (52%)
Query: 415 GNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQL 474
G+AE RL + DA+L ++ L + +++ ++G S L+ ++ ++ L
Sbjct: 510 GSAEGVLRLLRHGESDAWLALGIMFHLSVLPLTKQLSALSGQLWSRTLAGQRAGRIEMLL 569
Query: 475 LRKAKQKNLVIPNV-----KQAGSEQGT-YEGATVLEARAGFYEKPIATLDFASLYPSIM 528
L + + ++P+ K A S G Y G VLE + G Y+K + LDF SLYPSI+
Sbjct: 570 LHEFHSRKFIVPDKQSYKSKAAPSGNGPKYAGGLVLEPKKGLYDKIVIILDFNSLYPSII 629
Query: 529 MAYNLCYSTLV 539
YN+C++T +
Sbjct: 630 QEYNICFTTAI 640
Score = 130 (50.8 bits), Expect = 5.3e-18, Sum P(5) = 5.3e-18
Identities = 46/158 (29%), Positives = 81/158 (51%)
Query: 684 TVEA-AMKLGREAADYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDK--- 739
TV+ A LG ++ + K +++E + V+ LL+ KK+YA + P+ +
Sbjct: 678 TVDLEARALGARIKREVNKRY-KLLEIELDGVFKSILLLKKKKYAAVK-LEPDGQGRLAE 735
Query: 740 -MDTKGIETVRRDNCLLVKNLVTECLHKILVDR---DIPGAVQ-YVKSTISDLLMNRMDL 794
M+ KG++ VRRD C L K++ L +L R ++ G + +++ + ++ +
Sbjct: 736 VMEQKGLDIVRRDWCPLSKDVGNFALAAVLSGRGREEVVGEIHAHLRQVAERVRAGQIPM 795
Query: 795 SLLVITKGLTKTGDDY-EVK-AAHVELAERMR---KRD 827
+ITK LTK +DY + K HV++A R R KRD
Sbjct: 796 GKFIITKQLTKRPEDYPDAKNQPHVQVAMRRRAAGKRD 833
Score = 75 (31.5 bits), Expect = 5.3e-18, Sum P(5) = 5.3e-18
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 365 TERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEKEDVHHSI 408
+ER +L ++ +D DV++G+N+ FDL L+ + HH +
Sbjct: 377 SERSLLTCLLARLQSLDADVLVGHNVAAFDLTTLLSRMQ-HHKV 419
Score = 63 (27.2 bits), Expect = 5.3e-18, Sum P(5) = 5.3e-18
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 609 ALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKL 651
A+K++ANS+YG G + ++ +T+ GR ++ T L
Sbjct: 639 AIKLTANSMYGCLGFGASRFYAQPLAELITAQGRSILSSTVDL 681
Score = 38 (18.4 bits), Expect = 5.3e-18, Sum P(5) = 5.3e-18
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 928 GCKALISNGTLCSHCKGREAELYCK 952
GC+A +S+ H +G +C+
Sbjct: 964 GCRAALSHYYRLLHVEGAARRHHCR 988
>DICTYBASE|DDB_G0282191 [details] [associations]
symbol:polA1 "DNA polymerase alpha catalytic subunit"
species:44689 "Dictyostelium discoideum" [GO:0006260 "DNA
replication" evidence=IEA;IBA] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA;IBA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0001882 "nucleoside binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA;ISS] [GO:0003896 "DNA
primase activity" evidence=ISS] [GO:0006273 "lagging strand
elongation" evidence=ISS] [GO:0006272 "leading strand elongation"
evidence=ISS] [GO:0006270 "DNA replication initiation"
evidence=ISS] [GO:0006269 "DNA replication, synthesis of RNA
primer" evidence=ISS] [GO:0005658 "alpha DNA polymerase:primase
complex" evidence=ISS;IBA] [GO:0000731 "DNA synthesis involved in
DNA repair" evidence=ISS] [GO:0006297 "nucleotide-excision repair,
DNA gap filling" evidence=IBA] [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IBA] [GO:0005634 "nucleus"
evidence=IEA;IBA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR015088 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 Pfam:PF08996 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 dictyBase:DDB_G0282191 GO:GO:0000166
GenomeReviews:CM000152_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0051539
GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098 EMBL:AAFI02000046
GO:GO:0008408 GO:GO:0006303 GO:GO:0000731 GO:GO:0003887 KO:K02320
GO:GO:0006273 GO:GO:0006269 GO:GO:0006272 eggNOG:COG0417
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
TIGRFAMs:TIGR00592 OMA:CASIQGT RefSeq:XP_640277.1
ProteinModelPortal:Q54SV8 STRING:Q54SV8 EnsemblProtists:DDB0232274
GeneID:8623451 KEGG:ddi:DDB_G0282191 Uniprot:Q54SV8
Length = 1509
Score = 246 (91.7 bits), Expect = 5.7e-18, Sum P(2) = 5.7e-18
Identities = 124/505 (24%), Positives = 216/505 (42%)
Query: 418 ETRRRLAVYCL---KDAYLPQRLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQL 474
ET ++L ++ D Y+ L+ KL+ ++ + G L ++ ++ L
Sbjct: 793 ETTKKLNIFIEINENDCYIIFLLIFKLLVFPLTKQLTNLAGNQWDKSLKSNRAERIEYLL 852
Query: 475 LRKAKQKNLVIPN-VKQAGSEQG------------TYEGATVLEARAGFYEKPIATLDFA 521
L +K ++P+ + Q S G Y G VL+ + FY++ + LDF
Sbjct: 853 LHNFHEKKYLLPDKIYQKSSSSGGGGGAKDKDNHAAYSGGLVLDPKIDFYDRYVVLLDFN 912
Query: 522 SLYPSIMMAYNLCYSTL--VTPEDAR-KLNLPPECVNKTPSGETFVKSNLQKGXXXXXXX 578
SLYPSI+ YN+C++T+ V +D + + +PP PS +++KG
Sbjct: 913 SLYPSIIQEYNVCFTTINRVKRDDGKWEEAMPP------PS-------SIEKGILPKVLH 959
Query: 579 XXXXXXXXXXXXXXXXXXPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVT 638
+ KA D +Q A+K+ ANS+YG G + + + ++ VT
Sbjct: 960 GLVSKRREIKKRMEQEKNKIIKAQYDIQQQAVKLIANSMYGCLGFSHSRFYALPLAELVT 1019
Query: 639 SYGRQMIEHTKKLVEDK-FTTVGGYEHNAEVIYG-DTDSVMVQFGVPTVEAAMKLGREAA 696
GR+ ++ +V + + G + + G T + G + R +
Sbjct: 1020 RKGRENLQKGASIVNKMCYDVIYGDTDSLMIYTGVGTFNEAETIGKEIQKKINDQYRGSV 1079
Query: 697 DYIS--GTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCL 754
I G F K + L F+K Y L K+ T E+ + KGI+ VRRD C
Sbjct: 1080 MEIGLDGIF-KRLLL-FKKKKYACL---KEFRIDSTTTKCER----ENKGIDIVRRDYCD 1130
Query: 755 LVKNLVTECLHKILVDRD---IPGAV-QYVKSTISDLLMNRMDLSLLVITKGLTKTGDDY 810
L K++ L+ IL + + + +Y++S + N + + +ITK L+K ++Y
Sbjct: 1131 LTKDIGQWVLNLILGGEEKIALFSLIKEYLESVQQQIKDNTLAVEKFIITKTLSKQPEEY 1190
Query: 811 EVK--AAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYE----RSEDPIYVLEN 864
HV++A +MR + P G++VPY+I + E R+ P V E+
Sbjct: 1191 NDADIQPHVQVALQMRAKGLHVQP--GEQVPYIITHGNSSSDIKEEWHHRARAPSDV-ES 1247
Query: 865 NIPIDTHYYLENQISKPLLRIFEPI 889
+D +YL QI + R PI
Sbjct: 1248 IQDVDIDWYLSQQILPSIQRNTGPI 1272
Score = 68 (29.0 bits), Expect = 5.7e-18, Sum P(2) = 5.7e-18
