Query 001787
Match_columns 1013
No_of_seqs 300 out of 573
Neff 3.6
Searched_HMMs 29240
Date Tue Mar 26 16:10:42 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001787.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1084-1088//hhsearch_pdb/001787hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 1.0 1 1 215.5 14.3 114 111-224 6-121 (130)
2 4i1k_A B3 domain-containing tr 1.0 1 1 154.3 11.4 100 114-223 44-145 (146)
3 1yel_A AT1G16640; CESG, protei 1.0 1 1 122.9 10.0 96 115-221 7-102 (104)
4 4b8c_D Glucose-repressible alc 1.0 1 1 64.0 4.8 106 461-581 21-128 (727)
5 1na6_A Ecorii, restriction end 1.0 1 1 44.4 6.2 93 115-208 17-123 (404)
6 3iot_A Maltose-binding protein 1.0 1 1 36.7 1.2 56 511-576 379-434 (449)
7 2jng_A Cullin-7, CUL-7; P53 bi 1.0 1 1 21.1 3.6 74 266-353 6-79 (105)
8 3p8d_A Medulloblastoma antigen 1.0 1 1 20.2 4.2 56 279-352 3-58 (67)
9 3qii_A PHD finger protein 20; 1.0 1 1 19.4 4.2 52 282-351 21-72 (85)
10 2kfw_A FKBP-type peptidyl-prol 1.0 1 1 18.9 5.3 105 195-312 1-114 (196)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=1.00 E-value=1 Score=215.50 Aligned_cols=114 Identities=31% Similarity=0.507 Sum_probs=105.1
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCEEECHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCEEECCCCHH
Q ss_conf 79997307999545567998784045020252219999999999960899984799837989999489974034255111
Q 001787 111 QNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSV 190 (1013)
Q Consensus 111 ~~~~~~~sF~KtLTaSDVst~GgLsIPkr~AE~~FPpLD~s~~~PsqeLvvkDlhGkeW~FRhiYRg~prRhlLTtGWS~ 190 (1013)
..++..++|+|+||+|||+++++|+||+++|++|||+++....+++++|.++|.+|++|+|||+||+++++|+|++||+.
T Consensus 6 ~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~ 85 (130)
T 1wid_A 6 SGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSR 85 (130)
T ss_dssp --CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHH
T ss_pred CCCCCCCEEEEEEEHHHCCCCCEEEECHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCHHH
T ss_conf 89998624999985577189777996789999668865444578838999995899999999999789996388377488
Q ss_pred HHCCCCCCCCCEEEEEECC--CCCEEEEEEECCCCC
Q ss_conf 2113788889859999737--972999999646889
Q 001787 191 FVSTKRLFAGDSVLFIRDE--KSQLLLGIRRANRQQ 224 (1013)
Q Consensus 191 FVk~KkLvaGDsVVF~R~e--~GeL~VGIRRA~r~~ 224 (1013)
||++|+|++||+|+|++++ ++.|+|+|||+.+..
T Consensus 86 FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 86 FVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp HHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred HHHHCCCCCCCEEEEEEECCCCCEEEEEEEECCCCC
T ss_conf 778719988989999995389968999999899998
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=154.33 Aligned_cols=100 Identities=23% Similarity=0.299 Sum_probs=88.6
Q ss_pred CCCEEEEEECCCCCCCCCCCEEECHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCEEECCCCHHHHC
Q ss_conf 97307999545567998784045020252219999999999960899984799837989999489974034255111211
Q 001787 114 QPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVS 193 (1013)
Q Consensus 114 ~~~~sF~KtLTaSDVst~GgLsIPkr~AE~~FPpLD~s~~~PsqeLvvkDlhGkeW~FRhiYRg~prRhlLTtGWS~FVk 193 (1013)
+..++|+|+||+||+.++++|.||+.+|+++||..+ .++.++|. |+.|.|+|+|++ .++.|++||+.||+
T Consensus 44 s~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~-------~~i~L~~~-gk~W~v~~~~~~--~~~~ls~GW~~Fv~ 113 (146)
T 4i1k_A 44 PTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS-------GFIKVQLA-EKQWPVRCLYKA--GRAKFSQGWYEFTL 113 (146)
T ss_dssp CSSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC-------SEEEEEET-TEEEEEEEEEET--TEEEECTTHHHHHH
T ss_pred CCCCEEEEEECCHHCCCCCEEEECHHHHHHHCCCCC-------EEEEEEEC-CCEEEEEEEEEC--CCEEECCCHHHHHH
T ss_conf 999989999785661898679909999997488888-------37999979-947898999958--90787776389888
Q ss_pred CCCCCCCCEEEEEECCCC--CEEEEEEECCCC
Q ss_conf 378888985999973797--299999964688
Q 001787 194 TKRLFAGDSVLFIRDEKS--QLLLGIRRANRQ 223 (1013)
Q Consensus 194 ~KkLvaGDsVVF~R~e~G--eL~VGIRRA~r~ 223 (1013)
+++|++||+|+|...++. .|.|.|.|+...
