BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001780
(1014 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LVN7|DPOD1_ARATH DNA polymerase delta catalytic subunit OS=Arabidopsis thaliana
GN=POLD1 PE=2 SV=2
Length = 1095
Score = 1623 bits (4204), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 818/1099 (74%), Positives = 903/1099 (82%), Gaps = 89/1099 (8%)
Query: 1 MNRSNGSARKRPPPTPKESWPNKQQATTPTTP-----VIDDEFL-DEDVFLDETLL--PE 52
MNRS G ++KRPPP+ K +AT +TP +DDEF+ +EDVFLDETLL E
Sbjct: 1 MNRS-GISKKRPPPSNTPPPAGKHRATGDSTPSPAIGTLDDEFMMEEDVFLDETLLYGDE 59
Query: 53 DEESLILRDIEQRQDFASRLAKWARPPLSSGYVSQCQSIMFQQLDIDYVIGDSNRELLPL 112
DEESLILRDIE+R+ SR + WARPPLS Y+S QSI+FQQL+ID +I +S++ELLP
Sbjct: 60 DEESLILRDIEERE---SRSSAWARPPLSPAYLSNSQSIIFQQLEIDSIIAESHKELLPG 116
Query: 113 SSGSAAIIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANR 172
SSG A IIR+FGVTREG+SVCC VHGFEPYFYI+CP GMGPDDIS+FHQ LEGRMRE+N+
Sbjct: 117 SSGQAPIIRMFGVTREGNSVCCFVHGFEPYFYIACPPGMGPDDISNFHQSLEGRMRESNK 176
Query: 173 NSKVPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMK 232
N+KVP+FV+ IEMVQKRSIMYYQQQKSQ FLKI VALPTMVASCRGILDRG+Q+DGLGMK
Sbjct: 177 NAKVPKFVKRIEMVQKRSIMYYQQQKSQTFLKITVALPTMVASCRGILDRGLQIDGLGMK 236
Query: 233 SFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAKTLSYCQLEFDCLYSDIISRHP 292
SF TYESN+LF LRFM+DC+IVGGNWIEVP GKY+K A+TLSYCQLEF CLYSD+IS
Sbjct: 237 SFQTYESNILFVLRFMVDCDIVGGNWIEVPTGKYKKNARTLSYCQLEFHCLYSDLISHAA 296
Query: 293 EGEFSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQ--------------VANLVTLQG- 337
EGE+SKMAPFR+LSFDIECAGRKGHFPE HDPVIQ V N++TL+
Sbjct: 297 EGEYSKMAPFRVLSFDIECAGRKGHFPEAKHDPVIQIANLVTLQGEDHPFVRNVMTLKSC 356
Query: 338 -------------EKQPFIRNVMTLKSCAP--IVGVDVMSFE----TERDVLLAWRDF-- 376
E++ + ++ P I+G ++ F+ ER L +F
Sbjct: 357 APIVGVDVMSFETEREVLLAWRDLIRDVDPDIIIGYNICKFDLPYLIERAATLGIEEFPL 416
Query: 377 ----------------------IREVDPDVMIG------------------YNICKFDLP 396
IRE + G Y++
Sbjct: 417 LGRVKNSRVRVRDSTFSSRQQGIRESKETTIEGRFQFDLIQAIHRDHKLSSYSLNSVSAH 476
Query: 397 YLIE-KEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTG 455
+L E KEDVHHSII+DLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFI+NYVEMARVTG
Sbjct: 477 FLSEQKEDVHHSIITDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTG 536
Query: 456 VPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPI 515
VPISFLL+RGQSIKVLSQLLRK KQKNLV+PN KQ+GSEQGTYEGATVLEAR GFYEKPI
Sbjct: 537 VPISFLLARGQSIKVLSQLLRKGKQKNLVLPNAKQSGSEQGTYEGATVLEARTGFYEKPI 596
Query: 516 ATLDFASLYPSIMMAYNLCYSTLVTPEDARKLNLPPECVNKTPSGETFVKSNLQKGILPE 575
ATLDFASLYPSIMMAYNLCY TLVTPED RKLNLPPE V KTPSGETFVK LQKGILPE
Sbjct: 597 ATLDFASLYPSIMMAYNLCYCTLVTPEDVRKLNLPPEHVTKTPSGETFVKQTLQKGILPE 656
Query: 576 ILEELLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISS 635
ILEELL ARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPC+EISS
Sbjct: 657 ILEELLTARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCLEISS 716
Query: 636 SVTSYGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREA 695
SVTSYGRQMIE TKKLVEDKFTT+GGY++NAEVIYGDTDSVMVQFGV VEAAM LGREA
Sbjct: 717 SVTSYGRQMIEQTKKLVEDKFTTLGGYQYNAEVIYGDTDSVMVQFGVSDVEAAMTLGREA 776
Query: 696 ADYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLL 755
A++ISGTFIKPIKLEFEKVY+PYLLI+KKRYAGL WTNP++FDKMDTKGIETVRRDNCLL
Sbjct: 777 AEHISGTFIKPIKLEFEKVYFPYLLINKKRYAGLLWTNPQQFDKMDTKGIETVRRDNCLL 836
Query: 756 VKNLVTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAA 815
VKNLVTE L+KIL+DRD+PGA + VK TISDLLMNR+DLSLLVITKGLTKTGDDYEVK+A
Sbjct: 837 VKNLVTESLNKILIDRDVPGAAENVKKTISDLLMNRIDLSLLVITKGLTKTGDDYEVKSA 896
Query: 816 HVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLE 875
H ELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVL+NNIPID +YYLE
Sbjct: 897 HGELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLQNNIPIDPNYYLE 956
Query: 876 NQISKPLLRIFEPILKNASKELLSGDHTRSISISTPSNSGIMKFAKRQLSCIGCKALISN 935
NQISKPLLRIFEP+LKNASKELL G HTRSISI+TPSNSGIMKFAK+QLSC+GCK ISN
Sbjct: 957 NQISKPLLRIFEPVLKNASKELLHGSHTRSISITTPSNSGIMKFAKKQLSCVGCKVPISN 1016
Query: 936 GTLCSHCKGREAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRR 995
GTLC+ CKGREAELYCK VSQV ELE +FGRLWTQCQECQGSLHQDVLCTSRDCPIFYRR
Sbjct: 1017 GTLCASCKGREAELYCKNVSQVAELEEVFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRR 1076
Query: 996 KKAQKDMAEAKLQLDRWNF 1014
KAQKDMA A+ QLDRW+F
Sbjct: 1077 MKAQKDMAVARQQLDRWSF 1095
>sp|Q9LRE6|DPOD1_ORYSJ DNA polymerase delta catalytic subunit OS=Oryza sativa subsp.
japonica GN=POLD1 PE=2 SV=1
Length = 1105
Score = 1163 bits (3009), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 561/617 (90%), Positives = 591/617 (95%), Gaps = 2/617 (0%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+KEDVHHSIISDLQNGN+ETRRRLAVYCLKDAYLPQRLLDKLM+I+NYVEMARVTGVPIS
Sbjct: 489 QKEDVHHSIISDLQNGNSETRRRLAVYCLKDAYLPQRLLDKLMYIYNYVEMARVTGVPIS 548
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLD 519
FLLSRGQSIKVLSQLLRKAKQKNLVIPN+K S Q T+EGATVLEARAGFYEKPIATLD
Sbjct: 549 FLLSRGQSIKVLSQLLRKAKQKNLVIPNIKGQASGQDTFEGATVLEARAGFYEKPIATLD 608
Query: 520 FASLYPSIMMAYNLCYSTLVTPEDARKLNLPPECVNKTPSGETFVKSNLQKGILPEILEE 579
FASLYPSIMMAYNLCY TLV PEDARKLNLPPE VNKTPSGETFVK ++QKGILPEILEE
Sbjct: 609 FASLYPSIMMAYNLCYCTLVPPEDARKLNLPPESVNKTPSGETFVKPDVQKGILPEILEE 668
Query: 580 LLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTS 639
LLAARKRAKADLKEAKDP E+AVLDGRQLALKISANSVYGFTGATVGQLPC+EISSSVTS
Sbjct: 669 LLAARKRAKADLKEAKDPFERAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTS 728
Query: 640 YGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYI 699
YGRQMIEHTKKLVEDKFTT+GGYEHNAEVIYGDTDSVMVQFGV TVE AMKLGREAADYI
Sbjct: 729 YGRQMIEHTKKLVEDKFTTLGGYEHNAEVIYGDTDSVMVQFGVSTVEDAMKLGREAADYI 788
Query: 700 SGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNL 759
SGTFIKPIKLEFEK+Y+PYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNL
Sbjct: 789 SGTFIKPIKLEFEKIYFPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNL 848
Query: 760 VTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVEL 819
VTECLHKILVDRD+PGAVQYVK+TISDLLMNR+DLSLLVITKGLTKTG+DY VKAAHVEL
Sbjct: 849 VTECLHKILVDRDVPGAVQYVKNTISDLLMNRVDLSLLVITKGLTKTGEDYAVKAAHVEL 908
Query: 820 AERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQIS 879
AERMRKRDAATAP VGDRVPYVIIKAAKGAKAYERSEDPIYVL+NNIPID YYLENQIS
Sbjct: 909 AERMRKRDAATAPTVGDRVPYVIIKAAKGAKAYERSEDPIYVLDNNIPIDPQYYLENQIS 968
Query: 880 KPLLRIFEPILKNASKELLSGDHTRSISISTPSNSGIMKFAKRQLSCIGCKALI--SNGT 937
KPLLRIFEPILKNAS+ELL G HTR++SISTPSNSGIMKFAK+QL+C+GCKA+I SN T
Sbjct: 969 KPLLRIFEPILKNASRELLHGSHTRAVSISTPSNSGIMKFAKKQLTCLGCKAVISGSNQT 1028
Query: 938 LCSHCKGREAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKK 997
LC HCKGREAELYCKTV V ELE+LFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRR+K
Sbjct: 1029 LCFHCKGREAELYCKTVGNVSELEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRRK 1088
Query: 998 AQKDMAEAKLQLDRWNF 1014
AQKDMAEA++QL RW+F
Sbjct: 1089 AQKDMAEARVQLQRWDF 1105
Score = 624 bits (1608), Expect = e-177, Method: Compositional matrix adjust.
Identities = 287/391 (73%), Positives = 338/391 (86%), Gaps = 7/391 (1%)
Query: 35 DDEFLDEDVFLDETLLPEDEESLILRDIEQRQDFASRLAKWARPPLSSGYVSQC-QSIMF 93
+++ +DEDVFLDET+L EDEE+L+L D + + ASRL++W RP L + S C +++ F
Sbjct: 48 EEDMMDEDVFLDETILAEDEEALLLLD--RDEALASRLSRWRRPALPADLASGCSRNVAF 105
Query: 94 QQLDIDYVIGDSNRELLPLSSGSAAIIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGP 153
QQL+IDYVIG+S++ LLP SSG AAI+RIFGVTREGHSVCC+VHGFEPYFYISCP GMGP
Sbjct: 106 QQLEIDYVIGESHKVLLPNSSGPAAILRIFGVTREGHSVCCQVHGFEPYFYISCPMGMGP 165
Query: 154 DDISHFHQILEGRMREANRNSKVPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMV 213
DDIS FHQ LEGRM+++NRNS VP+FV+ IE+VQK++IM+YQ Q+SQPFLKIVVALPTMV
Sbjct: 166 DDISRFHQTLEGRMKDSNRNSNVPRFVKRIELVQKQTIMHYQPQQSQPFLKIVVALPTMV 225
Query: 214 ASCRGILDRGIQLDGLGMKSFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAKTL 273
ASCRGIL+RGI ++GLG KSF+TYESN+LFALRFMIDCNIVGGNWIEVP GKY K A+ +
Sbjct: 226 ASCRGILERGITIEGLGSKSFLTYESNILFALRFMIDCNIVGGNWIEVPAGKYMKAARIM 285
Query: 274 SYCQLEFDCLYSDIISRHPEGEFSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQVANLV 333
SYCQLE DCLYSD++S EGE SKMAPFRILSFDIECAGRKGHFPEPTHDPVIQ+ANLV
Sbjct: 286 SYCQLELDCLYSDLVSHAAEGEHSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQIANLV 345
Query: 334 TLQGEKQPFIRNVMTLKSCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKF 393
TLQGE QPF+RNVMTLKSC+PIVGVDVMSF+TERDVLLAWRDFIREVDPD++IGYNICKF
Sbjct: 346 TLQGEGQPFVRNVMTLKSCSPIVGVDVMSFDTERDVLLAWRDFIREVDPDIIIGYNICKF 405
Query: 394 DLPYLIEKED----VHHSIISDLQNGNAETR 420
DLPYLIE+ + V I+ ++N R
Sbjct: 406 DLPYLIERAEVLKIVEFPILGRIRNSRVRVR 436
>sp|O48901|DPOD1_SOYBN DNA polymerase delta catalytic subunit OS=Glycine max GN=POLD1 PE=2
SV=1
Length = 1088
Score = 1004 bits (2597), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/557 (88%), Positives = 519/557 (93%), Gaps = 1/557 (0%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+KEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFI+NYVEMARVTGVPIS
Sbjct: 446 QKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPIS 505
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLD 519
FLLSRGQSIKVLSQLLR+A+QKNLVIPN KQAGSEQGT+EGATVLEARAGFYEKPIATLD
Sbjct: 506 FLLSRGQSIKVLSQLLRRARQKNLVIPNAKQAGSEQGTFEGATVLEARAGFYEKPIATLD 565
Query: 520 FASLYPSIMMAYNLCYSTLVTPEDARKLNLPPECVNKTPSGETFVKSNLQKGILPEILEE 579
FASLYPSIMMAYNLCY TLV PEDARKLN+PPE VN+TPSGETFVKSNLQKGILPEILEE
Sbjct: 566 FASLYPSIMMAYNLCYCTLVIPEDARKLNIPPESVNRTPSGETFVKSNLQKGILPEILEE 625
Query: 580 LLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTS 639
LL ARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGAT+GQLPC+EISSSVTS
Sbjct: 626 LLTARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATIGQLPCLEISSSVTS 685
Query: 640 YGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYI 699
YGRQMIEHTKKLVEDKFTT+ GYEHNAEVIYGDTDSVMVQFGV VE AM LGREAA++I
Sbjct: 686 YGRQMIEHTKKLVEDKFTTLNGYEHNAEVIYGDTDSVMVQFGVSAVEEAMNLGREAAEHI 745
Query: 700 SGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNL 759
SGTF KPIKLEFEKVYYPYLLISKKRYAGL+WT P+ FDKMDTKGIETVRRDNCLLVKNL
Sbjct: 746 SGTFTKPIKLEFEKVYYPYLLISKKRYAGLFWTKPDNFDKMDTKGIETVRRDNCLLVKNL 805
Query: 760 VTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVEL 819
V +CLHKIL+DRDIPGAVQYVK+ ISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVEL
Sbjct: 806 VNDCLHKILIDRDIPGAVQYVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVEL 865
Query: 820 AERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQIS 879
AERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPID HYYLENQIS
Sbjct: 866 AERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDPHYYLENQIS 925
Query: 880 KPLLRIFEPILKNASKELLSGDHTRSISISTPSNSGIMKFAKRQLSCIGCKALISNGTLC 939
KP+LRIFEPILKNASKELL G HTRSISISTPSNSGI++FAK+QL + K ++
Sbjct: 926 KPILRIFEPILKNASKELLHGSHTRSISISTPSNSGILRFAKKQLPALVVKLYLARVITL 985
Query: 940 SHCKGREAELYCKTVSQ 956
S +E L C TV Q
Sbjct: 986 SVHIAKEGRLSC-TVKQ 1001
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/367 (84%), Positives = 342/367 (93%)
Query: 35 DDEFLDEDVFLDETLLPEDEESLILRDIEQRQDFASRLAKWARPPLSSGYVSQCQSIMFQ 94
++EF+DEDVF++ETL+ EDEESLILRDIEQRQ A+RL+KW RPPLS+GYV+Q +S++FQ
Sbjct: 4 EEEFMDEDVFINETLVSEDEESLILRDIEQRQALANRLSKWTRPPLSAGYVAQSRSVLFQ 63
Query: 95 QLDIDYVIGDSNRELLPLSSGSAAIIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPD 154
QL+IDYVI +S+ ELLP SSG AIIRIFGVT+EGHSVCC VHGFEPYFYI CP GMGPD
Sbjct: 64 QLEIDYVIAESHGELLPNSSGPVAIIRIFGVTKEGHSVCCNVHGFEPYFYICCPPGMGPD 123
Query: 155 DISHFHQILEGRMREANRNSKVPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVA 214
DISHFHQ LEGRMREANRNS V +FVR IEMVQ+RSIMYYQQ SQPFLKIVVALPTMVA
Sbjct: 124 DISHFHQTLEGRMREANRNSNVGKFVRRIEMVQRRSIMYYQQSNSQPFLKIVVALPTMVA 183
Query: 215 SCRGILDRGIQLDGLGMKSFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAKTLS 274
SCRGILDRGIQLDGLGMKSF+TYESNVLFALRFMIDCNIVGGNWI +P GKY+KTAK+LS
Sbjct: 184 SCRGILDRGIQLDGLGMKSFLTYESNVLFALRFMIDCNIVGGNWIGIPAGKYKKTAKSLS 243
Query: 275 YCQLEFDCLYSDIISRHPEGEFSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQVANLVT 334
YCQLEFDCLYS++IS PEGE+SKMAPFRILSFDIECAGRKGHFPEPTHDPVIQ+ANLVT
Sbjct: 244 YCQLEFDCLYSELISHAPEGEYSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQIANLVT 303
Query: 335 LQGEKQPFIRNVMTLKSCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFD 394
LQGE QPFIRNVMTLKSC+PIVGVDVM FETER+VLLAWRDFIREVDPD++IGYNICKFD
Sbjct: 304 LQGEDQPFIRNVMTLKSCSPIVGVDVMPFETEREVLLAWRDFIREVDPDIIIGYNICKFD 363
Query: 395 LPYLIEK 401
LPYLIE+
Sbjct: 364 LPYLIER 370
>sp|P30316|DPOD_SCHPO DNA polymerase delta catalytic subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pol3 PE=1 SV=2
Length = 1086
Score = 818 bits (2113), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/617 (64%), Positives = 486/617 (78%), Gaps = 6/617 (0%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+KEDVH+SII+DLQNG A++RRRLA+YCLKDAYLPQRL+DKLM NY EMARVTGVP +
Sbjct: 469 QKEDVHYSIITDLQNGTADSRRRLAIYCLKDAYLPQRLMDKLMCFVNYTEMARVTGVPFN 528
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLD 519
FLL+RGQ IKV+SQL RKA Q +LV+PN++ G+++ YEGATV+E G+Y+ PIATLD
Sbjct: 529 FLLARGQQIKVISQLFRKALQHDLVVPNIRVNGTDE-QYEGATVIEPIKGYYDTPIATLD 587
Query: 520 FASLYPSIMMAYNLCYSTLVTPEDARKLNLPPEC-VNKTPSGETFVKSNLQKGILPEILE 578
F+SLYPSIM A+NLCY+TL+ A L L + + TP+G+ FVK +++KG+LP IL
Sbjct: 588 FSSLYPSIMQAHNLCYTTLLDSNTAELLKLKQDVDYSVTPNGDYFVKPHVRKGLLPIILA 647
Query: 579 ELLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVT 638
+LL ARK+AKADLK+ DP +KAVLDGRQLALK+SANSVYGFTGAT G+LPC+ ISSSVT
Sbjct: 648 DLLNARKKAKADLKKETDPFKKAVLDGRQLALKVSANSVYGFTGATNGRLPCLAISSSVT 707
Query: 639 SYGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADY 698
SYGRQMIE TK +VE ++ GY H+A VIYGDTDSVMV+FGV T+ AMKLG EAA+Y
Sbjct: 708 SYGRQMIEKTKDVVEKRYRIENGYSHDAVVIYGDTDSVMVKFGVKTLPEAMKLGEEAANY 767
Query: 699 ISGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKN 758
+S F PIKLEFEKVY+PYLLISKKRYAGL+WT + +DKMD+KGIETVRRDNC LV
Sbjct: 768 VSDQFPNPIKLEFEKVYFPYLLISKKRYAGLFWTRTDTYDKMDSKGIETVRRDNCPLVSY 827
Query: 759 LVTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVE 818
++ L K+L+D+D+ GA + K ISDLL N++D+S LVITK L+KT DY K AHVE
Sbjct: 828 VIDTALRKMLIDQDVEGAQLFTKKVISDLLQNKIDMSQLVITKALSKT--DYAAKMAHVE 885
Query: 819 LAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQI 878
LAERMRKRDA +AP +GDRV YVIIK A+G + Y RSEDPIYVLENNIPID YYLENQ+
Sbjct: 886 LAERMRKRDAGSAPAIGDRVAYVIIKGAQGDQFYMRSEDPIYVLENNIPIDAKYYLENQL 945
Query: 879 SKPLLRIFEPILKNASKELLSGDHTRSISISTPSNSGIMKFAKRQLSCIGCKALISNG-- 936
SKPLLRIFEPIL + LL GDHTR+IS++ PS GIMKFA + +C+GCKA I G
Sbjct: 946 SKPLLRIFEPILGEKASSLLHGDHTRTISMAAPSVGGIMKFAVKVETCLGCKAPIKKGKT 1005
Query: 937 TLCSHCKGREAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRK 996
LC +C R AELY + V+QV +LEV F RLWTQCQ CQGS+HQDV+CTSRDCPIFY R
Sbjct: 1006 ALCENCLNRSAELYQRQVAQVNDLEVRFARLWTQCQRCQGSMHQDVICTSRDCPIFYMRI 1065
Query: 997 KAQKDMAEAKLQLDRWN 1013
K + ++ L R++
Sbjct: 1066 AEHKKLQQSVDLLKRFD 1082
Score = 271 bits (694), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 143/355 (40%), Positives = 212/355 (59%), Gaps = 26/355 (7%)
Query: 52 EDEESLILRDIEQRQDFASRLAKWARPPLSSGYVSQCQSIMFQQLDIDYVIGDSNRELLP 111
EDE + ++Q + +S+ +W RP L + + I FQQ+D +
Sbjct: 60 EDELAEYASQLDQDEIKSSKDQQWQRPALPA-INPEKDDIYFQQIDSE-----------E 107
Query: 112 LSSGSAAIIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREAN 171
+ GS IR+FGVT G+S+ V GF PYFY+ P G P+ + F Q L+ A
Sbjct: 108 FTEGSVPSIRLFGVTDNGNSILVHVVGFLPYFYVKAPVGFRPEMLERFTQDLD-----AT 162
Query: 172 RNSKVPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGI----QLD 227
N V + H + K ++ +Q + PF+KI P +++ R + +RG +L
Sbjct: 163 CNGGV---IDHCIIEMKENLYGFQGNEKSPFIKIFTTNPRILSRARNVFERGEFNFEELF 219
Query: 228 GLGMKSFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYR-KTAKTLSYCQLEFDCLYSD 286
+G+ T+ESN + LRFMIDC++VG NWI +P KY+ + +S CQ+E Y D
Sbjct: 220 PVGV-GVTTFESNTQYLLRFMIDCDVVGMNWIHLPASKYQFRYQNRVSNCQIEAWINYKD 278
Query: 287 IISRHPEGEFSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQVANLVTLQGEKQPFIRNV 346
+IS EG++SKMAP RI+SFDIECAGRKG FP+P+ DPVIQ+A++VT G+ PF+RNV
Sbjct: 279 LISLPAEGQWSKMAPLRIMSFDIECAGRKGVFPDPSIDPVIQIASIVTQYGDSTPFVRNV 338
Query: 347 MTLKSCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
+ +C+ IVG V F+ + ++L +W F+R+VDPDV+IGYNIC FD+PYL+++
Sbjct: 339 FCVDTCSQIVGTQVYEFQNQAEMLSSWSKFVRDVDPDVLIGYNICNFDIPYLLDR 393
>sp|P52431|DPOD1_MOUSE DNA polymerase delta catalytic subunit OS=Mus musculus GN=Pold1 PE=1
SV=2
Length = 1105
Score = 799 bits (2064), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/618 (63%), Positives = 487/618 (78%), Gaps = 6/618 (0%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+KEDV HSII+DLQNGN +TRRRLAVYCLKDA+LP RLL++LM + N VEMARVTGVP+
Sbjct: 483 QKEDVQHSIITDLQNGNEQTRRRLAVYCLKDAFLPLRLLERLMVLVNNVEMARVTGVPLG 542
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLD 519
+LL+RGQ +KV+SQLLR+A ++ L++P VK GSE Y GATV+E G+Y+ PIATLD
Sbjct: 543 YLLTRGQQVKVVSQLLRQAMRQGLLMPVVKTEGSED--YTGATVIEPLKGYYDVPIATLD 600
Query: 520 FASLYPSIMMAYNLCYSTLVTPEDARKLNLPPECVNKTPSGETFVKSNLQKGILPEILEE 579
F+SLYPSIMMA+NLCY+TL+ P A+KL L P+ KTP+G+ FVKS+++KG+LP+ILE
Sbjct: 601 FSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEFIKTPTGDEFVKSSVRKGLLPQILEN 660
Query: 580 LLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTS 639
LL+ARKRAKA+L + DPL + VLDGRQLALK+SANSVYGFTGA VG+LPC+EIS SVT
Sbjct: 661 LLSARKRAKAELAQETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTG 720
Query: 640 YGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYI 699
+GRQMIE TK+LVE K+T GY+ NA+V+YGDTDSVM +FGV +V AM LGREAA+++
Sbjct: 721 FGRQMIEKTKQLVESKYTVENGYDANAKVVYGDTDSVMCRFGVSSVAEAMSLGREAANWV 780
Query: 700 SGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTN-PEKFDKMDTKGIETVRRDNCLLVKN 758
S F PI+LEFEKVY+PYLLISKKRYAGL +++ + DKMD KG+E VRRDNC LV N
Sbjct: 781 SSHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSSRSDAHDKMDCKGLEAVRRDNCPLVAN 840
Query: 759 LVTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVE 818
LVT L +ILVDRD GAV + K ISDLL NR+D+S LVITK LT+ DY K AHVE
Sbjct: 841 LVTSSLRRILVDRDPDGAVAHAKDVISDLLCNRIDISQLVITKELTRAAADYAGKQAHVE 900
Query: 819 LAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQI 878
LAERMRKRD +AP++GDRVPYVII AAKG AY +SEDP++VLE+++PIDT YYLE Q+
Sbjct: 901 LAERMRKRDPGSAPSLGDRVPYVIIGAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQL 960
Query: 879 SKPLLRIFEPILKNASKE--LLSGDHTRSISISTPSNSGIMKFAKRQLSCIGCKALISN- 935
+KPLLRIFEPIL E LL GDHTR ++ T G++ F KR+ CIGC+++I +
Sbjct: 961 AKPLLRIFEPILGEGRAESVLLRGDHTRCKTVLTSKVGGLLAFTKRRNCCIGCRSVIDHQ 1020
Query: 936 GTLCSHCKGREAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRR 995
G +C C+ RE+ELY K VS + LE F RLWTQCQ CQGSLH+DV+CTSRDCPIFY R
Sbjct: 1021 GAVCKFCQPRESELYQKEVSHLNALEERFSRLWTQCQRCQGSLHEDVICTSRDCPIFYMR 1080
Query: 996 KKAQKDMAEAKLQLDRWN 1013
KK +KD+ + + L R+
Sbjct: 1081 KKVRKDLEDQERLLQRFG 1098
Score = 324 bits (830), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 160/337 (47%), Positives = 214/337 (63%), Gaps = 14/337 (4%)
Query: 74 KWARPPLSSGYVSQCQSIMFQQLDIDYVIGDSNRELLPLSSG------SAAIIRIFGVTR 127
+W RP L + S + ++FQQL+ID+ +G + PL G S I+R FGVT
Sbjct: 76 RWRRPTLRALDPS-TEPLIFQQLEIDHYVGSAP----PLPEGPLPSRNSVPILRAFGVTD 130
Query: 128 EGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANRNSK--VPQFVRHIEM 185
EG SVCC + GF PYFY P G G + +S Q L + R K V IE+
Sbjct: 131 EGFSVCCHIQGFAPYFYTPAPPGFGAEHLSELQQELNAAISRDQRGGKELSGPAVLAIEL 190
Query: 186 VQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFMTYESNVLFAL 245
+ S+ Y PFL+I +ALP ++A R +L++G+++ GLG SF YE+NV F +
Sbjct: 191 CSRESMFGYHGHGPSPFLRITLALPRLMAPARRLLEQGVRVPGLGTPSFAPYEANVDFEI 250
Query: 246 RFMIDCNIVGGNWIEVPVGKY-RKTAKTLSYCQLEFDCLYSDIISRHPEGEFSKMAPFRI 304
RFM+D +IVG NW+E+P GKY R+ K + CQLE D L+SD+IS PEG++ ++AP R+
Sbjct: 251 RFMVDADIVGCNWLELPAGKYVRRAEKKATLCQLEVDVLWSDVISHPPEGQWQRIAPLRV 310
Query: 305 LSFDIECAGRKGHFPEPTHDPVIQVANLVTLQGEKQPFIRNVMTLKSCAPIVGVDVMSFE 364
LSFDIECAGRKG FPEP DPVIQ+ +L GE +PF+R +TL+ CAPI+G V S+E
Sbjct: 311 LSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTLRPCAPILGAKVQSYE 370
Query: 365 TERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
E D+L AW DFI +DPDV+ GYNI FDLPYLI +
Sbjct: 371 REEDLLQAWADFILAMDPDVITGYNIQNFDLPYLISR 407
>sp|P28340|DPOD1_HUMAN DNA polymerase delta catalytic subunit OS=Homo sapiens GN=POLD1 PE=1
SV=2
Length = 1107
Score = 799 bits (2064), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/618 (63%), Positives = 487/618 (78%), Gaps = 6/618 (0%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+KEDV HSII+DLQNGN +TRRRLAVYCLKDAYLP RLL++LM + N VEMARVTGVP+S
Sbjct: 485 QKEDVQHSIITDLQNGNDQTRRRLAVYCLKDAYLPLRLLERLMVLVNAVEMARVTGVPLS 544
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLD 519
+LLSRGQ +KV+SQLLR+A + L++P VK G E Y GATV+E G+Y+ PIATLD
Sbjct: 545 YLLSRGQQVKVVSQLLRQAMHEGLLMPVVKSEGGED--YTGATVIEPLKGYYDVPIATLD 602
Query: 520 FASLYPSIMMAYNLCYSTLVTPEDARKLNLPPECVNKTPSGETFVKSNLQKGILPEILEE 579
F+SLYPSIMMA+NLCY+TL+ P A+KL L + +TP+G+ FVK++++KG+LP+ILE
Sbjct: 603 FSSLYPSIMMAHNLCYTTLLRPGTAQKLGLTEDQFIRTPTGDEFVKTSVRKGLLPQILEN 662
Query: 580 LLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTS 639
LL+ARKRAKA+L + DPL + VLDGRQLALK+SANSVYGFTGA VG+LPC+EIS SVT
Sbjct: 663 LLSARKRAKAELAKETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTG 722
Query: 640 YGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYI 699
+GRQMIE TK+LVE K+T GY +A+V+YGDTDSVM +FGV +V AM LGREAAD++
Sbjct: 723 FGRQMIEKTKQLVESKYTVENGYSTSAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWV 782
Query: 700 SGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTN-PEKFDKMDTKGIETVRRDNCLLVKN 758
SG F PI+LEFEKVY+PYLLISKKRYAGL +++ P+ D+MD KG+E VRRDNC LV N
Sbjct: 783 SGHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSSRPDAHDRMDCKGLEAVRRDNCPLVAN 842
Query: 759 LVTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVE 818
