Query 001782
Match_columns 1013
No_of_seqs 685 out of 6556
Neff 9.5
Searched_HMMs 29240
Date Tue Mar 26 16:11:34 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001782.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1079-1083//hhsearch_pdb/001782hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 663.0 35.6 600 27-637 4-753 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 513.4 29.4 474 99-603 73-557 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 497.5 33.8 559 64-625 4-627 (680)
4 4eco_A Uncharacterized protein 1.0 1 1 496.3 20.5 520 33-624 28-630 (636)
5 3j0a_A TOLL-like receptor 5; m 1.0 1 1 482.4 32.7 522 64-625 14-565 (844)
6 3t6q_A CD180 antigen; protein- 1.0 1 1 477.0 30.1 526 66-624 14-564 (606)
7 4ecn_A Leucine-rich repeat pro 1.0 1 1 475.4 28.4 488 32-621 266-865 (876)
8 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 467.2 28.8 528 61-625 4-563 (606)
9 1ziw_A TOLL-like receptor 3; i 1.0 1 1 466.8 35.3 518 76-602 49-627 (680)
10 3t6q_A CD180 antigen; protein- 1.0 1 1 464.9 32.7 498 74-603 55-566 (606)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=663.02 Aligned_cols=600 Identities=29% Similarity=0.433 Sum_probs=413.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCC---CCCC--------
Q ss_conf 25777998879999999984479999998989999985058999689898169995013555456---7423--------
Q 001782 27 CFALHSNETDRLALLAIKSQLQDPLGVTSSWNNSMNLCQWTGVTCGHRHQRVTVLDLSNRSIEGI---LSPY-------- 95 (1013)
Q Consensus 27 ~~~~~~~~~~~~~Ll~~k~~~~~~~~~~~sw~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~l~~~---~~~~-------- 95 (1013)
|.+..+.++|++||++||+++.||. .+++|..+.+||+|+||+|+ .++|+.|||++..+.|. +++.
T Consensus 4 ~~~~~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~ 80 (768)
T 3rgz_A 4 ASPSQSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLE 80 (768)
T ss_dssp ----CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCEEEC--CCCEEEEECCCCCCCCCCCCCCHHHHCCCCCC
T ss_conf 7656687899999999996678962-14687899987688413878--99278987789986775576696573168022
Q ss_pred ---------------CCCCCCCCEEEECCCCCCCCCCC--CCCCCCCCEEEECCCCCCCCCCCCCC-CCCCCCCEECCCC
Q ss_conf ---------------47877777434015876546996--54776421498516886544799840-0377882421356
Q 001782 96 ---------------VGNLSFLRFINFANNGFSGEIPG--EIGRLFRLETLILANNSFSGKIPSNL-SRCSNLINFHARG 157 (1013)
Q Consensus 96 ---------------l~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~ls~n~l~~~~p~~l-~~l~~L~~L~l~~ 157 (1013)
++.+++|++|+|++|.++|.+|. .++.+++|++|+|++|.+.+.+|..+ .++++|++|++++
T Consensus 81 ~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~ 160 (768)
T 3rgz_A 81 SLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160 (768)
T ss_dssp EEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS
T ss_pred CCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCC
T ss_conf 46786888678703324578899898989857870789678727889998989688267747977856388999898979
Q ss_pred CCCCCCCCCCC--CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 53348789832--3233322403202433454488886688875556631652478899832445643465543343467
Q 001782 158 NNLVGQIPPDI--GYSWLKLEFLSLRDNLLAGQLAPSIGNISNLQVLSIGENRLSGRLPDSLGQLRSLYYLSISENAFSG 235 (1013)
Q Consensus 158 n~~~~~~p~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 235 (1013)
|.+++..|... ...+++|++|++++|.+.+..+ ++.+++|++|++++|.+.+.+|. ++.+++|++|++++|.+++
T Consensus 161 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~ 237 (768)
T 3rgz_A 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG 237 (768)
T ss_dssp SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCS
T ss_pred CCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCCC
T ss_conf 83588587155664358988989897880346578--45478689898928827887711-1269999989794885878
Q ss_pred CCCCHHCCCCCCCEEECCCCCC----------------------CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 8950001677203001237766----------------------788887768899987679944033645489988889
Q 001782 236 MFPSSIFNISSLESISLLGNRL----------------------EGSLPVNIGFSLPNLENLSVRQNNYTGSLPHSLSNA 293 (1013)
Q Consensus 236 ~~~~~~~~l~~L~~L~L~~n~l----------------------~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 293 (1013)
..|..+..+++|++|++++|++ ++.+|..++..+++|++|++++|++++.+|..+.++
T Consensus 238 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l 317 (768)
T 3rgz_A 238 DFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317 (768)
T ss_dssp CHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGC
T ss_pred CCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCC
T ss_conf 16577744888898989888665716724368789897917855772588888446868899896896778423677558
Q ss_pred CCCCEEECCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCHHHHH-------------------HCCC--CCCCC
Q ss_conf 99966974257243335633-34888743001345768888889813443-------------------1034--54111
Q 001782 294 SNLRLLDFSLNHFSGQVKID-FNRLPNLFRLSFSKNNLGTGAIGDLDFIA-------------------HLTN--CSKLE 351 (1013)
Q Consensus 294 ~~L~~L~l~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~-------------------~l~~--~~~L~ 351 (1013)
++|+.|++++|++.+..+.. +..+++|+.|++++|.+.......+.... .+.. +++|+
T Consensus 318 ~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~ 397 (768)
T 3rgz_A 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397 (768)
T ss_dssp TTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCC
T ss_pred CCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCC
T ss_conf 77667789788525737978872488887884847843762309898632277199862787478767666533247761
Q ss_pred CCCCCCCCCCCCCCHHHHCCHHHHHHHHC-----CCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 20454433489662011011034778731-----4126776024566636414665557735113899999899844785
Q 001782 352 ALGLDTNIFGGVLPLSIANLSSTIILFSM-----GLNQIYVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQVLDLHHNN 426 (1013)
Q Consensus 352 ~l~l~~n~~~~~~p~~~~~l~~~~~~~~~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~ 426 (1013)
.++++.|.+.+..|..+.++.++..+.-. +.....+..+++|+.|++++|.+++.+|..+..+++|+.|++++|+
T Consensus 398 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~ 477 (768)
T 3rgz_A 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477 (768)
T ss_dssp EEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred EEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCC
T ss_conf 89897784654248777568987989895884668546777449988989897881547189788287773299901995
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCHHHHHCCCCCEECCCCCC
Q ss_conf 67668853356575687776887246878866446745450110233222348700110000013321479810266883
Q 001782 427 LDGHIPESLGNLTILNSLDLGFNKLRGHVPSSLGNCQNLMLLSVSNNKLTGALPPQILGIVTLSILLDLSGNLLTGSIPA 506 (1013)
Q Consensus 427 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~ls~N~l~~~~~~ 506 (1013)
+.+..|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++++.+|..+.. ++.|+.|++++|.+++.+|.
T Consensus 478 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD-CRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGG-CTTCCEEECCSSEEESBCCG
T ss_pred CCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCC-CCCCCEEECCCCCCCCCCCH
T ss_conf 13758878816998998975399518968768856899998989789433748877708-89899898988846882795
Q ss_pred C----------------------------------------------------------------------CCCCCCCCE
Q ss_conf 4----------------------------------------------------------------------357677748
Q 001782 507 E----------------------------------------------------------------------VGNLKNLVQ 516 (1013)
Q Consensus 507 ~----------------------------------------------------------------------~~~l~~L~~ 516 (1013)
. +..+++|+.
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~ 636 (768)
T 3rgz_A 557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636 (768)
T ss_dssp GGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCE
T ss_pred HHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCE
T ss_conf 78604212232013454211113444322223322210013556323200232110011331004627433403356657
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 97558878887810000454432001226323456470000447778573556623565610124645335010578638
Q 001782 517 LGLSENRFSNEIPVSLSACTTLEYLYMEGNSLTGSIPLALKTLKSIKELDLSRNNLSGQIPEFLENLSFLEYLNLSYNHL 596 (1013)
Q Consensus 517 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 596 (1013)
|+|++|.+++.+|..+..+++|+.|+|++|++++.+|..++.+++|+.|||++|++++.+|..+..+++|+.||+++|++
T Consensus 637 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp EECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred EECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCC
T ss_conf 97858801555877884141578784868803887896784777899898978802386886775788789787968815
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 78789997447876101508867778987788886557899
Q 001782 597 EGEVPRRGVFSNKTRFYFTGNKRLCGGLDELHLPVCHSAGP 637 (1013)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~~~~~~~~~~~~ 637 (1013)
+|.+|..+++..+....+.|||++||.|. +.|+....
