Query 001788
Match_columns 1013
No_of_seqs 327 out of 2284
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 09:20:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001788.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001788hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0542 clpA ATP-binding subun 100.0 1E-123 3E-128 1109.1 54.0 698 11-975 1-766 (786)
2 KOG1051 Chaperone HSP104 and r 100.0 5E-120 1E-124 1089.8 55.6 792 1-986 1-852 (898)
3 TIGR03345 VI_ClpV1 type VI sec 100.0 1.5E-92 3.3E-97 878.5 57.0 756 12-974 1-841 (852)
4 CHL00095 clpC Clp protease ATP 100.0 1.4E-91 3E-96 874.3 57.2 720 9-975 2-793 (821)
5 PRK10865 protein disaggregatio 100.0 3E-89 6.6E-94 851.7 56.6 770 9-975 3-840 (857)
6 TIGR03346 chaperone_ClpB ATP-d 100.0 7.3E-89 1.6E-93 851.8 57.6 769 12-975 1-837 (852)
7 TIGR02639 ClpA ATP-dependent C 100.0 2.6E-85 5.6E-90 809.7 50.8 653 12-975 1-723 (731)
8 PRK11034 clpA ATP-dependent Cl 100.0 3.6E-84 7.9E-89 789.4 50.5 654 12-975 2-727 (758)
9 TIGR00382 clpX endopeptidase C 100.0 7.4E-30 1.6E-34 292.7 20.8 284 622-970 68-391 (413)
10 PRK05342 clpX ATP-dependent pr 100.0 6.1E-28 1.3E-32 278.5 20.9 286 622-970 62-385 (412)
11 COG1219 ClpX ATP-dependent pro 99.9 5.6E-23 1.2E-27 220.0 13.8 283 623-969 53-373 (408)
12 PF07724 AAA_2: AAA domain (Cd 99.9 4.2E-23 9.1E-28 212.1 8.9 120 663-786 1-136 (171)
13 KOG0745 Putative ATP-dependent 99.9 2.7E-21 5.9E-26 213.9 17.9 287 623-968 137-513 (564)
14 COG3604 FhlA Transcriptional r 99.9 3.6E-21 7.8E-26 217.8 16.5 221 631-963 223-456 (550)
15 COG2204 AtoC Response regulato 99.9 8.1E-21 1.8E-25 218.7 19.8 219 631-961 141-372 (464)
16 KOG0733 Nuclear AAA ATPase (VC 99.9 1.2E-19 2.6E-24 207.6 26.6 123 204-357 229-360 (802)
17 PRK05201 hslU ATP-dependent pr 99.8 2E-20 4.4E-25 212.1 17.4 237 622-968 6-411 (443)
18 COG3829 RocR Transcriptional r 99.8 5.4E-20 1.2E-24 211.1 15.8 219 631-961 245-477 (560)
19 TIGR00390 hslU ATP-dependent p 99.8 1.3E-19 2.7E-24 205.6 17.4 235 623-967 4-408 (441)
20 KOG0730 AAA+-type ATPase [Post 99.8 1.7E-18 3.6E-23 201.6 25.1 127 192-359 219-351 (693)
21 TIGR00763 lon ATP-dependent pr 99.8 6.3E-19 1.4E-23 220.3 23.3 254 590-970 290-561 (775)
22 TIGR02974 phageshock_pspF psp 99.8 2.6E-18 5.6E-23 194.5 17.9 220 633-962 1-232 (329)
23 PRK10787 DNA-binding ATP-depen 99.8 6.9E-18 1.5E-22 209.3 23.3 236 618-971 309-563 (784)
24 TIGR01817 nifA Nif-specific re 99.8 1.7E-17 3.6E-22 200.2 19.2 218 632-961 197-426 (534)
25 COG1220 HslU ATP-dependent pro 99.7 2.3E-17 5E-22 178.3 15.1 89 886-974 318-410 (444)
26 TIGR01243 CDC48 AAA family ATP 99.7 2.6E-16 5.7E-21 196.4 25.7 123 204-357 218-345 (733)
27 PRK11608 pspF phage shock prot 99.7 8.7E-17 1.9E-21 182.1 18.2 222 631-961 6-238 (326)
28 CHL00181 cbbX CbbX; Provisiona 99.7 1.3E-16 2.7E-21 177.4 18.2 225 617-970 9-261 (287)
29 COG2256 MGS1 ATPase related to 99.7 6.7E-17 1.5E-21 179.5 15.0 187 631-957 24-214 (436)
30 PRK05022 anaerobic nitric oxid 99.7 1.7E-16 3.8E-21 190.1 19.7 222 631-963 187-420 (509)
31 TIGR02329 propionate_PrpR prop 99.7 1.8E-16 4E-21 188.8 19.4 216 632-961 213-448 (526)
32 PRK15424 propionate catabolism 99.7 2.1E-16 4.6E-21 188.1 19.5 217 631-961 219-463 (538)
33 TIGR02880 cbbX_cfxQ probable R 99.7 3.9E-16 8.5E-21 173.4 19.6 222 620-970 11-260 (284)
34 PRK11388 DNA-binding transcrip 99.7 2.2E-16 4.7E-21 194.6 18.0 220 631-961 325-552 (638)
35 PRK10820 DNA-binding transcrip 99.7 7.3E-16 1.6E-20 184.9 17.9 220 631-961 204-435 (520)
36 PF05496 RuvB_N: Holliday junc 99.7 1.8E-15 3.8E-20 159.0 17.9 193 631-958 24-224 (233)
37 COG1221 PspF Transcriptional r 99.7 3.4E-16 7.4E-21 177.9 13.3 218 630-964 77-310 (403)
38 COG0466 Lon ATP-dependent Lon 99.7 2.6E-15 5.7E-20 176.6 19.7 237 618-970 310-564 (782)
39 PRK15429 formate hydrogenlyase 99.7 2.5E-15 5.5E-20 186.4 20.3 219 632-961 377-607 (686)
40 PRK10923 glnG nitrogen regulat 99.6 3.1E-15 6.8E-20 177.9 19.2 219 632-961 139-369 (469)
41 PF00158 Sigma54_activat: Sigm 99.6 3.2E-15 7E-20 153.4 11.8 136 633-779 1-143 (168)
42 TIGR02915 PEP_resp_reg putativ 99.6 2.2E-14 4.7E-19 169.6 19.7 219 632-961 140-370 (445)
43 TIGR02881 spore_V_K stage V sp 99.6 3.9E-14 8.4E-19 155.8 19.5 210 632-970 7-245 (261)
44 PRK15115 response regulator Gl 99.6 5.9E-14 1.3E-18 165.8 21.0 219 632-961 135-365 (444)
45 COG3283 TyrR Transcriptional r 99.6 4.9E-14 1.1E-18 153.5 18.4 220 631-960 204-429 (511)
46 TIGR01818 ntrC nitrogen regula 99.6 4.6E-14 1E-18 167.6 19.9 218 632-961 135-365 (463)
47 KOG2004 Mitochondrial ATP-depe 99.6 8E-14 1.7E-18 163.0 20.1 249 596-971 387-653 (906)
48 KOG2170 ATPase of the AAA+ sup 99.6 2.6E-14 5.7E-19 153.5 14.0 156 621-787 72-232 (344)
49 PRK11361 acetoacetate metaboli 99.5 1.1E-13 2.5E-18 163.9 19.7 219 632-961 144-374 (457)
50 TIGR02902 spore_lonB ATP-depen 99.5 1.3E-13 2.9E-18 165.5 18.3 199 632-960 66-309 (531)
51 PRK14956 DNA polymerase III su 99.5 1.5E-13 3.2E-18 160.1 17.3 185 631-960 18-227 (484)
52 PRK07003 DNA polymerase III su 99.5 3.1E-13 6.7E-18 162.5 17.9 191 631-959 16-224 (830)
53 PRK12323 DNA polymerase III su 99.5 3.4E-13 7.4E-18 160.4 17.0 191 631-958 16-228 (700)
54 KOG2028 ATPase related to the 99.5 2.1E-13 4.5E-18 148.8 12.6 191 632-957 139-338 (554)
55 PRK14949 DNA polymerase III su 99.5 6E-13 1.3E-17 162.8 18.0 193 631-960 16-225 (944)
56 PRK10365 transcriptional regul 99.5 1.2E-12 2.5E-17 154.6 18.6 195 668-961 165-370 (441)
57 COG3284 AcoR Transcriptional a 99.5 2.7E-13 5.8E-18 159.1 12.8 185 668-960 339-537 (606)
58 PRK14958 DNA polymerase III su 99.5 1.2E-12 2.7E-17 156.0 17.9 185 631-960 16-225 (509)
59 PRK14960 DNA polymerase III su 99.5 1.1E-12 2.3E-17 156.6 17.1 185 631-960 15-224 (702)
60 PRK07764 DNA polymerase III su 99.4 1.5E-12 3.1E-17 162.2 18.3 185 631-960 15-226 (824)
61 PRK13531 regulatory ATPase Rav 99.4 2.3E-12 5.1E-17 149.6 18.6 140 619-779 8-156 (498)
62 PRK14957 DNA polymerase III su 99.4 1.7E-12 3.8E-17 154.7 17.7 185 631-960 16-225 (546)
63 KOG0989 Replication factor C, 99.4 2.7E-12 5.9E-17 138.6 16.4 121 631-779 36-168 (346)
64 TIGR00635 ruvB Holliday juncti 99.4 4.4E-12 9.5E-17 142.5 19.0 193 631-958 4-204 (305)
65 PRK07994 DNA polymerase III su 99.4 2.6E-12 5.5E-17 155.4 18.1 190 631-958 16-223 (647)
66 PRK14951 DNA polymerase III su 99.4 2.6E-12 5.7E-17 155.0 17.9 192 631-959 16-229 (618)
67 PRK14952 DNA polymerase III su 99.4 3.4E-12 7.3E-17 153.6 18.5 185 631-960 13-224 (584)
68 PRK14964 DNA polymerase III su 99.4 3.3E-12 7.1E-17 150.4 17.9 185 631-960 13-222 (491)
69 PRK14962 DNA polymerase III su 99.4 2.3E-12 5E-17 152.2 16.6 184 631-959 14-222 (472)
70 COG1223 Predicted ATPase (AAA+ 99.4 1.7E-12 3.8E-17 136.5 13.3 204 630-970 120-338 (368)
71 PRK08691 DNA polymerase III su 99.4 3.5E-12 7.7E-17 153.5 17.6 193 631-960 16-225 (709)
72 PRK13342 recombination factor 99.4 3.3E-12 7.1E-17 149.6 17.0 182 631-959 12-200 (413)
73 PRK14961 DNA polymerase III su 99.4 5.1E-12 1.1E-16 145.5 18.3 192 631-959 16-224 (363)
74 PRK14959 DNA polymerase III su 99.4 3.8E-12 8.2E-17 152.7 17.3 190 631-958 16-223 (624)
75 PRK00080 ruvB Holliday junctio 99.4 8.5E-12 1.8E-16 141.9 19.4 194 631-959 25-226 (328)
76 PLN03025 replication factor C 99.4 5.2E-12 1.1E-16 143.1 17.5 181 631-957 13-202 (319)
77 COG1222 RPT1 ATP-dependent 26S 99.4 2.3E-12 5E-17 141.7 13.2 127 632-779 152-299 (406)
78 KOG0736 Peroxisome assembly fa 99.4 3.8E-11 8.1E-16 142.0 22.7 66 204-283 437-506 (953)
79 PRK05563 DNA polymerase III su 99.4 1.1E-11 2.4E-16 149.6 18.6 184 631-959 16-224 (559)
80 PRK14965 DNA polymerase III su 99.4 9.2E-12 2E-16 151.0 17.5 192 631-959 16-224 (576)
81 PRK13341 recombination factor 99.4 1.2E-11 2.6E-16 152.3 18.6 187 631-960 28-222 (725)
82 PRK06645 DNA polymerase III su 99.4 1.6E-11 3.5E-16 145.6 18.3 193 631-960 21-234 (507)
83 PRK14969 DNA polymerase III su 99.3 2E-11 4.4E-16 146.5 18.0 191 631-959 16-224 (527)
84 PRK14963 DNA polymerase III su 99.3 2.4E-11 5.3E-16 144.6 18.4 185 631-960 14-222 (504)
85 TIGR02903 spore_lon_C ATP-depe 99.3 3.1E-11 6.8E-16 147.3 19.3 116 631-759 154-295 (615)
86 PRK14955 DNA polymerase III su 99.3 2.6E-11 5.6E-16 141.3 17.8 191 631-958 16-231 (397)
87 PRK08451 DNA polymerase III su 99.3 4E-11 8.6E-16 142.5 19.1 193 631-960 14-223 (535)
88 COG2255 RuvB Holliday junction 99.3 5.3E-11 1.2E-15 127.5 18.1 107 631-759 26-133 (332)
89 PRK06305 DNA polymerase III su 99.3 3E-11 6.4E-16 142.5 17.7 193 631-960 17-227 (451)
90 PRK07133 DNA polymerase III su 99.3 2.8E-11 6.2E-16 147.2 17.9 192 631-959 18-223 (725)
91 PRK05896 DNA polymerase III su 99.3 3.1E-11 6.6E-16 144.3 17.9 191 631-958 16-223 (605)
92 PRK09111 DNA polymerase III su 99.3 4.2E-11 9E-16 144.9 18.2 192 631-959 24-237 (598)
93 PRK14954 DNA polymerase III su 99.3 4.7E-11 1E-15 144.7 18.4 192 631-959 16-232 (620)
94 CHL00195 ycf46 Ycf46; Provisio 99.3 4.7E-11 1E-15 141.3 17.6 93 668-778 262-368 (489)
95 PRK06647 DNA polymerase III su 99.3 6.5E-11 1.4E-15 142.7 17.9 191 631-959 16-224 (563)
96 PRK14953 DNA polymerase III su 99.3 7.7E-11 1.7E-15 140.0 18.0 192 631-959 16-224 (486)
97 TIGR02640 gas_vesic_GvpN gas v 99.3 5.7E-11 1.2E-15 130.9 15.6 107 668-779 24-160 (262)
98 PRK14971 DNA polymerase III su 99.3 1E-10 2.2E-15 142.4 19.1 184 631-959 17-226 (614)
99 PHA02544 44 clamp loader, smal 99.3 1.3E-10 2.7E-15 131.4 17.9 187 631-958 21-212 (316)
100 TIGR02397 dnaX_nterm DNA polym 99.2 1.4E-10 3E-15 133.0 17.4 191 631-959 14-222 (355)
101 KOG0735 AAA+-type ATPase [Post 99.2 1.8E-09 3.9E-14 126.9 26.3 80 668-754 704-796 (952)
102 PRK14950 DNA polymerase III su 99.2 1.7E-10 3.6E-15 140.7 18.2 125 631-778 16-158 (585)
103 COG2812 DnaX DNA polymerase II 99.2 7E-11 1.5E-15 138.9 13.9 192 631-959 16-224 (515)
104 PRK03992 proteasome-activating 99.2 1.4E-10 3.1E-15 134.7 16.4 128 631-779 131-279 (389)
105 PRK07940 DNA polymerase III su 99.2 2.2E-10 4.8E-15 132.6 17.5 132 631-778 5-155 (394)
106 PRK14948 DNA polymerase III su 99.2 2.5E-10 5.5E-15 139.1 18.5 191 631-958 16-225 (620)
107 PRK14970 DNA polymerase III su 99.2 3.2E-10 7E-15 130.9 18.5 187 631-960 17-214 (367)
108 PRK12402 replication factor C 99.2 3.3E-10 7.1E-15 128.9 17.3 124 631-778 15-163 (337)
109 PRK08903 DnaA regulatory inact 99.2 5.2E-10 1.1E-14 120.4 17.9 157 668-960 45-204 (227)
110 TIGR03420 DnaA_homol_Hda DnaA 99.2 2E-10 4.3E-15 123.2 14.4 161 668-960 41-206 (226)
111 PRK04195 replication factor C 99.2 4.9E-10 1.1E-14 133.9 18.1 104 632-755 15-128 (482)
112 PLN00020 ribulose bisphosphate 99.2 8.7E-10 1.9E-14 123.6 17.7 105 668-779 151-277 (413)
113 PTZ00454 26S protease regulato 99.2 4.7E-10 1E-14 130.2 16.1 127 631-778 145-292 (398)
114 PRK00440 rfc replication facto 99.1 1.5E-09 3.2E-14 122.5 18.8 181 632-958 18-206 (319)
115 COG0714 MoxR-like ATPases [Gen 99.1 6.6E-10 1.4E-14 126.5 15.5 135 620-778 13-162 (329)
116 PTZ00361 26 proteosome regulat 99.1 4.6E-10 1E-14 131.1 13.9 126 632-778 184-330 (438)
117 PRK06893 DNA replication initi 99.1 1.3E-09 2.8E-14 117.8 15.9 164 667-960 41-208 (229)
118 COG1224 TIP49 DNA helicase TIP 99.1 3.4E-09 7.3E-14 116.7 19.0 65 630-703 38-102 (450)
119 PRK13407 bchI magnesium chelat 99.1 9.7E-10 2.1E-14 124.4 14.9 135 631-778 8-179 (334)
120 TIGR02442 Cob-chelat-sub cobal 99.1 1.7E-09 3.6E-14 133.1 17.8 132 631-779 4-178 (633)
121 TIGR02639 ClpA ATP-dependent C 99.1 7.6E-10 1.7E-14 138.4 14.9 187 631-950 182-388 (731)
122 TIGR03689 pup_AAA proteasome A 99.1 7.3E-10 1.6E-14 131.2 13.5 128 631-779 182-342 (512)
123 TIGR01241 FtsH_fam ATP-depende 99.1 1.4E-09 3.1E-14 130.4 16.2 126 632-779 56-202 (495)
124 KOG0727 26S proteasome regulat 99.1 7.9E-10 1.7E-14 116.0 11.8 99 668-779 192-303 (408)
125 PRK08084 DNA replication initi 99.1 1.8E-09 3.9E-14 117.2 14.9 65 887-960 148-214 (235)
126 TIGR03345 VI_ClpV1 type VI sec 99.1 1.7E-09 3.8E-14 136.4 16.8 187 631-950 187-393 (852)
127 CHL00176 ftsH cell division pr 99.1 2.8E-09 6.1E-14 130.1 17.9 103 631-741 183-287 (638)
128 PRK08727 hypothetical protein; 99.1 2.5E-09 5.3E-14 115.9 15.3 167 666-964 42-213 (233)
129 TIGR01242 26Sp45 26S proteasom 99.1 1.6E-09 3.5E-14 125.0 14.6 136 631-779 122-270 (364)
130 TIGR02030 BchI-ChlI magnesium 99.0 2.1E-09 4.5E-14 122.0 14.8 114 631-758 4-160 (337)
131 PHA02244 ATPase-like protein 99.0 1.3E-08 2.7E-13 115.3 20.5 132 631-779 96-230 (383)
132 PRK05564 DNA polymerase III su 99.0 4.5E-09 9.8E-14 118.8 16.9 124 631-778 4-131 (313)
133 PTZ00112 origin recognition co 99.0 3E-09 6.4E-14 128.9 15.9 133 630-778 754-910 (1164)
134 CHL00081 chlI Mg-protoporyphyr 99.0 2.7E-09 5.9E-14 121.1 14.5 134 631-778 17-195 (350)
135 PF14532 Sigma54_activ_2: Sigm 99.0 8.1E-10 1.8E-14 109.8 9.0 109 634-779 1-109 (138)
136 KOG0733 Nuclear AAA ATPase (VC 99.0 2.7E-09 5.8E-14 123.9 14.4 128 632-779 191-338 (802)
137 PRK09112 DNA polymerase III su 99.0 8.6E-09 1.9E-13 117.9 18.0 125 631-778 23-179 (351)
138 PF06068 TIP49: TIP49 C-termin 99.0 3.9E-09 8.5E-14 118.2 14.1 64 631-703 24-87 (398)
139 TIGR00368 Mg chelatase-related 99.0 6.3E-09 1.4E-13 123.8 16.0 133 631-780 192-348 (499)
140 PRK07399 DNA polymerase III su 99.0 4.8E-09 1E-13 118.3 14.1 125 630-778 3-161 (314)
141 KOG0734 AAA+-type ATPase conta 99.0 8.6E-09 1.9E-13 118.0 15.6 128 630-779 303-448 (752)
142 TIGR01650 PD_CobS cobaltochela 99.0 7.4E-09 1.6E-13 115.9 14.9 105 668-779 67-187 (327)
143 COG0464 SpoVK ATPases of the A 99.0 4.8E-09 1E-13 126.0 14.2 98 204-329 24-125 (494)
144 PF00004 AAA: ATPase family as 99.0 1.6E-09 3.5E-14 105.4 8.2 97 668-779 1-111 (132)
145 CHL00206 ycf2 Ycf2; Provisiona 98.9 7.2E-09 1.6E-13 133.6 15.2 103 668-779 1633-1781(2281)
146 TIGR00678 holB DNA polymerase 98.9 1.2E-08 2.5E-13 106.8 13.9 100 668-778 17-134 (188)
147 PRK07471 DNA polymerase III su 98.9 1.3E-08 2.9E-13 116.9 15.2 125 631-778 19-179 (365)
148 PRK05642 DNA replication initi 98.9 2E-08 4.2E-13 109.0 15.5 163 668-961 48-214 (234)
149 PF13177 DNA_pol3_delta2: DNA 98.9 4.3E-09 9.3E-14 107.7 9.2 121 635-778 1-140 (162)
150 smart00350 MCM minichromosome 98.9 3E-08 6.5E-13 119.3 17.7 155 620-779 192-352 (509)
151 PF07728 AAA_5: AAA domain (dy 98.9 2.1E-09 4.6E-14 106.5 6.1 106 668-780 2-124 (139)
152 PF07726 AAA_3: ATPase family 98.9 6.3E-10 1.4E-14 107.7 2.1 105 668-778 2-111 (131)
153 PRK08058 DNA polymerase III su 98.9 1.1E-08 2.4E-13 116.4 12.5 124 631-778 5-148 (329)
154 TIGR02928 orc1/cdc6 family rep 98.9 3.8E-08 8.3E-13 113.4 16.9 134 631-778 15-173 (365)
155 PF01078 Mg_chelatase: Magnesi 98.9 3.7E-09 8.1E-14 110.8 7.3 133 631-780 3-159 (206)
156 KOG0728 26S proteasome regulat 98.8 1.5E-08 3.2E-13 106.5 11.0 126 633-779 149-295 (404)
157 PTZ00111 DNA replication licen 98.8 3.8E-08 8.3E-13 121.8 16.1 155 620-779 439-609 (915)
158 KOG0738 AAA+-type ATPase [Post 98.8 5.2E-08 1.1E-12 108.5 15.1 109 632-754 213-341 (491)
159 CHL00095 clpC Clp protease ATP 98.8 2.7E-08 5.9E-13 126.1 14.8 120 631-778 179-315 (821)
160 PRK11034 clpA ATP-dependent Cl 98.8 2.7E-08 5.8E-13 123.6 14.3 123 631-779 186-324 (758)
161 TIGR00362 DnaA chromosomal rep 98.8 1.9E-08 4.1E-13 117.8 12.2 171 668-960 139-315 (405)
162 smart00763 AAA_PrkA PrkA AAA d 98.8 5.9E-08 1.3E-12 109.9 15.4 53 632-691 52-104 (361)
163 KOG0731 AAA+-type ATPase conta 98.8 4.2E-08 9.2E-13 118.9 14.8 127 631-779 311-459 (774)
164 KOG0729 26S proteasome regulat 98.8 1.5E-08 3.3E-13 107.2 9.4 128 631-779 177-325 (435)
165 TIGR01243 CDC48 AAA family ATP 98.8 1E-07 2.3E-12 119.7 18.4 123 632-778 179-322 (733)
166 PF06309 Torsin: Torsin; Inte 98.8 1.4E-08 3E-13 98.2 8.1 108 621-735 15-127 (127)
167 TIGR00764 lon_rel lon-related 98.8 6.4E-08 1.4E-12 118.2 15.6 53 625-692 12-64 (608)
168 PRK00411 cdc6 cell division co 98.8 1.4E-07 2.9E-12 110.1 17.8 130 630-778 29-181 (394)
169 PRK04132 replication factor C 98.8 6.5E-08 1.4E-12 120.4 15.8 159 668-959 567-735 (846)
170 COG0470 HolB ATPase involved i 98.8 4.2E-08 9E-13 110.8 13.1 121 632-778 2-147 (325)
171 PF00308 Bac_DnaA: Bacterial d 98.8 1.9E-08 4.1E-13 108.0 9.7 172 668-961 37-214 (219)
172 PRK00149 dnaA chromosomal repl 98.8 4E-08 8.6E-13 116.7 12.9 171 668-960 151-327 (450)
173 PRK06620 hypothetical protein; 98.8 1.2E-07 2.6E-12 101.5 15.0 62 889-959 130-193 (214)
174 cd00009 AAA The AAA+ (ATPases 98.8 6.7E-08 1.4E-12 94.4 12.1 127 634-778 1-128 (151)
175 TIGR03346 chaperone_ClpB ATP-d 98.8 5.6E-08 1.2E-12 123.6 14.6 121 631-779 173-311 (852)
176 KOG0991 Replication factor C, 98.8 9E-08 1.9E-12 100.1 13.3 119 631-781 27-154 (333)
177 PRK14087 dnaA chromosomal repl 98.8 9.8E-08 2.1E-12 112.9 15.3 175 668-961 144-325 (450)
178 PRK13765 ATP-dependent proteas 98.7 3.2E-08 6.8E-13 120.6 11.2 53 625-692 25-77 (637)
179 PRK10865 protein disaggregatio 98.7 3.4E-08 7.3E-13 125.2 11.7 121 631-779 178-316 (857)
180 PRK12422 chromosomal replicati 98.7 1.2E-07 2.6E-12 111.8 15.1 171 668-960 144-318 (445)
181 TIGR02031 BchD-ChlD magnesium 98.7 1.2E-07 2.5E-12 115.7 14.9 106 668-778 19-135 (589)
182 COG4650 RtcR Sigma54-dependent 98.7 3.9E-08 8.4E-13 105.4 8.8 123 627-760 180-313 (531)
183 PRK08769 DNA polymerase III su 98.7 1.7E-07 3.6E-12 105.8 14.0 123 632-778 5-151 (319)
184 KOG0742 AAA+-type ATPase [Post 98.7 1.9E-07 4.1E-12 104.2 14.0 67 668-740 387-454 (630)
185 PRK14086 dnaA chromosomal repl 98.7 2.7E-07 5.9E-12 111.0 16.5 171 668-960 317-493 (617)
186 PRK14088 dnaA chromosomal repl 98.7 2.1E-07 4.6E-12 109.9 15.2 65 887-960 244-310 (440)
187 PRK06871 DNA polymerase III su 98.7 1.9E-07 4.1E-12 105.5 14.1 122 633-778 4-145 (325)
188 PRK05707 DNA polymerase III su 98.7 2.2E-07 4.8E-12 105.5 14.3 119 633-778 5-144 (328)
189 PRK10733 hflB ATP-dependent me 98.6 3.8E-07 8.1E-12 112.6 16.6 126 632-779 153-299 (644)
190 KOG1942 DNA helicase, TBP-inte 98.6 4.8E-07 1E-11 97.3 14.4 69 886-968 350-418 (456)
191 PRK11331 5-methylcytosine-spec 98.6 8.1E-07 1.7E-11 103.3 17.5 132 632-779 176-334 (459)
192 PF05673 DUF815: Protein of un 98.6 1.7E-06 3.7E-11 92.9 18.4 120 633-779 29-150 (249)
193 TIGR00602 rad24 checkpoint pro 98.6 5.7E-07 1.2E-11 109.5 16.7 52 631-690 84-135 (637)
194 COG1474 CDC6 Cdc6-related prot 98.6 3.4E-07 7.3E-12 105.4 13.8 131 631-778 17-164 (366)
195 PRK09087 hypothetical protein; 98.6 5.4E-07 1.2E-11 97.2 14.5 65 887-960 134-200 (226)
196 KOG0739 AAA+-type ATPase [Post 98.6 1.5E-07 3.3E-12 101.4 9.2 127 633-779 135-278 (439)
197 KOG0726 26S proteasome regulat 98.6 1.2E-07 2.6E-12 101.9 8.3 128 631-779 185-333 (440)
198 PRK06090 DNA polymerase III su 98.6 3.9E-07 8.5E-12 102.7 12.9 122 632-778 4-146 (319)
199 PRK07993 DNA polymerase III su 98.6 3.4E-07 7.4E-12 104.2 12.5 123 632-778 3-146 (334)
200 KOG0741 AAA+-type ATPase [Post 98.6 2.9E-06 6.4E-11 97.7 18.9 126 204-351 262-393 (744)
201 KOG0652 26S proteasome regulat 98.5 3.1E-07 6.8E-12 97.2 9.8 107 632-754 172-300 (424)
202 COG0606 Predicted ATPase with 98.5 3.8E-07 8.3E-12 105.1 11.1 133 631-780 179-336 (490)
203 PRK09862 putative ATP-dependen 98.5 3.3E-07 7.1E-12 109.0 10.4 132 631-779 191-346 (506)
204 KOG0743 AAA+-type ATPase [Post 98.5 1.2E-06 2.5E-11 100.4 13.8 90 668-778 238-346 (457)
205 PRK12377 putative replication 98.5 2.4E-07 5.2E-12 101.0 7.2 107 667-785 103-211 (248)
206 PRK06964 DNA polymerase III su 98.4 1.3E-06 2.8E-11 99.5 12.4 121 633-778 3-170 (342)
207 KOG0744 AAA+-type ATPase [Post 98.4 5.2E-07 1.1E-11 98.6 8.4 99 668-779 180-306 (423)
208 PRK08699 DNA polymerase III su 98.4 3.3E-06 7.1E-11 95.9 14.6 110 633-756 3-140 (325)
209 TIGR03689 pup_AAA proteasome A 98.4 1.9E-06 4.1E-11 102.6 12.5 143 192-360 217-366 (512)
210 COG0465 HflB ATP-dependent Zn 98.4 2.5E-06 5.4E-11 102.2 13.4 127 631-779 150-297 (596)
211 KOG0730 AAA+-type ATPase [Post 98.3 1E-06 2.2E-11 104.3 8.9 123 204-360 474-603 (693)
212 PF10431 ClpB_D2-small: C-term 98.3 7.9E-07 1.7E-11 80.2 6.2 72 904-975 1-75 (81)
213 KOG2035 Replication factor C, 98.3 6.7E-06 1.5E-10 88.5 13.7 101 668-779 37-166 (351)
214 COG1241 MCM2 Predicted ATPase 98.3 8E-06 1.7E-10 99.4 16.0 131 623-763 278-417 (682)
215 smart00382 AAA ATPases associa 98.3 1.1E-06 2.4E-11 84.7 7.1 109 668-779 5-125 (148)
216 TIGR03015 pepcterm_ATPase puta 98.3 3.1E-05 6.7E-10 85.3 19.4 71 890-965 178-248 (269)
217 KOG0732 AAA+-type ATPase conta 98.3 5.2E-06 1.1E-10 103.7 13.8 101 668-779 302-415 (1080)
218 KOG2680 DNA helicase TIP49, TB 98.3 9.1E-06 2E-10 88.0 13.6 65 630-703 39-103 (454)
219 PF00004 AAA: ATPase family as 98.3 3.4E-06 7.3E-11 81.9 9.6 118 204-351 4-125 (132)
220 KOG0651 26S proteasome regulat 98.3 2.7E-06 5.8E-11 92.8 9.2 133 633-779 134-280 (388)
221 PF02861 Clp_N: Clp amino term 98.3 1.1E-06 2.3E-11 72.4 4.7 52 23-80 1-52 (53)
222 PRK08116 hypothetical protein; 98.3 1.5E-06 3.2E-11 96.2 7.1 105 668-784 117-225 (268)
223 COG0593 DnaA ATPase involved i 98.2 3.8E-05 8.2E-10 88.7 17.0 66 886-960 224-291 (408)
224 COG0542 clpA ATP-binding subun 98.2 1.4E-05 3.1E-10 98.1 14.3 114 631-759 170-301 (786)
225 PRK07276 DNA polymerase III su 98.2 1.1E-05 2.3E-10 89.9 11.7 118 635-778 6-142 (290)
226 KOG0737 AAA+-type ATPase [Post 98.2 2.9E-05 6.4E-10 87.0 15.1 65 668-741 130-198 (386)
227 PRK05917 DNA polymerase III su 98.1 2.5E-05 5.4E-10 86.8 12.8 98 668-779 22-134 (290)
228 COG0464 SpoVK ATPases of the A 98.1 1.3E-05 2.8E-10 96.5 11.2 122 204-359 282-410 (494)
229 COG1239 ChlI Mg-chelatase subu 98.1 5.8E-05 1.3E-09 86.3 14.7 135 629-780 15-197 (423)
230 KOG0740 AAA+-type ATPase [Post 98.0 3.5E-05 7.5E-10 89.1 12.6 99 631-741 153-257 (428)
231 PRK06526 transposase; Provisio 98.0 3E-06 6.4E-11 93.1 3.7 103 668-785 101-206 (254)
232 KOG0480 DNA replication licens 98.0 4E-05 8.8E-10 90.4 12.7 141 618-762 332-475 (764)
233 PRK03992 proteasome-activating 98.0 3.5E-05 7.6E-10 89.9 11.6 128 192-360 166-303 (389)
234 PRK07132 DNA polymerase III su 98.0 8.7E-05 1.9E-09 83.3 14.0 93 668-778 21-128 (299)
235 COG1222 RPT1 ATP-dependent 26S 98.0 1.3E-05 2.8E-10 89.3 7.2 131 204-363 191-326 (406)
236 KOG0741 AAA+-type ATPase [Post 98.0 7.2E-06 1.6E-10 94.5 5.2 97 668-779 259-378 (744)
237 PRK07952 DNA replication prote 98.0 1.1E-05 2.5E-10 87.8 6.5 107 668-786 102-211 (244)
238 CHL00195 ycf46 Ycf46; Provisio 98.0 3.6E-05 7.8E-10 91.8 11.2 122 204-360 265-393 (489)
239 PLN00020 ribulose bisphosphate 97.9 3.2E-05 7E-10 87.5 9.8 122 203-352 153-293 (413)
240 KOG0734 AAA+-type ATPase conta 97.9 4.4E-05 9.5E-10 88.4 11.0 132 192-364 338-476 (752)
241 PRK15455 PrkA family serine pr 97.9 2.8E-05 6.1E-10 92.4 9.4 53 631-690 76-128 (644)
242 KOG1969 DNA replication checkp 97.9 0.00011 2.4E-09 88.2 13.9 77 667-754 328-412 (877)
243 PF00910 RNA_helicase: RNA hel 97.9 2.3E-05 5E-10 74.5 6.6 94 668-779 1-107 (107)
244 PF01695 IstB_IS21: IstB-like 97.9 3E-06 6.4E-11 88.2 0.5 105 668-786 50-156 (178)
245 COG1484 DnaC DNA replication p 97.9 1.9E-05 4.1E-10 86.8 6.6 106 668-786 108-215 (254)
246 PF00493 MCM: MCM2/3/5 family 97.9 9.5E-06 2.1E-10 92.6 4.3 151 620-779 13-173 (331)
247 PF13173 AAA_14: AAA domain 97.9 3.7E-05 8.1E-10 75.4 7.9 81 667-756 4-87 (128)
248 PRK08181 transposase; Validate 97.9 1.1E-05 2.3E-10 89.2 4.3 104 668-785 109-214 (269)
249 PRK06835 DNA replication prote 97.8 3E-05 6.6E-10 88.1 7.4 106 668-785 186-294 (329)
250 TIGR02881 spore_V_K stage V sp 97.8 6.5E-05 1.4E-09 82.9 9.8 129 193-357 44-177 (261)
251 TIGR01241 FtsH_fam ATP-depende 97.8 6.8E-05 1.5E-09 90.4 10.8 129 193-359 90-225 (495)
252 PRK08939 primosomal protein Dn 97.8 2.5E-05 5.4E-10 88.1 6.5 106 668-785 159-266 (306)
253 KOG0478 DNA replication licens 97.8 0.00011 2.3E-09 87.6 11.3 130 621-760 419-557 (804)
254 PF13401 AAA_22: AAA domain; P 97.8 2E-05 4.4E-10 76.7 4.4 88 667-754 6-113 (131)
255 PRK06921 hypothetical protein; 97.8 2.1E-05 4.5E-10 87.1 4.5 104 667-785 119-230 (266)
256 PTZ00454 26S protease regulato 97.8 0.00011 2.3E-09 85.9 10.6 125 204-360 185-317 (398)
257 KOG0738 AAA+-type ATPase [Post 97.8 0.00015 3.2E-09 81.5 11.1 127 204-362 251-385 (491)
258 PRK09183 transposase/IS protei 97.8 2.2E-05 4.7E-10 86.6 4.6 104 668-786 105-212 (259)
259 PRK13406 bchD magnesium chelat 97.8 0.00014 3E-09 88.6 11.8 94 668-769 28-134 (584)
260 PF03215 Rad17: Rad17 cell cyc 97.7 0.00099 2.1E-08 80.2 18.5 50 633-690 21-70 (519)
261 KOG0736 Peroxisome assembly fa 97.7 9.3E-05 2E-09 89.1 9.5 126 204-357 711-842 (953)
262 CHL00176 ftsH cell division pr 97.7 0.00016 3.5E-09 88.9 11.5 133 192-360 217-354 (638)
263 PF12774 AAA_6: Hydrolytic ATP 97.7 0.00066 1.4E-08 73.6 14.8 75 668-754 35-109 (231)
264 KOG0990 Replication factor C, 97.7 0.00012 2.6E-09 80.7 8.9 105 632-754 42-156 (360)
265 PRK05818 DNA polymerase III su 97.7 0.00017 3.6E-09 78.8 9.7 97 668-778 10-126 (261)
266 COG2607 Predicted ATPase (AAA+ 97.7 0.0014 3E-08 69.9 16.1 120 633-779 62-183 (287)
267 PTZ00361 26 proteosome regulat 97.6 0.0002 4.4E-09 84.3 10.3 127 204-360 223-355 (438)
