BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001788
(1013 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 63/111 (56%), Gaps = 6/111 (5%)
Query: 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKR 727
+F+GP VGK ++A AL+E + G MI + + E + T+ ++ E V+R
Sbjct: 524 FIFLGPTGVGKTELARALAESIFGDEESMIRI------DMSEYMEKHSTSGGQLTEKVRR 577
Query: 728 NPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778
P+SV+LL+ I++A V + + +E GRL DS GR + N I I+T++
Sbjct: 578 KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 14/156 (8%)
Query: 632 KVWWQQEAASAVATTVTQCKLG-NGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVS 690
+V Q EA AVA + + + G R GS LF+GP VGK ++A L+ +
Sbjct: 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGS-----FLFLGPTGVGKTELAKTLAATLF 613
Query: 691 GASPIMIPLGPRRDHEEPEVR--------VRGKTALDKIGEAVKRNPFSVILLEDIDEAD 742
MI + E+ V G ++ EAV+R P+SVIL ++I++A
Sbjct: 614 DTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAH 673
Query: 743 MVVRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778
V + + ++ GRL DS+GR + N + ILT++
Sbjct: 674 PDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSN 709
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/157 (30%), Positives = 76/157 (48%), Gaps = 14/157 (8%)
Query: 631 EKVWWQQEAASAVATTVTQCKLG-NGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELV 689
++V Q EA AVA + + + G R GS LF+GP VGK ++A L+ +
Sbjct: 14 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGS-----FLFLGPTGVGKTELAKTLAATL 68
Query: 690 SGASPIMIPLGPRRDHEEPEVR--------VRGKTALDKIGEAVKRNPFSVILLEDIDEA 741
MI + E+ V G ++ EAV+R P+SVIL + I++A
Sbjct: 69 FDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA 128
Query: 742 DMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778
V + + ++ GRL DS+GR + N + ILT++
Sbjct: 129 HPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSN 165
>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|F Chain F, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 311
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 14/157 (8%)
Query: 631 EKVWWQQEAASAVATTVTQCKLG-NGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELV 689
++V Q EA AVA + + + G R GS LF+GP VGK ++A L+ +
Sbjct: 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGS-----FLFLGPTGVGKTELAKTLAATL 71
Query: 690 SGASPIMIPLGPRRDHEEPEVR--------VRGKTALDKIGEAVKRNPFSVILLEDIDEA 741
I + E+ V G ++ EAV+R P+SVIL + I++A
Sbjct: 72 FDTEEAXIRIDXTEYXEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA 131
Query: 742 DMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778
V + + ++ GRL DS+GR + N + I T++
Sbjct: 132 HPDVFNILLQXLDDGRLTDSHGRTVDFRNTVIIXTSN 168
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 80/171 (46%), Gaps = 19/171 (11%)
Query: 618 DPDSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLGNG-KRRGAGSKGDMWLLFMGPDRV 676
D D+ K L L V+ Q +A A+ + + G G + + GS LF GP V
Sbjct: 445 DRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGS-----FLFAGPTGV 499
Query: 677 GKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVR------GKTALDKIG---EAVKR 727
GK ++ LS+ A I + ++ E R G D+ G +AV +
Sbjct: 500 GKTEVTVQLSK----ALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIK 555
Query: 728 NPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778
+P +V+LL++I++A V + + M+ G L D+ GR+ NV+ ++T +
Sbjct: 556 HPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTN 606
>pdb|1VL1|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase (Tm1154)
From Thermotoga Maritima At 1.70a Resolution
Length = 232
Score = 30.0 bits (66), Expect = 6.3, Method: Composition-based stats.
Identities = 33/151 (21%), Positives = 63/151 (41%), Gaps = 26/151 (17%)
Query: 601 PQNKLHESQNDQLQKPLDPD--SFKRLLKSLMEKVWWQQEAASAVATTV---TQCKLGNG 655
P N++H +D+ PLD D +F+ + + L + V T++ C+
Sbjct: 70 PWNRIHFFLSDERYVPLDSDQSNFRNINEVLFSRAKIPSGNVHYVDTSLPIEKACEKYER 129
Query: 656 KRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPL-GPRRDHEEPEVR--- 711
+ R A + D+ +L MGPD +++ +L +G ++ P D + P V
Sbjct: 130 EIRSATDQFDLAILGMGPD-----GHVASIFDLETGNKDNLVTFTDPSGDPKVPRVTLTF 184
Query: 712 ------------VRGKTALDKIGEAVKRNPF 730
+RGK ++++ E +K P
Sbjct: 185 RALNTSLYVLFLIRGKEKINRLTEILKDTPL 215
>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYL|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYM|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
pdb|2NYM|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
Length = 582
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 13/142 (9%)
Query: 677 GKKKMASALSELVSGASPIM---------IPLGPRRDHEE-PEVRVRGKTALDKIGEAVK 726
+ + SAL+ ++ G SPI+ +PL + +E PEVR+ + LD + E +
Sbjct: 330 ANQHVKSALASVIXGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG 389
Query: 727 RNPFSVILLEDIDEADMVVRGNIKRAMERGR--LVDSYGREISLGNVIFILTADWLPDSL 784
S LL I E + ++ A+ L G E + L WL D +
Sbjct: 390 IRQLSQSLLPAIVELAEDAKWRVRLAIIEYXPLLAGQLGVEF-FDEKLNSLCXAWLVDHV 448
Query: 785 KFLSQGITLDEKKLTSLASGEW 806
+ + T + KKL EW
Sbjct: 449 YAIREAATSNLKKLVEKFGKEW 470
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,453,822
Number of Sequences: 62578
Number of extensions: 1072701
Number of successful extensions: 2302
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2289
Number of HSP's gapped (non-prelim): 16
length of query: 1013
length of database: 14,973,337
effective HSP length: 108
effective length of query: 905
effective length of database: 8,214,913
effective search space: 7434496265
effective search space used: 7434496265
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)