T Consensus 717 ~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l----~~C~~~~~ 753 (768)
T 3rgz_A 717 SGPIPEMGQFETFPPAKFLNNPGLCGYPL----PRCDPSNA 753 (768)
T ss_dssp EEECCSSSSGGGSCGGGGCSCTEEESTTS----CCCCSCC-
T ss_pred CCCCCCCHHHCCCCHHHHCCCCHHCCCCC----CCCCCCCC
T ss_conf 56089960102489777569832108877----67888766
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=513.38 Aligned_cols=474 Identities=30% Similarity=0.438 Sum_probs=343.3
Q ss_pred CCCCCEEEECCCCCCCC--CCCCCCCCCCCEEEECCCCCCCCCCCC--CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 77777434015876546--996547764214985168865447998--40037788242135653348789832323332
Q 001782 99 LSFLRFINFANNGFSGE--IPGEIGRLFRLETLILANNSFSGKIPS--NLSRCSNLINFHARGNNLVGQIPPDIGYSWLK 174 (1013)
Q Consensus 99 l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~ls~n~l~~~~p~--~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~ 174 (1013)
+.+|++|++.++.+.+. +|..|+.+++|++|+|++|.++|.+|. .++++++|++|++++|.+.+.+|..+...+++
T Consensus 73 l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 152 (768)
T 3rgz_A 73 LLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS 152 (768)
T ss_dssp TTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTT
T ss_pred HHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCC
T ss_conf 73168022467868886787033245788998989898578707896787278899989896882677479778563889
Q ss_pred CCCEECCCCCCCCCCCCC---CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEE
Q ss_conf 240320243345448888---66888755566316524788998324456434655433434678950001677203001
Q 001782 175 LEFLSLRDNLLAGQLAPS---IGNISNLQVLSIGENRLSGRLPDSLGQLRSLYYLSISENAFSGMFPSSIFNISSLESIS 251 (1013)
Q Consensus 175 L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 251 (1013)
|++|++++|.+++..+.. ++++++|++|++++|.+.+..|. ..+++|++|++++|.+++.+|. +..+++|++|+
T Consensus 153 L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~ 229 (768)
T 3rgz_A 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLD 229 (768)
T ss_dssp CSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEE
T ss_pred CCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCC--CCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEE
T ss_conf 99898979835885871556643589889898978803465784--5478689898928827887711-12699999897
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCCCCCCCCCC
Q ss_conf 237766788887768899987679944033645489988889999669742572433356333488-8743001345768
Q 001782 252 LLGNRLEGSLPVNIGFSLPNLENLSVRQNNYTGSLPHSLSNASNLRLLDFSLNHFSGQVKIDFNRL-PNLFRLSFSKNNL 330 (1013)
Q Consensus 252 L~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l 330 (1013)
+++|++++.+|..+. .+++|++|++++|++++.+|.. .+++|+.|++++|++++..+..+... ++|+.|++++|.+
T Consensus 230 Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l 306 (768)
T 3rgz_A 230 ISGNKLSGDFSRAIS-TCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306 (768)
T ss_dssp CCSSCCCSCHHHHTT-TCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEE
T ss_pred CCCCCCCCCCCHHHH-CCCCCCEEECCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCC
T ss_conf 948858781657774-4888898989888665716724--3687898979178557725888884468688998968967
Q ss_pred CCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHCCCHHHHHHCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 88888981344310345411120454433489662011011034778731412677602456663641466555773511
Q 001782 331 GTGAIGDLDFIAHLTNCSKLEALGLDTNIFGGVLPLSIANLSSTIILFSMGLNQIYVKNLVNLNGFGLEYNQLTGPIPHA 410 (1013)
Q Consensus 331 ~~~~~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~ 410 (1013)
... .+..+..+++|+.++++.|.+.+.+|.. .+..+++|+.|++++|.+++.+|..
T Consensus 307 ~~~------~p~~~~~l~~L~~L~L~~n~l~~~ip~~------------------~l~~l~~L~~L~Ls~n~l~~~~p~~ 362 (768)
T 3rgz_A 307 YGA------VPPFFGSCSLLESLALSSNNFSGELPMD------------------TLLKMRGLKVLDLSFNEFSGELPES 362 (768)
T ss_dssp EEC------CCGGGGGCTTCCEEECCSSEEEEECCHH------------------HHTTCTTCCEEECCSSEEEECCCTT
T ss_pred CCC------CCHHHHCCCCCCEEECCCCCCCCCCCHH------------------HHHCCCCCCEEECCCCCCCCCCCHH
T ss_conf 784------2367755877667789788525737978------------------8724888878848478437623098
Q ss_pred CCCCC-CCCEEECCCCCCCCCCCCCCCC--CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCC
Q ss_conf 38999-9989984478567668853356--57568777688724687886644674545011023322234870011000
Q 001782 411 IGELR-NLQVLDLHHNNLDGHIPESLGN--LTILNSLDLGFNKLRGHVPSSLGNCQNLMLLSVSNNKLTGALPPQILGIV 487 (1013)
Q Consensus 411 ~~~l~-~L~~L~L~~N~l~~~~~~~~~~--l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 487 (1013)
+..++ +|+.|++++|++.+..+..+.. +++|+.|++++|.+++.+|..+.++++|+.|++++|++++.+|..+.. +
T Consensus 363 l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l 441 (768)
T 3rgz_A 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-L 441 (768)
T ss_dssp HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG-C
T ss_pred HHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHC-C
T ss_conf 986322771998627874787676665332477618989778465424877756898798989588466854677744-9
Q ss_pred CHHHHHCCCCCEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 00133214798102668834357677748975588788878100004544320012263234564700004477785735
Q 001782 488 TLSILLDLSGNLLTGSIPAEVGNLKNLVQLGLSENRFSNEIPVSLSACTTLEYLYMEGNSLTGSIPLALKTLKSIKELDL 567 (1013)
Q Consensus 488 ~~l~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 567 (1013)
+.|+.|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|++++.+|.++..+++|+.|+|
T Consensus 442 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 521 (768)
T 3rgz_A 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEEC
T ss_conf 98898989788154718978828777329990199513758878816998998975399518968768856899998989
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 566235656101246453350105786387878999
Q 001782 568 SRNNLSGQIPEFLENLSFLEYLNLSYNHLEGEVPRR 603 (1013)
Q Consensus 568 s~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 603 (1013)
++|++++.+|..+..+++|+.|++++|+++|.+|..
T Consensus 522 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~ 557 (768)
T 3rgz_A 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557 (768)
T ss_dssp CSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGG
T ss_pred CCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHH
T ss_conf 789433748877708898998989888468827957
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=497.52 Aligned_cols=559 Identities=22% Similarity=0.218 Sum_probs=465.2
Q ss_pred CEEEEEEECCC---------CCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 50589996898---------981699950135554567423478777774340158765469965477642149851688
Q 001782 64 CQWTGVTCGHR---------HQRVTVLDLSNRSIEGILSPYVGNLSFLRFINFANNGFSGEIPGEIGRLFRLETLILANN 134 (1013)
Q Consensus 64 c~w~gv~c~~~---------~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 134 (1013)
|.++.|.|+.. ..+++.||++++.+++..+..++.+++|++|+|++|.+++..|..|+++++|++|+|++|
T Consensus 4 ~~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 4 VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp CBSSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred EECCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCC
T ss_conf 67874487779805264124888768889899778759788717876758878899648569778740667688889998
Q ss_pred CCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 65447998400377882421356533487898323233322403202433454488886688875556631652478899
Q 001782 135 SFSGKIPSNLSRCSNLINFHARGNNLVGQIPPDIGYSWLKLEFLSLRDNLLAGQLAPSIGNISNLQVLSIGENRLSGRLP 214 (1013)
Q Consensus 135 ~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 214 (1013)
.+++..+..++++++|++|++++|.+. .+|...+..+++|++|++++|.+++..+..++++++|++|++++|.+++..+
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred CCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCH
T ss_conf 567568545303888898989899668-5396674156788889898995246672111245567779745884365297
Q ss_pred CCCC--CCCCCCEEECCCCCCCCCCCCHHCCC---------------------------CCCCEEECCCCCCCCCCCCCC
Q ss_conf 8324--45643465543343467895000167---------------------------720300123776678888776
Q 001782 215 DSLG--QLRSLYYLSISENAFSGMFPSSIFNI---------------------------SSLESISLLGNRLEGSLPVNI 265 (1013)
Q Consensus 215 ~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l---------------------------~~L~~L~L~~n~l~~~lp~~~ 265 (1013)
..+. .+++|+.|++++|.+++..|..+..+ ++|+.|++++|.+.+..|..+
T Consensus 163 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~ 242 (680)
T 1ziw_A 163 EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242 (680)
T ss_dssp HHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTT
T ss_pred HHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHH
T ss_conf 88624466632179888982565581555322344554305664680567778777531510088745774364686675
Q ss_pred CCCCC--CCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCHHH--
Q ss_conf 88999--876799440336454899888899996697425724333563334888743001345768888-8898134--
Q 001782 266 GFSLP--NLENLSVRQNNYTGSLPHSLSNASNLRLLDFSLNHFSGQVKIDFNRLPNLFRLSFSKNNLGTG-AIGDLDF-- 340 (1013)
Q Consensus 266 ~~~l~--~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~-- 340 (1013)
. .++ +|+.|++++|++++..+..|..+++|+.|++++|++.+..+..|..+++|+.|++++|..... ....++.