268 CHL00181 cbbX CbbX; Provisiona 97.6 0.00017 3.7E-09 80.7 9.0 125 204-357 65-195 (287)
269 KOG0740 AAA+-type ATPase [Post 97.6 0.00011 2.4E-09 85.0 7.1 124 204-360 192-321 (428)
270 TIGR02880 cbbX_cfxQ probable R 97.5 0.00037 8.1E-09 77.9 10.5 126 204-357 64-194 (284)
271 PF01637 Arch_ATPase: Archaeal 97.5 0.00034 7.4E-09 74.5 8.7 110 633-755 1-150 (234)
272 PF05621 TniB: Bacterial TniB 97.5 0.00062 1.3E-08 75.7 10.8 131 192-357 62-212 (302)
273 PRK10733 hflB ATP-dependent me 97.5 0.00056 1.2E-08 84.9 11.4 131 192-360 186-323 (644)
274 CHL00206 ycf2 Ycf2; Provisiona 97.5 0.00025 5.5E-09 93.1 8.5 123 203-362 1635-1807(2281)
275 PF12775 AAA_7: P-loop contain 97.4 0.0008 1.7E-08 74.8 11.1 109 668-778 36-156 (272)
276 COG2256 MGS1 ATPase related to 97.4 0.00034 7.4E-09 79.5 7.9 87 204-332 54-142 (436)
277 KOG2227 Pre-initiation complex 97.4 0.0015 3.3E-08 75.4 12.5 115 631-754 150-281 (529)
278 TIGR01242 26Sp45 26S proteasom 97.3 0.0016 3.5E-08 75.5 12.1 125 204-360 162-294 (364)
279 PF02861 Clp_N: Clp amino term 97.3 0.00027 5.8E-09 58.0 4.0 51 109-168 1-53 (53)
280 KOG0739 AAA+-type ATPase [Post 97.3 0.00046 9.9E-09 75.2 6.7 103 204-331 172-278 (439)
281 KOG0477 DNA replication licens 97.2 0.00038 8.2E-09 82.1 5.7 143 629-779 447-598 (854)
282 PF05729 NACHT: NACHT domain 97.2 0.0027 5.8E-08 63.9 11.2 78 668-745 3-97 (166)
283 COG1223 Predicted ATPase (AAA+ 97.2 0.00081 1.7E-08 72.2 6.9 121 189-351 149-276 (368)
284 TIGR02688 conserved hypothetic 97.1 0.0035 7.5E-08 72.8 12.2 97 668-780 212-313 (449)
285 cd01131 PilT Pilus retraction 97.1 0.0017 3.7E-08 68.8 8.7 89 666-757 2-100 (198)
286 KOG0482 DNA replication licens 97.1 0.0036 7.7E-08 72.6 11.2 120 622-761 333-471 (721)
287 KOG0735 AAA+-type ATPase [Post 97.0 0.002 4.3E-08 77.4 9.0 126 190-353 700-829 (952)
288 KOG0737 AAA+-type ATPase [Post 97.0 0.0034 7.3E-08 70.9 9.9 118 193-357 129-262 (386)
289 COG5271 MDN1 AAA ATPase contai 96.8 0.028 6.1E-07 72.7 16.9 106 668-778 891-1007(4600)
290 KOG0731 AAA+-type ATPase conta 96.8 0.0026 5.6E-08 78.3 8.1 130 203-363 349-486 (774)
291 KOG0726 26S proteasome regulat 96.8 0.0015 3.3E-08 71.0 5.3 118 204-350 225-347 (440)
292 cd01120 RecA-like_NTPases RecA 96.8 0.004 8.6E-08 62.2 8.1 35 668-702 2-36 (165)
293 PRK14974 cell division protein 96.7 0.015 3.3E-07 66.5 13.1 109 666-784 141-269 (336)
294 KOG0727 26S proteasome regulat 96.7 0.0046 9.9E-08 66.1 8.0 107 204-334 195-307 (408)
295 COG0465 HflB ATP-dependent Zn 96.7 0.0032 6.9E-08 76.1 7.4 129 204-363 189-324 (596)
296 TIGR01420 pilT_fam pilus retra 96.7 0.0055 1.2E-07 70.5 8.8 88 667-757 124-221 (343)
297 KOG1970 Checkpoint RAD17-RFC c 96.6 0.031 6.7E-07 66.0 14.7 50 635-690 86-135 (634)
298 COG5271 MDN1 AAA ATPase contai 96.6 0.0099 2.1E-07 76.5 11.1 104 668-777 152-265 (4600)
299 TIGR01425 SRP54_euk signal rec 96.6 0.024 5.3E-07 66.6 13.9 156 618-784 44-229 (429)
300 KOG3347 Predicted nucleotide k 96.6 0.0032 6.9E-08 62.6 5.4 89 668-778 10-102 (176)
301 KOG0481 DNA replication licens 96.6 0.0051 1.1E-07 71.4 7.7 124 623-760 323-459 (729)
302 PF13604 AAA_30: AAA domain; P 96.6 0.0053 1.1E-07 64.9 7.4 88 667-755 20-119 (196)
303 PF03969 AFG1_ATPase: AFG1-lik 96.5 0.0058 1.3E-07 70.6 7.9 102 668-785 65-173 (362)
304 cd01129 PulE-GspE PulE/GspE Th 96.5 0.0092 2E-07 66.1 9.1 88 668-758 83-176 (264)
305 PF08298 AAA_PrkA: PrkA AAA do 96.5 0.0047 1E-07 70.1 6.8 53 631-690 61-113 (358)
306 KOG0652 26S proteasome regulat 96.5 0.0046 1E-07 66.3 6.3 126 204-357 211-341 (424)
307 KOG0732 AAA+-type ATPase conta 96.5 0.0033 7.2E-08 79.4 5.9 120 204-344 305-429 (1080)
308 PRK06581 DNA polymerase III su 96.5 0.036 7.8E-07 59.9 12.7 99 668-778 18-127 (263)
309 PRK00771 signal recognition pa 96.5 0.036 7.8E-07 65.6 14.0 123 620-743 42-189 (437)
310 PRK12723 flagellar biosynthesi 96.4 0.042 9.2E-07 64.0 14.2 108 666-785 175-303 (388)
311 COG1618 Predicted nucleotide k 96.4 0.0079 1.7E-07 60.8 7.1 26 667-692 7-32 (179)
312 PRK13342 recombination factor 96.4 0.013 2.8E-07 69.2 9.8 107 204-357 42-150 (413)
313 PRK12724 flagellar biosynthesi 96.3 0.049 1.1E-06 63.7 13.9 115 665-786 223-351 (432)
314 PRK10536 hypothetical protein; 96.3 0.015 3.3E-07 63.6 9.0 25 730-754 177-201 (262)
315 PRK04296 thymidine kinase; Pro 96.3 0.014 3.1E-07 61.3 8.5 87 667-753 4-102 (190)
316 KOG1514 Origin recognition com 96.3 0.12 2.5E-06 63.0 16.7 129 620-757 380-536 (767)
317 TIGR01618 phage_P_loop phage n 96.2 0.006 1.3E-07 65.6 5.3 75 666-745 13-97 (220)
318 PRK13900 type IV secretion sys 96.2 0.021 4.5E-07 65.4 10.0 85 668-757 163-260 (332)
319 COG3854 SpoIIIAA ncharacterize 96.2 0.016 3.4E-07 61.7 8.1 85 668-757 140-244 (308)
320 PF13207 AAA_17: AAA domain; P 96.2 0.0033 7.1E-08 60.4 3.0 31 667-700 1-31 (121)
321 PHA02774 E1; Provisional 96.2 0.014 3.1E-07 70.1 8.5 95 668-781 437-534 (613)
322 PF00931 NB-ARC: NB-ARC domain 96.1 0.0086 1.9E-07 66.5 6.3 94 637-742 2-114 (287)
323 cd01130 VirB11-like_ATPase Typ 96.1 0.023 5E-07 59.4 9.1 85 668-757 28-125 (186)
324 KOG0479 DNA replication licens 96.1 0.036 7.8E-07 65.6 11.2 147 622-779 292-450 (818)
325 PRK05703 flhF flagellar biosyn 96.1 0.086 1.9E-06 62.4 14.7 155 618-785 176-348 (424)
326 TIGR03499 FlhF flagellar biosy 96.0 0.041 8.9E-07 61.6 11.0 70 619-690 150-219 (282)
327 TIGR02538 type_IV_pilB type IV 96.0 0.02 4.4E-07 70.1 9.2 88 668-758 319-412 (564)
328 TIGR00064 ftsY signal recognit 96.0 0.063 1.4E-06 59.8 12.2 85 620-704 22-111 (272)
329 PF05272 VirE: Virulence-assoc 96.0 0.014 3.1E-07 61.8 6.7 97 662-779 49-149 (198)
330 KOG2028 ATPase related to the 96.0 0.011 2.4E-07 66.4 5.9 87 204-331 168-259 (554)
331 COG2804 PulE Type II secretory 95.9 0.032 6.9E-07 65.9 9.7 90 667-759 260-355 (500)
332 PF00437 T2SE: Type II/IV secr 95.9 0.017 3.8E-07 63.9 7.3 87 668-758 130-223 (270)
333 TIGR02525 plasmid_TraJ plasmid 95.9 0.026 5.6E-07 65.4 8.8 88 668-758 152-252 (372)
334 PRK10867 signal recognition pa 95.9 0.074 1.6E-06 62.9 12.6 90 664-753 99-209 (433)
335 PF05621 TniB: Bacterial TniB 95.8 0.088 1.9E-06 58.9 12.2 127 618-754 24-173 (302)
336 PRK10416 signal recognition pa 95.8 0.18 3.9E-06 57.4 15.0 114 665-785 114-250 (318)
337 PF10923 DUF2791: P-loop Domai 95.8 0.32 6.9E-06 57.1 17.1 61 633-703 27-87 (416)
338 PRK11889 flhF flagellar biosyn 95.8 0.07 1.5E-06 61.9 11.5 87 667-754 243-347 (436)
339 PRK14722 flhF flagellar biosyn 95.8 0.14 3E-06 59.4 14.1 111 666-785 138-263 (374)
340 PRK14700 recombination factor 95.8 0.023 4.9E-07 63.3 7.4 68 888-959 24-91 (300)
341 TIGR02533 type_II_gspE general 95.7 0.028 6.1E-07 67.6 8.7 89 667-758 244-338 (486)
342 PHA00729 NTP-binding motif con 95.7 0.011 2.5E-07 63.5 4.7 23 668-690 20-42 (226)
343 PRK10436 hypothetical protein; 95.7 0.037 8E-07 66.0 9.2 88 668-758 221-314 (462)
344 KOG0729 26S proteasome regulat 95.7 0.028 6E-07 60.7 7.2 118 203-344 216-339 (435)
345 TIGR00959 ffh signal recogniti 95.7 0.15 3.3E-06 60.2 14.1 78 665-742 99-195 (428)
346 PF00448 SRP54: SRP54-type pro 95.6 0.031 6.8E-07 59.1 7.4 107 667-785 3-131 (196)
347 COG1373 Predicted ATPase (AAA+ 95.5 0.05 1.1E-06 63.9 9.6 82 667-758 39-122 (398)
348 KOG0651 26S proteasome regulat 95.5 0.074 1.6E-06 59.0 10.1 125 203-357 171-302 (388)
349 PRK13341 recombination factor 95.5 0.033 7.2E-07 69.9 8.4 108 204-357 58-167 (725)
350 PF13191 AAA_16: AAA ATPase do 95.4 0.0068 1.5E-07 62.4 1.8 62 632-703 1-62 (185)
351 PRK13851 type IV secretion sys 95.4 0.067 1.4E-06 61.5 10.0 85 668-757 165-261 (344)
352 PRK08118 topology modulation p 95.4 0.011 2.3E-07 61.0 3.2 31 668-701 4-34 (167)
353 KOG0728 26S proteasome regulat 95.4 0.055 1.2E-06 58.1 8.2 126 204-357 187-317 (404)
354 TIGR02782 TrbB_P P-type conjug 95.4 0.073 1.6E-06 60.1 9.9 85 668-757 135-229 (299)
355 PF07693 KAP_NTPase: KAP famil 95.4 0.092 2E-06 59.5 10.8 40 666-705 21-63 (325)
356 PRK12726 flagellar biosynthesi 95.3 0.18 3.9E-06 58.3 12.7 88 665-753 206-311 (407)
357 PRK06696 uridine kinase; Valid 95.3 0.028 6.1E-07 60.6 6.1 57 638-704 5-61 (223)
358 PF05496 RuvB_N: Holliday junc 95.3 0.018 4E-07 61.7 4.4 59 204-282 56-116 (233)
359 TIGR02524 dot_icm_DotB Dot/Icm 95.3 0.053 1.1E-06 62.7 8.6 88 668-758 137-239 (358)
360 PF03266 NTPase_1: NTPase; In 95.3 0.014 3E-07 60.2 3.5 22 668-689 2-23 (168)
361 TIGR02788 VirB11 P-type DNA tr 95.3 0.054 1.2E-06 61.4 8.5 85 668-757 147-243 (308)
362 PRK13894 conjugal transfer ATP 95.2 0.067 1.4E-06 60.9 9.1 85 668-757 151-244 (319)
363 cd01124 KaiC KaiC is a circadi 95.2 0.03 6.5E-07 58.0 5.6 33 668-700 2-34 (187)
364 COG4178 ABC-type uncharacteriz 95.2 0.053 1.2E-06 65.8 8.2 33 722-755 527-560 (604)
365 COG0529 CysC Adenylylsulfate k 95.1 0.054 1.2E-06 55.7 6.8 90 667-759 25-123 (197)
366 PRK00131 aroK shikimate kinase 95.0 0.02 4.4E-07 58.4 3.7 31 667-700 6-36 (175)
367 PHA01747 putative ATP-dependen 95.0 0.083 1.8E-06 60.1 8.7 102 665-784 190-305 (425)
368 PF13671 AAA_33: AAA domain; P 95.0 0.012 2.6E-07 58.1 2.0 24 667-690 1-24 (143)
369 PRK12727 flagellar biosynthesi 95.0 0.38 8.2E-06 58.0 14.6 80 665-744 350-443 (559)
370 COG1485 Predicted ATPase [Gene 95.0 0.11 2.4E-06 58.8 9.6 103 668-785 68-176 (367)
371 PRK13833 conjugal transfer pro 94.9 0.12 2.7E-06 58.8 10.0 85 668-757 147-240 (323)
372 PRK13947 shikimate kinase; Pro 94.9 0.023 4.9E-07 58.2 3.6 32 667-701 3-34 (171)
373 PRK03839 putative kinase; Prov 94.8 0.021 4.5E-07 59.3 3.2 30 668-700 3-32 (180)
374 PHA02624 large T antigen; Prov 94.7 0.058 1.3E-06 65.3 6.9 57 667-740 433-489 (647)
375 cd03115 SRP The signal recogni 94.6 0.12 2.6E-06 53.1 8.3 38 667-704 2-39 (173)
376 cd01121 Sms Sms (bacterial rad 94.6 0.11 2.4E-06 60.5 8.8 75 667-741 84-170 (372)
377 PF09848 DUF2075: Uncharacteri 94.6 0.063 1.4E-06 62.0 6.8 91 667-757 3-119 (352)
378 PRK07261 topology modulation p 94.6 0.028 6E-07 58.1 3.4 31 668-701 3-33 (171)
379 PRK06995 flhF flagellar biosyn 94.6 0.47 1E-05 56.9 14.1 79 666-744 257-349 (484)
380 PRK05800 cobU adenosylcobinami 94.5 0.12 2.5E-06 53.6 7.8 70 667-739 3-86 (170)
381 KOG1808 AAA ATPase containing 94.5 0.12 2.6E-06 69.4 9.6 89 668-763 443-542 (1856)
382 cd03216 ABC_Carb_Monos_I This 94.5 0.11 2.4E-06 53.1 7.6 87 667-755 28-127 (163)
383 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.5 0.14 2.9E-06 51.4 8.0 82 667-755 28-115 (144)
384 PLN03210 Resistant to P. syrin 94.4 0.31 6.7E-06 65.1 13.5 50 631-691 184-233 (1153)
385 PRK06067 flagellar accessory p 94.4 0.088 1.9E-06 57.0 6.9 35 667-701 27-61 (234)
386 PF05970 PIF1: PIF1-like helic 94.4 0.065 1.4E-06 62.2 6.2 126 636-778 6-149 (364)
387 PRK00625 shikimate kinase; Pro 94.4 0.034 7.3E-07 57.7 3.4 30 668-700 3-32 (173)
388 PRK06217 hypothetical protein; 94.3 0.033 7.2E-07 58.0 3.4 30 668-700 4-33 (183)
389 PRK08154 anaerobic benzoate ca 94.3 0.077 1.7E-06 60.2 6.4 30 668-700 136-165 (309)
390 TIGR03819 heli_sec_ATPase heli 94.3 0.21 4.5E-06 57.5 9.9 86 668-757 181-278 (340)
391 cd00227 CPT Chloramphenicol (C 94.2 0.034 7.3E-07 57.5 3.2 33 667-702 4-36 (175)
392 KOG0922 DEAH-box RNA helicase 94.2 0.13 2.7E-06 62.3 8.2 50 728-787 162-213 (674)
393 cd03283 ABC_MutS-like MutS-lik 94.2 0.17 3.8E-06 53.6 8.6 23 667-689 27-49 (199)
394 COG1219 ClpX ATP-dependent pro 94.2 0.1 2.2E-06 58.2 6.8 94 190-304 96-194 (408)
395 COG0703 AroK Shikimate kinase 94.2 0.033 7.1E-07 57.4 2.9 31 667-700 4-34 (172)
396 PF13238 AAA_18: AAA domain; P 94.2 0.032 6.9E-07 53.7 2.7 22 668-689 1-22 (129)
397 PF13479 AAA_24: AAA domain 94.2 0.071 1.5E-06 57.1 5.5 72 668-745 6-84 (213)
398 cd02020 CMPK Cytidine monophos 94.1 0.039 8.5E-07 54.6 3.3 30 668-700 2-31 (147)
399 PF06048 DUF927: Domain of unk 94.1 0.21 4.6E-06 56.0 9.5 115 622-757 156-270 (286)
400 cd00464 SK Shikimate kinase (S 94.1 0.042 9.2E-07 54.9 3.5 30 668-700 2-31 (154)
401 TIGR01359 UMP_CMP_kin_fam UMP- 94.0 0.041 8.9E-07 57.0 3.3 31 668-703 2-32 (183)
402 cd02019 NK Nucleoside/nucleoti 94.0 0.054 1.2E-06 47.2 3.6 22 668-689 2-23 (69)
403 cd02021 GntK Gluconate kinase 94.0 0.039 8.4E-07 55.2 3.0 22 668-689 2-23 (150)
404 TIGR01313 therm_gnt_kin carboh 94.0 0.035 7.6E-07 56.4 2.7 23 668-690 1-23 (163)
405 COG1643 HrpA HrpA-like helicas 94.0 0.093 2E-06 66.4 6.8 111 668-787 68-213 (845)
406 PF12780 AAA_8: P-loop contain 94.0 0.25 5.4E-06 55.0 9.4 107 633-760 10-120 (268)
407 PRK13949 shikimate kinase; Pro 93.9 0.044 9.5E-07 56.6 3.2 30 668-700 4-33 (169)
408 PF01443 Viral_helicase1: Vira 93.9 0.095 2.1E-06 56.3 5.9 84 668-753 1-86 (234)
409 PRK11823 DNA repair protein Ra 93.8 0.16 3.4E-06 60.7 8.1 75 667-741 82-168 (446)
410 PRK13764 ATPase; Provisional 93.8 0.19 4.2E-06 61.6 9.0 78 668-749 260-342 (602)
411 COG2805 PilT Tfp pilus assembl 93.8 0.095 2.1E-06 58.1 5.6 89 668-759 128-226 (353)
412 COG1116 TauB ABC-type nitrate/ 93.7 0.21 4.6E-06 54.2 8.1 27 666-692 30-56 (248)
413 PRK05541 adenylylsulfate kinas 93.7 0.059 1.3E-06 55.6 3.8 36 666-701 8-43 (176)
414 KOG0742 AAA+-type ATPase [Post 93.6 0.32 7E-06 55.8 9.5 108 191-331 384-494 (630)
415 PRK14532 adenylate kinase; Pro 93.6 0.054 1.2E-06 56.5 3.3 30 668-702 3-32 (188)
416 PRK00411 cdc6 cell division co 93.6 0.36 7.9E-06 56.3 10.6 122 204-357 61-206 (394)
417 TIGR02858 spore_III_AA stage I 93.6 0.18 3.8E-06 56.2 7.5 85 668-754 114-217 (270)
418 cd00267 ABC_ATPase ABC (ATP-bi 93.5 0.22 4.7E-06 50.4 7.5 87 667-755 27-125 (157)
419 cd03222 ABC_RNaseL_inhibitor T 93.5 0.16 3.5E-06 52.9 6.6 87 666-755 26-116 (177)
420 PTZ00112 origin recognition co 93.5 0.23 5.1E-06 62.3 8.8 120 203-351 786-927 (1164)
421 TIGR02237 recomb_radB DNA repa 93.4 0.11 2.4E-06 55.0 5.4 38 666-703 13-50 (209)
422 COG0563 Adk Adenylate kinase a 93.4 0.057 1.2E-06 56.3 3.0 30 668-702 3-32 (178)
423 PF01583 APS_kinase: Adenylyls 93.4 0.057 1.2E-06 55.0 2.9 91 666-759 3-102 (156)
424 PF05673 DUF815: Protein of un 93.4 0.28 6E-06 53.4 8.3 62 191-277 52-116 (249)
425 COG2255 RuvB Holliday junction 93.4 0.059 1.3E-06 59.2 3.1 63 193-282 54-118 (332)
426 PRK14530 adenylate kinase; Pro 93.3 0.064 1.4E-06 57.4 3.4 23 668-690 6-28 (215)
427 COG1419 FlhF Flagellar GTP-bin 93.3 0.11 2.3E-06 60.2 5.3 87 667-755 205-309 (407)
428 cd00009 AAA The AAA+ (ATPases 93.3 0.28 6E-06 47.3 7.6 98 204-333 25-131 (151)
429 PRK13948 shikimate kinase; Pro 93.3 0.082 1.8E-06 55.3 4.0 31 667-700 12-42 (182)
430 KOG1968 Replication factor C, 93.3 0.23 5E-06 63.2 8.6 96 667-778 359-467 (871)
431 PRK08233 hypothetical protein; 93.3 0.086 1.9E-06 54.3 4.1 35 666-702 4-38 (182)
432 TIGR01448 recD_rel helicase, p 93.2 0.15 3.3E-06 64.4 6.9 87 668-754 341-441 (720)
433 PRK06762 hypothetical protein; 93.2 0.059 1.3E-06 54.9 2.8 24 666-689 3-26 (166)
434 cd02027 APSK Adenosine 5'-phos 93.2 0.074 1.6E-06 53.6 3.5 34 668-701 2-35 (149)
435 COG1102 Cmk Cytidylate kinase 93.1 0.082 1.8E-06 53.6 3.5 24 667-690 2-25 (179)
436 PRK03731 aroL shikimate kinase 93.1 0.083 1.8E-06 54.1 3.7 30 668-700 5-34 (171)
437 COG1124 DppF ABC-type dipeptid 93.1 0.3 6.5E-06 52.9 7.8 34 667-701 35-68 (252)
438 PRK06547 hypothetical protein; 93.1 0.084 1.8E-06 54.7 3.7 24 667-690 17-40 (172)
439 PRK00889 adenylylsulfate kinas 93.0 0.099 2.1E-06 53.9 4.1 36 667-702 6-41 (175)
440 cd01428 ADK Adenylate kinase ( 93.0 0.076 1.6E-06 55.4 3.3 23 668-690 2-24 (194)
441 TIGR00763 lon ATP-dependent pr 93.0 0.2 4.3E-06 64.0 7.7 114 204-357 353-491 (775)
442 TIGR00554 panK_bact pantothena 93.0 0.29 6.2E-06 55.0 8.1 25 666-690 63-87 (290)
443 PRK14723 flhF flagellar biosyn 93.0 0.82 1.8E-05 57.5 12.7 121 620-743 142-277 (767)
444 PRK05480 uridine/cytidine kina 93.0 0.091 2E-06 55.8 3.9 25 666-690 7-31 (209)
445 TIGR02640 gas_vesic_GvpN gas v 93.0 0.17 3.8E-06 55.9 6.2 36 322-360 151-186 (262)
446 PRK08533 flagellar accessory p 92.9 0.37 7.9E-06 52.4 8.5 34 667-700 26-59 (230)
447 PRK05057 aroK shikimate kinase 92.9 0.085 1.8E-06 54.6 3.4 31 668-701 7-37 (172)
448 PTZ00088 adenylate kinase 1; P 92.9 0.085 1.8E-06 57.3 3.5 23 668-690 9-31 (229)
449 PRK02496 adk adenylate kinase; 92.9 0.079 1.7E-06 55.1 3.1 24 667-690 3-26 (184)
450 TIGR02928 orc1/cdc6 family rep 92.8 0.48 1E-05 54.7 9.9 125 204-357 46-198 (365)
451 cd02023 UMPK Uridine monophosp 92.8 0.086 1.9E-06 55.5 3.4 23 668-690 2-24 (198)
452 PRK14531 adenylate kinase; Pro 92.8 0.09 2E-06 54.8 3.5 23 668-690 5-27 (183)
453 cd03223 ABCD_peroxisomal_ALDP 92.7 0.64 1.4E-05 47.7 9.6 87 667-755 29-136 (166)
454 COG3267 ExeA Type II secretory 92.7 0.34 7.3E-06 52.8 7.6 86 668-753 54-155 (269)
455 TIGR00150 HI0065_YjeE ATPase, 92.7 0.18 3.9E-06 50.0 5.2 24 667-690 24-47 (133)
456 cd03230 ABC_DR_subfamily_A Thi 92.7 0.27 5.9E-06 50.7 6.8 87 667-755 28-140 (173)
457 PRK13946 shikimate kinase; Pro 92.6 0.09 1.9E-06 54.9 3.2 30 668-700 13-42 (184)
458 PRK14721 flhF flagellar biosyn 92.6 2.1 4.6E-05 50.6 14.7 24 666-689 192-215 (420)
459 cd03243 ABC_MutS_homologs The 92.6 0.48 1E-05 50.1 8.7 23 667-689 31-53 (202)
460 PRK15177 Vi polysaccharide exp 92.5 0.48 1E-05 50.7 8.7 26 667-692 15-40 (213)
461 cd03238 ABC_UvrA The excision 92.5 0.31 6.7E-06 50.8 7.0 35 720-755 97-134 (176)
462 TIGR01613 primase_Cterm phage/ 92.5 0.6 1.3E-05 52.8 9.8 130 629-779 47-181 (304)
463 KOG0745 Putative ATP-dependent 92.5 0.23 5E-06 57.4 6.3 76 190-282 225-306 (564)
464 TIGR02322 phosphon_PhnN phosph 92.5 0.087 1.9E-06 54.4 2.8 24 667-690 3-26 (179)
465 cd03246 ABCC_Protease_Secretio 92.4 0.5 1.1E-05 48.7 8.4 87 667-755 30-141 (173)
466 cd00544 CobU Adenosylcobinamid 92.4 0.29 6.3E-06 50.6 6.6 21 668-688 2-22 (169)
467 TIGR03574 selen_PSTK L-seryl-t 92.4 0.099 2.1E-06 57.3 3.3 34 668-701 2-35 (249)
468 TIGR00635 ruvB Holliday juncti 92.4 0.23 5E-06 55.9 6.4 59 204-282 36-96 (305)
469 PF01745 IPT: Isopentenyl tran 92.4 0.11 2.4E-06 55.1 3.4 32 667-701 3-34 (233)
470 cd02028 UMPK_like Uridine mono 92.4 0.097 2.1E-06 54.5 3.0 37 668-704 2-38 (179)
471 PRK05342 clpX ATP-dependent pr 92.3 0.21 4.5E-06 58.9 6.0 72 191-283 108-189 (412)
472 PRK05439 pantothenate kinase; 92.2 0.37 8E-06 54.6 7.7 39 666-704 87-127 (311)
473 TIGR00235 udk uridine kinase. 92.2 0.13 2.8E-06 54.8 3.7 26 666-691 7-32 (207)
474 COG4088 Predicted nucleotide k 92.2 0.1 2.3E-06 54.8 2.9 25 668-692 4-28 (261)
475 PRK09376 rho transcription ter 92.1 0.88 1.9E-05 53.0 10.5 116 203-329 174-317 (416)
476 PF02562 PhoH: PhoH-like prote 92.1 0.55 1.2E-05 50.1 8.3 23 668-690 22-44 (205)
477 TIGR01360 aden_kin_iso1 adenyl 92.1 0.1 2.2E-06 54.0 2.9 24 667-690 5-28 (188)
478 PRK14528 adenylate kinase; Pro 91.9 0.14 3.1E-06 53.6 3.6 23 668-690 4-26 (186)
479 PF00485 PRK: Phosphoribulokin 91.9 0.15 3.3E-06 53.6 3.9 26 667-692 1-26 (194)
480 PRK03846 adenylylsulfate kinas 91.7 0.16 3.5E-06 53.7 3.8 36 667-702 26-61 (198)
481 cd03228 ABCC_MRP_Like The MRP 91.7 0.39 8.5E-06 49.4 6.6 88 666-755 29-141 (171)
482 PRK07667 uridine kinase; Provi 91.6 0.17 3.7E-06 53.3 3.9 38 667-704 19-56 (193)
483 PRK09270 nucleoside triphospha 91.6 0.34 7.4E-06 52.4 6.3 28 666-693 34-61 (229)
484 TIGR01351 adk adenylate kinase 91.6 0.14 3E-06 54.6 3.1 23 668-690 2-24 (210)
485 PF13245 AAA_19: Part of AAA d 91.5 0.16 3.4E-06 45.4 3.0 22 668-689 13-35 (76)
486 PRK12608 transcription termina 91.5 0.38 8.2E-06 55.7 6.7 96 668-776 136-280 (380)
487 PF13337 Lon_2: Putative ATP-d 91.4 0.28 6E-06 57.7 5.6 93 668-780 211-311 (457)
488 TIGR01447 recD exodeoxyribonuc 91.4 0.32 6.9E-06 59.9 6.5 26 729-754 259-284 (586)
489 PRK00279 adk adenylate kinase; 91.4 0.16 3.6E-06 54.2 3.5 23 668-690 3-25 (215)
490 COG4608 AppF ABC-type oligopep 91.4 0.45 9.8E-06 52.4 6.9 86 668-755 42-154 (268)
491 TIGR00750 lao LAO/AO transport 91.4 0.49 1.1E-05 53.5 7.5 26 667-692 36-61 (300)
492 PRK06731 flhF flagellar biosyn 91.3 0.59 1.3E-05 52.0 7.8 87 667-754 77-181 (270)
493 cd03247 ABCC_cytochrome_bd The 91.2 0.71 1.5E-05 47.7 8.0 86 667-755 30-143 (178)
494 PF05707 Zot: Zonular occluden 91.2 0.29 6.3E-06 51.6 5.1 19 667-685 2-20 (193)
495 PRK04182 cytidylate kinase; Pr 91.2 0.14 3E-06 52.5 2.7 24 667-690 2-25 (180)
496 PRK00300 gmk guanylate kinase; 91.2 0.15 3.3E-06 53.8 3.0 24 666-689 6-29 (205)
497 PLN02165 adenylate isopentenyl 91.2 0.18 3.9E-06 57.4 3.7 31 667-700 45-75 (334)
498 PRK10078 ribose 1,5-bisphospho 91.1 0.15 3.3E-06 53.2 2.9 24 667-690 4-27 (186)
499 cd02025 PanK Pantothenate kina 91.1 0.19 4.1E-06 54.2 3.7 36 668-703 2-39 (220)
500 PLN02199 shikimate kinase 91.1 0.28 6.2E-06 54.9 5.1 30 668-700 105-134 (303)
No 1
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-123 Score=1109.09 Aligned_cols=698 Identities=22% Similarity=0.280 Sum_probs=592.6
Q ss_pred hccHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHcCCCChHHHHHHHHcCCCCCchhhHHHHHHHHHHHhcccCCccCCC
Q 001788 11 TLTPEAASVLNHSIAEASRRNHGQTTPLHVAATLLASPSGYLRQACIKSHPNSSHPLQCRALELCFSVALERLPTAQQNV 90 (1013)
Q Consensus 11 ~~T~~a~~aL~~A~~~A~~~~h~~itp~HLL~aLL~~~~gl~~~~l~~~~~d~~~~~~~~~Le~~~~~~L~r~p~~~~~~ 90 (1013)
+||++++++|..|+++|++++|.+++|+|||++|+.++.|. .++..++++ ...|+..+...+.+.|...+
T Consensus 1 ~~~~~~~~~l~~a~~~a~~~~h~~~~~eHll~~ll~~~~~~--~~l~~~~~~------~~~l~~~~~~~~~~~~~~~~-- 70 (786)
T COG0542 1 KLTERAQKALELAQELARMRRHEYVTPEHLLLALLDQPKGD--ELLNLCGID------LDKLRQELEEFIDKLPKVLG-- 70 (786)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHcCCchH--HHHHHcCCC------HHHHHHHHHHHHhccCCCCC--
Confidence 59999999999999999999999999999999999999997 788888988 58888999999999998763
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCCCchhhccchHHHHHHhccCCc--hHHHHHhcCCChHHHHHHHHHhhc
Q 001788 91 SPGLDPPISNALMAALKRAQAHQRRGCPEQQQQPLLAVKVELEQLIISILDDPS--VSRVMREASFSSPAVKATIEQSLN 168 (1013)
Q Consensus 91 ~~~~~p~~S~~l~~vL~~A~~~a~~g~~e~~~~~~i~~kVe~ehLllaLl~d~~--~s~iL~~~g~~~~~ik~~i~~~~~ 168 (1013)
. +.+|+.+..+++.|+.+++. .+++||++ +|||+|++.++. ..++|...|++...++..+..+++
T Consensus 71 ---~-~~~s~~~~~~~~~a~~~a~~-----~~~~~v~~----~~llla~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 137 (786)
T COG0542 71 ---S-PYLSPRLKRVLERAWLLAQS-----LGDEYVST----EHLLLALLNEPESVAAYILKKLGVTRKDVEELIEELRG 137 (786)
T ss_pred ---C-CCCCHHHHHHHHHHHHHHHh-----ccCccccH----HHHHHHHhcccchHHHHHHHhccCCHHHHHHHHHHHhc
Confidence 2 78899999999999999986 67899886 999999998875 379999999999989888888776
Q ss_pred CCC-CCCCC-------C---------CCCCCCCC--------------CCCCcCCCcccccCCCcccCCC--hhHHHHHH
Q 001788 169 SSC-SVSNS-------S---------PIGLGFRP--------------SSRNLYMNPRLQQAGGVCGGQS--EPEMVVRE 215 (1013)
Q Consensus 169 ~~~-~~~~~-------~---------~~~g~~~p--------------~~r~~~~np~l~~~~~~~vG~~--gkta~v~~ 215 (1013)
... .+.++ . +-.|++|| |+||+||||+| |||| ||||||+|
T Consensus 138 ~~~~~~~~~~~~~~~L~~y~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNPvL-------iGEpGVGKTAIvEG 210 (786)
T COG0542 138 GNEVDSKNAEEDQDALEKYTRDLTELAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVL-------VGEPGVGKTAIVEG 210 (786)
T ss_pred ccccCCcccccchhhHHHHhhhhHHHHhcCCCCCCcChHHHHHHHHHHHhccCCCCCeE-------ecCCCCCHHHHHHH
Confidence 421 11110 0 11499999 89999999999 9999 99999999
Q ss_pred HHHHHHhcCCcccccCcEEEEeccc--ccc--chhhhHHHHHHHHHHHHhhcCCCCceEEEecchhHHHhcccccCCCCC
Q 001788 216 SLAKIESKELDGVLKNVQIIRLDKD--FTC--DKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKWLVEQQVTSFGVPN 291 (1013)
Q Consensus 216 la~~i~~~~vp~~L~~~~~~~l~~~--~~~--~rge~e~r~~~l~~~~~~~~~~~~~~il~idel~~l~~~~~~~~g~~~ 291 (1013)
||+||++|+||+.|+++++++||++ +|| ||||||+|||.|++++++. +++||||||||++||+|++. |
T Consensus 211 LA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~----~~vILFIDEiHtiVGAG~~~-G--- 282 (786)
T COG0542 211 LAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKS----KNVILFIDEIHTIVGAGATE-G--- 282 (786)
T ss_pred HHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcC----CCeEEEEechhhhcCCCccc-c---
Confidence 9999999999999999999999999 476 9999999999999999994 59999999999999998641 1
Q ss_pred CCcchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEecCHHHHHHhhhcCCCCCCCCCCeeeeccCCCCCC-------CC
Q 001788 292 SGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATCETYLRCQVYHPSMENDWDLQAVPIAAKTPLS-------GM 364 (1013)
Q Consensus 292 ~~~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~IgatT~~~Y~k~~~~~~ale~~~rfq~v~v~e~~~~~-------gl 364 (1013)
+++ |++|||||+| +||+|+||||||++||+|||+||+|| +||||+|.|.| |+.+ |+
T Consensus 283 ---------~a~----DAaNiLKPaL-ARGeL~~IGATT~~EYRk~iEKD~AL--~RRFQ~V~V~E-Ps~e~ti~ILrGl 345 (786)
T COG0542 283 ---------GAM----DAANLLKPAL-ARGELRCIGATTLDEYRKYIEKDAAL--ERRFQKVLVDE-PSVEDTIAILRGL 345 (786)
T ss_pred ---------ccc----chhhhhHHHH-hcCCeEEEEeccHHHHHHHhhhchHH--HhcCceeeCCC-CCHHHHHHHHHHH
Confidence 134 8999999999 89999999999999999999999999 99999999999 9988 99
Q ss_pred cccccc-CC--CCchhhhhhccccccchhccccCCCCCCCcCc---hhhhhhh----hHHHHHHHHHHHHHHhhhhhhcc
Q 001788 365 FPRLGS-NG--ILSSSVESLSPLKSAFQTTAAALPRRVSENLD---PARRMSC----CRQCLQNYEQELAKLSKEFEKSS 434 (1013)
Q Consensus 365 ~~~~e~-h~--i~d~al~~~v~~~~~~~~~~~~~r~~pd~aid---~a~~~~~----~~~~~~~~e~e~~~l~~~~~~~~ 434 (1013)
+++||. |+ |+|+|+++++ .+|+||++ +|+||||||| +||+... .|..++.+++++.+++.|.++..