LVT L ++L+DRD GAV + + ISDLL NR+D+S LVITK LT+ DY K AHVE
Sbjct: 843 LVTASLRRLLIDRDPEGAVAHAQDVISDLLCNRIDISQLVITKELTRAASDYAGKQAHVE 902
Query: 819 LAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQI 878
LAERMRKRD +AP++GDRVPYVII AAKG AY +SEDP++VLE+++PIDT YYLE Q+
Sbjct: 903 LAERMRKRDPGSAPSLGDRVPYVIISAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQL 962
Query: 879 SKPLLRIFEPILKNASKE--LLSGDHTRSISISTPSNSGIMKFAKRQLSCIGCKALISN- 935
+KPLLRIFEPIL E LL GDHTR ++ T G++ FAKR+ CIGC+ ++S+
Sbjct: 963 AKPLLRIFEPILGEGRAEAVLLRGDHTRCKTVLTGKVGGLLAFAKRRNCCIGCRTVLSHQ 1022
Query: 936 GTLCSHCKGREAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRR 995
G +C C+ RE+ELY K VS + LE F RLWTQCQ CQGSLH+DV+CTSRDCPIFY R
Sbjct: 1023 GAVCEFCQPRESELYQKEVSHLNALEERFSRLWTQCQRCQGSLHEDVICTSRDCPIFYMR 1082
Query: 996 KKAQKDMAEAKLQLDRWN 1013
KK +KD+ + + L R+
Sbjct: 1083 KKVRKDLEDQEQLLRRFG 1100
Score = 322 bits (824), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 156/333 (46%), Positives = 212/333 (63%), Gaps = 6/333 (1%)
Query: 74 KWARPPLSSGYVSQCQSIMFQQLDIDYVIGDSNR--ELLPLSSGSAAIIRIFGVTREGHS 131
+W RP Q + ++FQQL+ID+ +G + P S GS ++R FGVT EG S
Sbjct: 78 RWLRP-TPPALDPQTEPLIFQQLEIDHYVGPAQPVPGGPPPSRGSVPVLRAFGVTDEGFS 136
Query: 132 VCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANRNSK--VPQFVRHIEMVQKR 189
VCC +HGF PYFY P G GP+ + + L + +R + V +E+ +
Sbjct: 137 VCCHIHGFAPYFYTPAPPGFGPEHMGDLQRELNLAISRDSRGGRELTGPAVLAVELCSRE 196
Query: 190 SIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFMTYESNVLFALRFMI 249
S+ Y PFL+I VALP +VA R +L++GI++ GLG SF YE+NV F +RFM+
Sbjct: 197 SMFGYHGHGPSPFLRITVALPRLVAPARRLLEQGIRVAGLGTPSFAPYEANVDFEIRFMV 256
Query: 250 DCNIVGGNWIEVPVGKYR-KTAKTLSYCQLEFDCLYSDIISRHPEGEFSKMAPFRILSFD 308
D +IVG NW+E+P GKY + + + CQLE D L+SD++S PEG + ++AP R+LSFD
Sbjct: 257 DTDIVGCNWLELPAGKYALRLKEKATQCQLEADVLWSDVVSHPPEGPWQRIAPLRVLSFD 316
Query: 309 IECAGRKGHFPEPTHDPVIQVANLVTLQGEKQPFIRNVMTLKSCAPIVGVDVMSFETERD 368
IECAGRKG FPEP DPVIQ+ +L GE +PF+R +TL+ CAPI+G V S+E E D
Sbjct: 317 IECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTLRPCAPILGAKVQSYEKEED 376
Query: 369 VLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
+L AW FIR +DPDV+ GYNI FDLPYLI +
Sbjct: 377 LLQAWSTFIRIMDPDVITGYNIQNFDLPYLISR 409
>sp|O54747|DPOD1_RAT DNA polymerase delta catalytic subunit OS=Rattus norvegicus GN=Pold1
PE=2 SV=1
Length = 1103
Score = 798 bits (2061), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/618 (63%), Positives = 486/618 (78%), Gaps = 6/618 (0%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+KEDV HSII+DLQNGN +TRRRLAVYCLKDA+LP RLL++LM + N VEMARVTGVP+
Sbjct: 481 QKEDVQHSIITDLQNGNEQTRRRLAVYCLKDAFLPLRLLERLMVLVNNVEMARVTGVPLG 540
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLD 519
+LLSRGQ +KV+SQLLR+A ++ L++P VK G E Y GATV+E G+Y+ PIATLD
Sbjct: 541 YLLSRGQQVKVVSQLLRQAMREGLLMPVVKTEGGED--YTGATVIEPLKGYYDVPIATLD 598
Query: 520 FASLYPSIMMAYNLCYSTLVTPEDARKLNLPPECVNKTPSGETFVKSNLQKGILPEILEE 579
F+SLYPSIMMA+NLCY+TL+ P A+KL L P+ KTP+G+ FVK++++KG+LP+ILE
Sbjct: 599 FSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEFIKTPTGDEFVKASVRKGLLPQILEN 658
Query: 580 LLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTS 639
LL+ARKRAKA+L + DPL + VLDGRQLALK+S NSVYGFTGA VG+LPC+EIS SVT
Sbjct: 659 LLSARKRAKAELAQETDPLRRQVLDGRQLALKVSPNSVYGFTGAQVGKLPCLEISQSVTG 718
Query: 640 YGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYI 699
+GRQMIE TK+LVE K+T GY+ NA+V+YGDTDSVM +FGV +V AM LGREAA+++
Sbjct: 719 FGRQMIEKTKQLVETKYTLENGYDANAKVVYGDTDSVMCRFGVSSVAEAMSLGREAANWV 778
Query: 700 SGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTN-PEKFDKMDTKGIETVRRDNCLLVKN 758
S F PI+LEFEKVY+PYLLISKKRYAGL +++ + D+MD KG+E VRRDNC LV N
Sbjct: 779 SSHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSSRSDAHDRMDCKGLEAVRRDNCPLVAN 838
Query: 759 LVTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVE 818
LVT L +ILVDRD GAV + K ISDLL NR+D+S LVITK LT+ DY K AHVE
Sbjct: 839 LVTSSLRRILVDRDPDGAVAHAKDVISDLLCNRIDISQLVITKELTRAAADYAGKQAHVE 898
Query: 819 LAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQI 878
LAERMRKRD +APN+GDRVPYVII AAKG AY +SEDP++VLE+++PIDT YYLE Q+
Sbjct: 899 LAERMRKRDPGSAPNLGDRVPYVIIGAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQL 958
Query: 879 SKPLLRIFEPILKNASKE--LLSGDHTRSISISTPSNSGIMKFAKRQLSCIGCKALISN- 935
+KPLLRIFEPIL E LL GDHTR ++ T G++ F KR+ SCIGC+++I +
Sbjct: 959 AKPLLRIFEPILGEGRAESVLLRGDHTRCKTVLTSKVGGLLAFTKRRNSCIGCRSVIDHQ 1018
Query: 936 GTLCSHCKGREAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRR 995
G +C C+ RE+ELY K VS + LE F RLWTQCQ CQGSLH+DV+CTSRDCPIFY R
Sbjct: 1019 GAVCKFCQPRESELYQKEVSHLNALEERFSRLWTQCQRCQGSLHEDVICTSRDCPIFYMR 1078
Query: 996 KKAQKDMAEAKLQLDRWN 1013
KK +KD+ + + L R+
Sbjct: 1079 KKVRKDLEDQERLLQRFG 1096
Score = 326 bits (835), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 161/334 (48%), Positives = 214/334 (64%), Gaps = 8/334 (2%)
Query: 74 KWARP-PLSSGYVSQCQSIMFQQLDIDYVIGDSNR--ELLPLSSGSAAIIRIFGVTREGH 130
+W RP PL+ + ++FQQL+ID+ +G S E P S S I+R FGVT EG
Sbjct: 74 RWLRPTPLA--LDPSTEPLIFQQLEIDHYVGTSPPLPEGPPASRNSVPILRAFGVTDEGF 131
Query: 131 SVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANRNSK--VPQFVRHIEMVQK 188
SVCC +HGF PYFY P G G + +S + L + R K V IE+ +
Sbjct: 132 SVCCHIHGFAPYFYTPAPPGFGAEHLSELQRELNAAISRDQRGGKELSGPAVLAIELCSR 191
Query: 189 RSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFMTYESNVLFALRFM 248
S+ Y PFL+I +ALP ++A R +L++GI++ GLG SF YE+NV F +RFM
Sbjct: 192 ESMFGYHGHGPSPFLRITLALPRLMAPARRLLEQGIRVPGLGTPSFAPYEANVDFEIRFM 251
Query: 249 IDCNIVGGNWIEVPVGKY-RKTAKTLSYCQLEFDCLYSDIISRHPEGEFSKMAPFRILSF 307
+D +IVG NW+E+P GKY R+ K + CQLE D L+SD+IS PEG++ ++AP R+LSF
Sbjct: 252 VDADIVGCNWLELPAGKYVRRAEKKATLCQLEVDVLWSDVISHPPEGQWQRIAPLRVLSF 311
Query: 308 DIECAGRKGHFPEPTHDPVIQVANLVTLQGEKQPFIRNVMTLKSCAPIVGVDVMSFETER 367
DIECAGRKG FPEP DPVIQ+ +L GE +PF+R +TL+ CAPI+G V S+E E
Sbjct: 312 DIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTLRPCAPILGAKVQSYEREE 371
Query: 368 DVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
D+L AW FI +DPDV+ GYNI FDLPYLI +
Sbjct: 372 DLLQAWATFILAMDPDVITGYNIQNFDLPYLISR 405
>sp|P97283|DPOD1_MESAU DNA polymerase delta catalytic subunit OS=Mesocricetus auratus
GN=POLD1 PE=2 SV=1
Length = 1103
Score = 796 bits (2056), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/618 (63%), Positives = 486/618 (78%), Gaps = 6/618 (0%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+KEDV HSII+DLQNGN +TRRRLAVYCL+DA+LP RLL++LM + N VEMARVTGVP+
Sbjct: 481 QKEDVQHSIITDLQNGNEQTRRRLAVYCLRDAFLPLRLLERLMVLVNNVEMARVTGVPLG 540
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLD 519
+LLSRGQ +KV+SQLLR+A ++ L++P VK G E Y GATV+E G+Y+ PIATLD
Sbjct: 541 YLLSRGQQVKVVSQLLRQAMRQGLLMPVVKTEGGED--YTGATVIEPLKGYYDVPIATLD 598
Query: 520 FASLYPSIMMAYNLCYSTLVTPEDARKLNLPPECVNKTPSGETFVKSNLQKGILPEILEE 579
F+SLYPSIMMA+NLCY+TL+ P A+KL L P+ KTP+G+ FVKS+++KG+LP+ILE
Sbjct: 599 FSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEFIKTPTGDEFVKSSVRKGLLPQILEN 658
Query: 580 LLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTS 639
LL+ARKRAKA+L + DPL + VLDGRQLALK+SANSVYGFTGA VG+LPC+EIS SVT
Sbjct: 659 LLSARKRAKAELAQETDPLRRQVLDGRQLALKVSANSVYGFTGAEVGKLPCLEISQSVTG 718
Query: 640 YGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYI 699
+GRQMIE TK+LVE K+T GY NA+V+YGDTDSVM +FGV +V AM LGREAA+++
Sbjct: 719 FGRQMIEKTKQLVESKYTLENGYNANAKVVYGDTDSVMCRFGVSSVAEAMSLGREAANWV 778
Query: 700 SGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTN-PEKFDKMDTKGIETVRRDNCLLVKN 758
S F PI+LEFEKVY+PYLLISKKRYAGL +++ P+ D+MD KG+E VRRDNC LV N
Sbjct: 779 SSHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSSQPDTHDRMDCKGLEAVRRDNCPLVAN 838
Query: 759 LVTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVE 818
LVT L +ILVDRD GAV + K ISDLL NR+D+S LVITK LT+ DY K AHVE
Sbjct: 839 LVTSSLRRILVDRDPDGAVAHAKDVISDLLCNRIDISQLVITKELTRAAADYAGKQAHVE 898
Query: 819 LAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQI 878
LAERMRKRD +AP++GDRVPYVII AAKG AY +SEDP++VLE+++PIDT YYL Q+
Sbjct: 899 LAERMRKRDPGSAPSLGDRVPYVIIGAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLGQQL 958
Query: 879 SKPLLRIFEPILKNASKE--LLSGDHTRSISISTPSNSGIMKFAKRQLSCIGCKALISN- 935
+KPLLRIFEPIL E LL GDHTR ++ T G++ F KR+ CIGC+++I++
Sbjct: 959 AKPLLRIFEPILGEGRAESVLLRGDHTRCKTVLTSKVGGLLAFTKRRNCCIGCRSVINHQ 1018
Query: 936 GTLCSHCKGREAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRR 995
G +C C+ RE+ELY K VS + LE F RLWTQCQ CQGSLH+DV+CTSRDCPIFY R
Sbjct: 1019 GAVCEFCQPRESELYQKEVSHLNALEERFSRLWTQCQRCQGSLHEDVICTSRDCPIFYMR 1078
Query: 996 KKAQKDMAEAKLQLDRWN 1013
KK +KD+ + + L R+
Sbjct: 1079 KKVRKDLEDQERLLQRFG 1096
Score = 324 bits (830), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 160/337 (47%), Positives = 215/337 (63%), Gaps = 14/337 (4%)
Query: 74 KWARPPLSSGYVSQCQSIMFQQLDIDYVIGDSNRELLPLSSG------SAAIIRIFGVTR 127
+W RP L + + ++FQQL+ID+ +G + +PL G S I+R FGVT
Sbjct: 74 RWKRPALCA-LDPNTEPLIFQQLEIDHYVGSA----VPLPGGPPTSCNSVPILRAFGVTD 128
Query: 128 EGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANRNSK--VPQFVRHIEM 185
EG SVCC +HGF PYFY P G G + +S + L + R K V IE+
Sbjct: 129 EGFSVCCHIHGFAPYFYTPAPPGFGAEHLSDLQRELSTAISRDQRGGKELSGPAVLAIEL 188
Query: 186 VQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFMTYESNVLFAL 245
+ S+ Y PFL+I +ALP +VA R +L++GI++ GLG SF YE+NV F +
Sbjct: 189 CSRESMFGYHGHGPSPFLRITLALPRLVAPARRLLEQGIRVPGLGTPSFAPYEANVDFEI 248
Query: 246 RFMIDCNIVGGNWIEVPVGKY-RKTAKTLSYCQLEFDCLYSDIISRHPEGEFSKMAPFRI 304
RFM+D +IVG NW+E+P GKY +T K + CQLE D L+SD+IS PEG++ ++AP R+
Sbjct: 249 RFMVDADIVGCNWLELPAGKYVWRTEKKATQCQLEVDVLWSDVISHPPEGQWQRIAPLRV 308
Query: 305 LSFDIECAGRKGHFPEPTHDPVIQVANLVTLQGEKQPFIRNVMTLKSCAPIVGVDVMSFE 364
LSFDIECAGRKG FPEP DPVIQ+ +L GE +PF+R +TL+ CAPI+G V S+E
Sbjct: 309 LSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTLRPCAPILGAKVQSYE 368
Query: 365 TERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
E D+L AW +FI +DPDV+ GYNI FDLPYLI +
Sbjct: 369 REEDLLQAWPNFILAMDPDVITGYNIQNFDLPYLISR 405
>sp|P28339|DPOD1_BOVIN DNA polymerase delta catalytic subunit OS=Bos taurus GN=POLD1 PE=1
SV=1
Length = 1106
Score = 796 bits (2056), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/618 (62%), Positives = 487/618 (78%), Gaps = 6/618 (0%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+KEDV HSII+DLQNGN +TRRRLAVYCLKDA+LP RLL++LM + N +EMARVTGVP+
Sbjct: 484 QKEDVQHSIITDLQNGNDQTRRRLAVYCLKDAFLPLRLLERLMVLVNAMEMARVTGVPLG 543
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLD 519
+LLSRGQ +KV+SQLLR+A ++ L++P VK G E Y GATV+E G+Y+ PIATLD
Sbjct: 544 YLLSRGQQVKVVSQLLRQAMRQGLLMPVVKTEGGED--YTGATVIEPLKGYYDVPIATLD 601
Query: 520 FASLYPSIMMAYNLCYSTLVTPEDARKLNLPPECVNKTPSGETFVKSNLQKGILPEILEE 579
F+SLYPSIMMA+NLCY+TL+ P A+KL L + KTP+G+ FVK++++KG+LP+ILE
Sbjct: 602 FSSLYPSIMMAHNLCYTTLLRPGAAQKLGLTEDQFIKTPTGDEFVKASVRKGLLPQILEN 661
Query: 580 LLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTS 639
LL+ARKRAKA+L + DPL + VLDGRQLALK+SANSVYGFTGA VG+LPC+EIS SVT
Sbjct: 662 LLSARKRAKAELAKETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGRLPCLEISQSVTG 721
Query: 640 YGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYI 699
+GRQMIE TK+LVE K+T GY +A+V+YGDTDSVM +FGV +V AM LGREAAD++
Sbjct: 722 FGRQMIEKTKQLVETKYTVENGYSTSAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWV 781
Query: 700 SGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTN-PEKFDKMDTKGIETVRRDNCLLVKN 758
SG F PI+LEFEKVY+PYLLISKKRYAGL +++ P+ D+MD KG+E VRRDNC LV N
Sbjct: 782 SGHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSSRPDAHDRMDCKGLEAVRRDNCPLVAN 841
Query: 759 LVTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVE 818
LVT L ++L+DRD GAV + + ISDLL NR+D+S LVITK LT+ DY K AHVE
Sbjct: 842 LVTASLRRLLIDRDPSGAVAHAQDVISDLLCNRIDISQLVITKELTRAAADYAGKQAHVE 901
Query: 819 LAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQI 878
LAERMRKRD +AP++GDRVPYVII AAKG AY +SEDP++VLE+++PIDT YYLE Q+
Sbjct: 902 LAERMRKRDPGSAPSLGDRVPYVIISAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQL 961
Query: 879 SKPLLRIFEPILKNASKE--LLSGDHTRSISISTPSNSGIMKFAKRQLSCIGCKALISN- 935
+KPLLRIFEPIL E LL GDHTR ++ T G++ FAKR+ CIGC+ ++S+
Sbjct: 962 AKPLLRIFEPILGEGRAEAVLLRGDHTRCKTVLTGKVGGLLAFAKRRNCCIGCRTVLSHQ 1021
Query: 936 GTLCSHCKGREAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRR 995
G +C C+ RE+ELY K VS + LE F RLWTQCQ CQGSLH+DV+CTSRDCPIFY R
Sbjct: 1022 GAVCKFCQPRESELYQKEVSHLSALEERFSRLWTQCQRCQGSLHEDVICTSRDCPIFYMR 1081
Query: 996 KKAQKDMAEAKLQLDRWN 1013
KK +KD+ + + L R+
Sbjct: 1082 KKVRKDLEDQERLLRRFG 1099
Score = 325 bits (833), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 163/336 (48%), Positives = 214/336 (63%), Gaps = 10/336 (2%)
Query: 73 AKWARPPLSSGYVSQCQSIMFQQLDIDYVIGDSNRELL---PLSSGSAAIIRIFGVTREG 129
A+W RP Q + ++FQQL+ID+ + + R L P S S I+R FGVT EG
Sbjct: 76 ARWLRP-APPALDPQMEPLIFQQLEIDHYVAPA-RPLPGAPPPSQDSVPILRAFGVTNEG 133
Query: 130 HSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANRNSK--VPQFVRHIEMVQ 187
SVCC +HGF PYFY P G GP+ +S + L + R K V +E+
Sbjct: 134 VSVCCHIHGFAPYFYTPAPPGFGPEHLSELQRELSAAISRDQRGGKELTGPAVLAVELCS 193
Query: 188 KRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFMTYESNVLFALRF 247
+ S+ Y PFL+I +ALP ++A R +L++GI+L GLG SF YE+NV F +RF
Sbjct: 194 RESMFGYHGHGPSPFLRITLALPRLMAPARRLLEQGIRLAGLGTPSFAPYEANVDFEIRF 253
Query: 248 MIDCNIVGGNWIEVPVGKY--RKTAKTLSYCQLEFDCLYSDIISRHPEGEFSKMAPFRIL 305
M+D +IVG NW+E+P GKY R K + CQLE D L+SD+IS PEGE+ ++AP R+L
Sbjct: 254 MVDTDIVGCNWLELPAGKYILRPEGKA-TLCQLEADVLWSDVISHPPEGEWQRIAPLRVL 312
Query: 306 SFDIECAGRKGHFPEPTHDPVIQVANLVTLQGEKQPFIRNVMTLKSCAPIVGVDVMSFET 365
SFDIECAGRKG FPEP DPVIQ+ +L GE +PF+R +TL+ CAPI+G V S+E
Sbjct: 313 SFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTLRPCAPILGAKVQSYER 372
Query: 366 ERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
E D+L AW FIR +DPDV+ GYNI FDLPYLI +
Sbjct: 373 EEDLLQAWSTFIRIMDPDVITGYNIQNFDLPYLISR 408
>sp|P46588|DPOD_CANAX DNA polymerase delta catalytic subunit OS=Candida albicans GN=POL3
PE=3 SV=2
Length = 1038
Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/620 (62%), Positives = 484/620 (78%), Gaps = 10/620 (1%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+KEDV HSII+DLQNG ETRRRLAVYCLKDA+LP RLLDKLM + NY EMARVTGVP S
Sbjct: 419 QKEDVQHSIITDLQNGTKETRRRLAVYCLKDAFLPLRLLDKLMCLVNYTEMARVTGVPFS 478
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLD 519
+LLSRGQ IKV+SQL RK Q+++VIPN+K GS + YEGATV+E G+Y+ PIATLD
Sbjct: 479 YLLSRGQQIKVISQLFRKCLQEDIVIPNLKSEGSNE-EYEGATVIEPERGYYDVPIATLD 537
Query: 520 FASLYPSIMMAYNLCYSTLVTPEDARKLNLPPECVNKTPSGETFVKSNLQKGILPEILEE 579
F+SLYPSIMMA+NLCY+TL+ + L + KTP+G+ FV SNL+KGILP IL+E
Sbjct: 538 FSSLYPSIMMAHNLCYTTLLNKNSIKAFGLTEDDYTKTPNGDYFVHSNLRKGILPTILDE 597
Query: 580 LLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTS 639
LL ARK+AKADLK+ DP +K VL+GRQLALKISANSVYGFTGATVG+LPC+ ISSSVT+
Sbjct: 598 LLTARKKAKADLKKETDPFKKDVLNGRQLALKISANSVYGFTGATVGKLPCLAISSSVTA 657
Query: 640 YGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYI 699
+GR+MIE TK V++ ++ G+ ++A+VIYGDTDSVMV+FG +E MKLG EAA+Y+
Sbjct: 658 FGREMIEKTKNEVQEYYSKKNGHPYDAKVIYGDTDSVMVKFGYQDLETCMKLGEEAANYV 717
Query: 700 SGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNL 759
S F PIKLEFEKVY+PYLLI+KKRYAGLYWT PEKFDKMDTKGIETVRRDNC LV+N+
Sbjct: 718 STKFKNPIKLEFEKVYFPYLLINKKRYAGLYWTRPEKFDKMDTKGIETVRRDNCRLVQNV 777
Query: 760 VTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVEL 819
+T+ L IL +RD+P A ++VK TI+DLL NR+DLS LVITK +K DY K AHVEL
Sbjct: 778 ITKVLEFILEERDVPKAQRFVKQTIADLLQNRIDLSQLVITKAYSK--HDYSAKQAHVEL 835
Query: 820 AERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQIS 879
AERMRKRD +AP +GDRV YVIIK G K YE+SEDP+YVLEN++PID YYL+ Q++
Sbjct: 836 AERMRKRDPGSAPTLGDRVAYVIIKTG-GDKNYEKSEDPLYVLENSLPIDVKYYLDQQLT 894
Query: 880 KPLLRIFEPIL-KNASKELLSGDHTRSISISTPSNSGIMKFAKRQLSCIGCKALISN--- 935
KPL RIF PIL + +KELL+G HTR+I ++ P G+++FAK+ C+ C+ +
Sbjct: 895 KPLERIFIPILGETKTKELLTGSHTRTIKVAAPKTGGLLRFAKKSEVCVSCRTPLKKDNL 954
Query: 936 GTLCSHC--KGREAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFY 993
G LC +C G+ +LY +SQ+ LE F RLWT+CQ CQGSLHQ+VLC+++DCPIFY
Sbjct: 955 GALCPNCIKDGKGPDLYGNALSQMNYLENKFSRLWTECQRCQGSLHQEVLCSNKDCPIFY 1014
Query: 994 RRKKAQKDMAEAKLQLDRWN 1013
R KAQKD+ + L+L +W+
Sbjct: 1015 MRTKAQKDVHQQALELVKWD 1034
Score = 253 bits (646), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 134/327 (40%), Positives = 182/327 (55%), Gaps = 32/327 (9%)
Query: 75 WARPPLSSGYVSQCQSIMFQQLDIDYVIGDSNRELLPLSSGSAAIIRIFGVTREGHSVCC 134
W RPPL S + + I FQQLD + N R FG+T+EGHSV C
Sbjct: 49 WDRPPLPSSF----EDISFQQLDAEEYHDRGN-----------TYARFFGITQEGHSVLC 93
Query: 135 KVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANRNSKVPQFVRHIEMVQKRSIMYY 194
V GF YFY P+G ++++ F L+ R +E+ K SI Y
Sbjct: 94 NVTGFIHYFYCPVPKGF-EENLTEFTNYLKATFDGIER----------VEITSKESIWGY 142
Query: 195 QQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFMTYESNVLFALRFMIDCNIV 254
PF KI ++ R G Q+ + +TY+ N+ + LR MIDC I
Sbjct: 143 SNNIKTPFFKIFAK--NNISKIRSAFQNG-QVHNID--PCITYD-NINYLLRLMIDCKIT 196
Query: 255 GGNWIEVPVGKYRKTAKTLSYCQLEFDCLYSDIISRHPEGEFSKMAPFRILSFDIECAGR 314
G +WI +P KY+ +S CQ+E Y D+IS PEGE+ KMAP RILSFDIECAGR
Sbjct: 197 GMSWITLPRDKYKIVNNKISTCQIECSIDYRDLISHPPEGEWLKMAPLRILSFDIECAGR 256
Query: 315 KGHFPEPTHDPVIQVANLVTLQGEKQPFIRNVMTLKSCAPIVGVDVMSFETERDVLLAWR 374
KG FPE HDPVIQ+AN+V GE +PF+RNV T+ +C+ I+G + + E D+L+ W+
Sbjct: 257 KGVFPEAEHDPVIQIANVVQKSGESKPFVRNVFTVNTCSSIIGSQIFEHQREEDMLMHWK 316
Query: 375 DFIREVDPDVMIGYNICKFDLPYLIEK 401
+FI +VDPDV+IGYN FD+PY++ +
Sbjct: 317 EFITKVDPDVIIGYNTANFDIPYVLNR 343
>sp|P54358|DPOD1_DROME DNA polymerase delta catalytic subunit OS=Drosophila melanogaster
GN=DNApol-delta PE=2 SV=2
Length = 1092
Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/624 (62%), Positives = 478/624 (76%), Gaps = 12/624 (1%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+KEDVHHSII+DLQNG+ +TRRRLA+YCLKDAYLP RLL+KLM I NY+EMARVTGVP+
Sbjct: 469 QKEDVHHSIITDLQNGDEQTRRRLAMYCLKDAYLPLRLLEKLMAIVNYMEMARVTGVPLE 528
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLD 519
LL+RGQ IKVLSQLLRKAK K ++P+ GS++ YEGATV+E + G+Y PI+TLD
Sbjct: 529 SLLTRGQQIKVLSQLLRKAKTKGFIMPSYTSQGSDE-QYEGATVIEPKRGYYADPISTLD 587
Query: 520 FASLYPSIMMAYNLCYSTLVTPEDARKL----NLPPECVNKTPSGETFVKSNLQKGILPE 575
FASLYPSIMMA+NLCY+TLV KL NL + V +TP+ FVKS +++G+LPE
Sbjct: 588 FASLYPSIMMAHNLCYTTLVLGGTREKLRQQENLQDDQVERTPANNYFVKSEVRRGLLPE 647
Query: 576 ILEELLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISS 635
ILE LLAARKRAK DLK DP ++ VLDGRQLALKISANSVYGFTGA VG+LPC+EIS
Sbjct: 648 ILESLLAARKRAKNDLKVETDPFKRKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISG 707
Query: 636 SVTSYGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREA 695
SVT+YGR MIE TK VE +T GYE+NA VIYGDTDSVMV FGV T+E +M+LGREA
Sbjct: 708 SVTAYGRTMIEMTKNEVESHYTQANGYENNAVVIYGDTDSVMVNFGVKTLERSMELGREA 767
Query: 696 ADYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLL 755
A+ +S F+ PIKLEFEKVYYPYLLI+KKRYAGLY+T P+ +DKMD KGIETVRRDN L
Sbjct: 768 AELVSSKFVHPIKLEFEKVYYPYLLINKKRYAGLYFTRPDTYDKMDCKGIETVRRDNSPL 827
Query: 756 VKNLVTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAA 815
V NL+ CL K+L++RD GAV YVK I+DLL NR+D+S LVITK L KT DY K A
Sbjct: 828 VANLMNSCLQKLLIERDPDGAVAYVKQVIADLLCNRIDISHLVITKELAKT--DYAAKQA 885
Query: 816 HVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLE 875
HVELA +M+KRD TAP +GDRVPYVI AAK AY+++EDP+YVLEN++PID YYLE
Sbjct: 886 HVELAAKMKKRDPGTAPKLGDRVPYVICAAAKNTPAYQKAEDPLYVLENSVPIDATYYLE 945
Query: 876 NQISKPLLRIFEPIL-KNASKELLSGDHTRSISISTPSNSGIMKFAKRQLSCIGCKALIS 934
Q+SKPLLRIFEPIL NA LL G+HTR+ ++ T G+ F ++ SC+GCK+L+
Sbjct: 946 QQLSKPLLRIFEPILGDNAESILLKGEHTRTRTVVTSKVGGLAGFMTKKTSCLGCKSLMP 1005
Query: 935 NG----TLCSHCKGREAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCP 990
G LC HC+ R +ELY K V +ELE F RLWT+CQ CQ SLH++V+C++RDCP
Sbjct: 1006 KGYEQACLCPHCEPRMSELYQKEVGAKRELEETFSRLWTECQRCQESLHEEVICSNRDCP 1065
Query: 991 IFYRRKKAQKDMAEAKLQLDRWNF 1014
IFY R+K + D+ + ++ R+
Sbjct: 1066 IFYMRQKVRMDLDNQEKRVLRFGL 1089
Score = 301 bits (770), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 162/385 (42%), Positives = 230/385 (59%), Gaps = 13/385 (3%)
Query: 25 QATTPTTPVIDDEFLDEDVFLDETLLPED-EESLILRDIEQRQDFASRLAKWARPPLSSG 83
A P P DDE + + L ED +++L++ D + Q + R W+RPP
Sbjct: 14 HAKKPRNP-DDDEEMGFEAELAAFENSEDMDQTLLMGDGPENQTTSER---WSRPPPPEL 69
Query: 84 YVSQCQSIMFQQLDIDYVIGDSNRELLPLSSGSAAIIRIFGVTREGHSVCCKVHGFEPYF 143
S+ ++ FQQLD++ +G + G ++R+FGVT EG+SVCC VHGF PYF
Sbjct: 70 DPSK-HNLEFQQLDVENYLGQPLPGMPGAQIGPVPVVRMFGVTMEGNSVCCHVHGFCPYF 128
Query: 144 YISCPQGMGPDDISHFHQILEGRMREANRNSK--VPQFVRHIEMVQKRSIMYYQQQKSQP 201
YI P + L+ ++ RN+K V + V +E+V+K +I Y K Q
Sbjct: 129 YIEAPSQFEEHHCEKLQKALDQKVIADIRNNKDNVQEAVLMVELVEKLNIHGYNGDKKQR 188
Query: 202 FLKIVVALPTMVASCRGILDRGIQLDGLGMKSFMTYESNVLFALRFMIDCNIVGGNWIEV 261
++KI V LP VA+ +L + + + + + +E+N+ F +RFM+D ++VG NWIE+
Sbjct: 189 YIKISVTLPRFVAAASRLLKKEVIMSEIDFQDCRAFENNIDFDIRFMVDTDVVGCNWIEL 248
Query: 262 PVGKYR---KTAKTL--SYCQLEFDCLYSDIISRHPEGEFSKMAPFRILSFDIECAGRKG 316
P+G +R +K L S CQ+E D + IS PEGE+SK+APFRILSFDIECAGRKG
Sbjct: 249 PMGHWRIRNSHSKPLPESRCQIEVDVAFDRFISHEPEGEWSKVAPFRILSFDIECAGRKG 308
Query: 317 HFPEPTHDPVIQVANLVTLQGEKQPFIRNVMTLKSCAPIVGVDVMSFETERDVLLAWRDF 376
FPE DPVIQ+AN+V QGE++PFIRNV TL CAPI+G V+ + E +L W F
Sbjct: 309 IFPEAKIDPVIQIANMVIRQGEREPFIRNVFTLNECAPIIGSQVLCHDKETQMLDKWSAF 368
Query: 377 IREVDPDVMIGYNICKFDLPYLIEK 401
+REVDPD++ GYNI FD PYL+ +
Sbjct: 369 VREVDPDILTGYNINNFDFPYLLNR 393
>sp|Q54N97|DPOD1_DICDI DNA polymerase delta catalytic subunit OS=Dictyostelium discoideum
GN=pold1 PE=3 SV=1
Length = 1104
Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/618 (59%), Positives = 475/618 (76%), Gaps = 10/618 (1%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+KEDVH SIISDLQNG + RRRLAVYC+KDA LP RLLDKLM + NY EMARVTGVP+S