T Consensus 243 ~-~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~ 321 (680)
T 1ziw_A 243 L-GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKID 321 (680)
T ss_dssp G-GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEEC
T ss_pred H-CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCCCCCCCCCC
T ss_conf 1-467677888778788767568021167410568557788567658656267888557736331321333335545438
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHC-------CCHHHHHHCC--CCCCEEECCCCCCCCCCCCCC
Q ss_conf 4310345411120454433489662011011034778731-------4126776024--566636414665557735113
Q 001782 341 IAHLTNCSKLEALGLDTNIFGGVLPLSIANLSSTIILFSM-------GLNQIYVKNL--VNLNGFGLEYNQLTGPIPHAI 411 (1013)
Q Consensus 341 ~~~l~~~~~L~~l~l~~n~~~~~~p~~~~~l~~~~~~~~~-------~~~~~~~~~l--~~L~~L~L~~n~l~~~~p~~~ 411 (1013)
...+..+++|+.++++.|.+.+..|..+..+.++..+.-. .+....+..+ ++|+.+++++|++++..|..|
T Consensus 322 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~ 401 (680)
T 1ziw_A 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF 401 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTT
T ss_pred HHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCEECHHHH
T ss_conf 65624677788887989826878855740656872898879801443235322024556867668899997776775442
Q ss_pred CCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC--CCCCCHHHCCCC
Q ss_conf 899999899844785676688-53356575687776887246878866446745450110233222--348700110000
Q 001782 412 GELRNLQVLDLHHNNLDGHIP-ESLGNLTILNSLDLGFNKLRGHVPSSLGNCQNLMLLSVSNNKLT--GALPPQILGIVT 488 (1013)
Q Consensus 412 ~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~~~~ 488 (1013)
..+++|+.|++++|.+.+.++ ..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+. +.+|..+.. ++
T Consensus 402 ~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~-l~ 480 (680)
T 1ziw_A 402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP-LR 480 (680)
T ss_dssp TTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTT-CT
T ss_pred HCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCC-CC
T ss_conf 07788888867787575435755325754612784489975422764550075431011014644225667764555-78
Q ss_pred HHHHHCCCCCEECCCCCCCCCCCCCCCEEECCCCCCCCCCC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01332147981026688343576777489755887888781--------0000454432001226323456470000447
Q 001782 489 LSILLDLSGNLLTGSIPAEVGNLKNLVQLGLSENRFSNEIP--------VSLSACTTLEYLYMEGNSLTGSIPLALKTLK 560 (1013)
Q Consensus 489 ~l~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 560 (1013)
.|+.|++++|++++..+..+..+++|+.|++++|.+.+..+ ..|..+++|+.|+|++|+++...+..|..++
T Consensus 481 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~ 560 (680)
T 1ziw_A 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF 560 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHCCCCC
T ss_conf 78999899998776794463455346888588997300000004677414233799888888999978877977734666
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC-C-CCCCCCCEEEECCCCCCCCCC
Q ss_conf 7785735566235656101246453350105786387878999-7-447876101508867778987
Q 001782 561 SIKELDLSRNNLSGQIPEFLENLSFLEYLNLSYNHLEGEVPRR-G-VFSNKTRFYFTGNKRLCGGLD 625 (1013)
Q Consensus 561 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~-~~~~~~~~~~~~n~~~c~~~~ 625 (1013)
+|+.|+|++|++++..+..|..+++|+.|++++|.+++.++.. . .++.++.+.+.+|||.|+|..
T Consensus 561 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 561 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 7522389999777679768378988888989999687059668301146657798318970257766
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=496.30 Aligned_cols=520 Identities=19% Similarity=0.264 Sum_probs=370.4
Q ss_pred CHHHHHHHHHHHHHCCCC-CCC-------CCCCCCCCCCCEE---EEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 988799999999844799-999-------9898999998505---89996898981699950135554567423478777
Q 001782 33 NETDRLALLAIKSQLQDP-LGV-------TSSWNNSMNLCQW---TGVTCGHRHQRVTVLDLSNRSIEGILSPYVGNLSF 101 (1013)
Q Consensus 33 ~~~~~~~Ll~~k~~~~~~-~~~-------~~sw~~~~~~c~w---~gv~c~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~ 101 (1013)
...|+.||.++|.++.++ |.. ..+|+.+.+||.| .||+|+.. ++|+.|+|+++++.|.+|+.++.|++
T Consensus 28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~~ 106 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTE 106 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCTT
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC-CCEEEEEECCCCCCCCCCHHHHCCCC
T ss_conf 77889999999997589974547767765788777998000147798487678-97889984276657728857856845
Q ss_pred CCEEEECCCCC------CC------CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC-CCCCEECCCCCCCCCCCCCCC
Q ss_conf 77434015876------54------699654776421498516886544799840037-788242135653348789832
Q 001782 102 LRFINFANNGF------SG------EIPGEIGRLFRLETLILANNSFSGKIPSNLSRC-SNLINFHARGNNLVGQIPPDI 168 (1013)
Q Consensus 102 L~~L~L~~n~l------~~------~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l-~~L~~L~l~~n~~~~~~p~~~ 168 (1013)
|++|+|++|.+ .+ .+|... +..|+ ++++.|.+.+.+|..+..+ ..+..+++....+..
T Consensus 107 L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~------ 177 (636)
T 4eco_A 107 LEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK------ 177 (636)
T ss_dssp CCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC------
T ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCCHHHH--HHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCC------
T ss_conf 1189876885123774334532356733888--88887-65777554117066677887777642755465410------
Q ss_pred CCCCCCCCCEECC--CCCCCCCCCCCCCCCCCCCEEEECCCCCCCC-----------------CCCCCC--CCCCCCEEE
Q ss_conf 3233322403202--4334544888866888755566316524788-----------------998324--456434655
Q 001782 169 GYSWLKLEFLSLR--DNLLAGQLAPSIGNISNLQVLSIGENRLSGR-----------------LPDSLG--QLRSLYYLS 227 (1013)
Q Consensus 169 ~~~l~~L~~L~l~--~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------~p~~~~--~l~~L~~L~ 227 (1013)
.....++.+.+. .|.+++ +|..++++++|++|++++|.+++. +|..++ ++++|++|+
T Consensus 178 -~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~ 255 (636)
T 4eco_A 178 -SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE 255 (636)
T ss_dssp -CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred -CCCCCHHHHHHCCCCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEE
T ss_conf -13344213001013677750-7877725647878988688236642322122222100102486322004468788898
Q ss_pred CCCCCCCCCCCCHHCCCCCCCEEECCCCC-CCC-CCCCCCCCCC------CCCCEEEEEECCCCCCCCC--CCCCCCCCC
Q ss_conf 43343467895000167720300123776-678-8887768899------9876799440336454899--888899996
Q 001782 228 ISENAFSGMFPSSIFNISSLESISLLGNR-LEG-SLPVNIGFSL------PNLENLSVRQNNYTGSLPH--SLSNASNLR 297 (1013)
Q Consensus 228 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~lp~~~~~~l------~~L~~L~l~~n~l~~~~~~--~l~~l~~L~ 297 (1013)
+++|.+.+.+|..+.++++|++|++++|+ +++ .+|..++ .+ ++|+.|++++|+++ .+|. .+.++++|+
T Consensus 256 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~-~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~ 333 (636)
T 4eco_A 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ-ALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLG 333 (636)
T ss_dssp EECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHH-HHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCC
T ss_pred ECCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHH-HHHCCCCCCCCCEEECCCCCCC-CCCCHHHHCCCCCCC
T ss_conf 04885776283888349997889784798876653357887-5430465788888989799377-667655542578889
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHH
Q ss_conf 69742572433356333488874300134576888888981344310345411120454433489662011011034778
Q 001782 298 LLDFSLNHFSGQVKIDFNRLPNLFRLSFSKNNLGTGAIGDLDFIAHLTNCSKLEALGLDTNIFGGVLPLSIANLSSTIIL 377 (1013)
Q Consensus 298 ~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~p~~~~~l~~~~~~ 377 (1013)
.|++++|++++.++ .|..+++|+.|++++|.+...+ ..