T Consensus 346 k~~yE~hH~V~i~D~Al~aAv---~LS~RYI~-dR~LPDKAIDLiDeA~a~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~ 421 (786)
T COG0542 346 KERYEAHHGVRITDEALVAAV---TLSDRYIP-DRFLPDKAIDLLDEAGARVRLEIDKPEELDELERELAQLEIEKEALE 421 (786)
T ss_pred HHHHHHccCceecHHHHHHHH---HHHHhhcc-cCCCCchHHHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHh
Confidence 999999 77 7999999999 99999999 8999999976 5555411 47778888888888876554321
Q ss_pred cchhhhhccCCchHHHhhhccCCCCcchhhhccchhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCcccccCCCCcc
Q 001788 435 SEVKSEVARPLLPQWLHNAKAHDGDDKTAEQTENKDQDLIWKQKSQELQKKWNDTCLNQHPNFHPSSLGHERIVPVPLSM 514 (1013)
Q Consensus 435 ~~~~~~~~~~~lp~wlq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kw~~~c~~lh~~~~~~~~~~~~~~~~~~s~ 514 (1013)
.. + .+....+..++..+++ ..
T Consensus 422 ~e-----------------~--------------~~~~k~~~~~~~~~~~------~~---------------------- 442 (786)
T COG0542 422 RE-----------------Q--------------DEKEKKLIDEIIKLKE------GR---------------------- 442 (786)
T ss_pred hh-----------------h--------------hHHHHHHHHHHHHHhh------hh----------------------
Confidence 10 0 0001111111222221 00
Q ss_pred cccccccccccCCCCchhhccccccccccccCCCCCCcchhhccCCCCCCceeccccCcccccCCCCCcCCccccccccc
Q 001788 515 TGLYNSNLLARQPFQPKVQLNRNLGDTLQLNSNMVSSQPAERAVSPLNSPVRTDLVLGRSKVLESAPEKTHIEPVKDFLG 594 (1013)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~tdl~lg~~~~s~~~~~~~~~~~i~~~~s 594 (1013)
++.++..++ . .|+.++|+++++
T Consensus 443 --------------------------------~~~~~~~~~-------------------------~-~v~~~~Ia~vv~ 464 (786)
T COG0542 443 --------------------------------IPELEKELE-------------------------A-EVDEDDIAEVVA 464 (786)
T ss_pred --------------------------------hhhHHHHHh-------------------------h-ccCHHHHHHHHH
Confidence 000111110 0 135678999999
Q ss_pred cccCCCCCCcccccccccCCCCCCHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhhhcC-CCCCCCCCCCceEEEecc
Q 001788 595 CISSEPPQNKLHESQNDQLQKPLDPDSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLGNG-KRRGAGSKGDMWLLFMGP 673 (1013)
Q Consensus 595 ~~t~~p~~~~~~~~~~~~~~~~~d~e~l~~L~~~L~~~ViGQ~~ai~~I~~ai~~~~~g~~-~~r~~~sk~~~~lLf~Gp 673 (1013)
+|||||++++++ .+.+++..|++.|.++|+||++||..|+.+|++.++|+. +++|+++ |||.||
T Consensus 465 ~~TgIPv~~l~~----------~e~~kll~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigs-----FlF~GP 529 (786)
T COG0542 465 RWTGIPVAKLLE----------DEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGS-----FLFLGP 529 (786)
T ss_pred HHHCCChhhhch----------hhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceE-----EEeeCC
Confidence 999999999987 699999999999999999999999999999999999985 7788876 999999
Q ss_pred CCCccchHHHHHHHHhcCCCCceeeeCCCCCCC--------CCcccccccchhhhHHHHHHcCCCEEEEEeCCCCCCHHH
Q 001788 674 DRVGKKKMASALSELVSGASPIMIPLGPRRDHE--------EPEVRVRGKTALDKIGEAVKRNPFSVILLEDIDEADMVV 745 (1013)
Q Consensus 674 ~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~--------~~~~g~~G~~~~~~L~eal~~~p~~VV~lDEIdka~~~v 745 (1013)
||||||++|++||+.||+++..+++||||+|++ |+||||+||+++|.|+++++++||+||+|||||||||+|
T Consensus 530 TGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV 609 (786)
T COG0542 530 TGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDV 609 (786)
T ss_pred CcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHH
Confidence 999999999999999999999999999999986 789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchh
Q 001788 746 RGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLD 825 (1013)
Q Consensus 746 q~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~ 825 (1013)
+|.|||+|++|+++|+.|++|||+|+|||||||+|++.+.....+..+
T Consensus 610 ~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~-------------------------------- 657 (786)
T COG0542 610 FNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDF-------------------------------- 657 (786)
T ss_pred HHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhcccccc--------------------------------
Confidence 999999999999999999999999999999999998766542100000
Q ss_pred hhhhccccccccCCCcccchhhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCC
Q 001788 826 EEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVD 905 (1013)
Q Consensus 826 ~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~ 905 (1013)
...+..++ .+ ...+. +.|+|||+||||++|+|+||+
T Consensus 658 ---~~~~~~~~-------~v--------------------------~~~l~--------~~F~PEFLNRid~II~F~~L~ 693 (786)
T COG0542 658 ---ADKEALKE-------AV--------------------------MEELK--------KHFRPEFLNRIDEIIPFNPLS 693 (786)
T ss_pred ---chhhhHHH-------HH--------------------------HHHHH--------hhCCHHHHhhcccEEeccCCC
Confidence 00000110 00 01121 289999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHHHhCCC---CChHHHHHHHHHHHhHHHHHHHHcCCCCC
Q 001788 906 FGRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLVGGVW---LGRTGLEDWTEKVLVPSLHQLKLRLPNNA 975 (1013)
Q Consensus 906 ~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~~~~~---~gar~l~~~ie~~l~~~l~~~~~~~~~~~ 975 (1013)
.+++.+|+..+|.++..++..+++.|++++++.+||++.+| +|+|+|++.|++.+.++|++.++.....+
T Consensus 694 ~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~iL~g~~~~ 766 (786)
T COG0542 694 KEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADEILFGKIED 766 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 99999999999999999999889999999999999999998 79999999999999999999999987774
No 2
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-120 Score=1089.77 Aligned_cols=792 Identities=35% Similarity=0.494 Sum_probs=630.9
Q ss_pred CCCccchhhhhccHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHcCCCChHHHHHHHHcCCCCCchhhHHHHHHHHHHHh
Q 001788 1 MRAGLSTIQQTLTPEAASVLNHSIAEASRRNHGQTTPLHVAATLLASPSGYLRQACIKSHPNSSHPLQCRALELCFSVAL 80 (1013)
Q Consensus 1 m~~~~~~~~~~~T~~a~~aL~~A~~~A~~~~h~~itp~HLL~aLL~~~~gl~~~~l~~~~~d~~~~~~~~~Le~~~~~~L 80 (1013)
||||++|++|+||++|+.+|..|+.+|+++||+|+||+|++.+||+.|+|+++++|.+++ |+||++|+.|++++|
T Consensus 1 m~t~~~t~~q~lT~~Aa~~L~~a~~~Arrrgh~qvtplH~~~~LLs~~t~~lr~ac~~~~-----~l~~ralelc~~v~l 75 (898)
T KOG1051|consen 1 MRTGVYTVQQTLTEEAATVLKQAVTEARRRGHAQVTPLHVASTLLSSPTGILRRACIKSH-----PLQCRALELCFNVSL 75 (898)
T ss_pred CCCcccchHhhhCHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHcCCchHHHHHHHhcC-----cccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999864 578999999999999
Q ss_pred cccCCccCCCCCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCCCchhhccchHHHHHHhccCCchHHHHHhcCCChHHHH
Q 001788 81 ERLPTAQQNVSPGLDPPISNALMAALKRAQAHQRRGCPEQQQQPLLAVKVELEQLIISILDDPSVSRVMREASFSSPAVK 160 (1013)
Q Consensus 81 ~r~p~~~~~~~~~~~p~~S~~l~~vL~~A~~~a~~g~~e~~~~~~i~~kVe~ehLllaLl~d~~~s~iL~~~g~~~~~ik 160 (1013)
+|+|++. .|+.++.+.++|++++++|+|||.+ ++++|| |||++.|+++|++||+++|+|+++||++.+||
T Consensus 76 ~rlpt~~-------~p~~sn~l~aalkr~qa~qrr~~~~-~~~~~v--kvE~~~li~silDdp~vsrv~reag~~s~~vK 145 (898)
T KOG1051|consen 76 NRLPTSY-------GPPVSNALMAALKRAQAHQRRGCEE-QQQQAV--KVELEQLILSILDDPSVSRVMREAGFSSSAVK 145 (898)
T ss_pred HhccCCC-------CCccchHhHHHHHHHHHHHHhcchh-hccchh--hHhHHhhheeeecCchHHHHHHHhcCChHHHH
Confidence 9999875 3789999999999999999999988 455565 68999999999999999999999999999999
Q ss_pred HHHHHhhcC-CCCCCCC--------------CC--CCCCCCC---------------CCCCcCCCcccccCCCcccCCC-
Q 001788 161 ATIEQSLNS-SCSVSNS--------------SP--IGLGFRP---------------SSRNLYMNPRLQQAGGVCGGQS- 207 (1013)
Q Consensus 161 ~~i~~~~~~-~~~~~~~--------------~~--~~g~~~p---------------~~r~~~~np~l~~~~~~~vG~~- 207 (1013)
..|++.++. +.++.++ ++ ..|++|| |+|++||||+| ||+|
T Consensus 146 ~~ve~~~g~~~~~~~~~~~~~~~L~~~~~dl~p~a~~gkldPvigr~deeirRvi~iL~Rrtk~NPvL-------VG~~g 218 (898)
T KOG1051|consen 146 SAVEQPVGQFRSPSRGPLWPLLFLENYGTDLTPRARQGKLDPVIGRHDEEIRRVIEILSRKTKNNPVL-------VGEPG 218 (898)
T ss_pred HHHHhhccccCCCCcCCccchhHHHhcccccChhhhccCCCCccCCchHHHHHHHHHHhccCCCCceE-------EecCC
Confidence 999998753 1111111 11 1277788 78899999999 9999
Q ss_pred -hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc--ccc--chhhhHHHHHHHHHHHHhhcCCCCceEEEecchhHHHhc
Q 001788 208 -EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD--FTC--DKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKWLVEQ 282 (1013)
Q Consensus 208 -gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~--~~~--~rge~e~r~~~l~~~~~~~~~~~~~~il~idel~~l~~~ 282 (1013)
|||++|+++|+||++|+||..|.+++++.|+++ ++| +|||||.|+++|+++|++. ++|||||||||||++++
T Consensus 219 vgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~---~~gvILfigelh~lvg~ 295 (898)
T KOG1051|consen 219 VGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESG---GGGVILFLGELHWLVGS 295 (898)
T ss_pred CCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcC---CCcEEEEecceeeeecC
Confidence 999999999999999999999999999999999 355 9999999999999999973 89999999999999999
Q ss_pred ccccCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEecCHHHHHHhhhcCCCCCCCCCCeeeeccCCCCCC
Q 001788 283 QVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATCETYLRCQVYHPSMENDWDLQAVPIAAKTPLS 362 (1013)
Q Consensus 283 ~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~IgatT~~~Y~k~~~~~~ale~~~rfq~v~v~e~~~~~ 362 (1013)
+.+ | |++ +++|+|||.+ ++|.||||||||++||+|||++||+| +||||++.|++ |+.+
T Consensus 296 g~~-------------~-~~~----d~~nlLkp~L-~rg~l~~IGatT~e~Y~k~iekdPal--Errw~l~~v~~-pS~~ 353 (898)
T KOG1051|consen 296 GSN-------------Y-GAI----DAANLLKPLL-ARGGLWCIGATTLETYRKCIEKDPAL--ERRWQLVLVPI-PSVE 353 (898)
T ss_pred CCc-------------c-hHH----HHHHhhHHHH-hcCCeEEEecccHHHHHHHHhhCcch--hhCcceeEecc-Cccc
Confidence 853 1 345 7999999999 89999999999999999999999999 66666666666 5543
Q ss_pred -------CCcccccc-CC--CCchhhhhhccccccchhccccCCCCCCCcCchhhhhhhhHHHHHHHHHHHHHHhhhhhh
Q 001788 363 -------GMFPRLGS-NG--ILSSSVESLSPLKSAFQTTAAALPRRVSENLDPARRMSCCRQCLQNYEQELAKLSKEFEK 432 (1013)
Q Consensus 363 -------gl~~~~e~-h~--i~d~al~~~v~~~~~~~~~~~~~r~~pd~aid~a~~~~~~~~~~~~~e~e~~~l~~~~~~ 432 (1013)
|++++||. || |.++++..++ .++.+|++ .+++||+|+| |++|+....+.
T Consensus 354 ~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~---~~s~~~~t-~r~lpd~aid--------------l~dEa~a~~~~--- 412 (898)
T KOG1051|consen 354 NLSLILPGLSERYEVHHGVRISDESLFSAA---QLSARYIT-LSFLPDCAID--------------LEDEAAALVKS--- 412 (898)
T ss_pred chhhhhhhhhhhhccccCCccccccccccc---chhhhhcc-cCcCchhccc--------------HHHHHHHHHhh---
Confidence 99999999 77 7889888888 99999999 6777665555 44454433321
Q ss_pred cccchhhhhccCCchHHHhhhccCCCCcchhhhccchhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCcccccCCCC
Q 001788 433 SSSEVKSEVARPLLPQWLHNAKAHDGDDKTAEQTENKDQDLIWKQKSQELQKKWNDTCLNQHPNFHPSSLGHERIVPVPL 512 (1013)
Q Consensus 433 ~~~~~~~~~~~~~lp~wlq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kw~~~c~~lh~~~~~~~~~~~~~~~~~~ 512 (1013)
...++|+|||+.++... .++.++.+|++||+ ..+|.+.+..+..+
T Consensus 413 ---------~~~~lP~wL~~~~~~~~---------------~~~~e~~~L~kk~d---~~~h~r~~~~~~~~-------- 457 (898)
T KOG1051|consen 413 ---------QAESLPPWLQNLERVDI---------------KLQDEISELQKKWN---QALHKRPSLESLAP-------- 457 (898)
T ss_pred ---------hhhhCCHHHHhhhhhhh---------------hhHHHHHHHHHhhh---hhhccccccccccc--------
Confidence 24568999999886321 15778999999999 55664432111100
Q ss_pred cccccccccccccCCCCchhhccccccccccccCCCCCCcc-hhhccCCCCCCceeccccCcccccCC---CCCcCCccc
Q 001788 513 SMTGLYNSNLLARQPFQPKVQLNRNLGDTLQLNSNMVSSQP-AERAVSPLNSPVRTDLVLGRSKVLES---APEKTHIEP 588 (1013)
Q Consensus 513 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~v~tdl~lg~~~~s~~---~~~~~~~~~ 588 (1013)
.+...+|.+............++..+++-.+.. +.....+...++.+|+.+|+++.... ........+
T Consensus 458 --------~~~~~~~l~~~~~~~~s~~~~l~~~~~~~~~~~~~~k~~r~~d~~~~~~l~~~~~p~~~~~~~~~~~~~~~~ 529 (898)
T KOG1051|consen 458 --------SKPTQQPLSASVDSERSVIEELKLKKNSLDRNSLLAKAHRPNDYTRETDLRYGRIPDELSEKSNDNQGGESD 529 (898)
T ss_pred --------cccccccchhhhccchhHHhhhccccCCcccchhhhcccCCCCcchhhhccccccchhhhhhcccccCCccc
Confidence 011111111111111122222323222221112 33333334456666777766652221 111125668
Q ss_pred cccccccccCCCCCCcccccccccCCCCCCHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceE
Q 001788 589 VKDFLGCISSEPPQNKLHESQNDQLQKPLDPDSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWL 668 (1013)
Q Consensus 589 i~~~~s~~t~~p~~~~~~~~~~~~~~~~~d~e~l~~L~~~L~~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~l 668 (1013)
|..+++.|||||+.++++ .+.++|+.|++.|.++|+||++|+.+|+.+|.+++.|..++ +++.||
T Consensus 530 i~~~~s~~tgip~~~~~~----------~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~gl~~~-----~~~awf 594 (898)
T KOG1051|consen 530 ISEVVSRWTGIPVDRLAE----------AEAERLKKLEERLHERVIGQDEAVAAIAAAIRRSRAGLKDP-----NPDAWF 594 (898)
T ss_pred hhhhhhhhcCCchhhhhh----------hHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccCCC-----CCCeEE
Confidence 999999999999998776 58899999999999999999999999999999999987654 688999
Q ss_pred EEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCC-----CCcccccccchhhhHHHHHHcCCCEEEEEeCCCCCCH
Q 001788 669 LFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHE-----EPEVRVRGKTALDKIGEAVKRNPFSVILLEDIDEADM 743 (1013)
Q Consensus 669 Lf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~-----~~~~g~~G~~~~~~L~eal~~~p~~VV~lDEIdka~~ 743 (1013)
+|.||+|||||+||++||+.+|+++..||++||++|++ ++||||+||+.+|+|+++++++||+|||||||||||+
T Consensus 595 lflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~ 674 (898)
T KOG1051|consen 595 LFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHP 674 (898)
T ss_pred EEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCH
Confidence 99999999999999999999999999999999999764 7799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccc
Q 001788 744 VVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASW 823 (1013)
Q Consensus 744 ~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~ 823 (1013)
.+++.|+++|++|+++|+.|++|||+|+|||||+|+++..+.... . .++++......++..+
T Consensus 675 ~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~~~~i~~~~---~-~~~~l~~~~~~~~~~~-------------- 736 (898)
T KOG1051|consen 675 DVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVGSSAIANDA---S-LEEKLLDMDEKRGSYR-------------- 736 (898)
T ss_pred HHHHHHHHHHhcCccccCCCcEeeccceEEEEecccchHhhhccc---c-cccccccchhhhhhhh--------------
Confidence 999999999999999999999999999999999999887554321 0 1111111101111000
Q ss_pred hhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCC
Q 001788 824 LDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKP 903 (1013)
Q Consensus 824 ~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~P 903 (1013)
..+. ..+ |... .| .+ +.|+|||++|+|.++.|+|
T Consensus 737 ---------~~k~----------~v~-------------~~~~----~~--------~~--~~~r~Ef~nrid~i~lf~~ 770 (898)
T KOG1051|consen 737 ---------LKKV----------QVS-------------DAVR----IY--------NK--QFFRKEFLNRIDELDLNLP 770 (898)
T ss_pred ---------hhhh----------hhh-------------hhhh----cc--------cc--cccChHHhcccceeeeecc
Confidence 0000 000 0000 00 00 2799999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHHHhCCC---CChHHHHHHHHHHHhHHHHHHHHcCCCCCCCCCc
Q 001788 904 VDFGRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLVGGVW---LGRTGLEDWTEKVLVPSLHQLKLRLPNNATAATD 980 (1013)
Q Consensus 904 l~~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~~~~~---~gar~l~~~ie~~l~~~l~~~~~~~~~~~~~~~~ 980 (1013)
++++++.+|+...+.+..+++...++.+.+++.+.++++..+| +|+|+|+++|++.|...|+..++ ..+.+ ..
T Consensus 771 l~~~~~~~i~~~~~~e~~~r~~~~~~~~~v~~~~~~~v~~~~~d~~ygAr~ikr~i~~~~~~~la~~~l-~ei~~---~~ 846 (898)
T KOG1051|consen 771 LDRDELIEIVNKQLTEIEKRLEERELLLLVTDRVDDKVLFKGYDFDYGARPIKRSIEERFENRLAEALL-GEVED---GL 846 (898)
T ss_pred cchhhHhhhhhhHHHHHHHHhhhhHHHHHHHHHHHhhhhhcCcChHHHhhHHHHHHHHHHHHHHhhhhe-eeecC---Cc
Confidence 9999999999999999988888777889999999999999998 79999999999999999999998 66664 44
Q ss_pred eeEEEE
Q 001788 981 ESATVR 986 (1013)
Q Consensus 981 ~~~l~~ 986 (1013)
+++++.
T Consensus 847 ~~~i~~ 852 (898)
T KOG1051|consen 847 TERILV 852 (898)
T ss_pred eEEEEe
Confidence 555443
No 3
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=100.00 E-value=1.5e-92 Score=878.46 Aligned_cols=756 Identities=19% Similarity=0.226 Sum_probs=582.7
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHcCCCChHHHHHHHHcCCCCCchhhHHHHHHHHHHHhcccCCccCCCC
Q 001788 12 LTPEAASVLNHSIAEASRRNHGQTTPLHVAATLLASPSGYLRQACIKSHPNSSHPLQCRALELCFSVALERLPTAQQNVS 91 (1013)
Q Consensus 12 ~T~~a~~aL~~A~~~A~~~~h~~itp~HLL~aLL~~~~gl~~~~l~~~~~d~~~~~~~~~Le~~~~~~L~r~p~~~~~~~ 91 (1013)
||++++++|..|+.+|++++|++|+|+|||+|||.+++|.+..++..+|++ ...|+.++...+.+.|...