Identities = 16/73 (21%), Positives = 39/73 (53%)
Query: 365 TERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEKED----VHHSIISDLQNGNAETR 420
+ER++L + + + DPDV G+NI +D+ ++++ + + + I L+ + +
Sbjct: 682 SERNLLSFFCETVLNADPDVFAGHNIIGYDIEVILDRLEKLKVMEWAFIGRLKRSSFDRF 741
Query: 421 RRLAVYCLKDAYL 433
++ + D+YL
Sbjct: 742 NHISGRLICDSYL 754
>TIGR_CMR|SO_1820 [details] [associations]
symbol:SO_1820 "DNA polymerase II" species:211586
"Shewanella oneidensis MR-1" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
EMBL:AE014299 GenomeReviews:AE014299_GR SUPFAM:SSF53098
GO:GO:0003887 HOGENOM:HOG000221829 KO:K02336 OMA:VLDGIDW
ProtClustDB:PRK05762 Gene3D:3.90.1600.10 InterPro:IPR023211
HSSP:P21189 RefSeq:NP_717428.1 ProteinModelPortal:Q8EFZ4
GeneID:1169593 KEGG:son:SO_1820 PATRIC:23523263 Uniprot:Q8EFZ4
Length = 808
Score = 222 (83.2 bits), Expect = 8.2e-18, Sum P(2) = 8.2e-18
Identities = 89/314 (28%), Positives = 148/314 (47%)
Query: 609 ALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYEHNAEV 668
A+KI NS+YG G+ +++SS+T G Q+++ T+ +E+ GY+ V
Sbjct: 517 AIKIIMNSLYGVLGSQGCVFHDAKLASSITMRGHQIMKQTRAWIEEM-----GYQ----V 567
Query: 669 IYGDTDSVMVQFGV-PTVEAAMKLGREAADYISGTFIKPI----------KLEFEKVYYP 717
IYGDTDS V G P + LG++ A I+ + I +L+FE+ Y
Sbjct: 568 IYGDTDSTFVHLGYEPDLSDISALGKQIAAQINANWQAKITKDFELESFLELQFERHYEQ 627
Query: 718 YLLI--------SKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILV 769
+ + SKKRY G W N ++ KG+E VR D L + + E ++
Sbjct: 628 FFMPTLRGSEEGSKKRYVGA-WRNVSGELEITFKGMEQVRSDWSPLARKVQAELYERMFN 686
Query: 770 DRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAA-HVELAERMRKRDA 828
RDI G Y+ I +L + D L+ +K + + ++Y K++ HV++A ++ +
Sbjct: 687 QRDISG---YLADVIGELQAGKRD-DELIFSKRMRRNLEEYTAKSSPHVKVARQLCELTG 742
Query: 829 -ATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQI---SKPLLR 884
A+ G ++ YVI G +P V + ID YY++ QI ++P+
Sbjct: 743 KASYSKRGAQIDYVI--TVNGP-------EP--VSHRSSTIDYQYYIDKQIGPIAEPVFS 791
Query: 885 IFEPILKN-ASKEL 897
I + N ASK+L
Sbjct: 792 IMKLNYTNIASKQL 805
Score = 84 (34.6 bits), Expect = 8.2e-18, Sum P(2) = 8.2e-18
Identities = 38/152 (25%), Positives = 68/152 (44%)
Query: 388 YNICKFDLPY----LIEKEDVHHSIISDLQNGNA---ETRRRLAVYCLKDAYLPQRLLDK 440
Y+ +F L + L+ + H + + +Q +A E ++ LA Y L D+ L + +
Sbjct: 308 YHFERFSLEFVAQALLGEGKAIHDVENRVQEIDALFTEDKQSLAHYNLTDSRLVWDIFEH 367
Query: 441 LMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQL-LRKAKQKNLVIPNVKQAGSEQGTYE 499
+ A +TG+ + + G S+ + L L + V P + S+
Sbjct: 368 TQLWDFALARAELTGLELGRV---GASVAAFNHLYLPHLHRAGYVAP--AEPASQGIESP 422
Query: 500 GATVLEARAGFYEKPIATLDFASLYPSIMMAY 531
G V+++ GFY+ I DF SLYPSI+ +
Sbjct: 423 GGYVMDSVPGFYQH-ILVFDFKSLYPSIIRTF 453
Score = 78 (32.5 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
Identities = 31/102 (30%), Positives = 49/102 (48%)
Query: 320 EPTHDPVIQVANLVTLQGEKQPFIRNVMT--LKSCAP--IVGVDVMSFETERDVLLAWRD 375
E + D ++ L + QP+ + +M ++S AP I V + R L+AW
Sbjct: 179 ECSFDGLLYSVALYGRDAQAQPYEKVIMVGEVQSDAPQYIEWVSDEAMLIRR--LIAW-- 234
Query: 376 FIREVDPDVMIGYNICKFDLPYLIEKEDVHHSIISDLQNGNA 417
E DPDV+IG+++ FDL L+ + + H I L G A
Sbjct: 235 -FAEFDPDVIIGWSVVTFDLA-LLYRRALLHRIPLRLGRGGA 274
>UNIPROTKB|Q9KSP4 [details] [associations]
symbol:VC_1212 "DNA polymerase" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
EMBL:AE003852 GenomeReviews:AE003852_GR SUPFAM:SSF53098
GO:GO:0003887 KO:K02336 OMA:VLDGIDW ProtClustDB:PRK05762
Gene3D:3.90.1600.10 InterPro:IPR023211 HSSP:P21189 PIR:E82227
RefSeq:NP_230857.1 ProteinModelPortal:Q9KSP4 DNASU:2614645
GeneID:2614645 KEGG:vch:VC1212 PATRIC:20081512 Uniprot:Q9KSP4
Length = 787
Score = 168 (64.2 bits), Expect = 3.5e-16, Sum P(4) = 3.5e-16
Identities = 80/310 (25%), Positives = 137/310 (44%)
Query: 609 ALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYEHNAEV 668
A+KI NS YG G++ + ++SS+T G +++ TK+L+E + GY+ V
Sbjct: 494 AIKIIMNSFYGVLGSSGCRFFDARLASSITMRGHEIMIQTKRLIEAR-----GYQ----V 544
Query: 669 IYGDTDSVMVQFGVP-TVEAAMKLGREAADYISGTFIKPIK----------LEFEKVYYP 717
IYGDTDS V G + + A +G I+ + + +K LE+E Y
Sbjct: 545 IYGDTDSTFVALGGQYSQQEADNIGHALVREINQWWTEHLKQEYALTSILELEYETHYRR 604
Query: 718 YLLI--------SKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILV 769
+L+ SKKRYAGL +++ KG+E+ R D L + + L++++
Sbjct: 605 FLMPTIRGSETGSKKRYAGLKGDGDN--EQLIFKGLESARTDWTPLAQRFQHQ-LYQLIF 661
Query: 770 DRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAA 829
P + Y+++ + L ++D LV K L + +Y+ A RM D
Sbjct: 662 HGQDPES--YIRTIVEQTLAGQLD-DQLVYQKRLRRRLHEYQKNVPPQVRAARMA--DDI 716
Query: 830 TAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQISKPLLRIFEPI 889
A +G + Y + E Y + PID +Y++ Q+ KP+ P
Sbjct: 717 NA-KLGRPLQYQYRGTIEYVITVNGPEPKEY---SKSPIDYQHYIDKQL-KPVADAILPF 771
Query: 890 LKNASKELLS 899
+ EL++
Sbjct: 772 IGKQFDELIA 781
Score = 99 (39.9 bits), Expect = 3.5e-16, Sum P(4) = 3.5e-16
Identities = 33/135 (24%), Positives = 63/135 (46%)
Query: 400 EKEDVH--HSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVP 457
E + +H H + ++ + LA Y L+D L ++ + ++ +R+TGV
Sbjct: 303 EGKAIHNVHDRMDEINQMFRHDKPSLARYNLQDCVLVNKIFAATHLLDFAIQRSRLTGVE 362
Query: 458 ISFLLSRGQSIKVLSQL-LRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIA 516
+ + G S+ + L L + + V PN++ G V+++ G Y+ +
Sbjct: 363 LDRI---GGSVAAFTNLYLPQLHRAGYVAPNLQPENWVASP--GGYVMDSIPGLYDS-VL 416
Query: 517 TLDFASLYPSIMMAY 531
LDF SLYPSI+ ++
Sbjct: 417 VLDFKSLYPSIIRSF 431
Score = 68 (29.0 bits), Expect = 3.5e-16, Sum P(4) = 3.5e-16
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 370 LLAWRDFIREVDPDVMIGYNICKFDLPYLIEKEDVH 405