Sbjct: 490 QKEDVHFSIISDLQNGTDDDRRRLAVYCIKDAVLPMRLLDKLMILINYTEMARVTGVPLS 549
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLD 519
+LL RG+ IKVLSQL RKA +N +IP K G + ++GA V+E GFY+ PIATLD
Sbjct: 550 YLLGRGEGIKVLSQLYRKAMVENFLIPTYKVTGKGE-KFQGAIVIEPTPGFYDTPIATLD 608
Query: 520 FASLYPSIMMAYNLCYSTLVTPEDARKLNLPPECVNKTPSGETFVKSNLQKGILPEILEE 579
F SLYPSIMMA+NLCYSTL++ E+A+KL PPE TP G+ F+KS+ +KG+LP ILEE
Sbjct: 609 FTSLYPSIMMAHNLCYSTLLSAEEAKKL--PPEIYTTTPFGDHFIKSDTKKGLLPRILEE 666
Query: 580 LLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTS 639
LL+ARK+AK +LK KDP ++AVLDGRQLALKISANSVYGFTGA VG+LPC+EIS SVTS
Sbjct: 667 LLSARKKAKDELKNEKDPFKRAVLDGRQLALKISANSVYGFTGARVGKLPCLEISRSVTS 726
Query: 640 YGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYI 699
+GR+M++ TKK+VE+++T GY+H+A +IYGDTDSVMV+FGV TV AM++GR+AA ++
Sbjct: 727 FGREMLDKTKKIVEERYTIANGYKHDAVIIYGDTDSVMVKFGVKTVAEAMEMGRDAAKFV 786
Query: 700 SGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNL 759
+ TFI+PI L+FEKVYYPYLL++KK+YAGLYWT P+ D+MD KG+E VRRD CLLV+N+
Sbjct: 787 TTTFIRPINLDFEKVYYPYLLMAKKKYAGLYWTKPDIHDRMDVKGLEMVRRDTCLLVRNV 846
Query: 760 VTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVEL 819
V+ L KIL+++D+ A +Y KS ISDLL NR+DLS+LVITK L+KT Y+ K H EL
Sbjct: 847 VSTILKKILIEKDLKSAEEYTKSVISDLLQNRLDLSMLVITKALSKT--QYKGKVIHNEL 904
Query: 820 AERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQIS 879
A +MR RD ATAPN+GDRVPYV+I+ +KGA YE++EDP+Y LE+NI +D YYL+ Q+
Sbjct: 905 ARKMRARDPATAPNLGDRVPYVVIQGSKGAPIYEKAEDPLYALEHNILLDCQYYLDKQLK 964
Query: 880 KPLLRIFEPILKNASKELLSGDHTRSISISTPS--NSGIMKFAKRQLSCIGCKALISN-- 935
PL+RIF+PI+ N + G+HTR+I+ ST S N G K++ C+ C +++
Sbjct: 965 APLIRIFKPIMSNPDL-IFHGEHTRTIAQSTLSDNNKGFFGTLKKKKVCMNCPKELTDTE 1023
Query: 936 GTLCSHCKGREAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRR 995
T C +C+ +EA LY ++ +V LE F WTQCQ C GSLHQ VLC++RDCPIFY R
Sbjct: 1024 STTCINCQHKEASLYQTSLEKVTSLETKFSEAWTQCQRCSGSLHQPVLCSNRDCPIFYMR 1083
Query: 996 KKAQKDMAEAKLQLDRWN 1013
K Q D+ EAK L+R+N
Sbjct: 1084 TKVQLDLIEAKKTLNRFN 1101
Score = 293 bits (749), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 151/348 (43%), Positives = 209/348 (60%), Gaps = 11/348 (3%)
Query: 61 DIEQRQDFASRLAKWARPPLSSGYVSQCQSIMFQQLDIDYV-IGDSNRELLPLSSGSAAI 119
DI+ + D + +L W+R P+ V + ++FQQL++DY I + + G
Sbjct: 71 DIDIQDDGSQQLFLWSRKPVQD-LVPHKKPLIFQQLEVDYTEIKEPVPGMPGPKVGPLPA 129
Query: 120 IRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANRNSK---V 176
IR+FGVT+EG+SV CKVHGF PYF+ISCP G D L M+ ++ S +
Sbjct: 130 IRLFGVTKEGNSVLCKVHGFLPYFFISCPPGFTEADCKSLKHDLNESMKMSSNQSNEKDI 189
Query: 177 PQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRG---IQLDGLGMKS 233
V I++ +K+SIM Y F++I + LP V CR I + G + G +
Sbjct: 190 ENIVVSIDIEKKKSIMGYNPNPLSDFIRITLILPKFVTRCREIFESGRHHFTIPGQPFRQ 249
Query: 234 FMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAKTLSYCQLEFDCLYSDIISRHPE 293
+ TYESN+LFALRF+ID I G +WIE+P Y+ + +S CQ+E D IIS +
Sbjct: 250 YQTYESNILFALRFLIDKGITGCSWIELPANTYKLSETPVSTCQIEVDTSLETIISLSDD 309
Query: 294 GEFSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQVANLVTLQGEKQPFIRNVMTLKSCA 353
AP+RILSFDIECAGRKG FPEP DPVIQ++N+V G+ +PFI+N+ TLK C+
Sbjct: 310 ---DSPAPYRILSFDIECAGRKGVFPEPEKDPVIQISNIVKNNGDAEPFIKNIFTLKGCS 366
Query: 354 PIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
IVG V+ + E D+L WR F+ +VDPDV+IGYNI FD+PYLI +
Sbjct: 367 SIVGAHVIPHKREEDLLREWRKFVIKVDPDVIIGYNIVNFDIPYLISR 414
>sp|P90829|DPOD1_CAEEL DNA polymerase delta catalytic subunit OS=Caenorhabditis elegans
GN=F10C2.4 PE=3 SV=1
Length = 1081
Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/622 (55%), Positives = 460/622 (73%), Gaps = 14/622 (2%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+KEDV H+II DLQ G+ +TRRRLA YCLKDAYLP RLLDKLM I NY+EMARVTGVP++
Sbjct: 455 QKEDVEHNIIPDLQRGDEQTRRRLAQYCLKDAYLPLRLLDKLMSIINYIEMARVTGVPMN 514
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLD 519
FLL++GQ IK+LS +LR+ KQ N +P ++ + YEGATV++ GFY +PIATLD
Sbjct: 515 FLLTKGQQIKILSMMLRRCKQNNFFLPVIEANSGDGEGYEGATVIDPIRGFYNEPIATLD 574
Query: 520 FASLYPSIMMAYNLCYSTLV-TPEDARKLNLPPECVNKTPSGETFVKSNLQKGILPEILE 578
FASLYPSIM+A+NLCY+TL+ +P+ E +TPSG+ F + ++G+LPEILE
Sbjct: 575 FASLYPSIMIAHNLCYTTLLKSPQGVEN-----EDYIRTPSGQYFATKSKRRGLLPEILE 629
Query: 579 ELLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVT 638
++LAARKRAK D+K KD ++ V +GRQLALKISANSVYGFTGATVG+LPC+EIS SVT
Sbjct: 630 DILAARKRAKNDMKNEKDEFKRMVYNGRQLALKISANSVYGFTGATVGKLPCLEISQSVT 689
Query: 639 SYGRQMIEHTKKLVE---DKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREA 695
++GR+MI+ TK VE K G +A+VIYGDTDSVMV+FGV TV AM++G +A
Sbjct: 690 AFGRKMIDMTKLEVERIYKKGALDGKCPADAKVIYGDTDSVMVKFGVETVAQAMEIGLDA 749
Query: 696 ADYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLL 755
A +S F PIKLEFEKVY PYLLI+KKRYAGLY+T P+ DKMD KG+ETVRRDNC L
Sbjct: 750 AKEVSKIFTPPIKLEFEKVYSPYLLINKKRYAGLYFTKPDVHDKMDCKGLETVRRDNCPL 809
Query: 756 VKNLVTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAA 815
V ++ CL K+L++RD A+ + K TISDLL N++D+SLL+I+K LTK+GD Y+ K A
Sbjct: 810 VAKVLGVCLEKLLIERDQQSALDFAKRTISDLLCNKIDISLLIISKELTKSGDKYQAKQA 869
Query: 816 HVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLE 875
HVELA RM+KRDA +AP +GDRVPYV + AAK AYER+EDP +VL+NNIP+DT +YL
Sbjct: 870 HVELAARMKKRDAGSAPRLGDRVPYVFVAAAKNVPAYERAEDPTFVLQNNIPLDTKHYLT 929
Query: 876 NQISKPLLRIFEPILKN-ASKELLSGDHTRSISISTPSNSGIMKFAKRQLSCIGCKALI- 933
NQ++KPL RIFEPIL + A K L+ G+HTR ++ G+ F + +C+GCK+++
Sbjct: 930 NQLAKPLARIFEPILGDRAEKILVEGEHTRVRTVVQSKVGGLAAFTTKSATCLGCKSVLP 989
Query: 934 ---SNGTLCSHCKGREAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCP 990
S +C HC+ + ++ ++ + ELE FGRLWT+CQ C ++ V C++RDCP
Sbjct: 990 RAESENAVCKHCEPKLPTIFASRMNTMHELENHFGRLWTECQNCAKTMQDKVNCSARDCP 1049
Query: 991 IFYRRKKAQKDMAEAKLQLDRW 1012
I+Y R+K + +++EA ++R+
Sbjct: 1050 IYYMREKVRNELSEASAVIERF 1071
Score = 223 bits (568), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 120/343 (34%), Positives = 190/343 (55%), Gaps = 20/343 (5%)
Query: 75 WARPPLSSGYVSQCQSIMFQQLDIDYVIGDSNRELLPLSSGSAAIIRIFGVTREGHSVCC 134
WARP + + +SI Q L+++ D + +S ++++GVT+ G+S+C
Sbjct: 47 WARPAVDKD-LGISKSIACQILEVETYHEDGS-----ATSYDRTNVKLYGVTKSGNSICV 100
Query: 135 KVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANRNS---------KVPQFVRHIEM 185
V + P+FY PQG G + I + + A R KV + H+E+
Sbjct: 101 IVTDYFPHFYFQAPQGFGVEHIGTAQSAICNMVAAAKRRGGSGQAQLPGKVVDNLVHVEI 160
Query: 186 VQKRSIMYYQQQKSQ-PFLKIVVALPTMVASCRGILDRGIQLDGLG-MKSFMTYESNVLF 243
V ++ Y++ ++ PF+K+ + + R L G+ L G G + YESN+
Sbjct: 161 VHGENLYYFRGADTKVPFVKVSGSTEAL-HKARMELKNGVNLMGKGPVNVGNLYESNINV 219
Query: 244 ALRFMIDCNIVGGNWIEVPVGKYR--KTAKTLSYCQLEFDCLYSDIISRHPEGEFSKMAP 301
+ F+ NIVG WIE+P GK R ++ S CQ+E ++I +GE++ +AP
Sbjct: 220 IVMFLAKTNIVGCGWIEIPAGKCRILSNSEKSSRCQIEVTVPVKNLIVHESDGEWAGIAP 279
Query: 302 FRILSFDIECAGRKGHFPEPTHDPVIQVANLVTLQGEKQPFIRNVMTLKSCAPIVGVDVM 361
R LS DIEC GR+G FPE DP+IQ+ANLV ++GE +PF+RN L +CAP+VG +++
Sbjct: 280 IRTLSLDIECIGRRGVFPEAIKDPIIQIANLVKIEGEAEPFVRNCFVLGTCAPVVGSNII 339
Query: 362 SFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEKEDV 404
E+ +L W +F+REVDPD++ GYNI FDLPY++++ V
Sbjct: 340 QCVNEKVLLEKWAEFVREVDPDIITGYNILNFDLPYILDRAKV 382
>sp|P30315|DPOD1_PLAFK DNA polymerase delta catalytic subunit OS=Plasmodium falciparum
(isolate K1 / Thailand) GN=POLD1 PE=3 SV=1
Length = 1094
Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/613 (55%), Positives = 452/613 (73%), Gaps = 7/613 (1%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+KEDVH+SI++DLQN + E+R+R+A YC+KD LP RL+DKL+FI+NYVEMARVTG P
Sbjct: 479 QKEDVHYSIMNDLQNESPESRKRIATYCIKDGVLPLRLIDKLLFIYNYVEMARVTGTPFV 538
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLD 519
+LL+RGQ IKV SQL RK K+ N VIP+ + YEGATVLE G+Y +PI+TLD
Sbjct: 539 YLLTRGQQIKVTSQLYRKCKELNYVIPSTYMKVNTNEKYEGATVLEPIKGYYIEPISTLD 598
Query: 520 FASLYPSIMMAYNLCYSTLV-TPEDARKLNLPPECVNKTPSGETFVKSNLQKGILPEILE 578
FASLYPSIM+A+NLCYSTL+ + + L + + FVK N++KGILP I+E
Sbjct: 599 FASLYPSIMIAHNLCYSTLIKSNHEVSDLQNDDITTIQGKNNLKFVKKNVKKGILPLIVE 658
Query: 579 ELLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVG-QLPCIEISSSV 637
EL+ ARK+ K +K K+ + K VL+GRQLALKISANSVYG+TGA+ G QLPC+E++ S+
Sbjct: 659 ELIEARKKVKLLIKNEKNNITKMVLNGRQLALKISANSVYGYTGASSGGQLPCLEVAVSI 718
Query: 638 TSYGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAAD 697
T+ GR MIE TK+ VE + GYEHN+ VIYGDTDSVMV+FG +E AM LG++AA+
Sbjct: 719 TTLGRSMIEKTKERVESFYCKSNGYEHNSTVIYGDTDSVMVKFGTNNIEEAMTLGKDAAE 778
Query: 698 YISGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVK 757
IS F+ PIKLEFEKVY PYLL++KKRYAGL +TNP K DKMD KGIETVRRD C+L++
Sbjct: 779 RISKEFLSPIKLEFEKVYCPYLLLNKKRYAGLLYTNPNKHDKMDCKGIETVRRDFCILIQ 838
Query: 758 NLVTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHV 817
++ L+K+L+++++ A++Y KS I +LL N +D+SLLV+TK L KT DYE + HV
Sbjct: 839 QMMETVLNKLLIEKNLNSAIEYTKSKIKELLTNNIDMSLLVVTKSLGKT--DYETRLPHV 896
Query: 818 ELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQ 877
ELA+++++RD+ATAPNVGDRV Y+I+K KG YER+EDP+YVL+NN+ ID ++YL+
Sbjct: 897 ELAKKLKQRDSATAPNVGDRVSYIIVKGVKGQAQYERAEDPLYVLDNNLAIDYNHYLD-A 955
Query: 878 ISKPLLRIFEPILKNASKELLSGDHTRSISISTPSNSGIMKFAKRQLSCIGCKALISNGT 937
I PL RIFE I++N S L SGDHTR +I T S + + KF K+ + CIGC + I
Sbjct: 956 IKSPLSRIFEVIMQN-SDSLFSGDHTRHKTILTSSQTALSKFLKKSVRCIGCNSSIKKPP 1014
Query: 938 LCSHCK-GREAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRK 996
LC+HCK +E +Y + + + + F +LWT+CQ CQG+LH DV+C +RDCPIFYRR
Sbjct: 1015 LCNHCKENKEFSIYMQKIKDFKNKQNEFFQLWTECQRCQGNLHVDVICMNRDCPIFYRRA 1074
Query: 997 KAQKDMAEAKLQL 1009
K +KD+A + Q+
Sbjct: 1075 KIKKDIANLQEQV 1087
Score = 198 bits (503), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 112/368 (30%), Positives = 184/368 (50%), Gaps = 33/368 (8%)
Query: 66 QDFASRLAKWARP----PLSSGYVSQCQSIMFQQLDIDYVIGDSNRELLPLSSGS----- 116
++F L + RP + + + ++ Q+D+DY + + + ++ SGS
Sbjct: 37 EEFDKLLKNYERPNVYDEIGNATFKNDEDLITFQIDLDYTVENIFKNMIYNESGSNNSIL 96
Query: 117 -------------------AAIIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDIS 157
IIRI+ + ++G SV VH F PYFY+ P +D+
Sbjct: 97 NDIYMPYRILLSKDKNYVSVPIIRIYSLRKDGCSVLINVHNFFPYFYVEKPDDFDNEDLI 156
Query: 158 HFHQILEGRMREANRNSKVPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCR 217
++ + ++ + + IE+V+ S+MY+++ + FLKI V LP MV S +
Sbjct: 157 KLEMLMNENLNLNSQYKIYEKKILKIEIVKTESLMYFKKNGKKDFLKITVLLPKMVPSLK 216
Query: 218 GILDRGIQLDGLGMKSFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKY--RKTAKTLSY 275
+ + ++ + + YE+N+ F LR++ID I G +WI G Y R K +S
Sbjct: 217 KYFEGIVHVNNKSIGG-IVYEANLPFILRYIIDHKITGSSWINCKKGHYYIRNKNKKISN 275
Query: 276 CQLEFDCLYSDIISRHPEGEFSKMAPFRILSFDIECAGRKGH-FPEPTHDPVIQVANLVT 334
C E D Y + E E+ ++ RILSFDIEC G FPE +DP+IQ+++++
Sbjct: 276 CTFEIDISYEHVEPITLENEYQQIPKLRILSFDIECIKLDGKGFPEAKNDPIIQISSILY 335
Query: 335 LQGEK-QPFIRNVMTLKSCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKF 393
QGE + + TL CA I G +V+ F E+ +L AW +FI +DPD + GYNI F
Sbjct: 336 FQGEPIDNCTKFIFTLLECASIPGSNVIWFNDEKTLLEAWNEFIIRIDPDFLTGYNIINF 395
Query: 394 DLPYLIEK 401
DLPY++ +
Sbjct: 396 DLPYILNR 403
>sp|P15436|DPOD_YEAST DNA polymerase delta catalytic subunit OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=POL3 PE=1 SV=4
Length = 1097
Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/617 (55%), Positives = 449/617 (72%), Gaps = 13/617 (2%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+KEDVH+SIISDLQNG++ETRRRLAVYCLKDAYLP RL++KLM + NY EMARVTGVP S
Sbjct: 490 QKEDVHYSIISDLQNGDSETRRRLAVYCLKDAYLPLRLMEKLMALVNYTEMARVTGVPFS 549
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLD 519
+LL+RGQ IKV+SQL RK + + VIPN++ S+ YEGATV+E G+Y+ PIATLD
Sbjct: 550 YLLARGQQIKVVSQLFRKCLEIDTVIPNMQSQASDD-QYEGATVIEPIRGYYDVPIATLD 608
Query: 520 FASLYPSIMMAYNLCYSTLVTPEDARKLNLP-PECVNKTPSGETFVKSNLQKGILPEILE 578
F SLYPSIMMA+NLCY+TL +LNL E TP+G+ FV + ++GILP IL+
Sbjct: 609 FNSLYPSIMMAHNLCYTTLCNKATVERLNLKIDEDYVITPNGDYFVTTKRRRGILPIILD 668
Query: 579 ELLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVT 638
EL++ARKRAK DL++ KDP ++ VL+GRQLALKISANSVYGFTGATVG+LPC+ ISSSVT
Sbjct: 669 ELISARKRAKKDLRDEKDPFKRDVLNGRQLALKISANSVYGFTGATVGKLPCLAISSSVT 728
Query: 639 SYGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADY 698
+YGR MI TK V++K+ GY+H+A V+YGDTDSVMV+FG ++ AM LG EAA Y
Sbjct: 729 AYGRTMILKTKTAVQEKYCIKNGYKHDAVVVYGDTDSVMVKFGTTDLKEAMDLGTEAAKY 788
Query: 699 ISGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKN 758
+S F PI LEFEK Y+PYLLI+KKRYAGL+WTNP+KFDK+D KG+ +VRRD+C LV
Sbjct: 789 VSTLFKHPINLEFEKAYFPYLLINKKRYAGLFWTNPDKFDKLDQKGLASVRRDSCSLVSI 848
Query: 759 LVTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVE 818
++ + L KIL++R++ GA+ +V+ TI+D+L NR+D+S L+I+K L +Y H
Sbjct: 849 VMNKVLKKILIERNVDGALAFVRETINDILHNRVDISKLIISKTL---APNYTNPQPHAV 905
Query: 819 LAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQI 878
LAERM++R+ PNVGDRV YVII K Y R+EDP++VLENNI +D+ YYL NQ+
Sbjct: 906 LAERMKRREGV-GPNVGDRVDYVII--GGNDKLYNRAEDPLFVLENNIQVDSRYYLTNQL 962
Query: 879 SKPLLRIFEPILKNASKELLSGDHTRSISISTPSN-SGIMKFAKRQLSCIGCKALI--SN 935
P++ I PI+ K+ +SI I+T S G+M F K+ +C CK +
Sbjct: 963 QNPIISIVAPII--GDKQANGMFVVKSIKINTGSQKGGLMSFIKKVEACKSCKGPLRKGE 1020
Query: 936 GTLCSHCKGREAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRR 995
G LCS+C R ELY K + V++LE + RLWTQCQ C G+LH +VLC++++C IFY R
Sbjct: 1021 GPLCSNCLARSGELYIKALYDVRDLEEKYSRLWTQCQRCAGNLHSEVLCSNKNCDIFYMR 1080
Query: 996 KKAQKDMAEAKLQLDRW 1012
K +K++ E QL +W
Sbjct: 1081 VKVKKELQEKVEQLSKW 1097
Score = 264 bits (674), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 141/364 (38%), Positives = 203/364 (55%), Gaps = 20/364 (5%)
Query: 46 DETLLPEDEESLILRDIEQ-RQDFASR----LAKWARPPLSSGYVSQCQSIMFQQLDIDY 100
D L+ ES +++ Q D A + L+ + R L + + I FQQ+D +
Sbjct: 63 DTDLMGTQLESTFEQELSQMEHDMADQEEHDLSSFERKKLPTDFDPSLYDISFQQIDAEQ 122
Query: 101 VIGDSNRELLPLSSGSAAIIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHFH 160
+ + ++ ++ ++R FGVT EGHSV C V GF+ Y Y+ P +D +
Sbjct: 123 SVLNGIKD-----ENTSTVVRFFGVTSEGHSVLCNVTGFKNYLYVPAPNSSDANDQEQIN 177
Query: 161 QILEGRMREANRNSKVPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGIL 220
+ + N + IE+V K+SI Y PF KI V P MV R
Sbjct: 178 KFVH------YLNETFDHAIDSIEVVSKQSIWGYSGDTKLPFWKIYVTYPHMVNKLRTAF 231
Query: 221 DRG-IQLDGLGMKSFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYR--KTAKTLSYCQ 277
+RG + + TY+ N+ + LR M+DC IVG +WI +P GKY + +S CQ
Sbjct: 232 ERGHLSFNSWFSNGTTTYD-NIAYTLRLMVDCGIVGMSWITLPKGKYSMIEPNNRVSSCQ 290
Query: 278 LEFDCLYSDIISRHPEGEFSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQVANLVTLQG 337
LE Y ++I+ EG++S AP RI+SFDIECAGR G FPEP +DPVIQ+AN+V++ G
Sbjct: 291 LEVSINYRNLIAHPAEGDWSHTAPLRIMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAG 350
Query: 338 EKQPFIRNVMTLKSCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPY 397
K+PFIRNV TL +C+PI G + S TE ++L WR+FI +VDPDV+IGYN FD+PY
Sbjct: 351 AKKPFIRNVFTLNTCSPITGSMIFSHATEEEMLSNWRNFIIKVDPDVIIGYNTTNFDIPY 410
Query: 398 LIEK 401
L+ +
Sbjct: 411 LLNR 414
>sp|P30321|DPOL_PBCV1 DNA polymerase OS=Paramecium bursaria Chlorella virus 1 GN=DPO PE=3
SV=2
Length = 913
Score = 319 bits (817), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 196/517 (37%), Positives = 296/517 (57%), Gaps = 30/517 (5%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+K D+ I + GNAE R +A Y KD LP +LL K+ + + EMA VP+
Sbjct: 367 QKNDLPAMQIFEKFEGNAEDRAIIAAYAAKDTDLPLKLLKKMAILEDLTEMANAVKVPVD 426
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLD 519
++ RGQ I+ S L+ KA+Q N IP+ K A + +G YEGATVL+A+ G Y PIA LD
Sbjct: 427 YINFRGQQIRAFSCLVGKARQMNYAIPDDK-AWATEGKYEGATVLDAKKGAYFTPIAALD 485
Query: 520 FASLYPSIMMAYNLCYSTLVTPEDARKLNLP-------PECVNKTPSGETFVKSNLQKGI 572
FASLYPSI+ A+N+ TLV + R N+P + K + ++ +G+
Sbjct: 486 FASLYPSIIRAHNMSPETLVM--EKRFENVPGVEYYEIETGLGKFKYAQKNDETGEGQGV 543
Query: 573 LPEILEELLAARKRAKADLKEAK---DPLEKAVLDGRQLALKISANSVYGFTGATVGQLP 629
+P +L++L RK AK + EAK D ++A+ D +Q + K+ NSVYGF GA+ G +P
Sbjct: 544 VPALLDDLAKFRKLAKKHMAEAKRNGDDFKEALYDAQQRSFKVVMNSVYGFLGASKGFIP 603
Query: 630 CIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPT----- 684
C+ I++SVT+ GR+MIEHT K + +EVIYGDTDSVMV+ +P
Sbjct: 604 CVPIAASVTATGRKMIEHTAKRAVELLP-------GSEVIYGDTDSVMVKMKLPDDKVHD 656
Query: 685 VEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDKMDTKG 744
++ K+ + A I+ F P LEFEK+YYPY+L SKKRYA + + P++ K+D KG
Sbjct: 657 MDEQFKMAKWLAGEITKDFRAPNDLEFEKIYYPYILYSKKRYAAVKFEEPDEKGKVDVKG 716
Query: 745 IETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLT 804
+ VRRD + ++++ E L IL +D P AV I +L N + +++K L
Sbjct: 717 LALVRRDFSPITRDILKESLDTILYKKDTPTAVSETLERIRKVLDNEYPMEKFMMSK-LL 775
Query: 805 KTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGA--KAYERSEDPIYVL 862
KTG E + H+ +A ++ +R P+ G RVP+V I+ K K ++EDP +
Sbjct: 776 KTGYKNECQ-PHLHVANKIYERTGFPVPS-GARVPFVYIEDKKNPDIKQSFKAEDPTFAQ 833
Query: 863 ENNIPIDTHYYLENQISKPLLRIFEPILKNASKELLS 899
+N + +D +Y+E+Q+ KP+ +FEP+L + KE+
Sbjct: 834 DNGLIVDRLFYIEHQLLKPICSLFEPLLDDPEKEIFG 870
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 126/294 (42%), Gaps = 30/294 (10%)
Query: 108 ELLPLSSGSAAIIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRM 167
+++P S I IFG T EG +VC + F PYF + P+ P + F I E M
Sbjct: 15 DVVPDKGESFFRINIFGKTAEGKTVCVQTK-FTPYFLLEVPESWSPARTNLF--ITETAM 71
Query: 168 REANRNSKVPQFVRHIEMVQKRSIMY-YQQQKSQPFLKIVVALPTMVASCRGILDRGIQL 226
+ VR + + KR M+ + K + ++ V + + L Q+
Sbjct: 72 KY--------DAVRPMCLSTKRKNMWGFDGGKMRNMVQFVFKTQAQLRKAKYRLKDQYQI 123
Query: 227 DGLGMKSFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAKTLSYCQLEFDCLYSD 286
YES+V +R NI +WI V K +S +E + +
Sbjct: 124 ----------YESSVDPIIRVFHLRNINPADWIRV--SKAYPAQTRISNSDIEVETSFQH 171
Query: 287 IISRHPEGEFSKMAPFRILSFDIECAGRKGHFP--EPTHDPVIQVANLVTLQGEKQPFIR 344
+ E + P I S+DIE + FP E D IQ+A GE +P+ R
Sbjct: 172 L----GPVEDKTVPPLVIASWDIETYSKDRKFPLAENPTDYCIQIATTFQKYGEPEPYRR 227
Query: 345 NVMTLKSCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYL 398
V+ K AP+ GV+++S E DV+ W +++ DV IGYN ++DL Y+
Sbjct: 228 VVVCYKQTAPVEGVEIISCLEESDVMNTWMKILQDEKTDVSIGYNTWQYDLRYV 281
>sp|P30320|DPOL_PBCVN DNA polymerase OS=Paramecium bursaria Chlorella virus NY2A GN=DPO
PE=3 SV=1
Length = 913
Score = 313 bits (803), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 195/516 (37%), Positives = 292/516 (56%), Gaps = 30/516 (5%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+K D+ I + G A+ R +A Y KD LP +LL K+ + + EMA VP+
Sbjct: 367 QKNDLPAMQIFEKFEGGADDRAIIAAYARKDTDLPLKLLKKMAILEDITEMANAVKVPVD 426
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLD 519
++ RGQ ++ S L+ KA+Q N IP+ K + G YEGATVL+A+ G Y IA LD
Sbjct: 427 YINFRGQQVRAFSCLVGKARQMNYAIPDDKM-WTVDGKYEGATVLDAKKGAYFTSIAALD 485
Query: 520 FASLYPSIMMAYNLCYSTLVTPEDARKLNLPPECVNKTPSGETFVK-------SNLQKGI 572
FASLYPSI+ A+N+ TLV D R NLP + +G K + +G+
Sbjct: 486 FASLYPSIIRAHNMSPETLVM--DKRFENLPGIEYYEIETGLGTFKYPQKNDETGEGQGV 543
Query: 573 LPEILEELLAARKRAKADLKEAK---DPLEKAVLDGRQLALKISANSVYGFTGATVGQLP 629
+P +L++L RK+AK + EAK D +A+ D +Q + KI NSVYGF GA+ G +P
Sbjct: 544 VPALLDDLAKFRKQAKKHMAEAKKNDDEFREALYDAQQRSYKIVMNSVYGFLGASRGFIP 603
Query: 630 CIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPT----- 684
C+ I++SVT+ GR+MIEHT K V + +EVIYGDTDSVM++ +P
Sbjct: 604 CVPIAASVTATGRKMIEHTAKRVTELLP-------GSEVIYGDTDSVMIRMKLPDDKIHD 656
Query: 685 VEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDKMDTKG 744
++ K+ + A I+ F P LEFEK+YYPY+L SKKRYA + + +P++ K+D KG
Sbjct: 657 MDEQFKMAKWLAGEITKDFKAPNDLEFEKIYYPYILYSKKRYAAIKFEDPDEKGKVDVKG 716
Query: 745 IETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLT 804
+ VRRD + + ++ E L IL +D P AV I +L N + ++K L
Sbjct: 717 LALVRRDFSPITREILKESLDTILFKKDTPTAVTETVECIRKVLDNEYPMEKFTMSKTL- 775
Query: 805 KTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKG--AKAYERSEDPIYVL 862
KTG E + H+ ++ ++ +R P+ G RVP+V I+ K K R+EDP +
Sbjct: 776 KTGYKNECQ-PHLHVSNKIFERTGFPVPS-GARVPFVYIEDKKNLDTKQSFRAEDPTFAQ 833
Query: 863 ENNIPIDTHYYLENQISKPLLRIFEPILKNASKELL 898
EN++ +D +Y+E+Q+ KP+ +FEP+L + E+
Sbjct: 834 ENDLIVDRLFYIEHQLMKPICSLFEPLLDDPETEIF 869
Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 126/282 (44%), Gaps = 30/282 (10%)
Query: 120 IRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMR-EANRNSKVPQ 178
I IFG T +G +VC + F P+F + P+ + F I E M+ +A R S +P
Sbjct: 27 INIFGKTMDGKTVCVRAK-FTPFFLLETPESWSAARTNLF--ITETAMKYDAIRPSCLP- 82
Query: 179 FVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFMTYE 238
+++++ Y K +P ++ V + + + L Q+ YE
Sbjct: 83 -------TKRKNMWGYDGGKMRPMVQFVFKTLSQMRKAKYRLKNEYQI----------YE 125
Query: 239 SNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAKTLSYCQLEFDCLYSDIISRHPEGEFSK 298
S+V +R NI +W+ V K +S +E + + + + +
Sbjct: 126 SSVDPIIRIFHLRNINPADWMHV--SKAFPVETRISNSDIEVETSFQHL----GPSDLKE 179
Query: 299 MAPFRILSFDIECAGRKGHFP--EPTHDPVIQVANLVTLQGEKQPFIRNVMTLKSCAPIV 356
+ P I S+DIE + FP E D IQ+A GE +P+ R V+ K A +
Sbjct: 180 VPPLIIASWDIETYSKDRKFPLAENPADYCIQIATTFQKYGEPEPYRRVVVCYKQTASVE 239
Query: 357 GVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYL 398
GV+++S E DV+ W +++ DV IGYN+ ++DL Y+
Sbjct: 240 GVEIISCAEEADVMNTWMTILQDEITDVSIGYNLWQYDLRYI 281
>sp|O60673|DPOLZ_HUMAN DNA polymerase zeta catalytic subunit OS=Homo sapiens GN=REV3L PE=1
SV=2
Length = 3130
Score = 292 bits (748), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 204/600 (34%), Positives = 308/600 (51%), Gaps = 38/600 (6%)
Query: 436 RLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNL--VIPNVKQAGS 493
++L++L I EMAR+ G+ +L+RG +V S +LR AK N V P+V+Q
Sbjct: 2529 QMLEQLDLIGKTSEMARLFGIQFLHVLTRGSQYRVESMMLRIAKPMNYIPVTPSVQQRSQ 2588
Query: 494 EQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYST-LVTPEDARK------ 546
+ ++E + FY + LDF SLYPSI++AYN C+ST L E+ K
Sbjct: 2589 MRAPQCVPLIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFSTCLGHVENLGKYDEFKF 2648
Query: 547 ----LNLPPEC-------VNKTPSGETFVKSNLQKGILPEILEELLAARKRAKADLKEAK 595
L +PP+ + +P+G FVK +++KG+LP +LEE+L R K +K K
