Citrus Sinensis ID: 001786
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1013 | 2.2.26 [Sep-21-2011] | |||||||
| Q6YYA3 | 725 | Chloroplastic group IIA i | no | no | 0.537 | 0.750 | 0.412 | 1e-108 | |
| Q9FYT6 | 715 | Chloroplastic group IIA i | N/A | no | 0.517 | 0.732 | 0.415 | 1e-107 | |
| Q9LF10 | 720 | Chloroplastic group IIA i | no | no | 0.370 | 0.520 | 0.432 | 2e-87 | |
| Q67XL4 | 444 | Uncharacterized CRM domai | no | no | 0.165 | 0.378 | 0.289 | 1e-14 | |
| Q9SL79 | 701 | CRS2-associated factor 1, | no | no | 0.083 | 0.121 | 0.344 | 4e-12 | |
| Q84N49 | 674 | CRS2-associated factor 1, | N/A | no | 0.084 | 0.127 | 0.333 | 2e-10 | |
| Q5VMQ5 | 701 | CRS2-associated factor 1, | no | no | 0.077 | 0.112 | 0.333 | 2e-10 | |
| Q657G7 | 607 | CRS2-associated factor 2, | no | no | 0.116 | 0.194 | 0.346 | 2e-10 | |
| Q84N48 | 611 | CRS2-associated factor 2, | N/A | no | 0.092 | 0.153 | 0.35 | 5e-10 | |
| Q6Z4U2 | 428 | CRS2-associated factor 1, | no | no | 0.067 | 0.158 | 0.375 | 6e-10 |
| >sp|Q6YYA3|CRS1_ORYSJ Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0360100 PE=2 SV=1 | Back alignment and function desciption |
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Score = 392 bits (1007), Expect = e-108, Method: Compositional matrix adjust.
Identities = 242/587 (41%), Positives = 330/587 (56%), Gaps = 43/587 (7%)
Query: 167 EKEKEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERW-RHAEVVK 225
EK+ VPT AE +L EL RLR G + + KAGIT+ +V + +W + E+
Sbjct: 142 EKKTRVPTRAETELEAGELERLRRAARGKERWARAKKAGITDEVVEEVRGQWAKGQELAG 201
Query: 226 IVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSD 285
+ + R M R + LE KTGGLVVW G +YRG+ Y +
Sbjct: 202 VRIVEPLRRCMDRAREILEIKTGGLVVWTRGGIHFVYRGSSY----------LENAKRHR 251
Query: 286 DLPNQLVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAE 345
D N +E L S S P+ Q K +TL + + P +
Sbjct: 252 DFVNY---NEEL-------SPVTSNNPTSQGKYWSK-DETLTNDNDE-ADDKDDKPIKGT 299
Query: 346 LVE-EADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEM 404
L E E +RLLD LGPRF DWW P PVDADLLP VP ++ PFR P GV+P L ++E+
Sbjct: 300 LYEREVNRLLDSLGPRFIDWWWNTPLPVDADLLPEVVPDFKTPFRQCPPGVRPALADEEL 359
Query: 405 TTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELK 464
T LR+ RPLP HF LGRN LQGLAAAI+KLWEK IAK+AVK G QNTN E MA+ LK
Sbjct: 360 TYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEKSLIAKVAVKVGIQNTNHEQMARNLK 419
Query: 465 RLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPEL-------- 516
RLTGGT++ R++++I+ YRGKDFLP + ++ E R+ + +EE L
Sbjct: 420 RLTGGTVILRNKDYIIIYRGKDFLPGGVAESVIE-RESQVHDQQAKEEEARLKMADSLQM 478
Query: 517 --GNRHDNSGDNTQDEFGCTNDQKSTMHSEQKERRSAEVAIRR-------TNIRLSRVLE 567
G + S T E+ +D + +E R E R RLS + +
Sbjct: 479 IVGLSSERSYVGTFREYQDFHDSHARRTTENNFRIQLEAKKHRLEKELKDQEWRLSMLTK 538
Query: 568 KKAEAEKLLAELEEE-RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVE 626
K + ++LA+L P + + D+E +TEEER + RK+GL+M +L+GRRGVF+G +E
Sbjct: 539 KIERSNQVLAKLHSSWSPSKKDGDRELLTEEERRIFRKIGLKMDEHVLLGRRGVFEGVIE 598
Query: 627 NMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYE 686
+H HWKH+E+VK+I+KQ + + LEVE+GG L+A+ER +AIILYRGKNY
Sbjct: 599 EIHQHWKHKEVVKVITKQNQASQITYTSMMLEVETGGTLIAIERFTTSHAIILYRGKNYR 658
Query: 687 RPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQL 733
RP P LLTKREA++RS+E QRR S+K E ++I++LK +L
Sbjct: 659 RPTKSAPSNLLTKREALQRSIEVQRRGSMKYFAQERKKSIDELKREL 705
