Query 001784
Match_columns 1013
No_of_seqs 634 out of 5230
Neff 8.6
Searched_HMMs 29240
Date Tue Mar 26 16:58:16 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001784.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1079-1083//hhsearch_pdb/001784hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aw0_A HPDK1, 3-phosphoinositi 1.0 1 1 409.9 25.9 246 764-1012 27-278 (311)
2 3v5w_A G-protein coupled recep 1.0 1 1 401.1 27.2 247 765-1012 185-438 (689)
3 4b9d_A Serine/threonine-protei 1.0 1 1 393.6 23.7 242 767-1012 22-270 (350)
4 3ubd_A Ribosomal protein S6 ki 1.0 1 1 392.0 24.4 244 765-1012 20-270 (304)
5 4fie_A Serine/threonine-protei 1.0 1 1 391.7 27.0 239 768-1012 150-394 (423)
6 4fih_A Serine/threonine-protei 1.0 1 1 390.8 25.7 239 768-1012 73-317 (346)
7 3hyh_A Carbon catabolite-derep 1.0 1 1 385.6 25.2 243 766-1012 10-256 (275)
8 1a6q_A Phosphatase 2C; catalyt 1.0 1 1 384.4 22.8 270 75-391 2-296 (382)
9 2j4o_A Mitogen-activated prote 1.0 1 1 383.3 21.2 262 95-389 27-368 (401)
10 2p8e_A PPM1B beta isoform vari 1.0 1 1 382.3 23.2 270 75-391 4-302 (307)
No 1
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=1.00 E-value=1 Score=409.91 Aligned_cols=246 Identities=28% Similarity=0.397 Sum_probs=229.7
Q ss_pred CCCCCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEEEEECCHHCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCC
Q ss_conf 23574573799974257965999999968982999999413011023227799998710010388761115878732578
Q 001784 764 AKVSLTDMEWRKCLYSTDCSEIGLVLLRDSENFLSLKRFSKQKVKCLGKEVQVLKEKNLMKSVSPSACVPQILCTCADSM 843 (1013)
Q Consensus 764 ~~~~~~~~~i~~~Lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~ 843 (1013)
.....++|++.+.||+|+||.||+|.++.+++.||+|++.+.........+.+.+|+.+|+.++|+|+| +++.+|++++
T Consensus 27 ~~~~~~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv-~l~~~~~~~~ 105 (311)
T 4aw0_A 27 RKKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFV-KLYFTFQDDE 105 (311)
T ss_dssp CCCCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBC-CEEEEEECSS
T ss_pred CCCCCCCCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCCC-EEEEEEEECC
T ss_conf 888852368988983164849999999999989999998888877978999999999999867998989-1999997389
Q ss_pred CEEEEECCCCCCCHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCEEECCCCCEEEEECCCCCCCCC-
Q ss_conf 0799872468888788862--8999888999999999999999985938501689918975799299980555544689-
Q 001784 844 HAGLLLNTYLACPLASILH--TPLDEQSARFCAASVVAALEDLHKRGVLYRGVSPDVLMLDKSGHLQLVDFRFGKGLSG- 920 (1013)
Q Consensus 844 ~~~iv~e~~~~g~L~~~l~--~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrdLkp~NIlid~~g~ikL~Dfg~a~~~~~- 920 (1013)
++|++||||.||+|.+++. +.+++..++.++.||+.||+|||+++|+||||||+|||++.++.+||+|||+|+.+..
T Consensus 106 ~~yivmEy~~gG~L~~~i~~~~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~ 185 (311)
T 4aw0_A 106 KLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE 185 (311)
T ss_dssp EEEEEECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred EEEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCCEEEEECCCCEECCCC
T ss_conf 89999964899899999987499999999999999999999999887826878789969858988899876875025778
Q ss_pred ---CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf ---97322268886326244437999980449999999999971999999999998999999981899999999988999
Q 001784 921 ---NRTFTICGMADYLAPEIVQGKGHGLAADWWALGVLIYFMLQGEMPFGSWRESEIDIVAKIAKGQLSLPQNLSPEAVD 997 (1013)
Q Consensus 921 ---~~~~~~~gt~~y~APE~~~~~~~~~~~DvwsLGvll~elltg~~Pf~~~~~~~~~~~~~i~~~~~~~p~~~~~~~~d 997 (1013)
....+.|||+.|||||++.+.+|+.++|+|||||++|+|++|++||.+ .+..+++++|..+.+.+|..+++++++
T Consensus 186 ~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~--~~~~~~~~~i~~~~~~~p~~~s~~~~d 263 (311)
T 4aw0_A 186 SKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRA--GNEGLIFAKIIKLEYDFPEKFFPKARD 263 (311)
T ss_dssp TTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHTCCCCCTTCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf 776543675568030799897689999689899899999999749899899--799999999971999999656999999
Q ss_pred HHHHHHHCCCCCCCC
Q ss_conf 999840207368689
Q 001784 998 LLTKVVYYNYLVLFY 1012 (1013)
Q Consensus 998 li~~lL~~dP~~R~t 1012 (1013)
||.+||.+||.+|+|
T Consensus 264 li~~lL~~dp~~R~t 278 (311)
T 4aw0_A 264 LVEKLLVLDATKRLG 278 (311)
T ss_dssp HHHHHSCSSGGGSTT
T ss_pred HHHHHCCCCHHHCCC
T ss_conf 999976289757809
No 2
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=1.00 E-value=1 Score=401.06 Aligned_cols=247 Identities=22% Similarity=0.381 Sum_probs=222.6
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEEEEECCHHCCCCHHHHHHHHHHH---CCCCCCCCCCCEEEEEECC
Q ss_conf 3574573799974257965999999968982999999413011023227799998710---0103887611158787325
Q 001784 765 KVSLTDMEWRKCLYSTDCSEIGLVLLRDSENFLSLKRFSKQKVKCLGKEVQVLKEKNL---MKSVSPSACVPQILCTCAD 841 (1013)
Q Consensus 765 ~~~~~~~~i~~~Lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~---l~~l~~~~~i~~~~~~~~~ 841 (1013)
.+++++|++++.||.|+||.||+|+++.+++.||+|++.+..+........+..|..+ +..+.|+++ ++++.+|++
T Consensus 185 ~~slddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~I-V~l~~~f~~ 263 (689)
T 3v5w_A 185 HLTMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFI-VCMSYAFHT 263 (689)
T ss_dssp CCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTB-CCEEEEEEC
T ss_pred CCCHHHEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCE-EEEEEEEEE
T ss_conf 9956892888898316483999999999998999999757882525568999999999999964899987-179999998
Q ss_pred CCCEEEEECCCCCCCHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCEEECCCCCEEEEECCCCCCCC
Q ss_conf 780799872468888788862--899988899999999999999998593850168991897579929998055554468
Q 001784 842 SMHAGLLLNTYLACPLASILH--TPLDEQSARFCAASVVAALEDLHKRGVLYRGVSPDVLMLDKSGHLQLVDFRFGKGLS 919 (1013)
Q Consensus 842 ~~~~~iv~e~~~~g~L~~~l~--~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrdLkp~NIlid~~g~ikL~Dfg~a~~~~ 919 (1013)
..++|+||||+.||+|.+++. +.+++..+++|++||+.||+|||+++|+||||||+|||++.+|++||+|||+|+.+.