L+AW + DPDV+IG+++ FD L ++ + H
Sbjct: 209 LIAW---FEQFDPDVIIGWSVVDFDFRLLHKRAEFH 241
Score = 46 (21.3 bits), Expect = 3.5e-16, Sum P(4) = 3.5e-16
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 203 LKIVVALPTMVASCRGILDRGIQLDGLGMKSFMTYESNVLFALRFMIDCNIVG 255
L+ P C I D I + L + E+++ A RF+++ I G
Sbjct: 72 LRSFAGQPLAACYCNTIRDSQILAEKLAQADMLILEADIRLADRFLMERFIQG 124
>TIGR_CMR|VC_1212 [details] [associations]
symbol:VC_1212 "DNA polymerase II" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR
SUPFAM:SSF53098 GO:GO:0003887 KO:K02336 OMA:VLDGIDW
ProtClustDB:PRK05762 Gene3D:3.90.1600.10 InterPro:IPR023211
HSSP:P21189 PIR:E82227 RefSeq:NP_230857.1 ProteinModelPortal:Q9KSP4
DNASU:2614645 GeneID:2614645 KEGG:vch:VC1212 PATRIC:20081512
Uniprot:Q9KSP4
Length = 787
Score = 168 (64.2 bits), Expect = 3.5e-16, Sum P(4) = 3.5e-16
Identities = 80/310 (25%), Positives = 137/310 (44%)
Query: 609 ALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYEHNAEV 668
A+KI NS YG G++ + ++SS+T G +++ TK+L+E + GY+ V
Sbjct: 494 AIKIIMNSFYGVLGSSGCRFFDARLASSITMRGHEIMIQTKRLIEAR-----GYQ----V 544
Query: 669 IYGDTDSVMVQFGVP-TVEAAMKLGREAADYISGTFIKPIK----------LEFEKVYYP 717
IYGDTDS V G + + A +G I+ + + +K LE+E Y
Sbjct: 545 IYGDTDSTFVALGGQYSQQEADNIGHALVREINQWWTEHLKQEYALTSILELEYETHYRR 604
Query: 718 YLLI--------SKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILV 769
+L+ SKKRYAGL +++ KG+E+ R D L + + L++++
Sbjct: 605 FLMPTIRGSETGSKKRYAGLKGDGDN--EQLIFKGLESARTDWTPLAQRFQHQ-LYQLIF 661
Query: 770 DRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAA 829
P + Y+++ + L ++D LV K L + +Y+ A RM D
Sbjct: 662 HGQDPES--YIRTIVEQTLAGQLD-DQLVYQKRLRRRLHEYQKNVPPQVRAARMA--DDI 716
Query: 830 TAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQISKPLLRIFEPI 889
A +G + Y + E Y + PID +Y++ Q+ KP+ P
Sbjct: 717 NA-KLGRPLQYQYRGTIEYVITVNGPEPKEY---SKSPIDYQHYIDKQL-KPVADAILPF 771
Query: 890 LKNASKELLS 899
+ EL++
Sbjct: 772 IGKQFDELIA 781
Score = 99 (39.9 bits), Expect = 3.5e-16, Sum P(4) = 3.5e-16
Identities = 33/135 (24%), Positives = 63/135 (46%)
Query: 400 EKEDVH--HSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVP 457
E + +H H + ++ + LA Y L+D L ++ + ++ +R+TGV
Sbjct: 303 EGKAIHNVHDRMDEINQMFRHDKPSLARYNLQDCVLVNKIFAATHLLDFAIQRSRLTGVE 362
Query: 458 ISFLLSRGQSIKVLSQL-LRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIA 516
+ + G S+ + L L + + V PN++ G V+++ G Y+ +
Sbjct: 363 LDRI---GGSVAAFTNLYLPQLHRAGYVAPNLQPENWVASP--GGYVMDSIPGLYDS-VL 416
Query: 517 TLDFASLYPSIMMAY 531
LDF SLYPSI+ ++
Sbjct: 417 VLDFKSLYPSIIRSF 431
Score = 68 (29.0 bits), Expect = 3.5e-16, Sum P(4) = 3.5e-16
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 370 LLAWRDFIREVDPDVMIGYNICKFDLPYLIEKEDVH 405
L+AW + DPDV+IG+++ FD L ++ + H
Sbjct: 209 LIAW---FEQFDPDVIIGWSVVDFDFRLLHKRAEFH 241
Score = 46 (21.3 bits), Expect = 3.5e-16, Sum P(4) = 3.5e-16
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 203 LKIVVALPTMVASCRGILDRGIQLDGLGMKSFMTYESNVLFALRFMIDCNIVG 255
L+ P C I D I + L + E+++ A RF+++ I G
Sbjct: 72 LRSFAGQPLAACYCNTIRDSQILAEKLAQADMLILEADIRLADRFLMERFIQG 124
>UNIPROTKB|P95979 [details] [associations]
symbol:dpo3 "DNA polymerase 3" species:273057 "Sulfolobus
solfataricus P2" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
Pfam:PF00136 Pfam:PF03104 PROSITE:PS00116 SMART:SM00486
GO:GO:0005694 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
SUPFAM:SSF53098 EMBL:AE006641 GenomeReviews:AE006641_GR
GO:GO:0008408 GO:GO:0003887 GO:GO:0006297 eggNOG:COG0417
GO:GO:0019985 OMA:RSFRPYF KO:K02319 EMBL:Y08257 PIR:S75407
RefSeq:NP_341651.1 ProteinModelPortal:P95979 PRIDE:P95979
GeneID:1455332 KEGG:sso:SSO0081 HOGENOM:HOG000222650
ProtClustDB:CLSK2484407 Uniprot:P95979
Length = 764
Score = 155 (59.6 bits), Expect = 2.1e-15, Sum P(5) = 2.1e-15
Identities = 46/178 (25%), Positives = 90/178 (50%)
Query: 713 KVYYPYLLI-SKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDR 771
K++Y LL+ RYAGL + +K D + KG E + C L +N+ + + +IL+ +
Sbjct: 573 KIFYKSLLVLDNNRYAGL--SEGDKID-IARKGEEDMNL--CELARNIKRKIIEEILISK 627
Query: 772 DIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATA 831
D+ A++ VKST+ L D L+ + + ++Y + V A + + +
Sbjct: 628 DVKKAIKLVKSTVIKLRRGEFDNEELITWAKIERDLNEYNNQLPFVTAARKAIQSGYLIS 687
Query: 832 PNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQISKPLLRIFEPI 889
+ ++ YVI+K +R+E P ++++ ID YY++ QI + L++ +P+
Sbjct: 688 KD--SKIGYVIVKGL--GPLNDRAE-PFFLVKEKNRIDIEYYVD-QIFRETLKLLKPL 739
Score = 97 (39.2 bits), Expect = 2.1e-15, Sum P(5) = 2.1e-15
Identities = 33/153 (21%), Positives = 69/153 (45%)
Query: 416 NAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQLL 475
N + RR + Y +++A L + L+ Y E+ ++ G+P+ L ++ + L+
Sbjct: 324 NEKNRRIIREYSIENARSIYLLGNYLLS--TYSELVKIVGLPLDKLSVASWGNRIETSLI 381
Query: 476 RKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCY 535
R A + +IP + + +++ + G Y + LD +S+Y ++ +N+
Sbjct: 382 RTATKSGELIPIRMDNPNRPSKIKKNIIIQPKVGIYTD-VYVLDISSVYSLVIRKFNIAP 440
Query: 536 STLVTPE--DARKLNLPPECVNKTPSG--ETFV 564
TLV + D + + PSG +TF+
Sbjct: 441 DTLVKEQCDDCYSSPISNYKFKREPSGLYKTFL 473
Score = 62 (26.9 bits), Expect = 2.1e-15, Sum P(5) = 2.1e-15
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 99 DYVIGDSNRELLPLSSGSAAIIRIFGVTREGHSVCCKVHGFEPYFYI 145
D+ I D + E+ G+ ++ I+ V EG+S + F PYFYI
Sbjct: 4 DFFILDFSYEI----KGNTPLVYIWSVDDEGNSSVVIDNNFRPYFYI 46
Score = 55 (24.4 bits), Expect = 2.1e-15, Sum P(5) = 2.1e-15
Identities = 16/99 (16%), Positives = 39/99 (39%)