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Required for the splicing of group IIA introns in chloroplasts, by regulating the intron folding. Forms splicing particles with RNA. Also involved in chloroplast protein translation. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q9FYT6|CRS1_MAIZE Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Zea mays GN=CRS1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9LF10|CRS1_ARATH Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Arabidopsis thaliana GN=At5g16180 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9SL79|CAF1P_ARATH CRS2-associated factor 1, chloroplastic OS=Arabidopsis thaliana GN=At2g20020 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q84N49|CAF1P_MAIZE CRS2-associated factor 1, chloroplastic OS=Zea mays GN=CAF1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q5VMQ5|CAF1P_ORYSJ CRS2-associated factor 1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0495900 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q657G7|CAF2P_ORYSJ CRS2-associated factor 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0323300 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q84N48|CAF2P_MAIZE CRS2-associated factor 2, chloroplastic OS=Zea mays GN=CAF2 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q6Z4U2|CAF1M_ORYSJ CRS2-associated factor 1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os08g0174900 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1013 | ||||||
| 296087726 | 1028 | unnamed protein product [Vitis vinifera] | 0.914 | 0.900 | 0.584 | 0.0 | |
| 225452572 | 1044 | PREDICTED: chloroplastic group IIA intro | 0.914 | 0.886 | 0.583 | 0.0 | |
| 255552728 | 1009 | conserved hypothetical protein [Ricinus | 0.875 | 0.879 | 0.573 | 0.0 | |
| 30678323 | 1011 | CRM family member 2 [Arabidopsis thalian | 0.906 | 0.908 | 0.528 | 0.0 | |
| 6692258 | 1020 | unknown protein [Arabidopsis thaliana] | 0.906 | 0.9 | 0.524 | 0.0 | |
| 449459492 | 1032 | PREDICTED: chloroplastic group IIA intro | 0.924 | 0.907 | 0.535 | 0.0 | |
| 449515235 | 1053 | PREDICTED: LOW QUALITY PROTEIN: chloropl | 0.940 | 0.905 | 0.529 | 0.0 | |
| 224059986 | 1012 | predicted protein [Populus trichocarpa] | 0.690 | 0.690 | 0.648 | 0.0 | |
| 356573408 | 1027 | PREDICTED: chloroplastic group IIA intro | 0.899 | 0.887 | 0.509 | 0.0 | |
| 357496109 | 1096 | Chloroplastic group IIA intron splicing | 0.879 | 0.812 | 0.531 | 0.0 |
| >gi|296087726|emb|CBI34982.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1063 bits (2749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 599/1025 (58%), Positives = 713/1025 (69%), Gaps = 99/1025 (9%)
Query: 2 LLSHYYHNPILLPKTLTNSSSPF------FTFHK------TLSLQNPEKPSIFVISCSKT 49
L+ Y NP+LL TL SPF FT T NP KPS F++ S
Sbjct: 16 LILFYSPNPMLL--TLCRHHSPFPSPTPTFTSSPPSISPSTFKTLNP-KPSKFILRAS-- 70
Query: 50 QNPLTQSETRVQNDTTSAIQRIADKLRSLGIVEQTTSKDDTLNPEPETRATDNAGEIFIP 109
NP Q+ + +AIQRIA+KLRSLG V+ S+ + +P A +AGEIF+P
Sbjct: 71 -NPDAQTLPK------TAIQRIAEKLRSLGYVDGDESRKVLSSDKP---ANGSAGEIFVP 120
Query: 110 LPHRIPKYRVGHTIDDSWSTPENPVPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKE 169
LP+++PK+RVGHTID SWS PENPVP PGTG I R+++L KEV R+K L + +++
Sbjct: 121 LPNQLPKHRVGHTIDQSWSLPENPVPEPGTGGVITRFHELRKEVKREKKLVR-----KED 175
Query: 170 KEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCE 229
+ PTLAEL L +ELRRL+ +GI +RKKLK+GKAGITEGIVNGIHERWR AEVVKI CE
Sbjct: 176 ERAPTLAELTLPEEELRRLKGIGIQIRKKLKVGKAGITEGIVNGIHERWRRAEVVKIRCE 235
Query: 230 DLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPN 289
D+C+LNMKRTHD LERKTGGLV+WRSGS IILYRGA+YKYPYFL+D + + +S D +
Sbjct: 236 DICKLNMKRTHDILERKTGGLVIWRSGSYIILYRGANYKYPYFLSDNNLPNDSSHDASSD 295
Query: 290 QLVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEE 349
+++E D + SSG K +G P NK +LI VG P ++R+QLPGEA+L EE
Sbjct: 296 SQMNNEEHDGKEVCSSGKGDVKSAGPMPANKIAPLSLIQGVGYPTRVRFQLPGEAQLEEE 355
Query: 350 ADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRR 409
ADRLLDGLGPRFTDWWGYDP P+DADLLPA VPGYRRPFRLLPYG++PKLTNDEMT LRR
Sbjct: 356 ADRLLDGLGPRFTDWWGYDPLPIDADLLPAVVPGYRRPFRLLPYGLKPKLTNDEMTVLRR 415
Query: 410 LGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGG 469
LGRPLPCHFALGRNR LQGLAA+++KLWEKCEIAKIAVKRG QNTNSEMMA+ELK LTGG
