BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001788
(1013 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O31673|CLPE_BACSU ATP-dependent Clp protease ATP-binding subunit ClpE OS=Bacillus
subtilis (strain 168) GN=clpE PE=1 SV=1
Length = 699
Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 83/166 (50%), Gaps = 14/166 (8%)
Query: 622 FKRLLKSLMEKVWWQQEAASAVATTVTQCKLG-NGKRRGAGSKGDMWLLFMGPDRVGKKK 680
K L L E+V Q+ A VA V + + G K R GS LF+GP VGK +
Sbjct: 400 MKELEAKLHERVIGQEAAVQKVAKAVRRSRAGLKSKNRPVGS-----FLFVGPTGVGKTE 454
Query: 681 MASALSELVSGASPIMIPLGPRRDHEEPEVR--------VRGKTALDKIGEAVKRNPFSV 732
++ L++ + G +I L E+ V G ++ E V+RNP+S+
Sbjct: 455 LSKTLADELFGTKDAIIRLDMSEYMEKHAVSKIIGSPPGYVGHEEAGQLTEKVRRNPYSI 514
Query: 733 ILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778
+LL++I++A V+ + ME GRL DS GR +S + + I+T++
Sbjct: 515 VLLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSN 560
>sp|O67588|CLPB_AQUAE Chaperone protein ClpB OS=Aquifex aeolicus (strain VF5) GN=clpB
PE=3 SV=1
Length = 1006
Score = 73.6 bits (179), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 89/174 (51%), Gaps = 17/174 (9%)
Query: 617 LDPDSFKRLLK---SLMEKVWWQQEAASAVATTVTQCKLG-NGKRRGAGSKGDMWLLFMG 672
L + ++LLK L ++V Q+ A AVA + + + G +R S LF+G
Sbjct: 672 LKEEEMQKLLKLEDELHKRVVDQEHAVKAVAEAIRRARAGLKDPKRPIAS-----FLFLG 726
Query: 673 PDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVR--------VRGKTALDKIGEA 724
P VGK +++ AL+EL+ G +I L EE V G K+ EA
Sbjct: 727 PTGVGKTELSKALAELLFGDEDALIRLDMSEFKEEHSVAKLIGAPPGYVGYEEGGKLTEA 786
Query: 725 VKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778
V+R P+SVILL++I++A V + ++ GRL DS+GR + N + I+T++
Sbjct: 787 VRRKPYSVILLDEIEKAHPRVLDLFLQVLDDGRLTDSHGRTVDFRNTVIIMTSN 840
>sp|Q54316|HLYB_TREHY Hemolysin B OS=Treponema hyodysenteriae GN=tlyB PE=3 SV=1
Length = 828
Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 103/197 (52%), Gaps = 18/197 (9%)
Query: 595 CISSEPPQNKLHESQNDQLQKPLDPDSFKRLL---KSLMEKVWWQQEAASAVATTVTQCK 651
I + ++ + E N +++ L+ +S KRL+ + L +KV Q+EA S+++ + + +
Sbjct: 479 FIEEDDIRHVISEITNIPIKRLLNSES-KRLIGMEEELHQKVVGQKEAISSISKAIRRSR 537
Query: 652 LG-NGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEV 710
G +R GS +F+GP VGK +A LSE + G S +I + E+ V
Sbjct: 538 AGLKTSKRPLGS-----FIFLGPTGVGKTALAKVLSEFMFGDSDALIRIDMSEFMEKFAV 592
Query: 711 -RVRG-------KTALDKIGEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSY 762
R+ G + E V+R P+S+IL ++I++A V + + +E G+L D++
Sbjct: 593 SRLIGAPPGYVGYEEGGGLTEKVRRKPYSLILFDEIEKAHPDVTNILLQVLEEGQLTDNF 652
Query: 763 GREISLGNVIFILTADW 779
GR++ N I I+T++
Sbjct: 653 GRKVDFSNTIIIITSNL 669
>sp|Q8YUL9|CLPB1_NOSS1 Chaperone protein ClpB 1 OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=clpB1 PE=3 SV=1
Length = 880
Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 95/187 (50%), Gaps = 23/187 (12%)
Query: 601 PQNKLHESQNDQLQKPLDPDSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLG-NGKRRG 659
P N+L ES+ QK L +S L ++V QQEA AV+ + + + G R
Sbjct: 556 PVNRLLESER---QKLLQLES------HLHQRVIGQQEAVEAVSAAIRRARAGMKDPNRP 606
Query: 660 AGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVR-------- 711
GS LFMGP VGK ++A AL++ + A ++ L E+ V
Sbjct: 607 IGS-----FLFMGPTGVGKTELARALAQFLFDADDALVRLDMSEYMEKHSVSRLVGAPPG 661
Query: 712 VRGKTALDKIGEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNV 771
G ++ EAV+R+P+SV+LL+++++A V + + ++ GR+ DS GR + N
Sbjct: 662 YVGYEEGGQLSEAVRRHPYSVVLLDEVEKAHPDVFNILLQVLDDGRITDSQGRTVDFRNT 721
Query: 772 IFILTAD 778
+ ++T++
Sbjct: 722 VIVMTSN 728
>sp|Q8EU05|CLPB_OCEIH Chaperone protein ClpB OS=Oceanobacillus iheyensis (strain DSM
14371 / JCM 11309 / KCTC 3954 / HTE831) GN=clpB PE=3
SV=1
Length = 809
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 92/182 (50%), Gaps = 19/182 (10%)
Query: 617 LDPDSFKRLL---KSLMEKVWWQQEAASAVATTVTQCKLG-NGKRRGAGSKGDMWLLFMG 672
L D RLL K L ++V Q EA +AVA + + + G +R GS +F+G
Sbjct: 494 LTKDETDRLLNMEKILHDRVIGQSEAVNAVAKAIRRARAGLKDPKRPIGS-----FIFLG 548
Query: 673 PDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVR------GKTALDKIG---E 723
P VGK ++A AL+E++ MI + ++ E R G D+ G E
Sbjct: 549 PTGVGKTELARALAEVMFADEDAMIRI-DMSEYMERHATSRLVGSPPGYVGYDEGGQLTE 607
Query: 724 AVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDS 783
V+R P+SV+LL+++++A V + + +E GRL DS GR + N + I+T++
Sbjct: 608 KVRRKPYSVVLLDEVEKAHPEVFNILLQVLEDGRLTDSKGRVVDFRNTVIIMTSNVGASE 667
Query: 784 LK 785
LK
Sbjct: 668 LK 669
>sp|P53533|CLPB1_SYNE7 Chaperone protein ClpB 1 OS=Synechococcus elongatus (strain PCC
7942) GN=clpB1 PE=2 SV=3
Length = 874
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 113/233 (48%), Gaps = 28/233 (12%)
Query: 555 ERAVSPLNSPVRTDLVLGRSKVLESAPEKTHIEPVKDFLGCISSEPPQNKLHESQNDQLQ 614