Query: 169 EANRNSKVPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDG 228
E N N + ++ E +Q + L I + PT + CR + + G
Sbjct: 49 EGNENEIIENIKKNCEALQITKVKRKYLGNIVDALLIQTSTPTQIKKCREKISELNNIKG 108
Query: 229 LGMKSFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYR 267
+ +++++ + +R+ +D ++ W V + +
Sbjct: 109 I-------FDADIRYTMRYSLDFDLRPFTWFRAEVNEVK 140
Score = 44 (20.5 bits), Expect = 2.1e-15, Sum P(5) = 2.1e-15
Identities = 20/89 (22%), Positives = 39/89 (43%)
Query: 315 KGHFPE-PTHDPVIQV-ANLVTLQGEKQPFIRNVMTLKSCAPIVGVDVMSFETERDVLLA 372
+G+ PE T Q+ + +L K P + VM+L S + + + ++
Sbjct: 160 EGNMPELRTIGVDFQIYSKYGSLNPRKDPIV--VMSLWSKEGPMQFSLDEGIDDLKIIRR 217
Query: 373 WRDFIREVDPDVMIGYNICKFDLPYLIEK 401
+ D+I DPD++ Y+ Y+ E+
Sbjct: 218 FVDYILNYDPDIIFVYDSDLLPWKYITER 246
>TAIR|locus:2028496 [details] [associations]
symbol:AT1G49180 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004672
"protein kinase activity" evidence=IEA] [GO:0004674 "protein
serine/threonine kinase activity" evidence=IEA] [GO:0004713
"protein tyrosine kinase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006468 "protein phosphorylation" evidence=IEA]
[GO:0016301 "kinase activity" evidence=ISS] [GO:0016772
"transferase activity, transferring phosphorus-containing groups"
evidence=IEA] InterPro:IPR000719 InterPro:IPR002290
InterPro:IPR008271 InterPro:IPR011009 InterPro:IPR012337
Pfam:PF00069 PROSITE:PS00108 PROSITE:PS50011 SMART:SM00220
EMBL:CP002684 GO:GO:0005524 SUPFAM:SSF56112 GO:GO:0004674
GO:GO:0003676 SUPFAM:SSF53098 IPI:IPI00535763 RefSeq:NP_175344.2
UniGene:At.38286 ProteinModelPortal:F4I1N8 SMR:F4I1N8 PRIDE:F4I1N8
EnsemblPlants:AT1G49180.1 GeneID:841341 KEGG:ath:AT1G49180
OMA:APEVLQF Uniprot:F4I1N8
Length = 408
Score = 220 (82.5 bits), Expect = 7.9e-15, P = 7.9e-15
Identities = 53/97 (54%), Positives = 66/97 (68%)
Query: 394 DLPYL--IEKEDV--HHSIISDLQNGNAETR-----RRLAVYCLKDAYLPQRLLDKLMFI 444
D P+L I+ V + S Q+G E + RL +DAYLPQRLL+ LM+I
Sbjct: 258 DFPFLGRIKNSRVWVKDTTFSSRQHGTRERKVATINGRLQFDLSQDAYLPQRLLENLMYI 317
Query: 445 FNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQK 481
+N +EMARVTGVP S+L+SRG+SIKVLSQLLRKAKQK
Sbjct: 318 YNTIEMARVTGVPTSYLISRGESIKVLSQLLRKAKQK 354
>UNIPROTKB|P26811 [details] [associations]
symbol:dpo1 "DNA polymerase 1" species:273057 "Sulfolobus
solfataricus P2" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098 EMBL:AE006641
GenomeReviews:AE006641_GR GO:GO:0008408 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
EMBL:X64466 EMBL:U92875 EMBL:Y18930 PIR:F90201 PIR:S23019
RefSeq:NP_342079.1 PDB:1S5J PDBsum:1S5J ProteinModelPortal:P26811
SMR:P26811 DIP:DIP-48850N GeneID:1454836 KEGG:sso:SSO0552
HOGENOM:HOG000108124 KO:K02319 OMA:HKPYFLT ProtClustDB:PRK05761
EvolutionaryTrace:P26811 Uniprot:P26811
Length = 882
Score = 175 (66.7 bits), Expect = 5.4e-14, Sum P(2) = 5.4e-14
Identities = 95/373 (25%), Positives = 151/373 (40%)
Query: 487 NVKQAGSEQGT-YEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLVTPEDAR 545
N++ + +G Y+GA V++ AG + I LDFASLYPSI+ +NL Y T+ D +
Sbjct: 482 NIRTSALIKGKGYKGAVVIDPPAGIFFN-ITVLDFASLYPSIIRTWNLSYETV----DIQ 536
Query: 546 KLNLPPECVNKTPSGETF-VKSNLQKGXXXXXXXXXXXXXXXXXXXXXXXXXPLE--KAV 602
+ P E ++T GE + + G E K +
Sbjct: 537 QCKKPYEVKDET--GEVLHIVCMDRPGITAVITGLLRDFRVKIYKKKAKNPNNSEEQKLL 594
Query: 603 LDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGY 662
D Q A+K+ N+ YG GA L ++ SVT+ GR +I T K ++ TV
Sbjct: 595 YDVVQRAMKVFINATYGVFGAETFPLYAPAVAESVTALGRYVITSTVKKAREEGLTV--- 651
Query: 663 EHNAEVIYGDTDSVMVQFGVP--TVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLL 720
+YGDTDS+ + P ++E +K ++ TF ++++ + +
Sbjct: 652 ------LYGDTDSLFL-LNPPKNSLENIIK-------WVKTTFNLDLEVDKTYKFVAFSG 697
Query: 721 ISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLL--VKNLVTECLHKILVDRDIPGAVQ 778
+ KK Y G+Y M K T + VK L+ V V
Sbjct: 698 L-KKNYFGVYQDGKVDIKGMLVKKRNTPEFVKKVFNEVKELMISINSPNDVKEIKRKIVD 756
Query: 779 YVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAA-HVELAERMRKRDAATAPNVGDR 837
VK + L +L L L+K D Y+ HV+ A ++R P D
Sbjct: 757 VVKGSYEKLKNKGYNLDELAFKVMLSKPLDAYKKNTPQHVKAALQLRPFGVNVLPR--DI 814
Query: 838 VPYVIIKAAKGAK 850
+ YV +++ G K
Sbjct: 815 IYYVKVRSKDGVK 827
Score = 97 (39.2 bits), Expect = 5.4e-14, Sum P(2) = 5.4e-14
Identities = 61/247 (24%), Positives = 106/247 (42%)
Query: 169 EANRNSKVPQFVR-----HIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRG 223
E ++ K+P+ VR HIE V K I Y K + KIVV P V R + +
Sbjct: 95 EPDKVGKIPKIVRDPSFDHIETVSK--IDPYTWNKFK-LTKIVVRDPLAVRRLRNDVPKA 151
Query: 224 IQLDGLGMKSFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAKTLSYCQLE-FDC 282
YE+++ + +M D ++ G V GK +L +E
Sbjct: 152 -------------YEAHIKYFNNYMYDIGLIPGMPYVVKNGKLESVYLSLDEKDVEEIKK 198
Query: 283 LY--SDIISRHPEGEF-----SKMAPFRILSFDIEC-AGRKGHFPEP--THDPVIQVANL 332
+ SD ++R ++ +++ + ++ DIE KG P+ P+I +A L
Sbjct: 199 AFADSDEMTRQMAVDWLPIFETEIPKIKRVAIDIEVYTPVKGRIPDSQKAEFPIISIA-L 257
Query: 333 VTLQGEKQPFIRNVMTL-KSCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNIC 391
G K+ + N + + + G+ V F TE ++L + D + E P +++ +N
Sbjct: 258 AGSDGLKKVLVLNRNDVNEGSVKLDGISVERFNTEYELLGRFFDILLEY-P-IVLTFNGD 315
Query: 392 KFDLPYL 398
FDLPY+
Sbjct: 316 DFDLPYI 322
Score = 38 (18.4 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 479 KQKNLV-IPNVKQAGSEQGTYE 499
KQ L IP+ K A SEQ T +
Sbjct: 3 KQLTLFDIPSSKPAKSEQNTQQ 24
>UNIPROTKB|I3LER4 [details] [associations]
symbol:I3LER4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006260 "DNA replication" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR006134 InterPro:IPR012337 Pfam:PF00136