Sbjct: 2649 GCTSLRVPPDLLYQVRHDITVSPNGVAFVKPSVRKGVLPRMLEEILKTRFMVKQSMKAYK 2708
Query: 596 -DPLEKAVLDGRQLALKISANSVYGFTGATV-GQLPCIEISSSVTSYGRQMIEHTKKLVE 653
D +LD RQL LK+ AN +G+T A G++PCIE+ S+ R+ +E KLV
Sbjct: 2709 QDRALSRMLDARQLGLKLIANVTFGYTSANFSGRMPCIEVGDSIVHKARETLERAIKLVN 2768
Query: 654 DKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEK 713
D T G A V+YGDTDS+ V T E + K+G+E A+ ++ T KP+KL+FEK
Sbjct: 2769 D--TKKWG----ARVVYGDTDSMFVLLKGATKEQSFKIGQEIAEAVTATNPKPVKLKFEK 2822
Query: 714 VYYPYLLISKKRYAG-LYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRD 772
VY P +L +KKRY G +Y T +K D KGIETVRRD+C V ++ L + RD
Sbjct: 2823 VYLPCVLQTKKRYVGYMYETLDQKDPVFDAKGIETVRRDSCPAVSKILERSLKLLFETRD 2882
Query: 773 IPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAA--HVELAERMRKRDAAT 830
I QYV+ LL + + + K + Y+ A +EL +M D +
Sbjct: 2883 ISLIKQYVQRQCMKLLEGKASIQDFIFAKEY-RGSFSYKPGACVPALELTRKMLTYDRRS 2941
Query: 831 APNVGDRVPYVIIKAAKGAKAYERSEDPIYVLEN-NIPIDTHYYLENQISKPLLRIFEPI 889
P VG+RVPYVII G + P+ VL++ + ++ YY+ QI PL RIF I
Sbjct: 2942 EPQVGERVPYVIIYGTPGVPLIQLVRRPVEVLQDPTLRLNATYYITKQILPPLARIFSLI 3001
Query: 890 ---LKNASKELLSGDHTRSISISTPSN-SGIMKFAKRQLSCIGCKALISNGTLCSHCKGR 945
+ + EL S S S P G + L C C L +G +CS C+ +
Sbjct: 3002 GIDVFSWYHELPRIHKATSSSRSEPEGRKGTISQYFTTLHCPVCDDLTQHG-ICSKCRSQ 3060
Query: 946 EAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEA 1005
+ +++ELE +L C+ C G + + C S +CP+ ++ + +++++A
Sbjct: 3061 PQHVAVILNQEIRELERQQEQLVKICKNCTGCFDRHIPCVSLNCPVLFKLSRVNRELSKA 3120
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 67/153 (43%), Gaps = 10/153 (6%)
Query: 123 FGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREAN----RNSKVPQ 178
FG T G C +HG PY Y+ G G S+ Q+ R N S Q
Sbjct: 41 FGATPAGQKTCLHLHGIFPYLYVPY-DGYGQQPESYLSQMAFSIDRALNVALGNPSSTAQ 99
Query: 179 FVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFMTYE 238
V + +V Y +K + F+KI + PTMV +L G ++ K + +E
Sbjct: 100 HVFKVSLVSGMPFYGY-HEKERHFMKIYLYNPTMVKRICELLQSGAIMN----KFYQPHE 154
Query: 239 SNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAK 271
+++ + L+ ID N+ G N I + K+RK +
Sbjct: 155 AHIPYLLQLFIDYNLYGMNLINLAAVKFRKARR 187
Score = 33.5 bits (75), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 21/119 (17%)
Query: 304 ILSFDIECAGRKGHFPEPTHDPV------------------IQVANLVTLQGEKQPF--- 342
++S ++ R+ P+P DP+ ++ ++ + +K F
Sbjct: 2299 LISVELHARTRRDLEPDPEFDPICALFYCISSDTPLPDTEKTELTGVIVIDKDKTVFSQD 2358
Query: 343 IRNVMTLKSCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
IR L + I G++V E+ + + I+ DPD+++GY I YL+++
Sbjct: 2359 IRYQTPLLIRSGITGLEVTYAADEKALFHEIANIIKRYDPDILLGYEIQMHSWGYLLQR 2417
>sp|Q61493|DPOLZ_MOUSE DNA polymerase zeta catalytic subunit OS=Mus musculus GN=Rev3l PE=1
SV=3
Length = 3122
Score = 285 bits (728), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 201/600 (33%), Positives = 307/600 (51%), Gaps = 38/600 (6%)
Query: 436 RLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNL--VIPNVKQAGS 493
++L++L I EMAR+ G+ +L+RG +V S +LR AK N V P+++Q
Sbjct: 2521 QMLEQLDLIGKTSEMARLFGIQFLHVLTRGSQYRVESMMLRIAKPMNYIPVTPSIQQRSQ 2580
Query: 494 EQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYST-LVTPEDARK------ 546
+ ++E + FY + LDF SLYPSI++AYN C+ST L E+ K
Sbjct: 2581 MRAPQCVPLIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFSTCLGHVENLGKYDEFKF 2640
Query: 547 ----LNLPPEC-------VNKTPSGETFVKSNLQKGILPEILEELLAARKRAKADLKEAK 595
L +PP+ V +P+G FVK +++KG+LP +LEE+L R K +K K
Sbjct: 2641 GCTSLRVPPDLLYQIRHDVTVSPNGVAFVKPSVRKGVLPRMLEEILKTRLMVKQSMKSYK 2700
Query: 596 -DPLEKAVLDGRQLALKISANSVYGFTGATV-GQLPCIEISSSVTSYGRQMIEHTKKLVE 653
D +L+ RQL LK+ AN +G+T A G++PCIE+ S+ R+ +E KLV
Sbjct: 2701 QDRALSRMLNARQLGLKLIANVTFGYTAANFSGRMPCIEVGDSIVHKARETLERAIKLVN 2760
Query: 654 DKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEK 713
D T G A V+YGDTDS+ V T E + K+G+E A+ ++ T +P+KL+FEK
Sbjct: 2761 D--TKKWG----ARVVYGDTDSMFVLLKGATKEQSFKIGQEIAEAVTATNPRPVKLKFEK 2814
Query: 714 VYYPYLLISKKRYAG-LYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRD 772
VY P +L +KKRY G +Y T +K D KGIETVRRD+C V ++ L + RD
Sbjct: 2815 VYLPCVLQTKKRYVGYMYETLDQKEPVFDAKGIETVRRDSCPAVSKILERSLKLLFETRD 2874
Query: 773 IPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAA--HVELAERMRKRDAAT 830
I QYV+ L+ + + + K + Y A +EL +M D +
Sbjct: 2875 ISLIKQYVQRQCMKLVEGKASIQDFIFAKEY-RGSFSYRPGACVPALELTRKMLAYDRRS 2933
Query: 831 APNVGDRVPYVIIKAAKGAKAYERSEDPIYVLEN-NIPIDTHYYLENQISKPLLRIFEPI 889
P VG+RVPYVII G + P VL++ + ++ YY+ QI PL RIF I
Sbjct: 2934 EPRVGERVPYVIIYGTPGLPLIQLIRRPAEVLQDPTLRLNATYYITKQILPPLARIFSLI 2993
Query: 890 ---LKNASKELLSGDHTRSISIST-PSNSGIMKFAKRQLSCIGCKALISNGTLCSHCKGR 945
+ + +EL S S S G + L C C L +G +CS C+ +
Sbjct: 2994 GIDVFSWYQELPRIQKATSSSRSELEGRKGTISQYFTTLHCPVCDDLTQHG-ICSKCRSQ 3052
Query: 946 EAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEA 1005
+ +++ELE +L C+ C GS + + C S +CP+ ++ + +++++A
Sbjct: 3053 PQHVAIILNQEIRELERKQEQLIKICRNCTGSFDRHIPCVSLNCPVLFKLSRVNRELSKA 3112
Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 66/153 (43%), Gaps = 10/153 (6%)
Query: 123 FGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREAN----RNSKVPQ 178
FG T G C +HG PY Y+ G G S+ Q+ R N S Q
Sbjct: 41 FGATPAGQKTCLHLHGIFPYLYVPY-DGYGQQPESYLSQMAFSIDRALNVALGNPSSTAQ 99
Query: 179 FVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFMTYE 238
V + +V Y +K + F+KI + P MV +L G ++ K + +E
Sbjct: 100 HVFKVSLVSGMPFYGY-HEKERHFMKIYLYNPAMVKRICELLQSGAIMN----KCYQPHE 154
Query: 239 SNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAK 271
+++ + L+ ID N+ G N I + K+RK +
Sbjct: 155 AHIPYLLQLFIDYNLYGMNLINLAAVKFRKARR 187
>sp|P52342|DPOL_HHV7J DNA polymerase OS=Human herpesvirus 7 (strain JI) GN=U38 PE=3 SV=1
Length = 1012
Score = 279 bits (713), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 187/542 (34%), Positives = 284/542 (52%), Gaps = 61/542 (11%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
EKE++ + I ++ R + YC++D+ L +L K+ + + E+A + + I
Sbjct: 449 EKENLSYKEIPKKFIDGSKGRAVVGRYCIQDSLLVVQLFTKINYHYEMAEVASLAYITIR 508
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVK---QAGSEQGTYEGATVLEARAGFYEKPIA 516
+ GQ K+ +L +AK N+++P++ G E Y+GATVLE + G+Y P
Sbjct: 509 CAVFEGQQKKIFPCILHEAKNLNMILPSMNTNFNKGKENVGYKGATVLEPKIGYYATPTV 568
Query: 517 TLDFASLYPSIMMAYNLCYSTLVTPEDARKLNLPPE---CVNKTPSGETFVKSNLQKGIL 573
DF SLYPSIMMA+NLCYSTLV E+A + L + V+ P FVK +++ IL
Sbjct: 569 VFDFQSLYPSIMMAHNLCYSTLVVDENAV-IGLHADDILTVHVGPVTHRFVKKTVRESIL 627
Query: 574 PEILEELLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEI 633
+L++ L RK K +K +P+ + +LD +QLALK + NSVYG TGAT LPC+ I
Sbjct: 628 ASLLKKWLDKRKEVKMQMKMCNNPVMEMLLDKKQLALKTTCNSVYGVTGATHSLLPCVAI 687
Query: 634 SSSVTSYGRQMIEHTKKLVE----------DKF-TTVGGYE--HNAEVIYGDTDSVMVQF 680
++SVT GR+M+ T V+ +KF T G + EVIYGDTDS+ V F
Sbjct: 688 AASVTCLGREMLCKTVDYVDSAMYSDTFFIEKFGLTRGDFSGTFGIEVIYGDTDSLFVTF 747
Query: 681 GVPTVEAAMKLGREAADYISGTFIK-PIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFD- 738
+A ++ A +I+ T K PIKLEFEK+ +P +LI KKRY G K D
Sbjct: 748 KNVCPKALKRIAPSIASHITNTLFKHPIKLEFEKILFPLILICKKRYIG-------KLDD 800
Query: 739 -KMDTKGIETVRRDNCLLVKNLVTECLHKILVDRD--------------------IPGAV 777
+ KG+E VR+ +C VK +V + + + D D +P +
Sbjct: 801 ATLVFKGVELVRKTSCDFVKVVVKDIIDLLFWDVDVQKSAEKLSNMTIQEIYENGVPDGI 860
Query: 778 QYVKSTISD----LLMNRMDLSLLVITKGLTKTGDDY-EVKAAHVELAERMRKRDAATAP 832
Q + + D L +NR+++ LV++ L+K Y + H+ + +R+ +R P
Sbjct: 861 QKIIKKLCDARDALFLNRVNIKSLVLSSVLSKDISAYKQANLPHLAVVKRLAQRKEE-LP 919
Query: 833 NVGDRVPYVIIKAAKGAKA----YERSEDPIYVLENNIPIDTHYYLENQISKPLLRIFEP 888
N+GDRV Y++I + K YE +EDP Y +ENN+ I+ Y E QI K + P
Sbjct: 920 NIGDRVMYILIAPTETVKKTFHNYELAEDPAYAIENNLKINADKYFE-QIMKAVTNAISP 978
Query: 889 IL 890
I
Sbjct: 979 IF 980
Score = 90.1 bits (222), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 82/329 (24%), Positives = 140/329 (42%), Gaps = 36/329 (10%)
Query: 74 KWARPPLSSGYVSQCQSIMFQQLDIDYVIGDSNRELLPLSSGSAAIIRIFGVTREGHSVC 133
K R PL +S++F I+ + ++P S +I++FG T G VC
Sbjct: 75 KELRAPLKFHIYDASESLLFTD-SIENIPFQYRHFVIP----SGNVIKLFGKTECGKKVC 129
Query: 134 CKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANRNSKVPQFVRH-IEMVQKRSIM 192
V G YFY C + L R+ +S++ IE V K +
Sbjct: 130 INVFGQNSYFY--CEYQCKKE--------LNSRICSLLNSSEIKMSCSFSIESVTKYNFY 179
Query: 193 YYQQQKSQPFLKIVVALPTMVASCRG---ILDRGIQLDGLGMKSFMTYESNVLFALRFMI 249
Y + + K+ + S R +L+ G+ + YE+ V RF I
Sbjct: 180 GYNTEPIKNLFKL--SFSNFYISNRIGKILLNEGVSV----------YEAEVEILNRFFI 227
Query: 250 DCNIVGGNWIEVPVGKYRKTAKTLSYCQLEFDCLYSDIISRHPEGEFSKMAPFRILSFDI 309
D N+ W ++ ++ AK+ S ++E +C SD+ + + SFDI
Sbjct: 228 DNNLKSFGWYQINYLSIQEFAKS-SNVEIELNCHVSDLFLLKEDS----WPLYDCCSFDI 282
Query: 310 ECAGRKGHFPEPTHDPVIQVANLVTLQGEKQPFIRNVMTLKSCAPIVGVDVMSFETERDV 369
EC + G+FP+ + +++ E +++ TL +C I GV + F +E ++
Sbjct: 283 ECLSQNGNFPDAEQMVTSSLISVIDFDSEGNYQSKHLFTLGTCEQIEGVFIYEFASEFEL 342
Query: 370 LLAWRDFIREVDPDVMIGYNICKFDLPYL 398
L A+ F++ P+++ GYNI FDL YL
Sbjct: 343 LYAFFLFLKCKSPEILTGYNIINFDLKYL 371
>sp|Q69025|DPOL_GPCMV DNA polymerase OS=Guinea pig cytomegalovirus (strain 22122) PE=3 SV=2
Length = 1117
Score = 276 bits (705), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 194/584 (33%), Positives = 297/584 (50%), Gaps = 105/584 (17%)
Query: 397 YLIE-KEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTG 455
YL E K+D+ + I N R + YC+KDA L +RL +KL + + +AR+
Sbjct: 487 YLNEHKDDLSYKEIPPTFLANDNGRAVVGRYCIKDALLVKRLFEKLNYHYEAASVARLAR 546
Query: 456 VPISFLLSRGQSIKVLSQLLRKAKQKNLVIPN---------------------------- 487
+P+ ++ GQ I++ S +L +A ++N+++P+
Sbjct: 547 IPLRSVIFEGQQIRIYSCILEEAGERNMILPSFLTAKRPGELATESSPVASFEEDSEQTS 606
Query: 488 ------VKQAGSEQGT--YEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLV 539
V GS G Y+GATVLE GFY+ P+A DFASLYPSI+M +NLCYST +
Sbjct: 607 DSSLGEVSSQGSSDGGVGYQGATVLEPDVGFYDTPVAVFDFASLYPSIIMRHNLCYSTYL 666
Query: 540 --------TPEDARKLNLPPECVNKTPSGETFVKSNLQKGILPEILEELLAARKRAKADL 591
+ +D L E + T G FV+ +++K IL E+L LA RK + L
Sbjct: 667 PLGRDDGLSDDDVFLL----EFDDGTRYG--FVREHVRKSILGELLARWLAKRKSVRKVL 720
Query: 592 KEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHT--- 648
E +D +EK +LD QLALK++ N+ YGFTG + G +PC+ I++++T GR M+
Sbjct: 721 AECQDEVEKLILDKYQLALKVTCNAFYGFTGVSSGMMPCLPIAAAITRIGRDMLMSVVDY 780
Query: 649 ------------KKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAA 696
+ L E+ T G N +VIYGDTDSV V G + ++ G A
Sbjct: 781 VNTYMGHAEFWLRYLGEEDLT---GDALNVKVIYGDTDSVFVICGGVKCGSVLEHGEAIA 837
Query: 697 DYIS-GTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLL 755
+I+ F +PIKLEFEKV+ ++I KKRY G + K+ KGIE VR+ C
Sbjct: 838 GHITRALFREPIKLEFEKVFVNLMMICKKRYVGRIYGQ----TKLSMKGIELVRKTACEY 893
Query: 756 VKNLVTECLHKILVDRDI-PGAVQYVKSTISD-----------------------LLMNR 791
VK+ V L+ I + D+ GAV+ + T+ D L +NR
Sbjct: 894 VKSTVRNVLNMIFFEDDVSAGAVELSRMTMDDVKRHGVPSGFYRIVEALSNARDELYLNR 953
Query: 792 MDLSLLVITKGLTKTGDDYEVKA-AHVELAERMRKRDAATAPNVGDRVPYVIIK----AA 846
+D+ LV++ L++ Y+ + H+ + +R+ R P+VGDRVPYV+I ++
Sbjct: 954 VDVKKLVLSASLSQEVSAYKQQNLPHLRVIQRLAARREEL-PSVGDRVPYVLIAPPPGSS 1012
Query: 847 KGAKAYERSEDPIYVLENNIPIDTHYYLENQISKPLLRIFEPIL 890
K YE SEDP YV+E+ +P++ Y E+ + K + + PI+
Sbjct: 1013 KNVPNYEISEDPGYVIEHKLPVNGEKYFEH-VVKTVTNVLGPII 1055
Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 87/325 (26%), Positives = 147/325 (45%), Gaps = 45/325 (13%)
Query: 107 RELLPLSSGSAAIIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGR 166
R ++P + +IR+FG T +G SVC V G YFY G + L
Sbjct: 128 RHVVPCGN----VIRMFGRTCDGSSVCVNVFGQPSYFYCEYDGSEG-----YLDNYLSTV 178
Query: 167 MREANRNSKVPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVA-LPTMVASCRGILDRGIQ 225
++E +K+ F + V K S+ Y + + ++ + P + + RG++
Sbjct: 179 LKETEDVTKI-VFTLDAQRVHKYSLFGYNTKYIENLYRVTLNNWPVCKRLAQNLQSRGLR 237
Query: 226 LDGLGMKSFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAKTLSYCQLEFDCLYS 285
+ YE+ V RF +D I W + Y +++ S+C +E DC
Sbjct: 238 V----------YEAGVDPVARFCVDRKIPSFGWCVIK-RFYARSSGLASFCDIEIDCEIG 286
Query: 286 DIISRHPEGEFSKMA--PFRILSFDIECAGRKGHFPEPT--HDPVIQVANLVTLQGEK-- 339
D+ E + S M+ +R SFDIEC FP+ + D VIQ++ + G
Sbjct: 287 DV-----EADDSDMSWPEYRCASFDIECMSGGDRFPDSSMVDDIVIQISVICYAVGRSGA 341
Query: 340 --------QPFIR---NVMTLKSCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGY 388
+ +R ++ TL CAPI G V F +E ++LL + F + PD++ GY
Sbjct: 342 ESDGVSGAEAAVREHQHLFTLGPCAPIPGTHVYEFPSEYELLLGFFIFFKAYPPDILTGY 401
Query: 389 NICKFDLPYLIEK-EDVHHSIISDL 412
NI FD+ YL+++ E ++H+ +S+
Sbjct: 402 NINLFDIKYLLQRMEKIYHANVSEF 426
>sp|Q9DKT8|DPOL_ELHVK DNA polymerase catalytic subunit OS=Elephantid herpesvirus 1 (isolate
Asian elephant/Berlin/Kiba/1998) PE=3 SV=1
Length = 1041
Score = 275 bits (703), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 179/527 (33%), Positives = 272/527 (51%), Gaps = 56/527 (10%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+K V + I L + + R + YC+ D+ L +L KL+F + +AR++ + I+
Sbjct: 488 KKHSVSYKQIPVLFRRDDDGRAVVGAYCVHDSVLVHKLFCKLLFHYEASAIARLSNISIN 547
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLD 519
++ GQ ++ + +L A+++ L+IP++ +AG + TY+GATVLE + GFY P+A D
Sbjct: 548 KVVFDGQQSRIFTCMLAAARREGLIIPSIDEAGED--TYQGATVLEPKTGFYNTPVAVFD 605
Query: 520 FASLYPSIMMAYNLCYSTLVTPEDARKLNLPPECVNKTPSGET--FVKSNLQKGILPEIL 577
FASLYPSI+ AYNLCY TL+T L + T +G FVK +++K IL ++L
Sbjct: 606 FASLYPSIIQAYNLCYCTLITDNYVASLREEDITMVTTNTGRVHRFVKPHVRKSILSQLL 665
Query: 578 EELLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSV 637
LA RK + LK KDPL + +LD +QLALK++ N+VYGFTG + G PC+ I+ SV
Sbjct: 666 TSWLAERKAVREKLKHCKDPLMQILLDKQQLALKLTCNAVYGFTGVSKGMFPCLAIAESV 725
Query: 638 TSYGRQMIEHTKKLVEDKFTT---------------VGGYEHNAEVIYGDTDSVMVQFGV 682
T+ GRQ++ TK+ + D+F V +V+YGDTDSV V
Sbjct: 726 TAQGRQLLAVTKQYICDRFNDWTFLTQIAPELVDCPVDSNRFKIDVVYGDTDSVFVLLC- 784
Query: 683 PTVEAAMKLGREAADYISGT----FIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFD 738
+E A +L ++++ F PIKLE +KV+ LL+ KKRY G+ +
Sbjct: 785 -GIENADRLYSALPNFVAHITKTLFPPPIKLEVDKVFEKLLLLCKKRYVGVLHGE----E 839
Query: 739 KMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQYVKSTISD------------ 786
K+ KGI+ VRR+ C VKN + + D I AVQ + D
Sbjct: 840 KLSMKGIDLVRRNVCGFVKNTTLAVIKSLFSDNVISEAVQKMSGMTQDQVCKEGLPPGFF 899
Query: 787 ------------LLMNRMDLSLLVITKGLTKTGDDY-EVKAAHVELAERMRKRDAATAPN 833
L NR+D+ L ++ LT+ D Y + H+ + + +R PN
Sbjct: 900 KLVALITDARERLYENRVDIHELQLSATLTQACDKYKQQNLPHLTVVRKKLERREEI-PN 958
Query: 834 VGDRVPYVIIKAAKGAKA-YERSEDPIYVLENNIPIDTHYYLENQIS 879
GDR+ YV++ A Y +EDP YV + + I+ Y N IS
Sbjct: 959 TGDRIFYVLLAHPDERVANYVIAEDPDYVETHRLQINCSKYFSNLIS 1005
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 147/335 (43%), Gaps = 37/335 (11%)
Query: 104 DSNRELLP-----LSSGSAAIIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISH 158
D + E LP S + II + G T +G VC VHG YFY++ D
Sbjct: 133 DVSYEYLPWRYKRFLSPTGTIISLIGKTEDGTDVCVNVHGQAYYFYVAMKDEAATRDA-- 190
Query: 159 FHQILEGRMREANRNSKVPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRG 218
+++ +E++ S V ++ V K S+M + S + I + R
Sbjct: 191 VSKVMSNLEKESSSCSYV------MKSVNKMSLMGFNTNTSSYLMMIFSNHFVGKEAARN 244
Query: 219 ILDRGIQLDGLGMKSFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAKTLSYCQL 278
+ D LD F +E V RF++D W + R+T+K S C+L
Sbjct: 245 LKD----LD------FEIFEHLVEPNTRFLVDNEFCSFGWYSLKTPYVRQTSKD-SNCEL 293
Query: 279 EFDCLYSDIISRHPEGEFSKMAPFRILSFDIEC--AGRKGHFPEPTH--DPVIQVANLVT 334
E DC D+ ++ ++ ++FDIEC FP+ T+ D +IQ++ V
Sbjct: 294 ELDCCVGDLQVLRDRVDWPN---YKCMAFDIECLSGSVDDAFPDATNPDDIIIQIS-CVC 349
Query: 335 LQGEKQPFIRNVMTLKSCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFD 394
+ +++ TL SCA I GV + +E +++ ++ F+R P+ + GYNI FD
Sbjct: 350 FDIKNTIETQHLFTLGSCAEIPGVYIYECASEYELIESFLTFVRVYGPNFITGYNINAFD 409
Query: 395 LPYLIEKEDVHHSIISDLQNGNAETRRRLAVYCLK 429
+PY+I + + ++Q G +R + C K
Sbjct: 410 IPYVIGRCRYY-----NIQCGAFTKMKRGRMTCFK 439
>sp|O71121|DPOL_RHCM6 DNA polymerase OS=Rhesus cytomegalovirus (strain 68-1) GN=UL54 PE=3
SV=1
Length = 1035
Score = 272 bits (695), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 175/543 (32%), Positives = 281/543 (51%), Gaps = 63/543 (11%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+KED+ + I E R ++ YC++DA L + L + + F + +AR+ +P+
Sbjct: 468 QKEDMSYKDIPVKFISGCEGRAQVGKYCVQDAVLVKDLFNTINFHYEAGAIARLARIPMR 527
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQG----TYEGATVLEARAGFYEKPI 515
++ GQ I++ + LL + ++ ++PN K A + +Y+GATV E G+Y P+
Sbjct: 528 RVIFDGQQIRIYTSLLDECACRDFIMPNHKGADNSSEPTDVSYQGATVFEPEVGYYSDPV 587
Query: 516 ATLDFASLYPSIMMAYNLCYSTLVTPEDARKLNLPPECVNKTPSGET-----FVKSNLQK 570
DFASLYPSI+MA+NLCYST V P PPE T E+ FVK+ ++
Sbjct: 588 VVFDFASLYPSIIMAHNLCYSTFVAPGGES----PPESDVLTVELESGLSYRFVKNTVRN 643
Query: 571 GILPEILEELLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPC 630
+L E+L + ++ R+ + ++ DP+++ +LD QLALK++ N+ YGFTG G +PC
Sbjct: 644 SVLSELLTKWVSQRRAVRETMRSCHDPVKRMLLDKEQLALKVTCNAFYGFTGVVNGMMPC 703
Query: 631 IEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYEHN-------------AEVIYGDTDSVM 677
+ I++S+T GR M+ T + VE+ F + HN +VIYGDTDSV
Sbjct: 704 LPIAASITRIGRDMLMRTSQFVEENFAE-PCFLHNFFNREDYSGDPVAVKVIYGDTDSVF 762
Query: 678 VQFGVPTVEAAMKLGREAADYISGT-FIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEK 736
V + T A ++ G A YI+ F+ PIKLEFEKV+ ++I KKRY G E
Sbjct: 763 VCYRGVTAAALIERGPSLAHYITQCLFVDPIKLEFEKVFGSLMMICKKRYIGKIVGETE- 821
Query: 737 FDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIP-GAVQYVKSTISDLLM------ 789
+ KG++ VR+ +C VKN+ + + + D ++ AVQ + T+ +L M
Sbjct: 822 ---LSMKGVDLVRKTSCEFVKNVTRDIIQLLFDDPEVSRAAVQLSRLTLDELKMQGVPPG 878
Query: 790 -----------------NRMDLSLLVITKGLTKTGDDY-EVKAAHVELAERMRKRDAATA 831
+R + LV++ L+K Y + H+ + +R+ R +
Sbjct: 879 FGRVIQRLSQARDELYTSRARVEELVLSSVLSKDVSLYKQSNLPHIAVIKRLAAR-SEEL 937
Query: 832 PNVGDRVPYVIIKA----AKGAKAYERSEDPIYVLENNIPIDTHYYLENQISKPLLRIFE 887
P VGDRV YV+ + G + YE +EDP YV E+ +PI Y + Q+ K + +
Sbjct: 938 PVVGDRVFYVLTAPVDGRSSGVRNYEIAEDPTYVREHGVPIHADKYFD-QVIKSVTNVLS 996
Query: 888 PIL 890
P+
Sbjct: 997 PVF 999
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 129/299 (43%), Gaps = 38/299 (12%)
Query: 116 SAAIIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDI--SHFHQILEGRMREANRN 173
S ++R FG T +GHS+C V G YFY G D+ S + E RM
Sbjct: 121 SGNVLRFFGATEQGHSICVNVFGQRSYFYCEYADGDLLRDLLASVSDLVSEPRM------ 174
Query: 174 SKVPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASC-RGILDRGIQLDGLGMK 232
+ I VQK SI Y ++ ++ +M +L+ GI +
Sbjct: 175 ----AYALTITPVQKMSIYGYGTSPIPNLFRVSISNWSMAKKIGEYLLENGIPV------ 224
Query: 233 SFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAKTLSYCQLEFDCLYSDIISRHP 292
YE V R +ID + W V +Y S C E DC +DI++
Sbjct: 225 ----YEIRVDPLTRLVIDKKMTTFGW--CCVHRYEWRTHKSSTCDFEIDCDVADIMAVSD 278
Query: 293 EGEFSKMAPFRILSFDIECAGRKGHFP--EPTHDPVIQVANLVTLQG-----EKQPFIR- 344
+ + +R LSFDIEC G FP E T D VIQ++ + G E F
Sbjct: 279 D---TSWPVYRCLSFDIECMSASGGFPAAEQTDDIVIQISCVCYNTGGTGCEENTVFGTS 335
Query: 345 --NVMTLKSCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
++ T+ SCAP+ GVDV F +E ++LL + F + P + GYNI FD Y++ +
Sbjct: 336 GLHLFTIGSCAPLAGVDVYEFPSEYEMLLGFLIFFQRYSPCFVTGYNINSFDFKYILTR 394
>sp|Q9QJ32|DPOL_HHV6Z DNA polymerase catalytic subunit OS=Human herpesvirus 6B (strain
Z29) GN=U38 PE=3 SV=1
Length = 1012
Score = 271 bits (694), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 184/538 (34%), Positives = 279/538 (51%), Gaps = 56/538 (10%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
EKE + + I R + YCL+D+ L RL ++ + + E+AR+ V
Sbjct: 452 EKEQLSYKEIPKKFISGPSGRAVVGKYCLQDSVLVVRLFKQINYHYEVAEVARLAHVTAR 511
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGT-YEGATVLEARAGFYEKPIATL 518
++ GQ K+ +L +AK++N+++P++ + + QG Y+GATVLE + G+Y P
Sbjct: 512 CVVFEGQQKKIFPCILTEAKRRNMILPSMVSSHNRQGIGYKGATVLEPKTGYYAVPTVVF 571
Query: 519 DFASLYPSIMMAYNLCYSTLVTPEDARKLNLPPE----CVNKTPSGETFVKSNLQKGILP 574
DF SLYPSIMMA+NLCYSTLV D R++ E V FVK +++ +L
Sbjct: 572 DFQSLYPSIMMAHNLCYSTLVL--DERQIAGLSESDILTVKLGDETHRFVKPCVRESVLG 629
Query: 575 EILEELLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEIS 634
+L++ LA R+ KA+++ DP+ K +LD +QLALK + NSVYG TGA G LPC+ I+
Sbjct: 630 SLLKDWLAKRREVKAEMQNCSDPMMKLLLDKKQLALKTTCNSVYGVTGAAHGLLPCVAIA 689
Query: 635 SSVTSYGRQMIEHTKKLVEDKFTTVGGY-------------EHNAEVIYGDTDSVMVQFG 681
+SVT GR+M+ T V K + + + EVIYGDTDS+ +
Sbjct: 690 ASVTCLGREMLCSTVDYVNSKMQSEQFFCEELGLTASDFTGDLKVEVIYGDTDSIFMSVR 749
Query: 682 VPTVEAAMKLGREAADYISGTFIK-PIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDKM 740
E+ ++ A +I+ K PIKLEFEK+ P +LI KKRY G + F
Sbjct: 750 NMANESLRRIAPMIAKHITDRLFKSPIKLEFEKILCPLILICKKRYIGRQDDSLLIF--- 806
Query: 741 DTKGIETVRRDNCLLVKNLVTECLHKILVDRDI-PGAVQYVKSTIS-------------- 785
KG++ VR+ +C VK +V + + + D ++ AV++ T +
Sbjct: 807 --KGVDLVRKTSCDFVKGVVKDIVDLLFFDEEVQTAAVEFSHMTQTQLREQGVPVGIHKI 864
Query: 786 ---------DLLMNRMDLSLLVITKGLTKTGDDY-EVKAAHVELAERMRKRDAATAPNVG 835
+L NR D+ L+++ L+K Y + AH+ + R+ +R PNVG
Sbjct: 865 LRRLCKAREELFQNRADVRHLMLSSVLSKEVAAYKQPNLAHLSVIRRLAQRKEEI-PNVG 923
Query: 836 DRVPYVIIKAAKGAKA---YERSEDPIYVLENNIPIDTHYYLENQISKPLLRIFEPIL 890
DR+ YV+I + G K YE +EDP YVLE+ IPI Y + QI K + PI
Sbjct: 924 DRIMYVLIAPSTGNKQTHNYELAEDPNYVLEHKIPIHAEKYFD-QIIKAVTNAISPIF 980
Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 93/306 (30%), Positives = 144/306 (47%), Gaps = 30/306 (9%)
Query: 116 SAAIIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANRNSK 175
S +IR+FG + +G +C V G E YFY C G + + +L G ++ +
Sbjct: 113 SGTVIRMFGRSEDGEKICVNVFGQEQYFYCECVDGKSLKATIN-NLMLTGEVKMS----- 166
Query: 176 VPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFM 235
FV IE K S+ Y K V+ S R + + +Q +G F+
Sbjct: 167 -CSFV--IEPADKLSLYGYNANTVVNLFK--VSFGNFYVSQR--IGKILQNEG-----FV 214
Query: 236 TYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAKTLSYCQLEFDCLYSDIISRHPEGE 295
YE +V RF +D + W V + K S ++E +C SD++S E
Sbjct: 215 VYEIDVDVLTRFFVDNGFLSFGWYNVKKYIPQDMGKG-SNLEVEINCHVSDLVSL----E 269
Query: 296 FSKMAPFRILSFDIECAGRKGHFPEPTH--DPVIQVANLVTLQGEKQPFIRNVMTLKSCA 353