+R ++ + + T G+S + E E E + + G P +KL ES+ +Q
Sbjct: 512 QRKLNEMEGGLATTHTSGKSLLREEVTEVDIAEIISKWTGI-----PVSKLVESE---MQ 563
Query: 615 KPLDPDSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLG-NGKRRGAGSKGDMWLLFMGP 673
K L+ D + L ++V Q+EA SAVA + + + G + +R S +F+GP
Sbjct: 564 KLLNLD------EELHQRVIGQEEAVSAVADAIQRSRAGLSDPKRPIAS-----FIFLGP 612
Query: 674 DRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVR-----GKTALDKIG---EAV 725
VGK ++A AL+ + MI + E+ V G D+ G EAV
Sbjct: 613 TGVGKTELAKALAAYLFDTEDAMIRIDMSEYMEKHAVSRLIGAPPGYVGYDEGGQLTEAV 672
Query: 726 KRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778
+R P+SVIL ++I++A V + + ++ GR+ DS GR + N I ILT++
Sbjct: 673 RRRPYSVILFDEIEKAHPDVFNVMLQILDDGRVTDSRGRTVDFKNTILILTSN 725
>sp|P74459|CLPB1_SYNY3 Chaperone protein ClpB 1 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=clpB1 PE=3 SV=1
Length = 898
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 98/197 (49%), Gaps = 23/197 (11%)
Query: 601 PQNKLHESQNDQLQKPLDPDSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLG-NGKRRG 659
P N+L E++ +L + L L ++V Q+EA +AV+ + + + G R
Sbjct: 562 PMNRLMETERQKLLQ---------LEGHLHQRVIGQKEAVAAVSAAIRRARAGMKDPSRP 612
Query: 660 AGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVR-------- 711
GS LFMGP VGK ++A AL+ + + M+ + E+ V
Sbjct: 613 IGS-----FLFMGPTGVGKTELARALAGFLFDSEEAMVRIDMSEYMEKHAVSRLIGAPPG 667
Query: 712 VRGKTALDKIGEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNV 771
G ++ EAV+R P+SV+LL+++++A + V + + ++ GR+ DS GR + N
Sbjct: 668 YVGYEEGGQLSEAVRRRPYSVVLLDEVEKAHLDVFNILLQVLDDGRITDSQGRVVDFRNT 727
Query: 772 IFILTADWLPDSLKFLS 788
I ++T++ D + LS
Sbjct: 728 IIVMTSNIGSDHILSLS 744
>sp|Q88Q71|CLPB_PSEPK Chaperone protein ClpB OS=Pseudomonas putida (strain KT2440)
GN=clpB PE=3 SV=1
Length = 854
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 117/233 (50%), Gaps = 32/233 (13%)
Query: 555 ERAVSPLNSPVRTDLVLGRSKVLESAPEKTHIEPVKDFLGCISSEPPQNKLHESQNDQLQ 614
ER++ ++ +TD L R+KV E+ E V + G P K+ E + ++L
Sbjct: 510 ERSLQMVDQHGKTDNQLLRNKV----TEEEIAEVVSKWTGI-----PVAKMLEGEREKLL 560
Query: 615 KPLDPDSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLG-NGKRRGAGSKGDMWLLFMGP 673
K + + L ++V Q EA +AVA V + + G + R +GS LF+GP
Sbjct: 561 K---------MEELLHQRVIGQSEAVTAVANAVRRSRAGLSDPNRPSGS-----FLFLGP 606
Query: 674 DRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEV-RVRGK----TALDKIG---EAV 725
VGK ++ AL+E + M+ + E+ V R+ G ++ G EAV
Sbjct: 607 TGVGKTELCKALAEFLFDTEEAMVRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAV 666
Query: 726 KRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778
+R P+SV+LL+++++A V + + +E GRL DS+GR + N + ++T++
Sbjct: 667 RRKPYSVVLLDEVEKAHPDVFNVLLQVLEDGRLTDSHGRTVDFRNTVIVMTSN 719
>sp|Q831Y7|CLPB_ENTFA Chaperone protein ClpB OS=Enterococcus faecalis (strain ATCC 700802
/ V583) GN=clpB PE=3 SV=1
Length = 868
Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 26/201 (12%)
Query: 601 PQNKLHESQNDQLQKPLDPDSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLG-NGKRRG 659
P KL E + ++L K L ++L ++V Q EA AV+ V + + G R
Sbjct: 550 PVTKLVEGEREKLMK---------LNETLHKRVIGQDEAVDAVSDAVIRSRAGLQDPNRP 600
Query: 660 AGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVR-------- 711
GS LF+GP VGK ++A AL+E + + M+ + E+ V
Sbjct: 601 LGS-----FLFLGPTGVGKTELAKALAEDLFDSEDHMVRIDMSEYMEKHAVSRLVGAPPG 655
Query: 712 VRGKTALDKIGEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNV 771
G ++ EAV+RNP++++LL++I++A V + + ++ GRL DS GR + N
Sbjct: 656 YVGYEEGGQLTEAVRRNPYTIVLLDEIEKAHPDVFNILLQVLDDGRLTDSKGRVVDFKNT 715
Query: 772 IFILTADWLPDSLKFLSQGIT 792
+ I+T++ + L +G+T
Sbjct: 716 VLIMTSNI---GSQLLLEGVT 733
>sp|Q89UL2|CLPB_BRAJA Chaperone protein ClpB OS=Bradyrhizobium japonicum (strain USDA
110) GN=clpB PE=3 SV=1
Length = 879
Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 101/214 (47%), Gaps = 29/214 (13%)
Query: 575 KVLESAPEKTHI-EPVKDFLGCISSEPPQNKLHESQNDQLQKPLDPDSFKRLLKSLMEKV 633
+++E A HI + V + G P +K+ E + D+L K D SL ++V
Sbjct: 526 EMMEEAVTANHIAQVVSRWTGV-----PVDKMLEGEKDKLLKMED---------SLGKRV 571
Query: 634 WWQQEAASAVATTVTQCKLG-NGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGA 692
Q EA AVAT V + + G R GS +F+GP VGK ++ AL+E +
Sbjct: 572 VGQAEAVHAVATAVRRSRAGLQDPNRPMGS-----FMFLGPTGVGKTELTKALAEYLFND 626
Query: 693 SPIMIPLGPRRDHEEPEVRVR-----GKTALDKIG---EAVKRNPFSVILLEDIDEADMV 744
M+ L E+ V G D+ G EAV+R P+ V+L ++I++A
Sbjct: 627 ETAMVRLDMSEYMEKHSVSRLIGAPPGYVGYDEGGALTEAVRRRPYQVVLFDEIEKAHPD 686
Query: 745 VRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778
V + + ++ GRL D GR + N + I+T++
Sbjct: 687 VFNVLLQVLDDGRLTDGQGRTVDFRNTLIIMTSN 720
>sp|Q2QVG9|CLPC2_ORYSJ Chaperone protein ClpC2, chloroplastic OS=Oryza sativa subsp.