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0003887 GeneTree:ENSGT00550000074640 EMBL:CU915528
Ensembl:ENSSSCT00000026918 Uniprot:I3LER4
Length = 127
Score = 177 (67.4 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 40/104 (38%), Positives = 60/104 (57%)
Query: 436 RLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNL--VIPNVKQAGS 493
++L++L I EMAR+ G+ +L+RG +V S +LR AK N V P+V+Q
Sbjct: 14 QMLEQLDLIGKTSEMARLFGIQFLHVLTRGSQYRVESMMLRIAKPMNYIPVTPSVQQRSQ 73
Query: 494 EQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYST 537
+ ++E + FY + LDF SLYPSI++AYN C+ST
Sbjct: 74 MRAPQCVPLIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFST 117
>TAIR|locus:2059314 [details] [associations]
symbol:TIL2 "TILTED 2" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008622 "epsilon
DNA polymerase complex" evidence=IPI] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR013697 Pfam:PF00136 Pfam:PF03104 Pfam:PF08490
SMART:SM00486 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0008270
GO:GO:0051539 SUPFAM:SSF53098 EMBL:AC005623 GO:GO:0008622
GO:GO:0003887 eggNOG:COG0417 HSSP:Q56366 KO:K02324 IPI:IPI00548662
PIR:A84669 RefSeq:NP_180280.2 UniGene:At.52932
EnsemblPlants:AT2G27120.1 GeneID:817254 KEGG:ath:AT2G27120
TAIR:At2g27120 OMA:RITTTEC Uniprot:F4IFN6
Length = 2138
Score = 120 (47.3 bits), Expect = 4.9e-08, Sum P(4) = 4.9e-08
Identities = 78/347 (22%), Positives = 147/347 (42%)
Query: 120 IRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANRNSKVPQF 179
+ +F VT++G S K + F PY Y + M + ++ + E ++ + K +
Sbjct: 60 VDLFFVTQDGSSFKTK-YKFRPYLYAATKDNMELEVEAYLRRRYERQVADIQIVHKEDLY 118
Query: 180 VR-HIEMVQKR----SIMYYQQ--QKSQPFLKIV---VALPTMVASCRGILD-RGIQLDG 228
++ H+ +QK+ S QQ + + L IV +A + + IL + Q
Sbjct: 119 LKNHLSGLQKKYLKVSFDTVQQLVEVKRDLLHIVERNLAKFNALEAYESILSGKREQRPQ 178
Query: 229 LGMKSFMTY-ESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAKTLSYCQLEFDCLYSDI 287
+ S + E +V + +RF ID ++ G W V + +D+
Sbjct: 179 DCLDSVVDLREYDVPYHVRFAIDNDVRSGQWYNVSISS-------------------TDV 219
Query: 288 ISRHPEGEFSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQVANLVTLQG----EKQPFI 343
I + + A R+ +FDIE FP+ +D ++ ++ +V QG ++
Sbjct: 220 ILEK-RTDLLQRAEVRVCAFDIETVKLPLKFPDAEYDQIMMISYMVDGQGFLITNRECVG 278
Query: 344 RNVMTLK-SCAP-IVGV-DVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIE 400
+++ L+ + P G V + E ++L W ++E+ P + + YN FD P+ IE
Sbjct: 279 KDIEDLEYTPKPEFEGYFKVTNVTNEVELLRKWFSHMQELKPGIYVTYNGDFFDWPF-IE 337
Query: 401 KEDVHHSIISDLQNG------NAETRRRLAVY--CL----KDAYLPQ 435
+ HH I + + G E R + + C +D+YLPQ
Sbjct: 338 RRASHHGIKMNEELGFRCDQNQGECRAKFVCHLDCFSWVKRDSYLPQ 384
Score = 75 (31.5 bits), Expect = 4.9e-08, Sum P(4) = 4.9e-08
Identities = 44/168 (26%), Positives = 74/168 (44%)
Query: 720 LISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIP---GA 776
++ KKRYA + + ++ KG E RR L+K E K L + A
Sbjct: 913 ILIKKRYA--VFNHDGTIAEL--KGFEMKRRGELKLIKVFQAELFDKFLHGSTLEECYSA 968
Query: 777 VQYVKSTISDLLMNR----MDLSLL-VITKGLT--KTGDDY-EVKAAHVELAERMRKRDA 828
V V + DLL + D LL I++ T K+ DY + K+ V A+R+
Sbjct: 969 VAAVANRWLDLLEGQGKDIADSELLDYISESSTMSKSLADYGQQKSCAVTTAKRLADFLG 1028
Query: 829 AT-APNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLE 875
T + G R Y++ + +G ER+ P+ + + + P + +YL+
Sbjct: 1029 DTMVKDKGLRCQYIVAREPEGTPVSERAV-PVAIFQTDDP-EKKFYLQ 1074
Score = 67 (28.6 bits), Expect = 4.9e-08, Sum P(4) = 4.9e-08
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 602 VLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVE 653
V D QLA K NS YG+ + +E++ VT G ++I++ + L+E
Sbjct: 765 VYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIE 816
Score = 59 (25.8 bits), Expect = 4.9e-08, Sum P(4) = 4.9e-08
Identities = 33/124 (26%), Positives = 54/124 (43%)
Query: 418 ETRRRLAVYCLKDAYLPQRLLDKLMFIFNYV-EMARVTGVPISFLLSRGQSIKVLSQLLR 476
E + +A Y + DA L + ++ +V +A + + +L +G L+
Sbjct: 415 EKPQTMASYSVSDAVATYYLY--MTYVHPFVFSLATIIPMVPDEVLRKGSGTLCEMLLMV 472
Query: 477 KAKQKNLVIPNVKQAGSE---QG------TYEGATVLEARAGFYEKPIAT---LDFASLY 524
+A + N+V PN QA E QG TY G V ++G + I T LD AS Y
Sbjct: 473 EAYKANVVCPNKNQADPEKFYQGKLLESETYIGGHVECLQSGVFRSDIPTSFKLD-ASAY 531
Query: 525 PSIM 528
++
Sbjct: 532 QQLI 535
Score = 54 (24.1 bits), Expect = 1.5e-07, Sum P(4) = 1.5e-07
Identities = 23/63 (36%), Positives = 32/63 (50%)
Query: 512 EKP-IATLDFASLYPSIMMAYNLCYSTLVTPE--DARKLNLPPE-CVNKTP---SGETFV 564
E P I LD A++YP+I++ L ++VT E A N P + C+ K G TF
Sbjct: 582 EGPLIYHLDVAAMYPNIILTNRLQPPSIVTDEVCTACDFNGPEKTCLRKLEWVWRGVTF- 640
Query: 565 KSN 567
K N
Sbjct: 641 KGN 643
Score = 54 (24.1 bits), Expect = 5.4e-06, Sum P(4) = 5.4e-06
Identities = 21/72 (29%), Positives = 33/72 (45%)
Query: 666 AEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGT--FIKPIKLEFEKVYYPYLLISK 723
A +IY D V++ G + AA K E+ + G+ K I LE ++ L + +
Sbjct: 1784 AIIIYADFSKVIIDTGKFDLSAA-KTYCESLLTVMGSRDIFKLILLEPVHYWHSLLFMDQ 1842
Query: 724 KRYAGLYWTNPE 735
YAG+ T E
Sbjct: 1843 HNYAGIRATGDE 1854
Score = 37 (18.1 bits), Expect = 0.00023, Sum P(4) = 0.00023
Identities = 18/61 (29%), Positives = 24/61 (39%)
Query: 893 ASKELL---SGDHTRSISIST--PSNSGIMKFAKRQLSCIGCKALISNGTLCSHCKGREA 947
A ELL S T S S++ S + AKR +G + G C + RE
Sbjct: 988 ADSELLDYISESSTMSKSLADYGQQKSCAVTTAKRLADFLGDTMVKDKGLRCQYIVAREP 1047
Query: 948 E 948
E
Sbjct: 1048 E 1048
>UNIPROTKB|Q747M0 [details] [associations]
symbol:GSU3245 "DNA polymerase" species:243231 "Geobacter