Sbjct: 416 LGRPLPCHFALGRNRKLQGLAASMIKLWEKCEIAKIAVKRGVQNTNSEMMAEELKNLTGG 475
Query: 470 TLLSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSND---------SKEEPELGNRH 520
TLLSRDREFIVFYRGKDFLPPA SSAIE RRK+ + EE ELG
Sbjct: 476 TLLSRDREFIVFYRGKDFLPPAVSSAIEARRKYGIHRGKQKIDHHRLAINAEESELGT-S 534
Query: 521 DNSGDNTQDEFGCTNDQKSTMHSEQKERRSAEVAIRRTNIRLSRVLEKKAEAEKLLAELE 580
+++ D D T+DQK+ S+++ RSAE + RTNI+LS LEKK AEKLLAELE
Sbjct: 535 EHASDKDCD---GTDDQKTNSLSKRRMLRSAEAVVERTNIKLSMALEKKERAEKLLAELE 591
Query: 581 EER-PEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVK 639
E + P+Q E+DKEGITEEERYMLRKVGLRMK FLL+GRRG+FDGTVENMHLHWK+RELVK
Sbjct: 592 EAQIPQQPEIDKEGITEEERYMLRKVGLRMKPFLLLGRRGIFDGTVENMHLHWKYRELVK 651
Query: 640 IISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTK 699
IIS R IE ARTLE ESGGILVAVERV+KGYAII+YRGKNY+RPA LRP+TLL K
Sbjct: 652 IISNGRSIEDIHGVARTLEAESGGILVAVERVSKGYAIIMYRGKNYKRPASLRPQTLLNK 711
Query: 700 REAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLV---KDKEANSLETIDESILPLVKEE 756
REA+KRSLEAQRR+SLKLHVL LTRNI++LK QLV KDKE NS + +D+S L L
Sbjct: 712 REALKRSLEAQRRESLKLHVLRLTRNIDELKHQLVSRIKDKETNSKQLVDKSRLHL---- 767
Query: 757 IGDMQPAECMRSDTSHEVNVQARGECGADLTSTESNDTGDATIDGPPAIQQDKQTESLTH 816
AR GAD+ S+D D++ D DK+ + +
Sbjct: 768 ---------------------ARERYGADVILIHSSDGMDSSRDSLQTSHNDKRIDFPSM 806
Query: 817 NGISINEIESKSSLKSVSKESQLNMIADFFAEGVASGTSSCPDNSMQEVMEYNTIVDAEQ 876
+E + S +SV KE + N++ D EG T+ D Q IV+ E
Sbjct: 807 CDSDTDEANPEPSSESVLKEIETNVLTDMNEEG--ECTTCSEDLVSQGETSCYAIVNHE- 863
Query: 877 CSSDNEPRESSIESAKSRSSENEPIEQSFELAKGRSGLSTPIGTGNVWNENNSRAIQLSN 936
E ESS++S+K +E +P Q P+ T + NE RA LSN
Sbjct: 864 -----ETMESSVKSSK---NEFKPPVQR------------PVDTRS--NEMPFRAAPLSN 901
Query: 937 RDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSVQEV 996
R+RLLLRKQALRMKKRPV+AVGRSNIVTGVAK IKAHF+K+PLAIVNVKGRAKGTSVQEV
Sbjct: 902 RERLLLRKQALRMKKRPVIAVGRSNIVTGVAKTIKAHFQKHPLAIVNVKGRAKGTSVQEV 961
Query: 997 VAKLE 1001
+ KLE
Sbjct: 962 IFKLE 966
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225452572|ref|XP_002275511.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255552728|ref|XP_002517407.1| conserved hypothetical protein [Ricinus communis] gi|223543418|gb|EEF44949.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|30678323|ref|NP_186786.2| CRM family member 2 [Arabidopsis thaliana] gi|22531018|gb|AAM97013.1| unknown protein [Arabidopsis thaliana] gi|37202002|gb|AAQ89616.1| At3g01370 [Arabidopsis thaliana] gi|332640136|gb|AEE73657.1| CRM family member 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|6692258|gb|AAF24608.1|AC010870_1 unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|449459492|ref|XP_004147480.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449515235|ref|XP_004164655.1| PREDICTED: LOW QUALITY PROTEIN: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|224059986|ref|XP_002300024.1| predicted protein [Populus trichocarpa] gi|222847282|gb|EEE84829.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356573408|ref|XP_003554853.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|357496109|ref|XP_003618343.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago truncatula] gi|355493358|gb|AES74561.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago truncatula] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1013 | ||||||
| TAIR|locus:2096662 | 1011 | CFM2 "CRM family member 2" [Ar | 0.731 | 0.732 | 0.546 | 2.8e-233 | |
| TAIR|locus:2094997 | 848 | EMB1865 "embryo defective 1865 | 0.484 | 0.579 | 0.437 | 1.6e-117 | |
| TAIR|locus:2094558 | 881 | CFM3A "CRM family member 3A" [ | 0.168 | 0.194 | 0.563 | 8.3e-90 | |
| TAIR|locus:2181372 | 720 | CRS1 "ortholog of maize chloro | 0.369 | 0.519 | 0.415 | 1.3e-82 | |