japonica GN=CLPC2 PE=2 SV=2
Length = 919
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 16/171 (9%)
Query: 618 DPDSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLG--NGKRRGAGSKGDMWLLFMGPDR 675
+ D ++ ++L ++V Q EA A++ ++ + ++G N R A +F GP
Sbjct: 590 ESDKLLKMEETLHQRVIGQDEAVKAISRSIRRARVGLKNPNRPIAS------FIFAGPTG 643
Query: 676 VGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVR--------VRGKTALDKIGEAVKR 727
VGK ++A AL+ G+ MI L E V G T ++ EAV+R
Sbjct: 644 VGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRR 703
Query: 728 NPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778
P++V+L ++I++A V + + +E GRL DS GR + N + I+T++
Sbjct: 704 RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 754
>sp|Q8EW28|CLPB_MYCPE Chaperone protein ClpB OS=Mycoplasma penetrans (strain HF-2)
GN=clpB PE=3 SV=1
Length = 705
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 100/207 (48%), Gaps = 31/207 (14%)
Query: 589 VKDFLGCIS--------SEPPQNKLHESQNDQLQKPLDPDSFKRLLKSLMEKVWWQQEAA 640
+KD++ I ++ P NK+ E + D+L L +L ++V Q EA
Sbjct: 381 IKDYISEIDVAEIISRITKIPLNKIFEKEQDKLL---------NLFNNLKKRVKGQDEAL 431
Query: 641 SAVATTVTQCKLG-NGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPL 699
V+ TV + ++G N R GS LF+GP VGK ++A +L+E + ++ +
Sbjct: 432 KLVSDTVLKNRVGINNPNRPIGS-----FLFVGPTGVGKTEVAKSLAENLFNTEKAIVRI 486
Query: 700 GPRRDHEEPEVR--------VRGKTALDKIGEAVKRNPFSVILLEDIDEADMVVRGNIKR 751
E+ + G ++ E ++R P+SV+LL++I++A + + +
Sbjct: 487 NMSEYMEKHSISRLIGAPPGYIGYEQAGELSEQIRRKPYSVVLLDEIEKAHPDILNVLLQ 546
Query: 752 AMERGRLVDSYGREISLGNVIFILTAD 778
++ G L D+ GR I+ N I I+T++
Sbjct: 547 VLDEGTLKDNQGRNINFKNTIIIMTSN 573
>sp|Q9CI09|CLPE_LACLA ATP-dependent Clp protease ATP-binding subunit ClpE OS=Lactococcus
lactis subsp. lactis (strain IL1403) GN=clpE PE=3 SV=1
Length = 748
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 14/163 (8%)
Query: 625 LLKSLMEKVWWQQEAASAVATTVTQCKLGNGK-RRGAGSKGDMWLLFMGPDRVGKKKMAS 683
L L V Q EA +A + + ++G GK R GS LF+GP VGK ++A
Sbjct: 438 LADDLKAHVIGQDEAVDKIAKAIRRSRVGLGKPNRPIGS-----FLFVGPTGVGKTELAK 492
Query: 684 ALSELVSGASPIMIPLGPRRDHEEPEVR--------VRGKTALDKIGEAVKRNPFSVILL 735
L++ + G+S MI E+ V G ++ E V+RNP+S+ILL
Sbjct: 493 QLAKELFGSSESMIRFDMSEYMEKHSVAKLIGAPPGYVGYEEAGQLTERVRRNPYSLILL 552
Query: 736 EDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778
++I++A V + +E GRL D+ GR +S + + I+T++
Sbjct: 553 DEIEKAHPDVMHMFLQILEDGRLTDAQGRTVSFKDSLIIMTSN 595
>sp|Q72AW6|CLPB_DESVH Chaperone protein ClpB OS=Desulfovibrio vulgaris (strain
Hildenborough / ATCC 29579 / NCIMB 8303) GN=clpB PE=3
SV=1
Length = 865
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 99/201 (49%), Gaps = 26/201 (12%)
Query: 601 PQNKLHESQNDQLQKPLDPDSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLG-NGKRRG 659
P +L ES+ ++L RL L E+V Q+EA AV+ V + + G + R
Sbjct: 552 PVTRLLESEREKLL---------RLADVLHERVVGQEEAVDAVSEAVLRARAGLSDPSRP 602
Query: 660 AGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVR------ 713
GS +F+GP VGK ++ L+E + ++ L ++ E R
Sbjct: 603 IGS-----FIFLGPTGVGKTELCKTLAEALFDTEENIVRLD-MSEYMEKHAVARLIGAPP 656
Query: 714 GKTALDKIG---EAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGN 770
G D+ G EAV+R P+SV+L +++++A V + + ++ GRL DS+GR + N
Sbjct: 657 GYVGYDEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNTLLQILDDGRLTDSHGRTVDFRN 716
Query: 771 VIFILTADW-LPDSLKFLSQG 790
I I+T++ P L +S+G
Sbjct: 717 TIIIMTSNIGSPYMLDGISEG 737
>sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic OS=Pisum sativum PE=2 SV=1
Length = 922
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 22/179 (12%)
Query: 616 PLD---PDSFKRLLK---SLMEKVWWQQEAASAVATTVTQCKLG--NGKRRGAGSKGDMW 667
P+D D RLLK +L +++ Q EA A++ + + ++G N R A
Sbjct: 585 PVDKVSADESDRLLKMEDTLHKRIIGQDEAVQAISRAIRRARVGLKNPNRPIAS------ 638
Query: 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVR--------VRGKTALD 719
+F GP VGK ++A AL+ G+ MI L E V G T
Sbjct: 639 FIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGG 698
Query: 720 KIGEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778
++ EAV+R P++V+L ++I++A V + + +E GRL DS GR + N + I+T++
Sbjct: 699 QLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 757
>sp|Q889C2|CLPB_PSESM Chaperone protein ClpB OS=Pseudomonas syringae pv. tomato (strain
DC3000) GN=clpB PE=3 SV=1
Length = 854
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 87/164 (53%), Gaps = 14/164 (8%)
Query: 624 RLLKSLMEKVWWQQEAASAVATTVTQCKLG-NGKRRGAGSKGDMWLLFMGPDRVGKKKMA 682
R+ L +V Q+EA AV+ V + + G + R +GS +F+GP VGK ++
Sbjct: 561 RMETLLHNRVIGQEEAVVAVSNAVRRSRAGLSDPNRPSGS-----FMFLGPTGVGKTELC 615
Query: 683 SALSELVSGASPIMIPLGPRRDHEEPEV-RVRGK----TALDKIG---EAVKRNPFSVIL 734
AL+E + M+ + E+ V R+ G ++ G EAV+R P+SVIL
Sbjct: 616 KALAEFLFDTEEAMVRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSVIL 675
Query: 735 LEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778
L+++++A V + + +E GRL DS+GR + N + ++T++
Sbjct: 676 LDEVEKAHSDVFNILLQVLEDGRLTDSHGRTVDFRNTVIVMTSN 719
>sp|Q9FI56|CLPC1_ARATH Chaperone protein ClpC1, chloroplastic OS=Arabidopsis thaliana
GN=CLPC1 PE=1 SV=1
Length = 929
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 85/172 (49%), Gaps = 19/172 (11%)
Query: 620 DSFKRLLK---SLMEKVWWQQEAASAVATTVTQCKLG--NGKRRGAGSKGDMWLLFMGPD 674
D RLLK +L +++ Q EA A++ + + ++G N R A +F GP
Sbjct: 594 DESDRLLKMEETLHKRIIGQDEAVKAISRAIRRARVGLKNPNRPIAS------FIFSGPT 647
Query: 675 RVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVR--------VRGKTALDKIGEAVK 726
VGK ++A AL+ G+ MI L E V G T ++ EAV+
Sbjct: 648 GVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVR 707
Query: 727 RNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778
R P++V+L ++I++A V + + +E GRL DS GR + N + I+T++
Sbjct: 708 RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 759
>sp|Q88VX7|CLPB_LACPL Chaperone protein ClpB OS=Lactobacillus plantarum (strain ATCC
BAA-793 / NCIMB 8826 / WCFS1) GN=clpB PE=3 SV=1
Length = 867
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 14/163 (8%)
Query: 625 LLKSLMEKVWWQQEAASAVATTVTQCKLG-NGKRRGAGSKGDMWLLFMGPDRVGKKKMAS 683
L L E+V Q A AV+ V + + G R GS +F+GP VGK ++A
Sbjct: 564 LADHLHERVVGQDAAVDAVSDAVLRSRAGLQDPNRPLGS-----FMFLGPTGVGKTELAK 618
Query: 684 ALSELVSGASPIMIPLGPRRDHEEPEVRVRGKTALDKIG--------EAVKRNPFSVILL 735
AL+E + A M+ + E+ V A +G EAV+RNP+S++L
Sbjct: 619 ALAENLFDADDHMVRIDMSEYMEKESVSRLVGAAPGYVGYEEGGQLTEAVRRNPYSIVLF 678
Query: 736 EDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778
++I++A V + + ++ GRL D GR + N I I+T++
Sbjct: 679 DEIEKAHPDVFNILLQVLDDGRLTDGQGRTVDFKNTILIMTSN 721
>sp|Q7N788|CLPB_PHOLL Chaperone protein ClpB OS=Photorhabdus luminescens subsp. laumondii
(strain TT01) GN=clpB PE=3 SV=1
Length = 857
Score = 67.4 bits (163), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 94/189 (49%), Gaps = 14/189 (7%)
Query: 618 DPDSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLGNGK-RRGAGSKGDMWLLFMGPDRV 676
+ D R+ + L ++V Q EA +A++ + + + G R GS LF+GP V