T Consensus 264 ~~~lylVmEy~~GGdL~~~l~~~~~l~E~~a~~y~~qIl~aL~yLH~~gIiHRDLKPeNILld~~G~vKL~DFGlA~~~~ 343 (689)
T 3v5w_A 264 PDKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFS 343 (689)
T ss_dssp SSEEEEEECCCCSCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTSCEEECCCTTCEECS
T ss_pred CCEEEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEECCCCEEECCCCEEEECC
T ss_conf 99889999468998299999866999999999999999999999997885416886687598089988964565566637
Q ss_pred CCCCCCCCCCCCCCCHHHHC-CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC-CCHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 99732226888632624443-7999980449999999999971999999999-998999999981899999999988999
Q 001784 920 GNRTFTICGMADYLAPEIVQ-GKGHGLAADWWALGVLIYFMLQGEMPFGSWR-ESEIDIVAKIAKGQLSLPQNLSPEAVD 997 (1013)
Q Consensus 920 ~~~~~~~~gt~~y~APE~~~-~~~~~~~~DvwsLGvll~elltg~~Pf~~~~-~~~~~~~~~i~~~~~~~p~~~~~~~~d 997 (1013)
.....+.|||+.|||||++. +.+|+.++|||||||++|||++|.+||.+.. .+..+++..+....+.+|..+++++++
T Consensus 344 ~~~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~~~i~~~~~~~p~~~S~~a~d 423 (689)
T 3v5w_A 344 KKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRS 423 (689)
T ss_dssp SCCCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHHHHHHHCCCCCCTTSCHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHH
T ss_conf 89877765786731889984799999599999999999999868799999986779999985057988887669999999
Q ss_pred HHHHHHHCCCCCCCC
Q ss_conf 999840207368689
Q 001784 998 LLTKVVYYNYLVLFY 1012 (1013)
Q Consensus 998 li~~lL~~dP~~R~t 1012 (1013)
||.+||.+||.+|++
T Consensus 424 LI~~lL~~dP~~Rl~ 438 (689)
T 3v5w_A 424 LLEGLLQRDVNRRLG 438 (689)
T ss_dssp HHHHHTCSCGGGCTT
T ss_pred HHHHHCCCCHHHCCC
T ss_conf 999976089868799
No 3
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=393.59 Aligned_cols=242 Identities=19% Similarity=0.227 Sum_probs=220.1
Q ss_pred CCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEEEEECCHHCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCEE
Q ss_conf 74573799974257965999999968982999999413011023227799998710010388761115878732578079
Q 001784 767 SLTDMEWRKCLYSTDCSEIGLVLLRDSENFLSLKRFSKQKVKCLGKEVQVLKEKNLMKSVSPSACVPQILCTCADSMHAG 846 (1013)
Q Consensus 767 ~~~~~~i~~~Lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~ 846 (1013)
.+++|++++.||.|+||.||++.++.+++.||+|++.+.... ....+.+.+|+.+|+.|+|+|+| ++++++.++..+|
T Consensus 22 sme~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~-~~~~~~~~~E~~il~~l~HpnIV-~~~~~~~~~~~~y 99 (350)
T 4b9d_A 22 SMEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMS-SKEREESRREVAVLANMKHPNIV-QYRESFEENGSLY 99 (350)
T ss_dssp CCCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSC-HHHHHHHHHHHHHHHHCCCTTBC-CEEEEEEETTEEE
T ss_pred CCCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCC-HHHHHHHHHHHHHHHHCCCCCCC-CEEEEEEECCEEE
T ss_conf 512558847970277939999998899989999998658789-79999999999999877998989-1999999899999
Q ss_pred EEECCCCCCCHHHHHC----CCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCEEECCCCCEEEEECCCCCCCCCC-
Q ss_conf 9872468888788862----89998889999999999999999859385016899189757992999805555446899-
Q 001784 847 LLLNTYLACPLASILH----TPLDEQSARFCAASVVAALEDLHKRGVLYRGVSPDVLMLDKSGHLQLVDFRFGKGLSGN- 921 (1013)
Q Consensus 847 iv~e~~~~g~L~~~l~----~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrdLkp~NIlid~~g~ikL~Dfg~a~~~~~~- 921 (1013)
+|||||+||+|.+++. ..+++..++.|+.||+.||.|||+++|+||||||+|||++.+|.+||+|||+++.+...