+ SFDIEC G+ G+FP+ + D VIQ++ +V+ E R++ TL +C
Sbjct: 270 NVNWPLYGCWSFDIECLGQNGNFPDAENLGDIVIQIS-VVSFDTEGDRDERHLFTLGTCE 328
Query: 354 PIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYL-IEKEDVHHSII--- 409
I GV + F +E ++LL + F+R P+ + GYNI FDL YL I + ++H I
Sbjct: 329 QIDGVHIYEFASEFELLLGFFIFLRIESPEFITGYNINNFDLKYLCIRMDKIYHYEIGCF 388
Query: 410 SDLQNG 415
S L+NG
Sbjct: 389 SKLKNG 394
>sp|Q9P6L6|DPOZ_SCHPO DNA polymerase zeta catalytic subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rev3 PE=3 SV=1
Length = 1480
Score = 271 bits (694), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 197/678 (29%), Positives = 315/678 (46%), Gaps = 63/678 (9%)
Query: 367 RDVLLAWRDFIREVDPDVMIGY-------NICKFDLPYLIEKEDVHHSIISDLQNGNAET 419
R VL WR EV+ ++ Y NI K PY + + VH Q+
Sbjct: 802 RHVLNIWRILRGEVN---LLNYSLENVVLNIFKKQTPYYNQADKVHL-----WQSSRFHE 853
Query: 420 RRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAK 479
++ L Y L +L + E AR+ G+ ++SRG KV S + R AK
Sbjct: 854 KQILLNYMLNRTRYCLEILSACAIVTKIREQARIIGIDFMSVISRGSQFKVESIMFRIAK 913
Query: 480 QKNLVIPN--VKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYST 537
+N + P+ KQ + V+E ++ Y P+ LDF SLYPSI++AYNLCYST
Sbjct: 914 PENYIFPSPSAKQVAEQNALEALPLVMEPKSDLYNNPVVVLDFQSLYPSIIIAYNLCYST 973
Query: 538 LVTP----------------EDARKLNLPPECVNKTPSGETFVKSNLQKGILPEILEELL 581
+ P + +NL V +P+G +VK N++K +L ++LEEL+
Sbjct: 974 CLGPVKIVNGKVKLGFMFHSSNPNIVNLIKNDVYISPNGYAYVKENVRKSLLAKMLEELI 1033
Query: 582 AARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATV-GQLPCIEISSSVTSY 640
R K +K+ VL+ RQLALK+ AN YG+T A+ G++PC EI+ ++
Sbjct: 1034 ETRNMVKRGMKDCDSDYVNKVLNSRQLALKLIANVTYGYTSASFSGRMPCSEIADTIVET 1093
Query: 641 GRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYIS 700
GR+++ ++ + + + H A+V+YGDTDS+ V+ T E A +G++ A+ I+
Sbjct: 1094 GREILSYSLE-----YINTLDFCH-AKVVYGDTDSLFVELPGATKEQAFDIGQQLANNIT 1147
Query: 701 GTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTN-PEKFDKMDTKGIETVRRDNCLLVKNL 759
F PI+L+FEK+Y+P L++KKRY G + + +K + KGIETVRRD + + L
Sbjct: 1148 SRFPSPIRLKFEKIYFPCFLLAKKRYVGFKFESVSQKAPIFEAKGIETVRRDGTPVQQQL 1207
Query: 760 VTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGL-TKTGDDYEVKAAHVE 818
+ CL + +D+ + ++ ++ + + +K + + +
Sbjct: 1208 LRRCLEILFKTKDLSTVKKEFQNVCYQIMSGNVPVMDFCFSKEVRLEKYKELSTAPPGAV 1267
Query: 819 LAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIP-IDTHYYLENQ 877
+A R+ +D P G+RVPY+II AA G RS P L ++ +D +YY+ N
Sbjct: 1268 MARRLMTKDPRREPQYGERVPYLIIAAAPGTTLANRSVAPEEFLSSSFSQLDINYYINNS 1327
Query: 878 ISKPLLRIFEPILKNASKELLSGDHTR-SISISTPSNSGIMK-----FAKRQLSCIGCKA 931
+ PL R + +A R S+ ++ GI K F +L C +
Sbjct: 1328 LIPPLDRFLNLLGASAQSWYHEMPKPRTSLKLTETVKGGIQKKTLDTFLMEKL----CSS 1383
Query: 932 LISN---------GTLCSHCKGREAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQD- 981
+ N +LCS C K V+Q L+ C+ C D
Sbjct: 1384 CLKNNIEIIPDKINSLCSDCLKNPCATISKAVTQHNAYNKKLSLLFDICRGCSKLSSSDP 1443
Query: 982 VLCTSRDCPIFYRRKKAQ 999
VLC S C ++Y R K +
Sbjct: 1444 VLCKSNSCKVYYDRAKTE 1461
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 18/174 (10%)
Query: 116 SAAIIRIFGVTREGHSVCCKVHGFEPYFYI---SCPQGMG---PDDISHFHQILEGRM-- 167
+ +IR+FG+ E +VCC +H PY Y+ S + + PD +S + +
Sbjct: 35 TVPVIRVFGLNEEAETVCCFIHNVFPYIYVEYSSFAETLDLEVPDFLSQLQTSINYALAL 94
Query: 168 -REANRNSKVPQFVRHIEMVQKRSIMYYQQQKS-QPFLKIVVALPTMVASCRGILDRGIQ 225
AN + P V+ +++V + I +Y Q FLKI + P + +G
Sbjct: 95 AARANPETYKPA-VQSVQLV--KGIPFYGYSFCFQKFLKICLFSPKNRDRLVDLFRQGAI 151
Query: 226 LDGLGMKSFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAKTLSYCQLE 279
L+ K YES++ + L+FM+D N+ G I++ K LS+C +E
Sbjct: 152 LN----KVIQVYESHLPYLLQFMVDHNLYGCAPIDLD-DSIIKRDDLLSFCNVE 200
>sp|P28857|DPOL_HHV6U DNA polymerase OS=Human herpesvirus 6A (strain Uganda-1102) GN=U38
PE=3 SV=1
Length = 1012
Score = 271 bits (692), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 182/536 (33%), Positives = 278/536 (51%), Gaps = 52/536 (9%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
EKE + + I R + YCL+D+ L RL ++ + F E+AR+ V
Sbjct: 452 EKEQLSYKEIPKKFISGPSGRAVVGKYCLQDSVLVVRLFKQINYHFEVAEVARLAHVTAR 511
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGT-YEGATVLEARAGFYEKPIATL 518
++ GQ K+ +L +AK++N+++P++ + + QG Y+GATVLE + G+Y P
Sbjct: 512 CVVFEGQQKKIFPCILTEAKRRNMILPSMVSSHNRQGIGYKGATVLEPKTGYYAVPTVVF 571
Query: 519 DFASLYPSIMMAYNLCYSTLVTPEDARKLNLPPECVNKTPSGET--FVKSNLQKGILPEI 576
DF SLYPSIMMA+NLCYSTLV E + + ET FVK +++ +L +
Sbjct: 572 DFQSLYPSIMMAHNLCYSTLVLDERQIAGLSESDILTVKLGDETHRFVKPCIRESVLGSL 631
Query: 577 LEELLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSS 636
L++ LA R+ KA+++ DP+ K +LD +QLALK + NSVYG TGA G LPC+ I++S
Sbjct: 632 LKDWLAKRREVKAEMQNCSDPMMKLLLDKKQLALKTTCNSVYGVTGAAHGLLPCVAIAAS 691
Query: 637 VTSYGRQMIEHTKKLVEDKFTTVGGY-------------EHNAEVIYGDTDSVMVQFGVP 683
VT GR+M+ T V K + + + EVIYGDTDS+ +
Sbjct: 692 VTCLGREMLCSTVDYVNSKMQSEQFFCEEFGLTSSDFTGDLEVEVIYGDTDSIFMSVRNM 751
Query: 684 TVEAAMKLGREAADYISGTFIK-PIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDKMDT 742
++ ++ A +I+ K PIKLEFEK+ P +LI KKRY G + F
Sbjct: 752 VNQSLRRIAPMIAKHITDRLFKSPIKLEFEKILCPLILICKKRYIGRQDDSLLIF----- 806
Query: 743 KGIETVRRDNCLLVKNLVTECLHKILVDRDI-PGAVQYVKSTIS---------------- 785
KG++ VR+ +C VK +V + + + D ++ AV++ T +
Sbjct: 807 KGVDLVRKTSCDFVKGVVKDIVDLLFFDEEVQTAAVEFSHMTQTQLREQGVPVGIHKILR 866
Query: 786 -------DLLMNRMDLSLLVITKGLTKTGDDY-EVKAAHVELAERMRKRDAATAPNVGDR 837
+L NR D+ L+++ L+K Y + AH+ + R+ +R PNVGDR
Sbjct: 867 RLCEAREELFQNRADVRHLMLSSVLSKEMAAYKQPNLAHLSVIRRLAQRKEEI-PNVGDR 925
Query: 838 VPYVIIKAAKGAKA---YERSEDPIYVLENNIPIDTHYYLENQISKPLLRIFEPIL 890
+ YV+I + G K YE +EDP YV+E+ IPI Y + QI K + PI
Sbjct: 926 IMYVLIAPSIGNKQTHNYELAEDPNYVIEHKIPIHAEKYFD-QIIKAVTNAISPIF 980
Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 93/306 (30%), Positives = 144/306 (47%), Gaps = 30/306 (9%)
Query: 116 SAAIIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANRNSK 175
S +IR+FG T +G +C V G E YFY C G + + +L G ++ +
Sbjct: 113 SGTVIRMFGRTEDGEKICVNVFGQEQYFYCECVDGRSLKATIN-NLMLTGEVKMS----- 166
Query: 176 VPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFM 235
FV IE K S+ Y K V+ S R + + +Q +G F+
Sbjct: 167 -CSFV--IEPADKLSLYGYNANTVVNLFK--VSFGNFYVSQR--IGKILQNEG-----FV 214
Query: 236 TYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAKTLSYCQLEFDCLYSDIISRHPEGE 295
YE +V RF +D + W V + K S ++E +C SD++S E
Sbjct: 215 VYEIDVDVLTRFFVDNGFLSFGWYNVKKYIPQDMGKG-SNLEVEINCHVSDLVSL----E 269
Query: 296 FSKMAPFRILSFDIECAGRKGHFPEPTH--DPVIQVANLVTLQGEKQPFIRNVMTLKSCA 353
+ SFDIEC G+ G+FP+ + D VIQ++ +++ E R++ TL +C
Sbjct: 270 DVNWPLYGCWSFDIECLGQNGNFPDAENLGDIVIQIS-VISFDTEGDRDERHLFTLGTCE 328
Query: 354 PIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYL-IEKEDVHHSII--- 409
I GV + F +E ++LL + F+R P+ + GYNI FDL YL I + ++H I
Sbjct: 329 KIDGVHIYEFASEFELLLGFFIFLRIESPEFITGYNINNFDLKYLCIRMDKIYHYDIGCF 388
Query: 410 SDLQNG 415
S L+NG
Sbjct: 389 SKLKNG 394
>sp|O36363|DPOL_ALHV1 DNA polymerase catalytic subunit OS=Alcelaphine herpesvirus 1 (strain
C500) GN=9 PE=3 SV=1
Length = 1026
Score = 269 bits (687), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 174/538 (32%), Positives = 285/538 (52%), Gaps = 53/538 (9%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+K DV + I L G+++ R +L +YC++DA L LL M E+A++ +P
Sbjct: 485 KKNDVSYKDIPILFKGSSKDRAKLGMYCVQDAVLVIDLLKHFMTHIEITEIAKIANIPTR 544
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLD 519
+LS GQ I+V + LL A++++ ++P + GS++G Y+GATV+ +GFY P+ +D
Sbjct: 545 RVLSDGQQIRVFTCLLAAAQERDYILP-MPVTGSQEG-YQGATVINPISGFYNTPVLVVD 602
Query: 520 FASLYPSIMMAYNLCYSTLVTPEDARKL-NLPP---ECVNKTPSGETFVKSNLQKGILPE 575
FASLYPSI+ A+NLCYSTL+ +D K NL E + FVK + + +L
Sbjct: 603 FASLYPSIIQAHNLCYSTLIKQQDLPKFTNLTANDYETFMISGGPVHFVKKHKTESLLAS 662
Query: 576 ILEELLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISS 635
+L+ LA RK K +L++ +D K +LD +QLA+K++ NSVYGFTG G LPC+ I+
Sbjct: 663 LLKTWLAKRKSIKKELEQCQDAKMKTILDKQQLAIKVTCNSVYGFTGVASGMLPCLMIAE 722
Query: 636 SVTSYGRQMIEHTKKLVED----KFTTVGGYEHNA---------EVIYGDTDSVMVQFGV 682
+VT GR M+E TK+ VE+ + +E V+YGDTDS+ ++
Sbjct: 723 TVTLQGRTMLEKTKQFVENVTVEYLQKICNFEVQCLPQHPNPKFRVVYGDTDSLFIKCEG 782
Query: 683 PTVEAAMKLGREAADYISGT-FIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDKMD 741
++ +K G A + S F PIKLE EKV+ +L++KKRY G+ N K+
Sbjct: 783 FAMDTVIKFGDALASHTSSVLFASPIKLESEKVFKCLMLLTKKRYVGILSNN-----KIL 837
Query: 742 TKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQ----------------------- 778
KG++ VR+ C+ V+ + L +L D ++ A Q
Sbjct: 838 MKGVDLVRKTACVYVQEVTRAVLELLLRDEEVKVAAQTLSYSPVANCFKTEPLLGFLKII 897
Query: 779 -YVKSTISDLLMNRMDLSLLVITKGLTKTGDDYE-VKAAHVELAERMRKRDAATAPNVGD 836
+ + SDL N++ ++ L + L+K +Y+ H+ + +++ R+ P + D
Sbjct: 898 DILNQSYSDLKSNKVPVANLTYSTELSKPFTEYKTTNLPHLAVYKKLAMRNEE-LPQIHD 956
Query: 837 RVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQISKPLLRIFEPILKNAS 894
R+ YV +K + G + +EDP Y +N IPI + +Y + +I + I + + N +
Sbjct: 957 RISYVFVK-SNGHLVSDMAEDPTYAEQNKIPIASDWYFD-KIIHGVANILQCVFNNNT 1012
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 99/392 (25%), Positives = 166/392 (42%), Gaps = 72/392 (18%)
Query: 24 QQATTPTTPVIDDEFLDEDVFLDETLLPEDEESLILRDIEQRQDFASRLAKWARPPLSSG 83
+ A PT +D E L +LPE++ SL WA L G
Sbjct: 78 ETAIPPTAFYLDSELL---------VLPENKSSL-----------------WANETL--G 109
Query: 84 YVSQCQSIMFQQLDIDYVIGDSNR----------ELLPLSSGSAAIIRIFGVTREGHSVC 133
Q +MF DI V+ ++R +++P S +++++G T SVC
Sbjct: 110 NCHSIQELMFHVYDIVEVVYAADRCDSIPPHLQADIVP----SGIVLKLYGRTETNQSVC 165
Query: 134 CKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANRNSKVPQFVRHIEMVQKRSIMY 193
V G + YFY+ D S+ + ++ ++E S H+ QK+ +
Sbjct: 166 VNVFGQKVYFYVY------NDSYSNLQRDVQHILQETGHRSTG----LHLCSTQKKFLSG 215
Query: 194 YQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFMTYESNVLFALRFMIDCNI 253
Y + + + + M + G L+ +G + F E+NV + RF++D
Sbjct: 216 YSTSSHEVYQITLGSSSAMRSLASG-------LEQIGYRVF---EANVDASTRFIVDNKF 265
Query: 254 VGGNWIEVPVGKYRKTAKTLSYCQLEFDCLYSDIISRHPEGEFSKMAPFRILSFDIECAG 313
W R ++ LE+DC DI E + ILSFDIEC G
Sbjct: 266 STFGWYTCTSPLARPRVHQDAHTHLEYDCSVGDI---QYHAERLDWPQYNILSFDIECLG 322
Query: 314 RKGHFP--EPTHDPVIQVANLVTLQG--EKQPFIRNVMTLKSCAPIVGVDVMSFETERDV 369
G FP + D +IQ++ ++ G +KQ I ++++ +C I V V F +E D+
Sbjct: 323 ESG-FPSADKDEDMIIQISCVIWTVGGDKKQECI--LLSVGTCDLIENVKVYEFPSEMDL 379
Query: 370 LLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
L + +R+ +++ GYNIC FD PY++ +
Sbjct: 380 LYGFFTLLRDYGIEMITGYNICNFDFPYILNR 411
>sp|P03198|DPOL_EBVB9 DNA polymerase catalytic subunit OS=Epstein-Barr virus (strain B95-8)
GN=BALF5 PE=1 SV=1
Length = 1015
Score = 260 bits (664), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 173/548 (31%), Positives = 269/548 (49%), Gaps = 58/548 (10%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+KEDVH+ I L E RRRL +YC++D+ L LL+ + E+A++ +P
Sbjct: 467 KKEDVHYKEIPRLFAAGPEGRRRLGMYCVQDSALVMDLLNHFVIHVEVAEIAKIAHIPCR 526
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLD 519
+L GQ I+V S LL A+++N ++P + S++ Y+GATV++ +GFY P+ +D
Sbjct: 527 RVLDDGQQIRVFSCLLAAAQKENFILP--MPSASDRDGYQGATVIQPLSGFYNSPVLVVD 584
Query: 520 FASLYPSIMMAYNLCYSTLVTP-EDARKLNLPP----ECVNKTPSGETFVKSNLQKGILP 574
FASLYPSI+ A+NLCYST++TP E+ R L P E T FVK ++ + L
Sbjct: 585 FASLYPSIIQAHNLCYSTMITPGEEHRLAGLRPGEDYESFRLTGGVYHFVKKHVHESFLA 644
Query: 575 EILEELLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEIS 634
+L LA RK K L +DP ++ +LD +QLA+K + N+VYGFTG G PC+ I+
Sbjct: 645 SLLTSWLAKRKAIKKLLAACEDPRQRTILDKQQLAIKCTCNAVYGFTGVANGLFPCLSIA 704
Query: 635 SSVTSYGRQMIEHTKKLVE--------------DKFTTVGGYEHNAEVIYGDTDSVMVQF 680
+VT GR M+E K VE D + + E VIYGDTDS+ ++
Sbjct: 705 ETVTLQGRTMLERAKAFVEALSPANLQALAPSPDAWAPLNP-EGQLRVIYGDTDSLFIEC 763
Query: 681 -GVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDK 739
G E AA F+ PI LE EK + +LI+KKRY G+ K
Sbjct: 764 RGFSESETLRFADALAAHTTRSLFVAPISLEAEKTFSCLMLITKKRYVGVLTDG-----K 818
Query: 740 MDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGA----------------------- 776
KG+E VR+ C V+ L +L D + A
Sbjct: 819 TLMKGVELVRKTACKFVQTRCRRVLDLVLADARVKEAASLLSHRPFQESFTQGLPVGFLP 878
Query: 777 -VQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYE-VKAAHVELAERMRKRDAATAPNV 834
+ + +DL R+ + L + L++ Y+ + H+ + ++ +R+ P +
Sbjct: 879 VIDILNQAYTDLREGRVPMGELCFSTELSRKLSAYKSTQMPHLAVYQKFVERNEEL-PQI 937
Query: 835 GDRVPYVIIK---AAKGAKAYERSEDPIYVLENNIPIDTHYYLENQISKPLLRIFEPILK 891
DR+ YV ++ KGA+ E +EDP Y + +P+ +Y +++ + I + +
Sbjct: 938 HDRIQYVFVEPKGGVKGARKTEMAEDPAYAERHGVPVAVDHYF-DKLLQGAANILQCLFD 996
Query: 892 NASKELLS 899
N S LS
Sbjct: 997 NNSGAALS 1004
Score = 121 bits (303), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 153/298 (51%), Gaps = 33/298 (11%)
Query: 119 IIRIFGVTR-EGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANRNSKVP 177
+I++ G + +G SVC V G + YFY S PQG+ D+ +L ++ + + + P
Sbjct: 126 VIKLLGRRKADGASVCVNVFGQQAYFYASAPQGL---DVEF--AVLSA-LKASTFDRRTP 179
Query: 178 QFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFMTY 237
V +E V +RSIM Y + KI ++ P V L D G + F
Sbjct: 180 CRVS-VEKVTRRSIMGYGNHAGD-YHKITLSHPNSVCHVATWLQ-----DKHGCRIF--- 229
Query: 238 ESNVLFALRFMIDCNIVGGNWIE----VPVGKYRKTAKTLSYCQLEFDCLYSDIISRHPE 293
E+NV RF++D + V W +P ++R SY +LE+DC D+ R
Sbjct: 230 EANVDATRRFVLDNDFVTFGWYSCRRAIPRLQHRD-----SYAELEYDCEVGDLSVRR-- 282
Query: 294 GEFSKMAPFRILSFDIECAGRKGHFPEPTH--DPVIQVANLVTLQGEKQPFIRNVM-TLK 350
E S ++ L+FDIEC G +G FP T+ D ++Q++ ++ GE+ R ++ TL
Sbjct: 283 -EDSSWPSYQALAFDIECLGEEG-FPTATNEADLILQISCVLWSTGEEAGRYRRILLTLG 340
Query: 351 SCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEKEDVHHSI 408
+C I GV+V F +E D+L A+ IR++ +++ GYN+ FD PY++++ +SI
Sbjct: 341 TCEDIEGVEVYEFPSELDMLYAFFQLIRDLSVEIVTGYNVANFDWPYILDRARHIYSI 398
>sp|Q1HVC1|DPOL_EBVA8 DNA polymerase catalytic subunit OS=Epstein-Barr virus (strain AG876)
GN=BALF5 PE=3 SV=1
Length = 1015
Score = 259 bits (663), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 173/548 (31%), Positives = 269/548 (49%), Gaps = 58/548 (10%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+KEDVH+ I L E RRRL +YC++D+ L LL+ + E+A++ +P
Sbjct: 467 KKEDVHYKEIPRLFAAGPEGRRRLGMYCVQDSALVMDLLNHFVIHVEVAEIAKIAHIPCR 526
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLD 519
+L GQ I+V S LL A+++N ++P + S++ Y+GATV++ +GFY P+ +D
Sbjct: 527 RVLDDGQQIRVFSCLLAAAQKENFILP--MPSASDRDGYQGATVIQPLSGFYNSPVLVVD 584
Query: 520 FASLYPSIMMAYNLCYSTLVTP-EDARKLNLPP----ECVNKTPSGETFVKSNLQKGILP 574
FASLYPSI+ A+NLCYST++TP E+ R L P E T FVK ++ + L
Sbjct: 585 FASLYPSIIQAHNLCYSTMITPGEEHRLAGLRPGEDYESFRLTGGVYHFVKKHVHESFLA 644
Query: 575 EILEELLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEIS 634
+L LA RK K L +DP ++ +LD +QLA+K + N+VYGFTG G PC+ I+
Sbjct: 645 SLLTSWLAKRKAIKKLLAACEDPRQRTILDKQQLAIKCTCNAVYGFTGVANGLFPCLSIA 704
Query: 635 SSVTSYGRQMIEHTKKLVE--------------DKFTTVGGYEHNAEVIYGDTDSVMVQF 680
+VT GR M+E K VE D + + E VIYGDTDS+ ++
Sbjct: 705 ETVTLQGRTMLERAKAFVEALSPANLQALAPSPDAWAPLNP-EGQLRVIYGDTDSLFIEC 763
Query: 681 -GVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDK 739
G E AA F+ PI LE EK + +LI+KKRY G+ K
Sbjct: 764 RGFSESETLRFAEALAAHTTRSLFVAPISLEAEKTFSCLMLITKKRYVGVLTDG-----K 818
Query: 740 MDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGA----------------------- 776
KG+E VR+ C V+ L +L D + A
Sbjct: 819 TLMKGVELVRKTACKFVQTRCRRVLDLVLADARVKEAASLLSHRPFQESFTQGLPVGFLP 878
Query: 777 -VQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYE-VKAAHVELAERMRKRDAATAPNV 834
+ + +DL R+ + L + L++ Y+ + H+ + ++ +R+ P +
Sbjct: 879 VIDILNQAYTDLREGRVPMGELCFSTELSRKLSAYKSTQMPHLAVYQKFVERNEEL-PQI 937
Query: 835 GDRVPYVIIK---AAKGAKAYERSEDPIYVLENNIPIDTHYYLENQISKPLLRIFEPILK 891
DR+ YV ++ KGA+ E +EDP Y + +P+ +Y +++ + I + +
Sbjct: 938 HDRIQYVFVEPKGGVKGARKTEMAEDPAYAERHGVPVAVDHYF-DKLLQGAANILQCLFD 996
Query: 892 NASKELLS 899
N S LS
Sbjct: 997 NNSGAALS 1004
Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 153/298 (51%), Gaps = 33/298 (11%)
Query: 119 IIRIFGVTR-EGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANRNSKVP 177
+I++ G + +G SVC V G + YFY S PQG+ D+ +L ++ + + + P
Sbjct: 126 VIKLLGRRKADGASVCVNVFGQQAYFYASAPQGL---DVEF--AVLSA-LKASTFDRRTP 179
Query: 178 QFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFMTY 237
V +E V +RSIM Y + KI ++ P V L D G + F
Sbjct: 180 CRVS-VEKVTRRSIMGYGNHAGD-YHKITLSHPNSVCHVATWLQ-----DKHGCRIF--- 229
Query: 238 ESNVLFALRFMIDCNIVGGNWIE----VPVGKYRKTAKTLSYCQLEFDCLYSDIISRHPE 293
E+NV RF++D + V W +P ++R SY +LE+DC D+ R
Sbjct: 230 EANVDATRRFVLDNDFVTFGWYSCRRAIPRLQHRD-----SYAELEYDCEVGDLSVRR-- 282
Query: 294 GEFSKMAPFRILSFDIECAGRKGHFPEPTH--DPVIQVANLVTLQGEKQPFIRNVM-TLK 350
E S ++ L+FDIEC G +G FP T+ D ++Q++ ++ GE+ R ++ TL
Sbjct: 283 -EDSSWPSYQALAFDIECLGEEG-FPTATNEADLILQISCVLWSTGEEAGRYRRILLTLG 340
Query: 351 SCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEKEDVHHSI 408
+C I GV+V F +E D+L A+ IR++ +++ GYN+ FD PY++++ +SI
Sbjct: 341 TCEDIEGVEVYEFPSELDMLYAFFQLIRDLSVEIVTGYNVANFDWPYILDRARHIYSI 398
>sp|Q3KSP1|DPOL_EBVG DNA polymerase catalytic subunit OS=Epstein-Barr virus (strain GD1)
GN=BALF5 PE=3 SV=1
Length = 1015
Score = 259 bits (663), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 173/548 (31%), Positives = 269/548 (49%), Gaps = 58/548 (10%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+KEDVH+ I L E RRRL +YC++D+ L LL+ + E+A++ +P
Sbjct: 467 KKEDVHYKEIPRLFAAGPEGRRRLGMYCVQDSALVMDLLNHFVIHVEVAEIAKIAHIPCR 526
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLD 519
+L GQ I+V S LL A+++N ++P + S++ Y+GATV++ +GFY P+ +D
Sbjct: 527 RVLDDGQQIRVFSCLLAAAQKENFILP--MPSASDRDGYQGATVIQPLSGFYNSPVLVVD 584
Query: 520 FASLYPSIMMAYNLCYSTLVTP-EDARKLNLPP----ECVNKTPSGETFVKSNLQKGILP 574
FASLYPSI+ A+NLCYST++TP E+ R L P E T FVK ++ + L
Sbjct: 585 FASLYPSIIQAHNLCYSTMITPGEEHRLAGLRPGEDYESFRLTGGVYHFVKKHVHESFLA 644
Query: 575 EILEELLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEIS 634
+L LA RK K L +DP ++ +LD +QLA+K + N+VYGFTG G PC+ I+
Sbjct: 645 SLLTSWLAKRKAIKKLLAACEDPRQRTILDKQQLAIKCTCNAVYGFTGVANGLFPCLSIA 704
Query: 635 SSVTSYGRQMIEHTKKLVE--------------DKFTTVGGYEHNAEVIYGDTDSVMVQF 680
+VT GR M+E K VE D + + E VIYGDTDS+ ++
Sbjct: 705 ETVTLQGRTMLERAKAFVEALSPANLQALAPSPDAWAPLNP-EGQLRVIYGDTDSLFIEC 763
Query: 681 -GVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDK 739
G E AA F+ PI LE EK + +LI+KKRY G+ K
Sbjct: 764 RGFSESETLRFAEALAAHTTRSLFVAPISLEAEKTFSCLMLITKKRYVGVLTDG-----K 818
Query: 740 MDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGA----------------------- 776
KG+E VR+ C V+ L +L D + A
Sbjct: 819 TLMKGVELVRKTACKFVQTRCRRVLDLVLADARVKEAASLLSHRPFQESFTQGLPVGFLP 878
Query: 777 -VQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYE-VKAAHVELAERMRKRDAATAPNV 834
+ + +DL R+ + L + L++ Y+ + H+ + ++ +R+ P +
Sbjct: 879 VIDILNQAYTDLREGRVPMGELCFSTELSRKLSAYKSTQMPHLAVYQKFVERNEEL-PQI 937
Query: 835 GDRVPYVIIK---AAKGAKAYERSEDPIYVLENNIPIDTHYYLENQISKPLLRIFEPILK 891
DR+ YV ++ KGA+ E +EDP Y + +P+ +Y +++ + I + +
Sbjct: 938 HDRIQYVFVEPKGGVKGARKTEMAEDPAYAERHGVPVAVDHYF-DKLLQGAANILQCLFD 996
Query: 892 NASKELLS 899
N S LS
Sbjct: 997 NNSGAALS 1004
Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 153/298 (51%), Gaps = 33/298 (11%)
Query: 119 IIRIFGVTR-EGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANRNSKVP 177
+I++ G + +G SVC V G + YFY S PQG+ D+ +L ++ + + + P
Sbjct: 126 VIKLLGRRKADGASVCVNVFGQQAYFYASAPQGL---DVEF--AVLSA-LKASTFDRRTP 179
Query: 178 QFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFMTY 237
V +E V +RSIM Y + KI ++ P V L D G + F
Sbjct: 180 CRVS-VEKVTRRSIMGYGNHAGD-YHKITLSHPNSVCHVATWLQ-----DKHGCRIF--- 229
Query: 238 ESNVLFALRFMIDCNIVGGNWIE----VPVGKYRKTAKTLSYCQLEFDCLYSDIISRHPE 293
E+NV RF++D + V W +P ++R SY +LE+DC D+ R
Sbjct: 230 EANVDATRRFVLDNDFVTFGWYSCRRAIPRLQHRD-----SYAELEYDCEVGDLSVRR-- 282
Query: 294 GEFSKMAPFRILSFDIECAGRKGHFPEPTH--DPVIQVANLVTLQGEKQPFIRNVM-TLK 350
E S ++ L+FDIEC G +G FP T+ D ++Q++ ++ GE+ R ++ TL
Sbjct: 283 -EDSSWPSYQALAFDIECLGEEG-FPTATNEADLILQISCVLWSTGEEAGRYRRILLTLG 340
Query: 351 SCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEKEDVHHSI 408
+C I GV+V F +E D+L A+ IR++ +++ GYN+ FD PY++++ +SI
Sbjct: 341 TCEDIEGVEVYEFPSELDMLYAFFQLIRDLSVEIVTGYNVANFDWPYILDRARHIYSI 398
>sp|A7U6F2|DPOL_POV01 DNA polymerase OS=Pyramimonas orientalis virus GN=dpo PE=3 SV=1
Length = 1206
Score = 252 bits (644), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 182/564 (32%), Positives = 282/564 (50%), Gaps = 89/564 (15%)
Query: 399 IEKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPI 458
+ K+DV I Q G + R ++A YC++D L L+ KL N + MA V VP+
Sbjct: 577 LAKDDVSPKEIFACQKGTSADRAKIAKYCVQDCALCNMLIIKLEVFANNMGMANVCLVPL 636
Query: 459 SFLLSRGQSIKVLSQLLRKAKQKNLVIPNVK--QAGSEQGTYEGATVLEARAGFY-EKPI 515
S++ RGQ IK+ S + ++ + N +IP +K Q E YEGA VL+ G Y E PI
Sbjct: 637 SYIFMRGQGIKIFSLVAKQCRDDNFIIPLIKFDQDSEEVEGYEGAIVLDPIPGIYVEAPI 696
Query: 516 ATLDFASLYPSIMMAYNLCYSTLVTPEDARKLNLPP-ECVN------------KTPSGET 562
+ +D+ASLYPS M++ N+ + ++V D + NLP E V+ KT E
Sbjct: 697 SVMDYASLYPSSMISENISHDSIVL--DKKYDNLPGVEYVDVTYDIFTGVGDKKTKVDEK 754
Query: 563 FVK----SNLQKGILPEILEELLAARKRAKADL-----------------KEAKDPLE-- 599
+ N +KG+LP IL +LL+ RK + + E D +
Sbjct: 755 TCRYAQFKNNEKGVLPRILMKLLSQRKSTRKQILHKTVTTNDNRSFTGLVDENDDSVTIK 814
Query: 600 -------------------------KAVLDGRQLALKISANSVYGFTGATVGQLPCIEIS 634
KA+LDG QLA KI+ANS+YG GA + E++
Sbjct: 815 TTDNNTITLSRNEILSSVDTYNDFMKAILDGLQLAYKITANSLYGQVGARTSPIYMKELA 874
Query: 635 SSVTSYGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVP---------TV 685
+S T+ GR +I K+ +E + A+V+YGDTDS+ V F V +
Sbjct: 875 ASTTATGRNLIMKAKEFMETNY--------GADVVYGDTDSIFVDFKVKEKYGLLDKDAL 926
Query: 686 EAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLLISKKRYAG-LYWTNPEKFDKMDTKG 744
+ ++ + +A+D P LE+EK ++P++++SKK+Y G LY + K+ K + G
Sbjct: 927 QKSIDISVKASDAFKKELKAPHDLEYEKTFFPFIILSKKKYVGNLYEHDVNKY-KQKSMG 985
Query: 745 IETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLT 804
I RRDN +VK + + +L ++I A+ ++K ++ L+ + LVITK L