T Consensus 334 ~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp-------------------------------~~---------- 371 (636)
T 4eco_A 334 MLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIP-------------------------------AN---------- 371 (636)
T ss_dssp EEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECC-------------------------------TT----------
T ss_pred EEECCCCCCCCCHH-HHCCCCCCCEEECCCCCCCCCC-------------------------------HH----------
T ss_conf 89690880705166-6478898898989899403033-------------------------------75----------
Q ss_pred HHCCCHHHHHHCCCC-CCEEECCCCCCCCCCCCCCCCCC--CCCEEECCCCCCCCCCCCCCC-------CCCCCCEEECC
Q ss_conf 731412677602456-66364146655577351138999--998998447856766885335-------65756877768
Q 001782 378 FSMGLNQIYVKNLVN-LNGFGLEYNQLTGPIPHAIGELR--NLQVLDLHHNNLDGHIPESLG-------NLTILNSLDLG 447 (1013)
Q Consensus 378 ~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~L~~N~l~~~~~~~~~-------~l~~L~~L~Ls 447 (1013)
+..+++ |+.|++++|.++ .+|..+...+ +|+.|++++|++.+..|..+. .+++|+.|+++
T Consensus 372 ---------l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls 441 (636)
T 4eco_A 372 ---------FCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS 441 (636)
T ss_dssp ---------SEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECC
T ss_pred ---------HHHHCCCCCEEECCCCCCC-CCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECC
T ss_conf ---------6510236868985298275-446655333457668897748857886524420022011258988889772
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCC-------HHHHHCCCCCEECCCCCCCCC--CCCCCCEEE
Q ss_conf 87246878866446745450110233222348700110000-------013321479810266883435--767774897
Q 001782 448 FNKLRGHVPSSLGNCQNLMLLSVSNNKLTGALPPQILGIVT-------LSILLDLSGNLLTGSIPAEVG--NLKNLVQLG 518 (1013)
Q Consensus 448 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~-------~l~~L~ls~N~l~~~~~~~~~--~l~~L~~L~ 518 (1013)
+|.++...+..+..+++|+.|++++|+++ .+|...+.... .|+.|++++|+++ .+|..+. .+++|+.|+
T Consensus 442 ~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~ 519 (636)
T 4eco_A 442 NNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGID 519 (636)
T ss_dssp SSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEE
T ss_pred CCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCCCCCCCCEEECCCCCCC-CCCHHHHHCCCCCCCEEE
T ss_conf 79668678788715898898989799788-7397884044001221477338989699388-168545344588769898
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 5588788878100004544320012------2632345647000044777857355662356561012464533501057
Q 001782 519 LSENRFSNEIPVSLSACTTLEYLYM------EGNSLTGSIPLALKTLKSIKELDLSRNNLSGQIPEFLENLSFLEYLNLS 592 (1013)
Q Consensus 519 Ls~N~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~ 592 (1013)
|++|.+.+ +|..+..+++|+.|+| ++|++.+.+|..+..+++|+.|+|++|+++ .+|..+. ++|+.|+++
T Consensus 520 Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls 595 (636)
T 4eco_A 520 LSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIK 595 (636)
T ss_dssp CCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECC
T ss_pred CCCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCC-CCCHHHH--CCCCEEECC
T ss_conf 98998877-6823530888787889888665667312127377856998788989899477-0597683--867899876
Q ss_pred CCCCCCCCCCCC---CCCCCCCEEEECCCCCCCCC
Q ss_conf 863878789997---44787610150886777898
Q 001782 593 YNHLEGEVPRRG---VFSNKTRFYFTGNKRLCGGL 624 (1013)
Q Consensus 593 ~N~l~~~~~~~~---~~~~~~~~~~~~n~~~c~~~ 624 (1013)
+|++.+...... .......+.+......|+|+
T Consensus 596 ~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~ 630 (636)
T 4eco_A 596 DNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCD 630 (636)
T ss_dssp SCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCG
T ss_pred CCCCCCCCHHHCCHHHHCCCCEEECCCCCCCCCCC
T ss_conf 99876336786201122661003437754347986
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=482.37 Aligned_cols=522 Identities=21% Similarity=0.199 Sum_probs=429.5
Q ss_pred CEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC-CCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf 50589996898981699950135554567423478777774340158765469-96547764214985168865447998
Q 001782 64 CQWTGVTCGHRHQRVTVLDLSNRSIEGILSPYVGNLSFLRFINFANNGFSGEI-PGEIGRLFRLETLILANNSFSGKIPS 142 (1013)
Q Consensus 64 c~w~gv~c~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~ls~n~l~~~~p~ 142 (1013)
|.|+.|.+ ...+++.|||+++.+++..+..+..+++|++|+|++|...+.+ |.+|+++++|++|+|++|.+++..|.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC--CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHH
T ss_conf 99777898--9998688888778678329667766213708867899774441977853787788887989958531976
Q ss_pred CCCCCCCCCEECCCCCCCCCCCCCC-CCCCCCCCCCEECCCCCCCCCCC-CCCCCCCCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf 4003778824213565334878983-23233322403202433454488-886688875556631652478899832445
Q 001782 143 NLSRCSNLINFHARGNNLVGQIPPD-IGYSWLKLEFLSLRDNLLAGQLA-PSIGNISNLQVLSIGENRLSGRLPDSLGQL 220 (1013)
Q Consensus 143 ~l~~l~~L~~L~l~~n~~~~~~p~~-~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 220 (1013)
.++.+++|++|++++|.+.+.+|.. .+..+++|++|++++|.+++..+ ..++++++|++|++++|.+++..+..+..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHHHCCCC
T ss_conf 71578665870176788973404676455667999888987864232566557638898989898984776678875355
Q ss_pred --CCCCEEECCCCCCCCCCCCHHCCCCC------CCEEECCCCCCCCCCCCCCCCC--CCCCCEEEEEE---------CC
Q ss_conf --64346554334346789500016772------0300123776678888776889--99876799440---------33
Q 001782 221 --RSLYYLSISENAFSGMFPSSIFNISS------LESISLLGNRLEGSLPVNIGFS--LPNLENLSVRQ---------NN 281 (1013)
Q Consensus 221 --~~L~~L~L~~n~l~~~~~~~~~~l~~------L~~L~L~~n~l~~~lp~~~~~~--l~~L~~L~l~~---------n~ 281 (1013)
++|+.|+++.|.+.+..|..+..+++ |+.|++++|.+.+.++..+... ...++.+.++. +.
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred CCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCC
T ss_conf 67750357897886665545533223772235740079657886865677888764274410011212122346644456
Q ss_pred CCCCCCCCCCCC--CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 645489988889--999669742572433356333488874300134576888888981344310345411120454433
Q 001782 282 YTGSLPHSLSNA--SNLRLLDFSLNHFSGQVKIDFNRLPNLFRLSFSKNNLGTGAIGDLDFIAHLTNCSKLEALGLDTNI 359 (1013)
Q Consensus 282 l~~~~~~~l~~l--~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~~~~L~~l~l~~n~ 359 (1013)
+.+.....|..+ ++|+.|++++|.+.+..+..|..+++|+.|++++|++..... ..+..+++|+.|+++.|.
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~------~~~~~l~~L~~L~Ls~N~ 325 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD------EAFYGLDNLQVLNLSYNL 325 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT------TTTTTCSSCCEEEEESCC
T ss_pred CCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCH------HHHCCCCCCCEEECCCCC
T ss_conf 68898556525554786189897994551586345258999999897981898796------883688899989898997
Q ss_pred CCCCCCHHHHCCHHHHHHHHCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 48966201101103477873141267760245666364146655577351138999998998447856766885335657
Q 001782 360 FGGVLPLSIANLSSTIILFSMGLNQIYVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQVLDLHHNNLDGHIPESLGNLT 439 (1013)
Q Consensus 360 ~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 439 (1013)
+.+..|..+. .+++|+.|++++|.+.+..+..|..+++|+.|++++|.+++.. .++
T Consensus 326 l~~~~~~~~~-------------------~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-----~~~ 381 (844)
T 3j0a_A 326 LGELYSSNFY-------------------GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH-----FIP 381 (844)
T ss_dssp CSCCCSCSCS-------------------SCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS-----SCC
T ss_pred CCCCCHHHHC-------------------CCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCC-----CCC
T ss_conf 8851878846-------------------8999998989899877628666137888999889899778616-----889
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCHHHHHCCCCCEECCCCCC-CCCCCCCCCEEE
Q ss_conf 5687776887246878866446745450110233222348700110000013321479810266883-435767774897
Q 001782 440 ILNSLDLGFNKLRGHVPSSLGNCQNLMLLSVSNNKLTGALPPQILGIVTLSILLDLSGNLLTGSIPA-EVGNLKNLVQLG 518 (1013)
Q Consensus 440 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~ls~N~l~~~~~~-~~~~l~~L~~L~ 518 (1013)
+|+.|++++|+++ .+|.. ..+++.|++++|++++.........++.|+.|++++|++++..+. .+..+++|+.|+
T Consensus 382 ~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~ 457 (844)
T 3j0a_A 382 SIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLF 457 (844)
T ss_dssp SCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCE
T ss_pred CCCHHCCCCCCCC-CCCCC---CCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 8232005899723-14554---5543122145675345755666512776666667787125555433356687310024
Q ss_pred CCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 5588788-----87810000454432001226323456470000447778573556623565610124645335010578
Q 001782 519 LSENRFS-----NEIPVSLSACTTLEYLYMEGNSLTGSIPLALKTLKSIKELDLSRNNLSGQIPEFLENLSFLEYLNLSY 593 (1013)
Q Consensus 519 Ls~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~ 593 (1013)
+++|.+. +..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+|++..+..+. ++|+.|++++
T Consensus 458 Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~ 535 (844)
T 3j0a_A 458 LGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISR 535 (844)
T ss_dssp EESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEE
T ss_pred CCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCC
T ss_conf 77773644101355355544755365777889856553955704501221569999978745710110--0455888988
Q ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 63878789997447876101508867778987
Q 001782 594 NHLEGEVPRRGVFSNKTRFYFTGNKRLCGGLD 625 (1013)
Q Consensus 594 N~l~~~~~~~~~~~~~~~~~~~~n~~~c~~~~ 625 (1013)
|++++.+|. .+..+..+.+.+|||.|+|..