T Consensus 114 dn~L~~GD~cvFeli~~~~~~f~V~IfR~~e~ 145 (146)
T 4i1k_A 114 ENNLGEGDVCVFELLRTRDFVLKVTAFRVNEY 145 (146)
T ss_dssp HTTCCTTCEEEEEECSSSSCEEEEEEECCC--
T ss_pred HCCCCCCCEEEEEEECCCCEEEEEEEEECCCC
T ss_conf 75999898999999369865999999944578
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=1.00 E-value=1 Score=122.95 Aligned_cols=96 Identities=25% Similarity=0.397 Sum_probs=83.4
Q ss_pred CCEEEEEECCCCCCCCCCCEEECHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCEEECCCCHHHHCC
Q ss_conf 73079995455679987840450202522199999999999608999847998379899994899740342551112113
Q 001787 115 PTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVST 194 (1013)
Q Consensus 115 ~~~sF~KtLTaSDVst~GgLsIPkr~AE~~FPpLD~s~~~PsqeLvvkDlhGkeW~FRhiYRg~prRhlLTtGWS~FVk~ 194 (1013)
..+.|.|+|+++|. ..+|.||+++++.+.+.+. ..+.++|..|++|++++.+++ ++.+|++||..||++
T Consensus 7 ~~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~~-------~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~ 75 (104)
T 1yel_A 7 GEVQFMKPFISEKS--SKSLEIPLGFNEYFPAPFP-------ITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKD 75 (104)
T ss_dssp CCEEEEEECCHHHH--TTCEECCHHHHTTCCCCCC-------SEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHH
T ss_pred CCCCEEEEECCCCC--CCEEECCHHHHHHCCCCCC-------CEEEEECCCCCEEEEEEEEEC--CCEEECCCHHHHHHH
T ss_conf 89878999877775--5318889999986486699-------889999799999999999989--949986294999997
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEEECC
Q ss_conf 788889859999737972999999646
Q 001787 195 KRLFAGDSVLFIRDEKSQLLLGIRRAN 221 (1013)
Q Consensus 195 KkLvaGDsVVF~R~e~GeL~VGIRRA~ 221 (1013)
++|++||.|+|...++..+.|.|.|..
T Consensus 76 ~~L~~GD~lvF~~~~~~~f~V~If~~s 102 (104)
T 1yel_A 76 NNLEDGKYLQFIYDRDRTFYVIIYGHN 102 (104)
T ss_dssp HTCCTTCEEEEEECSSSEEEEEEECSS
T ss_pred CCCCCCCEEEEEECCCCEEEEEEECCC
T ss_conf 599989899999858976999997898
No 4
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=1.00 E-value=1 Score=63.96 Aligned_cols=106 Identities=22% Similarity=0.266 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCH--HHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC
Q ss_conf 75325788960000359999988537--8999998329212332117124798898964204401578777664103679
Q 001787 461 PNLQFSKANPQNQVNQLPQSPIAWTQ--QQQLQHLLQNPLNQQQQQHPQLHQQRQQQQQLLHPQQSQQQQQQQQNHHHHN 538 (1013)
Q Consensus 461 ~~~~~~~~~~~~~~~~l~~~~~~~~~--qqq~~~~~~~~~qqqQqq~~q~q~q~Qq~Q~q~~~Q~~q~~qQqqqq~h~h~ 538 (1013)
+.+-+|..+..-+ .++-.+.+--+. ++|+|.... +.+++.+++++++++++++++..|+ |.+|||||+.