Sbjct: 555 EKDKLLRMEQELHKRVIGQDEAVNAISNAIRRSRAGLADPNRPIGS-----FLFLGPTGV 609
Query: 677 GKKKMASALSELVSGASPIMIPLGPRRDHEEPEV-RVRGK----TALDKIG---EAVKRN 728
GK ++ AL+ + + M+ + E+ V R+ G ++ G EAV+R
Sbjct: 610 GKTELCKALANFLFDSDDAMVRIDMSEFMEKHAVSRLVGAPPGYVGYEEGGYLTEAVRRR 669
Query: 729 PFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLKFLS 788
P+SVILL+++++A V + + ++ GRL D GR + N + I+T++ D ++
Sbjct: 670 PYSVILLDEVEKAHSDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDMIQERF 729
Query: 789 QGITLDEKK 797
+ DE K
Sbjct: 730 GSLNYDEMK 738
>sp|P31542|CLPAB_SOLLC ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,
chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1
Length = 923
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 19/172 (11%)
Query: 620 DSFKRLLK---SLMEKVWWQQEAASAVATTVTQCKLG--NGKRRGAGSKGDMWLLFMGPD 674
D RLLK +L ++ Q EA A++ + + ++G N R A +F GP
Sbjct: 592 DESDRLLKMEETLHTRIIGQDEAVKAISRAIRRARVGLKNPNRPIAS------FIFSGPT 645
Query: 675 RVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVR--------VRGKTALDKIGEAVK 726
VGK ++A AL+ G+ MI L E V G T ++ EAV+
Sbjct: 646 GVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVR 705
Query: 727 RNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778
R P++V+L ++I++A V + + +E GRL DS GR + N + I+T++
Sbjct: 706 RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 757
>sp|Q9CFF3|CLPB_LACLA Chaperone protein ClpB OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=clpB PE=3 SV=1
Length = 867
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 104/214 (48%), Gaps = 28/214 (13%)
Query: 574 SKVLESAPEKTHIEPVKDFLGCISSEPPQNKLHESQNDQLQKPLDPDSFKRLLKSLMEKV 633
S V ES E+ E V G P KL E + ++L L ++L ++V
Sbjct: 528 SLVQESVTEEQITEVVGRMTGI-----PITKLVEGEREKLL---------HLPETLHQRV 573
Query: 634 WWQQEAASAVATTVTQCKLG-NGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGA 692
Q EA AV+ + + + G R GS LF+GP VGK ++A AL+E + +
Sbjct: 574 VGQDEAVEAVSDAIIRARAGIQDPNRPLGS-----FLFLGPTGVGKTELAKALAENLFDS 628
Query: 693 SPIMIPLGPRRDHEEPEV-RVRGK----TALDKIG---EAVKRNPFSVILLEDIDEADMV 744
M+ + E+ V R+ G D+ G EAV+RNP+++ILL++I++A
Sbjct: 629 EEHMVRIDMSEYMEKHSVSRLVGAPPGYVGYDEGGQLTEAVRRNPYTIILLDEIEKAHPD 688
Query: 745 VRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778
V + + ++ GRL DS G + N + I+T++
Sbjct: 689 VFNILLQVLDDGRLTDSKGVLVDFKNTVLIMTSN 722
>sp|Q9S5Z2|CLPE_LACLM ATP-dependent Clp protease ATP-binding subunit ClpE OS=Lactococcus
lactis subsp. cremoris (strain MG1363) GN=clpE PE=1 SV=2
Length = 748
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 14/163 (8%)
Query: 625 LLKSLMEKVWWQQEAASAVATTVTQCKLGNGK-RRGAGSKGDMWLLFMGPDRVGKKKMAS 683
L L V Q EA ++ + + ++G GK R GS LF+GP VGK ++A
Sbjct: 438 LADDLKAHVIGQDEAVDKISKAIRRSRVGLGKPNRPIGS-----FLFVGPTGVGKTELAK 492
Query: 684 ALSELVSGASPIMIPLGPRRDHEEPEVR--------VRGKTALDKIGEAVKRNPFSVILL 735
L++ + G+S MI E+ V G ++ E V+RNP+S+ILL
Sbjct: 493 QLAKELFGSSESMIRFDMSEYMEKHSVAKLIGAPPGYVGYEEAGQLTERVRRNPYSLILL 552
Query: 736 EDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778
++I++A V + +E GRL D+ GR +S + + I+T++
Sbjct: 553 DEIEKAHPDVMHMFLQILEDGRLTDAQGRTVSFKDSLIIMTSN 595
>sp|Q4L3I4|CLPC_STAHJ ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus haemolyticus (strain JCSC1435) GN=clpC
PE=3 SV=1
Length = 824
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 95/187 (50%), Gaps = 23/187 (12%)
Query: 601 PQNKLHESQNDQLQKPLDPDSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLG-NGKRRG 659
P K++E+++D+L L ++L ++V Q +A ++++ V + + G +R
Sbjct: 487 PLTKINETESDRLLN---------LEQTLHDRVIGQNDAVTSISKAVRRARAGLKDPKRP 537
Query: 660 AGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVR-------- 711
GS +F+GP VGK ++A AL+E + G MI + E+ V
Sbjct: 538 IGS-----FIFLGPTGVGKTELARALAESMFGEEDAMIRVDMSEFMEKHAVSRLVGAPPG 592
Query: 712 VRGKTALDKIGEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNV 771
G ++ E V+R P+SVIL ++I++A V + + ++ G L D+ GR++ N
Sbjct: 593 YVGHDEGGQLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRQVDFRNT 652
Query: 772 IFILTAD 778
+ I+T++
Sbjct: 653 VIIMTSN 659
>sp|O68185|CLPB_LACLM Chaperone protein ClpB OS=Lactococcus lactis subsp. cremoris
(strain MG1363) GN=clpB PE=2 SV=3
Length = 867
Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 104/214 (48%), Gaps = 28/214 (13%)
Query: 574 SKVLESAPEKTHIEPVKDFLGCISSEPPQNKLHESQNDQLQKPLDPDSFKRLLKSLMEKV 633
S V ES E+ E V G P KL E + ++L L ++L ++V
Sbjct: 528 SLVQESVTEEQIAEVVGRMTGI-----PITKLVEGEREKLL---------HLPETLHQRV 573
Query: 634 WWQQEAASAVATTVTQCKLG-NGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGA 692
Q EA AV+ + + + G R GS LF+GP VGK ++A AL+E + +
Sbjct: 574 VGQDEAVEAVSDAIIRARAGIQDPNRPLGS-----FLFLGPTGVGKTELAKALAENLFDS 628
Query: 693 SPIMIPLGPRRDHEEPEV-RVRGK----TALDKIG---EAVKRNPFSVILLEDIDEADMV 744
M+ + E+ V R+ G D+ G EAV+RNP+++ILL++I++A
Sbjct: 629 EEHMVRIDMSEYMEKHSVSRLVGAPPGYVGYDEGGQLTEAVRRNPYTIILLDEIEKAHPD 688
Query: 745 VRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778
V + + ++ GRL DS G + N + I+T++
Sbjct: 689 VFNILLQVLDDGRLTDSKGVLVDFKNTVLIMTSN 722
>sp|Q8P6A0|CLPB_XANCP Chaperone protein ClpB OS=Xanthomonas campestris pv. campestris
(strain ATCC 33913 / NCPPB 528 / LMG 568) GN=clpB PE=3
SV=1
Length = 861
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 97/197 (49%), Gaps = 23/197 (11%)
Query: 601 PQNKLHESQNDQLQKPLDPDSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLG-NGKRRG 659
P NK+ E + D+L R+ L +V Q+EA V+ V + + G + R
Sbjct: 547 PVNKMLEGERDKLL---------RMEDELHRRVVGQEEAIKVVSDAVRRSRAGLSDPNRP 597
Query: 660 AGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVR-----G 714
+GS LF+GP VGK ++ AL++ + ++ MI + E+ V G
Sbjct: 598 SGS-----FLFLGPTGVGKTELCKALADFLFDSTEAMIRIDMSEFMEKHSVSRLIGAPPG 652
Query: 715 KTALDKIG---EAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNV 771
++ G EAV+R P+S+ILL+++++A V + + ++ GRL D GR + N
Sbjct: 653 YVGYEEGGYLTEAVRRRPYSLILLDEVEKAHADVFNILLQVLDDGRLTDGQGRTVDFRNT 712
Query: 772 IFILTADWLPDSLKFLS 788
+ ++T++ ++ LS
Sbjct: 713 VIVMTSNLGSHQIQELS 729
>sp|Q7VBL0|CLPB_PROMA Chaperone protein ClpB OS=Prochlorococcus marinus (strain SARG /
CCMP1375 / SS120) GN=clpB PE=3 SV=1
Length = 864
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 87/165 (52%), Gaps = 14/165 (8%)
Query: 629 LMEKVWWQQEAASAVATTVTQCKLG-NGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSE 687
L KV Q++A AVA ++ + + G + R GS L +GP VGK +++ +L++
Sbjct: 573 LNSKVIGQKQAVQAVADSIQRSRTGLSDPSRPMGS-----FLLLGPTGVGKTELSKSLAK 627
Query: 688 LVSGASPIMIPLGPRRDHEEPEVR--------VRGKTALDKIGEAVKRNPFSVILLEDID 739
+ + MI + E+ + G + ++ EAV+RNP+SVIL ++++
Sbjct: 628 ELFDSEKAMIRIDMSEYMEKHSISRLIGAPPGYVGYESGGQLSEAVRRNPYSVILFDEVE 687
Query: 740 EADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSL 784
+A+ V + + ++ GRL D G+ I+ N I ILT++ +S+
Sbjct: 688 KANSDVLNIMLQILDEGRLTDGKGKNINFKNTIIILTSNVGSESI 732
>sp|Q7F9I1|CLPC1_ORYSJ Chaperone protein ClpC1, chloroplastic OS=Oryza sativa subsp.