T Consensus 536 N~l~~~~~~--~~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 536 NQLLAPNPD--VFVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp ECCCCCCSC--CCSSCCEEEEEEECCCCSSSC
T ss_pred CCCCCCCHH--HHCCCCEEEECCCCCCCCCCC
T ss_conf 847888966--837768899319970253661
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=476.96 Aligned_cols=526 Identities=22% Similarity=0.236 Sum_probs=275.2
Q ss_pred EEEEEECCC---------CCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCC
Q ss_conf 589996898---------98169995013555456742347877777434015876546996547764214985168865
Q 001782 66 WTGVTCGHR---------HQRVTVLDLSNRSIEGILSPYVGNLSFLRFINFANNGFSGEIPGEIGRLFRLETLILANNSF 136 (1013)
Q Consensus 66 w~gv~c~~~---------~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l 136 (1013)
+..|.|... ...++.||++++.+++..+..++.+++|++|+|++|.+++..|.+|+.+++|++|+|++|.+
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCC
T ss_conf 72377777980628677898675898158734717966725676652897889835524851136843367644889856
Q ss_pred CCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf 44799840037788242135653348789832323332240320243345448888668887555663165247889983
Q 001782 137 SGKIPSNLSRCSNLINFHARGNNLVGQIPPDIGYSWLKLEFLSLRDNLLAGQLAPSIGNISNLQVLSIGENRLSGRLPDS 216 (1013)
Q Consensus 137 ~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~ 216 (1013)
++..|..++++++|++|++++|.+.+..|.. +..+++|++|++++|.+++...+.+..+++|++|++++|.+++..|..
T Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 172 (606)
T 3t6q_A 94 IFMAETALSGPKALKHLFFIQTGISSIDFIP-LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172 (606)
T ss_dssp SEECTTTTSSCTTCCEEECTTSCCSCGGGSC-CTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHH
T ss_pred CCCCHHHHCCCCCCCEEECCCCCCCCCCCCH-HCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHH
T ss_conf 5458655234421537652126766578101-223782238988798341147654568765687776568445549656
Q ss_pred CCCCCCCC--EEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC-----CCCCCC
Q ss_conf 24456434--65543343467895000167720300123776678888776889998767994403364-----548998
Q 001782 217 LGQLRSLY--YLSISENAFSGMFPSSIFNISSLESISLLGNRLEGSLPVNIGFSLPNLENLSVRQNNYT-----GSLPHS 289 (1013)
Q Consensus 217 ~~~l~~L~--~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~-----~~~~~~ 289 (1013)
|+.+++|+ .|++++|.+++..|..+. ..+|+.|++++|... +..+. .+.++....+..+.+. ...+..
T Consensus 173 ~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~~~---~~~~~-~l~~~~l~~l~~~~~~~~~~~~i~~~~ 247 (606)
T 3t6q_A 173 MSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQNL---LVIFK-GLKNSTIQSLWLGTFEDMDDEDISPAV 247 (606)
T ss_dssp HHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCSCH---HHHHH-HTTTCEEEEEECCCCTTSCCCCCCGGG
T ss_pred HHHHCCCCEEEEECCCCCCCCCCHHHHH-HCCCCCCCCCCCHHH---HHHHH-HCCCCCHHHEECHHHCCCCCCCCCHHH
T ss_conf 3322156403896679814754866730-010013556772667---77765-133564422002011026412268667
Q ss_pred CCCCC--CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 88899--9966974257243335633348887430013457688888898134431034541112045443348966201
Q 001782 290 LSNAS--NLRLLDFSLNHFSGQVKIDFNRLPNLFRLSFSKNNLGTGAIGDLDFIAHLTNCSKLEALGLDTNIFGGVLPLS 367 (1013)
Q Consensus 290 l~~l~--~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~p~~ 367 (1013)
+..+. +|+.|++++|.+++..+..|..+++|+.|++++|.+...+ ..+..+++|+.++++.|.+.+..|..
T Consensus 248 ~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp-------~~l~~l~~L~~L~l~~n~l~~~~~~~ 320 (606)
T 3t6q_A 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELP-------SGLVGLSTLKKLVLSANKFENLCQIS 320 (606)
T ss_dssp GGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCC-------SSCCSCTTCCEEECTTCCCSBGGGGC
T ss_pred HCHHHCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCCCCC-------HHHCCCCCCCEEECCCCCCCCCCHHH
T ss_conf 43032075059994457658557777445667888956288267778-------21416546888977168768676023
Q ss_pred HHCCHHHHHHHHCCCHHHHHHCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCC--CCCCCCCCCCCEE
Q ss_conf 101103477873141267760245666364146655577351-1389999989984478567668--8533565756877
Q 001782 368 IANLSSTIILFSMGLNQIYVKNLVNLNGFGLEYNQLTGPIPH-AIGELRNLQVLDLHHNNLDGHI--PESLGNLTILNSL 444 (1013)
Q Consensus 368 ~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L 444 (1013)
+ ..+++|+.|++++|.+.+.++. .+..+++|+.|++++|.+.+.. +..+..+++|+.|
T Consensus 321 ~-------------------~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L 381 (606)
T 3t6q_A 321 A-------------------SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSL 381 (606)
T ss_dssp G-------------------GGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEE
T ss_pred H-------------------HCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEE
T ss_conf 3-------------------015768988898997444346245506675898878899666456752210567888989
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCHHHHHCCCCCEECCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 76887246878866446745450110233222348700110000013321479810266883435767774897558878
Q 001782 445 DLGFNKLRGHVPSSLGNCQNLMLLSVSNNKLTGALPPQILGIVTLSILLDLSGNLLTGSIPAEVGNLKNLVQLGLSENRF 524 (1013)
Q Consensus 445 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 524 (1013)
++++|.+.+..+..+..+++|+.|++++|++.+..+...+..++.|+.|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 382 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 461 (606)
T 3t6q_A 382 NLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461 (606)
T ss_dssp ECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBC
T ss_pred ECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCC
T ss_conf 89899677578887347745776878888677756521241765588898989855776877873788788898989988
Q ss_pred CCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 887---81000045443200122632345647000044777857355662356561012464533501057863878789
Q 001782 525 SNE---IPVSLSACTTLEYLYMEGNSLTGSIPLALKTLKSIKELDLSRNNLSGQIPEFLENLSFLEYLNLSYNHLEGEVP 601 (1013)
Q Consensus 525 ~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 601 (1013)
.+. .+..+..+++|+.|++++|.+++..|..|..+++|+.|+|++|++++..|..+..++.| .|++++|++++.+|
T Consensus 462 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~ 540 (606)
T 3t6q_A 462 PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP 540 (606)
T ss_dssp GGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCG
T ss_pred CCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCH
T ss_conf 85434543124048876688799996670686463265678889898980686896684756651-89876894142687
Q ss_pred CC-CCCCCCCCEEEECCCCCCCCC
Q ss_conf 99-744787610150886777898
Q 001782 602 RR-GVFSNKTRFYFTGNKRLCGGL 624 (1013)
Q Consensus 602 ~~-~~~~~~~~~~~~~n~~~c~~~ 624 (1013)
.. ..++.++.+.+.+|||.|++.
T Consensus 541 ~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 541 SLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp GGHHHHHTSSEEECTTCCEECSGG
T ss_pred HHCCCCCCCCEEECCCCCCCCCCC
T ss_conf 662567787889677998616677
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=475.41 Aligned_cols=488 Identities=20% Similarity=0.256 Sum_probs=246.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCC-----CC--CEE------------EEEEECCCCCEEEEEEECCCCCCCCC
Q ss_conf 998879999999984479999998989999-----98--505------------89996898981699950135554567
Q 001782 32 SNETDRLALLAIKSQLQDPLGVTSSWNNSM-----NL--CQW------------TGVTCGHRHQRVTVLDLSNRSIEGIL 92 (1013)
Q Consensus 32 ~~~~~~~~Ll~~k~~~~~~~~~~~sw~~~~-----~~--c~w------------~gv~c~~~~~~v~~l~l~~~~l~~~~ 92 (1013)
+..+|+.||++||+++.+| +|+.+. +| |+| .||+|+. .++|+.|+|+++++.|.+
T Consensus 266 ~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~i 339 (876)
T 4ecn_A 266 EYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRV 339 (876)
T ss_dssp HHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEEE
T ss_pred CCHHHHHHHHHHHHHCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC-CCCEEEEECCCCCCCCCC
T ss_conf 6317899999999973799-----9886898653367764034666545335768428369-997989987247899948
Q ss_pred CCCCCCCCCCCEEEE-CCCCCCCCCCCCCCCC------------------------------------------------
Q ss_conf 423478777774340-1587654699654776------------------------------------------------
Q 001782 93 SPYVGNLSFLRFINF-ANNGFSGEIPGEIGRL------------------------------------------------ 123 (1013)
Q Consensus 93 ~~~l~~l~~L~~L~L-~~n~l~~~~p~~~~~l------------------------------------------------ 123 (1013)
|+.+++|++|++|+| ++|.++|..|..-...