T Consensus 21 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~q~-q~~~qqq~~~---- 91 (727)
T 4b8c_D 21 VNINVNASNPLLH-PHLDDPSLLNNPIWKLQLHLAAV---SAQSLGQPNIYARQNAMKKYLATQQ-AQQAQQQAQQ---- 91 (727)
T ss_dssp ----CCSSCTTTS-GGGTSCCCTTSHHHHHHHHHHHH---HHHSTTSTTHHHHHHHHHHHC-------------------
T ss_pred CCCCCCCCCCCCC-CCCCCCHHCCCCHHHHHHHHHHH---CHHCCCCCHHHHHHHHHHHHHHHHC-HHHHHHHHHH----
T ss_conf 5434456885556-77788021048227777788763---3121266049999999998875013-0667888776----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCC
Q ss_conf 9999999999999999998877999999999751443102110
Q 001787 539 QQPPPPPQLQPSPTPPHSQSQSQSPVPQRPQQQPQQQQQQPQQ 581 (1013)
Q Consensus 539 ~q~~~~~qq~~q~~~~~~~~~~~~q~q~q~qqQ~qqq~Qqqqq 581 (1013)
++++++..++..+.++.++.+++.|+|++++.+...+
T Consensus 92 ------q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 128 (727)
T 4b8c_D 92 ------QAQQQVPGPFGPGPQAAPPALQPTDFQQSHIAEASKS 128 (727)
T ss_dssp -------------------------------------------
T ss_pred ------HCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHH
T ss_conf ------0667666765668666752000232126566533342
No 5
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=1.00 E-value=1 Score=44.43 Aligned_cols=93 Identities=22% Similarity=0.269 Sum_probs=68.0
Q ss_pred CCEEEEEECCCCCCCCC----CCEEECHHHHHHCCCCCC-CCCCCCCCEEEE--EECCCCEEEEEEEEEC------CCCC
Q ss_conf 73079995455679987----840450202522199999-999999608999--8479983798999948------9974
Q 001787 115 PTEFFCKTLTASDTSTH----GGFSVPRRAAEKIFPPLD-YSMQPPAQEIVA--RDLHDTTWTFRHIYRG------QPKR 181 (1013)
Q Consensus 115 ~~~sF~KtLTaSDVst~----GgLsIPkr~AE~~FPpLD-~s~~~PsqeLvv--kDlhGkeW~FRhiYRg------~prR 181 (1013)
....|+|.|++.|++.+ .++.+|+......||.++ .....|...+.+ .|...-++.++.+|.+ ++..
T Consensus 17 ~~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnE 96 (404)
T 1na6_A 17 NYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNE 96 (404)
T ss_dssp SEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCE
T ss_pred CCHHEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCCCCC
T ss_conf 60413577224457887776444578568999863548986556776315778416888427789998326466898874
Q ss_pred EEECCCCH-HHHCCCCCCCCCEEEEEEC
Q ss_conf 03425511-1211378888985999973
Q 001787 182 HLLTTGWS-VFVSTKRLFAGDSVLFIRD 208 (1013)
Q Consensus 182 hlLTtGWS-~FVk~KkLvaGDsVVF~R~ 208 (1013)
|.||. |. .+.-.....+||-+||.+.