Sbjct: 986 IVLKRRDNANIVKIVYGGIIDILLNRQNISFAINFLKESLRKLVNGEFHMDDLVITKTLR 1045
Query: 805 KTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAY---ERSEDPIYV 861
T D + AH LA+RMR RD +AP DRVPY I+ K+ ++ E P Y+
Sbjct: 1046 TTYKD-PTRIAHKVLADRMRNRDPGSAPQSSDRVPYAYIEHDIKNKSLLQGDKIEHPSYI 1104
Query: 862 LENNIPIDTHYYLENQISKPLLRI 885
ENN+ ID +Y+ NQ+ KP+ ++
Sbjct: 1105 KENNVKIDYIFYITNQLMKPICQL 1128
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 110/243 (45%), Gaps = 26/243 (10%)
Query: 85 VSQCQSIMFQQLD---IDYVIGDSNRELLPLSSGSAAIIRIFGVTREGHSVCCKVHGFEP 141
+ + ++ FQ +D DY DSN S II++FGVT EG+S+C V F+P
Sbjct: 10 LDESKNACFQVIDWYHFDYTNEDSNE--------SQYIIKMFGVTEEGYSLCVNVTDFQP 61
Query: 142 YFYISCPQGMGPDDISHFHQILEGRMREANRNSKVPQFVRH---IEMVQKRSIMYYQQQK 198
+FYIS F Q + E N K+P ++ ++ V+K+SI +
Sbjct: 62 HFYISSKTK------DKFTQTELDDLEEYIIN-KLPYNFKNSLSVKQVRKKSIWGFTNNV 114
Query: 199 SQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFMTYESNVLFALRFMIDCNIVGGNW 258
+ ++K+ + R +L I++ G F ESN+ LRF+ NI G W
Sbjct: 115 YKQYIKLSFQNIMSMYITRKMLQYRIKV-GRVQVQFDLNESNIDPFLRFIHIQNIKPGGW 173
Query: 259 IEVPVGKYRKTAKTLSYCQLEFDCLYSDIISRHPEGEFSKMAPFRILSFDIECAGRKGHF 318
I + + S CQ+ ++ P + +K+AP I+SFDIEC G F
Sbjct: 174 ISIDEYTTDVDDELESKCQINITTSCENV---QPL-DCNKVAPVNIMSFDIECTSSSGDF 229
Query: 319 PEP 321
P P
Sbjct: 230 PVP 232
Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%)
Query: 318 FPEPTHDPVIQVANLVTLQGEKQPFIRNVMTLKSCAPIVGVDVMSFETERDVLLAWRDFI 377
P DP+IQ+ + + G + +NV+TL +C I GVDV++ +TE ++ W I
Sbjct: 361 LPPLKGDPIIQIGSTIHQYGSTKCSYKNVITLDTCNDIPGVDVITCKTETALIKEWCKLI 420
Query: 378 REVDPDVMIGYNICKFDLPYLIEK 401
VDPD+M GYNI FD Y+ ++
Sbjct: 421 HRVDPDIMTGYNIFGFDFDYIYKR 444
>sp|P14284|DPOZ_YEAST DNA polymerase zeta catalytic subunit OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=REV3 PE=1 SV=1
Length = 1504
Score = 249 bits (635), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 194/701 (27%), Positives = 323/701 (46%), Gaps = 68/701 (9%)
Query: 365 TERDVLLAWRDFIREVDPDVMI----GYNICKFDLPYLIEKEDVHHSIISDLQNGNAETR 420
T R ++ WR +V+ +NI LP+ ++++ N T
Sbjct: 819 TGRHMINIWRALRSDVNLTQYTIESAAFNILHKRLPHF------SFESLTNMWNAKKSTT 872
Query: 421 RRLAV--YCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKA 478
V Y L A + +LL K +I +E AR+ G+ + RG KV S L+R
Sbjct: 873 ELKTVLNYWLSRAQINIQLLRKQDYIARNIEQARLIGIDFHSVYYRGSQFKVESFLIRIC 932
Query: 479 KQKNLVI--PNVKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYS 536
K ++ ++ P K ++ V+E + FY+ P+ LDF SLYPSIM+ YN CYS
Sbjct: 933 KSESFILLSPGKKDVRKQKALECVPLVMEPESAFYKSPLIVLDFQSLYPSIMIGYNYCYS 992
Query: 537 TLV--------TPED--ARKLNLPPEC-------VNKTPSGETFVKSNLQKGILPEILEE 579
T++ T + K +LP V P+G + K++++K L ++L +
Sbjct: 993 TMIGRVREINLTENNLGVSKFSLPRNILALLKNDVTIAPNGVVYAKTSVRKSTLSKMLTD 1052
Query: 580 LLAARKRAKADLKEAKD--PLEKAVLDGRQLALKISANSVYGFTGATV-GQLPCIEISSS 636
+L R K + E D K +L+ +QLALK+ AN YG+T A+ G++PC +++ S
Sbjct: 1053 ILDVRVMIKKTMNEIGDDNTTLKRLLNNKQLALKLLANVTYGYTSASFSGRMPCSDLADS 1112
Query: 637 VTSYGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAA 696
+ GR+ +E ++E T NA+V+YGDTDS+ V T A +G A
Sbjct: 1113 IVQTGRETLEKAIDIIEKDET------WNAKVVYGDTDSLFVYLPGKTAIEAFSIGHAMA 1166
Query: 697 DYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTNP-EKFDKMDTKGIETVRRDNCLL 755
+ ++ KPI L+FEKVY+P +LISKKRY G + +P + D KGIETVRRD
Sbjct: 1167 ERVTQNNPKPIFLKFEKVYHPSILISKKRYVGFSYESPSQTLPIFDAKGIETVRRDGIPA 1226
Query: 756 VKNLVTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKA- 814
+ ++ +C+ + +D+ +Y+++ + + ++ K + E A
Sbjct: 1227 QQKIIEKCIRLLFQTKDLSKIKKYLQNEFFKIQIGKVSAQDFCFAKEVKLGAYKSEKTAP 1286
Query: 815 AHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLEN-NIPIDTHYY 873
A + +R D P +R+PY+++K +G ER P LE N+ +D+ YY
Sbjct: 1287 AGAVVVKRRINEDHRAEPQYKERIPYLVVKGKQGQLLRERCVSPEEFLEGENLELDSEYY 1346
Query: 874 LENQISKPLLRIFEPI---LKNASKELLSGDHTRSISISTPSNSGIMKFAKRQLSCIGCK 930
+ + PL R+F I + N ++E++ ++ S +T I + C +
Sbjct: 1347 INKILIPPLDRLFNLIGINVGNWAQEIVK---SKRASTTTTKVENITRVGTSATCCNCGE 1403
Query: 931 AL--ISNGTLCSHCKGREAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDV------ 982
L I + LC C + + + + + + + L T C+ C D
Sbjct: 1404 ELTKICSLQLCDDCLEKRSTTTLSFLIKKLKRQKEYQTLKTVCRTCSYRYTSDAGIENDH 1463
Query: 983 ---LCTSRDCPIFYRRKKAQKDM--------AEAKLQLDRW 1012
C S DCP+FY R KA++ + EA + L+ W
Sbjct: 1464 IASKCNSYDCPVFYSRVKAERYLRDNQSVQREEALISLNDW 1504
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 79/183 (43%), Gaps = 26/183 (14%)
Query: 105 SNRELLPLSSGSAA-IIRIFGVTREGHSVCCKVHGFEPYFYISCP-QGMGPDDISH---- 158
S+ E LPL+ S IR+FG GH V C VHG PY +I Q + H
Sbjct: 43 SHGESLPLNQFSQVPNIRVFGALPTGHQVLCHVHGILPYMFIKYDGQITDTSTLRHQRCA 102
Query: 159 -FHQILEGRMREANRNSKVPQ------------FVRHIEMVQKRSIMYYQQQKS-QPFLK 204
H+ LE ++R + + K + FV + +V + I +Y F K
Sbjct: 103 QVHKTLEVKIRASFKRKKDDKHDLAGDKLGNLNFVADVSVV--KGIPFYGYHVGWNLFYK 160
Query: 205 IVVALPTMVASCRGILDRGIQLDGLGMKSFMTYESNVLFALRFMIDCNIVGGNWIEVPVG 264
I + P SC + I+ + K F YES++ + L++ D N+ G +WI V
Sbjct: 161 ISLLNP----SCLSRISELIRDGKIFGKKFEIYESHIPYLLQWTADFNLFGCSWINVDRC 216
Query: 265 KYR 267
+R
Sbjct: 217 YFR 219
Score = 39.3 bits (90), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 76/186 (40%), Gaps = 23/186 (12%)
Query: 260 EVPVGKYRKTAKTLSYCQLEFDCLY---SDIISRHPEGEFSKMAPFRILSFDIECAGRKG 316
+VP +KT +S LY SD+ + + S L+ +I R
Sbjct: 622 KVPSMGNKKTESQISMHTPHSKFLYKFASDVSGKQKRKKSSVHDSLTHLTLEIHANTRSD 681
Query: 317 HFPEPTHDPVIQVANLVTLQGEKQPF-----IRNVMTLKSCAP-----------IVGVDV 360
P+P D V + + L+ E P +M + + I + V
Sbjct: 682 KIPDPAIDEVSMI--IWCLEEETFPLDLDIAYEGIMIVHKASEDSTFPTKIQHCINEIPV 739
Query: 361 MSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK-EDVHH-SIISDLQNGNAE 418
M +E+E ++ A D + +DPD++ G+ I F Y+IE+ + +H I+ +L +
Sbjct: 740 MFYESEFEMFEALTDLVLLLDPDILSGFEIHNFSWGYIIERCQKIHQFDIVRELARVKCQ 799
Query: 419 TRRRLA 424
+ +L+
Sbjct: 800 IKTKLS 805
>sp|P24907|DPOL_SHV21 DNA polymerase OS=Saimiriine herpesvirus 2 (strain 11) GN=9 PE=3
SV=1
Length = 1009
Score = 246 bits (629), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 175/543 (32%), Positives = 276/543 (50%), Gaps = 60/543 (11%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+KEDV + I L E R ++ +YC+ D+ L +LL M E+A++ +P
Sbjct: 457 KKEDVSYKDIMPLFMSGPEGRAKIGLYCVIDSVLVMKLLKFFMIHVEISEIAKLAKIPTR 516
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLD 519
+L+ GQ I+V S LL A+ +N ++P ++ ++GATV+ GFY + +D
Sbjct: 517 RVLTDGQQIRVFSCLLAAARAENYILPVSNDVNADG--FQGATVINPIPGFYNNAVLVVD 574
Query: 520 FASLYPSIMMAYNLCYSTLVTPEDARKLNLPPECVNKTPSGETF---------VKSNLQK 570
FASLYPSI+ A+NLCYSTL+ P A N P K+ ETF VK ++Q
Sbjct: 575 FASLYPSIIQAHNLCYSTLI-PHHALH-NYPHL---KSSDYETFMLSSGPIHFVKKHIQA 629
Query: 571 GILPEILEELLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPC 630
+L +L L+ RK + L E +D K +LD +QLA+K++ N+VYGFTG G LPC
Sbjct: 630 SLLSRLLTVWLSKRKAIRQKLAECEDLDTKTILDKQQLAIKVTCNAVYGFTGVASGLLPC 689
Query: 631 IEISSSVTSYGRQMIEHTKKLVE--------DKFTTVGGYEHNAE--VIYGDTDSVMVQF 680
I I+ +VT GR M+E +K +E + + +E +A+ VIYGDTDS+ V+
Sbjct: 690 ISIAETVTLQGRTMLEKSKIFIEAMTPDTLQEIVPHIVKHEPDAKFRVIYGDTDSLFVEC 749
Query: 681 GVPTVEAAMKLGREAADYIS-GTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDK 739
+V+ +K G A + S F PIKLE EK + LL++KKRY G+ DK
Sbjct: 750 VGYSVDTVVKFGDFLAAFTSEKLFNAPIKLESEKTFQCLLLLAKKRYIGILSN-----DK 804
Query: 740 MDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQYVKSTISD------------- 786
+ KG++ VR+ C V+N ++ L+ IL D ++ A Q + + D
Sbjct: 805 LLMKGVDLVRKTACKFVQNTSSKILNLILKDPEVKAAAQLLSTKDPDYAFREGLPDGFLK 864
Query: 787 -----------LLMNRMDLSLLVITKGLTKTGDDYEVK-AAHVELAERMRKRDAATAPNV 834
L ++ + L + L++ Y+ + H+ + +++ R P V
Sbjct: 865 VIDILNESHKNLRTGQVPVEELTFSTELSRPISSYKTENLPHLTVYKKIITRHEE-PPQV 923
Query: 835 GDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQISKPLLRIFEPILKNAS 894
DR+PYV + + +EDP Y ++NNIPI Y + I + I + + K++S
Sbjct: 924 HDRIPYVFVGKTTSCIS-NMAEDPTYTVQNNIPIAVDLYFDKLIHG-VANIIQCLFKDSS 981
Query: 895 KEL 897
K +
Sbjct: 982 KTV 984
Score = 113 bits (282), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 86/325 (26%), Positives = 150/325 (46%), Gaps = 41/325 (12%)
Query: 89 QSIMFQQLDIDYVIGDSNR----------ELLPLSSGSAAIIRIFGVTREGHSVCCKVHG 138
QSI F DI +R +++P + ++++ G T EG SVC V G
Sbjct: 86 QSITFHIYDIVETTYSEDRCNDIPFKFQTDIIP----NGTVLKLLGRTLEGASVCVNVFG 141
Query: 139 FEPYFYISCPQGMGPDDISHFHQILEGRMREANRNSKVPQFVRHIEMVQKRSIMYYQQQK 198
YFY+ P+G +I++ +++A P E V+K+ + Y ++
Sbjct: 142 QRNYFYVKVPEG---GNITYL-------IKQALNEKFSPSCAYQTEAVKKKILSRYDPEE 191
Query: 199 SQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFMTYESNVLFALRFMIDCNIVGGNW 258
F V + ++ ++ G ++ +E+NV RF+ID + W
Sbjct: 192 HDVFKVTVSSSLSVYKISDSLVSNGCEV----------FETNVDAIRRFVIDNDFSTFGW 241
Query: 259 IEVPVGKYRKTAKTLSYCQLEFDCLYSDIISRHPEGEFSKMAPFRILSFDIECAGRKGHF 318
R T + S+ +EFDC Y D+ + ++ P+ I+SFDIEC G KG F
Sbjct: 242 YTCKSACPRITNRD-SHTDIEFDCGYYDL---EFHADRTEWPPYNIMSFDIECIGEKG-F 296
Query: 319 P--EPTHDPVIQVANLVTLQGEKQPFIRNVMTLKSCAPIVGVDVMSFETERDVLLAWRDF 376
P + D +IQ++ + G +++L +C+ + +V F +E D+L +
Sbjct: 297 PCAKNEGDLIIQISCVFWHAGALDTTRNMLLSLGTCSAVENTEVYEFPSEIDMLHGFFSL 356
Query: 377 IREVDPDVMIGYNICKFDLPYLIEK 401
IR+ + +++ GYNI FDLPYLI++
Sbjct: 357 IRDFNVEIITGYNISNFDLPYLIDR 381
>sp|P27172|DPOL_MUHVS DNA polymerase OS=Murid herpesvirus 1 (strain Smith) GN=UL54 PE=3
SV=1
Length = 1097
Score = 244 bits (622), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 171/568 (30%), Positives = 272/568 (47%), Gaps = 90/568 (15%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+K+D+ + I + E R YCL+DA L + L + L F F +AR+ +P+
Sbjct: 478 KKDDLSYKEIPVQFSAGDEGRAPGGKYCLQDAVLVRELFEMLAFHFEAAAIARLARIPLR 537
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAG--------------------------- 492
++ GQ I++ + LL + +++++PN+ G
Sbjct: 538 KVIFDGQQIRIYTCLLEECSGRDMILPNMPSLGHGAAAAIEEAAAGGEGDETSEGENSNN 597
Query: 493 SEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLV---TPE----DAR 545
S Y+GATVLE GF+ P+ DFASLYPSI+M+ NLCYSTL+ +PE D
Sbjct: 598 SRTVGYQGATVLEPECGFHHVPVCVFDFASLYPSIIMSNNLCYSTLLVEGSPEVPEKDVL 657
Query: 546 KLNLPPECVNKTPSGETFVKSNLQKGILPEILEELLAARKRAKADLKEAKDPLEKAVLDG 605
++ + +C FV+ N+ + +L E+L L RK + +K+ + +++ ++D
Sbjct: 658 RVEIGDQC-------HRFVRENVHRSLLAELLVRWLTQRKLVREAMKQCTNEMQRMIMDK 710
Query: 606 RQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDK------FTTV 659
+QLALK++ N+ YGFTG G LPC+ I++S+T GR M+ T +ED+ TV
Sbjct: 711 QQLALKVTCNAFYGFTGVAAGMLPCLPIAASITKIGRDMLLATAGHIEDRCNRPDFLRTV 770
Query: 660 GGYEHNA--------EVIYGDTDSVMVQFGVPTVEAAMK-LGREAADYISGTFIKPIKLE 710
G A ++IYGDTDSV F EA +K +G AA+ + F +P++LE
Sbjct: 771 LGLPPEAIDPEALRVKIIYGDTDSVFAAFYGIDKEALLKAVGALAANVTNALFKEPVRLE 830
Query: 711 FEKVYYPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVD 770
FEK++ ++I KKRY G + + KG++ VRR C VK +V++ LH + D
Sbjct: 831 FEKMFVSLMMICKKRYIGKVHGS----QNLSMKGVDLVRRTACGFVKAVVSDVLHMVFND 886
Query: 771 RDIP-GAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAA-------------- 815
+ G ++ + T DL N + + L + DD +K
Sbjct: 887 ETVSEGTMKLSRMTFDDLKKNGIPCEFGPVVSRLCRARDDLHLKKVPVPELTLSSVLSQE 946
Query: 816 ----------HVELAERMRKRDAATAPNVGDRVPYVII---KAAKGAKAYERSEDPIYVL 862
H+ + R+ R P VGDRV YV+ K YE +EDP +V+
Sbjct: 947 LSCYKQKNLPHLAVIRRLAARKEEL-PAVGDRVEYVLTLPDGCKKNVPNYEIAEDPRHVV 1005
Query: 863 ENNIPIDTHYYLENQISKPLLRIFEPIL 890
E + I+ Y E Q+ K + P+
Sbjct: 1006 EAKLSINAEKYYE-QVVKAVTNTLMPVF 1032
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 101/359 (28%), Positives = 150/359 (41%), Gaps = 58/359 (16%)
Query: 71 RLAKWARPPLSSGYVSQCQSIMFQQLD--IDYVIGDSNRELLPLSSG----SAAIIRIFG 124
R W R P S + F D ++ V+ DS+ ++ P + + +IR+FG
Sbjct: 77 RTRGWCRGPYS-------DDVRFHTYDQVVNLVLADSDEQISPRWNSHVVPAGNVIRMFG 129
Query: 125 VTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANRNSKVPQ----FV 180
T EG SVC V G + YFY C + D + + I + KVP+ F
Sbjct: 130 ATDEGVSVCVNVFGQKAYFY--CERMQSEDLKNTVYDIAD----------KVPEPCSPFS 177
Query: 181 RHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFMTYESN 240
I V K S Y ++ M CR I R ++ + YE
Sbjct: 178 VSISPVTKSSFYGYGLGHIPNLYRLSFNNWNM---CRKIGKRMLE------EGRKVYELG 228
Query: 241 VLFALRFMIDCNIVGGNWIEVPVGKYRKTAKTLSYCQLEFDCLYSDIISRHPEGEFSKMA 300
V RF+ID I W R A +S QLE DC +DI+ P E S
Sbjct: 229 VDPLARFLIDRKIPSFGWCLARRYSVR-AAGYVSRAQLEIDCDVADIL---PIEEQSNWP 284
Query: 301 PFRILSFDIECAGRKGHFP--EPTHDPVIQVANLVTLQGE------------KQPFI--R 344
+R LSFDIEC G FP E D +IQ++ + GE P +
Sbjct: 285 FYRCLSFDIECMSGTGAFPAAENVDDIIIQISCVCFGVGEMVHHAYDVHADLSTPAVPEN 344
Query: 345 NVMTLKSCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEKED 403
++ T+ CAPI V + +F +E ++L + F+ P+ + GYNI FD+ Y++ + +
Sbjct: 345 HLFTIGPCAPIPDVKIYTFPSEYEMLRGFFIFLSWYSPEFITGYNINGFDIKYILTRAE 403
>sp|P52367|DPOL_EHV2 DNA polymerase OS=Equine herpesvirus 2 (strain 86/87) GN=9 PE=3
SV=1
Length = 1008
Score = 239 bits (610), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 163/522 (31%), Positives = 264/522 (50%), Gaps = 54/522 (10%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+KEDV + I L R RL +YC+KD+ L LL M E+A++ +P
Sbjct: 465 KKEDVSYKEIPHLFRQGPGGRARLGLYCVKDSALVLDLLRYFMTHVEISEIAKIAKIPTR 524
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLD 519
+L+ GQ I+V S LL A ++ ++P + A +E Y+GATV++ GFY P+ +D
Sbjct: 525 RVLTDGQQIRVFSCLLDVAGREGYILPVDRHADAEG--YQGATVIDPSPGFYNTPVLVVD 582
Query: 520 FASLYPSIMMAYNLCYSTLVTPEDARKLNLPP-------ECVNKTPSGETFVKSNLQKGI 572
FASLYP+I+ A+NLCYST++ P D +L L P E FVK + +
Sbjct: 583 FASLYPTIIQAHNLCYSTMI-PGD--RLCLHPHLGPGDYETFELASGPVHFVKKHKAVSL 639
Query: 573 LPEILEELLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIE 632
L +L LA RK + +L D + +LD +QLA+K++ N+VYGFTG G LPC++
Sbjct: 640 LATLLNVWLAKRKAIRRELATVSDEAVRTILDKQQLAIKVTCNAVYGFTGVASGILPCLK 699
Query: 633 ISSSVTSYGRQMIEHTKKLVE----DKFTTVGGY------EHNAEVIYGDTDSVMVQFGV 682
I+ +VT GR+M+E++K+ +E + + G + + +VIYGDTDS+ +
Sbjct: 700 IAETVTFQGRRMLENSKRYIEGVTPEGLADILGRRVECAPDASFKVIYGDTDSLFIHCRG 759
Query: 683 PTVEAAMKLGREAADYISGT-FIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDKMD 741
E E A +++ T F+ PIKLE EK + +L++KKRY G+ T D++
Sbjct: 760 YRPEQVTGFCDELAAHMTRTLFVDPIKLEAEKTFKCLILLTKKRYIGMMTT-----DRLL 814
Query: 742 TKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGA------------------------V 777
KG++ VR+ C V+ L ++ D + A V
Sbjct: 815 MKGVDLVRKTACRFVQETTKAILDLVMGDEAVRAAAERLCAMRVEEVCARGPPVGFLKVV 874
Query: 778 QYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYE-VKAAHVELAERMRKRDAATAPNVGD 836
+ + L +NR+ + L + L++ Y+ + H+ + ++ +R+ P + D
Sbjct: 875 DILNDSYRKLRLNRVPVGQLSFSTELSRPISYYKTLTLPHLVVYHKIMQRNEEL-PQIHD 933
Query: 837 RVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQI 878
R+ YV +++ KG E +EDP Y ++NIP Y + I
Sbjct: 934 RIAYVFVQSPKGKLRSEMAEDPAYAAQHNIPPAVDLYFDKVI 975
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 143/314 (45%), Gaps = 32/314 (10%)
Query: 92 MFQQLDIDYVIGDSNRELLPLSSGSAAIIRIFGVTREGHSVCCKVHGFEPYFYISCPQGM 151
++ Q D+V +++P S ++++ G T + SVC V E YFY+ P+G+
Sbjct: 104 VYGQDRCDHVPFQFQTDIIP----SGTVLKLLGRTSDDRSVCVNVFRQELYFYVRVPEGL 159
Query: 152 GPDDISHFHQILEGRMREANR-NSKVPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALP 210
D + +++ +R N Q E KR + Y + + +
Sbjct: 160 KLDFL----------IQQCSRENFNFSQGRYRYEKTSKRVLREYCVEAREVY-------- 201
Query: 211 TMVASCRGILDRGIQLDGLGMKSFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKT- 269
+ AS +G +D + GL +E+NV A RF+ID W R+
Sbjct: 202 RVFASSQGFVD--LLAGGLTAAGCEVFETNVDAARRFIIDNGFSTFGWYSCAAAVPRQGG 259
Query: 270 AKTLSYCQLEFDCLYSDIISRHPEGEFSKMAPFRILSFDIECAGRKGHFPEPTHDP--VI 327
A S+ +LE+DC D+ ++ + +LSFDIEC G G FP + D ++
Sbjct: 260 AARDSWTELEYDCAAGDLEFHAGRADWPG---YNVLSFDIECLGENG-FPNASRDEDMIL 315
Query: 328 QVANLVTLQGEKQPFIRNVMTLKSCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIG 387
Q++ ++ G + ++ L +C I GV+V +E D+L + IR+ D + + G
Sbjct: 316 QISCVIWKAGSGEAPRSVLLNLGTCEEIEGVEVYQCPSELDLLYLFFTMIRDADVEFVTG 375
Query: 388 YNICKFDLPYLIEK 401
YNI FD PY+I++
Sbjct: 376 YNISNFDFPYVIDR 389
>sp|Q6UDK1|DPOL_PSHV1 DNA polymerase catalytic subunit OS=Psittacid herpesvirus 1 (isolate
Amazon parrot/-/97-0001/1997) GN=UL30 PE=3 SV=1
Length = 1081
Score = 223 bits (569), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 163/553 (29%), Positives = 267/553 (48%), Gaps = 74/553 (13%)
Query: 390 ICKFDLPYLIE------KEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMF 443
+C + L + E K D+ + + L E R ++ YCL+D+ L +L KL+
Sbjct: 482 LCSYKLNSVAETVLGEKKHDLSYKDLPRLFALGPEERGKIGAYCLQDSRLATKLFFKLVP 541
Query: 444 IFNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIP--------NVKQAGSEQ 495
+A++ + ++ + GQ ++V + LL++A++ +V+P + AG +
Sbjct: 542 HMELSAVAQLACITLTRAVFDGQQVRVFTCLLQRARKIGVVLPEKSDRFTFSAHAAGDQD 601
Query: 496 GT-----YEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLV-TPEDARKLNL 549
Y+GA VL+ GF+ P+ DFASLYPSI+ + NLCYST+ P L
Sbjct: 602 DGGRSVGYQGAKVLDPDVGFHVNPVMVFDFASLYPSIIQSNNLCYSTMTHNPAAIAHLEE 661
Query: 550 PPECVNKTPSGETF--VKSNLQKGILPEILEELLAARKRAKADLKEAKDPLEKAVLDGRQ 607
+ + G F V+ ++++ +L E+L + L RK +A + A EK +LD +Q
Sbjct: 662 GTDYLRVEVQGRVFFFVREHVRRSLLAELLTDWLNMRKALRAQIPLAATEDEKVLLDMQQ 721
Query: 608 LALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTV-------- 659
+A+K+ NSVYGFTG G LPC+E++++VT+ GR M+ TK+ +E+ +
Sbjct: 722 IAIKVICNSVYGFTGVMNGMLPCLEVAATVTAIGRDMLLKTKQYIEENWREYSNIRERFF 781
Query: 660 ------GGYEHNAEVIYGDTDSVMVQF-GVPTVEAAMKLGREAADYISGTFIKPIKLEFE 712
G +++ VIYGDTDSV V F GVP AA+ + F +P+KLE E
Sbjct: 782 PAMAHEGVPQYSVAVIYGDTDSVFVSFKGVPVACLVASGDAMAAEITNALFRRPVKLECE 841
Query: 713 KVYYPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRD 772
KV+ L+I+KK+Y G+ T KM +G++ VR+ NC V + L+ + D D
Sbjct: 842 KVFTKLLMIAKKKYIGVIHTG-----KMMMRGVDMVRKSNCRFVNDTAKALLNLVFYDED 896
Query: 773 IPGAVQY-------------------VKSTISDLLMNRMDLSLLVITKGLTKTGDDY-EV 812
+ A V+ + L +D+ V+T L+K Y
Sbjct: 897 VATAAASSALVDVSALPRGLSKLGARVREAHAALSSPALDVRDFVMTSELSKAPKYYASS 956
Query: 813 KAAHVELAERMRKRDAATAPNVGDRVPYVIIKAA---KGAKAYER--------SEDPIYV 861
K AH+ + + R+ P V DR+ YVII +G E+ +EDP +V
Sbjct: 957 KLAHLTVYRKKIARN-EEPPQVKDRIEYVIIAPGQRIQGDPFREKETDLVSSLAEDPNWV 1015
Query: 862 LENNIPIDTHYYL 874
+ + ++ YY
Sbjct: 1016 TAHKLRLNADYYF 1028
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 71/311 (22%), Positives = 132/311 (42%), Gaps = 44/311 (14%)
Query: 116 SAAIIRIFGVTREGHSVCCKVHGFEPYFY-----ISCPQGMG-PDDISHFHQILEGRMRE 169
S ++ + G++ G V V+G +PYFY I G+ P +++H + +R
Sbjct: 134 SGTVVTLLGMSACGKRVAVHVYGQQPYFYAKKSEIDASIGISTPGELAH---AMAASLRS 190
Query: 170 ANRNSKVPQFVRH------IEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRG 223
A S+ FV I++VQ+R I YY+ ++ + + + + C RG
Sbjct: 191 A--ASRRSTFVEATAESFVIDVVQRRDIYYYESREEEYYRVKSCSAKYISFLCDNFC-RG 247
Query: 224 IQLDGLGMKSFMTYESNVLFALRFMIDCNIVGGNWIEV-PVG---KYRKTAKTLSYCQLE 279
++ YE + RF +D + W P + R + + +E
Sbjct: 248 VK----------KYEGGIDATTRFAVDNELFTFGWYRFKPCAGAIQIRDVTRHSTSANVE 297
Query: 280 FDCLYSDIISRHPEGEFSKMAPFRILSFDIEC-AGRKGHFPEPT----HDPVIQVANLVT 334
+C ++ ++ +++LSFDIEC AG PT D VIQ++ +V+
Sbjct: 298 VNCTVENLEVIRGRADWPD---YKLLSFDIECKAGGANDLAFPTAERIEDVVIQISAVVS 354
Query: 335 LQGEKQPFIRNVMTLKSCA----PIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNI 390
++ + +L +C V V +E ++LL + F+++ P+ + GYNI
Sbjct: 355 SLLTRRVEHEILFSLGTCQLPEDIADHVKVCECGSEFELLLCFMTFLKQFSPEFVTGYNI 414
Query: 391 CKFDLPYLIEK 401
FD ++ K
Sbjct: 415 LGFDWGFMYNK 425
>sp|P09252|DPOL_VZVD DNA polymerase catalytic subunit OS=Varicella-zoster virus (strain
Dumas) GN=ORF28 PE=3 SV=1
Length = 1194
Score = 215 bits (548), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 172/646 (26%), Positives = 297/646 (45%), Gaps = 128/646 (19%)
Query: 355 IVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEKEDVHHSIISDLQN 414
++ +D+ + TE+ L +++ +D N K DLPY +D+ S
Sbjct: 501 LISLDMYAIATEKLKLSSYK-----LDSVAREALNESKRDLPY----KDIPGYYAS---- 547
Query: 415 GNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQL 474
TR + YC++D+ L +L K + +AR+ + ++ + GQ +++ + L
Sbjct: 548 -GPNTRGIIGEYCIQDSALVGKLFFKYLPHLELSAVARLARITLTKAIYDGQQVRIYTCL 606
Query: 475 LRKAKQKNLVIPN----------------------------VKQAGSEQG---TYEGATV 503
L A + ++P+ V G+ G Y+GA V
Sbjct: 607 LGLASSRGFILPDGGYPATFEYKDVIPDVGDVEEEMDEDESVSPTGTSSGRNVGYKGARV 666
Query: 504 LEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTL-VTPEDARKLNLPPECVNKTPSGET 562
+ GFY P+ LDFASLYPSI+ A+NLC++TL + E ++LN P + T G+
Sbjct: 667 FDPDTGFYIDPVVVLDFASLYPSIIQAHNLCFTTLTLNFETVKRLN-PSDYATFTVGGKR 725
Query: 563 --FVKSNLQKGILPEILEELLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGF 620
FV+SN+++ +L +L++ LA RK +A + + E +LD +Q A+K+ NSVYGF
Sbjct: 726 LFFVRSNVRESLLGVLLKDWLAMRKAIRARIPGSSSD-EAVLLDKQQAAIKVVCNSVYGF 784
Query: 621 TGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGY---------------EHN 665
TG G LPC+ ++++VT+ GRQM+ T+ + + + + +
Sbjct: 785 TGVAQGFLPCLYVAATVTTIGRQMLLSTRDYIHNNWAAFERFITAFPDIESSVLSQKAYE 844
Query: 666 AEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYIS-GTFIKPIKLEFEKVYYPYLLISKK 724
+VIYGDTDSV ++F +VE K+G + A IS F PIKLE EK + LLI+KK
Sbjct: 845 VKVIYGDTDSVFIRFKGVSVEGIAKIGEKMAHIISTALFCPPIKLECEKTFIKLLLITKK 904
Query: 725 RYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVD-------------- 770
+Y G+ + K+ KG++ VR++NC + + + + +L D
Sbjct: 905 KYIGVIYGG-----KVLMKGVDLVRKNNCQFINDYARKLVELLLYDDTVSRAAAEASCVS 959
Query: 771 ------RDIPGAVQYVKSTISD----LLMNRMDLSLLVITKGLTKTGDDY-EVKAAHVEL 819
R +P + I+D + ++D++ V+T L++ Y + AH+ +
Sbjct: 960 IAEWNRRAMPSGMAGFGRIIADAHRQITSPKLDINKFVMTAELSRPPSAYINRRLAHLTV 1019
Query: 820 AERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERS------------------------ 855
++ R PNV +R+PYVI+ +A +S
Sbjct: 1020 YYKLVMRQGQI-PNVRERIPYVIVAPTDEVEADAKSVALLRGDPLQNTAGKRCGEAKRKL 1078
Query: 856 ------EDPIYVLENNIPIDTHYYLENQISKPLLRIFEPILKNASK 895
EDPI+V + + ++ YY + I + F+ + N +K
Sbjct: 1079 IISDLAEDPIHVTSHGLSLNIDYYFSHLIGTASV-TFKALFGNDTK 1123
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/341 (23%), Positives = 138/341 (40%), Gaps = 61/341 (17%)
Query: 117 AAIIRIFGVTREGHSVCCKVHGFEPYFYI-------SCPQGMGPDDISHFHQILEGRMRE 169