T Consensus 100 iVmEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~ 179 (350)
T 4b9d_A 100 IVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTV 179 (350)
T ss_dssp EEEECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEETTCCGGGEEECTTCCEEECSTTEESCCCHHH
T ss_pred EEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHEEECCCCCEEECCCCCCEEECCCC
T ss_conf 99948899839999997389999789999999999999999998991513597899798789998976465214406885
Q ss_pred -CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCC-CCCCCCCHHHHHHH
Q ss_conf -7322268886326244437999980449999999999971999999999998999999981899-99999998899999
Q 001784 922 -RTFTICGMADYLAPEIVQGKGHGLAADWWALGVLIYFMLQGEMPFGSWRESEIDIVAKIAKGQL-SLPQNLSPEAVDLL 999 (1013)
Q Consensus 922 -~~~~~~gt~~y~APE~~~~~~~~~~~DvwsLGvll~elltg~~Pf~~~~~~~~~~~~~i~~~~~-~~p~~~~~~~~dli 999 (1013)
...+.+||+.|||||++.+..|+.++|||||||++|||++|+.||.+ .+..+++.+|..+.. .++..+++++++||
T Consensus 180 ~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~--~~~~~~~~~i~~~~~~~~~~~~s~~~~~li 257 (350)
T 4b9d_A 180 ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEA--GSMKNLVLKIISGSFPPVSLHYSYDLRSLV 257 (350)
T ss_dssp HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCC--SSHHHHHHHHHHTCCCCCCTTSCHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHCCCCCCCCCCCCHHHHHHH
T ss_conf 410145788360399998799989599999999999999978799899--699999999980899999755799999999
Q ss_pred HHHHHCCCCCCCC
Q ss_conf 9840207368689
Q 001784 1000 TKVVYYNYLVLFY 1012 (1013)
Q Consensus 1000 ~~lL~~dP~~R~t 1012 (1013)
.+||.+||.+|+|
T Consensus 258 ~~~L~~dP~~R~s 270 (350)
T 4b9d_A 258 SQLFKRNPRDRPS 270 (350)
T ss_dssp HHHTCSSGGGSCC
T ss_pred HHHCCCCHHHCCC
T ss_conf 9985589667908
No 4
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=1.00 E-value=1 Score=392.02 Aligned_cols=244 Identities=29% Similarity=0.517 Sum_probs=222.4
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEEEEC---CCCCEEEEEEEECCHHCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECC
Q ss_conf 357457379997425796599999996---89829999994130110232277999987100103887611158787325
Q 001784 765 KVSLTDMEWRKCLYSTDCSEIGLVLLR---DSENFLSLKRFSKQKVKCLGKEVQVLKEKNLMKSVSPSACVPQILCTCAD 841 (1013)
Q Consensus 765 ~~~~~~~~i~~~Lg~G~~g~V~~~~~~---~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~ 841 (1013)
....++|++++.||+|+||.||+|++. .+++.||+|++.+..... .....+.+|+.+|+.++|+|+| +++.++.+
T Consensus 20 ~~~p~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~-~~~~~~~~E~~il~~l~HpnIv-~l~~~~~~ 97 (304)
T 3ubd_A 20 KADPSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKV-RDRVRTKMERDILVEVNHPFIV-KLHYAFQT 97 (304)
T ss_dssp CCCGGGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEE-EECC------CCCCCCCCTTEE-CEEEEEEE
T ss_pred CCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCEEEEEEEEEHHHCCH-HHHHHHHHHHHHHHHCCCCCCC-EEEEEEEE
T ss_conf 389556589889721888399999985588789799999981577684-7899999999999877997999-09999998
Q ss_pred CCCEEEEECCCCCCCHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCEEECCCCCEEEEECCCCCCCC
Q ss_conf 780799872468888788862--899988899999999999999998593850168991897579929998055554468
Q 001784 842 SMHAGLLLNTYLACPLASILH--TPLDEQSARFCAASVVAALEDLHKRGVLYRGVSPDVLMLDKSGHLQLVDFRFGKGLS 919 (1013)
Q Consensus 842 ~~~~~iv~e~~~~g~L~~~l~--~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrdLkp~NIlid~~g~ikL~Dfg~a~~~~ 919 (1013)
++.+|++||||+||+|.+++. +.+++..++.++.|++.||.|||+++|+||||||+|||++.+|.+||+|||+|+...
T Consensus 98 ~~~~~ivmEy~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~ 177 (304)
T 3ubd_A 98 EGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESI 177 (304)
T ss_dssp TTEEEEEECCCTTCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTSCEEEESSEEEEC--
T ss_pred CCEEEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCCEEECCCCCCEECC
T ss_conf 99999999757998889999755999999999999999999999997799588887899578689988762366343326
Q ss_pred C--CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 9--97322268886326244437999980449999999999971999999999998999999981899999999988999
Q 001784 920 G--NRTFTICGMADYLAPEIVQGKGHGLAADWWALGVLIYFMLQGEMPFGSWRESEIDIVAKIAKGQLSLPQNLSPEAVD 997 (1013)
Q Consensus 920 ~--~~~~~~~gt~~y~APE~~~~~~~~~~~DvwsLGvll~elltg~~Pf~~~~~~~~~~~~~i~~~~~~~p~~~~~~~~d 997 (1013)
. ....+.+||+.|||||++.+.+|+.++|+|||||++|||++|+.||.+ .+..+++.+|.++.+.+|..+|+++++
T Consensus 178 ~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~--~~~~~~~~~i~~~~~~~p~~~s~~~~~ 255 (304)
T 3ubd_A 178 DHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQG--KDRKETMTMILKAKLGMPQFLSPEAQS 255 (304)
T ss_dssp ---CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHCCCCCCTTSCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC--CCHHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf 887630454418150799996568878777636119999999859899898--499999999971899998768999999
Q ss_pred HHHHHHHCCCCCCCC
Q ss_conf 999840207368689
Q 001784 998 LLTKVVYYNYLVLFY 1012 (1013)
Q Consensus 998 li~~lL~~dP~~R~t 1012 (1013)
||.+||.+||.+|+|
T Consensus 256 li~~~L~~dP~~R~t 270 (304)
T 3ubd_A 256 LLRMLFKRNPANRLG 270 (304)
T ss_dssp HHHHHTCSSGGGSTT
T ss_pred HHHHHCCCCHHHCCC
T ss_conf 999986469878799
No 5
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=391.71 Aligned_cols=239 Identities=20% Similarity=0.323 Sum_probs=218.0
Q ss_pred CCCCEEEEEECCCCCEEEEEEEECCCCCEEEEEEEECCHHCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCEEE
Q ss_conf 45737999742579659999999689829999994130110232277999987100103887611158787325780799
Q 001784 768 LTDMEWRKCLYSTDCSEIGLVLLRDSENFLSLKRFSKQKVKCLGKEVQVLKEKNLMKSVSPSACVPQILCTCADSMHAGL 847 (1013)
Q Consensus 768 ~~~~~i~~~Lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~i 847 (1013)
.+.|++.+.||.|+||.||+|.++.+++.||+|++.+.. ....+.+.+|+.+|+.++|+|+| +++++|.+++.+|+
T Consensus 150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~---~~~~~~~~~Ei~il~~l~HpnIV-~l~~~~~~~~~~~i 225 (423)
T 4fie_A 150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRK---QQRRELLFNEVVIMRDYQHENVV-EMYNSYLVGDELWV 225 (423)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTT---CSSGGGHHHHHHHHHHCCCTTBC-CEEEEEEETTEEEE
T ss_pred HHHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCC---HHHHHHHHHHHHHHHHCCCCCCC-CEEEEEEECCEEEE
T ss_conf 684386169624818489999999999899999986255---46899999999999857998987-16899998999999
Q ss_pred EECCCCCCCHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCEEECCCCCEEEEECCCCCCCCC--CCCC
Q ss_conf 872468888788862-8999888999999999999999985938501689918975799299980555544689--9732
Q 001784 848 LLNTYLACPLASILH-TPLDEQSARFCAASVVAALEDLHKRGVLYRGVSPDVLMLDKSGHLQLVDFRFGKGLSG--NRTF 924 (1013)
Q Consensus 848 v~e~~~~g~L~~~l~-~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrdLkp~NIlid~~g~ikL~Dfg~a~~~~~--~~~~ 924 (1013)
|||||.||+|.++++ +.+++..++.++.||+.||.|||+++|+||||||+|||++.+|.+||+|||+|+.+.. ....