| TAIR|locus:2123276 | 343 | AT4G13070 [Arabidopsis thalian | 0.130 | 0.384 | 0.421 | 2.8e-19 | |
| TAIR|locus:2056558 | 372 | AT2G28480 [Arabidopsis thalian | 0.292 | 0.795 | 0.261 | 7.1e-17 | |
| TAIR|locus:2094438 | 444 | LOH1 "LAG One Homologue 1" [Ar | 0.210 | 0.479 | 0.252 | 1.4e-14 | |
| TAIR|locus:2091458 | 491 | AT3G27550 [Arabidopsis thalian | 0.135 | 0.279 | 0.328 | 1.7e-14 | |
| TAIR|locus:2061604 | 701 | CAF1 [Arabidopsis thaliana (ta | 0.062 | 0.089 | 0.365 | 7.4e-12 | |
| TAIR|locus:2126694 | 405 | AT4G31010 [Arabidopsis thalian | 0.060 | 0.150 | 0.377 | 1.4e-08 |
| TAIR|locus:2096662 CFM2 "CRM family member 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1995 (707.3 bits), Expect = 2.8e-233, Sum P(2) = 2.8e-233
Identities = 421/770 (54%), Positives = 522/770 (67%)
Query: 66 SAIQRIADKLRSLGIVEQTTSKDDTLNPEPETRATDNAGEIFIPLPHRIPKYRVGHTIDD 125
SAIQRIA+KLRSLG VE+ T E ++ GEIF+PLP ++P +RVGHTID
Sbjct: 58 SAIQRIAEKLRSLGFVEEKHDSP-TRRITGEESGKNSPGEIFVPLPKQLPIHRVGHTIDT 116
Query: 126 SWSTPENPVPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELKLSGKEX 185
SWSTP PVP PG+G AI RY++L K V W + +KE++VP+LAEL L E
Sbjct: 117 SWSTPSYPVPKPGSGTAISRYHEL-KRV----WKKETEMERKKEEKVPSLAELTLPPAEL 171
Query: 186 XXXXXXXXXXXXXXXXXXXXXTEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLER 245
TEGIVNGIHERWR EVVKI CED+ R+NMKRTHD LE
Sbjct: 172 RRLRTVGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRTHDVLET 231
Query: 246 KTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGLDETKTHSS 305
KTGGLV+WRSGSKI+LYRG +Y+YPYF++D A+S + + D+G+ +++ S
Sbjct: 232 KTGGLVIWRSGSKILLYRGVNYQYPYFVSDRDLAHEAASG--ASSM--DQGVVDSREKQS 287
Query: 306 GADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEADRLLDGLGPRFTDWW 365
A+S+ PS TNK V+ L VGSPDK+R+QLPGE +LVEEADRLL+GLGPRFTDWW
Sbjct: 288 IAESSAPS---ITNKMVKPMLTQGVGSPDKVRFQLPGEVQLVEEADRLLEGLGPRFTDWW 344
Query: 366 GYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRN 425
YDP PVD DLLPA VP YRRPFRLLPYGV PKLT+DEMTT+RRLGRPLPCHFALGRNRN
Sbjct: 345 AYDPLPVDGDLLPAVVPDYRRPFRLLPYGVSPKLTDDEMTTIRRLGRPLPCHFALGRNRN 404
Query: 426 LQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGK 485
LQGLA AIVKLWEKCE+AKIAVKRG QNTNSE+MA+ELK LTGGTL+SRD++FIV YRGK
Sbjct: 405 LQGLAVAIVKLWEKCELAKIAVKRGVQNTNSELMAEELKWLTGGTLISRDKDFIVLYRGK 464
Query: 486 DFLPPAASSAIEERRKHEFSTSNDSKEEPELG-NRHDNSGDNTQDEFGC-TNDQKSTMHS 543
DFLP A SSAIEERR+ N S +L N + +++ DQK + +
Sbjct: 465 DFLPSAVSSAIEERRRQTMIMENSSVHGNKLTENEEEIKPRAVKEDIELEAKDQKDHIQT 524
Query: 544 EQ---KERRSAEVAIRRTNIRLSRVXXXXXXXXXXXXXXXXXR-PEQYEVDKEGITEEER 599
Q ++R S E + +T+++LS P+ ++DKEGIT +E+
Sbjct: 525 HQMKSRQRNSPEAILEKTSMKLSMALEKKANAEKVLADLENRESPQLSDIDKEGITNDEK 584
Query: 600 YMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEV 659
YMLRK+GL+MK FLL+GRRGVFDGT+ENMHLHWK+RELVKII + IEAA + A LE
Sbjct: 585 YMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICNEYSIEAAHKVAEILEA 644
Query: 660 ESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHV 719
ESGGILVAVE V+KGYAII+YRGKNYERP CLRP+TLL+KREA+KRS+EAQRR+SLKLHV
Sbjct: 645 ESGGILVAVEMVSKGYAIIVYRGKNYERPQCLRPQTLLSKREALKRSVEAQRRKSLKLHV 704
Query: 720 LELTRNIEKLKLQLVKDKEANSLETIDESILPLVKEEIGDM--QPA---ECMRSDTSHEV 774
L+L+ NIE+L QLV+D N + ES +V+EE + +P E + S ++
Sbjct: 705 LKLSNNIEELNRQLVEDSATNETWSDGESSNMMVEEETENQHTEPEKAREKIELGYSSDL 764
Query: 775 NVQARGECGADLTSTESNDTGDATIDGPPAIQQDKQ--TESLTHNGISIN 822
+V + GE + +S D Q+D+ S H G S++
Sbjct: 765 SVPSSGE---ENWEDDSEGEVDPLTTSSQEYQEDESESASSQRHEGNSLD 811
|