+I + G++R G V V+G YFYI +C G + + L M
Sbjct: 144 GTVITLLGMSRCGKRVAVHVYGICQYFYINKAEVDTACGIRSGSELSVLLAECLRSSMIT 203
Query: 170 ANR---------------NSKVPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVA 214
N S P+ R +E++++ + YY +QP V P+
Sbjct: 204 QNDATLNGDKNAFHGTSFKSASPESFR-VEVIERTDVYYYD---TQPCAFYRVYSPSSKF 259
Query: 215 SCRGILDRGIQLDGLGMKSFMTYESNVLFALRFMIDC-NIVGGNWIEVPVG------KYR 267
+ D YE V RF++D V W ++ G + R
Sbjct: 260 T-------NYLCDNF-HPELKKYEGRVDATTRFLMDNPGFVSFGWYQLKPGVDGERVRVR 311
Query: 268 KTAKTLSYCQLEFDCLYSDIISRHPEGEFSKMAPFRILSFDIECAGRKGH---FPEPTH- 323
++ L+ +E DC+ SD + P + +++L FDIEC + FP+ TH
Sbjct: 312 PASRQLTLSDVEIDCM-SDNLQAIPNDD--SWPDYKLLCFDIECKSGGSNELAFPDATHL 368
Query: 324 -DPVIQVANLVTLQGEKQPFIRNVMTLKSC------------APIVGVDVMSFETERDVL 370
D VIQ++ L+ + + +L SC A + V+ F++E ++L
Sbjct: 369 EDLVIQISCLLYSIPRQSLEHILLFSLGSCDLPQRYVQEMKDAGLPEPTVLEFDSEFELL 428
Query: 371 LAWRDFIREVDPDVMIGYNICKFDLPYLIEKEDVHHSIISD 411
+A+ +++ P+ GYNI FD +++EK + +S+ D
Sbjct: 429 IAFMTLVKQYAPEFATGYNIVNFDWAFIMEKLNSIYSLKLD 469
>sp|Q4JQU7|DPOL_VZVO DNA polymerase catalytic subunit OS=Varicella-zoster virus (strain
Oka vaccine) GN=ORF28 PE=3 SV=1
Length = 1194
Score = 214 bits (545), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 172/646 (26%), Positives = 296/646 (45%), Gaps = 128/646 (19%)
Query: 355 IVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEKEDVHHSIISDLQN 414
++ +D+ + TE+ L +++ +D N K DLPY +D+ S
Sbjct: 501 LISLDMYAIATEKLKLSSYK-----LDSVAREALNESKRDLPY----KDIPGYYAS---- 547
Query: 415 GNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQL 474
TR + YC++D+ L +L K + +AR+ + ++ + GQ +++ + L
Sbjct: 548 -GPNTRGIIGEYCIQDSALVGKLFFKYLPHLELSAVARLARITLTKAIYDGQQVRIYTCL 606
Query: 475 LRKAKQKNLVIPN----------------------------VKQAGSEQG---TYEGATV 503
L A + ++P+ V G+ G Y+GA V
Sbjct: 607 LGLASSRGFILPDGGYPATFEYKDVIPDVGDVEEEMDEDESVSPTGTSSGRNVGYKGARV 666
Query: 504 LEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTL-VTPEDARKLNLPPECVNKTPSGET 562
+ GFY P+ LDFASLYPSI+ A+NLC++TL + E ++LN P + T G+
Sbjct: 667 FDPDTGFYIDPVVVLDFASLYPSIIQAHNLCFTTLTLNFETVKRLN-PSDYATFTVGGKR 725
Query: 563 --FVKSNLQKGILPEILEELLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGF 620
FV+SN+++ +L +L++ LA RK +A + + E +LD +Q A+K+ NSVYGF
Sbjct: 726 LFFVRSNVRESLLGVLLKDWLAMRKAIRARIPGSSSD-EAVLLDKQQAAIKVVCNSVYGF 784
Query: 621 TGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGY---------------EHN 665
TG G LPC+ ++++VT+ GRQM+ T+ + + + + +
Sbjct: 785 TGVAQGFLPCLYVAATVTTIGRQMLLSTRDYIHNNWAAFERFITAFPDIESSVLSQKAYE 844
Query: 666 AEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYIS-GTFIKPIKLEFEKVYYPYLLISKK 724
+VIYGDTDSV ++F VE K+G + A IS F PIKLE EK + LLI+KK
Sbjct: 845 VKVIYGDTDSVFIRFKGVGVEGIAKIGEKMAHIISTALFCPPIKLECEKTFIKLLLITKK 904
Query: 725 RYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVD-------------- 770
+Y G+ + K+ KG++ VR++NC + + + + +L D
Sbjct: 905 KYIGVIYGG-----KVLMKGVDLVRKNNCQFINDYARKLVELLLYDDTVSRAAAEASCVS 959
Query: 771 ------RDIPGAVQYVKSTISD----LLMNRMDLSLLVITKGLTKTGDDY-EVKAAHVEL 819
R +P + I+D + ++D++ V+T L++ Y + AH+ +
Sbjct: 960 IAEWNRRAMPSGMAGFGRIIADAHRQITSPKLDINKFVMTAELSRPPSAYINRRLAHLTV 1019
Query: 820 AERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERS------------------------ 855
++ R PNV +R+PYVI+ +A +S
Sbjct: 1020 YYKLVMRQGQI-PNVRERIPYVIVAPTDEVEADAKSVALLRGDPLQNTAGKRCGEAKRKL 1078
Query: 856 ------EDPIYVLENNIPIDTHYYLENQISKPLLRIFEPILKNASK 895
EDPI+V + + ++ YY + I + F+ + N +K
Sbjct: 1079 IISDLAEDPIHVTSHGLSLNIDYYFSHLIGTASV-TFKALFGNDTK 1123
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/341 (23%), Positives = 142/341 (41%), Gaps = 61/341 (17%)
Query: 117 AAIIRIFGVTREGHSVCCKVHGFEPYFYISCPQ---GMGPDDISHFHQILEGRMREA--- 170
+I + G++R G V V+G YFYI+ + G S +L +R +
Sbjct: 144 GTVITLLGMSRCGKRVAVHVYGICQYFYINKAEVDTACGIRSCSELSVLLAECLRSSMIT 203
Query: 171 --------NRN--------SKVPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVA 214
++N S P+ R +E++++ + YY +QP V P+
Sbjct: 204 QNDATLNGDKNAFHGTSFKSASPESFR-VEVIERTDVYYYD---TQPCAFYRVYSPSSKF 259
Query: 215 SCRGILDRGIQLDGLGMKSFMTYESNVLFALRFMIDC-NIVGGNWIEVPVG------KYR 267
+ D YE V RF++D V W ++ G + R
Sbjct: 260 T-------NYLCDNF-HPELKKYEGRVDATTRFLMDNPGFVSFGWYQLKPGVDGERVRVR 311
Query: 268 KTAKTLSYCQLEFDCLYSDIISRHPEGEFSKMAPFRILSFDIECAGRKGH---FPEPTH- 323
++ L+ +E DC+ SD + P + +++L FDIEC + FP+ TH
Sbjct: 312 PASRQLTLSDVEIDCM-SDNLQAIPNDD--SWPDYKLLCFDIECKSGGSNELAFPDATHL 368
Query: 324 -DPVIQVANLVTLQGEKQPFIRNVMTLKSC------------APIVGVDVMSFETERDVL 370
D VIQ++ L+ + + +L SC A + V+ F++E ++L
Sbjct: 369 EDLVIQISCLLYSIPRQSLEHILLFSLGSCDLPQRYVQEMKDAGLPEPTVLEFDSEFELL 428
Query: 371 LAWRDFIREVDPDVMIGYNICKFDLPYLIEKEDVHHSIISD 411
+A+ +++ P+ GYNI FD +++EK + +S+ D
Sbjct: 429 IAFMTLVKQYAPEFATGYNIVNFDWAFIMEKLNSIYSLKLD 469
>sp|Q6SW77|DPOL_HCMVM DNA polymerase catalytic subunit OS=Human cytomegalovirus (strain
Merlin) GN=UL54 PE=3 SV=1
Length = 1242
Score = 214 bits (544), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 139/432 (32%), Positives = 224/432 (51%), Gaps = 75/432 (17%)
Query: 487 NVKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLVTPEDARK 546
N G+ +Y+GATV E G+Y P+A DFASLYPSI+MA+NLCYSTL+ P
Sbjct: 685 NHGAGGTAAVSYQGATVFEPEVGYYNDPVAVFDFASLYPSIIMAHNLCYSTLLVPGGEYP 744
Query: 547 LNLPPECVNKT-PSGET--FVKSNLQKGILPEILEELLAARKRAKADLKEAKDPLEKAVL 603
++ P + + T +G T FV+++++ +L E+L + ++ R+ + ++E +DP+ + +L
Sbjct: 745 VD-PADVYSVTLENGVTHRFVRASVRVSVLSELLNKWVSQRRAVRECMRECQDPVRRMLL 803
Query: 604 DGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKF------- 656
D Q+ALK++ N+ YGFTG G +PC+ I++S+T GR M+E T + ++D F
Sbjct: 804 DKEQMALKVTCNAFYGFTGVVNGMMPCLPIAASITRIGRDMLERTARFIKDNFSEPCFLH 863
Query: 657 ----------------------------TTVGGYEH---NAEVIYGDTDSVMVQFGVPTV 685
T+ GG A VIYGDTDSV V+F T
Sbjct: 864 NFFNQEDYVVGTREGDSEESSTLPEGLETSSGGLNERRVEARVIYGDTDSVFVRFRGLTP 923
Query: 686 EAAMKLGREAADYISGT-FIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDKMDTKG 744
+A + G A Y++ F++P+KLEFEKV+ ++I KKRY G E + KG
Sbjct: 924 QALVARGPSLAHYVTACLFVEPVKLEFEKVFVSLMMICKKRYIG----KVEGASGLSMKG 979
Query: 745 IETVRRDNCLLVKNLVTECLHKILVDRDIP-GAVQYVKSTI------------------- 784
++ VR+ C VK + + L + DR++ AV+ + ++
Sbjct: 980 VDLVRKTACEFVKGVTRDVLSLLFEDREVSEAAVRLSRLSLDEVKKYGVPRGFWRILRRL 1039
Query: 785 ----SDLLMNRMDLSLLVITKGLTKTGDDY-EVKAAHVELAERMRKRDAATAPNVGDRVP 839
DL ++R+ + LV++ L+K Y + H+ + +R+ R + P+VGDRV
Sbjct: 1040 VQARDDLYLHRVRVEDLVLSSVLSKDISLYRQSNLPHIAVIKRLAAR-SEELPSVGDRVF 1098
Query: 840 YVIIKAAKGAKA 851
YV+ A G +A
Sbjct: 1099 YVL--TAPGVRA 1108
Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 129/316 (40%), Gaps = 55/316 (17%)
Query: 116 SAAIIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANRNSK 175
S ++R FG T G+S+C V G YFY D +++ A+
Sbjct: 130 SGNVLRFFGATEHGYSICVNVFGQRSYFYCEY------SDTDRLREVI------ASVGEL 177
Query: 176 VPQ----FVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGM 231
VP+ + + K SI Y + + ++ TM R I + ++
Sbjct: 178 VPEPRTPYAVSVTPATKTSIYGYGTRPVPDLQCVSISNWTMA---RKIGEYLLE------ 228
Query: 232 KSFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAKTLSYCQLEFDCLYSDIISRH 291
+ F YE V R +ID I W V +R+ + S C +E DC SD+++
Sbjct: 229 QGFPVYEVRVDPLTRLVIDRRITTFGWCSVNRYDWRQQGRA-STCDIEVDCDVSDLVAVP 287
Query: 292 PEGEFSKMAPFRILSFDIECAGRKGHFP--EPTHDPVIQVANLVTLQGEKQPFIRNV--- 346
+ + + +R LSFDIEC +G FP E + D VIQ++ + G + +
Sbjct: 288 DDSSWPR---YRCLSFDIECMSGEGGFPCAEKSDDIVIQISCVCYETGGNTAVDQGIPNG 344
Query: 347 --------------------MTLKSCAPI-VGVDVMSFETERDVLLAWRDFIREVDPDVM 385
T+ +C + VDV F +E ++LL + F + P +
Sbjct: 345 NDGRGCTSEGVIFGHSGLHLFTIGTCGQVGPDVDVYEFPSEYELLLGFMLFFQRYAPAFV 404
Query: 386 IGYNICKFDLPYLIEK 401
GYNI FDL Y++ +
Sbjct: 405 TGYNINSFDLKYILTR 420
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 51/93 (54%)
Query: 401 KEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPISF 460
K+D+ + I NAE R ++ YCL+DA L + L + + F + +AR+ +P+
Sbjct: 513 KDDLSYKDIPRCFVANAEGRAQVGRYCLQDAVLVRDLFNTINFHYEAGAIARLAKIPLRR 572
Query: 461 LLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGS 493
++ GQ I++ + LL + ++ ++PN G+
Sbjct: 573 VIFDGQQIRIYTSLLDECACRDFILPNHYSKGT 605
>sp|P08546|DPOL_HCMVA DNA polymerase OS=Human cytomegalovirus (strain AD169) GN=UL54 PE=1
SV=2
Length = 1242
Score = 213 bits (542), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 136/423 (32%), Positives = 222/423 (52%), Gaps = 73/423 (17%)
Query: 487 NVKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLVTPEDARK 546
N G+ +Y+GATV E G+Y P+A DFASLYPSI+MA+NLCYSTL+ P
Sbjct: 685 NHGAGGTAAVSYQGATVFEPEVGYYNDPVAVFDFASLYPSIIMAHNLCYSTLLVPGGEYP 744
Query: 547 LNLPPECVNKT-PSGET--FVKSNLQKGILPEILEELLAARKRAKADLKEAKDPLEKAVL 603
++ P + + T +G T FV+++++ +L E+L + ++ R+ + ++E +DP+ + +L
Sbjct: 745 VD-PADVYSVTLENGVTHRFVRASVRVSVLSELLNKWVSQRRAVRECMRECQDPVRRMLL 803
Query: 604 DGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFT------ 657
D Q+ALK++ N+ YGFTG G +PC+ I++S+T GR M+E T + ++D F+
Sbjct: 804 DKEQMALKVTCNAFYGFTGVVNGMMPCLPIAASITRIGRDMLERTARFIKDNFSEPCFLH 863
Query: 658 --------TVGGYEHNAE------------------------VIYGDTDSVMVQFGVPTV 685
VG E ++E VIYGDTDSV V+F T
Sbjct: 864 NFFNQEDYVVGTREGDSEESSALPEGLETSSGGSNERRVEARVIYGDTDSVFVRFRGLTP 923
Query: 686 EAAMKLGREAADYISGT-FIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDKMDTKG 744
+A + G A Y++ F++P+KLEFEKV+ ++I KKRY G E + KG
Sbjct: 924 QALVARGPSLAHYVTACLFVEPVKLEFEKVFVSLMMICKKRYIG----KVEGASGLSMKG 979
Query: 745 IETVRRDNCLLVKNLVTECLHKILVDRDIP-GAVQYVKSTI------------------- 784
++ VR+ C VK + + L + DR++ AV+ + ++
Sbjct: 980 VDLVRKTACEFVKGVTRDVLSLLFEDREVSEAAVRLSRLSLDEVKKYGVPRGFWRILRRL 1039
Query: 785 ----SDLLMNRMDLSLLVITKGLTKTGDDY-EVKAAHVELAERMRKRDAATAPNVGDRVP 839
DL ++R+ + LV++ L+K Y + H+ + +R+ R + P+VGDRV
Sbjct: 1040 VQARDDLYLHRVRVEDLVLSSVLSKDISLYRQSNLPHIAVIKRLAAR-SEELPSVGDRVF 1098
Query: 840 YVI 842
YV+
Sbjct: 1099 YVL 1101
Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 129/316 (40%), Gaps = 55/316 (17%)
Query: 116 SAAIIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANRNSK 175
S ++R FG T G+S+C V G YFY D +++ A+
Sbjct: 130 SGNVLRFFGATEHGYSICVNVFGQRSYFYCEY------SDTDRLREVI------ASVGEL 177
Query: 176 VPQ----FVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGM 231
VP+ + + K SI Y + + ++ TM R I + ++
Sbjct: 178 VPEPRTPYAVSVTPATKTSIYGYGTRPVPDLQCVSISNWTMA---RKIGEYLLE------ 228
Query: 232 KSFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAKTLSYCQLEFDCLYSDIISRH 291
+ F YE V R +ID I W V +R+ + S C +E DC SD+++
Sbjct: 229 QGFPVYEVRVDPLTRLVIDRRITTFGWCSVNRYDWRQQGRA-STCDIEVDCDVSDLVAVP 287
Query: 292 PEGEFSKMAPFRILSFDIECAGRKGHFP--EPTHDPVIQVANLVTLQGEKQPFIRNV--- 346
+ + + +R LSFDIEC +G FP E + D VIQ++ + G + +
Sbjct: 288 DDSSWPR---YRCLSFDIECMSGEGGFPCAEKSDDIVIQISCVCYETGGNTAVDQGIPNG 344
Query: 347 --------------------MTLKSCAPI-VGVDVMSFETERDVLLAWRDFIREVDPDVM 385
T+ +C + VDV F +E ++LL + F + P +
Sbjct: 345 NDGRGCTSEGVIFGHSGLHLFTIGTCGQVGPDVDVYEFPSEYELLLGFMLFFQRYAPAFV 404
Query: 386 IGYNICKFDLPYLIEK 401
GYNI FDL Y++ +
Sbjct: 405 TGYNINSFDLKYILTR 420
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 51/93 (54%)
Query: 401 KEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPISF 460
K+D+ + I NAE R ++ YCL+DA L + L + + F + +AR+ +P+
Sbjct: 513 KDDLSYKDIPRCFVANAEGRAQVGRYCLQDAVLVRDLFNTINFHYEAGAIARLAKIPLRR 572
Query: 461 LLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGS 493
++ GQ I++ + LL + ++ ++PN G+
Sbjct: 573 VIFDGQQIRIYTSLLDECACRDFILPNHYSKGT 605
>sp|Q6S6P1|DPOL_EHV1V DNA polymerase catalytic subunit OS=Equine herpesvirus 1 (strain
V592) GN=30 PE=3 SV=1
Length = 1220
Score = 209 bits (532), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 176/649 (27%), Positives = 293/649 (45%), Gaps = 148/649 (22%)
Query: 355 IVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEKEDVHHSIISDLQN 414
++ +D+ S TE+ L +++ + V DV+ + K DLPY KE I
Sbjct: 515 LISLDMYSVATEKLKLPSYK--LDAVVGDVLGEH---KIDLPY---KE------IPSYYA 560
Query: 415 GNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQL 474
G + R + YC++D+ L +L K + +A++ + ++ ++ GQ I+V + L
Sbjct: 561 GGPDRRGVIGEYCIQDSRLVGKLFFKYLPHLELSAVAKLARITLTRVIFDGQQIRVYTCL 620
Query: 475 LRKAKQKNLVIPNVKQ-------------------------------------------A 491
L+ A+++N ++P+ ++ A
Sbjct: 621 LKLARERNFILPDNRRRFDSQADAASETSELAMDSQSHAFDSTDEPDGVDGTPDAAGSGA 680
Query: 492 GSEQGT----------YEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLVTP 541
SE G Y+GA VL+ +GF+ P+ DFASLYPSI+ A+NLC++TL
Sbjct: 681 TSENGGGKPGVGRAVGYQGAKVLDPVSGFHVDPVVVFDFASLYPSIIQAHNLCFTTLALD 740
Query: 542 EDARKLNLPPECVNKTPSGET---FVKSNLQKGILPEILEELLAARKRAKADLKEAKDPL 598
E P + G+ FV +++++ +L +L + LA RK +A + + P
Sbjct: 741 EVDLAGLQPSVNYSTFEVGDQKLFFVHAHIRESLLGILLRDWLAMRKAVRARIPTST-PE 799
Query: 599 EKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMI----------EHT 648
E +LD +Q A+K+ NSVYGFTG G LPC+ I+++VT+ GR M+ T
Sbjct: 800 EAVLLDKQQSAIKVICNSVYGFTGVANGLLPCLRIAATVTTIGRDMLLKTRDYVHSRWAT 859
Query: 649 KKLVEDKFTTVGGYE----HNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGT-F 703
++L+ED F G+ ++ VIYGDTDSV ++F T E +LG + IS F
Sbjct: 860 RELLEDNFPGAIGFRNHKPYSVRVIYGDTDSVFIKFVGLTYEGVSELGDAMSRQISADLF 919
Query: 704 IKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTEC 763
PIKLE EK + LLI+KK+Y G+ KM KG++ VR++NC +
Sbjct: 920 RAPIKLECEKTFQRLLLITKKKYIGVI-----NGGKMLMKGVDLVRKNNCSFINLYARHL 974
Query: 764 LHKILVDRDIPGAVQYVKSTISDLLMNR------------------------MDLSLLVI 799
+ +L D D+ A V + R +D+ V+
Sbjct: 975 VDLLLYDEDVATAAAKVTDVPPAEWVGRPLPSGFDKFGRVLVEAYNRITAPNLDVREFVM 1034
Query: 800 TKGLTKTGDDYEVK-AAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAK-------- 850
T L+++ + Y K H+ + ++ R+ P+V +R+PYVI+ + A+
Sbjct: 1035 TAELSRSPESYTNKRLPHLTVYFKLAMRNEEL-PSVKERIPYVIVAQTEAAEREAGVVNS 1093
Query: 851 -----------------------AYERSEDPIYVLENNIPIDTHYYLEN 876
+ +EDP YV EN++P++T YY +
Sbjct: 1094 MRGTAQNPVVTKTARPQPKRKLLVSDLAEDPTYVSENDVPLNTDYYFSH 1142
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 84/189 (44%), Gaps = 27/189 (14%)
Query: 237 YESNVLFALRFMIDC-NIVGGNWIEVPVGKY------RKTAKTLSYCQLEFDCLYSDIIS 289
+E +V R ++D N W + G + R + ++ +E +C ++
Sbjct: 288 FEGSVDVTTRLLLDNENFTSFGWYRLRPGTHGERVQLRPVERHVTSSDVEINCTPDNL-- 345
Query: 290 RHPEGEFSKMAPFRILSFDIECAGRKGH---FPEPTH--DPVIQVANLVTLQGEKQPFIR 344
P + + ++++ FDIEC G+ FP T+ D VIQ++ L+ +
Sbjct: 346 -EPIPDEAAWPDYKLMCFDIECKAGTGNEMAFPVATNQEDLVIQISCLLYSLATQNHEHT 404
Query: 345 NVMTLKSC-----APIVGVD-------VMSFETERDVLLAWRDFIREVDPDVMIGYNICK 392
+ +L SC V V+ F++E ++L+A+ F+++ P+ GYNI
Sbjct: 405 LLFSLGSCDISEEYSFACVQRGEPRPTVLEFDSEYELLVAFLTFLKQYSPEFATGYNIVN 464
Query: 393 FDLPYLIEK 401
FD Y++ K
Sbjct: 465 FDWAYIVNK 473
>sp|P28858|DPOL_EHV1B DNA polymerase catalytic subunit OS=Equine herpesvirus 1 (strain
Ab4p) GN=30 PE=3 SV=1
Length = 1220
Score = 209 bits (531), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 176/649 (27%), Positives = 293/649 (45%), Gaps = 148/649 (22%)
Query: 355 IVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEKEDVHHSIISDLQN 414
++ +D+ S TE+ L +++ + V DV+ + K DLPY KE I
Sbjct: 515 LISLDMYSVATEKLKLPSYK--LDAVVGDVLGEH---KIDLPY---KE------IPSYYA 560
Query: 415 GNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQL 474
G + R + YC++D+ L +L K + +A++ + ++ ++ GQ I+V + L
Sbjct: 561 GGPDRRGVIGEYCIQDSRLVGKLFFKYLPHLELSAVAKLARITLTRVIFDGQQIRVYTCL 620
Query: 475 LRKAKQKNLVIPNVKQ-------------------------------------------A 491
L+ A+++N ++P+ ++ A
Sbjct: 621 LKLARERNFILPDNRRRFDSQADAASETSELAMDSQSHAFDSTDEPDGVDGTPDAAGSGA 680
Query: 492 GSEQGT----------YEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLVTP 541
SE G Y+GA VL+ +GF+ P+ DFASLYPSI+ A+NLC++TL
Sbjct: 681 TSENGGGKPGVGRAVGYQGAKVLDPVSGFHVDPVVVFDFASLYPSIIQAHNLCFTTLALD 740
Query: 542 EDARKLNLPPECVNKTPSGET---FVKSNLQKGILPEILEELLAARKRAKADLKEAKDPL 598
E P + G+ FV +++++ +L +L + LA RK +A + + P
Sbjct: 741 EVDLAGLQPSVDYSTFEVGDQKLFFVHAHIRESLLGILLRDWLAMRKAVRARIPTST-PE 799
Query: 599 EKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMI----------EHT 648
E +LD +Q A+K+ NSVYGFTG G LPC+ I+++VT+ GR M+ T
Sbjct: 800 EAVLLDKQQSAIKVICNSVYGFTGVANGLLPCLRIAATVTTIGRDMLLKTRDYVHSRWAT 859
Query: 649 KKLVEDKFTTVGGYE----HNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGT-F 703
++L+ED F G+ ++ VIYGDTDSV ++F T E +LG + IS F
Sbjct: 860 RELLEDNFPGAIGFRNHKPYSVRVIYGDTDSVFIKFVGLTYEGVSELGDAMSRQISADLF 919
Query: 704 IKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTEC 763
PIKLE EK + LLI+KK+Y G+ KM KG++ VR++NC +
Sbjct: 920 RAPIKLECEKTFQRLLLITKKKYIGVI-----NGGKMLMKGVDLVRKNNCSFINLYARHL 974
Query: 764 LHKILVDRDIPGAVQYVKSTISDLLMNR------------------------MDLSLLVI 799
+ +L D D+ A V + R +D+ V+
Sbjct: 975 VDLLLYDEDVATAAAEVTDVPPAEWVGRPLPSGFDKFGRVLVEAYNRITAPNLDVREFVM 1034
Query: 800 TKGLTKTGDDYEVK-AAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAK-------- 850
T L+++ + Y K H+ + ++ R+ P+V +R+PYVI+ + A+
Sbjct: 1035 TAELSRSPESYTNKRLPHLTVYFKLAMRNEEL-PSVKERIPYVIVAQTEAAEREAGVVNS 1093
Query: 851 -----------------------AYERSEDPIYVLENNIPIDTHYYLEN 876
+ +EDP YV EN++P++T YY +
Sbjct: 1094 MRGTAQNPVVTKTARPQPKRKLLVSDLAEDPTYVSENDVPLNTDYYFSH 1142
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 84/189 (44%), Gaps = 27/189 (14%)
Query: 237 YESNVLFALRFMIDC-NIVGGNWIEVPVGKY------RKTAKTLSYCQLEFDCLYSDIIS 289
+E +V R ++D N W + G + R + ++ +E +C ++
Sbjct: 288 FEGSVDVTTRLLLDNENFTSFGWYRLRPGTHGERVQLRPVERHVTSSDVEINCTPDNL-- 345
Query: 290 RHPEGEFSKMAPFRILSFDIECAGRKGH---FPEPTH--DPVIQVANLVTLQGEKQPFIR 344
P + + ++++ FDIEC G+ FP T+ D VIQ++ L+ +
Sbjct: 346 -EPIPDEAAWPDYKLMCFDIECKAGTGNEMAFPVATNQEDLVIQISCLLYSLATQNHEHT 404
Query: 345 NVMTLKSC-----APIVGVD-------VMSFETERDVLLAWRDFIREVDPDVMIGYNICK 392
+ +L SC V V+ F++E ++L+A+ F+++ P+ GYNI
Sbjct: 405 LLFSLGSCDISEEYSFACVQRGEPRPTVLEFDSEYELLVAFLTFLKQYSPEFATGYNIVN 464
Query: 393 FDLPYLIEK 401
FD Y++ K
Sbjct: 465 FDWAYIVNK 473
>sp|Q85428|DPOL_RCMVM DNA polymerase OS=Rat cytomegalovirus (strain Maastricht) GN=UL54
PE=3 SV=2
Length = 1173
Score = 207 bits (526), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 147/452 (32%), Positives = 225/452 (49%), Gaps = 66/452 (14%)
Query: 492 GSEQGT--YEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLVTPEDARKLNL 549
GS G Y+GATVL G++ PI DFASLYPSI+M+ NLCYSTL+ +
Sbjct: 621 GSASGNVGYQGATVLAPECGYHHNPILVFDFASLYPSIIMSNNLCYSTLLVDGSP---PV 677
Query: 550 PPECVNKTPSGET----FVKSNLQKGILPEILEELLAARKRAKADLKEAKDPLEKAVLDG 605
P E V + GE FV+ ++++ +L E+L L RK + +K D ++ +D
Sbjct: 678 PDEDVLEVVVGEATRYRFVREHVRRSLLAELLVRWLKQRKLVRDAMKACGDEKQRMFMDK 737
Query: 606 RQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVG----- 660
+QLALK++ N+ YGFTG LPC+ I++S+T GR M+ T +E V
Sbjct: 738 QQLALKVTCNAFYGFTGVAAPMLPCLPIAASITKIGRDMLLATSAYMERHCNDVEFLVSE 797
Query: 661 -GYEHNA--------EVIYGDTDSVMVQFGVPTVEAAMKL-GREAADYISGTFIKPIKLE 710
G A +++YGDTDSV V F E +K+ G+ AA F P++LE
Sbjct: 798 VGVPREAVDRDALRVKIVYGDTDSVFVGFRGIGREVLVKVAGKLAAAVTRDLFRDPVRLE 857
Query: 711 FEKVYYPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVD 770
FEK++ ++I KKRY G + +K+ KG++ VRR C V+++V+E + I D
Sbjct: 858 FEKMFVSLMMICKKRYIGKVYGE----NKLCMKGVDLVRRHACAFVRSIVSEVVDVIFHD 913
Query: 771 RDIP-GAVQYVKSTI-----------------------SDLLMNRMDLSLLVITKGLTKT 806
+ GA++ + + DL ++R+ ++ LV++ L++
Sbjct: 914 EAVSEGAMRLSEMSFEELRRQGVPVGFFPVIRRLCDARDDLFLDRVPVAQLVLSSVLSQD 973
Query: 807 GDDYEVK-----AAHVELAERMRKRDAATAPNVGDRVPYVII---KAAKGAKAYERSEDP 858
Y+ K A + L ER P VGDR+ YV+ ++ K A YE +EDP
Sbjct: 974 ASRYKQKNLPHLAVYRSLVER-----GEELPGVGDRIEYVLTCPDESKKRAPNYEVAEDP 1028
Query: 859 IYVLENNIPIDTHYYLENQISKPLLRIFEPIL 890
+V E IPI Y +QI K + + P+
Sbjct: 1029 AHVREAKIPIHAEKYF-DQIVKAVTNVLLPVF 1059
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 129/296 (43%), Gaps = 31/296 (10%)
Query: 114 SGSAAIIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANRN 173
S + +IR+FG T G VC V G + YFY C G D H + + R
Sbjct: 119 SPAGNVIRLFGATALGTPVCVNVFGQKSYFY--CENRPGEDLRDVIHDLADAS-RSPGPL 175
Query: 174 SKVPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKS 233
S P R +V R + P L V +A G L + +
Sbjct: 176 SASPS--RRAPLVAVR-----LRPGDIPHLYRVSFNNWSMARKVGAL--------MVQEG 220
Query: 234 FMTYESNVLFALRFMIDCNIVGGNWIEVPVGKY-RKTAKTLSYCQLEFDCLYSDIISRHP 292
YE V RF+ID I W+ V G++ R+ S +E DC D+++ P
Sbjct: 221 RRAYEIGVDPLARFLIDRKIPSFGWLRV--GRFSRRCNGQTSTAVIELDCQVGDVVAGQP 278
Query: 293 EGEFSKMAPFRILSFDIECAGRKGHFP--EPTHDPVIQVANLVTLQG----EKQPFI-RN 345
P+R LSFDIEC G FP E D VIQ++ + + G + F ++
Sbjct: 279 ---LPNWPPYRCLSFDIECMSASGAFPQAEVLDDIVIQISCVCFVVGGSGAHRFTFAEKH 335
Query: 346 VMTLKSCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYNICKFDLPYLIEK 401
+ T+ SCAP+ V V +F +E ++LL + F PD + GYNI FD+ YL+ +
Sbjct: 336 LFTIGSCAPVEDVWVYTFPSEYEMLLGFFIFFNRFSPDFLTGYNINGFDIKYLLHR 391
>sp|O93746|DPOL2_AERPE DNA polymerase 2 OS=Aeropyrum pernix (strain ATCC 700893 / DSM
11879 / JCM 9820 / NBRC 100138 / K1) GN=polB PE=3 SV=3
Length = 803
Score = 203 bits (517), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 225/854 (26%), Positives = 366/854 (42%), Gaps = 132/854 (15%)
Query: 86 SQCQSIMFQQLDIDYVIGDSNRELLPLSSGSAAIIRIFGVTREGHSVCCKVHGFEPYFYI 145
S + FQ LD+ Y + GS +I ++G +G V F PYFY+
Sbjct: 4 SDATLLSFQLLDVSYEM-----------RGSTPVIILWGRGADGSRVVVFYGEFRPYFYV 52
Query: 146 SCPQGMGPDDISHFHQILEGRMREANRNSKVPQFVRHIEMVQKRSIMYYQQQKSQPFLKI 205
+G D ++ R S+ + +E V++R I + LK+
Sbjct: 53 LPDGSVGLDQLAAM----------IRRLSRPSSPILSVERVRRRFI-----GREVEALKV 97
Query: 206 VVALPTMVASCRGILDR-GIQLDGLGMKSFMTYESNVLFALRFMIDCNIVGGNWIEVPVG 264
+P V R + R G G++ + E+++ FALRF+ID N+ W V
Sbjct: 98 TTLVPASVREYREAVRRLG------GVRDVL--EADIPFALRFIIDFNLYPMRWY---VA 146
Query: 265 KYRKTAKTLSYCQLEFDCLYSDIISRHPEGEFSKMAPFRILSFDIECAGRKGHFPEPTHD 324
+ R+ A Y L DI + + R+++FDIE K P+P D
Sbjct: 147 EVREVAVPHGYSVDRAYTLSGDIREDETRIQEDPLKGLRVMAFDIEVYS-KMRTPDPKKD 205
Query: 325 PVIQVA------NLVTLQGE----KQPFIRNVMTLKSCAP--IVGVDVMSFE----TERD 368
PVI + + L+ E K+ V +KS P IVG + F+ ER
Sbjct: 206 PVIMIGLQQAGGEIEILEAEDRSDKKVIAGFVERVKSIDPDVIVGYNQNRFDWPYLVERA 265