T Consensus 226 VmEy~~gG~L~~~i~~~~l~e~~~~~~~~qil~aL~ylH~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~ 305 (423)
T 4fie_A 226 VMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRK 305 (423)
T ss_dssp EEECCTTEEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCCCBC
T ss_pred EEECCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHEEECCCCCEEEECCCCCEECCCCCCCCC
T ss_conf 99698998289887616989999999999999999999988904465787778985899989803726547778876434
Q ss_pred CCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCC---CCCCCCCCHHHHHHHHH
Q ss_conf 226888632624443799998044999999999997199999999999899999998189---99999999889999998
Q 001784 925 TICGMADYLAPEIVQGKGHGLAADWWALGVLIYFMLQGEMPFGSWRESEIDIVAKIAKGQ---LSLPQNLSPEAVDLLTK 1001 (1013)
Q Consensus 925 ~~~gt~~y~APE~~~~~~~~~~~DvwsLGvll~elltg~~Pf~~~~~~~~~~~~~i~~~~---~~~p~~~~~~~~dli~~ 1001 (1013)
+.+||+.|||||++.+..|+.++|||||||++|||++|++||.+ .+..+.+..|.... +..+..+++++++||.+
T Consensus 306 ~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~--~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~ 383 (423)
T 4fie_A 306 SLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFN--EPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDR 383 (423)
T ss_dssp CCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTT--SCHHHHHHHHHHSCCCCCSCTTSSCHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 66647472799997799999689999999999999978799898--6999999999727998876501299999999999
Q ss_pred HHHCCCCCCCC
Q ss_conf 40207368689
Q 001784 1002 VVYYNYLVLFY 1012 (1013)
Q Consensus 1002 lL~~dP~~R~t 1012 (1013)
||.+||.+|+|
T Consensus 384 ~L~~dP~~R~t 394 (423)
T 4fie_A 384 LLVRDPAQRAT 394 (423)
T ss_dssp HSCSSTTTSCC
T ss_pred HCCCCHHHCCC
T ss_conf 86789568909
No 6
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=390.79 Aligned_cols=239 Identities=19% Similarity=0.314 Sum_probs=217.3
Q ss_pred CCCCEEEEEECCCCCEEEEEEEECCCCCEEEEEEEECCHHCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCEEE
Q ss_conf 45737999742579659999999689829999994130110232277999987100103887611158787325780799
Q 001784 768 LTDMEWRKCLYSTDCSEIGLVLLRDSENFLSLKRFSKQKVKCLGKEVQVLKEKNLMKSVSPSACVPQILCTCADSMHAGL 847 (1013)
Q Consensus 768 ~~~~~i~~~Lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~i 847 (1013)
.+.|++.+.||.|+||.||+|.++.+++.||+|++.+.. ....+.+.+|+.+|+.++|+|+| +++++|.+++.+|+
T Consensus 73 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~---~~~~~~~~~Ei~il~~l~HpnIV-~l~~~~~~~~~~~i 148 (346)
T 4fih_A 73 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRK---QQRRELLFNEVVIMRDYQHENVV-EMYNSYLVGDELWV 148 (346)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGG---CSSGGGGHHHHHHHHHCCCTTBC-CEEEEEEETTEEEE
T ss_pred HHHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCC---HHHHHHHHHHHHHHHHCCCCCCC-CEEEEEEECCEEEE
T ss_conf 575387079602728299999998999899999985276---56899999999999867998999-19999998999999
Q ss_pred EECCCCCCCHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCEEECCCCCEEEEECCCCCCCCC--CCCC
Q ss_conf 872468888788862-8999888999999999999999985938501689918975799299980555544689--9732
Q 001784 848 LLNTYLACPLASILH-TPLDEQSARFCAASVVAALEDLHKRGVLYRGVSPDVLMLDKSGHLQLVDFRFGKGLSG--NRTF 924 (1013)
Q Consensus 848 v~e~~~~g~L~~~l~-~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrdLkp~NIlid~~g~ikL~Dfg~a~~~~~--~~~~ 924 (1013)
|||||+||+|.+++. +.+++..++.++.||+.||.|||+++|+||||||+|||++.+|.+||+|||+++.+.. ....