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| TAIR|locus:2094997 EMB1865 "embryo defective 1865" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2094558 CFM3A "CRM family member 3A" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2181372 CRS1 "ortholog of maize chloroplast splicing factor CRS1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2123276 AT4G13070 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2056558 AT2G28480 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2094438 LOH1 "LAG One Homologue 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2091458 AT3G27550 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2061604 CAF1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2126694 AT4G31010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1013 | |||
| smart01103 | 84 | smart01103, CRS1_YhbY, Escherichia coli YhbY is as | 6e-25 | |
| pfam01985 | 84 | pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain | 2e-23 | |
| smart01103 | 84 | smart01103, CRS1_YhbY, Escherichia coli YhbY is as | 2e-18 | |
| smart01103 | 84 | smart01103, CRS1_YhbY, Escherichia coli YhbY is as | 3e-18 | |
| pfam01985 | 84 | pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain | 2e-17 | |
| pfam01985 | 84 | pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain | 5e-16 | |
| COG1534 | 97 | COG1534, COG1534, Predicted RNA-binding protein co | 6e-08 | |
| smart01103 | 84 | smart01103, CRS1_YhbY, Escherichia coli YhbY is as | 5e-07 | |
| pfam01985 | 84 | pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain | 1e-06 | |
| TIGR00253 | 95 | TIGR00253, RNA_bind_YhbY, putative RNA-binding pro | 8e-05 | |
| PRK10343 | 97 | PRK10343, PRK10343, RNA-binding protein YhbY; Prov | 4e-04 |
| >gnl|CDD|198171 smart01103, CRS1_YhbY, Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly | Back alignment and domain information |
|---|
Score = 99.1 bits (248), Expect = 6e-25
Identities = 30/84 (35%), Positives = 47/84 (55%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+GK+ R LR+L L+ ++IGK G+TEG++ I E E++K+ R + K
Sbjct: 1 LTGKQKRYLRSLAHHLKPVVQIGKNGLTEGVLEEIDEALEKHELIKVKVLGNDREDRKEI 60
Query: 240 HDSLERKTGGLVVWRSGSKIILYR 263
+ L +TG +V G I+LYR
Sbjct: 61 AEELAEETGAELVQVIGKTIVLYR 84
|
GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome. Length = 84 |
| >gnl|CDD|190184 pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain | Back alignment and domain information |
|---|
| >gnl|CDD|198171 smart01103, CRS1_YhbY, Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly | Back alignment and domain information |
|---|
| >gnl|CDD|198171 smart01103, CRS1_YhbY, Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly | Back alignment and domain information |
|---|
| >gnl|CDD|190184 pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain | Back alignment and domain information |
|---|
| >gnl|CDD|190184 pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain | Back alignment and domain information |
|---|
| >gnl|CDD|224451 COG1534, COG1534, Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >gnl|CDD|198171 smart01103, CRS1_YhbY, Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly | Back alignment and domain information |
|---|
| >gnl|CDD|190184 pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain | Back alignment and domain information |
|---|
| >gnl|CDD|129355 TIGR00253, RNA_bind_YhbY, putative RNA-binding protein, YhbY family | Back alignment and domain information |
|---|
| >gnl|CDD|182393 PRK10343, PRK10343, RNA-binding protein YhbY; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1013 | |||
| KOG1990 | 564 | consensus Poly(A)-specific exoribonuclease PARN [R | 100.0 | |
| PRK10343 | 97 | RNA-binding protein YhbY; Provisional | 99.91 | |
| TIGR00253 | 95 | RNA_bind_YhbY putative RNA-binding protein, YhbY f | 99.91 | |
| PF01985 | 84 | CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR | 99.9 | |
| PRK10343 | 97 | RNA-binding protein YhbY; Provisional | 99.89 | |
| COG1534 | 97 | Predicted RNA-binding protein containing KH domain | 99.89 | |
| PF01985 | 84 | CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR | 99.89 | |