japonica GN=CLPC1 PE=2 SV=2
Length = 918
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 19/172 (11%)
Query: 620 DSFKRLLK---SLMEKVWWQQEAASAVATTVTQCKLG--NGKRRGAGSKGDMWLLFMGPD 674
D RLLK +L ++ Q EA A++ + + ++G N R A +F GP
Sbjct: 588 DESDRLLKMEETLHTRIIGQDEAVKAISRAIRRARVGLKNPNRPIAS------FIFSGPT 641
Query: 675 RVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVR--------VRGKTALDKIGEAVK 726
VGK ++A AL+ G+ MI L E V G T ++ EAV+
Sbjct: 642 GVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVR 701
Query: 727 RNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778
R P++V+L ++I++A V + + +E GRL DS GR + N + I+T++
Sbjct: 702 RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 753
>sp|Q8KG79|CLPB1_CHLTE Probable chaperone protein ClpB 1 OS=Chlorobium tepidum (strain
ATCC 49652 / DSM 12025 / TLS) GN=clpB1 PE=3 SV=1
Length = 438
Score = 66.6 bits (161), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 81/159 (50%), Gaps = 14/159 (8%)
Query: 629 LMEKVWWQQEAASAVATTVTQCKLGNG-KRRGAGSKGDMWLLFMGPDRVGKKKMASALSE 687
L +V Q EA AV+ V + + G G ++R GS +F+GP VGK ++A L+E
Sbjct: 139 LHRRVVGQDEAVRAVSDAVKRSRAGMGDEKRPIGS-----FIFLGPTGVGKTELARTLAE 193
Query: 688 LVSGASPIMIPLGPRRDHEEPEVR--------VRGKTALDKIGEAVKRNPFSVILLEDID 739
+ +I + E V G ++ EAV+R PFSV+LL++I+
Sbjct: 194 YLFDDEDALIRIDMSEYMEAHTVSRLVGAPPGYVGYEEGGQLTEAVRRKPFSVVLLDEIE 253
Query: 740 EADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778
+A V + + ++ GRL DS GR ++ N I I+T++
Sbjct: 254 KAHPDVFNILLQILDDGRLTDSKGRTVNFKNTIIIMTSN 292
Score = 33.9 bits (76), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 14/68 (20%)
Query: 890 DLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGDA----LSIEILDEALEKLVGGV 945
+ LN +D I+F P+ R ++ +T +F+ I A +++EI DEAL +
Sbjct: 332 EFLNRIDEVILFTPL----TRENLREIVTIQFNRIKETARRQRITLEISDEAL------M 381
Query: 946 WLGRTGLE 953
WL +TG +
Sbjct: 382 WLAKTGFD 389
>sp|Q8G4X4|CLPB_BIFLO Chaperone protein ClpB OS=Bifidobacterium longum (strain NCC 2705)
GN=clpB PE=3 SV=1
Length = 889
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 97/201 (48%), Gaps = 28/201 (13%)
Query: 587 EPVKDFLGCISSEPPQNKLHESQNDQLQKPLDPDSFKRLLKSLMEKVWWQQEAASAVATT 646
E V D+ G P +L + +N++L D L ++V Q+EA +AV+
Sbjct: 549 EIVSDWTGI-----PVGRLMQGENEKLLHMED---------YLGKRVIGQKEAIAAVSDA 594
Query: 647 VTQCKLG-NGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDH 705
V + + G + R GS LF+GP VGK ++A AL++ + M+ +
Sbjct: 595 VRRSRAGISDPNRPTGS-----FLFLGPTGVGKTELAKALADFLFDDEKAMVRIDMSEYM 649
Query: 706 EEPEVRVRGKTALDKIG--------EAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGR 757
E+ V A +G EAV+R P+SV+L +++++A+ + + + ++ GR
Sbjct: 650 EKASVSRLIGAAPGYVGYEQGGQLTEAVRRRPYSVVLFDEVEKANPEIFDVLLQVLDDGR 709
Query: 758 LVDSYGREISLGNVIFILTAD 778
L D GR + N I I+T++
Sbjct: 710 LTDGQGRTVDFKNTILIMTSN 730
>sp|Q89YY3|CLPB_BACTN Chaperone protein ClpB OS=Bacteroides thetaiotaomicron (strain ATCC
29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=clpB
PE=3 SV=1
Length = 862
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 94/188 (50%), Gaps = 23/188 (12%)
Query: 601 PQNKLHESQNDQLQKPLDPDSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLG-NGKRRG 659
P +K+ +S+ D+L L L ++V Q EA AVA V + + G +R
Sbjct: 545 PVSKMMQSEKDKLL---------HLEDELHQRVIGQDEAIEAVADAVRRSRAGLQDPKRP 595
Query: 660 AGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEV-RVRGK--- 715
GS +F+G VGK ++A AL+E + +M + E+ V R+ G
Sbjct: 596 IGS-----FIFLGTTGVGKTELAKALAEFLFDDESMMTRIDMSEYQEKHSVSRLVGAPPG 650
Query: 716 -TALDKIG---EAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNV 771
D+ G EA++R P+SV+L ++I++A V + + ++ GRL D+ GR ++ N
Sbjct: 651 YVGYDEGGQLTEAIRRKPYSVVLFDEIEKAHPDVFNILLQVLDDGRLTDNKGRVVNFKNT 710
Query: 772 IFILTADW 779
I I+T++
Sbjct: 711 IIIMTSNM 718
>sp|P31541|CLPAA_SOLLC ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A,
chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1
Length = 926
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 19/172 (11%)
Query: 620 DSFKRLLK---SLMEKVWWQQEAASAVATTVTQCKLG--NGKRRGAGSKGDMWLLFMGPD 674
D RLLK +L +V Q EA A++ + + ++G N R A +F GP
Sbjct: 595 DESDRLLKMEETLHTRVIGQDEAVKAISRAIRRARVGLKNPNRPIAS------FIFSGPT 648
Query: 675 RVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVR--------VRGKTALDKIGEAVK 726
VGK ++A +L+ G+ MI L E V G T ++ EAV+
Sbjct: 649 GVGKSELAKSLATYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVR 708
Query: 727 RNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778
R P++V+L ++I++A V + + +E GRL DS GR + N + I+T++
Sbjct: 709 RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 760
>sp|Q8NXY8|CLPC_STAAW ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain MW2) GN=clpC PE=3 SV=1
Length = 818
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 94/187 (50%), Gaps = 23/187 (12%)
Query: 601 PQNKLHESQNDQLQKPLDPDSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLG-NGKRRG 659
P K++E+++++L D +L E+V Q++A ++++ V + + G +R
Sbjct: 487 PLTKINETESEKLLSLED---------TLHERVIGQKDAVNSISKAVRRARAGLKDPKRP 537
Query: 660 AGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGKTALD 719
GS +F+GP VGK ++A AL+E + G MI + E+ V L
Sbjct: 538 IGS-----FIFLGPTGVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPLG 592
Query: 720 KIG--------EAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNV 771
+G E V+R P+SVIL ++I++A V + + ++ G L D+ GR + N
Sbjct: 593 YVGHDDGGQLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNT 652
Query: 772 IFILTAD 778
I I+T++
Sbjct: 653 IIIMTSN 659