T Consensus 149 vmEy~~gg~L~~~l~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~ 228 (346)
T 4fih_A 149 VMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRK 228 (346)
T ss_dssp EECCCTTEEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCCBC
T ss_pred EEECCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCCEEEECCCCCEECCCCCCCCC
T ss_conf 99698998089998718989999999999999999999988835562788997887999889902757536678877534
Q ss_pred CCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCC---CCCCCCCHHHHHHHHH
Q ss_conf 2268886326244437999980449999999999971999999999998999999981899---9999999889999998
Q 001784 925 TICGMADYLAPEIVQGKGHGLAADWWALGVLIYFMLQGEMPFGSWRESEIDIVAKIAKGQL---SLPQNLSPEAVDLLTK 1001 (1013)
Q Consensus 925 ~~~gt~~y~APE~~~~~~~~~~~DvwsLGvll~elltg~~Pf~~~~~~~~~~~~~i~~~~~---~~p~~~~~~~~dli~~ 1001 (1013)
+.+||+.|||||++.+.+|+.++|||||||++|||++|++||.+ .+..+.++.|..... ..+..+++++++||.+
T Consensus 229 ~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~--~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~ 306 (346)
T 4fih_A 229 SLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFN--EPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDR 306 (346)
T ss_dssp CCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTT--SCHHHHHHHHHHSSCCCCSCGGGSCHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 65627582799997799999689999999999999978799898--5999999999717999887502299999999999
Q ss_pred HHHCCCCCCCC
Q ss_conf 40207368689
Q 001784 1002 VVYYNYLVLFY 1012 (1013)
Q Consensus 1002 lL~~dP~~R~t 1012 (1013)
||.+||.+|+|
T Consensus 307 ~L~~dP~~R~t 317 (346)
T 4fih_A 307 LLVRDPAQRAT 317 (346)
T ss_dssp HSCSSTTTSCC
T ss_pred HCCCCHHHCCC
T ss_conf 86799568909
No 7
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=1.00 E-value=1 Score=385.64 Aligned_cols=243 Identities=23% Similarity=0.364 Sum_probs=224.3
Q ss_pred CCCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEEEEECCHHCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCE
Q ss_conf 57457379997425796599999996898299999941301102322779999871001038876111587873257807
Q 001784 766 VSLTDMEWRKCLYSTDCSEIGLVLLRDSENFLSLKRFSKQKVKCLGKEVQVLKEKNLMKSVSPSACVPQILCTCADSMHA 845 (1013)
Q Consensus 766 ~~~~~~~i~~~Lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~ 845 (1013)
..+++|++.+.||+|+||.||++.++.+++.||+|++.+...........+.+|+.+|+.++|+|++ +++.++.+++.+
T Consensus 10 ~~ig~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv-~~~~~~~~~~~~ 88 (275)
T 3hyh_A 10 AHIGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHII-KLYDVIKSKDEI 88 (275)
T ss_dssp ----CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBC-CEEEEEECSSEE
T ss_pred CEEECEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCCC-EEEEEEEECCEE
T ss_conf 8933868999982176819999999999989999998378867878999999999999877998999-299999989989
Q ss_pred EEEECCCCCCCHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCEEECCCCCEEEEECCCCCCCCC-CC
Q ss_conf 99872468888788862--8999888999999999999999985938501689918975799299980555544689-97
Q 001784 846 GLLLNTYLACPLASILH--TPLDEQSARFCAASVVAALEDLHKRGVLYRGVSPDVLMLDKSGHLQLVDFRFGKGLSG-NR 922 (1013)
Q Consensus 846 ~iv~e~~~~g~L~~~l~--~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrdLkp~NIlid~~g~ikL~Dfg~a~~~~~-~~ 922 (1013)
|++|||+ +|+|.+++. +.+++..++.++.||+.||+|||+++|+||||||+||+++.++.+||+|||+|+.... ..
T Consensus 89 ~ivmEy~-~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~~ 167 (275)
T 3hyh_A 89 IMVIEYA-GNELFDYIVQRDKMSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNF 167 (275)
T ss_dssp EEEEECC-CEEHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTCCEEECCSSCC--------
T ss_pred EEEEECC-CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCCEEEEECCCCEECCCCCC
T ss_conf 9999278-997899998749999999999999999999999988930666875876887999899945477726678874
Q ss_pred CCCCCCCCCCCCHHHHCCCCC-CCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 322268886326244437999-9804499999999999719999999999989999999818999999999889999998
Q 001784 923 TFTICGMADYLAPEIVQGKGH-GLAADWWALGVLIYFMLQGEMPFGSWRESEIDIVAKIAKGQLSLPQNLSPEAVDLLTK 1001 (1013)
Q Consensus 923 ~~~~~gt~~y~APE~~~~~~~-~~~~DvwsLGvll~elltg~~Pf~~~~~~~~~~~~~i~~~~~~~p~~~~~~~~dli~~ 1001 (1013)
..+.+||+.|||||++.+..+ +.++|+||||+++|+|++|+.||.+ .+..++++.|..+.+.+|..+++++++||.+
T Consensus 168 ~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~--~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~ 245 (275)
T 3hyh_A 168 LKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDD--ESIPVLFKNISNGVYTLPKFLSPGAAGLIKR 245 (275)
T ss_dssp -------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHTCCCCCTTSCHHHHHHHHH
T ss_pred CCCEEECCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf 67702893527745506898889836568789999999988799899--8999999999749999987799999999999
Q ss_pred HHHCCCCCCCC
Q ss_conf 40207368689
Q 001784 1002 VVYYNYLVLFY 1012 (1013)
Q Consensus 1002 lL~~dP~~R~t 1012 (1013)
||.+||.+|+|
T Consensus 246 ~L~~dP~~R~s 256 (275)
T 3hyh_A 246 MLIVNPLNRIS 256 (275)
T ss_dssp HSCSSGGGSCC
T ss_pred HCCCCHHHCCC
T ss_conf 86589668919
No 8
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A
Probab=1.00 E-value=1 Score=384.39 Aligned_cols=270 Identities=24% Similarity=0.407 Sum_probs=227.3
Q ss_pred CCCCCCCCCCEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEECCCCC-CCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 7644899982257429972499999713634799999987553886358889-898469999628990229999999999
Q 001784 75 SQFLPPEGSRTVKVPSAKYELRYSFLSQRGYYPDALDKANQDSFCIHTPFGT-SQDDHFFGVFDGHGEFGAQCSQFVKRK 153 (1013)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~G~~~~~~r~~neD~~~~~~~~~~-~~~~~~f~V~DGhG~~G~~~s~~~~~~ 153 (1013)
+.+|++|.+.+.........++|+..|++|+ |..|||++++...+.. ..++.+|+|||||| |+.+|++|+++
T Consensus 2 g~~l~~p~~~k~~~~~~~~~l~~g~~s~~G~-----R~~nEDa~~~~~~~~~~~~~~~lf~V~DGhG--G~~aa~~as~~ 74 (382)
T 1a6q_A 2 GAFLDKPKMEKHNAQGQGNGLRYGLSSMQGW-----RVEMEDAHTAVIGLPSGLESWSFFAVYDGHA--GSQVAKYCCEH 74 (382)
T ss_dssp CCCCSSCEEEEEEEEEEETTEEEEEEEEEET-----SSSCCEEEEEEEEETTTEEEEEEEEEEEEES--CSHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEECCCC-----CCCCCCEEEEECCCCCCCCCEEEEEEECCCC--CHHHHHHHHHH
T ss_conf 7566677525545668888538999944789-----8777861699547888888769999985888--68999999999
Q ss_pred HHHHHHHCCC--------CCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCEEEEEEEECCEEEEEECCCCEEEEEEE
Q ss_conf 8999981279--------50359999999999984998741---179888874199999969979999825564899953
Q 001784 154 LCENLLRNNK--------FHEDAVDACHSSYLTTNSQLHAD---VLDDSMSGTTAVTVLVRGRTIYVANSGDSRAVLAER 222 (1013)
Q Consensus 154 l~~~l~~~~~--------~~~~~~~~l~~a~~~~~~~~~~~---~~~~~~~GtTa~~~~i~~~~l~vanvGDSRa~l~~~ 222 (1013)
+.+.|..... ....+..+|..+|..+|+.+.+. ......+|||++++++.++++|+|||||||||++|.