T Consensus 340 p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~ 419 (876)
T 4ecn_A 340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419 (876)
T ss_dssp CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCC
T ss_pred CHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 55774155562843012563356664222344544115678887776666542037511156787877650733243222
Q ss_pred ---CCCEEEECCC--CCCCCCCCCCCCCCCCCCEECCCCCCCCC-CCCCCCCCCCCCCCCEECCCCCCCCCCCCCCC--C
Q ss_conf ---4214985168--86544799840037788242135653348-78983232333224032024334544888866--8
Q 001782 124 ---FRLETLILAN--NSFSGKIPSNLSRCSNLINFHARGNNLVG-QIPPDIGYSWLKLEFLSLRDNLLAGQLAPSIG--N 195 (1013)
Q Consensus 124 ---~~L~~L~ls~--n~l~~~~p~~l~~l~~L~~L~l~~n~~~~-~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~ 195 (1013)
..++.+.+.. |.+++ +|..++++++|++|++++|.+++ .+|.... ..+.|...+.+|..++ +
T Consensus 420 ~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~---------~~s~n~~~g~iP~~l~f~~ 489 (876)
T 4ecn_A 420 DSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWE---------DANSDYAKQYENEELSWSN 489 (876)
T ss_dssp CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCS---------CTTSHHHHHHTTSCCCGGG
T ss_pred CCCCCHHHCEECCCCCCCCC-HHHHHHCCCCCCEEECCCCCCCCCCCCCCCC---------CCCCCCCCCCCCHHHHHCC
T ss_conf 35442312040566676152-1188756999878979688678874653223---------3222222445874440255
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCC-CCC-CCCCHHCCCC-------CCCEEECCCCCCCCCCCC--C
Q ss_conf 8875556631652478899832445643465543343-467-8950001677-------203001237766788887--7
Q 001782 196 ISNLQVLSIGENRLSGRLPDSLGQLRSLYYLSISENA-FSG-MFPSSIFNIS-------SLESISLLGNRLEGSLPV--N 264 (1013)
Q Consensus 196 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~l~-------~L~~L~L~~n~l~~~lp~--~ 264 (1013)
+++|++|++++|.+.+.+|..|+++++|+.|++++|+ +++ .+|..+..++ +|+.|+|++|+++ .+|. .
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~ 568 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASAS 568 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHH
T ss_pred CCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCC-CCCCHHH
T ss_conf 999778987189887527387737999899989689876566461778752330155688319982289477-6187235
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 6889998767994403364548998888999966974257243335633348887-430013457688888898134431
Q 001782 265 IGFSLPNLENLSVRQNNYTGSLPHSLSNASNLRLLDFSLNHFSGQVKIDFNRLPN-LFRLSFSKNNLGTGAIGDLDFIAH 343 (1013)
Q Consensus 265 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~~~~ 343 (1013)
+. .+++|+.|++++|+++ .+| .|..+++|+.|++++|+++ ..+..+..+++ |+.|++++|.
T Consensus 569 l~-~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~-------------- 630 (876)
T 4ecn_A 569 LQ-KMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK-------------- 630 (876)
T ss_dssp HT-TCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC--------------
T ss_pred HH-CCCCCCEEECCCCCCC-CCH-HHCCCCCCEEEECCCCCCC-CCHHHHHHCCCCCCEEECCCCC--------------
T ss_conf 51-5898898989799825-621-2247985007987187125-0358775251149899984997--------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCC--CCEEE
Q ss_conf 0345411120454433489662011011034778731412677602456663641466555773511389999--98998
Q 001782 344 LTNCSKLEALGLDTNIFGGVLPLSIANLSSTIILFSMGLNQIYVKNLVNLNGFGLEYNQLTGPIPHAIGELRN--LQVLD 421 (1013)
Q Consensus 344 l~~~~~L~~l~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~--L~~L~ 421 (1013)
++ .+|..+..++. |+.|+
T Consensus 631 -----------------------------------------------------------L~-~lp~~~~~~~~~~L~~L~ 650 (876)
T 4ecn_A 631 -----------------------------------------------------------LK-YIPNIFNAKSVYVMGSVD 650 (876)
T ss_dssp -----------------------------------------------------------CC-SCCSCCCTTCSSCEEEEE
T ss_pred -----------------------------------------------------------CC-CCCHHHHCCCCCCCCEEE
T ss_conf -----------------------------------------------------------87-476445225567778897
Q ss_pred CCCCCCCCCCCCCC---C--CCCCCCEEECCCCCCCCCCCCCC-CCCCCCCEEECCCCCCCCCCCCHHHCCC-------C
Q ss_conf 44785676688533---5--65756877768872468788664-4674545011023322234870011000-------0
Q 001782 422 LHHNNLDGHIPESL---G--NLTILNSLDLGFNKLRGHVPSSL-GNCQNLMLLSVSNNKLTGALPPQILGIV-------T 488 (1013)
Q Consensus 422 L~~N~l~~~~~~~~---~--~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~-------~ 488 (1013)
+++|++.+.+|... . ..++|+.|++++|.++ .+|..+ ..+++|+.|++++|+++ .+|...+... +
T Consensus 651 Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~ 728 (876)
T 4ecn_A 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTY 728 (876)
T ss_dssp CCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGG
T ss_pred CCCCCCCCCCCCCHHHHCCCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCCCCC
T ss_conf 708847886432000000135797688983199688-659788713898899989899688-549678455533432148
Q ss_pred HHHHHCCCCCEECCCCCCCCC--CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCC
Q ss_conf 013321479810266883435--767774897558878887810000454432001226------323456470000447
Q 001782 489 LSILLDLSGNLLTGSIPAEVG--NLKNLVQLGLSENRFSNEIPVSLSACTTLEYLYMEG------NSLTGSIPLALKTLK 560 (1013)
Q Consensus 489 ~l~~L~ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~------N~l~~~~~~~~~~l~ 560 (1013)
.|+.|++++|+++ .+|..+. .+++|+.|+|++|.+.+ +|..+..+++|+.|+|++ |++.+.+|..+..++
T Consensus 729 ~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~ 806 (876)
T 4ecn_A 729 LLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806 (876)
T ss_dssp GCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCS
T ss_pred CCCEEECCCCCCC-CCHHHHHHCCCCCCCEEEECCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCC
T ss_conf 7158988899786-65277624427986989908997876-105661599988998879977665632444868883699
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCCEEEECCCCCC
Q ss_conf 77857355662356561012464533501057863878789997-44787610150886777
Q 001782 561 SIKELDLSRNNLSGQIPEFLENLSFLEYLNLSYNHLEGEVPRRG-VFSNKTRFYFTGNKRLC 621 (1013)
Q Consensus 561 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~-~~~~~~~~~~~~n~~~c 621 (1013)
+|+.|+|++|++ +.+|..+. ++|+.|++++|++....+... .........+..|++.+
T Consensus 807 ~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 807 SLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865 (876)
T ss_dssp SCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred CCCEEECCCCCC-CCCCHHHC--CCCCEEECCCCCCCCCCHHHCCCCCCCHHEEECCCCCCC
T ss_conf 878898879978-74087662--877889997998881176772565423110346888655
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=467.17 Aligned_cols=528 Identities=20% Similarity=0.197 Sum_probs=275.1
Q ss_pred CCCCEEE----EEEECCC---------CCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCE
Q ss_conf 9985058----9996898---------98169995013555456742347877777434015876546996547764214
Q 001782 61 MNLCQWT----GVTCGHR---------HQRVTVLDLSNRSIEGILSPYVGNLSFLRFINFANNGFSGEIPGEIGRLFRLE 127 (1013)
Q Consensus 61 ~~~c~w~----gv~c~~~---------~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 127 (1013)
.++|.|. .|.|... ..+++.||++++.+++..+..+.++++|++|+|++|.+++..|.+|+++++|+
T Consensus 4 ~~~c~~~~~~~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~ 83 (606)
T 3vq2_A 4 LNPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS 83 (606)
T ss_dssp --CCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CCCCEECCCCCCEECCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCC
T ss_conf 77753217897057468884518988888767887888975773754555776674886887736643977730601068
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC-CCCCCCCCCCCCCEEEECC
Q ss_conf 985168865447998400377882421356533487898323233322403202433454-4888866888755566316
Q 001782 128 TLILANNSFSGKIPSNLSRCSNLINFHARGNNLVGQIPPDIGYSWLKLEFLSLRDNLLAG-QLAPSIGNISNLQVLSIGE 206 (1013)
Q Consensus 128 ~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~ 206 (1013)
+|+|++|.+++..|..++++++|++|++++|.+.+..|.. +..+++|++|++++|.+++ .+|..++++++|++|++++
T Consensus 84 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~ 162 (606)
T 3vq2_A 84 NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFP-IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162 (606)
T ss_dssp EEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSC-CTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCS
T ss_pred EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECCC
T ss_conf 8678798563048522078653788870377555445113-489887798968788523253068673267777887668
Q ss_pred CCCCCCCCCCCCCCCCCC----EEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCCEEEEEECC
Q ss_conf 524788998324456434----65543343467895000167720300123776678-8887768899987679944033
Q 001782 207 NRLSGRLPDSLGQLRSLY----YLSISENAFSGMFPSSIFNISSLESISLLGNRLEG-SLPVNIGFSLPNLENLSVRQNN 281 (1013)
Q Consensus 207 n~l~~~~p~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~lp~~~~~~l~~L~~L~l~~n~ 281 (1013)
|.+++..|..++.+++|+ .|++++|.+++..+..+... +|+.|++++|.+.+ ..|..+. .+++++.+++..+.