sulfurreducens PCA" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005694 "chromosome" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 Pfam:PF00136 Pfam:PF03104 SMART:SM00486
GO:GO:0005694 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
EMBL:AE017180 GenomeReviews:AE017180_GR SUPFAM:SSF53098
GO:GO:0008408 GO:GO:0003887 GO:GO:0006297 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 RefSeq:NP_954286.1
ProteinModelPortal:Q747M0 GeneID:2686404 KEGG:gsu:GSU3245
PATRIC:22029333 HOGENOM:HOG000147542 OMA:EVDTDGI
ProtClustDB:CLSK813582 BioCyc:GSUL243231:GH27-3221-MONOMER
Uniprot:Q747M0
Length = 745
Score = 94 (38.1 bits), Expect = 7.3e-07, Sum P(3) = 7.3e-07
Identities = 67/290 (23%), Positives = 114/290 (39%)
Query: 607 QLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYEHNA 666
Q K+ NS YG+ GA + ++ VT GRQ+I ++D+ A
Sbjct: 470 QQTFKVLINSFYGYLGAPLHHFADPAAAAEVTRAGRQLIGAMLDWLQDR---------GA 520
Query: 667 EVIYGDTDSV--MVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLLISKK 724
+ DTD V + GV EA L R +S T I++E Y K
Sbjct: 521 RPVEVDTDGVYFIPPPGVSGEEAESALVRA----LSATLPAGIEVELAGRYRAMFSYKAK 576
Query: 725 RYAGLYWTN--PEKFDKMDTKGIETVRRDNC-LLVKNLVTECLHKILVDRDIPGAVQYVK 781
YA L + + ++GIE R+ +++ L+T+ K+ V D YV
Sbjct: 577 NYALLGHDGRITVRGSALRSRGIERYLREFMGEMIRLLLTDEAQKVPVLYD-----DYVH 631
Query: 782 STISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAP-NVGDRVPY 840
++ + T G + +V+A + A P GD++ Y
Sbjct: 632 RIREHRFP--VEWLVRTETLGESPATYQQKVRAGKRNPSAAFEIALRADRPYRAGDQISY 689
Query: 841 VIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQISKPLLRIFEPIL 890
+ KG YE+S P++ + P + Y +++++ L++ F P L
Sbjct: 690 YVTGRGKGVTVYEQSA-PVFRYDPARPDENVDYYVDKLAQ-LMKKFAPFL 737
Score = 83 (34.3 bits), Expect = 7.3e-07, Sum P(3) = 7.3e-07
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 366 ERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEKEDVHHSI 408
ER++L IRE DPDV+ G+NI +FDL Y I H +
Sbjct: 188 EREMLERLGGIIRERDPDVIEGHNIFRFDLEY-IRARAARHGV 229
Score = 72 (30.4 bits), Expect = 7.3e-07, Sum P(3) = 7.3e-07
Identities = 22/67 (32%), Positives = 31/67 (46%)
Query: 464 RGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASL 523
RG + K+ + LR+ + +P G + EG V E R PI D SL
Sbjct: 360 RGNATKINALFLREYLHRREAVP--LPGGGDGAGLEGGYV-ELRETGILGPIVHCDVTSL 416
Query: 524 YPSIMMA 530
YPS+M+A
Sbjct: 417 YPSLMLA 423
>TIGR_CMR|GSU_3245 [details] [associations]
symbol:GSU_3245 "DNA polymerase II, putative"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
Pfam:PF00136 Pfam:PF03104 SMART:SM00486 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887 GO:GO:0006297
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
RefSeq:NP_954286.1 ProteinModelPortal:Q747M0 GeneID:2686404
KEGG:gsu:GSU3245 PATRIC:22029333 HOGENOM:HOG000147542 OMA:EVDTDGI
ProtClustDB:CLSK813582 BioCyc:GSUL243231:GH27-3221-MONOMER
Uniprot:Q747M0
Length = 745
Score = 94 (38.1 bits), Expect = 7.3e-07, Sum P(3) = 7.3e-07
Identities = 67/290 (23%), Positives = 114/290 (39%)
Query: 607 QLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYEHNA 666
Q K+ NS YG+ GA + ++ VT GRQ+I ++D+ A
Sbjct: 470 QQTFKVLINSFYGYLGAPLHHFADPAAAAEVTRAGRQLIGAMLDWLQDR---------GA 520
Query: 667 EVIYGDTDSV--MVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLLISKK 724
+ DTD V + GV EA L R +S T I++E Y K
Sbjct: 521 RPVEVDTDGVYFIPPPGVSGEEAESALVRA----LSATLPAGIEVELAGRYRAMFSYKAK 576
Query: 725 RYAGLYWTN--PEKFDKMDTKGIETVRRDNC-LLVKNLVTECLHKILVDRDIPGAVQYVK 781
YA L + + ++GIE R+ +++ L+T+ K+ V D YV
Sbjct: 577 NYALLGHDGRITVRGSALRSRGIERYLREFMGEMIRLLLTDEAQKVPVLYD-----DYVH 631
Query: 782 STISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAP-NVGDRVPY 840
++ + T G + +V+A + A P GD++ Y
Sbjct: 632 RIREHRFP--VEWLVRTETLGESPATYQQKVRAGKRNPSAAFEIALRADRPYRAGDQISY 689
Query: 841 VIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQISKPLLRIFEPIL 890
+ KG YE+S P++ + P + Y +++++ L++ F P L
Sbjct: 690 YVTGRGKGVTVYEQSA-PVFRYDPARPDENVDYYVDKLAQ-LMKKFAPFL 737
Score = 83 (34.3 bits), Expect = 7.3e-07, Sum P(3) = 7.3e-07
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 366 ERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEKEDVHHSI 408
ER++L IRE DPDV+ G+NI +FDL Y I H +
Sbjct: 188 EREMLERLGGIIRERDPDVIEGHNIFRFDLEY-IRARAARHGV 229
Score = 72 (30.4 bits), Expect = 7.3e-07, Sum P(3) = 7.3e-07
Identities = 22/67 (32%), Positives = 31/67 (46%)
Query: 464 RGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASL 523
RG + K+ + LR+ + +P G + EG V E R PI D SL
Sbjct: 360 RGNATKINALFLREYLHRREAVP--LPGGGDGAGLEGGYV-ELRETGILGPIVHCDVTSL 416
Query: 524 YPSIMMA 530
YPS+M+A
Sbjct: 417 YPSLMLA 423
>GENEDB_PFALCIPARUM|PFF1470c [details] [associations]
symbol:PFF1470c "DNA polymerase epsilon,
catalytic subunit a, putative" species:5833 "Plasmodium falciparum"
[GO:0008622 "epsilon DNA polymerase complex" evidence=ISS]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006261 "DNA-dependent DNA replication" evidence=ISS]
InterPro:IPR006133 InterPro:IPR006172 InterPro:IPR012337
Pfam:PF03104 SMART:SM00486 GO:GO:0000166 GO:GO:0003676
GO:GO:0006261 SUPFAM:SSF53098 EMBL:AL844505 GO:GO:0008622
GO:GO:0003887 KO:K02324 RefSeq:XP_966285.1
ProteinModelPortal:C6KTD8 IntAct:C6KTD8 PRIDE:C6KTD8
EnsemblProtists:PFF1470c:mRNA GeneID:3885768 KEGG:pfa:PFF1470c
EuPathDB:PlasmoDB:PF3D7_0630300 HOGENOM:HOG000281650
ProtClustDB:CLSZ2432328 Uniprot:C6KTD8
Length = 2907
Score = 110 (43.8 bits), Expect = 1.2e-06, Sum P(6) = 1.2e-06
Identities = 45/183 (24%), Positives = 80/183 (43%)
Query: 237 YESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAKTLSYCQLEFDCLYSDIISRHPEGEF 296