T Consensus 75 l~~~l~~~~~~~~~~~~~~~~~~~~~l~~af~~~n~~i~~~~~~~~~~~~~GtT~~~~li~~~~l~vanvGDSRayl~r~ 154 (382)
T 1a6q_A 75 LLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRN 154 (382)
T ss_dssp HHHHHHTSHHHHCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCEECEEEEEECSSEEEEEEESSCEEEEEET
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCEEEEEECCCCEEEEEEC
T ss_conf 99999850665405777777899999999999999999864540357788864299999989948999847875999979
Q ss_pred CCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 29827888099988999952899999819951002223477788865689888899999942334887576422334585
Q 001784 223 RGKEIVAVDLSIDQTPFREDELERVKLSGARVLTLDQIEGLKNPDVQCWGTEEGDDGDPPRLWVPNGMYPGTAFTRSIGD 302 (1013)
Q Consensus 223 ~~~~~~~~~lt~dH~~~~~~E~~ri~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~gl~~tRalGd 302 (1013)
+. +.+||.||+|.++.|++||..+||.+.. .+..+.|++||||||
T Consensus 155 g~----~~~LT~DHs~~~~~E~~RI~~~gg~v~~-------------------------------~Rv~g~l~ltRalGd 199 (382)
T 1a6q_A 155 RK----VHFFTQDHKPSNPLEKERIQNAGGSVMI-------------------------------QRVNGSLAVSRALGD 199 (382)
T ss_dssp TE----EEEECCCCCTTSHHHHHHHHHTTCCEET-------------------------------TEETTTBSCSBCEEC
T ss_pred CC----EEEECCCCCCCCHHHHHHHHHCCCEEEC-------------------------------CCCCCCEEEEEECCC
T ss_conf 91----5781789989998899999866967751-------------------------------331584101011376
Q ss_pred CCCCCC--------CEEECCCEEEEEEC-CCCCEEEEECCCCCCCCCHHHHHHHHHC----CCCHHHHHHHHHHHHHHHH
Q ss_conf 655202--------83516714999918-9998899982762112475889999860----5996899999999999999
Q 001784 303 SIAETI--------GVVANPEIVVWELT-NDHPFFVLASDGVFEFLSSQAVVDMVAK----YKDPRDACAAIVAESYRLW 369 (1013)
Q Consensus 303 ~~~k~~--------gv~~~P~v~~~~l~-~~d~~lil~SDGl~d~ls~~ei~~~v~~----~~~~~~~a~~l~~~a~~~~ 369 (1013)
..+|.. .|+++|++..+++. ++|+|||||||||||+++++++++++.. ..+++.+|+.|++.|+.
T Consensus 200 ~~~K~~~~~~~~~~~v~~~Pdv~~~~l~~~~dd~llLaSDGlwd~ls~~ei~~~v~~~~~~~~~~~~~a~~Lv~~A~~-- 277 (382)
T 1a6q_A 200 FDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLY-- 277 (382)
T ss_dssp GGGSCCTTCCGGGSSSBCCCEEEEEECCTTTEEEEEEECHHHHTTSCHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH--
T ss_pred HHHCCCCCCCCCCCEEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH--
T ss_conf 754046667876673666436999980378983999966675678875999999999874479899999999999986--
Q ss_pred HHHCCCCCCEEEEEEECCCCCC
Q ss_conf 8208999992899999179766
Q 001784 370 LQYETRTDDITVIVVHINGLKN 391 (1013)
Q Consensus 370 ~~~~~~~DniT~ivv~~~~~~~ 391 (1013)
+|+.||||||||++.+.+.