T Consensus 1 Lt~~a~~~L~~A~~~A~~~~h~~I~~eHLLlaLL~~~~~~~~~iL~~~Gvd------~~~Lr~~le~~l~~~p~~~---- 70 (852)
T TIGR03345 1 LNPTSRRALEQAAALCVARGHPEVELEHWLLALLDQPDSDLAAILRHFGVD------LGRLKADLARALDKLPRGN---- 70 (852)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHhccCcHHHHHHHHcCCC------HHHHHHHHHHHhccCCCCC----
Confidence 699999999999999999999999999999999999999999999999998 4778889998898888632
Q ss_pred CCCCCcccHHHHHHHHHHHHH-HHhcCCCCCCCCchhhccchHHHHHHhccCCch----HHHHHhc-CCChHHHHHHHHH
Q 001788 92 PGLDPPISNALMAALKRAQAH-QRRGCPEQQQQPLLAVKVELEQLIISILDDPSV----SRVMREA-SFSSPAVKATIEQ 165 (1013)
Q Consensus 92 ~~~~p~~S~~l~~vL~~A~~~-a~~g~~e~~~~~~i~~kVe~ehLllaLl~d~~~----s~iL~~~-g~~~~~ik~~i~~ 165 (1013)
+..|++|+.+.++|+.|+.+ +.. +++.||++ +|||+||+++++. .+++... |++.+.+...+.+
T Consensus 71 -~~~~~~S~~l~~vL~~A~~~~a~~-----~g~~~I~t----eHLLlALl~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (852)
T TIGR03345 71 -TRTPVFSPHLVELLQEAWLLASLE-----LGDGRIRS----GHLLLALLTDPELRRLLGSISPELAKIDREALREALPA 140 (852)
T ss_pred -CCCCCcCHHHHHHHHHHHHHHHHH-----cCCCcccH----HHHHHHHHccccchhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 24688999999999999974 443 67888885 9999999988652 4577777 8988888877765
Q ss_pred h-hcCC--C------C----CC--CC----CCC---------CCCCCC--------------CCCCcCCCcccccCCCcc
Q 001788 166 S-LNSS--C------S----VS--NS----SPI---------GLGFRP--------------SSRNLYMNPRLQQAGGVC 203 (1013)
Q Consensus 166 ~-~~~~--~------~----~~--~~----~~~---------~g~~~p--------------~~r~~~~np~l~~~~~~~ 203 (1013)
. .+.. . . .. .. ..| .|++|| |+|+.+|||+|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lL------- 213 (852)
T TIGR03345 141 LVEGSAEASAAAADAGPAAAAAGAAGTSALDQYTTDLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPIL------- 213 (852)
T ss_pred HhcCCccccccccccccccccccccchhhHHHHhhhHHHHhcCCCCCcccCCHHHHHHHHHHHhcCCcCceeE-------
Confidence 4 2211 0 0 00 00 001 378888 68999999999
Q ss_pred cCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-c-cc--chhhhHHHHHHHHHHHHhhcCCCCceEEEecchh
Q 001788 204 GGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-F-TC--DKAGIVSKLKDLGALIETKFGNGDGVILDLGDLK 277 (1013)
Q Consensus 204 vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~-~~--~rge~e~r~~~l~~~~~~~~~~~~~~il~idel~ 277 (1013)
||+| |||++|++||++|..|+||+.|++.++++++++ + +| |+|+||+||++++++++.. +.++||||||||
T Consensus 214 vG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~---~~~~ILfIDEih 290 (852)
T TIGR03345 214 TGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKAS---PQPIILFIDEAH 290 (852)
T ss_pred ECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhc---CCCeEEEEeChH
Confidence 9999 999999999999999999999999999999999 4 54 9999999999999999864 579999999999
Q ss_pred HHHhcccccCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEecCHHHHHHhhhcCCCCCCCCCCeeeeccC
Q 001788 278 WLVEQQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATCETYLRCQVYHPSMENDWDLQAVPIAA 357 (1013)
Q Consensus 278 ~l~~~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~IgatT~~~Y~k~~~~~~ale~~~rfq~v~v~e 357 (1013)
.|+++++. . +.. |++|+|||++ ++|++.||||||++||++|+++|||| .||||.|.|++
T Consensus 291 ~l~~~g~~-~-------------~~~----d~~n~Lkp~l-~~G~l~~IgaTT~~e~~~~~~~d~AL--~rRf~~i~v~e 349 (852)
T TIGR03345 291 TLIGAGGQ-A-------------GQG----DAANLLKPAL-ARGELRTIAATTWAEYKKYFEKDPAL--TRRFQVVKVEE 349 (852)
T ss_pred HhccCCCc-c-------------ccc----cHHHHhhHHh-hCCCeEEEEecCHHHHhhhhhccHHH--HHhCeEEEeCC
Confidence 99998743 1 223 7899999999 79999999999999999999999999 99999999999
Q ss_pred CCCCC-------CCcccccc-CC--CCchhhhhhccccccchhccccCCCCCCCcCc---hhhhh-----hhhHHHHHHH
Q 001788 358 KTPLS-------GMFPRLGS-NG--ILSSSVESLSPLKSAFQTTAAALPRRVSENLD---PARRM-----SCCRQCLQNY 419 (1013)
Q Consensus 358 ~~~~~-------gl~~~~e~-h~--i~d~al~~~v~~~~~~~~~~~~~r~~pd~aid---~a~~~-----~~~~~~~~~~ 419 (1013)
|+.+ |+..+|+. |+ |+|+++.+++ .++.+|+. +|++|||||| +||+. .+-|...+.+
T Consensus 350 -ps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~---~ls~ryi~-~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~ 424 (852)
T TIGR03345 350 -PDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAV---ELSHRYIP-GRQLPDKAVSLLDTACARVALSQNATPAALEDL 424 (852)
T ss_pred -CCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHH---HHcccccc-cccCccHHHHHHHHHHHHHHHhccCCchhHHHH
Confidence 8866 89999999 77 7899999999 99999999 8999999986 45443 1223445667
Q ss_pred HHHHHHHhhhhhhcccchhhhhccCCchHHHhhhccCCCCcchhhhccchhhhHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 001788 420 EQELAKLSKEFEKSSSEVKSEVARPLLPQWLHNAKAHDGDDKTAEQTENKDQDLIWKQKSQELQKKWNDTCLNQHPNFHP 499 (1013)
Q Consensus 420 e~e~~~l~~~~~~~~~~~~~~~~~~~lp~wlq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kw~~~c~~lh~~~~~ 499 (1013)
++++.+++.+.... .+....+.. ......+...+...+++++..++.+|+..+...... .
T Consensus 425 ~~~~~~~~~~~~~~-----------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~- 484 (852)
T TIGR03345 425 RRRIAALELELDAL-----------------EREAALGAD-HDERLAELRAELAALEAELAALEARWQQEKELVEAI-L- 484 (852)
T ss_pred HHHHHHHHHHHHHH-----------------hhhhccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-
Confidence 77766555432211 000000000 000000011233446777788888898754321100 0
Q ss_pred CCCCcccccCCCCcccccccccccccCCCCchhhccccccccccccCCCCCCcchhhccCCCCCCceeccccCcccccCC
Q 001788 500 SSLGHERIVPVPLSMTGLYNSNLLARQPFQPKVQLNRNLGDTLQLNSNMVSSQPAERAVSPLNSPVRTDLVLGRSKVLES 579 (1013)
Q Consensus 500 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~tdl~lg~~~~s~~ 579 (1013)
...... .+. . . .+ ....++.+..++..+..+..... ..++
T Consensus 485 --~~~~~~---------~~~--~-~----~~------~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------------- 524 (852)
T TIGR03345 485 --ALRAEL---------EAD--A-D----AP------ADDDAALRAQLAELEAALASAQG--EEPL-------------- 524 (852)
T ss_pred --HHHHHh---------hhc--c-c----ch------hhhhHHHHHHHHHHHHHHHHHhh--cccc--------------
Confidence 000000 000 0 0 00 00001111111111111111000 0000
Q ss_pred CCCcCCccccccccccccCCCCCCcccccccccCCCCCCHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhhhcC-CCC
Q 001788 580 APEKTHIEPVKDFLGCISSEPPQNKLHESQNDQLQKPLDPDSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLGNG-KRR 658 (1013)
Q Consensus 580 ~~~~~~~~~i~~~~s~~t~~p~~~~~~~~~~~~~~~~~d~e~l~~L~~~L~~~ViGQ~~ai~~I~~ai~~~~~g~~-~~r 658 (1013)
....|+..+|+.+++.|||||+.++.. .+.+++..|++.|+++|+||++|++.|+.++.++++|+. +++
T Consensus 525 ~~~~v~~~~i~~vv~~~tgip~~~~~~----------~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~ 594 (852)
T TIGR03345 525 VFPEVDAQAVAEVVADWTGIPVGRMVR----------DEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRK 594 (852)
T ss_pred ccceecHHHHHHHHHHHHCCCchhhch----------hHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCCCCC
Confidence 022457789999999999999998876 588899999999999999999999999999999999985 455
Q ss_pred CCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCC--------CCcccccccchhhhHHHHHHcCCC
Q 001788 659 GAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHE--------EPEVRVRGKTALDKIGEAVKRNPF 730 (1013)
Q Consensus 659 ~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~--------~~~~g~~G~~~~~~L~eal~~~p~ 730 (1013)
|+ +||||+||||||||++|++||+.+|++...++++||++|.+ +++|||+||+.+|.|+++++++|+
T Consensus 595 p~-----~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~ 669 (852)
T TIGR03345 595 PL-----GVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPY 669 (852)
T ss_pred Cc-----eEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhCCC
Confidence 54 46999999999999999999999999888999999999864 578999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHh
Q 001788 731 SVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRL 810 (1013)
Q Consensus 731 ~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~ 810 (1013)
+||+||||||+|+++++.|+++|++|+++|+.|+.++|+|++||||||+|++.+.....+.
T Consensus 670 svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~------------------- 730 (852)
T TIGR03345 670 SVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADP------------------- 730 (852)
T ss_pred cEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCc-------------------
Confidence 9999999999999999999999999999999999999999999999999887654421100
Q ss_pred hhccccccccccchhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhh
Q 001788 811 SIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQD 890 (1013)
Q Consensus 811 ~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pe 890 (1013)
+..+. ...+++ . + ...+. +.|+|+
T Consensus 731 -------~~~~~--------~~~~~~-----------~-----------------~-----~~~~~--------~~f~PE 754 (852)
T TIGR03345 731 -------ETAPD--------PEALLE-----------A-----------------L-----RPELL--------KVFKPA 754 (852)
T ss_pred -------ccCcc--------hHHHHH-----------H-----------------H-----HHHHH--------HhccHH
Confidence 00000 000000 0 0 00011 279999
Q ss_pred HHhhhccceecCCCChhhHHHHHHHHHHHHHHHhhcC-CcceecCHHHHHHHHhCCC---CChHHHHHHHHHHHhHHHHH
Q 001788 891 LLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGD-ALSIEILDEALEKLVGGVW---LGRTGLEDWTEKVLVPSLHQ 966 (1013)
Q Consensus 891 fl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~-~~~L~id~~a~~~L~~~~~---~gar~l~~~ie~~l~~~l~~ 966 (1013)
|++|+| +|+|+||+.+++.+|+...|.++.+++..+ ++.++++++++++|+..++ +|+|+|+++|++.+.++|++
T Consensus 755 flnRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~ 833 (852)
T TIGR03345 755 FLGRMT-VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSR 833 (852)
T ss_pred Hhccee-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHH
Confidence 999997 999999999999999999999888877655 8999999999999999997 59999999999999999999
Q ss_pred HHHcCCCC
Q 001788 967 LKLRLPNN 974 (1013)
Q Consensus 967 ~~~~~~~~ 974 (1013)
.++.....
T Consensus 834 ~~l~~~~~ 841 (852)
T TIGR03345 834 QILERLAA 841 (852)
T ss_pred HHHhChhc
Confidence 99987766
No 4
>CHL00095 clpC Clp protease ATP binding subunit
Probab=100.00 E-value=1.4e-91 Score=874.32 Aligned_cols=720 Identities=17% Similarity=0.242 Sum_probs=576.6
Q ss_pred hhhccHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHcCCCChHHHHHHHHcCCCCCchhhHHHHHHHHHHHhcccCCccC
Q 001788 9 QQTLTPEAASVLNHSIAEASRRNHGQTTPLHVAATLLASPSGYLRQACIKSHPNSSHPLQCRALELCFSVALERLPTAQQ 88 (1013)
Q Consensus 9 ~~~~T~~a~~aL~~A~~~A~~~~h~~itp~HLL~aLL~~~~gl~~~~l~~~~~d~~~~~~~~~Le~~~~~~L~r~p~~~~ 88 (1013)
.++||++++++|..|+.+|++++|++|+|+|||+|||.+++|++..+|..+|++ ...++..+...+.+.+...
T Consensus 2 ~~rfT~~a~~vL~~A~~~A~~~~h~~V~~EHLLLaLL~~~~~~a~~iL~~~gid------~~~l~~~l~~~l~~~~~~~- 74 (821)
T CHL00095 2 FERFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEGTGIAARALKSMGVT------LKDARIEVEKIIGRGTGFV- 74 (821)
T ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCcCcHHHHHHHHHhCCCchHHHHHHHcCCC------HHHHHHHHHHHHhcCCCCC-
Confidence 468999999999999999999999999999999999999999999999999998 3666677776666543211
Q ss_pred CCCCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCCCchhhccchHHHHHHhccCCc--hHHHHHhcCCChHHHHHHHHHh
Q 001788 89 NVSPGLDPPISNALMAALKRAQAHQRRGCPEQQQQPLLAVKVELEQLIISILDDPS--VSRVMREASFSSPAVKATIEQS 166 (1013)
Q Consensus 89 ~~~~~~~p~~S~~l~~vL~~A~~~a~~g~~e~~~~~~i~~kVe~ehLllaLl~d~~--~s~iL~~~g~~~~~ik~~i~~~ 166 (1013)
+..|++|+.+..+|+.|+..++. +++++|.+ +|||+||++++. ..++|...|++...++..+.+.
T Consensus 75 ----~~~~~~S~~~~~vL~~A~~~A~~-----~~~~~I~~----eHLLlALL~~~ds~a~~iL~~~gvd~~~L~~~l~~~ 141 (821)
T CHL00095 75 ----AVEIPFTPRAKRVLEMSLEEARD-----LGHNYIGT----EHLLLALLEEGEGVAARVLENLGVDLSKIRSLILNL 141 (821)
T ss_pred ----ccccccCHHHHHHHHHHHHHHHH-----hCCCcccH----HHHHHHHHhCCCchHHHHHHHcCCCHHHHHHHHHHH
Confidence 24688999999999999999987 77888775 999999998765 3689999999999998888765
Q ss_pred hcCCC--C-C-C---CCC----CC---------CCCCCC--------------CCCCcCCCcccccCCCcccCCC--hhH
Q 001788 167 LNSSC--S-V-S---NSS----PI---------GLGFRP--------------SSRNLYMNPRLQQAGGVCGGQS--EPE 210 (1013)
Q Consensus 167 ~~~~~--~-~-~---~~~----~~---------~g~~~p--------------~~r~~~~np~l~~~~~~~vG~~--gkt 210 (1013)
.+... . . . ... .| .|++|| |+|+.+|||+| ||+| |||
T Consensus 142 l~~~~e~~~~~~~~~~~~~~l~~~~~~l~~~a~~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL-------~G~pGvGKT 214 (821)
T CHL00095 142 IGEIIEAILGAEQSRSKTPTLEEFGTNLTKEAIDGNLDPVIGREKEIERVIQILGRRTKNNPIL-------IGEPGVGKT 214 (821)
T ss_pred hccccccccccccccccchHHHHHHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHcccccCCeEE-------ECCCCCCHH
Confidence 43211 1 0 0 000 11 488899 78999999999 9999 999
Q ss_pred HHHHHHHHHHHhcCCcccccCcEEEEeccc--ccc--chhhhHHHHHHHHHHHHhhcCCCCceEEEecchhHHHhccccc
Q 001788 211 MVVRESLAKIESKELDGVLKNVQIIRLDKD--FTC--DKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKWLVEQQVTS 286 (1013)
Q Consensus 211 a~v~~la~~i~~~~vp~~L~~~~~~~l~~~--~~~--~rge~e~r~~~l~~~~~~~~~~~~~~il~idel~~l~~~~~~~ 286 (1013)
++|++||++|..++||+.|++.+|+++|++ ++| ||||||+||++++++++. .+++||||||||.|++++..
T Consensus 215 al~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~----~~~~ILfiDEih~l~~~g~~- 289 (821)
T CHL00095 215 AIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQE----NNNIILVIDEVHTLIGAGAA- 289 (821)
T ss_pred HHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHh----cCCeEEEEecHHHHhcCCCC-
Confidence 999999999999999999999999999998 465 999999999999999987 57999999999999998742
Q ss_pred CCCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEecCHHHHHHhhhcCCCCCCCCCCeeeeccCCCCCC----
Q 001788 287 FGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATCETYLRCQVYHPSMENDWDLQAVPIAAKTPLS---- 362 (1013)
Q Consensus 287 ~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~IgatT~~~Y~k~~~~~~ale~~~rfq~v~v~e~~~~~---- 362 (1013)
. |.+ +++|+|||++ +||+|+||||||+++|++|+++||+| .+||++|.|++ |+.+
T Consensus 290 ~-------------g~~----~~a~lLkp~l-~rg~l~~IgaTt~~ey~~~ie~D~aL--~rRf~~I~v~e-p~~~e~~a 348 (821)
T CHL00095 290 E-------------GAI----DAANILKPAL-ARGELQCIGATTLDEYRKHIEKDPAL--ERRFQPVYVGE-PSVEETIE 348 (821)
T ss_pred C-------------Ccc----cHHHHhHHHH-hCCCcEEEEeCCHHHHHHHHhcCHHH--HhcceEEecCC-CCHHHHHH
Confidence 1 223 6999999999 89999999999999999999999999 99999999999 7654
Q ss_pred ---CCcccccc-CC--CCchhhhhhccccccchhccccCCCCCCCcCch---hhhh-----hhhHHHHHHHHHHHHHHhh
Q 001788 363 ---GMFPRLGS-NG--ILSSSVESLSPLKSAFQTTAAALPRRVSENLDP---ARRM-----SCCRQCLQNYEQELAKLSK 428 (1013)
Q Consensus 363 ---gl~~~~e~-h~--i~d~al~~~v~~~~~~~~~~~~~r~~pd~aid~---a~~~-----~~~~~~~~~~e~e~~~l~~ 428 (1013)
+++.+|+. |+ |+++++..++ .++.+|++ +|++||||||. +++. ...|...+.+++++.++..
T Consensus 349 ILr~l~~~~e~~~~v~i~deal~~i~---~ls~~yi~-~r~lPdkaidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (821)
T CHL00095 349 ILFGLRSRYEKHHNLSISDKALEAAA---KLSDQYIA-DRFLPDKAIDLLDEAGSRVRLINSRLPPAARELDKELREILK 424 (821)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHH---HHhhccCc-cccCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHH
Confidence 88999999 66 7899999999 99999999 89999999765 4432 1123445666777666654
Q ss_pred hhhhcccchhhhhccCCchHHHhhhccCCCCcchhhhccchhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccccc
Q 001788 429 EFEKSSSEVKSEVARPLLPQWLHNAKAHDGDDKTAEQTENKDQDLIWKQKSQELQKKWNDTCLNQHPNFHPSSLGHERIV 508 (1013)
Q Consensus 429 ~~~~~~~~~~~~~~~~~lp~wlq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kw~~~c~~lh~~~~~~~~~~~~~~ 508 (1013)
+.++.... . .|-+. .+..++...+++++..+...|+.....
T Consensus 425 ~~~~~~~~-------~---~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 465 (821)
T CHL00095 425 DKDEAIRE-------Q---DFETA-------------KQLRDREMEVRAQIAAIIQSKKTEEEK---------------- 465 (821)
T ss_pred HHHHHHhC-------c---chHHH-------------HHHHHHHHHHHHHHHHHHHHHHhhhcc----------------
Confidence 33211000 0 00000 000111223344455555555432100
Q ss_pred CCCCcccccccccccccCCCCchhhccccccccccccCCCCCCcchhhccCCCCCCceeccccCcccccCCCCCcCCccc
Q 001788 509 PVPLSMTGLYNSNLLARQPFQPKVQLNRNLGDTLQLNSNMVSSQPAERAVSPLNSPVRTDLVLGRSKVLESAPEKTHIEP 588 (1013)
Q Consensus 509 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~tdl~lg~~~~s~~~~~~~~~~~ 588 (1013)
+. ....++.++
T Consensus 466 -------------------------------------------------------~~--------------~~~~v~~~~ 476 (821)
T CHL00095 466 -------------------------------------------------------RL--------------EVPVVTEED 476 (821)
T ss_pred -------------------------------------------------------cc--------------cCCccCHHH
Confidence 00 001245678
Q ss_pred cccccccccCCCCCCcccccccccCCCCCCHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhhhcC-CCCCCCCCCCce
Q 001788 589 VKDFLGCISSEPPQNKLHESQNDQLQKPLDPDSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLGNG-KRRGAGSKGDMW 667 (1013)
Q Consensus 589 i~~~~s~~t~~p~~~~~~~~~~~~~~~~~d~e~l~~L~~~L~~~ViGQ~~ai~~I~~ai~~~~~g~~-~~r~~~sk~~~~ 667 (1013)
|+.+++.|||||+.++.. .+.+++..|++.|.++|+||++|++.|+.+|.+++.|+. +++|++ +
T Consensus 477 i~~~~~~~tgip~~~~~~----------~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~-----~ 541 (821)
T CHL00095 477 IAEIVSAWTGIPVNKLTK----------SESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIA-----S 541 (821)
T ss_pred HHHHHHHHHCCCchhhch----------hHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCCCCce-----E
Confidence 999999999999999876 588899999999999999999999999999999999975 455554 5
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCC--------CCcccccccchhhhHHHHHHcCCCEEEEEeCCC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHE--------EPEVRVRGKTALDKIGEAVKRNPFSVILLEDID 739 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~--------~~~~g~~G~~~~~~L~eal~~~p~~VV~lDEId 739 (1013)
|||+||+|||||++|++||+.+|++..+++++||++|.+ ++++||+|++.++.|+++++++|++||||||||
T Consensus 542 ~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeie 621 (821)
T CHL00095 542 FLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIE 621 (821)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChh
Confidence 999999999999999999999999989999999999864 467899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccc
Q 001788 740 EADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKR 819 (1013)
Q Consensus 740 ka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~kr 819 (1013)
|+|+++++.|+++|++|+++|..|++++|+|+|||||||+|++.+..... +-||.- ...
T Consensus 622 ka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~-------------~~gf~~--------~~~ 680 (821)
T CHL00095 622 KAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSG-------------GLGFEL--------SEN 680 (821)
T ss_pred hCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhcc-------------ccCCcc--------ccc
Confidence 99999999999999999999999999999999999999998765432100 001100 000
Q ss_pred cccchhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccce
Q 001788 820 RASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAI 899 (1013)
Q Consensus 820 k~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV 899 (1013)
+. .......+++ .+ ...+. +.|+|||++|+|.+|
T Consensus 681 ~~-----~~~~~~~~~~-----------~~----------------------~~~~~--------~~f~peflnRid~ii 714 (821)
T CHL00095 681 QL-----SEKQYKRLSN-----------LV----------------------NEELK--------QFFRPEFLNRLDEII 714 (821)
T ss_pred cc-----ccccHHHHHH-----------HH----------------------HHHHH--------HhcCHHHhccCCeEE
Confidence 00 0000000000 00 00111 279999999999999
Q ss_pred ecCCCChhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHHHhCCC---CChHHHHHHHHHHHhHHHHHHHHcCCCCC
Q 001788 900 VFKPVDFGRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLVGGVW---LGRTGLEDWTEKVLVPSLHQLKLRLPNNA 975 (1013)
Q Consensus 900 ~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~~~~~---~gar~l~~~ie~~l~~~l~~~~~~~~~~~ 975 (1013)
+|+||+.+++.+|+...|.++.+++..+++.|.++++++++|+..+| +|+|+|+++|++.+.++|++.++.....+
T Consensus 715 ~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~~~l~~~~~~ 793 (821)
T CHL00095 715 VFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEEVLSFKIKP 793 (821)
T ss_pred EeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHhCccCC
Confidence 99999999999999999999888888789999999999999999987 79999999999999999999999977763
No 5
>PRK10865 protein disaggregation chaperone; Provisional
Probab=100.00 E-value=3e-89 Score=851.66 Aligned_cols=770 Identities=19% Similarity=0.245 Sum_probs=596.0
Q ss_pred hhhccHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHcCCCChHHHHHHHHcCCCCCchhhHHHHHHHHHHHhcccCCccC
Q 001788 9 QQTLTPEAASVLNHSIAEASRRNHGQTTPLHVAATLLASPSGYLRQACIKSHPNSSHPLQCRALELCFSVALERLPTAQQ 88 (1013)
Q Consensus 9 ~~~~T~~a~~aL~~A~~~A~~~~h~~itp~HLL~aLL~~~~gl~~~~l~~~~~d~~~~~~~~~Le~~~~~~L~r~p~~~~ 88 (1013)
..+||+.++++|..|+.+|++++|.+|+|+|||++|++++.|.+..++..+|+| ...|+.++...+.+.|+..+
T Consensus 3 ~~~~~~~~~~~l~~a~~~a~~~~~~~~~~~hll~~l~~~~~~~~~~~l~~~~~~------~~~l~~~~~~~~~~~~~~~~ 76 (857)
T PRK10865 3 LDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVRPLLTSAGIN------AGQLRTDINQALSRLPQVEG 76 (857)
T ss_pred hHHhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCccHHHHHHHHcCCC------HHHHHHHHHHHHhhCCCCCC
Confidence 458999999999999999999999999999999999999999999999999998 47888999999998886332
Q ss_pred CCCCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCCCchhhccchHHHHHHhccCCc-hHHHHHhcCCChHHHHHHHHHhh
Q 001788 89 NVSPGLDPPISNALMAALKRAQAHQRRGCPEQQQQPLLAVKVELEQLIISILDDPS-VSRVMREASFSSPAVKATIEQSL 167 (1013)
Q Consensus 89 ~~~~~~~p~~S~~l~~vL~~A~~~a~~g~~e~~~~~~i~~kVe~ehLllaLl~d~~-~s~iL~~~g~~~~~ik~~i~~~~ 167 (1013)
. +..|++|+.+..+|+.|+.+++. +++.+|++ +|||+|+++++. .+.+|...|++.+.++..+.+..
T Consensus 77 ~---~~~~~~~~~~~~~l~~a~~~~~~-----~~~~~i~~----~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 144 (857)
T PRK10865 77 T---GGDVQPSQDLVRVLNLCDKLAQK-----RGDNFISS----ELFVLAALESRGTLADILKAAGATTANITQAIEQMR 144 (857)
T ss_pred C---CCCCCcCHHHHHHHHHHHHHHHH-----cCCCcccH----HHHHHHHHcCcchHHHHHHHcCCCHHHHHHHHHHhh
Confidence 2 25688999999999999998886 67888775 999999998866 46789999999999988876654
Q ss_pred cCCC-CC---CCC----CCC---------CCCCCC--------------CCCCcCCCcccccCCCcccCCC--hhHHHHH
Q 001788 168 NSSC-SV---SNS----SPI---------GLGFRP--------------SSRNLYMNPRLQQAGGVCGGQS--EPEMVVR 214 (1013)
Q Consensus 168 ~~~~-~~---~~~----~~~---------~g~~~p--------------~~r~~~~np~l~~~~~~~vG~~--gkta~v~ 214 (1013)
+... .. ... ..| .|++|| |+|+.++||+| +|+| |||++|+
T Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL-------~G~pGvGKT~l~~ 217 (857)
T PRK10865 145 GGESVNDQGAEDQRQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVL-------IGEPGVGKTAIVE 217 (857)
T ss_pred ccccccccccccchhHHHHHhhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEE-------ECCCCCCHHHHHH
Confidence 3211 00 000 111 388999 78999999999 9999 9999999
Q ss_pred HHHHHHHhcCCcccccCcEEEEeccc--ccc--chhhhHHHHHHHHHHHHhhcCCCCceEEEecchhHHHhcccccCCCC
Q 001788 215 ESLAKIESKELDGVLKNVQIIRLDKD--FTC--DKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKWLVEQQVTSFGVP 290 (1013)
Q Consensus 215 ~la~~i~~~~vp~~L~~~~~~~l~~~--~~~--~rge~e~r~~~l~~~~~~~~~~~~~~il~idel~~l~~~~~~~~g~~ 290 (1013)
+||++|..|+||+.|+|.+++.++++ ++| |||+||+|++++++++... ++++||||||+|.|++++.+
T Consensus 218 ~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~---~~~~ILfIDEih~l~~~~~~----- 289 (857)
T PRK10865 218 GLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQ---EGNVILFIDELHTMVGAGKA----- 289 (857)
T ss_pred HHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHc---CCCeEEEEecHHHhccCCCC-----
Confidence 99999999999999999999999999 455 9999999999999998764 67999999999999998753
Q ss_pred CCCcchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEecCHHHHHHhhhcCCCCCCCCCCeeeeccCCCCCC-------C
Q 001788 291 NSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATCETYLRCQVYHPSMENDWDLQAVPIAAKTPLS-------G 363 (1013)
Q Consensus 291 ~~~~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~IgatT~~~Y~k~~~~~~ale~~~rfq~v~v~e~~~~~-------g 363 (1013)
+|.+ |++|+|||++ ++|+|.||||||+++|++|+++||+| .||||.|.|++ |+.+ |
T Consensus 290 ---------~~~~----d~~~~lkp~l-~~g~l~~IgaTt~~e~r~~~~~d~al--~rRf~~i~v~e-P~~~~~~~iL~~ 352 (857)
T PRK10865 290 ---------DGAM----DAGNMLKPAL-ARGELHCVGATTLDEYRQYIEKDAAL--ERRFQKVFVAE-PSVEDTIAILRG 352 (857)
T ss_pred ---------ccch----hHHHHhcchh-hcCCCeEEEcCCCHHHHHHhhhcHHH--HhhCCEEEeCC-CCHHHHHHHHHH
Confidence 1334 7999999999 89999999999999999999999999 99999999999 8766 9
Q ss_pred Ccccccc-CC--CCchhhhhhccccccchhccccCCCCCCCcCch---hhhh-----hhhHHHHHHHHHHHHHHhhhhhh
Q 001788 364 MFPRLGS-NG--ILSSSVESLSPLKSAFQTTAAALPRRVSENLDP---ARRM-----SCCRQCLQNYEQELAKLSKEFEK 432 (1013)
Q Consensus 364 l~~~~e~-h~--i~d~al~~~v~~~~~~~~~~~~~r~~pd~aid~---a~~~-----~~~~~~~~~~e~e~~~l~~~~~~ 432 (1013)
+..+|+. |+ |+|+++.+++ .++++|+. +|++||||+|. +++. ..+|+-++.+++.+..+..+.+.
T Consensus 353 l~~~~e~~~~v~~~d~a~~~a~---~ls~ry~~-~~~~pdkAi~LiD~aaa~~rl~~~~kp~~L~rLer~l~~L~~E~e~ 428 (857)
T PRK10865 353 LKERYELHHHVQITDPAIVAAA---TLSHRYIA-DRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQA 428 (857)
T ss_pred HhhhhccCCCCCcCHHHHHHHH---HHhhcccc-CCCCChHHHHHHHHHhcccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 9999999 75 7899999998 99999997 89999999664 4332 34566678888888777655432
Q ss_pred cccchhhhhccCCchHHHhhhccCCCCcchhhhccchhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCcccccCCCC
Q 001788 433 SSSEVKSEVARPLLPQWLHNAKAHDGDDKTAEQTENKDQDLIWKQKSQELQKKWNDTCLNQHPNFHPSSLGHERIVPVPL 512 (1013)
Q Consensus 433 ~~~~~~~~~~~~~lp~wlq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kw~~~c~~lh~~~~~~~~~~~~~~~~~~ 512 (1013)
.... .. ......++. ...++..+..++..|+..|......+-.... ....+.
T Consensus 429 l~~e-----------------~~-~~~~~~~~~--l~~~l~~lq~e~~~L~eq~k~~k~el~~~~~----~~~ele---- 480 (857)
T PRK10865 429 LMKE-----------------SD-EASKKRLDM--LNEELSDKERQYSELEEEWKAEKASLSGTQT----IKAELE---- 480 (857)
T ss_pred HHhh-----------------hh-hHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHH----
Confidence 2100 00 000000000 1123334456666777778765543310000 000000
Q ss_pred cccccccccccccCCCCchhhccccccccccccCCCCCCcchhhccCCCCCCceeccccCcccccCCCCCcCCccccccc
Q 001788 513 SMTGLYNSNLLARQPFQPKVQLNRNLGDTLQLNSNMVSSQPAERAVSPLNSPVRTDLVLGRSKVLESAPEKTHIEPVKDF 592 (1013)
Q Consensus 513 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~tdl~lg~~~~s~~~~~~~~~~~i~~~ 592 (1013)
.+ ....... ...-+....+++++..++.+...+........... .+ -...|+.++|+.+
T Consensus 481 ---~l-~~kie~a-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----------~~~~v~~~~i~~v 539 (857)
T PRK10865 481 ---QA-KIAIEQA-----RRVGDLARMSELQYGKIPELEKQLAAATQLEGKTM--RL----------LRNKVTDAEIAEV 539 (857)
T ss_pred ---HH-HHHHHHH-----HhhhhhhhHHHhhhhhhHHHHHHHHHHHhhhcccc--cc----------ccCccCHHHHHHH
Confidence 00 0000000 00000001122333333333222211100000000 00 0124678899999
Q ss_pred cccccCCCCCCcccccccccCCCCCCHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhhhcC-CCCCCCCCCCceEEEe
Q 001788 593 LGCISSEPPQNKLHESQNDQLQKPLDPDSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLGNG-KRRGAGSKGDMWLLFM 671 (1013)
Q Consensus 593 ~s~~t~~p~~~~~~~~~~~~~~~~~d~e~l~~L~~~L~~~ViGQ~~ai~~I~~ai~~~~~g~~-~~r~~~sk~~~~lLf~ 671 (1013)
+|.|||||++++.. .+.+++..|++.|.++|+||+.|+..|..+|.+++.|+. +++|+++ ++|+
T Consensus 540 v~~~tgip~~~~~~----------~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~-----~Lf~ 604 (857)
T PRK10865 540 LARWTGIPVSRMLE----------SEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGS-----FLFL 604 (857)
T ss_pred HHHHHCCCchhhhh----------hHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCce-----EEEE
Confidence 99999999999887 588999999999999999999999999999999999875 5555544 9999
Q ss_pred ccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCC--------CCcccccccchhhhHHHHHHcCCCEEEEEeCCCCCCH
Q 001788 672 GPDRVGKKKMASALSELVSGASPIMIPLGPRRDHE--------EPEVRVRGKTALDKIGEAVKRNPFSVILLEDIDEADM 743 (1013)
Q Consensus 672 Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~--------~~~~g~~G~~~~~~L~eal~~~p~~VV~lDEIdka~~ 743 (1013)
||+|||||++|++||+.++++..+++.+||++|.+ +.+|||+|++.++.++++++.+|++|||||||+++|+
T Consensus 605 Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~ 684 (857)
T PRK10865 605 GPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHP 684 (857)
T ss_pred CCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCH
Confidence 99999999999999999998888999999998854 5678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccc
Q 001788 744 VVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASW 823 (1013)
Q Consensus 744 ~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~ 823 (1013)
.+|+.|+++|++|+++|+.|+.++|+|+|||+|||.|++.+... |++..