Query: 369 VLLAWRDFI--REVDPDVMI--GYNIC-KFDLPYLIEKEDVHHSIISDLQN--------- 414
+L + + R V+P + Y++ + ++ L E++H + L+
Sbjct: 266 RVLGVKLAVGRRSVEPQPGLYGHYSVSGRLNVDLLDFAEELHEVKVKTLEEVADYLGVVK 325
Query: 415 ----------------GNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPI 458
+ R L Y D L +K F+ E+++V+G+P+
Sbjct: 326 IGERVTLEWWQIGEYWDDPSKREILRKYLRDDVRSTMGLAEK--FLPFGAELSQVSGLPL 383
Query: 459 SFLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATL 518
+++ ++ +L+R+A + ++PN + +G Y GA VL + G +E IA L
Sbjct: 384 DQVMAASVGFRLEWRLIREAAKLGELVPN--RVERSEGRYAGAIVLRPKPGVHED-IAVL 440
Query: 519 DFASLYPSIMMAYNLCYSTLVTPEDARKLNL---PPECVNKTPSGETFVKSNLQKGILPE 575
DFAS+YP+IM+ YN+ TLV P + PE G F KS G +
Sbjct: 441 DFASMYPNIMVKYNVGPDTLVRPGEEYGEEEVYTAPEV------GHKFRKS--PPGFFKK 492
Query: 576 ILEELLAARKRAKADLKE-AKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEIS 634
ILE L+ R++ ++++K+ D E +LD RQ A+K+ AN+ YG+ G + C E +
Sbjct: 493 ILERFLSWRRQIRSEMKKHPPDSPEYKLLDERQKAIKLLANASYGYMGWPHARWYCRECA 552
Query: 635 SSVTSYGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGRE 694
+VT++GR +I + E EVIYGDTDS+ V+ VE ++ E
Sbjct: 553 EAVTAWGRSIIRTAIR---------KAGELGLEVIYGDTDSLFVKNDPEKVERLIRFVEE 603
Query: 695 AADYISGTFIKPIKLEFEKVYYPYLLI-SKKRYAGLYWTNPEKFDKMDTKGIETVRRDNC 753
+ ++ +KVY +KKRY GL K+D G E VR D
Sbjct: 604 ELGF---------DIKVDKVYRRVFFTEAKKRYVGLTVDG-----KIDVVGFEAVRGDWS 649
Query: 754 LLVKNLVTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVK 813
L K + +L + AV YV++ I L ++D+ LVI K LT+ YE +
Sbjct: 650 ELAKETQFKVAEIVLKTGSVDEAVDYVRNIIEKLRRGQVDMRKLVIWKTLTRPPSMYEAR 709
Query: 814 AAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYY 873
HV A M + P G ++ YV+ K + Y R++ Y + + +D YY
Sbjct: 710 QPHVTAALLMERAGIKVEP--GAKIGYVVTKGS--GPLYTRAKP--YFMASKEEVDVEYY 763
Query: 874 LENQISKPLLRIFE 887
++ Q+ LRI +
Sbjct: 764 VDKQVVPAALRILQ 777
>sp|P07918|DPOL_HHV21 DNA polymerase catalytic subunit OS=Human herpesvirus 2 (strain 186)
GN=UL30 PE=3 SV=1
Length = 1240
Score = 201 bits (511), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 151/542 (27%), Positives = 250/542 (46%), Gaps = 101/542 (18%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+K+D+ + I R + YC++D+ L +L K + +AR+ G+ I+
Sbjct: 552 KKKDLSYRDIPAYYASGPAQRGVIGEYCVQDSLLVGQLFFKFLPHLELSAVARLAGINIT 611
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPN-------------------------------- 487
+ GQ I+V + LLR A QK ++P+
Sbjct: 612 RTIYDGQQIRVFTCLLRLAGQKGFILPDTQGRFRGLDKEAPKRPAVPRGEGERPGDGNGD 671
Query: 488 -------------------VKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIM 528
++ G Y+GA VL+ +GF+ P+ DFASLYPSI+
Sbjct: 672 EDKDDDEDGDEDGDEREEVARETGGRHVGYQGARVLDPTSGFHVDPVVVFDFASLYPSII 731
Query: 529 MAYNLCYSTL-VTPEDARKLNLPPECVNKTPSGET--FVKSNLQKGILPEILEELLAARK 585
A+NLC+STL + PE L + + G FVK+++++ +L +L + LA RK
Sbjct: 732 QAHNLCFSTLSLRPEAVAHLEADRDYLEIEVGGRRLFFVKAHVRESLLSILLRDWLAMRK 791
Query: 586 RAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMI 645
+ ++ + ++ P E +LD +Q A+K+ NSVYGFTG G LPC+ ++++VT+ GR+M+
Sbjct: 792 QIRSRIPQSP-PEEAVLLDKQQAAIKVVCNSVYGFTGVQHGLLPCLHVAATVTTIGREML 850
Query: 646 EHTKKLVEDK----------FTTVGGYE----HNAEVIYGDTDSVMVQFGVPTVEAAMKL 691
T+ V + F G ++ +IYGDTDS+ V T EA + +
Sbjct: 851 LATRAYVHARWAEFDQLLADFPEAAGMRAPGPYSMRIIYGDTDSIFVLCRGLTGEALVAM 910
Query: 692 GREAADYIS-GTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRR 750
G + A +IS F+ PIKLE EK + LLI+KK+Y G+ KM KG++ VR+
Sbjct: 911 GDKMASHISRALFLPPIKLECEKTFTKLLLIAKKKYIGVICGG-----KMLIKGVDLVRK 965
Query: 751 DNCLLVKNLVTECLHKILVD--------------------RDIPGAVQYVKSTISD---- 786
+NC + + + D R +P +Q + + D
Sbjct: 966 NNCAFINRTSRALVDLLFYDDTVSGAAAALAERPAEEWLARPLPEGLQAFGAVLVDAHRR 1025
Query: 787 LLMNRMDLSLLVITKGLTKTGDDYEVKA-AHVELAERMRKRDAATAPNVGDRVPYVIIKA 845
+ D+ V+T L++ Y K AH+ + ++ R A P++ DR+PYVI+
Sbjct: 1026 ITDPERDIQDFVLTAELSRHPRAYTNKRLAHLTVYYKLMARRAQV-PSIKDRIPYVIVAQ 1084
Query: 846 AK 847
+
Sbjct: 1085 TR 1086
Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 77/322 (23%), Positives = 135/322 (41%), Gaps = 57/322 (17%)
Query: 116 SAAIIRIFGVTREGHSVCCKVHGFEPYFYISCP------QGMGPDDISHFHQILEGRMRE 169
+ +I + G+T EGH V V+G YFY++ Q P D+ + L +RE
Sbjct: 179 AGTVITLLGLTPEGHRVAVHVYGTRQYFYMNKAEVDRHLQCRAPRDLC---ERLAAALRE 235
Query: 170 ANRNSKVPQFVRHIE--MVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLD 227
+ S H E +V++ + YY+ + + + V + + C
Sbjct: 236 SPGASFRGISADHFEAEVVERADVYYYETRPTLYYRVFVRSGRALAYLCDNFC------- 288
Query: 228 GLGMKSFMTYESNVLFALRFMIDC-NIVGGNWIEVPVGKYRKTAKTL------SYCQLEF 280
+ YE V RF++D V W + G+ A+ + +EF
Sbjct: 289 ----PAIRKYEGGVDATTRFILDNPGFVTFGWYRLKPGRGNAPAQPRPPTAFGTSSDVEF 344
Query: 281 DCLYSDIISRHPEGEFSKMAPFRILSFDIEC-AGRKGH--FP--EPTHDPVIQVANLVTL 335
+C ++ EG + ++++ FDIEC AG + FP E D VIQ++ L+
Sbjct: 345 NCTADNLAV---EGAMCDLPAYKLMCFDIECKAGGEDELAFPVAERPEDLVIQISCLLYD 401
Query: 336 QGEKQPFIRNVMTLKSC----------------APIVGVDVMSFETERDVLLAWRDFIRE 379
+ +L SC AP+V + F++E ++LLA+ F+++
Sbjct: 402 LSTTALEHILLFSLGSCDLPESHLSDLASRGLPAPVV----LEFDSEFEMLLAFMTFVKQ 457
Query: 380 VDPDVMIGYNICKFDLPYLIEK 401
P+ + GYNI FD P+++ K
Sbjct: 458 YGPEFVTGYNIINFDWPFVLTK 479
>sp|P89453|DPOL_HHV2H DNA polymerase catalytic subunit OS=Human herpesvirus 2 (strain HG52)
GN=UL30 PE=3 SV=1
Length = 1240
Score = 198 bits (504), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 149/542 (27%), Positives = 248/542 (45%), Gaps = 101/542 (18%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+K+D+ + I R + YC++D+ L +L K + +AR+ G+ I+
Sbjct: 552 KKKDLSYRDIPAYYASGPAQRGVIGEYCVQDSLLVGQLFFKFLPHLELSAVARLAGINIT 611
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPN-------------------------------- 487
+ GQ I+V + LLR A QK ++P+
Sbjct: 612 RTIYDGQQIRVFTCLLRLAGQKGFILPDTQGRFRGLDKEAPKRPAVPRGEGERPGDGNGD 671
Query: 488 -------------------VKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIM 528
++ G Y+GA VL+ +GF+ P+ DFASLYPSI+
Sbjct: 672 EDKDDDEDGDEDGDEREEVARETGGRHVGYQGARVLDPTSGFHVDPVVVFDFASLYPSII 731
Query: 529 MAYNLCYSTL-VTPEDARKLNLPPECVNKTPSGET--FVKSNLQKGILPEILEELLAARK 585
A+NLC+STL + PE L + + G FVK+++++ +L +L + LA RK
Sbjct: 732 QAHNLCFSTLSLRPEAVAHLEADRDYLEIEVGGRRLFFVKAHVRESLLSILLRDWLAMRK 791
Query: 586 RAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMI 645
+ ++ + ++ P E +LD +Q A+K+ NSVYGFTG G LPC+ ++++VT+ GR+M+
Sbjct: 792 QIRSRIPQST-PEEAVLLDKQQAAIKVVCNSVYGFTGVQHGLLPCLHVAATVTTIGREML 850
Query: 646 EHTKKLVEDK----------FTTVGGYE----HNAEVIYGDTDSVMVQFGVPTVEAAMKL 691
T+ V + F G ++ +IYGDTDS+ V T + +
Sbjct: 851 LATRAYVHARWAEFDQLLADFPEAAGMRAPGPYSMRIIYGDTDSIFVLCRGLTAAGLVAM 910
Query: 692 GREAADYIS-GTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRR 750
G + A +IS F+ PIKLE EK + LLI+KK+Y G+ KM KG++ VR+
Sbjct: 911 GDKMASHISRALFLPPIKLECEKTFTKLLLIAKKKYIGVICGG-----KMLIKGVDLVRK 965
Query: 751 DNCLLVKNLVTECLHKILVD--------------------RDIPGAVQYVKSTISD---- 786
+NC + + + D R +P +Q + + D
Sbjct: 966 NNCAFINRTSRALVDLLFYDDTVSGAAAALAERPAEEWLARPLPEGLQAFGAVLVDAHRR 1025
Query: 787 LLMNRMDLSLLVITKGLTKTGDDYEVK-AAHVELAERMRKRDAATAPNVGDRVPYVIIKA 845
+ D+ V+T L++ Y K AH+ + ++ R A P++ DR+PYVI+
Sbjct: 1026 ITDPERDIQDFVLTAELSRHPRAYTNKRLAHLTVYYKLMARRAQV-PSIKDRIPYVIVAQ 1084
Query: 846 AK 847
+
Sbjct: 1085 TR 1086
Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 77/322 (23%), Positives = 135/322 (41%), Gaps = 57/322 (17%)
Query: 116 SAAIIRIFGVTREGHSVCCKVHGFEPYFYISCP------QGMGPDDISHFHQILEGRMRE 169
+ +I + G+T EGH V V+G YFY++ Q P D+ + L +RE
Sbjct: 179 AGTVITLLGLTPEGHRVAVHVYGTRQYFYMNKAEVDRHLQCRAPRDLC---ERLAAALRE 235
Query: 170 ANRNSKVPQFVRHIE--MVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLD 227
+ S H E +V++ + YY+ + + + V + + C
Sbjct: 236 SPGASFRGISADHFEAEVVERADVYYYETRPTLYYRVFVRSGRALAYLCDNFC------- 288
Query: 228 GLGMKSFMTYESNVLFALRFMIDC-NIVGGNWIEVPVGKYRKTAKTL------SYCQLEF 280
+ YE V RF++D V W + G+ A+ + +EF
Sbjct: 289 ----PAIRKYEGGVDATTRFILDNPGFVTFGWYRLKPGRGNAPAQPRPPTAFGTSSDVEF 344
Query: 281 DCLYSDIISRHPEGEFSKMAPFRILSFDIEC-AGRKGH--FP--EPTHDPVIQVANLVTL 335
+C ++ EG + ++++ FDIEC AG + FP E D VIQ++ L+
Sbjct: 345 NCTADNLAV---EGAMCDLPAYKLMCFDIECKAGGEDELAFPVAERPEDLVIQISCLLYD 401
Query: 336 QGEKQPFIRNVMTLKSC----------------APIVGVDVMSFETERDVLLAWRDFIRE 379
+ +L SC AP+V + F++E ++LLA+ F+++
Sbjct: 402 LSTTALEHILLFSLGSCDLPESHLSDLASRGLPAPVV----LEFDSEFEMLLAFMTFVKQ 457
Query: 380 VDPDVMIGYNICKFDLPYLIEK 401
P+ + GYNI FD P+++ K
Sbjct: 458 YGPEFVTGYNIINFDWPFVLTK 479
>sp|P09854|DPOL_HHV1S DNA polymerase catalytic subunit OS=Human herpesvirus 1 (strain SC16)
GN=UL30 PE=3 SV=1
Length = 1235
Score = 197 bits (501), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 151/536 (28%), Positives = 248/536 (46%), Gaps = 101/536 (18%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+K+D+ + I R + YC++D+ L +L K + +AR+ G+ I+
Sbjct: 551 KKKDLSYRDIPAYYAAGPAQRGVIGEYCIQDSLLVGQLFFKFLPHLELSAVARLAGINIT 610
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNV----KQAGSE--------------------- 494
+ GQ I+V + LLR A QK ++P+ + AG E
Sbjct: 611 RTIYDGQQIRVFTCLLRLADQKGFILPDTQGRFRGAGGEAPKRPAAAREDEERPEEEGED 670
Query: 495 ----------------------QGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYN 532
Y+GA VL+ +GF+ P+ DFASLYPSI+ A+N
Sbjct: 671 EDEREEGGGEREPDGARETAGRHVGYQGARVLDPTSGFHVNPVVVFDFASLYPSIIQAHN 730
Query: 533 LCYSTLVTPEDA-RKLNLPPECVNKTPSGET--FVKSNLQKGILPEILEELLAARKRAKA 589
LC+STL DA L + + G FVK+++++ +L +L + LA RK+ ++
Sbjct: 731 LCFSTLSLRADAVAHLEAGKDYLEIEVGGRRLFFVKAHVRESLLSILLRDWLAMRKQIRS 790
Query: 590 DLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTK 649
+ ++ P E +LD +Q A+K+ NSVYGFTG G LPC+ ++++VT+ GR+M+ T+
Sbjct: 791 RIPQSS-PEEAVLLDKQQAAIKVVCNSVYGFTGVQHGLLPCLHVAATVTTIGREMLLATR 849
Query: 650 KLVEDKFTTV----------------GGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGR 693
+ V ++ G Y + +IYGDTDS+ V T +G
Sbjct: 850 EYVHARWAAFEQLLADFPEAADMRAPGPY--SMRIIYGDTDSIFVLCRGLTAAGLTAMGD 907
Query: 694 EAADYIS-GTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDN 752
+ A +IS F+ PIKLE EK + LLI+KK+Y G+ + KM KG++ VR++N
Sbjct: 908 KMASHISRALFLPPIKLECEKTFTKLLLIAKKKYIGVIYGG-----KMLIKGVDLVRKNN 962
Query: 753 CLLVKNLVTECLHKILVD--------------------RDIPGAVQYVKSTISD----LL 788
C + + + D R +P +Q + + D +
Sbjct: 963 CAFINRTSRALVDLLFYDDTVSGAAAALAERPAEEWLARPLPEGLQAFGAVLVDAHRRIT 1022
Query: 789 MNRMDLSLLVITKGLTKTGDDYEVK-AAHVELAERMRKRDAATAPNVGDRVPYVII 843
D+ V+T L++ Y K AH+ + ++ R A P++ DR+PYVI+
Sbjct: 1023 DPERDIQDFVLTAELSRHPRAYTNKRLAHLTVYYKLMARRAQV-PSIKDRIPYVIV 1077
Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 83/328 (25%), Positives = 138/328 (42%), Gaps = 69/328 (21%)
Query: 116 SAAIIRIFGVTREGHSVCCKVHGFEPYFYISCP------QGMGPDDISHFHQILEGRMRE 169
+ +I + G+T EGH V V+G YFY++ Q P D+ RM
Sbjct: 178 TGTVITLLGLTPEGHRVAVHVYGTRQYFYMNKEEVDRHLQCRAPRDLCE-------RMAA 230
Query: 170 ANRNSKVPQF----VRHIEM-VQKRSIMYYQQQKSQPFLKIVVALPTMVAS-CRGILDRG 223
A R S F H E V +R+ +YY + + F ++ V +++ C
Sbjct: 231 ALRESPGASFRGISADHFEAEVVERTDVYYYETRPALFYRVYVRSGRVLSYLCDNFC--- 287
Query: 224 IQLDGLGMKSFMTYESNVLFALRFMIDC-NIVGGNWIEVPVGKYRKTAKTL------SYC 276
+ YE V RF++D V W + G+ A+ +
Sbjct: 288 --------PAIKKYEGGVDATTRFILDNPGFVTFGWYRLKPGRNNTLAQPRAPMAFGTSS 339
Query: 277 QLEFDCLYSDIISRHPEGEFSKMAPFRILSFDIEC-AGRKGH--FPEPTH--DPVIQVAN 331
+EF+C ++ EG S + ++++ FDIEC AG + FP H D VIQ++
Sbjct: 340 DVEFNCTADNLAI---EGGMSDLPAYKLMCFDIECKAGGEDELAFPVAGHPEDLVIQISC 396
Query: 332 LVTLQGEKQPFIRNVM--TLKSC----------------APIVGVDVMSFETERDVLLAW 373
L L + +V+ +L SC P+V + F++E ++LLA+
Sbjct: 397 L--LYDLSTTALEHVLLFSLGSCDLPESHLNELAARGLPTPVV----LEFDSEFEMLLAF 450
Query: 374 RDFIREVDPDVMIGYNICKFDLPYLIEK 401
+++ P+ + GYNI FD P+L+ K
Sbjct: 451 MTLVKQYGPEFVTGYNIINFDWPFLLAK 478
>sp|P07917|DPOL_HHV1A DNA polymerase catalytic subunit OS=Human herpesvirus 1 (strain
Angelotti) GN=UL30 PE=1 SV=1
Length = 1235
Score = 197 bits (501), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 151/540 (27%), Positives = 249/540 (46%), Gaps = 101/540 (18%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+K+D+ + I R + YC++D+ L +L K + +AR+ G+ I+
Sbjct: 551 KKKDLSYRDIPAYYAAGPAQRGVIGEYCIQDSLLVGQLFFKFLPHLELSAVARLAGINIT 610
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNV----KQAGSE--------------------- 494
+ GQ I+V + LLR A QK ++P+ + AG E
Sbjct: 611 RTIYDGQQIRVFTCLLRLADQKGFILPDTQGRFRGAGGEAPKRPAAAREDEERPEEEGED 670
Query: 495 ----------------------QGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYN 532
Y+GA VL+ +GF+ P+ DFASLYPSI+ A+N
Sbjct: 671 EDEREEGGGEREPEGARETAGRHVGYQGARVLDPTSGFHVNPVVVFDFASLYPSIIQAHN 730
Query: 533 LCYSTLVTPEDA-RKLNLPPECVNKTPSGET--FVKSNLQKGILPEILEELLAARKRAKA 589
LC+STL DA L + + G FVK+++++ +L +L + LA RK+ ++
Sbjct: 731 LCFSTLSLRADAVAHLEAGKDYLEIEVGGRRLFFVKAHVRESLLSILLRDWLAMRKQIRS 790
Query: 590 DLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTK 649
+ ++ P E +LD +Q A+K+ NSVYGFTG G LPC+ ++++VT+ GR+M+ T+
Sbjct: 791 RIPQSS-PEEAVLLDKQQAAIKVVCNSVYGFTGVQHGLLPCLHVAATVTTIGREMLLATR 849
Query: 650 KLVEDKFTTV----------------GGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGR 693
+ V ++ G Y + +IYGDTDS+ V T +G
Sbjct: 850 EYVHARWAAFEQLLADFPEAADMRAPGPY--SMRIIYGDTDSIFVLCRGLTAAGLTAVGD 907
Query: 694 EAADYIS-GTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDN 752
+ A +IS F+ PIKLE EK + LLI+KK+Y G+ + KM KG++ VR++N
Sbjct: 908 KMASHISRALFLPPIKLECEKTFTKLLLIAKKKYIGVIYGG-----KMLIKGVDLVRKNN 962
Query: 753 CLLVKNLVTECLHKILVD--------------------RDIPGAVQYVKSTISD----LL 788
C + + + D R +P +Q + + D +
Sbjct: 963 CAFINRTSRALVDLLFYDDTVSGAAAALAERPAEEWLARPLPEGLQAFGAVLVDAHRRIT 1022
Query: 789 MNRMDLSLLVITKGLTKTGDDYEVK-AAHVELAERMRKRDAATAPNVGDRVPYVIIKAAK 847
D+ V+T L++ Y K AH+ + ++ R A P++ DR+PYVI+ +
Sbjct: 1023 DPERDIQDFVLTAELSRHPRAYTNKRLAHLTVYYKLMARRAQV-PSIKDRIPYVIVAQTR 1081
Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 83/328 (25%), Positives = 138/328 (42%), Gaps = 69/328 (21%)
Query: 116 SAAIIRIFGVTREGHSVCCKVHGFEPYFYISCP------QGMGPDDISHFHQILEGRMRE 169
+ +I + G+T EGH V V+G YFY++ Q P D+ RM
Sbjct: 178 TGTVITLLGLTPEGHRVAVHVYGTRQYFYMNKEEVDRHLQCRAPRDLCE-------RMAA 230
Query: 170 ANRNSKVPQF----VRHIEM-VQKRSIMYYQQQKSQPFLKIVVALPTMVAS-CRGILDRG 223
A R S F H E V +R+ +YY + + F ++ V +++ C
Sbjct: 231 ALRESPGASFRGISADHFEAEVVERTDVYYYETRPALFYRVYVRSGRVLSYLCDNFC--- 287
Query: 224 IQLDGLGMKSFMTYESNVLFALRFMIDC-NIVGGNWIEVPVGKYRKTAKTL------SYC 276
+ YE V RF++D V W + G+ A+ +
Sbjct: 288 --------PAIKKYEGGVDATTRFILDNPGFVTFGWYRLKPGRNNTLAQPRVPMAFGTSS 339
Query: 277 QLEFDCLYSDIISRHPEGEFSKMAPFRILSFDIEC-AGRKGH--FPEPTH--DPVIQVAN 331
+EF+C ++ EG S + ++++ FDIEC AG + FP H D VIQ++
Sbjct: 340 DVEFNCTADNLAI---EGGMSDLPAYKLMCFDIECKAGGEDELAFPVAGHPEDLVIQISC 396
Query: 332 LVTLQGEKQPFIRNVM--TLKSC----------------APIVGVDVMSFETERDVLLAW 373
L L + +V+ +L SC P+V + F++E ++LLA+
Sbjct: 397 L--LYDLSTTALEHVLLFSLGSCDLPESHLTELAARGLPTPVV----LEFDSEFEMLLAF 450
Query: 374 RDFIREVDPDVMIGYNICKFDLPYLIEK 401
+++ P+ + GYNI FD P+L+ K
Sbjct: 451 MTLVKQYGPEFVTGYNIINFDWPFLLAK 478
>sp|P04293|DPOL_HHV11 DNA polymerase catalytic subunit OS=Human herpesvirus 1 (strain 17)
GN=UL30 PE=1 SV=2
Length = 1235
Score = 197 bits (500), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 151/536 (28%), Positives = 248/536 (46%), Gaps = 101/536 (18%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+K+D+ + I R + YC++D+ L +L K + +AR+ G+ I+
Sbjct: 551 KKKDLSYRDIPAYYAAGPAQRGVIGEYCIQDSLLVGQLFFKFLPHLELSAVARLAGINIT 610
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNV----KQAGSE--------------------- 494
+ GQ I+V + LLR A QK ++P+ + AG E
Sbjct: 611 RTIYDGQQIRVFTCLLRLADQKGFILPDTQGRFRGAGGEAPKRPAAAREDEERPEEEGED 670
Query: 495 ----------------------QGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYN 532
Y+GA VL+ +GF+ P+ DFASLYPSI+ A+N
Sbjct: 671 EDEREEGGGEREPEGARETAGRHVGYQGARVLDPTSGFHVNPVVVFDFASLYPSIIQAHN 730
Query: 533 LCYSTLVTPEDA-RKLNLPPECVNKTPSGET--FVKSNLQKGILPEILEELLAARKRAKA 589
LC+STL DA L + + G FVK+++++ +L +L + LA RK+ ++
Sbjct: 731 LCFSTLSLRADAVAHLEAGKDYLEIEVGGRRLFFVKAHVRESLLSILLRDWLAMRKQIRS 790
Query: 590 DLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTK 649
+ ++ P E +LD +Q A+K+ NSVYGFTG G LPC+ ++++VT+ GR+M+ T+
Sbjct: 791 RIPQSS-PEEAVLLDKQQAAIKVVCNSVYGFTGVQHGLLPCLHVAATVTTIGREMLLATR 849
Query: 650 KLVEDKFTTV----------------GGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGR 693
+ V ++ G Y + +IYGDTDS+ V T +G
Sbjct: 850 EYVHARWAAFEQLLADFPEAADMRAPGPY--SMRIIYGDTDSIFVLCRGLTAAGLTAVGD 907
Query: 694 EAADYIS-GTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDN 752
+ A +IS F+ PIKLE EK + LLI+KK+Y G+ + KM KG++ VR++N
Sbjct: 908 KMASHISRALFLPPIKLECEKTFTKLLLIAKKKYIGVIYGG-----KMLIKGVDLVRKNN 962
Query: 753 CLLVKNLVTECLHKILVD--------------------RDIPGAVQYVKSTISD----LL 788
C + + + D R +P +Q + + D +
Sbjct: 963 CAFINRTSRALVDLLFYDDTVSGAAAALAERPAEEWLARPLPEGLQAFGAVLVDAHRRIT 1022
Query: 789 MNRMDLSLLVITKGLTKTGDDYEVK-AAHVELAERMRKRDAATAPNVGDRVPYVII 843
D+ V+T L++ Y K AH+ + ++ R A P++ DR+PYVI+
Sbjct: 1023 DPERDIQDFVLTAELSRHPRAYTNKRLAHLTVYYKLMARRAQV-PSIKDRIPYVIV 1077
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 83/328 (25%), Positives = 138/328 (42%), Gaps = 69/328 (21%)
Query: 116 SAAIIRIFGVTREGHSVCCKVHGFEPYFYISCP------QGMGPDDISHFHQILEGRMRE 169
+ +I + G+T EGH V V+G YFY++ Q P D+ RM
Sbjct: 178 TGTVITLLGLTPEGHRVAVHVYGTRQYFYMNKEEVDRHLQCRAPRDLCE-------RMAA 230
Query: 170 ANRNSKVPQF----VRHIEM-VQKRSIMYYQQQKSQPFLKIVVALPTMVAS-CRGILDRG 223
A R S F H E V +R+ +YY + + F ++ V +++ C
Sbjct: 231 ALRESPGASFRGISADHFEAEVVERTDVYYYETRPALFYRVYVRSGRVLSYLCDNFC--- 287
Query: 224 IQLDGLGMKSFMTYESNVLFALRFMIDC-NIVGGNWIEVPVGKYRKTAKTL------SYC 276
+ YE V RF++D V W + G+ A+ +
Sbjct: 288 --------PAIKKYEGGVDATTRFILDNPGFVTFGWYRLKPGRNNTLAQPAAPMAFGTSS 339
Query: 277 QLEFDCLYSDIISRHPEGEFSKMAPFRILSFDIEC-AGRKGH--FPEPTH--DPVIQVAN 331
+EF+C ++ EG S + ++++ FDIEC AG + FP H D VIQ++
Sbjct: 340 DVEFNCTADNLAI---EGGMSDLPAYKLMCFDIECKAGGEDELAFPVAGHPEDLVIQISC 396
Query: 332 LVTLQGEKQPFIRNVM--TLKSC----------------APIVGVDVMSFETERDVLLAW 373
L L + +V+ +L SC P+V + F++E ++LLA+
Sbjct: 397 L--LYDLSTTALEHVLLFSLGSCDLPESHLNELAARGLPTPVV----LEFDSEFEMLLAF 450
Query: 374 RDFIREVDPDVMIGYNICKFDLPYLIEK 401
+++ P+ + GYNI FD P+L+ K
Sbjct: 451 MTLVKQYGPEFVTGYNIINFDWPFLLAK 478
>sp|P04292|DPOL_HHV1K DNA polymerase catalytic subunit OS=Human herpesvirus 1 (strain KOS)
GN=UL30 PE=1 SV=1
Length = 1235
Score = 197 bits (500), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 151/536 (28%), Positives = 248/536 (46%), Gaps = 101/536 (18%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+K+D+ + I R + YC++D+ L +L K + +AR+ G+ I+
Sbjct: 551 KKKDLSYRDIPAYYATGPAQRGVIGEYCIQDSLLVGQLFFKFLPHLELSAVARLAGINIT 610
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNV----KQAGSE--------------------- 494
+ GQ I+V + LLR A QK ++P+ + AG E
Sbjct: 611 RTIYDGQQIRVFTCLLRLADQKGFILPDTQGRFRGAGGEAPKRPAAAREDEERPEEEGED 670
Query: 495 ----------------------QGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYN 532
Y+GA VL+ +GF+ P+ DFASLYPSI+ A+N
Sbjct: 671 EDEREEGGGEREPEGARETAGRHVGYQGAKVLDPTSGFHVNPVVVFDFASLYPSIIQAHN 730
Query: 533 LCYSTLVTPEDA-RKLNLPPECVNKTPSGET--FVKSNLQKGILPEILEELLAARKRAKA 589
LC+STL DA L + + G FVK+++++ +L +L + LA RK+ ++
Sbjct: 731 LCFSTLSLRADAVAHLEAGKDYLEIEVGGRRLFFVKAHVRESLLSILLRDWLAMRKQIRS 790
Query: 590 DLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTK 649
+ ++ P E +LD +Q A+K+ NSVYGFTG G LPC+ ++++VT+ GR+M+ T+
Sbjct: 791 RIPQSS-PEEAVLLDKQQAAIKVVCNSVYGFTGVQHGLLPCLHVAATVTTIGREMLLATR 849
Query: 650 KLVEDKFTTV----------------GGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGR 693
+ V ++ G Y + +IYGDTDS+ V T +G
Sbjct: 850 EYVHARWAAFEQLLADFPEAADMRAPGPY--SMRIIYGDTDSIFVLCRGLTAAGLTAMGD 907
Query: 694 EAADYIS-GTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDN 752
+ A +IS F+ PIKLE EK + LLI+KK+Y G+ + KM KG++ VR++N
Sbjct: 908 KMASHISRALFLPPIKLECEKTFTKLLLIAKKKYIGVIYGG-----KMLIKGVDLVRKNN 962
Query: 753 CLLVKNLVTECLHKILVD--------------------RDIPGAVQYVKSTISD----LL 788
C + + + D R +P +Q + + D +
Sbjct: 963 CAFINRTSRALVDLLFYDDTVSGAAAALAERPAEEWLARPLPEGLQAFGAVLVDAHRRIT 1022
Query: 789 MNRMDLSLLVITKGLTKTGDDYEVK-AAHVELAERMRKRDAATAPNVGDRVPYVII 843
D+ V+T L++ Y K AH+ + ++ R A P++ DR+PYVI+
Sbjct: 1023 DPERDIQDFVLTAELSRHPRAYTNKRLAHLTVYYKLMARRAQV-PSIKDRIPYVIV 1077
Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 83/328 (25%), Positives = 138/328 (42%), Gaps = 69/328 (21%)
Query: 116 SAAIIRIFGVTREGHSVCCKVHGFEPYFYISCP------QGMGPDDISHFHQILEGRMRE 169
+ +I + G+T EGH V V+G YFY++ Q P D+ RM
Sbjct: 178 TGTVITLLGLTPEGHRVAVHVYGTRQYFYMNKEEVDRHLQCRAPRDLCE-------RMAA 230
Query: 170 ANRNSKVPQF----VRHIEM-VQKRSIMYYQQQKSQPFLKIVVALPTMVAS-CRGILDRG 223
A R S F H E V +R+ +YY + + F ++ V +++ C
Sbjct: 231 ALRESPGASFRGISADHFEAEVVERTDVYYYETRPALFYRVYVRSGRVLSYLCDNFC--- 287
Query: 224 IQLDGLGMKSFMTYESNVLFALRFMIDC-NIVGGNWIEVPVGKYRKTAKTL------SYC 276
+ YE V RF++D V W + G+ A+ +
Sbjct: 288 --------PAIKKYEGGVDATTRFILDNPGFVTFGWYRLKPGRNNTLAQPRAPMAFGTSS 339
Query: 277 QLEFDCLYSDIISRHPEGEFSKMAPFRILSFDIEC-AGRKGH--FPEPTH--DPVIQVAN 331
+EF+C ++ EG S + ++++ FDIEC AG + FP H D VIQ++
Sbjct: 340 DVEFNCTADNLAI---EGGMSDLPAYKLMCFDIECKAGGEDELAFPVAGHPEDLVIQISC 396
Query: 332 LVTLQGEKQPFIRNVM--TLKSC----------------APIVGVDVMSFETERDVLLAW 373
L L + +V+ +L SC P+V + F++E ++LLA+
Sbjct: 397 L--LYDLSTTALEHVLLFSLGSCDLPESHLNELAARGLPTPVV----LEFDSEFEMLLAF 450
Query: 374 RDFIREVDPDVMIGYNICKFDLPYLIEK 401
+++ P+ + GYNI FD P+L+ K
Sbjct: 451 MTLVKQYGPEFVTGYNIINFDWPFLLAK 478
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 373,543,053
Number of Sequences: 539616
Number of extensions: 16097094
Number of successful extensions: 41724
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 40590
Number of HSP's gapped (non-prelim): 457
length of query: 1014
length of database: 191,569,459
effective HSP length: 128
effective length of query: 886
effective length of database: 122,498,611
effective search space: 108533769346
effective search space used: 108533769346
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)