T Consensus 278 ---~g~~DNiTvivv~~~~~~~ 296 (382)
T 1a6q_A 278 ---KGSRDNMSVILICFPNAPK 296 (382)
T ss_dssp ---TTCCSCEEEEEEECTTSCC
T ss_pred ---CCCCCCEEEEEEEECCCCC
T ss_conf ---2996887999999158888
No 9
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A
Probab=1.00 E-value=1 Score=383.28 Aligned_cols=262 Identities=24% Similarity=0.357 Sum_probs=217.2
Q ss_pred EEEEEEECCCCCCCCCC---CCCCCCEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC----CCCHH
Q ss_conf 99999713634799999---987553886358889898469999628990229999999999899998127----95035
Q 001784 95 LRYSFLSQRGYYPDALD---KANQDSFCIHTPFGTSQDDHFFGVFDGHGEFGAQCSQFVKRKLCENLLRNN----KFHED 167 (1013)
Q Consensus 95 ~~~~~~s~~G~~~~~~r---~~neD~~~~~~~~~~~~~~~~f~V~DGhG~~G~~~s~~~~~~l~~~l~~~~----~~~~~ 167 (1013)
+.+|.++++|||+...+ ..|||++++... ..+..||||||||| |+.+|+||+++++..|.... ....+
T Consensus 27 ~~~G~~~~~G~r~~g~~~~r~~nED~~~~~~~---~~~~~lf~V~DGhG--G~~aa~~as~~l~~~l~~~~~~~~~~~~~ 101 (401)
T 2j4o_A 27 SGVGSASNRSYSADGKGTESHPPEDSWLKFRS---ENNCFLYGVFNGYD--GNRVTNFVAQRLSAELLLGQLNAEHAEAD 101 (401)
T ss_dssp EEEEEECCEEECSSSSCEECCCCCEEEEEEEE---TTTEEEEEEEEEES--SSHHHHHHHHHHHHTTSSSSCCTTSCHHH
T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCEEEEECC---CCCEEEEEEECCCC--CHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 75457843532545666677888865799608---99849999974999--77999999999999999856410344164
Q ss_pred HHHHHHHHHHHHHHHHHHCC-------------------------------------CCCCCCCCEEEEEEEECCEEEEE
Q ss_conf 99999999999849987411-------------------------------------79888874199999969979999
Q 001784 168 AVDACHSSYLTTNSQLHADV-------------------------------------LDDSMSGTTAVTVLVRGRTIYVA 210 (1013)
Q Consensus 168 ~~~~l~~a~~~~~~~~~~~~-------------------------------------~~~~~~GtTa~~~~i~~~~l~va 210 (1013)
+.++|..+|..+|+.+.+.. .....+||||++++|.++++|||
T Consensus 102 ~~~~l~~af~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~GtTa~~~li~~~~l~va 181 (401)
T 2j4o_A 102 VRRVLLQAFDVVERSFLESIDDALAEKASLQSQLPEGVPQHQLPPQYQKILERLKTLEREISGGAMAVVAVLLNNKLYVA 181 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCSSCSCGGGHHHHHHHHHHHHHHCCEEEEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEEEECCEEEEE
T ss_conf 99999999999999999988898753200012355554221011111002222201346678865779999989988999
Q ss_pred ECCCCEEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 82556489995329827888099988999952899999819951002223477788865689888899999942334887
Q 001784 211 NSGDSRAVLAERRGKEIVAVDLSIDQTPFREDELERVKLSGARVLTLDQIEGLKNPDVQCWGTEEGDDGDPPRLWVPNGM 290 (1013)
Q Consensus 211 nvGDSRa~l~~~~~~~~~~~~lt~dH~~~~~~E~~ri~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 290 (1013)
||||||||+++.+.+++.+.+||.||+|.++.|+.||.++||.+.... ..++
T Consensus 182 nvGDSRa~l~r~~~~g~~~~~LT~DH~~~~~~E~~Ri~~~Gg~v~~~~----------------------------~~r~ 233 (401)
T 2j4o_A 182 NVGTNRALLCKSTVDGLQVTQLNVDHTTENEDELFRLSQLGLDAGKIK----------------------------QVGI 233 (401)
T ss_dssp EESSCEEEEEEECSSSEEEEECSCCCSTTSHHHHHHHHTTTCCHHHHH----------------------------HHCC
T ss_pred ECCCCEEEEEECCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCEEECC----------------------------CCCC
T ss_conf 726846999981799866887999999998789999997099755334----------------------------7501
Q ss_pred CCCCCCCCCCCCCCCCC-------------CCEEECCCEEE-EEECCCCCEEEEECCCCCCCC--------CHHHHHHHH
Q ss_conf 57642233458565520-------------28351671499-991899988999827621124--------758899998
Q 001784 291 YPGTAFTRSIGDSIAET-------------IGVVANPEIVV-WELTNDHPFFVLASDGVFEFL--------SSQAVVDMV 348 (1013)
Q Consensus 291 ~~gl~~tRalGd~~~k~-------------~gv~~~P~v~~-~~l~~~d~~lil~SDGl~d~l--------s~~ei~~~v 348 (1013)
.++|++||||||..+|. .+++++|+|.. +++.++|+|||||||||||++ +++++++++
T Consensus 234 ~g~l~vtRalGd~~~k~~~~~~~~~~~~~~~~v~~~Pdv~~~~~l~~~d~flvLaSDGlwd~l~~~~~~~~s~~ei~~~v 313 (401)
T 2j4o_A 234 ICGQESTRRIGDYKVKYGYTDIDLLSAAKSKPIIAEPEIHGAQPLDGVTGFLVLMSEGLYKALEAAHGPGQANQEIAAMI 313 (401)
T ss_dssp BTTBCCSBCEECHHHHHSGGGSTTTTTCSSCSSBCCCEEEEEEECTTCCEEEEEECHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCEECCCEEEEEEEECCCCCEEEEECCCHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 48734651108886624654332334567897654665877488479996999975414334013245788999999999
Q ss_pred HC----CCCHHHHHHHHHHHHHHHHHH--HCCC--------CCCEEEEEEECCCC
Q ss_conf 60----599689999999999999982--0899--------99928999991797
Q 001784 349 AK----YKDPRDACAAIVAESYRLWLQ--YETR--------TDDITVIVVHINGL 389 (1013)
Q Consensus 349 ~~----~~~~~~~a~~l~~~a~~~~~~--~~~~--------~DniT~ivv~~~~~ 389 (1013)
.. ..+++.+|+.|++.|+..|.. .+|+ .||||||||+|...