| TIGR00253 | 95 | RNA_bind_YhbY putative RNA-binding protein, YhbY f | 99.89 | |
| COG1534 | 97 | Predicted RNA-binding protein containing KH domain | 99.85 | |
| KOG1990 | 564 | consensus Poly(A)-specific exoribonuclease PARN [R | 99.78 |
| >KOG1990 consensus Poly(A)-specific exoribonuclease PARN [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-63 Score=575.14 Aligned_cols=512 Identities=44% Similarity=0.642 Sum_probs=445.2
Q ss_pred ccCCCchhhccCCHHHHHHHHhcccCCCCeEEeCCCCCCHHHHHHHHHHHHhCCeEEEEEcCCchhhHHHHHHHHHHHhC
Q 001786 169 EKEVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTG 248 (1013)
Q Consensus 169 ~~~~PtlAEltLt~kErr~LRklA~~Lkp~V~IGK~GLTd~VVeeI~~aWkk~ELVKIKv~~~~~~dmk~~aE~LE~kTG 248 (1013)
... |++|++++...++.+||..|..+.-.+ +++|+|+.+++.|+..|+.+|+++++|......+|.+++++++..||
T Consensus 4 ~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~y~k~k~~~~~~~~~q~~~~~~~~~~~~~~~~~~~ 80 (564)
T KOG1990|consen 4 FES-LSLAELTVDEADLRRLRLVATGMTSAP--WKAGSTFDTVEAIYLKWKDNEEVYLKFQFGLCLFMKRSHEALEMSTG 80 (564)
T ss_pred ccc-hhHHHhhcCHHHHHHHhhhhccceecc--cccccchhhhHHHHHHHHhhhhhheeeccccchhHHHhhhHhhccCC
Confidence 445 999999999999999999999998877 99999999999999999999999999998888999999999999999
Q ss_pred C-EEEEEECcEEEEEecCCCCCCccccCCCCCCCCCCCCCCCcccccccccccccccCCCCCCCCCCCCCCchhhhhhhc
Q 001786 249 G-LVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLI 327 (1013)
Q Consensus 249 G-~VVqriG~tiVLYRGknY~~P~~~~~~~~~~e~~~~~~~~~~~d~e~~~~~~~~~ss~~~~~~~g~~~e~~~~~~~l~ 327 (1013)
| -+||+.|.....|++..|..|..-.... ++ .....|
T Consensus 81 ~n~~~~~~g~~~s~~~~~~~~~~~~~~~~~--------------~~---------------------------~~~~~~- 118 (564)
T KOG1990|consen 81 GNFVVWSRGDSISSPEFLCQRSPVDFVARQ--------------QE---------------------------NQAGKW- 118 (564)
T ss_pred CceeeeecCccccCCccceeecchhhhhhh--------------ch---------------------------hhhhhh-
Confidence 9 9999999999999888887764322210 00 000000
Q ss_pred cccCCCCccccCCcchhhhHHHHHHhhcccCCCccCCCCCCCCccCCCCCCcccCCCCCCcccCCCCCCCCCCHHHHHHH
Q 001786 328 HSVGSPDKLRYQLPGEAELVEEADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTL 407 (1013)
Q Consensus 328 ~~~~~~~~~~~~~p~E~~~e~E~~~LLd~LGPRF~dW~g~~PlPVDAdLLP~~Vpgyk~PfR~lP~gvr~~LT~eErt~L 407 (1013)
...++.+.+.+++++||+|.+||+.+|+|+|+|++|++||+|.+|||.+|+|++++||..|.+++
T Consensus 119 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~i~~~~~p~r~l~~~~~~~l~~~~~~~~ 183 (564)
T KOG1990|consen 119 ---------------PSELEKEKNELLDSLGPELSDWGGSDRLSVDADLLPEKIPDYMRPFRTLPVGSPPLLTSIESTLL 183 (564)
T ss_pred ---------------HHHHHHHHHHHhhccCcccccCCCCCCccchhhhchhhhhcccChhccCCCCChhhhhhHHHHHH
Confidence 13456789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCceEEeccCcchHHHHHHHHHHhhcCcceEEEecCCCCCchHHHHHHHH--HhhhCCEEEEeeCCEEEEEcCC
Q 001786 408 RRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQEL--KRLTGGTLLSRDREFIVFYRGK 485 (1013)
Q Consensus 408 Rklar~lpph~~LGRnGv~~GLa~aI~k~Wkk~ELVKI~~K~gv~~td~e~ma~eL--k~lTGGvLVsr~~~~IIlYRGK 485 (1013)
|++|..+||||++|+++..+|++.+|+.+|++|+.+++.+++|+..+..+.+|..| ...||++||++|+.++|+|||+
T Consensus 184 r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~k~~~~k~~~~rg~~~~~~~~~a~~l~~~~~tg~~lv~hN~~~dv~y~~~ 263 (564)
T KOG1990|consen 184 RRLGYKLPPHFALGRSRKLQGLAVAMVSFWEKHEFAKILIKRGVLETRKERMADELQELLLTGKVLVLHNKLLDVMYRYK 263 (564)
T ss_pred HHhcccccccceehhccccccchhHHHHHHHHHHHHHHHHHhcchhhhccchHHHHHHHHhcCCeEEeeccceeeeeehh
Confidence 99999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred CCCChhhhhHHHHHhhhhccccCCCCCccccCCC--CCCCCCCCccccc---ccccc----cc--chhhHHHHHHhHHHH
Q 001786 486 DFLPPAASSAIEERRKHEFSTSNDSKEEPELGNR--HDNSGDNTQDEFG---CTNDQ----KS--TMHSEQKERRSAEVA 554 (1013)
Q Consensus 486 df~p~~V~~~L~eR~~l~~s~~~~~~~~~e~~~~--~~~s~~~t~~~~~---~~~~~----~~--~~~~~~~~~~~~~~~ 554 (1013)
+|++ .+..+|.++++.....+.+.......... ++....+|..++. +.++. .. .....+.+....++.