YE +V + R ID NI G W +V + E D LY+++I +
Sbjct: 289 YEYDVKYLTRICIDKNIRCGLWYKV---------------KREEDELYTELIQFEILNK- 332
Query: 297 SKMAPFRILSFDIECAGRKGHFPEPTHDPVIQVANLVTLQG----EKQPFIRNVMTL--K 350
+AP IL++DIEC + FP+ D +I ++ + QG + +N+ K
Sbjct: 333 KVLAPLNILAWDIECYKDELKFPDKEKDEIILISYMYNAQGYLIVNRNVMSKNIREFLYK 392
Query: 351 SCAPIVGVDVMSFETERD---VLLAWRDFIREVDPDVMIGYNICKFDLPYLIEKEDVHHS 407
G E++ +L + + IR + + + YN FD+PYL + ++++
Sbjct: 393 PNEEYSGAGTFKIFNEKNEYFLLKRFLEHIRLLKIHIFVTYNGDFFDIPYLYRRCEINNL 452
Query: 408 IIS 410
+S
Sbjct: 453 SVS 455
Score = 79 (32.9 bits), Expect = 1.2e-06, Sum P(6) = 1.2e-06
Identities = 28/101 (27%), Positives = 49/101 (48%)
Query: 389 NICKFDLPYLIEKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYV 448
++CK L Y +V ++ + N + LAVY + DA L DK FI N++
Sbjct: 497 SVCKIKLKY--NPTEVDPELMVPIAKNNPQ---HLAVYSVSDAVATFYLYDK--FIHNFL 549
Query: 449 EMARVTGVPIS--FLLSRGQSIKVLSQLLRKAKQKNLVIPN 487
A + +P++ +L +G L+ +A +KN++ PN
Sbjct: 550 -FALSSIIPMNPDNVLRQGSGTLCEQLLMAEAYRKNILFPN 589
Score = 59 (25.8 bits), Expect = 1.2e-06, Sum P(6) = 1.2e-06
Identities = 9/25 (36%), Positives = 20/25 (80%)
Query: 518 LDFASLYPSIMMAYNLCYSTLVTPE 542
LD A++YP+I++++ L + ++TP+
Sbjct: 711 LDVAAMYPNIILSHRLQPNAIITPD 735
Score = 55 (24.4 bits), Expect = 1.2e-06, Sum P(6) = 1.2e-06
Identities = 38/194 (19%), Positives = 83/194 (42%)
Query: 723 KKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQYVKS 782
KKRY + + N K ++ KG E RR +++ +E + L + + +
Sbjct: 1083 KKRY--VVFNNKYKISEL--KGFEIKRRGELRIIQRFQSEIFNHFLKGKTKEESYYHASL 1138
Query: 783 TIS---DLLMNR-MDLS-------LLVITKGLTKTGDDY-EVKAAHVELAERMRK--RDA 828
T + +L+ + +D+ L++ K L K+ + K+ + A+R+ + +A
Sbjct: 1139 TANKWKNLIDTKAIDIDNDDELFDLILAKKVLNKSVKEQPNAKSFGITTAKRLSELLNNA 1198
Query: 829 ATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQISKPLLRIFEP 888
+ + ++++ G+ R+ PI + + NI HY +SK L F P
Sbjct: 1199 SYIEDNNVSTQFIVVSKPIGSDITFRAI-PIQIFKTNIDTQIHY-----LSKWLGTKFPP 1252
Query: 889 ILKNASKELLSGDH 902
+ ++++ D+
Sbjct: 1253 NVPVNVRDIIDWDY 1266
Score = 52 (23.4 bits), Expect = 1.2e-06, Sum P(6) = 1.2e-06
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 599 EKAVL-DGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLV 652
+K +L D QLA K NS YG+ + ++ + VT G Q+I L+
Sbjct: 906 DKILLNDSLQLAHKCILNSFYGYVKRRSSRWYSDQMGAIVTYTGSQIINGAFNLI 960
Score = 45 (20.9 bits), Expect = 1.2e-06, Sum P(6) = 1.2e-06
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 929 CKALISNGTLCSHCKGREAELYCKTVSQVQELEVLFGR---LWTQCQEC 974
C LI C HC + + V+ + E E+ G+ +W C+ C
Sbjct: 2772 CHELILKDIFCDHCS---SVYHMNVVTSLVEAEIS-GKPSFIWL-CKNC 2815
Score = 39 (18.8 bits), Expect = 3.4e-05, Sum P(6) = 3.4e-05
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 665 NAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYIS 700
NA +I+ D ++++ F ++ + + + Y S
Sbjct: 2451 NANIIFADLRNLVISFNEYSIISGRNILKNLIKYFS 2486
>UNIPROTKB|C6KTD8 [details] [associations]
symbol:PFF1470c "DNA polymerase epsilon, catalytic subunit
a, putative" species:36329 "Plasmodium falciparum 3D7" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006261
"DNA-dependent DNA replication" evidence=ISS] [GO:0008622 "epsilon
DNA polymerase complex" evidence=ISS] InterPro:IPR006133
InterPro:IPR006172 InterPro:IPR012337 Pfam:PF03104 SMART:SM00486
GO:GO:0000166 GO:GO:0003676 GO:GO:0006261 SUPFAM:SSF53098
EMBL:AL844505 GO:GO:0008622 GO:GO:0003887 KO:K02324
RefSeq:XP_966285.1 ProteinModelPortal:C6KTD8 IntAct:C6KTD8
PRIDE:C6KTD8 EnsemblProtists:PFF1470c:mRNA GeneID:3885768
KEGG:pfa:PFF1470c EuPathDB:PlasmoDB:PF3D7_0630300
HOGENOM:HOG000281650 ProtClustDB:CLSZ2432328 Uniprot:C6KTD8
Length = 2907
Score = 110 (43.8 bits), Expect = 1.2e-06, Sum P(6) = 1.2e-06
Identities = 45/183 (24%), Positives = 80/183 (43%)
Query: 237 YESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAKTLSYCQLEFDCLYSDIISRHPEGEF 296
YE +V + R ID NI G W +V + E D LY+++I +
Sbjct: 289 YEYDVKYLTRICIDKNIRCGLWYKV---------------KREEDELYTELIQFEILNK- 332
Query: 297 SKMAPFRILSFDIECAGRKGHFPEPTHDPVIQVANLVTLQG----EKQPFIRNVMTL--K 350
+AP IL++DIEC + FP+ D +I ++ + QG + +N+ K
Sbjct: 333 KVLAPLNILAWDIECYKDELKFPDKEKDEIILISYMYNAQGYLIVNRNVMSKNIREFLYK 392
Query: 351 SCAPIVGVDVMSFETERD---VLLAWRDFIREVDPDVMIGYNICKFDLPYLIEKEDVHHS 407
G E++ +L + + IR + + + YN FD+PYL + ++++
Sbjct: 393 PNEEYSGAGTFKIFNEKNEYFLLKRFLEHIRLLKIHIFVTYNGDFFDIPYLYRRCEINNL 452
Query: 408 IIS 410
+S
Sbjct: 453 SVS 455
Score = 79 (32.9 bits), Expect = 1.2e-06, Sum P(6) = 1.2e-06
Identities = 28/101 (27%), Positives = 49/101 (48%)
Query: 389 NICKFDLPYLIEKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYV 448
++CK L Y +V ++ + N + LAVY + DA L DK FI N++
Sbjct: 497 SVCKIKLKY--NPTEVDPELMVPIAKNNPQ---HLAVYSVSDAVATFYLYDK--FIHNFL 549
Query: 449 EMARVTGVPIS--FLLSRGQSIKVLSQLLRKAKQKNLVIPN 487
A + +P++ +L +G L+ +A +KN++ PN
Sbjct: 550 -FALSSIIPMNPDNVLRQGSGTLCEQLLMAEAYRKNILFPN 589
Score = 59 (25.8 bits), Expect = 1.2e-06, Sum P(6) = 1.2e-06
Identities = 9/25 (36%), Positives = 20/25 (80%)
Query: 518 LDFASLYPSIMMAYNLCYSTLVTPE 542
LD A++YP+I++++ L + ++TP+
Sbjct: 711 LDVAAMYPNIILSHRLQPNAIITPD 735
Score = 55 (24.4 bits), Expect = 1.2e-06, Sum P(6) = 1.2e-06
Identities = 38/194 (19%), Positives = 83/194 (42%)
Query: 723 KKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQYVKS 782
KKRY + + N K ++ KG E RR +++ +E + L + + +
Sbjct: 1083 KKRY--VVFNNKYKISEL--KGFEIKRRGELRIIQRFQSEIFNHFLKGKTKEESYYHASL 1138
Query: 783 TIS---DLLMNR-MDLS-------LLVITKGLTKTGDDY-EVKAAHVELAERMRK--RDA 828
T + +L+ + +D+ L++ K L K+ + K+ + A+R+ + +A