T Consensus 685 ~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~-----~~~~~-------------------------- 733 (857)
T PRK10865 685 DVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQER-----FGELD-------------------------- 733 (857)
T ss_pred HHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHh-----ccccc--------------------------
Confidence 99999999999999999999999999999999999987644321 00000
Q ss_pred hhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCC
Q 001788 824 LDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKP 903 (1013)
Q Consensus 824 ~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~P 903 (1013)
.. ++...+ . ..+ .+.|+|+|++|+|.+|+|+|
T Consensus 734 -------~~-----------~~~~~~-----------------~-----~~~--------~~~f~PELlnRld~iivF~P 765 (857)
T PRK10865 734 -------YA-----------HMKELV-----------------L-----GVV--------SHNFRPEFINRIDEVVVFHP 765 (857)
T ss_pred -------hH-----------HHHHHH-----------------H-----HHH--------cccccHHHHHhCCeeEecCC
Confidence 00 000000 0 000 12799999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHHHhCCC---CChHHHHHHHHHHHhHHHHHHHHcCCCCC
Q 001788 904 VDFGRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLVGGVW---LGRTGLEDWTEKVLVPSLHQLKLRLPNNA 975 (1013)
Q Consensus 904 l~~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~~~~~---~gar~l~~~ie~~l~~~l~~~~~~~~~~~ 975 (1013)
++.+++.+|++.+|.++.+++...++.+.++++++++|+.++| +|+|+|+++|++.+.++|++.++.....+
T Consensus 766 L~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~~iL~g~~~~ 840 (857)
T PRK10865 766 LGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVP 840 (857)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHHHHHcCcCCC
Confidence 9999999999999998888776678889999999999999998 69999999999999999999999877664
No 6
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=100.00 E-value=7.3e-89 Score=851.84 Aligned_cols=769 Identities=20% Similarity=0.271 Sum_probs=592.0
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHcCCCChHHHHHHHHcCCCCCchhhHHHHHHHHHHHhcccCCccCCCC
Q 001788 12 LTPEAASVLNHSIAEASRRNHGQTTPLHVAATLLASPSGYLRQACIKSHPNSSHPLQCRALELCFSVALERLPTAQQNVS 91 (1013)
Q Consensus 12 ~T~~a~~aL~~A~~~A~~~~h~~itp~HLL~aLL~~~~gl~~~~l~~~~~d~~~~~~~~~Le~~~~~~L~r~p~~~~~~~ 91 (1013)
||++++++|..|+.+|++++|.+|+|+|||++|+.+++|++..++..+|+| ...++..+...+.+.|+..+.
T Consensus 1 fT~~a~~vL~~A~~~A~~~~h~~V~~EHLLlaLl~~~~g~a~~iL~~~Gvd------~~~l~~~l~~~l~~~~~~~~~-- 72 (852)
T TIGR03346 1 FTEKFQEALQAAQSLALGRDHQQIEPEHLLKALLDQEGGLARRLLQKAGVN------VGALRQALEKELEKLPKVSGP-- 72 (852)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCccHHHHHHHHcCCC------HHHHHHHHHHHhcccccCCCC--
Confidence 799999999999999999999999999999999999999999999999998 477888888888888764432
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHhcCCCCCCCCchhhccchHHHHHHhccCCch-HHHHHhcCCChHHHHHHHHHhhcCC
Q 001788 92 PGLDPPISNALMAALKRAQAHQRRGCPEQQQQPLLAVKVELEQLIISILDDPSV-SRVMREASFSSPAVKATIEQSLNSS 170 (1013)
Q Consensus 92 ~~~~p~~S~~l~~vL~~A~~~a~~g~~e~~~~~~i~~kVe~ehLllaLl~d~~~-s~iL~~~g~~~~~ik~~i~~~~~~~ 170 (1013)
+..+++|+.+.++|+.|+..+.. ++++||++ +|||+||+++++. +++|...|++.+.+...+.+..+..
T Consensus 73 -~~~~~~S~~~~~vLe~A~~~A~~-----~g~~~I~t----eHLLlALl~e~~~a~~iL~~~gi~~~~l~~~l~~~~~~~ 142 (852)
T TIGR03346 73 -GGQVYLSPELNRLLNLAEKLAQK-----RGDEFISS----EHLLLALLDDKGTLGKLLKEAGATADALEAAINAVRGGQ 142 (852)
T ss_pred -CCCCCcCHHHHHHHHHHHHHHHH-----cCCCcccH----HHHHHHHHcCCccHHHHHHHcCCCHHHHHHHHHhhccCc
Confidence 25688999999999999998886 77888875 9999999988664 6799999999999988876543211
Q ss_pred -CCC---CCC----CCC---------CCCCCC--------------CCCCcCCCcccccCCCcccCCC--hhHHHHHHHH
Q 001788 171 -CSV---SNS----SPI---------GLGFRP--------------SSRNLYMNPRLQQAGGVCGGQS--EPEMVVRESL 217 (1013)
Q Consensus 171 -~~~---~~~----~~~---------~g~~~p--------------~~r~~~~np~l~~~~~~~vG~~--gkta~v~~la 217 (1013)
... ... ..| .|++|| |+|+.++||+| +|+| |||++|++||
T Consensus 143 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL-------~G~pGvGKT~l~~~la 215 (852)
T TIGR03346 143 KVTSANAEDQYEALEKYARDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVL-------IGEPGVGKTAIVEGLA 215 (852)
T ss_pred cccccccccchhHHHHHhhhHHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEE-------EcCCCCCHHHHHHHHH
Confidence 100 000 011 378899 78999999999 9999 9999999999
Q ss_pred HHHHhcCCcccccCcEEEEeccc-c-cc--chhhhHHHHHHHHHHHHhhcCCCCceEEEecchhHHHhcccccCCCCCCC
Q 001788 218 AKIESKELDGVLKNVQIIRLDKD-F-TC--DKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKWLVEQQVTSFGVPNSG 293 (1013)
Q Consensus 218 ~~i~~~~vp~~L~~~~~~~l~~~-~-~~--~rge~e~r~~~l~~~~~~~~~~~~~~il~idel~~l~~~~~~~~g~~~~~ 293 (1013)
++|..|+||..|+|.+++.++++ + +| |+|+||.|++.+++++... ++++||||||||.|+++|..
T Consensus 216 ~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~---~~~~ILfIDEih~l~~~g~~-------- 284 (852)
T TIGR03346 216 QRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKS---EGQIILFIDELHTLVGAGKA-------- 284 (852)
T ss_pred HHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhc---CCCeEEEeccHHHhhcCCCC--------
Confidence 99999999999999999999999 4 55 9999999999999999764 57999999999999987642
Q ss_pred cchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEecCHHHHHHhhhcCCCCCCCCCCeeeeccCCCCCC-------CCcc
Q 001788 294 TLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATCETYLRCQVYHPSMENDWDLQAVPIAAKTPLS-------GMFP 366 (1013)
Q Consensus 294 ~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~IgatT~~~Y~k~~~~~~ale~~~rfq~v~v~e~~~~~-------gl~~ 366 (1013)
.|.+ |++|+|||++ ++|+|.||||||.++|++|+++||+| .||||+|.|++ |+.+ |+..
T Consensus 285 ------~~~~----d~~~~Lk~~l-~~g~i~~IgaTt~~e~r~~~~~d~al--~rRf~~i~v~~-p~~~~~~~iL~~~~~ 350 (852)
T TIGR03346 285 ------EGAM----DAGNMLKPAL-ARGELHCIGATTLDEYRKYIEKDAAL--ERRFQPVFVDE-PTVEDTISILRGLKE 350 (852)
T ss_pred ------cchh----HHHHHhchhh-hcCceEEEEeCcHHHHHHHhhcCHHH--HhcCCEEEeCC-CCHHHHHHHHHHHHH
Confidence 1334 7899999999 89999999999999999999999999 99999999999 8766 8999
Q ss_pred cccc-CC--CCchhhhhhccccccchhccccCCCCCCCcCc---hhhhh-----hhhHHHHHHHHHHHHHHhhhhhhccc
Q 001788 367 RLGS-NG--ILSSSVESLSPLKSAFQTTAAALPRRVSENLD---PARRM-----SCCRQCLQNYEQELAKLSKEFEKSSS 435 (1013)
Q Consensus 367 ~~e~-h~--i~d~al~~~v~~~~~~~~~~~~~r~~pd~aid---~a~~~-----~~~~~~~~~~e~e~~~l~~~~~~~~~ 435 (1013)
+|+. |+ |.|.++.+++ .++++|++ +|++|||||| +||+. ..+|...+.+++++..+..+.++...
T Consensus 351 ~~e~~~~v~~~d~~i~~~~---~ls~~yi~-~r~lPdkAidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (852)
T TIGR03346 351 RYEVHHGVRITDPAIVAAA---TLSHRYIT-DRFLPDKAIDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKK 426 (852)
T ss_pred HhccccCCCCCHHHHHHHH---Hhcccccc-ccCCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 9999 77 6899999999 99999999 8999999976 45543 23456677777777666654332100
Q ss_pred chhhhhccCCchHHHhhhccCCCCcchhhhccchhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCcccccCCCCccc
Q 001788 436 EVKSEVARPLLPQWLHNAKAHDGDDKTAEQTENKDQDLIWKQKSQELQKKWNDTCLNQHPNFHPSSLGHERIVPVPLSMT 515 (1013)
Q Consensus 436 ~~~~~~~~~~lp~wlq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kw~~~c~~lh~~~~~~~~~~~~~~~~~~s~~ 515 (1013)
. .+...+ .. ..+..++...++.++..++..|......+..... ....
T Consensus 427 ~-----------------~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--------- 473 (852)
T TIGR03346 427 E-----------------KDEASK-ER--LEDLEKELAELEEEYADLEEQWKAEKAAIQGIQQ----IKEE--------- 473 (852)
T ss_pred c-----------------chhHHH-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH---------
Confidence 0 000000 00 0001133345566677777778764322110000 0000
Q ss_pred ccccccccccCCCCchhhccccccccccccCCCCCCcchhhccCCCCCCceeccccCcccccCCCCCcCCcccccccccc
Q 001788 516 GLYNSNLLARQPFQPKVQLNRNLGDTLQLNSNMVSSQPAERAVSPLNSPVRTDLVLGRSKVLESAPEKTHIEPVKDFLGC 595 (1013)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~tdl~lg~~~~s~~~~~~~~~~~i~~~~s~ 595 (1013)
+........+ .....+......+++..++.....+..............+ ....++.++|+.+++.
T Consensus 474 -~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----------~~~~v~~~~i~~v~~~ 539 (852)
T TIGR03346 474 -IEQVRLELEQ---AEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPRL----------LREEVTAEEIAEVVSR 539 (852)
T ss_pred -HHHHHHHHHH---HHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhcccccc----------ccCCcCHHHHHHHHHH
Confidence 0000000000 0000000011122333222221111100000000000000 0124577899999999
Q ss_pred ccCCCCCCcccccccccCCCCCCHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhhhcC-CCCCCCCCCCceEEEeccC
Q 001788 596 ISSEPPQNKLHESQNDQLQKPLDPDSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLGNG-KRRGAGSKGDMWLLFMGPD 674 (1013)
Q Consensus 596 ~t~~p~~~~~~~~~~~~~~~~~d~e~l~~L~~~L~~~ViGQ~~ai~~I~~ai~~~~~g~~-~~r~~~sk~~~~lLf~Gp~ 674 (1013)
|||||+.++.. .+.+++..|++.|.++|+||++|++.|..+|.+++.|+. +++|. .+|||+||+
T Consensus 540 ~tgip~~~~~~----------~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~-----~~~Lf~Gp~ 604 (852)
T TIGR03346 540 WTGIPVSKMLE----------GEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPI-----GSFLFLGPT 604 (852)
T ss_pred hcCCCcccccH----------HHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhccCCCCCCCC-----eEEEEEcCC
Confidence 99999998876 588999999999999999999999999999999999875 44444 459999999
Q ss_pred CCccchHHHHHHHHhcCCCCceeeeCCCCCCC--------CCcccccccchhhhHHHHHHcCCCEEEEEeCCCCCCHHHH
Q 001788 675 RVGKKKMASALSELVSGASPIMIPLGPRRDHE--------EPEVRVRGKTALDKIGEAVKRNPFSVILLEDIDEADMVVR 746 (1013)
Q Consensus 675 GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~--------~~~~g~~G~~~~~~L~eal~~~p~~VV~lDEIdka~~~vq 746 (1013)
|||||++|++||+.++++..+++++||++|.+ +++|||+||+.++.|+++++++|++|||||||||+|+++|
T Consensus 605 GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~ 684 (852)
T TIGR03346 605 GVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVF 684 (852)
T ss_pred CCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHH
Confidence 99999999999999999989999999999854 5678999999999999999999999999999999999999
Q ss_pred HHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhh
Q 001788 747 GNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDE 826 (1013)
Q Consensus 747 ~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~ 826 (1013)
+.|+++|++|+++|+.|+.++|+|+|||+|||+|++.+.....+..+ +
T Consensus 685 ~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~--~------------------------------ 732 (852)
T TIGR03346 685 NVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDY--E------------------------------ 732 (852)
T ss_pred HHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccH--H------------------------------
Confidence 99999999999999999999999999999999987654332100000 0
Q ss_pred hhhccccccccCCCcccchhhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCCh
Q 001788 827 EERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDF 906 (1013)
Q Consensus 827 ~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~ 906 (1013)
.+++ .+. ..+ .+.|+|||++|||.+|+|+|++.
T Consensus 733 ------~~~~-------~~~--------------------------~~~--------~~~F~pel~~Rid~IivF~PL~~ 765 (852)
T TIGR03346 733 ------EMRE-------AVM--------------------------EVL--------RAHFRPEFLNRIDEIVVFHPLGR 765 (852)
T ss_pred ------HHHH-------HHH--------------------------HHH--------HhhcCHHHhcCcCeEEecCCcCH
Confidence 0000 000 000 12799999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHHHhCCC---CChHHHHHHHHHHHhHHHHHHHHcCCCCC
Q 001788 907 GRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLVGGVW---LGRTGLEDWTEKVLVPSLHQLKLRLPNNA 975 (1013)
Q Consensus 907 ~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~~~~~---~gar~l~~~ie~~l~~~l~~~~~~~~~~~ 975 (1013)
+++.+|+...+..+.+++...++.+.++++++++|++++| +|+|+|+++|++.+.++|++.++.....+
T Consensus 766 e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~l~~~~~~ 837 (852)
T TIGR03346 766 EQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKILAGEVAD 837 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999988877777678889999999999999999 78999999999999999999999877764
No 7
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=2.6e-85 Score=809.72 Aligned_cols=653 Identities=19% Similarity=0.249 Sum_probs=544.2
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHcCCCChHHHHHHHHcCCCCCchhhHHHHHHHHHHHhc-ccCCccCCC
Q 001788 12 LTPEAASVLNHSIAEASRRNHGQTTPLHVAATLLASPSGYLRQACIKSHPNSSHPLQCRALELCFSVALE-RLPTAQQNV 90 (1013)
Q Consensus 12 ~T~~a~~aL~~A~~~A~~~~h~~itp~HLL~aLL~~~~gl~~~~l~~~~~d~~~~~~~~~Le~~~~~~L~-r~p~~~~~~ 90 (1013)
||++++++|..|+++|++++|.+|+|+|||+|||++++ +..+|.++|++ ...++..+...+. +.|...+.
T Consensus 1 ~~~~a~~~L~~A~~~A~~~~h~~V~~EHLLlaLL~~~~--~~~iL~~~gid------~~~l~~~l~~~l~~~~p~~~~~- 71 (731)
T TIGR02639 1 ISEELERILDAALEEAKKRRHEFVTLEHILLALLFDSD--AIEILEECGGD------VEALRKDLEDYLENNLPSITEE- 71 (731)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCcCcHHHHHHHHHcCch--HHHHHHHcCCC------HHHHHHHHHHHHhhcCCCCCCC-
Confidence 68999999999999999999999999999999999886 45889999998 4667777877776 55543221
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCCCchhhccchHHHHHHhccCCch--HHHHHhcCCChHHHHHHHHH-hh
Q 001788 91 SPGLDPPISNALMAALKRAQAHQRRGCPEQQQQPLLAVKVELEQLIISILDDPSV--SRVMREASFSSPAVKATIEQ-SL 167 (1013)
Q Consensus 91 ~~~~~p~~S~~l~~vL~~A~~~a~~g~~e~~~~~~i~~kVe~ehLllaLl~d~~~--s~iL~~~g~~~~~ik~~i~~-~~ 167 (1013)
.+..|++|+.++++|+.|+..+.. ++++||++ +|||+||+++++. .++|.+.|++.+.+...+.. ..
T Consensus 72 -~~~~~~~S~~lk~vL~~A~~~A~~-----~g~~~I~t----eHLLLALl~~~~~~a~~lL~~~gi~~~~l~~~l~~~~~ 141 (731)
T TIGR02639 72 -NEADPEQTVGVQRVLQRALLHVKS-----AGKKEIGI----GDILVALFDEEDSHASYFLKSQGITRLDILEYISHGIP 141 (731)
T ss_pred -CCCCCCcCHHHHHHHHHHHHHHHH-----cCCCccCH----HHHHHHHhcCcccHHHHHHHHcCCCHHHHHHHHHhhcc
Confidence 024688999999999999999987 78999886 9999999987653 57999999999888777752 11
Q ss_pred --cCC--C--C---CC--CC----CCC---------CCCCCC--------------CCCCcCCCcccccCCCcccCCC--
Q 001788 168 --NSS--C--S---VS--NS----SPI---------GLGFRP--------------SSRNLYMNPRLQQAGGVCGGQS-- 207 (1013)
Q Consensus 168 --~~~--~--~---~~--~~----~~~---------~g~~~p--------------~~r~~~~np~l~~~~~~~vG~~-- 207 (1013)
+.. . . .. .. ..| .|++|| |+|+.++||+| +|+|
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL-------~G~pG~ 214 (731)
T TIGR02639 142 KDDGKNRDAEEAGKEEAKKQEDALEKYTVDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLL-------VGEPGV 214 (731)
T ss_pred cccccccccccccccccccchhHHHHHhhhHHHHHhcCCCCcccCcHHHHHHHHHHHhcCCCCceEE-------ECCCCC
Confidence 100 0 0 00 00 011 378888 67889999999 9999
Q ss_pred hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc--ccc--chhhhHHHHHHHHHHHHhhcCCCCceEEEecchhHHHhcc
Q 001788 208 EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD--FTC--DKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKWLVEQQ 283 (1013)
Q Consensus 208 gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~--~~~--~rge~e~r~~~l~~~~~~~~~~~~~~il~idel~~l~~~~ 283 (1013)
|||++|++||++|..++||..|++.++++++++ ++| |+|++|+|++++++++++ .+++||||||||.|++++
T Consensus 215 GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~----~~~~ILfiDEih~l~~~g 290 (731)
T TIGR02639 215 GKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEK----EPNAILFIDEIHTIVGAG 290 (731)
T ss_pred CHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhc----cCCeEEEEecHHHHhccC
Confidence 999999999999999999999999999999998 454 999999999999999987 478999999999999987
Q ss_pred cccCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEecCHHHHHHhhhcCCCCCCCCCCeeeeccCCCCCC-
Q 001788 284 VTSFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATCETYLRCQVYHPSMENDWDLQAVPIAAKTPLS- 362 (1013)
Q Consensus 284 ~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~IgatT~~~Y~k~~~~~~ale~~~rfq~v~v~e~~~~~- 362 (1013)
..+. |.+ +++|+|+|++ ++|+|.||||||++||++|+++||+| .||||.|.|++ |+.+
T Consensus 291 ~~~~-------------~~~----~~~~~L~~~l-~~g~i~~IgaTt~~e~~~~~~~d~al--~rRf~~i~v~~-p~~~~ 349 (731)
T TIGR02639 291 ATSG-------------GSM----DASNLLKPAL-SSGKLRCIGSTTYEEYKNHFEKDRAL--SRRFQKIDVGE-PSIEE 349 (731)
T ss_pred CCCC-------------ccH----HHHHHHHHHH-hCCCeEEEEecCHHHHHHHhhhhHHH--HHhCceEEeCC-CCHHH
Confidence 4321 333 6899999999 79999999999999999999999999 99999999999 8766
Q ss_pred ------CCcccccc-CC--CCchhhhhhccccccchhccccCCCCCCCcCchhhhhhhhHHHHHHHHHHHHHHhhhhhhc
Q 001788 363 ------GMFPRLGS-NG--ILSSSVESLSPLKSAFQTTAAALPRRVSENLDPARRMSCCRQCLQNYEQELAKLSKEFEKS 433 (1013)
Q Consensus 363 ------gl~~~~e~-h~--i~d~al~~~v~~~~~~~~~~~~~r~~pd~aid~a~~~~~~~~~~~~~e~e~~~l~~~~~~~ 433 (1013)
++..+|+. |+ |+|+++..++ .++++|+. +|++||||||..+. .|. ...
T Consensus 350 ~~~il~~~~~~~e~~~~v~i~~~al~~~~---~ls~ryi~-~r~~P~kai~lld~--a~a-----------~~~------ 406 (731)
T TIGR02639 350 TVKILKGLKEKYEEFHHVKYSDEALEAAV---ELSARYIN-DRFLPDKAIDVIDE--AGA-----------SFR------ 406 (731)
T ss_pred HHHHHHHHHHHHHhccCcccCHHHHHHHH---Hhhhcccc-cccCCHHHHHHHHH--hhh-----------hhh------
Confidence 78889998 76 7999999999 99999999 89999999887651 110 000
Q ss_pred ccchhhhhccCCchHHHhhhccCCCCcchhhhccchhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCcccccCCCCc
Q 001788 434 SSEVKSEVARPLLPQWLHNAKAHDGDDKTAEQTENKDQDLIWKQKSQELQKKWNDTCLNQHPNFHPSSLGHERIVPVPLS 513 (1013)
Q Consensus 434 ~~~~~~~~~~~~lp~wlq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kw~~~c~~lh~~~~~~~~~~~~~~~~~~s 513 (1013)
++..
T Consensus 407 -----------------------------------------------------------~~~~----------------- 410 (731)
T TIGR02639 407 -----------------------------------------------------------LRPK----------------- 410 (731)
T ss_pred -----------------------------------------------------------cCcc-----------------
Confidence 0000
Q ss_pred ccccccccccccCCCCchhhccccccccccccCCCCCCcchhhccCCCCCCceeccccCcccccCCCCCcCCcccccccc
Q 001788 514 MTGLYNSNLLARQPFQPKVQLNRNLGDTLQLNSNMVSSQPAERAVSPLNSPVRTDLVLGRSKVLESAPEKTHIEPVKDFL 593 (1013)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~tdl~lg~~~~s~~~~~~~~~~~i~~~~ 593 (1013)
. . + ...++.++|+.++
T Consensus 411 -----~--~--------------------------------------~-------------------~~~v~~~~i~~~i 426 (731)
T TIGR02639 411 -----A--K--------------------------------------K-------------------KANVSVKDIENVV 426 (731)
T ss_pred -----c--c--------------------------------------c-------------------ccccCHHHHHHHH
Confidence 0 0 0 0012456788999
Q ss_pred ccccCCCCCCcccccccccCCCCCCHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhhhcC-CCCCCCCCCCceEEEec
Q 001788 594 GCISSEPPQNKLHESQNDQLQKPLDPDSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLGNG-KRRGAGSKGDMWLLFMG 672 (1013)
Q Consensus 594 s~~t~~p~~~~~~~~~~~~~~~~~d~e~l~~L~~~L~~~ViGQ~~ai~~I~~ai~~~~~g~~-~~r~~~sk~~~~lLf~G 672 (1013)
+.|||+|+.+++. .+.+++..+++.|.++|+||++|++.|..++.+.+.|+. +.+|.++ +||+|
T Consensus 427 ~~~tgiP~~~~~~----------~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~-----~lf~G 491 (731)
T TIGR02639 427 AKMAHIPVKTVSV----------DDREKLKNLEKNLKAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGS-----FLFTG 491 (731)
T ss_pred HHHhCCChhhhhh----------HHHHHHHHHHHHHhcceeCcHHHHHHHHHHHHHHhcCCCCCCCCcee-----EEEEC
Confidence 9999999988765 478899999999999999999999999999999999875 5566655 99999
Q ss_pred cCCCccchHHHHHHHHhcCCCCceeeeCCCCCCC--------CCcccccccchhhhHHHHHHcCCCEEEEEeCCCCCCHH
Q 001788 673 PDRVGKKKMASALSELVSGASPIMIPLGPRRDHE--------EPEVRVRGKTALDKIGEAVKRNPFSVILLEDIDEADMV 744 (1013)
Q Consensus 673 p~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~--------~~~~g~~G~~~~~~L~eal~~~p~~VV~lDEIdka~~~ 744 (1013)
|+|||||++|++||+.++ .+++++||++|.+ ++++||+|++.++.++++++++|++|||||||||+|++
T Consensus 492 p~GvGKT~lA~~la~~l~---~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~ 568 (731)
T TIGR02639 492 PTGVGKTELAKQLAEALG---VHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPD 568 (731)
T ss_pred CCCccHHHHHHHHHHHhc---CCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHH
Confidence 999999999999999995 6899999999975 56789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccch
Q 001788 745 VRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWL 824 (1013)
Q Consensus 745 vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~ 824 (1013)
+++.|+++|++|+++|..|+.+||+|++||+|||+|++.+.....++ ..+.
T Consensus 569 ~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f--~~~~--------------------------- 619 (731)
T TIGR02639 569 IYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGF--GSEN--------------------------- 619 (731)
T ss_pred HHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCc--chhh---------------------------
Confidence 99999999999999999999999999999999999876543211110 0000
Q ss_pred hhhhhccccccccCCCcccchhhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCC
Q 001788 825 DEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPV 904 (1013)
Q Consensus 825 ~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl 904 (1013)
..+ . + ...+. +.|.|+|++|||.+|+|+||
T Consensus 620 ---------~~~-------~---------------------~-----~~~~~--------~~f~pef~~Rid~Vi~F~pL 649 (731)
T TIGR02639 620 ---------VES-------K---------------------S-----DKAIK--------KLFSPEFRNRLDAIIHFNPL 649 (731)
T ss_pred ---------hHH-------H---------------------H-----HHHHH--------hhcChHHHhcCCeEEEcCCC
Confidence 000 0 0 00111 27999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHHHhCCC---CChHHHHHHHHHHHhHHHHHHHHcCCCCC
Q 001788 905 DFGRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLVGGVW---LGRTGLEDWTEKVLVPSLHQLKLRLPNNA 975 (1013)
Q Consensus 905 ~~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~~~~~---~gar~l~~~ie~~l~~~l~~~~~~~~~~~ 975 (1013)
+.+++.+|+...+.++.+++..+++.|.++++++++|+..+| +|+|+|+++|++.+.++|++.++.....+
T Consensus 650 s~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~~l~~~~~~ 723 (731)
T TIGR02639 650 SEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEILFGKLKK 723 (731)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHHHHhCcCCC
Confidence 999999999999999888887788999999999999999887 79999999999999999999999877663
No 8
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-84 Score=789.37 Aligned_cols=654 Identities=19% Similarity=0.235 Sum_probs=539.3
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHcCCCChHHHHHHHHcCCCCCchhhHHHHHHHHHHHhcc-cCCccCCC
Q 001788 12 LTPEAASVLNHSIAEASRRNHGQTTPLHVAATLLASPSGYLRQACIKSHPNSSHPLQCRALELCFSVALER-LPTAQQNV 90 (1013)
Q Consensus 12 ~T~~a~~aL~~A~~~A~~~~h~~itp~HLL~aLL~~~~gl~~~~l~~~~~d~~~~~~~~~Le~~~~~~L~r-~p~~~~~~ 90 (1013)
||+.++++|..|+.+|++++|.+|+|+|||++||.++. +..++..++++ ...++..+...+.+ .|......
T Consensus 2 ~~~~~~~~l~~a~~~a~~~~~~~~~~~h~l~~l~~~~~--~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 73 (758)
T PRK11034 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPS--AREALEACSVD------LVALRQELEAFIEQTTPVLPASE 73 (758)
T ss_pred cCHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHcChh--HHHHHHHcCCC------HHHHHHHHHHHHhhcCCcCCCCC
Confidence 78999999999999999999999999999999998865 78899999998 46777888877763 33211110
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCCCchhhccchHHHHHHhccCCc-h-HHHHHhcCCChHHHHHHHHHhhc
Q 001788 91 SPGLDPPISNALMAALKRAQAHQRRGCPEQQQQPLLAVKVELEQLIISILDDPS-V-SRVMREASFSSPAVKATIEQSLN 168 (1013)
Q Consensus 91 ~~~~~p~~S~~l~~vL~~A~~~a~~g~~e~~~~~~i~~kVe~ehLllaLl~d~~-~-s~iL~~~g~~~~~ik~~i~~~~~ 168 (1013)
.+..++++..+..+|+.|+..++. +++++|.+ +|||+||++++. . .++|.+.|++...+...+.+-..
T Consensus 74 -~~~~~~~~~~~~~~l~~a~~~~~~-----~~~~~i~~----~~ll~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 143 (758)
T PRK11034 74 -EERDTQPTLSFQRVLQRAVFHVQS-----SGRSEVTG----ANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTR 143 (758)
T ss_pred -CcCCcCCCHHHHHHHHHHHHHHHH-----cCCCcccH----HHHHHHHhcCCcchHHHHHHHcCCCHHHHHHHHHhCCc
Confidence 013467888999999999998886 67787775 999999998765 3 57899999988777555442100
Q ss_pred C--CC-------C--CC---CC----CCC---------CCCCCC--------------CCCCcCCCcccccCCCcccCCC
Q 001788 169 S--SC-------S--VS---NS----SPI---------GLGFRP--------------SSRNLYMNPRLQQAGGVCGGQS 207 (1013)
Q Consensus 169 ~--~~-------~--~~---~~----~~~---------~g~~~p--------------~~r~~~~np~l~~~~~~~vG~~ 207 (1013)
. .. . .. .. ..| .|++|| |+|+.++||+| +|+|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~a~~g~~~~liGR~~ei~~~i~iL~r~~~~n~LL-------vGpp 216 (758)
T PRK11034 144 KDEPSQSSDPGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLL-------VGES 216 (758)
T ss_pred cccccccccccccccccccccchhHHHHHHHhHHHHHHcCCCCcCcCCCHHHHHHHHHHhccCCCCeEE-------ECCC
Confidence 0 00 0 00 00 011 388899 67888999999 9999
Q ss_pred --hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc--ccc--chhhhHHHHHHHHHHHHhhcCCCCceEEEecchhHHHh
Q 001788 208 --EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD--FTC--DKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKWLVE 281 (1013)
Q Consensus 208 --gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~--~~~--~rge~e~r~~~l~~~~~~~~~~~~~~il~idel~~l~~ 281 (1013)
|||++|++++++|..+++|..|.++++++++++ ++| |+|+||+|++.+++++++ .++.||||||||.|++
T Consensus 217 GvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~----~~~~ILfIDEIh~L~g 292 (758)
T PRK11034 217 GVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ----DTNSILFIDEIHTIIG 292 (758)
T ss_pred CCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHh----cCCCEEEeccHHHHhc
Confidence 999999999999999999999999999999988 455 899999999999999987 4688999999999999
Q ss_pred cccccCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEecCHHHHHHhhhcCCCCCCCCCCeeeeccCCCCC
Q 001788 282 QQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATCETYLRCQVYHPSMENDWDLQAVPIAAKTPL 361 (1013)
Q Consensus 282 ~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~IgatT~~~Y~k~~~~~~ale~~~rfq~v~v~e~~~~ 361 (1013)
++.... +.+ |++|+|||++ ++|++.||||||+++|++++++||+| .||||.|.|++ |+.
T Consensus 293 ~g~~~~-------------g~~----d~~nlLkp~L-~~g~i~vIgATt~~E~~~~~~~D~AL--~rRFq~I~v~e-Ps~ 351 (758)
T PRK11034 293 AGAASG-------------GQV----DAANLIKPLL-SSGKIRVIGSTTYQEFSNIFEKDRAL--ARRFQKIDITE-PSI 351 (758)
T ss_pred cCCCCC-------------cHH----HHHHHHHHHH-hCCCeEEEecCChHHHHHHhhccHHH--HhhCcEEEeCC-CCH
Confidence 875311 334 7999999999 89999999999999999999999999 99999999999 887
Q ss_pred C-------CCcccccc-CC--CCchhhhhhccccccchhccccCCCCCCCcCchhhhhhhhHHHHHHHHHHHHHHhhhhh
Q 001788 362 S-------GMFPRLGS-NG--ILSSSVESLSPLKSAFQTTAAALPRRVSENLDPARRMSCCRQCLQNYEQELAKLSKEFE 431 (1013)
Q Consensus 362 ~-------gl~~~~e~-h~--i~d~al~~~v~~~~~~~~~~~~~r~~pd~aid~a~~~~~~~~~~~~~e~e~~~l~~~~~ 431 (1013)
+ |++++||. |+ |++.++..++ .++.+|++ +|++||||||..+. +|.. ..