>sp|P24428|CLPC_MYCLE Probable ATP-dependent Clp protease ATP-binding subunit
OS=Mycobacterium leprae (strain TN) GN=clpC PE=3 SV=2
Length = 848
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 83/165 (50%), Gaps = 16/165 (9%)
Query: 624 RLLKSLMEKVWWQQEAASAVATTVTQCKLG-NGKRRGAGSKGDMWLLFMGPDRVGKKKMA 682
R+ + L +++ Q++A AV+ + + + G +R +GS +F GP VGK +++
Sbjct: 509 RMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGS-----FIFAGPSGVGKTELS 563
Query: 683 SALSELVSGASPIMIPLGPRRDHEE---------PEVRVRGKTALDKIGEAVKRNPFSVI 733
AL+ + G +I + H+ P V G ++ E V+R PFSV+
Sbjct: 564 KALANFLFGDDDALIQIDMGEFHDRFTASRLFGAPPGYV-GYEEGGQLTEKVRRKPFSVV 622
Query: 734 LLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778
L ++I++A + ++ + +E GRL D GR + N + I T++
Sbjct: 623 LFDEIEKAHQEIYNSLLQVLEDGRLTDGQGRTVDFKNTVLIFTSN 667
>sp|Q81TT4|CLPB_BACAN Chaperone protein ClpB OS=Bacillus anthracis GN=clpB PE=3 SV=1
Length = 866
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 84/164 (51%), Gaps = 14/164 (8%)
Query: 624 RLLKSLMEKVWWQQEAASAVATTVTQCKLG-NGKRRGAGSKGDMWLLFMGPDRVGKKKMA 682
RL + L E+V Q+EA S V+ V + + G R GS +F+GP VGK ++A
Sbjct: 567 RLEQILSERVIGQEEAVSLVSDAVLRARAGIKDPNRPIGS-----FIFLGPTGVGKTELA 621
Query: 683 SALSELVSGASPIMIPLGPRRDHEEPEVR--------VRGKTALDKIGEAVKRNPFSVIL 734
L++ + + MI + E+ V G ++ EAV+R P+SVIL
Sbjct: 622 KTLAQSLFDSEEQMIRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVIL 681
Query: 735 LEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778
L++I++A V + + ++ GR+ DS GR + N + I+T++
Sbjct: 682 LDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVIIMTSN 725
>sp|Q73BY1|CLPB_BACC1 Chaperone protein ClpB OS=Bacillus cereus (strain ATCC 10987)
GN=clpB PE=3 SV=1
Length = 866
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 84/164 (51%), Gaps = 14/164 (8%)
Query: 624 RLLKSLMEKVWWQQEAASAVATTVTQCKLG-NGKRRGAGSKGDMWLLFMGPDRVGKKKMA 682
RL + L E+V Q+EA S V+ V + + G R GS +F+GP VGK ++A
Sbjct: 567 RLEQILSERVIGQEEAVSLVSDAVLRARAGIKDPNRPIGS-----FIFLGPTGVGKTELA 621
Query: 683 SALSELVSGASPIMIPLGPRRDHEEPEVR--------VRGKTALDKIGEAVKRNPFSVIL 734
L++ + + MI + E+ V G ++ EAV+R P+SVIL
Sbjct: 622 KTLAQSLFDSEEQMIRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVIL 681
Query: 735 LEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778
L++I++A V + + ++ GR+ DS GR + N + I+T++
Sbjct: 682 LDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVIIMTSN 725
>sp|Q9RVI3|CLPB_DEIRA Chaperone protein ClpB OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=clpB PE=3 SV=2
Length = 852
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 106/217 (48%), Gaps = 29/217 (13%)
Query: 575 KVLESAPEKTHIEPVKDFLGCISSE---PPQNKLHESQNDQLQKPLDPDSFKRLLKSLME 631
K L+SA E H+E ++ + + S P +KL E + ++L L + L
Sbjct: 509 KKLKSA-EFAHMEVTEEDIAAVVSRWTGIPVSKLMEGEREKLLH---------LEEQLHG 558
Query: 632 KVWWQQEAASAVATTVTQCKLG-NGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVS 690
+V Q A +V+ + + + G N R GS +F+GP VGK ++A AL+E +
Sbjct: 559 RVIGQDRAIVSVSDAIRRARAGLNDPNRPLGS-----FMFLGPSGVGKTELAKALAEFLF 613
Query: 691 GASPIMIPLGPRRDHEEPEVRVR------GKTALDKIG---EAVKRNPFSVILLEDIDEA 741
+S M+ + ++ E R G ++ G EAV+R P++VIL ++I++A
Sbjct: 614 DSSDAMVRI-DMSEYMEKHTVARLIGAPPGYVGFEEGGQLTEAVRRRPYAVILFDEIEKA 672
Query: 742 DMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778
V + + ++ GRL D GR + N + I+T++
Sbjct: 673 HPDVFNVLLQVLDDGRLTDGQGRTVDFRNTLIIMTSN 709
>sp|P0A522|CLPC_MYCTU Probable ATP-dependent Clp protease ATP-binding subunit
OS=Mycobacterium tuberculosis GN=clpC PE=1 SV=1
Length = 848
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 83/165 (50%), Gaps = 16/165 (9%)
Query: 624 RLLKSLMEKVWWQQEAASAVATTVTQCKLG-NGKRRGAGSKGDMWLLFMGPDRVGKKKMA 682
R+ + L +++ Q++A AV+ + + + G +R +GS +F GP VGK +++
Sbjct: 509 RMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGS-----FIFAGPSGVGKTELS 563
Query: 683 SALSELVSGASPIMIPLGPRRDHEE---------PEVRVRGKTALDKIGEAVKRNPFSVI 733
AL+ + G +I + H+ P V G ++ E V+R PFSV+
Sbjct: 564 KALANFLFGDDDALIQIDMGEFHDRFTASRLFGAPPGYV-GYEEGGQLTEKVRRKPFSVV 622
Query: 734 LLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778
L ++I++A + ++ + +E GRL D GR + N + I T++
Sbjct: 623 LFDEIEKAHQEIYNSLLQVLEDGRLTDGQGRTVDFKNTVLIFTSN 667
>sp|P0A523|CLPC_MYCBO Probable ATP-dependent Clp protease ATP-binding subunit
OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
GN=clpC PE=3 SV=1
Length = 848
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 83/165 (50%), Gaps = 16/165 (9%)
Query: 624 RLLKSLMEKVWWQQEAASAVATTVTQCKLG-NGKRRGAGSKGDMWLLFMGPDRVGKKKMA 682
R+ + L +++ Q++A AV+ + + + G +R +GS +F GP VGK +++
Sbjct: 509 RMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGS-----FIFAGPSGVGKTELS 563
Query: 683 SALSELVSGASPIMIPLGPRRDHEE---------PEVRVRGKTALDKIGEAVKRNPFSVI 733
AL+ + G +I + H+ P V G ++ E V+R PFSV+
Sbjct: 564 KALANFLFGDDDALIQIDMGEFHDRFTASRLFGAPPGYV-GYEEGGQLTEKVRRKPFSVV 622
Query: 734 LLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778
L ++I++A + ++ + +E GRL D GR + N + I T++
Sbjct: 623 LFDEIEKAHQEIYNSLLQVLEDGRLTDGQGRTVDFKNTVLIFTSN 667
>sp|Q9HVN5|CLPB_PSEAE Chaperone protein ClpB OS=Pseudomonas aeruginosa (strain ATCC 15692
/ PAO1 / 1C / PRS 101 / LMG 12228) GN=clpB PE=3 SV=1
Length = 854
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 16/166 (9%)
Query: 624 RLLKSLMEKVWWQQEAASAVATTVTQCKLGNGK-RRGAGSKGDMWLLFMGPDRVGKKKMA 682
R+ + L +V Q EA AV+ V + + G R +GS LF+GP VGK ++
Sbjct: 561 RMEQELHRRVIGQDEAVVAVSNAVRRSRAGLADPNRPSGS-----FLFLGPTGVGKTELC 615