T Consensus 314 ~~~l~~~~~~~~~a~~Lv~~A~~~~~~a~~~G~~~~~~~~~~DNiTvivv~~~~~ 368 (401)
T 2j4o_A 314 DTEFAKQTSLDAVAQAVVDRVKRIHSDTFASGGERARFCPRHEDMTLLVRNFGYP 368 (401)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHHHHHHHHHSCSSGGGGCSEECCEEEEEEEEBCC
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCC
T ss_conf 9998627999999999999999850233304774335678999859999983798
No 10
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens}
Probab=1.00 E-value=1 Score=382.29 Aligned_cols=270 Identities=24% Similarity=0.412 Sum_probs=227.9
Q ss_pred CCCCCCCCCCEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEECCCCC-CCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 7644899982257429972499999713634799999987553886358889-898469999628990229999999999
Q 001784 75 SQFLPPEGSRTVKVPSAKYELRYSFLSQRGYYPDALDKANQDSFCIHTPFGT-SQDDHFFGVFDGHGEFGAQCSQFVKRK 153 (1013)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~G~~~~~~r~~neD~~~~~~~~~~-~~~~~~f~V~DGhG~~G~~~s~~~~~~ 153 (1013)
+.++++|.+.+......+..++|+..|++|+ |..|||++++...+.. ..+..+|+|||||| |+.+|++++++
T Consensus 4 g~~l~~p~~~~~~~~~~~~~~~~~~~s~~G~-----R~~nED~~~~~~~~~~~~~~~~l~~V~DGhG--G~~~a~~as~~ 76 (307)
T 2p8e_A 4 GAFLDKPKTEKHNAHGAGNGLRYGLSSMQGW-----RVEMEDAHTAVVGIPHGLEDWSFFAVYDGHA--GSRVANYCSTH 76 (307)
T ss_dssp --CCSSCEEEEEEEEEEETTEEEEEEEEEET-----SSSCCEEEEEEEEETTTEEEEEEEEEEEEES--CSHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEECCCC-----CCCCCCEEEEEECCCCCCCCEEEEEEECCCC--CHHHHHHHHHH
T ss_conf 3356778511213567778704999852789-----9765545789724788988769999978989--99999999999
Q ss_pred HHHHHHHCCCC-------------CHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCEEEEEEEECCEEEEEECCCCEE
Q ss_conf 89999812795-------------03599999999999849987411---798888741999999699799998255648
Q 001784 154 LCENLLRNNKF-------------HEDAVDACHSSYLTTNSQLHADV---LDDSMSGTTAVTVLVRGRTIYVANSGDSRA 217 (1013)
Q Consensus 154 l~~~l~~~~~~-------------~~~~~~~l~~a~~~~~~~~~~~~---~~~~~~GtTa~~~~i~~~~l~vanvGDSRa 217 (1013)
+.+.|.+...+ ..++..+|..+|..+|+.+.+.. .....+|||++++++.++++|+||||||||
T Consensus 77 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~i~~~~~~~~~~~~~GtT~~~~~i~~~~l~vanvGDSRa 156 (307)
T 2p8e_A 77 LLEHITTNEDFRAAGKSGSALELSVENVKNGIRTGFLKIDEYMRNFSDLRNGMDRSGSTAVGVMISPKHIYFINCGDSRA 156 (307)
T ss_dssp HHHHHHTSTTTC-----------CHHHHHHHHHHHHHHHHHHHHTSTTTC---CCCEECEEEEEECSSEEEEEEESSCEE
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCEEEEECCCCEE
T ss_conf 99999865766404544444434679999999999999999998515412577898871899999789189997368579
Q ss_pred EEEEECCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99953298278880999889999528999998199510022234777888656898888999999423348875764223
Q 001784 218 VLAERRGKEIVAVDLSIDQTPFREDELERVKLSGARVLTLDQIEGLKNPDVQCWGTEEGDDGDPPRLWVPNGMYPGTAFT 297 (1013)
Q Consensus 218 ~l~~~~~~~~~~~~lt~dH~~~~~~E~~ri~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~gl~~t 297 (1013)
|++|++. +.+||.||+|.++.|+.||..+||.+.. .+..+.|++|
T Consensus 157 ~l~r~g~----~~~lT~DH~~~~~~E~~rI~~~gg~v~~-------------------------------~rv~g~l~lt 201 (307)
T 2p8e_A 157 VLYRNGQ----VCFSTQDHKPCNPREKERIQNAGGSVMI-------------------------------QRVNGSLAVS 201 (307)
T ss_dssp EEEETTE----EEEECCCCCTTSHHHHHHHHHTTCCEET-------------------------------TEETTTBSCS
T ss_pred EEEECCC----CCCCCCCCCCCCHHHHHHHHHCCCEEEE-------------------------------CCCCCEEECC
T ss_conf 9998996----5607888899797899999986998981-------------------------------7536757033
Q ss_pred CCCCCCCCCCC--------CEEECCCEEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHC----CCCHHHHHHHHHHHH
Q ss_conf 34585655202--------835167149999189998899982762112475889999860----599689999999999
Q 001784 298 RSIGDSIAETI--------GVVANPEIVVWELTNDHPFFVLASDGVFEFLSSQAVVDMVAK----YKDPRDACAAIVAES 365 (1013)
Q Consensus 298 RalGd~~~k~~--------gv~~~P~v~~~~l~~~d~~lil~SDGl~d~ls~~ei~~~v~~----~~~~~~~a~~l~~~a 365 (1013)
|||||..+|.. .|+++|++..+++.++|+|||||||||||+++++++++++.. ..+++.+|+.|++.|
T Consensus 202 RalGd~~~k~~~~~~~~~~~v~~~pdv~~~~l~~~d~~llL~SDGl~d~ls~~ei~~~v~~~~~~~~~~~~~a~~Lv~~A 281 (307)
T 2p8e_A 202 RALGDYDYKCVDGKGPTEQLVSPEPEVYEILRAEEDEFIILACDGIWDVMSNEELCEYVKSRLEVSDDLENVCNWVVDTC 281 (307)
T ss_dssp BCEECGGGSCCTTCCGGGSSSBCCCEEEEEECCTTEEEEEEECHHHHTTSCHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHCCCCCCCCCCEEECCCEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 24458877227666777781752476999981799809999788733178879999999998743799999999999999
Q ss_pred HHHHHHHCCCCCCEEEEEEECCCCCC
Q ss_conf 99998208999992899999179766
Q 001784 366 YRLWLQYETRTDDITVIVVHINGLKN 391 (1013)
Q Consensus 366 ~~~~~~~~~~~DniT~ivv~~~~~~~ 391 (1013)
+. +|+.||||||||++...+.
T Consensus 282 ~~-----~g~~DNiTvivv~~~~~~~ 302 (307)
T 2p8e_A 282 LH-----KGSRDNMSIVLVCFSNEGH 302 (307)
T ss_dssp HH-----TTCCSCEEEEEEEC-----
T ss_pred HH-----CCCCCCEEEEEEECCCCCC
T ss_conf 87-----6997880999998788776
Done!