T Consensus 352 ~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~---~ls~ryi~-~r~lPdKaidllde--a~a~-----------~~---- 410 (758)
T PRK11034 352 EETVQIINGLKPKYEAHHDVRYTAKAVRAAV---ELAVKYIN-DRHLPDKAIDVIDE--AGAR-----------AR---- 410 (758)
T ss_pred HHHHHHHHHHHHHhhhccCCCcCHHHHHHHH---HHhhcccc-CccChHHHHHHHHH--HHHh-----------hc----
Confidence 6 99999999 76 7899999999 99999999 89999999877651 1100 00
Q ss_pred hcccchhhhhccCCchHHHhhhccCCCCcchhhhccchhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCcccccCCC
Q 001788 432 KSSSEVKSEVARPLLPQWLHNAKAHDGDDKTAEQTENKDQDLIWKQKSQELQKKWNDTCLNQHPNFHPSSLGHERIVPVP 511 (1013)
Q Consensus 432 ~~~~~~~~~~~~~~lp~wlq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kw~~~c~~lh~~~~~~~~~~~~~~~~~ 511 (1013)
..| . . .+
T Consensus 411 -------------~~~---------------------~-------~-------------~~------------------- 417 (758)
T PRK11034 411 -------------LMP---------------------V-------S-------------KR------------------- 417 (758)
T ss_pred -------------cCc---------------------c-------c-------------cc-------------------
Confidence 000 0 0 00
Q ss_pred CcccccccccccccCCCCchhhccccccccccccCCCCCCcchhhccCCCCCCceeccccCcccccCCCCCcCCcccccc
Q 001788 512 LSMTGLYNSNLLARQPFQPKVQLNRNLGDTLQLNSNMVSSQPAERAVSPLNSPVRTDLVLGRSKVLESAPEKTHIEPVKD 591 (1013)
Q Consensus 512 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~tdl~lg~~~~s~~~~~~~~~~~i~~ 591 (1013)
.. .++.++|++
T Consensus 418 --------------------------------------------------~~-------------------~v~~~~i~~ 428 (758)
T PRK11034 418 --------------------------------------------------KK-------------------TVNVADIES 428 (758)
T ss_pred --------------------------------------------------cc-------------------ccChhhHHH
Confidence 00 012357889
Q ss_pred ccccccCCCCCCcccccccccCCCCCCHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhhhcC-CCCCCCCCCCceEEE
Q 001788 592 FLGCISSEPPQNKLHESQNDQLQKPLDPDSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLGNG-KRRGAGSKGDMWLLF 670 (1013)
Q Consensus 592 ~~s~~t~~p~~~~~~~~~~~~~~~~~d~e~l~~L~~~L~~~ViGQ~~ai~~I~~ai~~~~~g~~-~~r~~~sk~~~~lLf 670 (1013)
++++|||||+.++.. .+.+.+..|.+.|+++|+||++|++.|..+|.+++.|+. +++|+++ |||
T Consensus 429 v~~~~tgip~~~~~~----------~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~-----~Lf 493 (758)
T PRK11034 429 VVARIARIPEKSVSQ----------SDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGS-----FLF 493 (758)
T ss_pred HHHHHhCCChhhhhh----------hHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHHHhccccCCCCCcce-----EEE
Confidence 999999999998876 578899999999999999999999999999999999885 4566655 999
Q ss_pred eccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCC--------CCcccccccchhhhHHHHHHcCCCEEEEEeCCCCCC
Q 001788 671 MGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHE--------EPEVRVRGKTALDKIGEAVKRNPFSVILLEDIDEAD 742 (1013)
Q Consensus 671 ~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~--------~~~~g~~G~~~~~~L~eal~~~p~~VV~lDEIdka~ 742 (1013)
+||||||||++|++||+.+. .+|+++||++|.+ +.++||+|++.++.|+++++++|++|||||||||+|
T Consensus 494 ~GP~GvGKT~lAk~LA~~l~---~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~ 570 (758)
T PRK11034 494 AGPTGVGKTEVTVQLSKALG---IELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH 570 (758)
T ss_pred ECCCCCCHHHHHHHHHHHhC---CCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhh
Confidence 99999999999999999984 6899999999865 567899999989999999999999999999999999
Q ss_pred HHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhcccccccccc
Q 001788 743 MVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRAS 822 (1013)
Q Consensus 743 ~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~ 822 (1013)
+++|+.|+++|++|+++|..|+.++|+|+|||+|||.|.+.+..... ||. ..+.
T Consensus 571 ~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~---------------g~~--------~~~~--- 624 (758)
T PRK11034 571 PDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSI---------------GLI--------HQDN--- 624 (758)
T ss_pred HHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhccc---------------Ccc--------cchh---
Confidence 99999999999999999999999999999999999988654322110 110 0000
Q ss_pred chhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecC
Q 001788 823 WLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFK 902 (1013)
Q Consensus 823 ~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~ 902 (1013)
..+. . ..+. +.|+|||++|||.+|+|+
T Consensus 625 -------------------~~~~---------------------~-----~~~~--------~~f~pefl~Rid~ii~f~ 651 (758)
T PRK11034 625 -------------------STDA---------------------M-----EEIK--------KIFTPEFRNRLDNIIWFD 651 (758)
T ss_pred -------------------hHHH---------------------H-----HHHH--------HhcCHHHHccCCEEEEcC
Confidence 0000 0 0011 279999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHHHhCCC---CChHHHHHHHHHHHhHHHHHHHHcCCCCC
Q 001788 903 PVDFGRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLVGGVW---LGRTGLEDWTEKVLVPSLHQLKLRLPNNA 975 (1013)
Q Consensus 903 Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~~~~~---~gar~l~~~ie~~l~~~l~~~~~~~~~~~ 975 (1013)
||+.+++.+|+...|.++.+++..+++.|.++++++++|+..+| +|+|+|+++|++.+.++|++.++.....+
T Consensus 652 ~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~il~~~~~~ 727 (758)
T PRK11034 652 HLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVD 727 (758)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHHHhCcccC
Confidence 99999999999999999988988889999999999999999987 79999999999999999999999876663
No 9
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.97 E-value=7.4e-30 Score=292.73 Aligned_cols=284 Identities=15% Similarity=0.154 Sum_probs=202.8
Q ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHhhhhcCC--CCCC---CCCCCceEEEeccCCCccchHHHHHHHHhcCCCCce
Q 001788 622 FKRLLKSLMEKVWWQQEAASAVATTVTQCKLGNGK--RRGA---GSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIM 696 (1013)
Q Consensus 622 l~~L~~~L~~~ViGQ~~ai~~I~~ai~~~~~g~~~--~r~~---~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~ 696 (1013)
...+++.|.+.|+||++|++.++.++.+++.++.. ..+. .......+||.||||||||++|++||+.+. .+|
T Consensus 68 p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~---~pf 144 (413)
T TIGR00382 68 PKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN---VPF 144 (413)
T ss_pred HHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC---CCe
Confidence 46788999999999999999999999888777532 1110 001234699999999999999999999885 688
Q ss_pred eeeCCCCCCCCCcccccccchhhhHHHHHHcCC-------CEEEEEeCCCCCCH--------------HHHHHHHHHHHc
Q 001788 697 IPLGPRRDHEEPEVRVRGKTALDKIGEAVKRNP-------FSVILLEDIDEADM--------------VVRGNIKRAMER 755 (1013)
Q Consensus 697 i~id~s~~~~~~~~g~~G~~~~~~L~eal~~~p-------~~VV~lDEIdka~~--------------~vq~~LL~~le~ 755 (1013)
+.++++.+ .++||+|++..+.+.+.++..+ .+|||||||||+++ .+|+.||++| +
T Consensus 145 ~~~da~~L---~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iL-e 220 (413)
T TIGR00382 145 AIADATTL---TEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKII-E 220 (413)
T ss_pred EEechhhc---cccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHh-h
Confidence 88888764 3467999987777777665444 36899999999997 6999999999 5
Q ss_pred ceEec---CCCeEeecCceEEEEecCCCCcchhhcccccchhhhhhhhh----ccchhhhHhhhccccccccccchhhhh
Q 001788 756 GRLVD---SYGREISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSL----ASGEWQLRLSIRGKTTKRRASWLDEEE 828 (1013)
Q Consensus 756 G~l~d---~~g~~vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~----~~~~~~l~~~~~~~~~krk~~~~~~~~ 828 (1013)
|.+++ .+|+.+++.++|+|+|||+..-....+ . +-++++.. ...||..+ .+. .
T Consensus 221 G~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf-~----g~~~i~~~r~~~~~~gf~~~-------~~~-~------- 280 (413)
T TIGR00382 221 GTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAF-V----GLEKIIKKRTGKSSIGFGAE-------VKK-K------- 280 (413)
T ss_pred ccceecccCCCccccCCCeEEEEcCCceeeecccc-c----ChHHHHHHHhhhcccccccc-------ccc-c-------
Confidence 99876 678999999999999999842110000 0 00111100 00011000 000 0
Q ss_pred hccccccccCCCcccchhhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhh
Q 001788 829 RSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGR 908 (1013)
Q Consensus 829 ~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~ 908 (1013)
.. +. .+ ..+......+.++ .|.|||++|+|.+++|+||+.++
T Consensus 281 ---~~----------~~----------------~~--~~~~~~~~dl~~~-------g~~PEflgRld~Iv~f~pL~~~~ 322 (413)
T TIGR00382 281 ---SK----------EK----------------AD--LLRQVEPEDLVKF-------GLIPEFIGRLPVIATLEKLDEEA 322 (413)
T ss_pred ---ch----------hh----------------HH--HHHHHHHHHHHHH-------hhHHHHhCCCCeEeecCCCCHHH
Confidence 00 00 00 0000000112221 69999999999999999999999
Q ss_pred HHHHHHHHH----HHHHHHhhcCCcceecCHHHHHHHHhCCC---CChHHHHHHHHHHHhHHHHHHHHc
Q 001788 909 IRRDVTNAI----TKKFSSIIGDALSIEILDEALEKLVGGVW---LGRTGLEDWTEKVLVPSLHQLKLR 970 (1013)
Q Consensus 909 l~~ii~~~l----~~~~~~~~~~~~~L~id~~a~~~L~~~~~---~gar~l~~~ie~~l~~~l~~~~~~ 970 (1013)
+.+|+...+ .++.+.+...++.|.++++++++|++.+| +|||+|++.|++.+.+.|.++...
T Consensus 323 L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~p~~ 391 (413)
T TIGR00382 323 LIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDLPSL 391 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhCCCC
Confidence 999999753 34444555579999999999999999987 799999999999999999997543
No 10
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.96 E-value=6.1e-28 Score=278.54 Aligned_cols=286 Identities=16% Similarity=0.175 Sum_probs=197.2
Q ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHhhhhcCCC-C---CCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCcee
Q 001788 622 FKRLLKSLMEKVWWQQEAASAVATTVTQCKLGNGKR-R---GAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMI 697 (1013)
Q Consensus 622 l~~L~~~L~~~ViGQ~~ai~~I~~ai~~~~~g~~~~-r---~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i 697 (1013)
.+.+.+.|.+.|+||++|++.++.++..+....... + +.. .+...+||+||||||||++|++||+.+. .+|+
T Consensus 62 p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~-~~~~~iLl~Gp~GtGKT~lAr~lA~~l~---~pf~ 137 (412)
T PRK05342 62 PKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVE-LQKSNILLIGPTGSGKTLLAQTLARILD---VPFA 137 (412)
T ss_pred HHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccc-cCCceEEEEcCCCCCHHHHHHHHHHHhC---CCce
Confidence 467888999999999999999999987664443211 0 110 1234599999999999999999999885 7999
Q ss_pred eeCCCCCCCCCcccccccchhhhHHHHH-------HcCCCEEEEEeCCCCCCH--------------HHHHHHHHHHHcc
Q 001788 698 PLGPRRDHEEPEVRVRGKTALDKIGEAV-------KRNPFSVILLEDIDEADM--------------VVRGNIKRAMERG 756 (1013)
Q Consensus 698 ~id~s~~~~~~~~g~~G~~~~~~L~eal-------~~~p~~VV~lDEIdka~~--------------~vq~~LL~~le~G 756 (1013)
.+|++.+.. +||+|.+....+...+ ...+++||||||||++++ .+|+.||++||.+
T Consensus 138 ~id~~~l~~---~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~ 214 (412)
T PRK05342 138 IADATTLTE---AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGT 214 (412)
T ss_pred ecchhhccc---CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcC
Confidence 999987543 4798887655554433 345678999999999976 3999999999754
Q ss_pred e--EecCCCeEeecCceEEEEecCCCCcchhhcccccchhhhhhhhh----ccchhhhHhhhccccccccccchhhhhhc
Q 001788 757 R--LVDSYGREISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSL----ASGEWQLRLSIRGKTTKRRASWLDEEERS 830 (1013)
Q Consensus 757 ~--l~d~~g~~vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~----~~~~~~l~~~~~~~~~krk~~~~~~~~~~ 830 (1013)
. +++.+|+..++.+.++|+|+|+..-. . |....-++++.. ...||..+. +.+.
T Consensus 215 ~~~v~~~gg~~~~~~~~~~i~t~nilfi~-~----Gaf~g~~~~~~~r~~~~~~gf~~~~-------~~~~--------- 273 (412)
T PRK05342 215 VASVPPQGGRKHPQQEFIQVDTTNILFIC-G----GAFDGLEKIIKQRLGKKGIGFGAEV-------KSKK--------- 273 (412)
T ss_pred eEEeCCCCCcCcCCCCeEEeccCCceeee-c----ccccCcHHHHHHHHhhcccCCcccc-------cccc---------
Confidence 3 35668899999999999999983210 0 000000111100 011111000 0000
Q ss_pred cccccccCCCcccchhhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHH
Q 001788 831 TKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIR 910 (1013)
Q Consensus 831 ~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~ 910 (1013)
..+. ...+ . +...-..+.+. .|.|||++|+|.+|+|+||+.+++.
T Consensus 274 --~~~~-----~~~~--------------------~-~~~~~~dL~~~-------gf~PEflgRld~iv~f~~L~~~~L~ 318 (412)
T PRK05342 274 --EKRT-----EGEL--------------------L-KQVEPEDLIKF-------GLIPEFIGRLPVVATLEELDEEALV 318 (412)
T ss_pred --ccch-----hHHH--------------------H-HhcCHHHHHHH-------hhhHHHhCCCCeeeecCCCCHHHHH
Confidence 0000 0000 0 00000111111 5899999999999999999999999
Q ss_pred HHHHH----HHHHHHHHhhcCCcceecCHHHHHHHHhCCC---CChHHHHHHHHHHHhHHHHHHHHc
Q 001788 911 RDVTN----AITKKFSSIIGDALSIEILDEALEKLVGGVW---LGRTGLEDWTEKVLVPSLHQLKLR 970 (1013)
Q Consensus 911 ~ii~~----~l~~~~~~~~~~~~~L~id~~a~~~L~~~~~---~gar~l~~~ie~~l~~~l~~~~~~ 970 (1013)
+|+.. .+.++.+.+...++.|.++++++++|++.+| +|+|+|+++|++.+.+.+.++...
T Consensus 319 ~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~p~~ 385 (412)
T PRK05342 319 RILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFELPSR 385 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhcccc
Confidence 99985 4444555555679999999999999999987 799999999999999999887743
No 11
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=5.6e-23 Score=220.01 Aligned_cols=283 Identities=17% Similarity=0.210 Sum_probs=190.0
Q ss_pred HHHHHHHhccccccHHHHHHHHHHHHHhhhhcCCC---CCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeee
Q 001788 623 KRLLKSLMEKVWWQQEAASAVATTVTQCKLGNGKR---RGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPL 699 (1013)
Q Consensus 623 ~~L~~~L~~~ViGQ~~ai~~I~~ai~~~~~g~~~~---r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~i 699 (1013)
+.+++.|.+.||||+.|.+.++.++.+++..+... ..+. -....+|+.||+|+|||.||++||+.|. .||.-.
T Consensus 53 ~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvE-L~KSNILLiGPTGsGKTlLAqTLAk~Ln---VPFaiA 128 (408)
T COG1219 53 KEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVE-LSKSNILLIGPTGSGKTLLAQTLAKILN---VPFAIA 128 (408)
T ss_pred HHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCcee-eeeccEEEECCCCCcHHHHHHHHHHHhC---CCeeec
Confidence 56788899999999999999999999887654321 1110 0112399999999999999999999997 888888
Q ss_pred CCCCCCCCCcccccccchhhhHHHHHHcCC-------CEEEEEeCCCCCC--------------HHHHHHHHHHHHcceE
Q 001788 700 GPRRDHEEPEVRVRGKTALDKIGEAVKRNP-------FSVILLEDIDEAD--------------MVVRGNIKRAMERGRL 758 (1013)
Q Consensus 700 d~s~~~~~~~~g~~G~~~~~~L~eal~~~p-------~~VV~lDEIdka~--------------~~vq~~LL~~le~G~l 758 (1013)
|+.... ..||+|.+...-+...+.... .+||+||||||.. ..||..||++|| |.+
T Consensus 129 DATtLT---EAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiE-GTv 204 (408)
T COG1219 129 DATTLT---EAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIE-GTV 204 (408)
T ss_pred cccchh---hccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHc-Cce
Confidence 887643 458999988776666655443 4689999999974 359999999996 543
Q ss_pred ---ecCCCeEeecCceEEEEecCCCCcchhhcccccchhhhhhhhh----ccchhhhHhhhccccccccccchhhhhhcc
Q 001788 759 ---VDSYGREISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSL----ASGEWQLRLSIRGKTTKRRASWLDEEERST 831 (1013)
Q Consensus 759 ---~d~~g~~vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~----~~~~~~l~~~~~~~~~krk~~~~~~~~~~~ 831 (1013)
...+||+-.....|-|-|||+..= .. |.+-+-+++..- ...||+-+ .+..
T Consensus 205 asVPPqGGRKHP~Qe~iqvDT~NILFI-cg----GAF~GlekiI~~R~~~~~iGF~a~------------------~~~~ 261 (408)
T COG1219 205 ASVPPQGGRKHPQQEFIQVDTSNILFI-CG----GAFAGLEKIIKKRLGKKGIGFGAE------------------VKSK 261 (408)
T ss_pred eccCCCCCCCCCccceEEEcccceeEE-ec----cccccHHHHHHHhccCCccccccc------------------ccch
Confidence 345666544444444444443210 00 011112233211 11122100 0000
Q ss_pred ccccccCCCcccchhhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHH
Q 001788 832 KPRKETGSGLSFDLNKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRR 911 (1013)
Q Consensus 832 ~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ 911 (1013)
+..++ ... ....++-.++.+. .+.|||++|+..+..+.+|+.+++.+
T Consensus 262 ~~~~~--------~~~------------------~l~~vepeDLvkF-------GLIPEfIGRlPvia~L~~Lde~aLv~ 308 (408)
T COG1219 262 SKKKE--------EGE------------------LLKQVEPEDLVKF-------GLIPEFIGRLPVIATLEELDEDALVQ 308 (408)
T ss_pred hhhhh--------HHH------------------HHHhcChHHHHHc-------CCcHHHhcccceeeehhhcCHHHHHH
Confidence 00000 000 0000111122221 78999999999999999999999999
Q ss_pred HHHH---HHHHHHHHhhc-CCcceecCHHHHHHHHhCCC---CChHHHHHHHHHHHhHHHHHHHH
Q 001788 912 DVTN---AITKKFSSIIG-DALSIEILDEALEKLVGGVW---LGRTGLEDWTEKVLVPSLHQLKL 969 (1013)
Q Consensus 912 ii~~---~l~~~~~~~~~-~~~~L~id~~a~~~L~~~~~---~gar~l~~~ie~~l~~~l~~~~~ 969 (1013)
|+.. .|-+.+++++. .++.|+|+++|++.|+..+. +|||.|+.+||..+.+.|.++-.
T Consensus 309 ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLRsI~E~~lld~MfelPs 373 (408)
T COG1219 309 ILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLRSIIEELLLDVMFELPS 373 (408)
T ss_pred HHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhCCC
Confidence 9983 55555555555 58999999999999999885 89999999999999999988643
No 12
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.88 E-value=4.2e-23 Score=212.06 Aligned_cols=120 Identities=31% Similarity=0.493 Sum_probs=94.6
Q ss_pred CCCceEEEeccCCCccchHHHHHHHHhc-CCCCceeeeCCCCCCCCCcccccccchhhhHHH----HHHcCCCEEEEEeC
Q 001788 663 KGDMWLLFMGPDRVGKKKMASALSELVS-GASPIMIPLGPRRDHEEPEVRVRGKTALDKIGE----AVKRNPFSVILLED 737 (1013)
Q Consensus 663 k~~~~lLf~Gp~GvGKT~lAr~LA~~l~-~~~~~~i~id~s~~~~~~~~g~~G~~~~~~L~e----al~~~p~~VV~lDE 737 (1013)
||..+|+|+||+|||||++|++||+.++ +...+++.+||++|..+... ......+.. .+...++.||||||
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~----~~~~~~l~~~~~~~v~~~~~gVVllDE 76 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDV----ESSVSKLLGSPPGYVGAEEGGVVLLDE 76 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHC----SCHCHHHHHHTTCHHHHHHHTEEEEET
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchH----HhhhhhhhhcccceeeccchhhhhhHH
Confidence 3456799999999999999999999999 89999999999998761000 000011110 11122234999999
Q ss_pred CCCCCH-----------HHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchhh
Q 001788 738 IDEADM-----------VVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLKF 786 (1013)
Q Consensus 738 Idka~~-----------~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~~ 786 (1013)
|||+|+ .+|+.||++||+|++++..|+.++++|+|||||||.+......
T Consensus 77 idKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~~~~~ 136 (171)
T PF07724_consen 77 IDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAEEIID 136 (171)
T ss_dssp GGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTHHHHH
T ss_pred HhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccchhhh
Confidence 999999 9999999999999999999999999999999999998765443
No 13
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.7e-21 Score=213.92 Aligned_cols=287 Identities=18% Similarity=0.248 Sum_probs=186.2
Q ss_pred HHHHHHHhccccccHHHHHHHHHHHHHhhhhcCC--------------C-----CC----------------------CC
Q 001788 623 KRLLKSLMEKVWWQQEAASAVATTVTQCKLGNGK--------------R-----RG----------------------AG 661 (1013)
Q Consensus 623 ~~L~~~L~~~ViGQ~~ai~~I~~ai~~~~~g~~~--------------~-----r~----------------------~~ 661 (1013)
+.+++.|.+.||||+.|.+.++.++++++..+.. . +| +.
T Consensus 137 keI~~~Ldk~VVGQe~AKKvLsVAVYnHYkRI~hn~~s~~~~~a~~s~~~~~~~~P~~~~~~~~~a~~~~~~r~~~~~ld 216 (564)
T KOG0745|consen 137 KEICEYLDKFVVGQEKAKKVLSVAVYNHYKRIYHNEPSRQKELAEASKSAKDRDNPIELEISESNAQWPNNQRQIAKALD 216 (564)
T ss_pred HHHHHHhhhheechhhhhheeeehhhHHHHHHhcchHHHHHHHhhhhhcccCCCCcccccccccccccccccchhccccc
Confidence 6789999999999999999999888765432211 0 00 00
Q ss_pred CC------CCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccccccchhhhHHHHHHc-------C
Q 001788 662 SK------GDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKR-------N 728 (1013)
Q Consensus 662 sk------~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~-------~ 728 (1013)
.. ....+|++||+|+|||.||+.||+.+. .||+-.||... ...||+|.+....|...+.. .
T Consensus 217 ~~~~dv~LeKSNvLllGPtGsGKTllaqTLAr~ld---VPfaIcDcTtL---TQAGYVGeDVEsvi~KLl~~A~~nVekA 290 (564)
T KOG0745|consen 217 EDDEDVELEKSNVLLLGPTGSGKTLLAQTLARVLD---VPFAICDCTTL---TQAGYVGEDVESVIQKLLQEAEYNVEKA 290 (564)
T ss_pred ccccceeeecccEEEECCCCCchhHHHHHHHHHhC---CCeEEecccch---hhcccccccHHHHHHHHHHHccCCHHHH
Confidence 00 013489999999999999999999997 89999999874 34589999876655555443 3
Q ss_pred CCEEEEEeCCCCCC--------------HHHHHHHHHHHHcceEecC--CC---------eEeecCceEEEEecCCCCcc
Q 001788 729 PFSVILLEDIDEAD--------------MVVRGNIKRAMERGRLVDS--YG---------REISLGNVIFILTADWLPDS 783 (1013)
Q Consensus 729 p~~VV~lDEIdka~--------------~~vq~~LL~~le~G~l~d~--~g---------~~vd~~n~iiI~TSN~g~~~ 783 (1013)
..+|||||||||+. ..||..||+++| |.+... +| -.+|.+|.+||+.--
T Consensus 291 QqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllE-GtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGA----- 364 (564)
T KOG0745|consen 291 QQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLE-GTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGA----- 364 (564)
T ss_pred hcCeEEEehhhhhcccCccccccccccchhHHHHHHHHhc-ccEEcccCCCCCCCCCCCeEEEeccceEEEeccc-----
Confidence 34799999999975 359999999995 555533 11 145666655554421
Q ss_pred hhhcccccchhhhhhhhh----ccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCCCCCCCC
Q 001788 784 LKFLSQGITLDEKKLTSL----ASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSH 859 (1013)
Q Consensus 784 ~~~~~~~~~~~e~~~~~~----~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~ 859 (1013)
+. +-++++.. .+-||+.. +....|. ....+ ++...|--... .--..-
T Consensus 365 F~--------~Ldk~I~rR~~d~slGFg~~----s~~~vr~----------~~~~~---s~~~~~~~~~~----~lL~~~ 415 (564)
T KOG0745|consen 365 FV--------GLDKIISRRLDDKSLGFGAP----SSKGVRA----------NMATK---SGVENDAEKRD----ELLEKV 415 (564)
T ss_pred cc--------chHHHHHHhhcchhcccCCC----CCccchh----------hcccc---cCcchhHHHHH----HHHhhc
Confidence 11 11222110 11122210 0000000 00000 00000000000 000000
Q ss_pred CCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHH---HHHHHHHHhhc-CCcceecCH
Q 001788 860 NSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTN---AITKKFSSIIG-DALSIEILD 935 (1013)
Q Consensus 860 ~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~---~l~~~~~~~~~-~~~~L~id~ 935 (1013)
.+.|+... .+.|||.+|+..+|+|.+|++++|.+|+.. .|-+..+.+++ .++.|.|++
T Consensus 416 ~~~DLisf------------------GmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~~Qyk~lf~~~nV~L~fTe 477 (564)
T KOG0745|consen 416 ESGDLISF------------------GMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALGKQYKKLFGMDNVELHFTE 477 (564)
T ss_pred cccchhhh------------------cCcHHHhcccceEeeccccCHHHHHHHHhcchhhHHHHHHHHhccCCeeEEecH
Confidence 12222221 789999999999999999999999999983 55555666665 489999999
Q ss_pred HHHHHHHhCCC---CChHHHHHHHHHHHhHHHHHHH
Q 001788 936 EALEKLVGGVW---LGRTGLEDWTEKVLVPSLHQLK 968 (1013)
Q Consensus 936 ~a~~~L~~~~~---~gar~l~~~ie~~l~~~l~~~~ 968 (1013)
+|++.|+..+. +|||.|+.++|+.|+.++.++-
T Consensus 478 ~Al~~IAq~Al~r~TGARgLRsIlE~~LleamfevP 513 (564)
T KOG0745|consen 478 KALEAIAQLALKRKTGARGLRSILESLLLEAMFEVP 513 (564)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHhhhcccCC
Confidence 99999999885 8999999999999999988754
No 14
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.86 E-value=3.6e-21 Score=217.75 Aligned_cols=221 Identities=18% Similarity=0.200 Sum_probs=175.0
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCC-c
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEP-E 709 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~-~ 709 (1013)
..|||++.|+..+...|..-.. .+..+|+.|+|||||..+||+||+...+...|||.+||+-..+.- .
T Consensus 223 ~~iIG~S~am~~ll~~i~~VA~-----------Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlE 291 (550)
T COG3604 223 GGIIGRSPAMRQLLKEIEVVAK-----------SDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLE 291 (550)
T ss_pred ccceecCHHHHHHHHHHHHHhc-----------CCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHH
Confidence 4589999999999998864332 233499999999999999999999999999999999998765431 1
Q ss_pred ccccccchhhhHHHHHHcCCC-------EEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCc
Q 001788 710 VRVRGKTALDKIGEAVKRNPF-------SVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPD 782 (1013)
Q Consensus 710 ~g~~G~~~~~~L~eal~~~p~-------~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~ 782 (1013)
+..+||+ .|.+++|+..+++ +.+|||||..++..+|..||+++++|.|...+|...-.-++.||++||.
T Consensus 292 SELFGHe-KGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNR--- 367 (550)
T COG3604 292 SELFGHE-KGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNR--- 367 (550)
T ss_pred HHHhccc-ccccccchhccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccch---
Confidence 2467874 5678888887664 5699999999999999999999999999988875444445559999984
Q ss_pred chhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCC
Q 001788 783 SLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSS 862 (1013)
Q Consensus 783 ~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~s 862 (1013)
||...+.++
T Consensus 368 -------------------------------------------------------------DL~~~V~~G---------- 376 (550)
T COG3604 368 -------------------------------------------------------------DLEEMVRDG---------- 376 (550)
T ss_pred -------------------------------------------------------------hHHHHHHcC----------
Confidence 222222111
Q ss_pred CcccccccccccccccccCCCCCCChhhHHhhhccceec-CCCC--hhhHHHHHHHHHHHHHHHhhcCCc-ceecCHHHH
Q 001788 863 DLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVF-KPVD--FGRIRRDVTNAITKKFSSIIGDAL-SIEILDEAL 938 (1013)
Q Consensus 863 d~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F-~Pl~--~~~l~~ii~~~l~~~~~~~~~~~~-~L~id~~a~ 938 (1013)
.|+.+|++||+.+-.+ .||. .+|+.-++..++.+...++ |. .+.++++|+
T Consensus 377 -----------------------~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~---gr~~l~ls~~Al 430 (550)
T COG3604 377 -----------------------EFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRL---GRAILSLSAEAL 430 (550)
T ss_pred -----------------------cchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhc---CCcccccCHHHH
Confidence 7999999999543333 3666 5888888888887766654 55 789999999
Q ss_pred HHHHhCCCCCh-HHHHHHHHHHHhHH
Q 001788 939 EKLVGGVWLGR-TGLEDWTEKVLVPS 963 (1013)
Q Consensus 939 ~~L~~~~~~ga-r~l~~~ie~~l~~~ 963 (1013)
+.|..+.|+|| |+|++.|++.+.-.
T Consensus 431 ~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 431 ELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 99999999999 99999999987754
No 15
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.86 E-value=8.1e-21 Score=218.74 Aligned_cols=219 Identities=16% Similarity=0.179 Sum_probs=171.5
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCc-
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPE- 709 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~- 709 (1013)
..++|++.+|..+...+.+...... .+|+.|++||||..+||+||+...+...|||.+||.......-
T Consensus 141 ~~liG~S~am~~l~~~i~kvA~s~a-----------~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~E 209 (464)
T COG2204 141 GELVGESPAMQQLRRLIAKVAPSDA-----------SVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLE 209 (464)
T ss_pred CCceecCHHHHHHHHHHHHHhCCCC-----------CEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHH
Confidence 4689999999999999986654322 2999999999999999999999998899999999986543211
Q ss_pred ccccccchhhhHHHHHHc-------CCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCc
Q 001788 710 VRVRGKTALDKIGEAVKR-------NPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPD 782 (1013)
Q Consensus 710 ~g~~G~~~~~~L~eal~~-------~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~ 782 (1013)
.-++||+ .|.++++..+ ..++.+|||||..|+.++|..||+++++|.++..+|...--.|+.||.+||..
T Consensus 210 SELFGhe-kGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~d-- 286 (464)
T COG2204 210 SELFGHE-KGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRD-- 286 (464)
T ss_pred HHhhccc-ccCcCCcccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcC--
Confidence 1366775 3445665544 34578999999999999999999999999999988865444566699999841
Q ss_pred chhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCC
Q 001788 783 SLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSS 862 (1013)
Q Consensus 783 ~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~s 862 (1013)
|-..+++
T Consensus 287 --------------------------------------------------------------L~~~v~~----------- 293 (464)
T COG2204 287 --------------------------------------------------------------LEEEVAA----------- 293 (464)
T ss_pred --------------------------------------------------------------HHHHHHc-----------
Confidence 1111111
Q ss_pred CcccccccccccccccccCCCCCCChhhHHhhhccceec--CCCC--hhhHHHHHHHHHHHHHHHhhcCCcceecCHHHH
Q 001788 863 DLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVF--KPVD--FGRIRRDVTNAITKKFSSIIGDALSIEILDEAL 938 (1013)
Q Consensus 863 d~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F--~Pl~--~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~ 938 (1013)
+.|+++|++|+ ++|++ .||. .+||.-++..++.+...+.. .-...|+++++
T Consensus 294 ----------------------G~FReDLyyRL-nV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~--~~~~~~s~~a~ 348 (464)
T COG2204 294 ----------------------GRFREDLYYRL-NVVPLRLPPLRERKEDIPLLAEHFLKRFAAELG--RPPKGFSPEAL 348 (464)
T ss_pred ----------------------CCcHHHHHhhh-ccceecCCcccccchhHHHHHHHHHHHHHHHcC--CCCCCCCHHHH
Confidence 27999999999 44444 3676 69999999999988776642 22458999999
Q ss_pred HHHHhCCCCCh-HHHHHHHHHHHh
Q 001788 939 EKLVGGVWLGR-TGLEDWTEKVLV 961 (1013)
Q Consensus 939 ~~L~~~~~~ga-r~l~~~ie~~l~ 961 (1013)
+.|..+.|+|| |+|++.+++.+.