T Consensus 264 ~Fl~-~lp~~l~~f~~~~~~fp~~~~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 342 (564)
T KOG1990|consen 264 NFLS-PLPSTLEEFTDSSSMFPNIEDTKRLAKLSEYQKLNLKATLLELARAKAKKEKEIERRSISSRLKLEFEKASSEKL 342 (564)
T ss_pred hccc-ccchhHHHhhhhhhhhhhhHHHHHhhccccccchhhhhhHHHHHHHhcccccCcccccccchhhhhhhccchhhH
Confidence 9999 89999999988622222211100011111 1112334444332 11111 01 011223344566788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc-cCCCCcccCcCCCCHHHHHHHHhcccCCCceEEeccCCCCHHHHHHHHHHHh
Q 001786 555 IRRTNIRLSRVLEKKAEAEKLLAELEE-ERPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWK 633 (1013)
Q Consensus 555 ~k~~e~kL~~~~~K~~kae~ll~kle~-~~P~~~~~d~E~LT~eERk~LRkiGhkmkPvV~IGK~GVtdgVIe~Ih~Alk 633 (1013)
.+.+..++..+..|...++..+++++. ..|.+..+|+|.+|.+++.+++++|.+|++++.+|++|+|+|++.+||+||+
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~t~ee~~~~~k~g~k~~~~~~~~rrg~f~g~i~n~~l~wk 422 (564)
T KOG1990|consen 343 TEAIFHKLEKAKKKLASANRILAKLEDPKIPAELRYDPESITEEERLMLRKVGLKMKRRLLSGRRGVFDGVIENMHLHWK 422 (564)
T ss_pred HHHHHHHHhhhhhhccchhhhhhcccccccccccccchhhcChHHHHHHHHHHHhhccccccCCcccccceeecchhhhh
Confidence 899999999999999999999999998 8999998999999999999999999999999999999999999999999999
Q ss_pred ccceEEEEecCCCH-HHHHHHHHHHHHHhCCEEEeeeecccCcEEEEEccCCCCCCCcCCCcccccHHHHHHHhHHHHHH
Q 001786 634 HRELVKIISKQRKI-EAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRR 712 (1013)
Q Consensus 634 ~rELIKVk~~~n~~-ed~keiA~~Lee~Sgg~LVqv~kv~IG~tIILYRgKNY~rP~~l~P~~lLtKrkAl~rs~e~qr~ 712 (1013)
+||++|++|+.... .++++.|..++.++|+++|+++++..|++|+.|||+||++|..++|.++|+||+|+.+|+++|++
T Consensus 423 ~~e~~k~i~~~~~~~~~~~~~a~~le~esg~~~v~~~~~~~~~ai~~yr~k~y~~p~~l~P~~~l~~~k~~~~~~~~~~~ 502 (564)
T KOG1990|consen 423 SRELVKVICKEKNLPSQVKQYASALERESGGILVSIDKNPKGYAIIAYRGKNYDRPTSLRPRNLLSRRKALERSLEEQRK 502 (564)
T ss_pred hcccceeeeccccccHHHHHHHHHHHHHhCCceeeeccCCchhhHHHhhhhhccCCcccCchhhhcccCCccccHHHHHH
Confidence 99999999999877 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 001786 713 QSLKLHVLELTRNIEKLKLQLVKDKEANS 741 (1013)
Q Consensus 713 ~sl~~~i~~l~~~i~~l~~~l~~~~~~~~ 741 (1013)
++++.||..+..++++++.++..+...+.