T Consensus 97 yRLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 97 KRITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred EEEEE-CCCCCCCCCCCCCCCEEEEEEE
T ss_conf 58840-2789865466888788999872
No 6
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=1.00 E-value=1 Score=36.66 Aligned_cols=56 Identities=36% Similarity=0.459 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 889896420440157877766410367999999999999999999988779999999997514431
Q 001787 511 QRQQQQQLLHPQQSQQQQQQQQNHHHHNQQPPPPPQLQPSPTPPHSQSQSQSPVPQRPQQQPQQQQ 576 (1013)
Q Consensus 511 q~Qq~Q~q~~~Q~~q~~qQqqqq~h~h~~q~~~~~qq~~q~~~~~~~~~~~~q~q~q~qqQ~qqq~ 576 (1013)
+.|+++.|...|++|.+|||||+. +++.+.++.+++....+.++++++.+.++..+
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (449)
T 3iot_A 379 KAFESLKSFQQQQQQQQQQQQQQQ----------QQPPPPPPPPPPPQLPQPPPQAQPLLPQQSYQ 434 (449)
T ss_dssp HHHHHHHHTC--------------------------------------------------------
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCC----------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 999999864643236567888999----------98798978887699999979899999988755
No 7
>2jng_A Cullin-7, CUL-7; P53 binding domain, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} SCOP: b.34.9.4 PDB: 2juf_A
Probab=1.00 E-value=1 Score=21.12 Aligned_cols=74 Identities=26% Similarity=0.255 Sum_probs=48.7
Q ss_pred CCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 95310357686987227654654535442046763202359988416898888899752045301567789999976556
Q 001787 266 SEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLW 345 (1013)
Q Consensus 266 sEFVVp~~kY~kAl~~~ws~GMRFKM~fEtEdss~rry~GTItgi~d~DP~rWp~S~WR~LqV~WDE~~~~~~~~RVSPW 345 (1013)
+|| -..+.|-.-+..+..+|||+||.=.-||-+. -=.|++. ++ -+ +-+ ..+|.|.... +.-.|+-=
T Consensus 6 sdF-~s~~~Ya~YVr~~l~pGM~VR~~~dyeev~~-GD~G~vl-~s-~~-----Gl~--~vQv~W~~~G---~TyWV~~~ 71 (105)
T 2jng_A 6 SEF-ASGNTYALYVRDTLQPGMRVRMLDDYEEISA-GDEGEFR-QS-NN-----GVP--PVQVFWESTG---RTYWVHWH 71 (105)
T ss_dssp GGS-SSSHHHHHHHHHHCCTTCEEEECSCBTTBCT-TCEEEEE-EE-CT-----TSS--EEEEEETTTT---EEEEEEGG
T ss_pred HHC-CCCHHHHHHHHHCCCCCCEEEEEHHHHHHCC-CCCEEEE-EC-CC-----CCC--CCEEEEHHCC---CEEEEEEE
T ss_conf 553-5500489999854897658752021554156-7742588-63-79-----984--1210003059---36898700
Q ss_pred CCCCCCCC
Q ss_conf 33434589
Q 001787 346 ETEPVVTP 353 (1013)
Q Consensus 346 EIEpv~~~ 353 (1013)
.||.+..+
T Consensus 72 ~~Ellg~~ 79 (105)
T 2jng_A 72 MLEILGFE 79 (105)
T ss_dssp GEEECCCC
T ss_pred HHHHCCCC
T ss_conf 11220785
No 8
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=20.18 Aligned_cols=56 Identities=11% Similarity=0.194 Sum_probs=42.9
Q ss_pred HHCCCCCCCEEEEEEECCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 72276546545354420467632023599884168988888997520453015677899999765563343458
Q 001787 279 MYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPVVT 352 (1013)
Q Consensus 279 l~~~ws~GMRFKM~fEtEdss~rry~GTItgi~d~DP~rWp~S~WR~LqV~WDE~~~~~~~~RVSPWEIEpv~~ 352 (1013)
|...|.+|+++..+| ++ .++|-++|++|... ....|.+++.. .+.|..=+|.|+..