Sbjct: 1139 TANKWKNLIDTKAIDIDNDDELFDLILAKKVLNKSVKEQPNAKSFGITTAKRLSELLNNA 1198
Query: 829 ATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQISKPLLRIFEP 888
+ + ++++ G+ R+ PI + + NI HY +SK L F P
Sbjct: 1199 SYIEDNNVSTQFIVVSKPIGSDITFRAI-PIQIFKTNIDTQIHY-----LSKWLGTKFPP 1252
Query: 889 ILKNASKELLSGDH 902
+ ++++ D+
Sbjct: 1253 NVPVNVRDIIDWDY 1266
Score = 52 (23.4 bits), Expect = 1.2e-06, Sum P(6) = 1.2e-06
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 599 EKAVL-DGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLV 652
+K +L D QLA K NS YG+ + ++ + VT G Q+I L+
Sbjct: 906 DKILLNDSLQLAHKCILNSFYGYVKRRSSRWYSDQMGAIVTYTGSQIINGAFNLI 960
Score = 45 (20.9 bits), Expect = 1.2e-06, Sum P(6) = 1.2e-06
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 929 CKALISNGTLCSHCKGREAELYCKTVSQVQELEVLFGR---LWTQCQEC 974
C LI C HC + + V+ + E E+ G+ +W C+ C
Sbjct: 2772 CHELILKDIFCDHCS---SVYHMNVVTSLVEAEIS-GKPSFIWL-CKNC 2815
Score = 39 (18.8 bits), Expect = 3.4e-05, Sum P(6) = 3.4e-05
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 665 NAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYIS 700
NA +I+ D ++++ F ++ + + + Y S
Sbjct: 2451 NANIIFADLRNLVISFNEYSIISGRNILKNLIKYFS 2486
>FB|FBgn0264326 [details] [associations]
symbol:DNApol-epsilon "DNA polymerase epsilon" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IDA]
[GO:0008296 "3'-5'-exodeoxyribonuclease activity" evidence=IDA]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS;NAS;IDA] [GO:0008622 "epsilon DNA polymerase complex"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0035265 "organ growth"
evidence=IMP] [GO:0007113 "endomitotic cell cycle" evidence=IMP]
[GO:0000278 "mitotic cell cycle" evidence=IMP] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR013697 Pfam:PF00136 Pfam:PF03104 Pfam:PF08490
SMART:SM00486 EMBL:AE014297 GO:GO:0022008 GO:GO:0000166
GO:GO:0003677 GO:GO:0008270 GO:GO:0006281 GO:GO:0006261
GO:GO:0035265 SUPFAM:SSF53098 GO:GO:0007113 GO:GO:0008622
GO:GO:0003887 GO:GO:0008296 HSSP:Q56366 KO:K02324 OMA:QEESQDL
GeneTree:ENSGT00390000010194 FlyBase:FBgn0264326 RefSeq:NP_524462.2
UniGene:Dm.1294 ProteinModelPortal:Q9VCN1 IntAct:Q9VCN1
MINT:MINT-1009597 STRING:Q9VCN1 EnsemblMetazoa:FBtr0084408
GeneID:42758 KEGG:dme:Dmel_CG6768 CTD:42758 InParanoid:Q9VCN1
PhylomeDB:Q9VCN1 GenomeRNAi:42758 NextBio:830428
ArrayExpress:Q9VCN1 Bgee:Q9VCN1 Uniprot:Q9VCN1
Length = 2236
Score = 110 (43.8 bits), Expect = 0.00036, Sum P(5) = 0.00036
Identities = 57/214 (26%), Positives = 94/214 (43%)
Query: 238 ESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAKTLSYCQLEFDCLYSDIISRHPEGEFS 297
E +V + +R ID I G W + + S +L DI+ R PE
Sbjct: 221 EHDVPYHVRVSIDLRIFCGQWYNI---------RCRSGVELPTITCRPDILDR-PE---- 266
Query: 298 KMAPFRILSFDIECAGRKGHFPEPTHDPVIQVANLVTLQG----EKQPFIRNVMTLK-SC 352
P +L+FDIE FP+ D V+ ++ ++ QG ++ NV + +
Sbjct: 267 ---PV-VLAFDIETTKLPLKFPDAQTDQVMMISYMIDGQGYLITNREIISSNVDDFEYTP 322
Query: 353 APIVGVDVMSFETERDVLLAWR--DFIREVDPDVMIGYNICKFDLPYLIEKE-----DVH 405
P + + F E ++ L R D I EV P +++ YN FD P++ + D+
Sbjct: 323 KPEFEGNFIVFNEENEMQLLQRFFDHIMEVRPHIIVTYNGDFFDWPFVETRAAVYDLDMK 382
Query: 406 HSI-ISDLQNGNAETRRRLAVYCL----KDAYLP 434
I S L++GN +R + + CL +D+YLP
Sbjct: 383 QEIGFSKLRDGNYLSRPAIHMDCLCWVKRDSYLP 416
Score = 71 (30.1 bits), Expect = 0.00036, Sum P(5) = 0.00036
Identities = 37/162 (22%), Positives = 65/162 (40%)
Query: 723 KKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIP---GAVQY 779
KKRYA + + KG E RR L+KN + L + +V
Sbjct: 954 KKRYAVFNFDGT----LAELKGFEVKRRGELQLIKNFQSSVFEAFLAGSTLEECYASVAK 1009
Query: 780 VKSTISDLLMNR----MDLSLLVI---TKGLTKTGDDYEV-KAAHVELAERMRK-RDAAT 830
V D+L +R D L + K ++K ++Y K+ + A+R+ +
Sbjct: 1010 VADYWLDVLYSRGSNLPDSELFELISENKSMSKKLEEYGAQKSTSISTAKRLAEFLGEQM 1069
Query: 831 APNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHY 872
+ G Y+I K +GA ER+ P+ + ++ + H+
Sbjct: 1070 VKDAGLACKYIISKKPEGAPVTERAI-PLAIFQSEPSVRRHH 1110
Score = 52 (23.4 bits), Expect = 0.00036, Sum P(5) = 0.00036
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 600 KAVLDGRQLALKISANSVYGFT---GATVGQLPCIEI----SSSVTSYGRQMIEHTKKLV 652
+ + D QLA K NS YG+ GA +P I S++ + R++IE + +
Sbjct: 796 EVLYDSLQLAHKCILNSFYGYVMRRGARWHSMPMAGIVCLTGSNIITKAREIIERVGRPL 855
Query: 653 E 653
E
Sbjct: 856 E 856
Score = 49 (22.3 bits), Expect = 0.00036, Sum P(5) = 0.00036
Identities = 32/120 (26%), Positives = 52/120 (43%)
Query: 437 LLDKLMFIFNYVEMARVTGV-----PISFLLSRGQSIKVLSQ----LLRKAKQKNLVIPN 487
+LD ++ +VE A +GV P F L +K L + +LR A + IP
Sbjct: 531 VLDSETYVGGHVE-ALESGVFRADIPCRFRLDPAM-VKQLQEQVDAVLRHAIEVEEGIPL 588
Query: 488 VKQAGSE---QGTYEGATVLEARAGFYEKPIAT-LDFASLYPSIMMAYNLCYSTLVTPED 543
K + Q +G L E+P+ LD ++YP+I++ L S +V+ D
Sbjct: 589 EKVLNLDEVRQEIVQGLQGLHDIPNRLEQPVIYHLDVGAMYPNIILTNRLQPSAMVSDLD 648
Score = 43 (20.2 bits), Expect = 0.00036, Sum P(5) = 0.00036
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 989 CPIFYRRKKAQ---KDMAEAKLQLDRW 1012
CPI +RK+ Q D EA+ Q W
Sbjct: 1222 CPIVTKRKRIQLEEHDDEEAQPQATTW 1248
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.136 0.405 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1014 973 0.00097 122 3 11 22 0.38 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 101
No. of states in DFA: 627 (67 KB)
Total size of DFA: 461 KB (2218 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 79.62u 0.16s 79.78t Elapsed: 00:00:04
Total cpu time: 79.66u 0.16s 79.82t Elapsed: 00:00:04
Start: Mon May 20 20:47:10 2013 End: Mon May 20 20:47:14 2013
WARNINGS ISSUED: 1