T Consensus 163 n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~-~l~~L~~l~l~~~~ 240 (606)
T 3vq2_A 163 NYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQ-NLAGLHVHRLILGE 240 (606)
T ss_dssp SCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHH-TTTTCEEEEEEEEC
T ss_pred CCCEECCHHHHHHHHCCCCCCCEEECCCCCCCEECCCCCCCC-EEEEEECCCCCCCHHHHHHHHC-CCCCCCCCCCCCCC
T ss_conf 853105733412120342002430046897532571105676-0433524678561667788860-26656523141111
Q ss_pred CCCC------CCCCCCCCC--CCCEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCC
Q ss_conf 6454------899888899--9966974-257243335633348887430013457688888898134431034541112
Q 001782 282 YTGS------LPHSLSNAS--NLRLLDF-SLNHFSGQVKIDFNRLPNLFRLSFSKNNLGTGAIGDLDFIAHLTNCSKLEA 352 (1013)
Q Consensus 282 l~~~------~~~~l~~l~--~L~~L~l-~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~~~~L~~ 352 (1013)
+... .+..+..+. +++.+++ ..|.+.+..+. +..+++|+.|++++|.+...+ .+..+++|+.
T Consensus 241 ~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~--------~l~~~~~L~~ 311 (606)
T 3vq2_A 241 FKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE--------DVPKHFKWQS 311 (606)
T ss_dssp CTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC--------CCCTTCCCSE
T ss_pred CCCCCCCCCCCHHHHHHHHHCCHHHEECCCCCCCCCCCCC-CCCCCCCCEEEECCCCCHHHH--------HCCCCCCCCE
T ss_conf 0367741026817766665434745012366555543222-354887898771476604435--------4334011778
Q ss_pred CCCCCCCCCCCCCHHHHCCHHHHHHHHCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC--
Q ss_conf 045443348966201101103477873141267760245666364146655577351138999998998447856766--
Q 001782 353 LGLDTNIFGGVLPLSIANLSSTIILFSMGLNQIYVKNLVNLNGFGLEYNQLTGPIPHAIGELRNLQVLDLHHNNLDGH-- 430 (1013)
Q Consensus 353 l~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-- 430 (1013)
+++..|.+ +.+|. + .+++|+.+++++|...+.. .+..+++|+.|++++|++++.
T Consensus 312 L~l~~n~l-~~lp~-~--------------------~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~ 367 (606)
T 3vq2_A 312 LSIIRCQL-KQFPT-L--------------------DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGC 367 (606)
T ss_dssp EEEESCCC-SSCCC-C--------------------CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEE
T ss_pred EECCCCCC-CCCCC-C--------------------CCCCCCEEECCCCCCCCCH--HHCCCCCCCEEECCCCCCCCCCC
T ss_conf 97646667-65466-7--------------------8875564454478685310--00248988879775873687752
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCHHHHHCCCCCEECCCCCCCCCC
Q ss_conf 88533565756877768872468788664467454501102332223487001100000133214798102668834357
Q 001782 431 IPESLGNLTILNSLDLGFNKLRGHVPSSLGNCQNLMLLSVSNNKLTGALPPQILGIVTLSILLDLSGNLLTGSIPAEVGN 510 (1013)
Q Consensus 431 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~ls~N~l~~~~~~~~~~ 510 (1013)
.+..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++.+..+...+..++.|+.|++++|.+++..|..+..
T Consensus 368 ~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 446 (606)
T 3vq2_A 368 CSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG 446 (606)
T ss_dssp CCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT
T ss_pred HHHHHCCCCCCCEEECCCCCCC-CCHHHCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCC
T ss_conf 0122146775548678899530-005540688888965898870587537645646213788989689787433555347
Q ss_pred CCCCCEEECCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 6777489755887888-781000045443200122632345647000044777857355662356561012464533501
Q 001782 511 LKNLVQLGLSENRFSN-EIPVSLSACTTLEYLYMEGNSLTGSIPLALKTLKSIKELDLSRNNLSGQIPEFLENLSFLEYL 589 (1013)
Q Consensus 511 l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 589 (1013)
+++|+.|++++|.+.+ ..|..+..+++|+.|++++|++++..|..+..+++|+.|++++|++++..|..+..+++|+.|
T Consensus 447 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 526 (606)
T 3vq2_A 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTL 526 (606)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEE
T ss_pred CCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEE
T ss_conf 78789898989837985467760457889989898885776486561546468989898995787487770688768988
Q ss_pred ECCCCCCCCCCCCCCCCC-CCCCEEEECCCCCCCCCC
Q ss_conf 057863878789997447-876101508867778987
Q 001782 590 NLSYNHLEGEVPRRGVFS-NKTRFYFTGNKRLCGGLD 625 (1013)
Q Consensus 590 ~l~~N~l~~~~~~~~~~~-~~~~~~~~~n~~~c~~~~ 625 (1013)
++++|+++..++....++ .++.+.+.+|||.|+++.
T Consensus 527 ~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 527 DCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp ECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred ECCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCC
T ss_conf 8989837666876752102174887628986647764
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=466.83 Aligned_cols=518 Identities=20% Similarity=0.203 Sum_probs=265.2
Q ss_pred CEEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 81699950135554567423478777774340158765469965477642149851688654479984003778824213
Q 001782 76 QRVTVLDLSNRSIEGILSPYVGNLSFLRFINFANNGFSGEIPGEIGRLFRLETLILANNSFSGKIPSNLSRCSNLINFHA 155 (1013)
Q Consensus 76 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 155 (1013)
.+++.||++++.+.+..+..++.+++|++|+|++|.+++..+..|+.+++|++|++++|.+++..|..++++++|++|++
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 128 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEEC
T ss_conf 76758878899648569778740667688889998567568545303888898989899668539667415678888989
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCC--CCCCCCEEEECCCCCCCCCCCCCCCC-------------
Q ss_conf 565334878983232333224032024334544888866--88875556631652478899832445-------------
Q 001782 156 RGNNLVGQIPPDIGYSWLKLEFLSLRDNLLAGQLAPSIG--NISNLQVLSIGENRLSGRLPDSLGQL------------- 220 (1013)
Q Consensus 156 ~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~p~~~~~l------------- 220 (1013)
++|.+.+..|..+ ..+++|++|++++|.+++..+..++ .+++|+.|++++|.+++..|..+..+
T Consensus 129 s~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l 207 (680)
T 1ziw_A 129 SHNGLSSTKLGTQ-VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207 (680)
T ss_dssp CSSCCSCCCCCSS-SCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCC
T ss_pred CCCCCCCCCCHHH-CCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 8995246672111-245567779745884365297886244666321798889825655815553223445543056646
Q ss_pred --------------CCCCEEECCCCCCCCCCCCHHCCCCC--CCEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf --------------64346554334346789500016772--03001237766788887768899987679944033645
Q 001782 221 --------------RSLYYLSISENAFSGMFPSSIFNISS--LESISLLGNRLEGSLPVNIGFSLPNLENLSVRQNNYTG 284 (1013)
Q Consensus 221 --------------~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~~~lp~~~~~~l~~L~~L~l~~n~l~~ 284 (1013)
++|+.|++++|.+++..|..+..++. |+.|++++|++.+..|..+. .+++|+.|++++|++++
T Consensus 208 ~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~ 286 (680)
T 1ziw_A 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA-WLPQLEYFFLEYNNIQH 286 (680)
T ss_dssp HHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSCCBSE
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCCCCCC-CCCCCCEEECCCCCCCC
T ss_conf 80567778777531510088745774364686675146767788877878876756802116-74105685577885676
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCC
Q ss_conf 489988889999669742572433---------35633348887430013457688888898134431034541112045
Q 001782 285 SLPHSLSNASNLRLLDFSLNHFSG---------QVKIDFNRLPNLFRLSFSKNNLGTGAIGDLDFIAHLTNCSKLEALGL 355 (1013)
Q Consensus 285 ~~~~~l~~l~~L~~L~l~~N~l~~---------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~~~~L~~l~l 355 (1013)
..+..|.++++|+.|++++|...+ .....|..+++|+.|++++|.+...... .+..+++|+.+++
T Consensus 287 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~L 360 (680)
T 1ziw_A 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN------MFTGLINLKYLSL 360 (680)
T ss_dssp ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTT------TTTTCTTCCEEEC
T ss_pred CCHHHHCCCCCCCEEECCCHHHHCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHH------HHCCCCCCCEEEC
T ss_conf 5865626788855773633132133333554543865624677788887989826878855------7406568728988
Q ss_pred CCCCCCCCC--CHHHHCCH--HHHHH--H---HCCCHHHHHHCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCC
Q ss_conf 443348966--20110110--34778--7---314126776024566636414665557735-11389999989984478
Q 001782 356 DTNIFGGVL--PLSIANLS--STIIL--F---SMGLNQIYVKNLVNLNGFGLEYNQLTGPIP-HAIGELRNLQVLDLHHN 425 (1013)
Q Consensus 356 ~~n~~~~~~--p~~~~~l~--~~~~~--~---~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N 425 (1013)
+.|.+.... +..+..+. ++..+ . ...+....+..+++|+.|++++|.+.+.+| ..|.++++|+.|++++|
T Consensus 361 s~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n 440 (680)
T 1ziw_A 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440 (680)
T ss_dssp TTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSC
T ss_pred CCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCC
T ss_conf 79801443235322024556867668899997776775442077888888677875754357553257546127844899
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCC--CCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCHHHHHCCCCCEECCC
Q ss_conf 567668853356575687776887246--878866446745450110233222348700110000013321479810266
Q 001782 426 NLDGHIPESLGNLTILNSLDLGFNKLR--GHVPSSLGNCQNLMLLSVSNNKLTGALPPQILGIVTLSILLDLSGNLLTGS 503 (1013)
Q Consensus 426 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~ls~N~l~~~ 503 (1013)
++.+..+..|..++.|+.|++++|.+. +..|..+..+++|+.|++++|+++ .++...+..++.|+.|++++|++++.