T Consensus 3 ~~~~~~vGd~vmArW-~D---~~yYpA~I~si~~~----------~~Y~V~F~dG~----~etvk~~~ikp~~~ 58 (67)
T 3p8d_A 3 MSSEFQINEQVLACW-SD---CRFYPAKVTAVNKD----------GTYTVKFYDGV----VQTVKHIHVKAFSK 58 (67)
T ss_dssp --CCCCTTCEEEEEC-TT---SCEEEEEEEEECTT----------SEEEEEETTSC----EEEEEGGGEEECC-
T ss_pred CCCCCCCCCEEEEEC-CC---CCEEEEEEEEECCC----------CEEEEEEECCC----EEEEEHHHCCCCCC
T ss_conf 676244699999991-79---98756899998799----------72999994896----69971899442880
No 9
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=19.44 Aligned_cols=52 Identities=10% Similarity=0.213 Sum_probs=0.0
Q ss_pred CCCCCCEEEEEEECCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7654654535442046763202359988416898888899752045301567789999976556334345
Q 001787 282 QVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPVV 351 (1013)
Q Consensus 282 ~ws~GMRFKM~fEtEdss~rry~GTItgi~d~DP~rWp~S~WR~LqV~WDE~~~~~~~~RVSPWEIEpv~ 351 (1013)
.|.+|+++-.+| ++ .+||-++|++|. ++ ....|.+++.. .+.|..=+|.|+.
T Consensus 21 ~f~vGd~VlArW-~D---~~yYPAkI~sV~--------~~--~~YtV~F~DG~----~etvk~~~IKp~~ 72 (85)
T 3qii_A 21 EFQINEQVLACW-SD---CRFYPAKVTAVN--------KD--GTYTVKFYDGV----VQTVKHIHVKAFS 72 (85)
T ss_dssp CCCTTCEEEEEC-TT---SCEEEEEEEEEC--------TT--SEEEEEETTSC----EEEEEGGGEEECC
T ss_pred CCCCCCEEEEEE-CC---CCEEEEEEEEEC--------CC--CEEEEEEECCC----EEEECHHHCCCCC
T ss_conf 134599999993-89---988568999987--------99--71999993897----6896689943488
No 10
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=1.00 E-value=1 Score=18.90 Aligned_cols=105 Identities=17% Similarity=0.188 Sum_probs=0.0
Q ss_pred CCCCCCCEEEE---EECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECC------CCCC
Q ss_conf 78888985999---97379729999996468899988764578864422389999999539968999817------9999
Q 001787 195 KRLFAGDSVLF---IRDEKSQLLLGIRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNP------RASP 265 (1013)
Q Consensus 195 KkLvaGDsVVF---~R~e~GeL~VGIRRA~r~~~~~~ssv~ssdsm~~gvLAaAahaaat~~~F~V~Y~P------Ras~ 265 (1013)
+....||.|.+ .+.++|+.+-.-+.. .|...+.....-+--+.+|......+..++|..-| |...
T Consensus 1 M~i~~gd~V~v~Y~g~~~dG~~fdss~~~------~P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~~ 74 (196)
T 2kfw_A 1 MKVAKDLVVSLAYQVRTEDGVLVDESPVS------APLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDEN 74 (196)
T ss_dssp CCCCSSCEEEEEEEEEETTTEEEEECCTT------SCCEEESSSSSSCHHHHHHHSSSCTTCEEEEECSTTTTSSCCCTT
T ss_pred CCCCCCCEEEEEEEEEECCCCEEEECCCC------CCEEEEECCCCCCHHHHHHHCCCCCCCEEEEEECCHHHCCCCCHH
T ss_conf 97789999999999997999997736788------777999799982357999975899998899996907856878933
Q ss_pred CCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEEEEEEEECC
Q ss_conf 95310357686987227654654535442046763202359988416
Q 001787 266 SEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISD 312 (1013)
Q Consensus 266 sEFVVp~~kY~kAl~~~ws~GMRFKM~fEtEdss~rry~GTItgi~d 312 (1013)
.-+.||+..|.. ...+.+||+| .+++++. .+.++|+.|.+
T Consensus 75 lV~~vp~~~f~~--~~~~~~G~~~--~~~~~~G---~~~~~V~~v~~ 114 (196)
T 2kfw_A 75 LVQRVPKDVFMG--VDELQVGMRF--LAETDQG---PVPVEITAVED 114 (196)
T ss_dssp TCEEECGGGCCC--SSCCCTTCEE--EEEETTE---EEEEEBCCCCS
T ss_pred HEEEEEHHHCCC--CCCCCCCCEE--EEECCCC---CEEEEEEEECC
T ss_conf 199987999787--6675668789--9878999---58899999849
Done!