T Consensus 349 ~~L~~y~WPGNVREL~N~ver~~i 372 (464)
T COG2204 349 AALLAYDWPGNVRELENVVERAVI 372 (464)
T ss_pred HHHHhCCCChHHHHHHHHHHHHHh
Confidence 99999999999 999999998764
No 16
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.2e-19 Score=207.63 Aligned_cols=123 Identities=9% Similarity=0.176 Sum_probs=99.0
Q ss_pred cCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc--cccchhhhHHHHHHHHHHHHhhcCCCCceEEEecchhHH
Q 001788 204 GGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD--FTCDKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKWL 279 (1013)
Q Consensus 204 vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~--~~~~rge~e~r~~~l~~~~~~~~~~~~~~il~idel~~l 279 (1013)
=|+| |||.++.++|.. -++-++++... ++|+-||-|+||.+|++.+.+ ..+.|+|||||..+
T Consensus 229 HGPPGCGKT~lA~AiAge----------l~vPf~~isApeivSGvSGESEkkiRelF~~A~~----~aPcivFiDeIDAI 294 (802)
T KOG0733|consen 229 HGPPGCGKTSLANAIAGE----------LGVPFLSISAPEIVSGVSGESEKKIRELFDQAKS----NAPCIVFIDEIDAI 294 (802)
T ss_pred eCCCCccHHHHHHHHhhh----------cCCceEeecchhhhcccCcccHHHHHHHHHHHhc----cCCeEEEeeccccc
Confidence 7999 999999988865 56669999988 478999999999999999998 58999999999999
Q ss_pred HhcccccCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCC----CceEEEEecCHHHHHHhhhcCCCCCCCCCC-eeee
Q 001788 280 VEQQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGGG----GRLWLIGTATCETYLRCQVYHPSMENDWDL-QAVP 354 (1013)
Q Consensus 280 ~~~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~~----g~~~~IgatT~~~Y~k~~~~~~ale~~~rf-q~v~ 354 (1013)
.+....+ .-+-..++|+++-+.|.... .. -.|-+||||+.-. ..||+|...-|| +-|-
T Consensus 295 ~pkRe~a-----------qreMErRiVaQLlt~mD~l~-~~~~~g~~VlVIgATnRPD-----slDpaLRRaGRFdrEI~ 357 (802)
T KOG0733|consen 295 TPKREEA-----------QREMERRIVAQLLTSMDELS-NEKTKGDPVLVIGATNRPD-----SLDPALRRAGRFDREIC 357 (802)
T ss_pred ccchhhH-----------HHHHHHHHHHHHHHhhhccc-ccccCCCCeEEEecCCCCc-----ccCHHHhccccccceee
Confidence 8876431 14677899999999998766 33 3699999998733 467888777777 3444
Q ss_pred ccC
Q 001788 355 IAA 357 (1013)
Q Consensus 355 v~e 357 (1013)
+.-
T Consensus 358 l~v 360 (802)
T KOG0733|consen 358 LGV 360 (802)
T ss_pred ecC
Confidence 444
No 17
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.84 E-value=2e-20 Score=212.13 Aligned_cols=237 Identities=18% Similarity=0.268 Sum_probs=173.8
Q ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHh--hhhcCCC--CCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCcee
Q 001788 622 FKRLLKSLMEKVWWQQEAASAVATTVTQC--KLGNGKR--RGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMI 697 (1013)
Q Consensus 622 l~~L~~~L~~~ViGQ~~ai~~I~~ai~~~--~~g~~~~--r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i 697 (1013)
.+.+.+.|.+.|+||++|++.++.++..+ +.++.+. .++. ...+||+||||||||++|++||+.+. .+|+
T Consensus 6 p~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~---~~~ILliGp~G~GKT~LAr~LAk~l~---~~fi 79 (443)
T PRK05201 6 PREIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVT---PKNILMIGPTGVGKTEIARRLAKLAN---APFI 79 (443)
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccC---CceEEEECCCCCCHHHHHHHHHHHhC---Chhe
Confidence 36688899999999999999999999764 2222211 1111 12399999999999999999999985 8999
Q ss_pred eeCCCCCCCCCcccccccchhh---h------------------------------------------------------
Q 001788 698 PLGPRRDHEEPEVRVRGKTALD---K------------------------------------------------------ 720 (1013)
Q Consensus 698 ~id~s~~~~~~~~g~~G~~~~~---~------------------------------------------------------ 720 (1013)
++|++.|.+. ||+|.+... .
T Consensus 80 ~vD~t~f~e~---GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r 156 (443)
T PRK05201 80 KVEATKFTEV---GYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATR 156 (443)
T ss_pred eecchhhccC---CcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHH
Confidence 9999877541 233322100 0
Q ss_pred --------------------------------------------------------------------------------
Q 001788 721 -------------------------------------------------------------------------------- 720 (1013)
Q Consensus 721 -------------------------------------------------------------------------------- 720 (1013)
T Consensus 157 ~~~~~~l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~ 236 (443)
T PRK05201 157 QKFRKKLREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDM 236 (443)
T ss_pred HHHHHHHHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccCh
Confidence
Q ss_pred ---HHHHHHc-CCCEEEEEeCCCCCC------------HHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcch
Q 001788 721 ---IGEAVKR-NPFSVILLEDIDEAD------------MVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSL 784 (1013)
Q Consensus 721 ---L~eal~~-~p~~VV~lDEIdka~------------~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~ 784 (1013)
..+++.. ...+|||||||||.. ..||..||++||.-.+.. +-..++..|..||++--.
T Consensus 237 ~~v~~~ai~~ae~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~-k~~~i~T~~ILFI~~GAF----- 310 (443)
T PRK05201 237 EEIKQEAIERVEQNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVST-KYGMVKTDHILFIASGAF----- 310 (443)
T ss_pred HHHHHHHHHHHHcCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeee-cceeEECCceeEEecCCc-----
Confidence 0112222 245799999999975 249999999997555543 334788888888876420
Q ss_pred hhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCCCc
Q 001788 785 KFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDL 864 (1013)
Q Consensus 785 ~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd~ 864 (1013)
.. .+
T Consensus 311 ~~-----------------------------------------------~k----------------------------- 314 (443)
T PRK05201 311 HV-----------------------------------------------SK----------------------------- 314 (443)
T ss_pred CC-----------------------------------------------CC-----------------------------
Confidence 00 00
Q ss_pred ccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHH----HHHHHHHHhhcCCcceecCHHHHHH
Q 001788 865 TVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTN----AITKKFSSIIGDALSIEILDEALEK 940 (1013)
Q Consensus 865 ~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~----~l~~~~~~~~~~~~~L~id~~a~~~ 940 (1013)
| ..+.|||++|+..+|.+.||+.+++.+|+.. .+.++...+...|+.|.|+++|+++
T Consensus 315 -----------------p--~DlIPEl~GR~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~ 375 (443)
T PRK05201 315 -----------------P--SDLIPELQGRFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRR 375 (443)
T ss_pred -----------------h--hhccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHH
Confidence 0 1467899999999999999999999999963 4555555555679999999999999
Q ss_pred HHhCCC--------CChHHHHHHHHHHHhHHHHHHH
Q 001788 941 LVGGVW--------LGRTGLEDWTEKVLVPSLHQLK 968 (1013)
Q Consensus 941 L~~~~~--------~gar~l~~~ie~~l~~~l~~~~ 968 (1013)
||..++ .|||.|+..+|++|...+.++-
T Consensus 376 IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~~Fe~p 411 (443)
T PRK05201 376 IAEIAYQVNEKTENIGARRLHTVMEKLLEDISFEAP 411 (443)
T ss_pred HHHHHHHhcccccccchhhHHHHHHHHHHHHhccCC
Confidence 999874 5899999999999998887653
No 18
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.83 E-value=5.4e-20 Score=211.13 Aligned_cols=219 Identities=19% Similarity=0.205 Sum_probs=169.6
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCC-c
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEP-E 709 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~-~ 709 (1013)
+.|+|.+.++..+...+.+.. +.+..+|+.|++||||..+|++||+...+.+.|||.+||.-..+.. .
T Consensus 245 ~~Iig~S~~m~~~~~~akr~A-----------~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlE 313 (560)
T COG3829 245 DDIIGESPAMLRVLELAKRIA-----------KTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLE 313 (560)
T ss_pred hhhccCCHHHHHHHHHHHhhc-----------CCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHH
Confidence 368999998888777665443 2233499999999999999999999999999999999998654311 1
Q ss_pred ccccccchhhhHHHHHHc-CC-------CEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCC
Q 001788 710 VRVRGKTALDKIGEAVKR-NP-------FSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLP 781 (1013)
Q Consensus 710 ~g~~G~~~~~~L~eal~~-~p-------~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~ 781 (1013)
+-++||+ .|.+++|.+. +| ++.||||||..|+...|..||++++++.+..-+|...--.++.||++||.-.
T Consensus 314 SELFGye-~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL 392 (560)
T COG3829 314 SELFGYE-KGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNL 392 (560)
T ss_pred HHHhCcC-CccccccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCH
Confidence 2356774 5567777764 33 3579999999999999999999999999998877544444455999999421
Q ss_pred cchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCCCCCCCCCC
Q 001788 782 DSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNS 861 (1013)
Q Consensus 782 ~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~ 861 (1013)
. ..+++
T Consensus 393 ~----------------------------------------------------------------~~i~~---------- 398 (560)
T COG3829 393 E----------------------------------------------------------------KMIAE---------- 398 (560)
T ss_pred H----------------------------------------------------------------HHHhc----------
Confidence 1 11111
Q ss_pred CCcccccccccccccccccCCCCCCChhhHHhhhcc-ceecCCCC--hhhHHHHHHHHHHHHHHHhhcCCcce-ecCHHH
Q 001788 862 SDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDS-AIVFKPVD--FGRIRRDVTNAITKKFSSIIGDALSI-EILDEA 937 (1013)
Q Consensus 862 sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~-iV~F~Pl~--~~~l~~ii~~~l~~~~~~~~~~~~~L-~id~~a 937 (1013)
..|+.||++|++. -|...||. .+||..++..+|.++.+++ +..+ .+++++
T Consensus 399 -----------------------G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~---~~~v~~ls~~a 452 (560)
T COG3829 399 -----------------------GTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRY---GRNVKGLSPDA 452 (560)
T ss_pred -----------------------CcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHc---CCCcccCCHHH
Confidence 1799999999976 34555776 5899999999998877765 3333 499999
Q ss_pred HHHHHhCCCCCh-HHHHHHHHHHHh
Q 001788 938 LEKLVGGVWLGR-TGLEDWTEKVLV 961 (1013)
Q Consensus 938 ~~~L~~~~~~ga-r~l~~~ie~~l~ 961 (1013)
+..|.++.|+|| |+|++.||+.+.
T Consensus 453 ~~~L~~y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 453 LALLLRYDWPGNVRELENVIERAVN 477 (560)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHHh
Confidence 999999999999 999999999875
No 19
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.82 E-value=1.3e-19 Score=205.59 Aligned_cols=235 Identities=18% Similarity=0.260 Sum_probs=170.6
Q ss_pred HHHHHHHhccccccHHHHHHHHHHHHHhhhh--cCC--CCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceee
Q 001788 623 KRLLKSLMEKVWWQQEAASAVATTVTQCKLG--NGK--RRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIP 698 (1013)
Q Consensus 623 ~~L~~~L~~~ViGQ~~ai~~I~~ai~~~~~g--~~~--~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~ 698 (1013)
+.+.+.|.+.|+||++|++.++.++..++.. ..+ +..+. | ..+||+||||||||++|++||+.+. .+|+.
T Consensus 4 ~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~--p-~~ILLiGppG~GKT~lAraLA~~l~---~~fi~ 77 (441)
T TIGR00390 4 REIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVT--P-KNILMIGPTGVGKTEIARRLAKLAN---APFIK 77 (441)
T ss_pred HHHHHHHhhhccCHHHHHHHHHHHHHhhhhhhccccccccccC--C-ceEEEECCCCCCHHHHHHHHHHHhC---CeEEE
Confidence 4578899999999999999999999875332 211 11111 1 2399999999999999999999986 89999
Q ss_pred eCCCCCCCCCcccccccchhh-----------------------------------------------------------
Q 001788 699 LGPRRDHEEPEVRVRGKTALD----------------------------------------------------------- 719 (1013)
Q Consensus 699 id~s~~~~~~~~g~~G~~~~~----------------------------------------------------------- 719 (1013)
+|++.|.+. ||+|.+...
T Consensus 78 vdat~~~e~---g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~ 154 (441)
T TIGR00390 78 VEATKFTEV---GYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESARE 154 (441)
T ss_pred eecceeecC---CcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHH
Confidence 998766431 122211000
Q ss_pred --------------------------------------------------------------------------------
Q 001788 720 -------------------------------------------------------------------------------- 719 (1013)
Q Consensus 720 -------------------------------------------------------------------------------- 719 (1013)
T Consensus 155 ~~~~~l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~ 234 (441)
T TIGR00390 155 AFRKKLREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDP 234 (441)
T ss_pred HHHHHHhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccCh
Confidence
Q ss_pred --hHHHHHHc-CCCEEEEEeCCCCCCH------------HHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcch
Q 001788 720 --KIGEAVKR-NPFSVILLEDIDEADM------------VVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSL 784 (1013)
Q Consensus 720 --~L~eal~~-~p~~VV~lDEIdka~~------------~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~ 784 (1013)
...+++.. ...+|||||||||... .||+.||++||...+.. +...|+..|..||++.-.
T Consensus 235 ~~v~~~a~~~~e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~-k~~~v~T~~ILFI~~GAF----- 308 (441)
T TIGR00390 235 EEIKQEAIDAVEQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNT-KYGMVKTDHILFIAAGAF----- 308 (441)
T ss_pred HHHHHHHHHHHHcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeee-cceeEECCceeEEecCCc-----
Confidence 00011122 3457999999999752 39999999997555544 335788888888876421
Q ss_pred hhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCCCc
Q 001788 785 KFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDL 864 (1013)
Q Consensus 785 ~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd~ 864 (1013)
.. .+
T Consensus 309 ~~-----------------------------------------------~k----------------------------- 312 (441)
T TIGR00390 309 QL-----------------------------------------------AK----------------------------- 312 (441)
T ss_pred CC-----------------------------------------------CC-----------------------------
Confidence 00 00
Q ss_pred ccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHH----HHHHHHHHhhcCCcceecCHHHHHH
Q 001788 865 TVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTN----AITKKFSSIIGDALSIEILDEALEK 940 (1013)
Q Consensus 865 ~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~----~l~~~~~~~~~~~~~L~id~~a~~~ 940 (1013)
| ..+.|||.+|+..+|.++||+.+++.+|+.. .+.++...+...++.|.|+++|+++
T Consensus 313 -----------------p--~DlIPEl~GR~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~ 373 (441)
T TIGR00390 313 -----------------P--SDLIPELQGRFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKR 373 (441)
T ss_pred -----------------h--hhccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHH
Confidence 0 1468899999999999999999999999963 3444444444569999999999999
Q ss_pred HHhCCC--------CChHHHHHHHHHHHhHHHHHH
Q 001788 941 LVGGVW--------LGRTGLEDWTEKVLVPSLHQL 967 (1013)
Q Consensus 941 L~~~~~--------~gar~l~~~ie~~l~~~l~~~ 967 (1013)
|+..++ .|||.|+..+|+++...+.++
T Consensus 374 IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~fe~ 408 (441)
T TIGR00390 374 IAELAYNVNEKTENIGARRLHTVLERLLEDISFEA 408 (441)
T ss_pred HHHHHHHhcccccccchhhHHHHHHHHHHHHHhcC
Confidence 999874 589999999999999888774
No 20
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.7e-18 Score=201.57 Aligned_cols=127 Identities=13% Similarity=0.116 Sum_probs=106.0
Q ss_pred CCcccccCCCcccCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-c-ccchhhhHHHHHHHHHHHHhhcCCCC
Q 001788 192 MNPRLQQAGGVCGGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-F-TCDKAGIVSKLKDLGALIETKFGNGD 267 (1013)
Q Consensus 192 ~np~l~~~~~~~vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~-~~~rge~e~r~~~l~~~~~~~~~~~~ 267 (1013)
.++++ .|.| |||.+++++|+. .+++++.++.+ + ..+-||.|..|...++++.+. ..
T Consensus 219 rg~Ll-------~gppg~Gkt~l~~aVa~e----------~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~---~~ 278 (693)
T KOG0730|consen 219 RGLLL-------YGPPGTGKTFLVRAVANE----------YGAFLFLINGPELISKFPGETESNLRKAFAEALKF---QV 278 (693)
T ss_pred CCccc-------cCCCCCChHHHHHHHHHH----------hCceeEecccHHHHHhcccchHHHHHHHHHHHhcc---CC
Confidence 36788 9999 999999999988 77999999988 4 569999999999999999984 33
Q ss_pred ceEEEecchhHHHhcccccCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEecCHHHHHHhhhcCCCCCCC
Q 001788 268 GVILDLGDLKWLVEQQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATCETYLRCQVYHPSMEND 347 (1013)
Q Consensus 268 ~~il~idel~~l~~~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~IgatT~~~Y~k~~~~~~ale~~ 347 (1013)
+.|||||||+.+++...... .....+|+++..|++.+. +++++-+|+||..-. ..||++ .
T Consensus 279 psii~IdEld~l~p~r~~~~------------~~e~Rv~sqlltL~dg~~-~~~~vivl~atnrp~-----sld~al--R 338 (693)
T KOG0730|consen 279 PSIIFIDELDALCPKREGAD------------DVESRVVSQLLTLLDGLK-PDAKVIVLAATNRPD-----SLDPAL--R 338 (693)
T ss_pred CeeEeHHhHhhhCCcccccc------------hHHHHHHHHHHHHHhhCc-CcCcEEEEEecCCcc-----ccChhh--h
Confidence 99999999999998765311 137889999999999999 799999999997644 578998 6
Q ss_pred C-CC-eeeeccCCC
Q 001788 348 W-DL-QAVPIAAKT 359 (1013)
Q Consensus 348 ~-rf-q~v~v~e~~ 359 (1013)
| || +-|.|.- |
T Consensus 339 RgRfd~ev~Igi-P 351 (693)
T KOG0730|consen 339 RGRFDREVEIGI-P 351 (693)
T ss_pred cCCCcceeeecC-C
Confidence 5 88 5666666 5
No 21
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.81 E-value=6.3e-19 Score=220.33 Aligned_cols=254 Identities=19% Similarity=0.225 Sum_probs=187.9
Q ss_pred ccccccccCCCCCCcccccccccCCCCCCHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEE
Q 001788 590 KDFLGCISSEPPQNKLHESQNDQLQKPLDPDSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLL 669 (1013)
Q Consensus 590 ~~~~s~~t~~p~~~~~~~~~~~~~~~~~d~e~l~~L~~~L~~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lL 669 (1013)
..-+..++++|..+.+. +..+++.+++.|.+.++||+++++.|...+.........+. ..++
T Consensus 290 ~~yl~~~~~ip~~~~~~-----------~~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~~~~~-------~~ll 351 (775)
T TIGR00763 290 RNYLDWLTDLPWGKYSK-----------ENLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLRGKMKG-------PILC 351 (775)
T ss_pred HHHHHHHHCCCCccccc-----------chhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCC-------ceEE
Confidence 34556778899877654 56788999999999999999999999987764432211111 1399
Q ss_pred EeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCC-----CCcccccccchhhhHHHHHHc--CCCEEEEEeCCCCCC
Q 001788 670 FMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHE-----EPEVRVRGKTALDKIGEAVKR--NPFSVILLEDIDEAD 742 (1013)
Q Consensus 670 f~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~-----~~~~g~~G~~~~~~L~eal~~--~p~~VV~lDEIdka~ 742 (1013)
|+||||||||++|++||+.+. .+|++++++.... +....|+|... +.+.+++.. ....||||||||+++
T Consensus 352 l~GppG~GKT~lAk~iA~~l~---~~~~~i~~~~~~~~~~i~g~~~~~~g~~~-g~i~~~l~~~~~~~~villDEidk~~ 427 (775)
T TIGR00763 352 LVGPPGVGKTSLGKSIAKALN---RKFVRFSLGGVRDEAEIRGHRRTYVGAMP-GRIIQGLKKAKTKNPLFLLDEIDKIG 427 (775)
T ss_pred EECCCCCCHHHHHHHHHHHhc---CCeEEEeCCCcccHHHHcCCCCceeCCCC-chHHHHHHHhCcCCCEEEEechhhcC
Confidence 999999999999999999986 6788887764321 22234555532 233344332 223499999999997
Q ss_pred HHH----HHHHHHHHHc---ceEecCC-CeEeecCceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhcc
Q 001788 743 MVV----RGNIKRAMER---GRLVDSY-GREISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRG 814 (1013)
Q Consensus 743 ~~v----q~~LL~~le~---G~l~d~~-g~~vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~ 814 (1013)
+.. .+.|+++|+. +.|.|.. +..+++++++||+|||..
T Consensus 428 ~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~---------------------------------- 473 (775)
T TIGR00763 428 SSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSI---------------------------------- 473 (775)
T ss_pred CccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCc----------------------------------
Confidence 754 4889999974 6777754 678899999999999831
Q ss_pred ccccccccchhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhh
Q 001788 815 KTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNS 894 (1013)
Q Consensus 815 ~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~R 894 (1013)
..+.++|++|
T Consensus 474 ----------------------------------------------------------------------~~i~~~L~~R 483 (775)
T TIGR00763 474 ----------------------------------------------------------------------DTIPRPLLDR 483 (775)
T ss_pred ----------------------------------------------------------------------hhCCHHHhCC
Confidence 0467799999
Q ss_pred hccceecCCCChhhHHHHHHHHHHHHHHHhhc-CCcceecCHHHHHHHHhCCC--CChHHHHHHHHHHHhHHHHHHHHc
Q 001788 895 VDSAIVFKPVDFGRIRRDVTNAITKKFSSIIG-DALSIEILDEALEKLVGGVW--LGRTGLEDWTEKVLVPSLHQLKLR 970 (1013)
Q Consensus 895 id~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~-~~~~L~id~~a~~~L~~~~~--~gar~l~~~ie~~l~~~l~~~~~~ 970 (1013)
+ .+|.|.+++.++...|+...+.....+..+ ....+.++++++++|+.... .|+|.|++.|++++.....++...
T Consensus 484 ~-~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~~~~~~~~~~~~~~ 561 (775)
T TIGR00763 484 M-EVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQIEKICRKAAVKLVEQ 561 (775)
T ss_pred e-eEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHHHHHHHHHHHHHHhc
Confidence 9 589999999999999999877543332222 12368999999999999432 689999999999998887766643
No 22
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.78 E-value=2.6e-18 Score=194.48 Aligned_cols=220 Identities=18% Similarity=0.179 Sum_probs=164.5
Q ss_pred ccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCC-ccc
Q 001788 633 VWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEP-EVR 711 (1013)
Q Consensus 633 ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~-~~g 711 (1013)
++|++.++..+...+.+..... ..+||.|++||||+.+|++|+....+...+|+.+||+...... ...
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~-----------~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~ 69 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLD-----------RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSE 69 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCC-----------CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHH
Confidence 5899999999999888765321 1299999999999999999999988778999999998653211 011
Q ss_pred ccccchhhhHHH-------HHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcch
Q 001788 712 VRGKTALDKIGE-------AVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSL 784 (1013)
Q Consensus 712 ~~G~~~~~~L~e-------al~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~ 784 (1013)
.+|+.. +.+++ .+....+++||||||+.+++.+|..|+++|++|.+...++...-..++.||++||....
T Consensus 70 lfG~~~-g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~-- 146 (329)
T TIGR02974 70 LFGHEA-GAFTGAQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLP-- 146 (329)
T ss_pred Hhcccc-ccccCcccccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHH--
Confidence 233321 11111 23344568999999999999999999999999998876665444566779999973110
Q ss_pred hhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCCCc
Q 001788 785 KFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDL 864 (1013)
Q Consensus 785 ~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd~ 864 (1013)
..+.+
T Consensus 147 --------------------------------------------------------------~~~~~------------- 151 (329)
T TIGR02974 147 --------------------------------------------------------------ALAAE------------- 151 (329)
T ss_pred --------------------------------------------------------------HHhhc-------------
Confidence 00000
Q ss_pred ccccccccccccccccCCCCCCChhhHHhhhcc-ceecCCCC--hhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHH
Q 001788 865 TVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDS-AIVFKPVD--FGRIRRDVTNAITKKFSSIIGDALSIEILDEALEKL 941 (1013)
Q Consensus 865 ~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~-iV~F~Pl~--~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L 941 (1013)
+.|+++|++|++. .|.+.||. .+||..+++.++.++..++ +..+...+++++++.|
T Consensus 152 --------------------g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~-~~~~~~~ls~~a~~~L 210 (329)
T TIGR02974 152 --------------------GRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMAREL-GLPLFPGFTPQAREQL 210 (329)
T ss_pred --------------------CchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHh-CCCCCCCcCHHHHHHH
Confidence 1799999999954 78888998 6899999999888765543 2222258999999999
Q ss_pred HhCCCCCh-HHHHHHHHHHHhH
Q 001788 942 VGGVWLGR-TGLEDWTEKVLVP 962 (1013)
Q Consensus 942 ~~~~~~ga-r~l~~~ie~~l~~ 962 (1013)
..+.|+|| |+|++.|++.+..
T Consensus 211 ~~y~WPGNvrEL~n~i~~~~~~ 232 (329)
T TIGR02974 211 LEYHWPGNVRELKNVVERSVYR 232 (329)
T ss_pred HhCCCCchHHHHHHHHHHHHHh
Confidence 99999999 8999999987753
No 23
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.78 E-value=6.9e-18 Score=209.31 Aligned_cols=236 Identities=14% Similarity=0.181 Sum_probs=180.5
Q ss_pred CHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCcee
Q 001788 618 DPDSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMI 697 (1013)
Q Consensus 618 d~e~l~~L~~~L~~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i 697 (1013)
+..++...++.|.+..+|++.+.+.|...+...... ...++ ..++|+||||+|||++++.||+.+. .+|+
T Consensus 309 ~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~-~~~~g------~~i~l~GppG~GKTtl~~~ia~~l~---~~~~ 378 (784)
T PRK10787 309 VKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRV-NKIKG------PILCLVGPPGVGKTSLGQSIAKATG---RKYV 378 (784)
T ss_pred ccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhc-ccCCC------ceEEEECCCCCCHHHHHHHHHHHhC---CCEE
Confidence 556788899999999999999999998877643321 11111 1399999999999999999999886 5688
Q ss_pred eeCCCCCCC-----CCcccccccchhhhHHHHHHcC--CCEEEEEeCCCCCCHHH----HHHHHHHHHcc---eEecCCC
Q 001788 698 PLGPRRDHE-----EPEVRVRGKTALDKIGEAVKRN--PFSVILLEDIDEADMVV----RGNIKRAMERG---RLVDSYG 763 (1013)
Q Consensus 698 ~id~s~~~~-----~~~~g~~G~~~~~~L~eal~~~--p~~VV~lDEIdka~~~v----q~~LL~~le~G---~l~d~~g 763 (1013)
+++++...+ +....|.|.. .|.+..++... ...|||||||||+++.. ++.|+++++.+ .|+|...
T Consensus 379 ~i~~~~~~d~~~i~g~~~~~~g~~-~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~ 457 (784)
T PRK10787 379 RMALGGVRDEAEIRGHRRTYIGSM-PGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYL 457 (784)
T ss_pred EEEcCCCCCHHHhccchhccCCCC-CcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccc
Confidence 887765432 1112344443 34455555542 34599999999999876 58999999865 5665443
Q ss_pred -eEeecCceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcc
Q 001788 764 -REISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLS 842 (1013)
Q Consensus 764 -~~vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ 842 (1013)
-.+|+++++||+|+|..
T Consensus 458 ~~~~dls~v~~i~TaN~~-------------------------------------------------------------- 475 (784)
T PRK10787 458 EVDYDLSDVMFVATSNSM-------------------------------------------------------------- 475 (784)
T ss_pred cccccCCceEEEEcCCCC--------------------------------------------------------------
Confidence 36889999999999730
Q ss_pred cchhhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHH-HHH
Q 001788 843 FDLNKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAIT-KKF 921 (1013)
Q Consensus 843 ldLn~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~-~~~ 921 (1013)
.++|.|++|+ .+|.|.|++.+++.+|+.++|. +..
T Consensus 476 -------------------------------------------~i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~~k~~ 511 (784)
T PRK10787 476 -------------------------------------------NIPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLLPKQI 511 (784)
T ss_pred -------------------------------------------CCCHHHhcce-eeeecCCCCHHHHHHHHHHhhhHHHH
Confidence 2467899999 7999999999999999999886 445
Q ss_pred HHhhcCCcceecCHHHHHHHHhCCC---CChHHHHHHHHHHHhHHHHHHHHcC
Q 001788 922 SSIIGDALSIEILDEALEKLVGGVW---LGRTGLEDWTEKVLVPSLHQLKLRL 971 (1013)
Q Consensus 922 ~~~~~~~~~L~id~~a~~~L~~~~~---~gar~l~~~ie~~l~~~l~~~~~~~ 971 (1013)
++....+..+.++++++++|+. +| +|+|+|++.|++.+...++++++..
T Consensus 512 ~~~~l~~~~l~i~~~ai~~ii~-~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~ 563 (784)
T PRK10787 512 ERNALKKGELTVDDSAIIGIIR-YYTREAGVRSLEREISKLCRKAVKQLLLDK 563 (784)
T ss_pred HHhCCCCCeEEECHHHHHHHHH-hCCcccCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 5543345689999999999998 55 7999999999999999999988763
No 24
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.75 E-value=1.7e-17 Score=200.25 Aligned_cols=218 Identities=17% Similarity=0.182 Sum_probs=163.2
Q ss_pred cccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCC-cc
Q 001788 632 KVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEP-EV 710 (1013)
Q Consensus 632 ~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~-~~ 710 (1013)
.++|++.++..+...+.+.... +.++||.|++||||+.+|++||....+...+|+.+||+.+.+.. ..
T Consensus 197 ~liG~s~~~~~~~~~~~~~a~~-----------~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~ 265 (534)
T TIGR01817 197 GIIGKSPAMRQVVDQARVVARS-----------NSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLES 265 (534)
T ss_pred ceEECCHHHHHHHHHHHHHhCc-----------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHH
Confidence 6899999999999988766532 11299999999999999999999988778899999998764321 01
Q ss_pred cccccchhhhHHHH-------HHcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcc
Q 001788 711 RVRGKTALDKIGEA-------VKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDS 783 (1013)
Q Consensus 711 g~~G~~~~~~L~ea-------l~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~ 783 (1013)
..+|+.. +.++++ +....+++||||||+++++.+|..|++++++|.+...+|......++.||+|||.....
T Consensus 266 ~lfg~~~-~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~ 344 (534)
T TIGR01817 266 ELFGHEK-GAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEE 344 (534)
T ss_pred HHcCCCC-CccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHH
Confidence 1233321 111111 22334679999999999999999999999999988655543333456699998742100
Q ss_pred hhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCCC
Q 001788 784 LKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSD 863 (1013)
Q Consensus 784 ~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd 863 (1013)
.+.
T Consensus 345 ----------------------------------------------------------------~~~------------- 347 (534)
T TIGR01817 345 ----------------------------------------------------------------AVA------------- 347 (534)
T ss_pred ----------------------------------------------------------------HHH-------------
Confidence 000
Q ss_pred cccccccccccccccccCCCCCCChhhHHhhhcc-ceecCCCC--hhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHH
Q 001788 864 LTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDS-AIVFKPVD--FGRIRRDVTNAITKKFSSIIGDALSIEILDEALEK 940 (1013)
Q Consensus 864 ~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~-iV~F~Pl~--~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~ 940 (1013)
.+.|+++|++|++. .|.+.||. .+||..+++.+|.++.++. +..+.+++++++.
T Consensus 348 --------------------~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~---~~~~~~s~~a~~~ 404 (534)
T TIGR01817 348 --------------------KGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNREN---GRPLTITPSAIRV 404 (534)
T ss_pred --------------------cCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHc---CCCCCCCHHHHHH
Confidence 01799999999976 56677898 6899999999998765543 3336899999999
Q ss_pred HHhCCCCCh-HHHHHHHHHHHh
Q 001788 941 LVGGVWLGR-TGLEDWTEKVLV 961 (1013)
Q Consensus 941 L~~~~~~ga-r~l~~~ie~~l~ 961 (1013)
|..+.|+|| |+|++.|++.+.
T Consensus 405 L~~~~WPGNvrEL~~v~~~a~~ 426 (534)
T TIGR01817 405 LMSCKWPGNVRELENCLERTAT 426 (534)
T ss_pred HHhCCCCChHHHHHHHHHHHHH
Confidence 999999999 899999998764
No 25
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2.3e-17 Score=178.32 Aligned_cols=89 Identities=12% Similarity=0.142 Sum_probs=70.1
Q ss_pred CChhhHHhhhccceecCCCChhhHHHHHHH----HHHHHHHHhhcCCcceecCHHHHHHHHhCCCCChHHHHHHHHHHHh
Q 001788 886 TPSQDLLNSVDSAIVFKPVDFGRIRRDVTN----AITKKFSSIIGDALSIEILDEALEKLVGGVWLGRTGLEDWTEKVLV 961 (1013)
Q Consensus 886 ~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~----~l~~~~~~~~~~~~~L~id~~a~~~L~~~~~~gar~l~~~ie~~l~ 961 (1013)
.+.|||-+|+...|.+++|+.+|+.+|+.. .+.++...+...++.|.|++++++.|+..+|.-|...+++=.+.|.
T Consensus 318 DLiPELQGRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLh 397 (444)
T COG1220 318 DLIPELQGRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLH 397 (444)
T ss_pred hcChhhcCCCceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHH
Confidence 678999999999999999999999999984 3444555555679999999999999999999655555555555666
Q ss_pred HHHHHHHHcCCCC
Q 001788 962 PSLHQLKLRLPNN 974 (1013)
Q Consensus 962 ~~l~~~~~~~~~~ 974 (1013)
+.|.+++..+.+.