Query: 683 SALSELVSGASPIMIPLGPRRDHEEPEVRVR------GKTALDKIG---EAVKRNPFSVI 733
AL+E + ++ + E+ V R G ++ G EA++R P+SV+
Sbjct: 616 KALAEFLFDTEEALVRIDMSEFMEKHSV-ARLIGAPPGYVGFEEGGYLTEAIRRKPYSVV 674
Query: 734 LLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADW 779
LL+++++A V + + +E GRL DS+GR + N + ++T++
Sbjct: 675 LLDEVEKAHPDVFNILLQVLEDGRLTDSHGRTVDFRNTVVVMTSNL 720
>sp|Q71XF9|CLPB_LISMF Chaperone protein ClpB OS=Listeria monocytogenes serotype 4b
(strain F2365) GN=clpB PE=3 SV=1
Length = 866
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 23/187 (12%)
Query: 601 PQNKLHESQNDQLQKPLDPDSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLG-NGKRRG 659
P KL E + ++L K D L +KV Q +A V+ V + + G +R
Sbjct: 553 PVTKLVEGEREKLLKLAD---------ELHQKVIGQDDAVQLVSDAVLRARAGIKDPKRP 603
Query: 660 AGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVR-------- 711
GS +F+GP VGK ++A AL+ + + MI + E+ V
Sbjct: 604 IGS-----FIFLGPTGVGKTELAKALAFNMFDSEDHMIRIDMSEYMEKHSVSRLVGAPPG 658
Query: 712 VRGKTALDKIGEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNV 771
G ++ EAV+RNP+S++LL++I++A V + + ++ GR+ DS GR I N
Sbjct: 659 YVGYEEGGQLTEAVRRNPYSIVLLDEIEKAHPDVFNILLQVLDDGRITDSQGRLIDFKNT 718
Query: 772 IFILTAD 778
+ I+T++
Sbjct: 719 VIIMTSN 725
>sp|Q929G7|CLPB_LISIN Chaperone protein ClpB OS=Listeria innocua serovar 6a (strain CLIP
11262) GN=clpB PE=3 SV=1
Length = 866
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 23/187 (12%)
Query: 601 PQNKLHESQNDQLQKPLDPDSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLG-NGKRRG 659
P KL E + ++L K D L +KV Q +A V+ V + + G +R
Sbjct: 553 PVTKLVEGEREKLLKLAD---------VLHQKVIGQDDAVQLVSDAVLRARAGIKDPKRP 603
Query: 660 AGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVR-------- 711
GS +F+GP VGK ++A AL+ + + MI + E+ V
Sbjct: 604 IGS-----FIFLGPTGVGKTELAKALAYNMFDSEDHMIRIDMSEYMEKHSVSRLVGAPPG 658
Query: 712 VRGKTALDKIGEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNV 771
G ++ EAV+RNP+S++LL++I++A V + + ++ GR+ DS GR I N
Sbjct: 659 YVGYEEGGQLTEAVRRNPYSIVLLDEIEKAHPDVFNILLQVLDDGRITDSQGRLIDFKNT 718
Query: 772 IFILTAD 778
+ I+T++
Sbjct: 719 VIIMTSN 725
>sp|Q6LMY0|CLPB_PHOPR Chaperone protein ClpB OS=Photobacterium profundum GN=clpB PE=3
SV=2
Length = 857
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 14/175 (8%)
Query: 620 DSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLG-NGKRRGAGSKGDMWLLFMGPDRVGK 678
D R+ L ++V Q EA AVA + + + G + R GS LF+GP VGK
Sbjct: 557 DKLLRMEDELHQRVIGQNEAVEAVANAIRRSRAGLSDPNRPIGS-----FLFLGPTGVGK 611
Query: 679 KKMASALSELVSGASPIMIPLGPRRDHEEPEV-RVRGK----TALDKIG---EAVKRNPF 730
++ L+ + + M+ + E+ V R+ G ++ G EAV+R P+
Sbjct: 612 TELCKTLANFMFDSEDNMVRIDMSEFMEKHSVARLVGAPPGYVGYEEGGYLTEAVRRRPY 671
Query: 731 SVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLK 785
SVILL+++++A V + + ++ GRL D GR + N + I+T++ D ++
Sbjct: 672 SVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSDRIQ 726
>sp|P44403|CLPB_HAEIN Chaperone protein ClpB OS=Haemophilus influenzae (strain ATCC 51907
/ DSM 11121 / KW20 / Rd) GN=clpB PE=3 SV=1
Length = 856
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 97/194 (50%), Gaps = 23/194 (11%)
Query: 601 PQNKLHESQNDQLQKPLDPDSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLG-NGKRRG 659
P +K+ E + ++L R+ L ++V Q+EA AVA + + + G + R
Sbjct: 547 PVSKMMEGEKEKLL---------RMEDELHKRVIGQEEAVDAVANAIRRSRAGLSDPNRP 597
Query: 660 AGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEV-RVRGK--- 715
GS LF+GP VGK ++ L++ + + M+ + E+ V R+ G
Sbjct: 598 IGS-----FLFLGPTGVGKTELCKTLAKFLFDSEDAMVRIDMSEFMEKHSVSRLVGAPPG 652
Query: 716 -TALDKIG---EAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNV 771
++ G EAV+R P+SVILL+++++A V + + ++ GRL D GR + N
Sbjct: 653 YVGYEEGGYLTEAVRRRPYSVILLDEVEKAHADVFNILLQVLDDGRLTDGQGRTVDFRNT 712
Query: 772 IFILTADWLPDSLK 785
+ I+T++ D ++
Sbjct: 713 VVIMTSNLGSDLIQ 726
>sp|Q81GM5|CLPB_BACCR Chaperone protein ClpB OS=Bacillus cereus (strain ATCC 14579 / DSM
31) GN=clpB PE=3 SV=1
Length = 866
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 84/164 (51%), Gaps = 14/164 (8%)
Query: 624 RLLKSLMEKVWWQQEAASAVATTVTQCKLG-NGKRRGAGSKGDMWLLFMGPDRVGKKKMA 682
RL + L E+V Q+EA S V+ V + + G R GS +F+GP VGK ++A
Sbjct: 567 RLEQILSERVIGQEEAVSLVSDAVLRARAGIKDPNRPIGS-----FIFLGPTGVGKTELA 621
Query: 683 SALSELVSGASPIMIPLGPRRDHEEPEVR--------VRGKTALDKIGEAVKRNPFSVIL 734
L++ + + MI + E+ V G ++ EAV+R P+SV+L
Sbjct: 622 KTLAQSLFDSEEQMIRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVVL 681
Query: 735 LEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778
L++I++A V + + ++ GR+ DS GR + N + I+T++
Sbjct: 682 LDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVIIMTSN 725
>sp|Q49V34|CLPC_STAS1 ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus saprophyticus subsp. saprophyticus
(strain ATCC 15305 / DSM 20229) GN=clpC PE=3 SV=1
Length = 820
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 93/187 (49%), Gaps = 23/187 (12%)
Query: 601 PQNKLHESQNDQLQKPLDPDSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLG-NGKRRG 659
P K++E+++D+L D +L +V Q++A ++++ V + + G +R
Sbjct: 487 PLTKINETESDRLLNLED---------TLHNRVIGQKDAVTSISKAVRRARAGLKDPKRP 537
Query: 660 AGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVR-------- 711
GS +F+GP VGK ++A AL+E + G MI + E+ V
Sbjct: 538 IGS-----FIFLGPTGVGKTELARALAESMFGEDDAMIRVDMSEFMEKHAVSRLVGAPPG 592
Query: 712 VRGKTALDKIGEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNV 771
G ++ E V+R P+SVIL ++I++A V + + ++ G L D+ GR + N