T Consensus 441 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~~ 519 (680)
T 1ziw_A 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA-NINDDMLEGLEKLEILDLQHNNLARL 519 (680)
T ss_dssp SEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCGGG
T ss_pred CCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCEEECCCCCCCCC
T ss_conf 75422764550075431011014644225667764555787899989999877-67944634553468885889973000
Q ss_pred CC--------CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 88--------3435767774897558878887810000454432001226323456470000447778573556623565
Q 001782 504 IP--------AEVGNLKNLVQLGLSENRFSNEIPVSLSACTTLEYLYMEGNSLTGSIPLALKTLKSIKELDLSRNNLSGQ 575 (1013)
Q Consensus 504 ~~--------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 575 (1013)
.+ ..+..+++|+.|+|++|.+....+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++.
T Consensus 520 ~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~ 599 (680)
T 1ziw_A 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 599 (680)
T ss_dssp GSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBC
T ss_pred CHHHCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC
T ss_conf 00004677414233799888888999978877977734666752238999977767976837898888898999968705
Q ss_pred CCCCCC-CCCCCCEEECCCCCCCCCCCC
Q ss_conf 610124-645335010578638787899
Q 001782 576 IPEFLE-NLSFLEYLNLSYNHLEGEVPR 602 (1013)
Q Consensus 576 ~~~~~~-~l~~L~~L~l~~N~l~~~~~~ 602 (1013)
.+..+. .+++|+.+++++|++.|.++.
T Consensus 600 ~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 600 EKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CHHHHCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 9668301146657798318970257766
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=464.86 Aligned_cols=498 Identities=20% Similarity=0.186 Sum_probs=316.3
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 89816999501355545674234787777743401587654699654776421498516886544799840037788242
Q 001782 74 RHQRVTVLDLSNRSIEGILSPYVGNLSFLRFINFANNGFSGEIPGEIGRLFRLETLILANNSFSGKIPSNLSRCSNLINF 153 (1013)
Q Consensus 74 ~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L 153 (1013)
...+++.|+++++.+.+..+..++.+++|++|+|++|.+++..|..|+.+++|++|++++|.+++..|..++++++|++|
T Consensus 55 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L 134 (606)
T 3t6q_A 55 RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESL 134 (606)
T ss_dssp TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEE
T ss_pred CCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEE
T ss_conf 67665289788983552485113684336764488985654586552344215376521267665781012237822389
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCC--EEEECCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 13565334878983232333224032024334544888866888755--5663165247889983244564346554334
Q 001782 154 HARGNNLVGQIPPDIGYSWLKLEFLSLRDNLLAGQLAPSIGNISNLQ--VLSIGENRLSGRLPDSLGQLRSLYYLSISEN 231 (1013)
Q Consensus 154 ~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~--~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n 231 (1013)
++++|.+.+..+.... .+++|++|++++|.+++..+..++.+++|+ .|++++|.+.+..|..+.. .+|+.|++++|
T Consensus 135 ~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~ 212 (606)
T 3t6q_A 135 YLGSNHISSIKLPKGF-PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGT 212 (606)
T ss_dssp ECCSSCCCCCCCCTTC-CCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTC
T ss_pred ECCCCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHH-CCCCCCCCCCC
T ss_conf 8879834114765456-876568777656844554965633221564038966798147548667300-10013556772
Q ss_pred CCCCCCCCHHCCCCCCCEEECCCCCCCC----CCCCCCCCCC--CCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 3467895000167720300123776678----8887768899--987679944033645489988889999669742572
Q 001782 232 AFSGMFPSSIFNISSLESISLLGNRLEG----SLPVNIGFSL--PNLENLSVRQNNYTGSLPHSLSNASNLRLLDFSLNH 305 (1013)
Q Consensus 232 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~----~lp~~~~~~l--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~ 305 (1013)
.. .+..+..+..+....+..+.+.+ .++...+..+ .+|+.|++++|.+++..+..|..+++|+.|++++|+
T Consensus 213 ~~---~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 289 (606)
T 3t6q_A 213 QN---LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289 (606)
T ss_dssp SC---HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC
T ss_pred HH---HHHHHHHCCCCCHHHEECHHHCCCCCCCCCHHHHCHHHCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCC
T ss_conf 66---777765133564422002011026412268667430320750599944576585577774456678889562882
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHCCCHHH
Q ss_conf 43335633348887430013457688888898134431034541112045443348966201101103477873141267
Q 001782 306 FSGQVKIDFNRLPNLFRLSFSKNNLGTGAIGDLDFIAHLTNCSKLEALGLDTNIFGGVLPLSIANLSSTIILFSMGLNQI 385 (1013)
Q Consensus 306 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~ 385 (1013)
++. .+..+..+++|++|++++|.+.... +..+..+++|+.++++.|.+.+..|..
T Consensus 290 l~~-lp~~l~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~n~~~~~~~~~------------------ 344 (606)
T 3t6q_A 290 LSE-LPSGLVGLSTLKKLVLSANKFENLC------QISASNFPSLTHLSIKGNTKRLELGTG------------------ 344 (606)
T ss_dssp CSC-CCSSCCSCTTCCEEECTTCCCSBGG------GGCGGGCTTCSEEECCSCSSCCBCCSS------------------
T ss_pred CCC-CCHHHCCCCCCCEEECCCCCCCCCC------HHHHHCCCCCCEEECCCCCCCCCCCHH------------------
T ss_conf 677-7821416546888977168768676------023301576898889899744434624------------------
Q ss_pred HHHCCCCCCEEECCCCCCCCCC--CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCC
Q ss_conf 7602456663641466555773--51138999998998447856766885335657568777688724687886-64467
Q 001782 386 YVKNLVNLNGFGLEYNQLTGPI--PHAIGELRNLQVLDLHHNNLDGHIPESLGNLTILNSLDLGFNKLRGHVPS-SLGNC 462 (1013)
Q Consensus 386 ~~~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l 462 (1013)
.+..+++|+.|++++|.+++.. +..+..+++|+.|++++|++.+..+..|..+++|+.|++++|.+++..+. .+..+
T Consensus 345 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 424 (606)
T 3t6q_A 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL 424 (606)
T ss_dssp TTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTC
T ss_pred HHHCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCC
T ss_conf 55066758988788996664567522105678889898989967757888734774577687888867775652124176
Q ss_pred CCCCEEECCCCCCCCCCCCHHHCCCCHHHHHCCCCCEECCC---CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 45450110233222348700110000013321479810266---883435767774897558878887810000454432
Q 001782 463 QNLMLLSVSNNKLTGALPPQILGIVTLSILLDLSGNLLTGS---IPAEVGNLKNLVQLGLSENRFSNEIPVSLSACTTLE 539 (1013)
Q Consensus 463 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~ls~N~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 539 (1013)
++|+.|++++|.+++..|..+.. ++.|+.|++++|.+++. .+..+..+++|+.|++++|.+.+..|..|..+++|+
T Consensus 425 ~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 503 (606)
T 3t6q_A 425 HLLKVLNLSHSLLDISSEQLFDG-LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMN 503 (606)
T ss_dssp TTCCEEECTTCCCBTTCTTTTTT-CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCCCCCCCHHHHHC-CCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCC
T ss_conf 55888989898557768778737-88788898989988854345431240488766887999966706864632656788
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 0012263234564700004477785735566235656101246453350105786387878999
Q 001782 540 YLYMEGNSLTGSIPLALKTLKSIKELDLSRNNLSGQIPEFLENLSFLEYLNLSYNHLEGEVPRR 603 (1013)
Q Consensus 540 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 603 (1013)
.|+|++|++++..|..+..++.| .|++++|++++..|..+..+++|+.+++++|++.|.++..
T Consensus 504 ~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 566 (606)
T 3t6q_A 504 HVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI 566 (606)
T ss_dssp EEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGH
T ss_pred EEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCH
T ss_conf 89898980686896684756651-8987689414268766256778788967799861667757
Done!