T Consensus 503 ~a~~~~i~~~~~~~e~~~~~~~~~~~~~~ 531 (564)
T KOG1990|consen 503 EALKSHISDLEQEIEQLQASVEAMPAINK 531 (564)
T ss_pred HHHhhhcchhhhhHHHhhcchhccccccc
Confidence 99999999999999999999877655554
|
|
| >PRK10343 RNA-binding protein YhbY; Provisional | Back alignment and domain information |
|---|
| >TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family | Back alignment and domain information |
|---|
| >PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain | Back alignment and domain information |
|---|
| >PRK10343 RNA-binding protein YhbY; Provisional | Back alignment and domain information |
|---|
| >COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain | Back alignment and domain information |
|---|
| >TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family | Back alignment and domain information |
|---|
| >COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG1990 consensus Poly(A)-specific exoribonuclease PARN [Replication, recombination and repair] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1 Length = 104 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 2e-18
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+GK+ R LR+L + +IGK GI E ++ I + + E++K+ + K
Sbjct: 2 LTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKEL 61
Query: 240 HDSLERKTGGLVVWRSGSKIILYR 263
++L T +V GS I++YR
Sbjct: 62 AETLSEATRSELVQVIGSMIVIYR 85
|
| >1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1 Length = 104 | Back alignment and structure |
|---|
| >1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1 Length = 104 | Back alignment and structure |
|---|
| >1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A Length = 98 | Back alignment and structure |
|---|
| >1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A Length = 98 | Back alignment and structure |
|---|
| >1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A Length = 98 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1013 | ||||
| d1rq8a_ | 96 | d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphy | 2e-23 | |
| d1rq8a_ | 96 | d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphy | 2e-18 | |
| d1rq8a_ | 96 | d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphy | 8e-16 | |
| d1rq8a_ | 96 | d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphy | 2e-09 | |
| d1jo0a_ | 97 | d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus i | 8e-23 | |
| d1jo0a_ | 97 | d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus i | 3e-18 | |
| d1jo0a_ | 97 | d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus i | 7e-16 | |
| d1jo0a_ | 97 | d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus i | 4e-08 |
| >d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]} Length = 96 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: IF3-like superfamily: YhbY-like family: YhbY-like domain: Hypothetical protein SAV1595 species: Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]
Score = 93.2 bits (232), Expect = 2e-23
Identities = 25/89 (28%), Positives = 44/89 (49%)
Query: 180 LSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L+GK+ R LR+L + +IGK GI E ++ I + + E++K+ + K
Sbjct: 2 LTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKEL 61
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYK 268
++L T +V GS I++YR +
Sbjct: 62 AETLSEATRSELVQVIGSMIVIYRESKEN 90
|
| >d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]} Length = 96 | Back information, alignment and structure |
|---|
| >d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]} Length = 96 | Back information, alignment and structure |
|---|
| >d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]} Length = 96 | Back information, alignment and structure |
|---|
| >d1jo0a_ d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus influenzae [TaxId: 727]} Length = 97 | Back information, alignment and structure |
|---|
| >d1jo0a_ d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus influenzae [TaxId: 727]} Length = 97 | Back information, alignment and structure |
|---|
| >d1jo0a_ d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus influenzae [TaxId: 727]} Length = 97 | Back information, alignment and structure |
|---|
| >d1jo0a_ d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus influenzae [TaxId: 727]} Length = 97 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1013 | |||
| d1rq8a_ | 96 | Hypothetical protein SAV1595 {Staphylococcus aureu | 99.92 | |
| d1jo0a_ | 97 | YhbY homologue HI1333 {Haemophilus influenzae [Tax | 99.91 | |
| d1jo0a_ | 97 | YhbY homologue HI1333 {Haemophilus influenzae [Tax | 99.91 | |
| d1rq8a_ | 96 | Hypothetical protein SAV1595 {Staphylococcus aureu | 99.91 |
| >d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: IF3-like superfamily: YhbY-like family: YhbY-like domain: Hypothetical protein SAV1595 species: Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]
Probab=99.92 E-value=1.9e-24 Score=176.41 Aligned_cols=96 Identities=22% Similarity=0.362 Sum_probs=65.3
Q ss_pred CCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEEECC
Q ss_conf 99999999999612477745870567888779999999986055287992589999999999999989399899622126
Q 001786 593 GITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVN 672 (1013)
Q Consensus 593 ~LT~eERk~LRkiGhklkpvV~IGK~GVtdgVIe~Ih~alk~rELVKVkv~~~~~ed~keiA~~Le~~SGgiLVqv~kv~ 672 (1013)
|||++||++||++||+|+|+|+||++|||++|+.+++.||+.||||||+|.+++.+++++++.+|++.+||++||+
T Consensus 1 mLt~kqr~~LR~~ah~l~p~v~IGk~Glt~~vi~ei~~~l~~~ELIKvk~~~~~~~~~~~~~~~l~~~t~a~~V~~---- 76 (96)
T d1rq8a_ 1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQV---- 76 (96)
T ss_dssp CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEE----
T ss_pred CCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEE----
T ss_conf 9698999999997668999899889987899999999999759715999657998999999999999869999999----
Q ss_pred CCCEEEEECCCCCCCCCCCCC
Q ss_conf 573999971699999986787
Q 001786 673 KGYAIILYRGKNYERPACLRP 693 (1013)
Q Consensus 673 IG~tIILYRgKNY~rP~~l~P 693 (1013)
||+++||||++++. |+..+|
T Consensus 77 iG~~~vlyR~~~~~-~ki~LP 96 (96)
T d1rq8a_ 77 IGSMIVIYRESKEN-KEIELP 96 (96)
T ss_dssp ETTEEEEEECCCSC-CSCCCC
T ss_pred ECCEEEEEECCCCC-CCCCCC
T ss_conf 89999999579889-888897
|
| >d1jo0a_ d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
| >d1jo0a_ d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
| >d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]} | Back information, alignment and structure |
|---|