Sbjct: 593 YVGHDDGGQLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRRVDFRNT 652
Query: 772 IFILTAD 778
+ I+T++
Sbjct: 653 VIIMTSN 659
>sp|Q2YSD6|CLPC_STAAB ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain bovine RF122 / ET3-1)
GN=clpC PE=3 SV=1
Length = 818
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 94/187 (50%), Gaps = 23/187 (12%)
Query: 601 PQNKLHESQNDQLQKPLDPDSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLG-NGKRRG 659
P K++E+++++L D +L E+V Q++A ++++ V + + G +R
Sbjct: 487 PLTKINETESEKLLSLED---------TLHERVIGQKDAVNSISKAVRRARAGLKDPKRP 537
Query: 660 AGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVR-------- 711
GS +F+GP VGK ++A AL+E + G MI + E+ V
Sbjct: 538 IGS-----FIFLGPTGVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPG 592
Query: 712 VRGKTALDKIGEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNV 771
G ++ E V+R P+SVIL ++I++A V + + ++ G L D+ GR + N
Sbjct: 593 YVGHDDGGQLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNT 652
Query: 772 IFILTAD 778
I I+T++
Sbjct: 653 IIIMTSN 659
>sp|Q74X11|CLPB_YERPE Chaperone protein ClpB OS=Yersinia pestis GN=clpB PE=3 SV=2
Length = 857
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 89/175 (50%), Gaps = 14/175 (8%)
Query: 620 DSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLG-NGKRRGAGSKGDMWLLFMGPDRVGK 678
D R+ + L ++V Q EA AV+ + + + G + R GS LF+GP VGK
Sbjct: 557 DKLLRMEQDLHQRVIGQDEAVEAVSNAIRRSRAGLSDPNRPIGS-----FLFLGPTGVGK 611
Query: 679 KKMASALSELVSGASPIMIPLGPRRDHEEPEV-RVRGK----TALDKIG---EAVKRNPF 730
++ AL+ + + M+ + E+ V R+ G ++ G EAV+R P+
Sbjct: 612 TELCKALATFLFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPY 671
Query: 731 SVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLK 785
SVILL+++++A V + + ++ GRL D GR + N + I+T++ D ++
Sbjct: 672 SVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQ 726
>sp|P17422|CLPB_DICNO Chaperone protein ClpB OS=Dichelobacter nodosus GN=clpB PE=3 SV=2
Length = 860
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 87/171 (50%), Gaps = 16/171 (9%)
Query: 629 LMEKVWWQQEAASAVATTVTQCKLG-NGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSE 687
L E+V Q+ A AVA + + + G + +R GS LF+GP VGK ++ L++
Sbjct: 571 LNERVVGQKTAVEAVANAIRRNRAGLSDPKRPIGS-----FLFLGPTGVGKTELCRTLAQ 625
Query: 688 LVSGASPIMIPLGPRRDHEEPEVRVR------GKTALDKIG---EAVKRNPFSVILLEDI 738
+ + M+ + E+ V R G D+ G EAV+R P+SV+L +++
Sbjct: 626 FLFDSEENMVRIDMSEFMEKHSV-ARLIGAPPGYVGYDQGGYLTEAVRRKPYSVVLFDEV 684
Query: 739 DEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLKFLSQ 789
++A V + + ++ GRL D GR + + + I+T++ D ++ L++
Sbjct: 685 EKAHSDVFNTLLQVLDEGRLTDGQGRTVDFRHTVIIMTSNLGSDMIQLLAE 735
>sp|Q6GIB2|CLPB_STAAR Chaperone protein ClpB OS=Staphylococcus aureus (strain MRSA252)
GN=clpB PE=3 SV=1
Length = 869
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 80/159 (50%), Gaps = 14/159 (8%)
Query: 629 LMEKVWWQQEAASAVATTVTQCKLG-NGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSE 687
L ++V Q +A V+ V + + G R GS LF+GP VGK ++A +L+
Sbjct: 570 LHKRVVGQDKAVDLVSDAVVRARAGIKDPNRPIGS-----FLFLGPTGVGKTELAKSLAA 624
Query: 688 LVSGASPIMIPLGPRRDHEEPEVR--------VRGKTALDKIGEAVKRNPFSVILLEDID 739
+ + MI + E+ V G ++ EAV+RNP+SVILL++++
Sbjct: 625 SLFDSEKHMIRIDMSEYMEKHAVSRLIGAPPGYIGHDEGGQLTEAVRRNPYSVILLDEVE 684
Query: 740 EADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778
+A V + + ++ GRL DS GR + N I I+T++
Sbjct: 685 KAHTDVFNVLLQILDEGRLTDSKGRSVDFKNTIIIMTSN 723
Score = 33.5 bits (75), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 875 TNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGDALSIEIL 934
T + +MT + ++LN +D ++FKP+ + V +T+ ++ +SIE+
Sbjct: 743 TEKAVMTSLNAYFKPEILNRMDDIVLFKPLSIDDMSMIVDKILTQLNIRLLEQRISIEVS 802
Query: 935 DEALEKLVGGVWLGRTGLE 953
D+A WLG+ E
Sbjct: 803 DDA------KAWLGQEAYE 815
>sp|Q8NXE7|CLPB_STAAW Chaperone protein ClpB OS=Staphylococcus aureus (strain MW2)
GN=clpB PE=3 SV=1
Length = 869
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 80/159 (50%), Gaps = 14/159 (8%)
Query: 629 LMEKVWWQQEAASAVATTVTQCKLG-NGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSE 687
L ++V Q +A V+ V + + G R GS LF+GP VGK ++A +L+
Sbjct: 570 LHKRVVGQDKAVDLVSDAVVRARAGIKDPNRPIGS-----FLFLGPTGVGKTELAKSLAA 624
Query: 688 LVSGASPIMIPLGPRRDHEEPEVR--------VRGKTALDKIGEAVKRNPFSVILLEDID 739
+ + MI + E+ V G ++ EAV+RNP+SVILL++++
Sbjct: 625 SLFDSEKHMIRIDMSEYMEKHAVSRLIGAPPGYIGHDEGGQLTEAVRRNPYSVILLDEVE 684
Query: 740 EADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778
+A V + + ++ GRL DS GR + N I I+T++
Sbjct: 685 KAHTDVFNVLLQILDEGRLTDSKGRSVDFKNTIIIMTSN 723
Score = 33.5 bits (75), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 875 TNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGDALSIEIL 934
T + +MT + ++LN +D ++FKP+ + V +T+ ++ +SIE+
Sbjct: 743 TEKAVMTSLNAYFKPEILNRMDDIVLFKPLSIDDMSMIVDKILTQLNIRLLEQRISIEVS 802
Query: 935 DEALEKLVGGVWLGRTGLE 953
D+A WLG+ E
Sbjct: 803 DDA------KAWLGQEAYE 815
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 373,561,573
Number of Sequences: 539616
Number of extensions: 16103324
Number of successful extensions: 38309
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 37685
Number of HSP's gapped (non-prelim): 482
length of query: 1013
length of database: 191,569,459
effective HSP length: 128
effective length of query: 885
effective length of database: 122,498,611
effective search space: 108411270735
effective search space used: 108411270735
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 66 (30.0 bits)