T Consensus 398 TvlErlLediSFe 410 (444)
T COG1220 398 TVLERLLEDISFE 410 (444)
T ss_pred HHHHHHHHHhCcc
Confidence 6666666655555
No 26
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.73 E-value=2.6e-16 Score=196.37 Aligned_cols=123 Identities=15% Similarity=0.231 Sum_probs=94.1
Q ss_pred cCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-cc-cchhhhHHHHHHHHHHHHhhcCCCCceEEEecchhHH
Q 001788 204 GGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-FT-CDKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKWL 279 (1013)
Q Consensus 204 vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~~-~~rge~e~r~~~l~~~~~~~~~~~~~~il~idel~~l 279 (1013)
.|+| |||.+++.+|..+ +..++.++.. +. .+.|+.++++.++++.+.. ..+.|||||||+.+
T Consensus 218 ~GppGtGKT~laraia~~~----------~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~----~~p~il~iDEid~l 283 (733)
T TIGR01243 218 YGPPGTGKTLLAKAVANEA----------GAYFISINGPEIMSKYYGESEERLREIFKEAEE----NAPSIIFIDEIDAI 283 (733)
T ss_pred ECCCCCChHHHHHHHHHHh----------CCeEEEEecHHHhcccccHHHHHHHHHHHHHHh----cCCcEEEeehhhhh
Confidence 9999 9999999999763 4568888877 53 5899999999999999987 57899999999999
Q ss_pred HhcccccCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEecCHHHHHHhhhcCCCCCCCCCC-eeeeccC
Q 001788 280 VEQQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATCETYLRCQVYHPSMENDWDL-QAVPIAA 357 (1013)
Q Consensus 280 ~~~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~IgatT~~~Y~k~~~~~~ale~~~rf-q~v~v~e 357 (1013)
.+......+ +....++..+.+++.... .++.+.+||||+..+ ..||++...-|| ..+.++.
T Consensus 284 ~~~r~~~~~-----------~~~~~~~~~Ll~~ld~l~-~~~~vivI~atn~~~-----~ld~al~r~gRfd~~i~i~~ 345 (733)
T TIGR01243 284 APKREEVTG-----------EVEKRVVAQLLTLMDGLK-GRGRVIVIGATNRPD-----ALDPALRRPGRFDREIVIRV 345 (733)
T ss_pred cccccCCcc-----------hHHHHHHHHHHHHhhccc-cCCCEEEEeecCChh-----hcCHHHhCchhccEEEEeCC
Confidence 876543211 233567778888888777 689999999997654 347888333377 3456655
No 27
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.72 E-value=8.7e-17 Score=182.13 Aligned_cols=222 Identities=19% Similarity=0.192 Sum_probs=162.6
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCC-c
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEP-E 709 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~-~ 709 (1013)
+.++|++.++..+...+.+..... ..+|+.|++||||+.+|++|+........+|+.+||+.+.+.. .
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~-----------~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~ 74 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLD-----------KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLD 74 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCC-----------CCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHH
Confidence 458999999999999988765321 1299999999999999999999887677899999999764211 0
Q ss_pred ccccccchhh------hHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcc
Q 001788 710 VRVRGKTALD------KIGEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDS 783 (1013)
Q Consensus 710 ~g~~G~~~~~------~L~eal~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~ 783 (1013)
..++|+..+. .-.+.+....++++|||||+.+++.+|..|++++++|.+...++...--.++.||+||+....
T Consensus 75 ~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~- 153 (326)
T PRK11608 75 SELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLP- 153 (326)
T ss_pred HHHccccccccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHH-
Confidence 1123332110 001223344568999999999999999999999999998765553322345679999863110
Q ss_pred hhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCCC
Q 001788 784 LKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSD 863 (1013)
Q Consensus 784 ~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd 863 (1013)
..+++
T Consensus 154 ---------------------------------------------------------------~l~~~------------ 158 (326)
T PRK11608 154 ---------------------------------------------------------------AMVAE------------ 158 (326)
T ss_pred ---------------------------------------------------------------HHHHc------------
Confidence 00000
Q ss_pred cccccccccccccccccCCCCCCChhhHHhhhc-cceecCCCC--hhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHH
Q 001788 864 LTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVD-SAIVFKPVD--FGRIRRDVTNAITKKFSSIIGDALSIEILDEALEK 940 (1013)
Q Consensus 864 ~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid-~iV~F~Pl~--~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~ 940 (1013)
+.|+++|++|+. ..|...||. .+||..++..++.+...++ +..+...|++++++.
T Consensus 159 ---------------------g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~-~~~~~~~~s~~al~~ 216 (326)
T PRK11608 159 ---------------------GKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCREL-GLPLFPGFTERARET 216 (326)
T ss_pred ---------------------CCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHh-CCCCCCCCCHHHHHH
Confidence 168999999995 478888998 4899999998887765443 222235799999999
Q ss_pred HHhCCCCCh-HHHHHHHHHHHh
Q 001788 941 LVGGVWLGR-TGLEDWTEKVLV 961 (1013)
Q Consensus 941 L~~~~~~ga-r~l~~~ie~~l~ 961 (1013)
|..+.|+|| |+|++.|++.+.
T Consensus 217 L~~y~WPGNvrEL~~vl~~a~~ 238 (326)
T PRK11608 217 LLNYRWPGNIRELKNVVERSVY 238 (326)
T ss_pred HHhCCCCcHHHHHHHHHHHHHH
Confidence 999999999 899999998765
No 28
>CHL00181 cbbX CbbX; Provisional
Probab=99.72 E-value=1.3e-16 Score=177.40 Aligned_cols=225 Identities=12% Similarity=0.145 Sum_probs=156.1
Q ss_pred CCHHHHHHHHHHHhccccccHHHHHHHHHHHHH-----h--hhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHh
Q 001788 617 LDPDSFKRLLKSLMEKVWWQQEAASAVATTVTQ-----C--KLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELV 689 (1013)
Q Consensus 617 ~d~e~l~~L~~~L~~~ViGQ~~ai~~I~~ai~~-----~--~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l 689 (1013)
++...+..+.+.|.+.++|++++.+.|...+.. . ..|+.+. ++...++|+||||||||++|+++|+.+
T Consensus 9 ~~~~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~-----~~~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 9 YEKTQIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSS-----NPGLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred ccccCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCC-----CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 455667889999999999999988877655432 1 1232221 122238999999999999999999988
Q ss_pred cCC----CCceeeeCCCCCCCCCcccccccchhhhHHHHHHcCCCEEEEEeCCCCC---------CHHHHHHHHHHHHcc
Q 001788 690 SGA----SPIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKRNPFSVILLEDIDEA---------DMVVRGNIKRAMERG 756 (1013)
Q Consensus 690 ~~~----~~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~~p~~VV~lDEIdka---------~~~vq~~LL~~le~G 756 (1013)
+.. ..+++.++.++... .|+|.... ...+.+.+..++||||||++.+ ..++++.|++.|+++
T Consensus 84 ~~~g~~~~~~~~~v~~~~l~~----~~~g~~~~-~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~ 158 (287)
T CHL00181 84 YKLGYIKKGHLLTVTRDDLVG----QYIGHTAP-KTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQ 158 (287)
T ss_pred HHcCCCCCCceEEecHHHHHH----HHhccchH-HHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcC
Confidence 642 23577777553221 25554432 2345555566789999999985 568999999999864
Q ss_pred eEecCCCeEeecCceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccc
Q 001788 757 RLVDSYGREISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKE 836 (1013)
Q Consensus 757 ~l~d~~g~~vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~ 836 (1013)
. .+++||++++.. ++ ..
T Consensus 159 ~-----------~~~~vI~ag~~~----------------~~------------------------------------~~ 175 (287)
T CHL00181 159 R-----------DDLVVIFAGYKD----------------RM------------------------------------DK 175 (287)
T ss_pred C-----------CCEEEEEeCCcH----------------HH------------------------------------HH
Confidence 2 356678876420 00 00
Q ss_pred cCCCcccchhhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHH
Q 001788 837 TGSGLSFDLNKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNA 916 (1013)
Q Consensus 837 ~~~~~~ldLn~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~ 916 (1013)
.+ ...|+|.+|++.+|.|.|++.+++.+|+..+
T Consensus 176 -------------------------------------~~----------~~np~L~sR~~~~i~F~~~t~~el~~I~~~~ 208 (287)
T CHL00181 176 -------------------------------------FY----------ESNPGLSSRIANHVDFPDYTPEELLQIAKIM 208 (287)
T ss_pred -------------------------------------HH----------hcCHHHHHhCCceEEcCCcCHHHHHHHHHHH
Confidence 00 2357999999999999999999999999988
Q ss_pred HHHHHHHhhcCCcceecCHHHH----HHHHhC---CCCC-hHHHHHHHHHHHhHHHHHHHHc
Q 001788 917 ITKKFSSIIGDALSIEILDEAL----EKLVGG---VWLG-RTGLEDWTEKVLVPSLHQLKLR 970 (1013)
Q Consensus 917 l~~~~~~~~~~~~~L~id~~a~----~~L~~~---~~~g-ar~l~~~ie~~l~~~l~~~~~~ 970 (1013)
+.+.. ..+++++. +++... .|+| +|.+++++++.+...-.++...
T Consensus 209 l~~~~---------~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~~~r~~~~ 261 (287)
T CHL00181 209 LEEQQ---------YQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMRQANRIFES 261 (287)
T ss_pred HHHhc---------CCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHcC
Confidence 77532 23444444 444432 4678 5999999999999888888766
No 29
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.71 E-value=6.7e-17 Score=179.55 Aligned_cols=187 Identities=19% Similarity=0.260 Sum_probs=133.9
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcc
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEV 710 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~ 710 (1013)
++|+||++.+.. ...|.+.... ..+++ ++|+||||||||++|+.||.... ..|..++...
T Consensus 24 de~vGQ~HLlg~-~~~lrr~v~~----~~l~S-----mIl~GPPG~GKTTlA~liA~~~~---~~f~~~sAv~------- 83 (436)
T COG2256 24 DEVVGQEHLLGE-GKPLRRAVEA----GHLHS-----MILWGPPGTGKTTLARLIAGTTN---AAFEALSAVT------- 83 (436)
T ss_pred HHhcChHhhhCC-CchHHHHHhc----CCCce-----eEEECCCCCCHHHHHHHHHHhhC---CceEEecccc-------
Confidence 458999998844 2222222211 11234 99999999999999999999876 6788888762
Q ss_pred cccccchhhhHHHHHHc----CCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchhh
Q 001788 711 RVRGKTALDKIGEAVKR----NPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLKF 786 (1013)
Q Consensus 711 g~~G~~~~~~L~eal~~----~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~~ 786 (1013)
.|..+...+.+.-++ ....|+|+|||++++...|+.||..||+|.++ +|.+|+
T Consensus 84 --~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~ii-------------lIGATT-------- 140 (436)
T COG2256 84 --SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTII-------------LIGATT-------- 140 (436)
T ss_pred --ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEE-------------EEeccC--------
Confidence 344344444443322 23479999999999999999999999999986 787773
Q ss_pred cccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCCCccc
Q 001788 787 LSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDLTV 866 (1013)
Q Consensus 787 ~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd~~~ 866 (1013)
.++||.||
T Consensus 141 ----------------------------------------------------ENPsF~ln-------------------- 148 (436)
T COG2256 141 ----------------------------------------------------ENPSFELN-------------------- 148 (436)
T ss_pred ----------------------------------------------------CCCCeeec--------------------
Confidence 23444443
Q ss_pred ccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHHHhCCC
Q 001788 867 DHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLVGGVW 946 (1013)
Q Consensus 867 e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~~~~~ 946 (1013)
+.|++|. .++.|+||+.++|.+++.+.+....+.+ .+..+.++++++++|+..+-
T Consensus 149 ----------------------~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl--~~~~~~i~~~a~~~l~~~s~ 203 (436)
T COG2256 149 ----------------------PALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGL--GGQIIVLDEEALDYLVRLSN 203 (436)
T ss_pred ----------------------HHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCC--CcccccCCHHHHHHHHHhcC
Confidence 5789999 9999999999999999988544322222 13456799999999999876
Q ss_pred CChHHHHHHHH
Q 001788 947 LGRTGLEDWTE 957 (1013)
Q Consensus 947 ~gar~l~~~ie 957 (1013)
..+|..-+.+|
T Consensus 204 GD~R~aLN~LE 214 (436)
T COG2256 204 GDARRALNLLE 214 (436)
T ss_pred chHHHHHHHHH
Confidence 66675555555
No 30
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.71 E-value=1.7e-16 Score=190.09 Aligned_cols=222 Identities=14% Similarity=0.137 Sum_probs=164.5
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCC-c
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEP-E 709 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~-~ 709 (1013)
..++|++.++..+...+.+...... .+|++|++||||+.+|++|+........+|+.+||+.+.+.. .
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a~~~~-----------pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e 255 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVAASDL-----------NVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAE 255 (509)
T ss_pred CceeecCHHHHHHHHHHHHHhCCCC-----------cEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHH
Confidence 3599999999999999987543211 299999999999999999999988788899999999764321 0
Q ss_pred ccccccchhhhHH-------HHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCc
Q 001788 710 VRVRGKTALDKIG-------EAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPD 782 (1013)
Q Consensus 710 ~g~~G~~~~~~L~-------eal~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~ 782 (1013)
..++|+.. +.++ ..+....+++||||||+.+++.+|..|++++++|.+...++....-.++.||++||....
T Consensus 256 ~~lfG~~~-g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~ 334 (509)
T PRK05022 256 SELFGHVK-GAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLR 334 (509)
T ss_pred HHhcCccc-cccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHH
Confidence 11233321 1111 112334467899999999999999999999999998765554333345679999974210
Q ss_pred chhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCC
Q 001788 783 SLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSS 862 (1013)
Q Consensus 783 ~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~s 862 (1013)
. .+.+
T Consensus 335 ~----------------------------------------------------------------~~~~----------- 339 (509)
T PRK05022 335 E----------------------------------------------------------------EVRA----------- 339 (509)
T ss_pred H----------------------------------------------------------------HHHc-----------
Confidence 0 0000
Q ss_pred CcccccccccccccccccCCCCCCChhhHHhhhcc-ceecCCCC--hhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHH
Q 001788 863 DLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDS-AIVFKPVD--FGRIRRDVTNAITKKFSSIIGDALSIEILDEALE 939 (1013)
Q Consensus 863 d~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~-iV~F~Pl~--~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~ 939 (1013)
+.|+++|++|+.. .|...||. .+||..+++.++.++..++. .-.+.|++++++
T Consensus 340 ----------------------~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~--~~~~~~s~~a~~ 395 (509)
T PRK05022 340 ----------------------GRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLG--LRSLRLSPAAQA 395 (509)
T ss_pred ----------------------CCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcC--CCCCCCCHHHHH
Confidence 1799999999965 47777888 47899999988887655532 123689999999
Q ss_pred HHHhCCCCCh-HHHHHHHHHHHhHH
Q 001788 940 KLVGGVWLGR-TGLEDWTEKVLVPS 963 (1013)
Q Consensus 940 ~L~~~~~~ga-r~l~~~ie~~l~~~ 963 (1013)
.|..+.|+|| |+|++.|++.+...
T Consensus 396 ~L~~y~WPGNvrEL~~~i~ra~~~~ 420 (509)
T PRK05022 396 ALLAYDWPGNVRELEHVISRAALLA 420 (509)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhc
Confidence 9999999999 89999999876543
No 31
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.71 E-value=1.8e-16 Score=188.81 Aligned_cols=216 Identities=16% Similarity=0.198 Sum_probs=161.2
Q ss_pred cccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCC-cc
Q 001788 632 KVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEP-EV 710 (1013)
Q Consensus 632 ~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~-~~ 710 (1013)
.++|++.++..+...+.+..... ..+|+.|++||||+.+|+.|+....+...||+.+||..+.+.. ..
T Consensus 213 ~iiG~S~~m~~~~~~i~~~A~~~-----------~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lles 281 (526)
T TIGR02329 213 DLLGASAPMEQVRALVRLYARSD-----------ATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEA 281 (526)
T ss_pred heeeCCHHHHHHHHHHHHHhCCC-----------CcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHH
Confidence 48999999999998887654321 2299999999999999999999888788999999998764321 11
Q ss_pred cccccchhhhHHH--------HHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCc
Q 001788 711 RVRGKTALDKIGE--------AVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPD 782 (1013)
Q Consensus 711 g~~G~~~~~~L~e--------al~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~ 782 (1013)
..+|+.. |.+++ .+....++.||||||+.+++.+|..|+++|+++.+...++...--.++.+|++||....
T Consensus 282 eLFG~~~-gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~ 360 (526)
T TIGR02329 282 ELFGYEE-GAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALT 360 (526)
T ss_pred HhcCCcc-cccccccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHH
Confidence 2344432 22222 22233457999999999999999999999999998876554333345569999874110
Q ss_pred chhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCC
Q 001788 783 SLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSS 862 (1013)
Q Consensus 783 ~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~s 862 (1013)
..+++
T Consensus 361 ----------------------------------------------------------------~~v~~----------- 365 (526)
T TIGR02329 361 ----------------------------------------------------------------TAVQQ----------- 365 (526)
T ss_pred ----------------------------------------------------------------HHhhh-----------
Confidence 00000
Q ss_pred CcccccccccccccccccCCCCCCChhhHHhhhcc-ceecCCCC--hhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHH
Q 001788 863 DLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDS-AIVFKPVD--FGRIRRDVTNAITKKFSSIIGDALSIEILDEALE 939 (1013)
Q Consensus 863 d~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~-iV~F~Pl~--~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~ 939 (1013)
+.|+++|++|++. .|...||. .+|+..++..+|.+..... .+.+++++++
T Consensus 366 ----------------------g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~-----~~~~~~~a~~ 418 (526)
T TIGR02329 366 ----------------------GRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAAL-----RLPDSEAAAQ 418 (526)
T ss_pred ----------------------cchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHc-----CCCCCHHHHH
Confidence 1799999999964 77888888 4799999999988765442 3458899988
Q ss_pred H-------HHhCCCCCh-HHHHHHHHHHHh
Q 001788 940 K-------LVGGVWLGR-TGLEDWTEKVLV 961 (1013)
Q Consensus 940 ~-------L~~~~~~ga-r~l~~~ie~~l~ 961 (1013)
. |..+.|+|| |+|++.|++.+.
T Consensus 419 ~~~~~~~~L~~y~WPGNvrEL~nvier~~i 448 (526)
T TIGR02329 419 VLAGVADPLQRYPWPGNVRELRNLVERLAL 448 (526)
T ss_pred HhHHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 8 999999999 899999999765
No 32
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.71 E-value=2.1e-16 Score=188.05 Aligned_cols=217 Identities=14% Similarity=0.139 Sum_probs=158.0
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHH--------hcCCCCceeeeCCC
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSEL--------VSGASPIMIPLGPR 702 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~--------l~~~~~~~i~id~s 702 (1013)
+.++|++.++..+...+.+..... ..+|+.|++||||+.+|++|+.. ..+...||+.+||+
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A~s~-----------~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCa 287 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYARSS-----------AAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCG 287 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHhCCC-----------CcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecc
Confidence 348999999999999887654321 12999999999999999999998 55667899999999
Q ss_pred CCCCCC-cccccccchhhhHHH--------HHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEE
Q 001788 703 RDHEEP-EVRVRGKTALDKIGE--------AVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIF 773 (1013)
Q Consensus 703 ~~~~~~-~~g~~G~~~~~~L~e--------al~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~ii 773 (1013)
.+.+.. ....+|+..+ .+++ .+....++.||||||+.+++.+|..|+++|+++.+...+|...--.++.+
T Consensus 288 al~e~lleseLFG~~~g-aftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRi 366 (538)
T PRK15424 288 AIAESLLEAELFGYEEG-AFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRV 366 (538)
T ss_pred cCChhhHHHHhcCCccc-cccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEE
Confidence 764321 1123454322 2222 22334467999999999999999999999999999876654333345669
Q ss_pred EEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCC
Q 001788 774 ILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGD 853 (1013)
Q Consensus 774 I~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~ 853 (1013)
|++||... ...+++
T Consensus 367 Iaat~~~L----------------------------------------------------------------~~~v~~-- 380 (538)
T PRK15424 367 ISATHCDL----------------------------------------------------------------EEDVRQ-- 380 (538)
T ss_pred EEecCCCH----------------------------------------------------------------HHHHhc--
Confidence 99997311 001101
Q ss_pred CCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhcc-ceecCCCC--hhhHHHHHHHHHHHHHHHhhcCCcc
Q 001788 854 DKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDS-AIVFKPVD--FGRIRRDVTNAITKKFSSIIGDALS 930 (1013)
Q Consensus 854 ~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~-iV~F~Pl~--~~~l~~ii~~~l~~~~~~~~~~~~~ 930 (1013)
+.|+++|++|+.. .|...||. .+|+..++..+|.+...+. +
T Consensus 381 -------------------------------g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~---~-- 424 (538)
T PRK15424 381 -------------------------------GRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAAL---S-- 424 (538)
T ss_pred -------------------------------ccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHc---C--
Confidence 1699999999965 66777887 4789999999888765443 2
Q ss_pred eecCHHH-------HHHHHhCCCCCh-HHHHHHHHHHHh
Q 001788 931 IEILDEA-------LEKLVGGVWLGR-TGLEDWTEKVLV 961 (1013)
Q Consensus 931 L~id~~a-------~~~L~~~~~~ga-r~l~~~ie~~l~ 961 (1013)
..+++++ ++.|..+.|+|| |+|++.|++.+.
T Consensus 425 ~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i 463 (538)
T PRK15424 425 APFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLAL 463 (538)
T ss_pred CCCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 2255554 489999999999 999999999765
No 33
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.70 E-value=3.9e-16 Score=173.42 Aligned_cols=222 Identities=14% Similarity=0.156 Sum_probs=158.9
Q ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHh-------hhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCC
Q 001788 620 DSFKRLLKSLMEKVWWQQEAASAVATTVTQC-------KLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGA 692 (1013)
Q Consensus 620 e~l~~L~~~L~~~ViGQ~~ai~~I~~ai~~~-------~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~ 692 (1013)
..++.+.+.|...++|.+++.+.|...+... +.|+....| ..-++|+||||||||++|+++|+.++..
T Consensus 11 ~~~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~-----~~~vll~G~pGTGKT~lA~~ia~~l~~~ 85 (284)
T TIGR02880 11 SGITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLASAAP-----TLHMSFTGNPGTGKTTVALRMAQILHRL 85 (284)
T ss_pred ccHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCC-----CceEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 3567778888888999999988876654321 223322211 1129999999999999999999988642
Q ss_pred ----CCceeeeCCCCCCCCCcccccccchhhhHHHHHHcCCCEEEEEeCCCCC---------CHHHHHHHHHHHHcceEe
Q 001788 693 ----SPIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKRNPFSVILLEDIDEA---------DMVVRGNIKRAMERGRLV 759 (1013)
Q Consensus 693 ----~~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~~p~~VV~lDEIdka---------~~~vq~~LL~~le~G~l~ 759 (1013)
..+++.+++++... .|+|... ..+.+.+.+..++|||||||+.+ ..++|+.|++.|++++
T Consensus 86 g~~~~~~~v~v~~~~l~~----~~~g~~~-~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~-- 158 (284)
T TIGR02880 86 GYVRKGHLVSVTRDDLVG----QYIGHTA-PKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQR-- 158 (284)
T ss_pred CCcccceEEEecHHHHhH----hhcccch-HHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCC--
Confidence 23688888754322 3666543 23445566656689999999977 4678999999998643
Q ss_pred cCCCeEeecCceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCC
Q 001788 760 DSYGREISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGS 839 (1013)
Q Consensus 760 d~~g~~vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~ 839 (1013)
.+.++|++++.. ++
T Consensus 159 ---------~~~~vI~a~~~~----------------~~----------------------------------------- 172 (284)
T TIGR02880 159 ---------DDLVVILAGYKD----------------RM----------------------------------------- 172 (284)
T ss_pred ---------CCEEEEEeCCcH----------------HH-----------------------------------------
Confidence 356678877420 00
Q ss_pred CcccchhhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHH
Q 001788 840 GLSFDLNKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITK 919 (1013)
Q Consensus 840 ~~~ldLn~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~ 919 (1013)
|+ .. ...|+|.+|++..|.|.||+.+++..|+..++.+
T Consensus 173 ----~~----------------------------~~----------~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 173 ----DS----------------------------FF----------ESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred ----HH----------------------------HH----------hhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 00 00 2467999999999999999999999999988775
Q ss_pred HHHHhhcCCcceecCHHHHHHHHhC-------CCCCh-HHHHHHHHHHHhHHHHHHHHc
Q 001788 920 KFSSIIGDALSIEILDEALEKLVGG-------VWLGR-TGLEDWTEKVLVPSLHQLKLR 970 (1013)
Q Consensus 920 ~~~~~~~~~~~L~id~~a~~~L~~~-------~~~ga-r~l~~~ie~~l~~~l~~~~~~ 970 (1013)
. ...+++++.+.+..+ .|+|| |.+++++++.+...-.++...
T Consensus 211 ~---------~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~~~~r~~~~ 260 (284)
T TIGR02880 211 Q---------QYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLRQANRLFCD 260 (284)
T ss_pred h---------ccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHhcC
Confidence 2 135678888888776 69986 999999999988877777654
No 34
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.70 E-value=2.2e-16 Score=194.58 Aligned_cols=220 Identities=16% Similarity=0.169 Sum_probs=161.3
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCC-c
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEP-E 709 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~-~ 709 (1013)
..++|++.++..+...+.+.... +..+||.|++||||+.+|++|++...+...+|+.+||+.+.... .
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~~-----------~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~ 393 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAKS-----------SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALA 393 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhCc-----------CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHH
Confidence 45899999999888887765432 11299999999999999999999988778899999998764311 0
Q ss_pred ccccccchh---hhHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchhh
Q 001788 710 VRVRGKTAL---DKIGEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLKF 786 (1013)
Q Consensus 710 ~g~~G~~~~---~~L~eal~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~~ 786 (1013)
..++|+..+ +...+.+....+++||||||+.+++.+|..|++++++|.++..++...--.++.||+|||.... .
T Consensus 394 ~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~---~ 470 (638)
T PRK11388 394 EEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLA---M 470 (638)
T ss_pred HHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHH---H
Confidence 113333211 0011123344568999999999999999999999999999866553222234559999974210 0
Q ss_pred cccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCCCccc
Q 001788 787 LSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDLTV 866 (1013)
Q Consensus 787 ~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd~~~ 866 (1013)
.+++
T Consensus 471 -------------------------------------------------------------~~~~--------------- 474 (638)
T PRK11388 471 -------------------------------------------------------------LVEQ--------------- 474 (638)
T ss_pred -------------------------------------------------------------HHhc---------------
Confidence 0000
Q ss_pred ccccccccccccccCCCCCCChhhHHhhhcc-ceecCCCCh--hhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHHHh
Q 001788 867 DHEEEHGFTNRLLMTPSTSTPSQDLLNSVDS-AIVFKPVDF--GRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLVG 943 (1013)
Q Consensus 867 e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~-iV~F~Pl~~--~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~~ 943 (1013)
+.|+++|++|+.. .|...||.. +|+..+++.++.++..+. +..+.+++++++.|..
T Consensus 475 ------------------~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~---~~~~~~s~~a~~~L~~ 533 (638)
T PRK11388 475 ------------------NRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRF---STRLKIDDDALARLVS 533 (638)
T ss_pred ------------------CCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHh---CCCCCcCHHHHHHHHc
Confidence 1799999999965 567778884 799999999988765543 3346799999999999
Q ss_pred CCCCCh-HHHHHHHHHHHh
Q 001788 944 GVWLGR-TGLEDWTEKVLV 961 (1013)
Q Consensus 944 ~~~~ga-r~l~~~ie~~l~ 961 (1013)
+.|+|| |+|++.|++.+.
T Consensus 534 y~WPGNvreL~~~l~~~~~ 552 (638)
T PRK11388 534 YRWPGNDFELRSVIENLAL 552 (638)
T ss_pred CCCCChHHHHHHHHHHHHH
Confidence 999999 899999998664
No 35
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.67 E-value=7.3e-16 Score=184.89 Aligned_cols=220 Identities=12% Similarity=0.065 Sum_probs=160.0
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCc-
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPE- 709 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~- 709 (1013)
+.++|++.++..+...+.+..... . .++++|++||||+.+|++++....+...+|+.+||+.+.....
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~~~---~--------pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e 272 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAMLD---A--------PLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVE 272 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhCCC---C--------CEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHH
Confidence 368999999999888887654321 1 1999999999999999999999887788999999987643100
Q ss_pred ccccccchhh------hHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcc
Q 001788 710 VRVRGKTALD------KIGEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDS 783 (1013)
Q Consensus 710 ~g~~G~~~~~------~L~eal~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~ 783 (1013)
...+|+..+. .-.+.+....+++||||||+.+++.+|..|++++++|.++..++...-..++.||+||+.....
T Consensus 273 ~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~ 352 (520)
T PRK10820 273 SELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVE 352 (520)
T ss_pred HHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHH
Confidence 0122322110 0011233344588999999999999999999999999987765543334456699988631100
Q ss_pred hhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCCC
Q 001788 784 LKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSD 863 (1013)
Q Consensus 784 ~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd 863 (1013)
.+++
T Consensus 353 ----------------------------------------------------------------l~~~------------ 356 (520)
T PRK10820 353 ----------------------------------------------------------------LVQK------------ 356 (520)
T ss_pred ----------------------------------------------------------------HHHc------------
Confidence 0000
Q ss_pred cccccccccccccccccCCCCCCChhhHHhhhc-cceecCCCCh--hhHHHHHHHHHHHHHHHhhcCCc-ceecCHHHHH
Q 001788 864 LTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVD-SAIVFKPVDF--GRIRRDVTNAITKKFSSIIGDAL-SIEILDEALE 939 (1013)
Q Consensus 864 ~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid-~iV~F~Pl~~--~~l~~ii~~~l~~~~~~~~~~~~-~L~id~~a~~ 939 (1013)
+.|+++|++|+. ..|...||.. +|+..+++.++.++..+. +. ...+++++++
T Consensus 357 ---------------------g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~---g~~~~~ls~~a~~ 412 (520)
T PRK10820 357 ---------------------GEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQ---GVPRPKLAADLNT 412 (520)
T ss_pred ---------------------CCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHc---CCCCCCcCHHHHH
Confidence 168999999986 4677778884 689999988888765543 32 3579999999
Q ss_pred HHHhCCCCCh-HHHHHHHHHHHh
Q 001788 940 KLVGGVWLGR-TGLEDWTEKVLV 961 (1013)
Q Consensus 940 ~L~~~~~~ga-r~l~~~ie~~l~ 961 (1013)
+|..+.|+|| |+|++.|++.+.
T Consensus 413 ~L~~y~WPGNvreL~nvl~~a~~ 435 (520)
T PRK10820 413 VLTRYGWPGNVRQLKNAIYRALT 435 (520)
T ss_pred HHhcCCCCCHHHHHHHHHHHHHH
Confidence 9999999999 899999988775
No 36
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.67 E-value=1.8e-15 Score=158.97 Aligned_cols=193 Identities=14% Similarity=0.162 Sum_probs=119.2
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcc
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEV 710 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~ 710 (1013)
++++||++.+..+...+..++.. ..++.+ ++|+||||+|||++|+.||+.+. ..|..++...
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r---~~~l~h-----~lf~GPPG~GKTTLA~IIA~e~~---~~~~~~sg~~------- 85 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKR---GEALDH-----MLFYGPPGLGKTTLARIIANELG---VNFKITSGPA------- 85 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCT---TS---E-----EEEESSTTSSHHHHHHHHHHHCT-----EEEEECCC-------
T ss_pred HHccCcHHHHhhhHHHHHHHHhc---CCCcce-----EEEECCCccchhHHHHHHHhccC---CCeEeccchh-------
Confidence 57899999999987777655431 223334 99999999999999999999996 4555544321
Q ss_pred cccccchhhhHHHHHHc-CCCEEEEEeCCCCCCHHHHHHHHHHHHcceEec--CCC-----eEeecCceEEEEecCCCCc
Q 001788 711 RVRGKTALDKIGEAVKR-NPFSVILLEDIDEADMVVRGNIKRAMERGRLVD--SYG-----REISLGNVIFILTADWLPD 782 (1013)
Q Consensus 711 g~~G~~~~~~L~eal~~-~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d--~~g-----~~vd~~n~iiI~TSN~g~~ 782 (1013)
. +..+.+...+.. .++.|+|||||+++++.+|+.|+.+||+|.+.- +.| ..+++..-.+|.+|+..
T Consensus 86 -i---~k~~dl~~il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~-- 159 (233)
T PF05496_consen 86 -I---EKAGDLAAILTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRA-- 159 (233)
T ss_dssp ------SCHHHHHHHHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSG--
T ss_pred -h---hhHHHHHHHHHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccc--
Confidence 1 112333333332 456899999999999999999999999999752 222 13343343455555310
Q ss_pred chhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCC
Q 001788 783 SLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSS 862 (1013)
Q Consensus 783 ~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~s 862 (1013)
T Consensus 160 -------------------------------------------------------------------------------- 159 (233)
T PF05496_consen 160 -------------------------------------------------------------------------------- 159 (233)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHHH
Q 001788 863 DLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLV 942 (1013)
Q Consensus 863 d~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~ 942 (1013)
+...+.|.+|+..+..+..++.+++.+|+.+.-. -..+.+++++..+|+
T Consensus 160 ----------------------g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~---------~l~i~i~~~~~~~Ia 208 (233)
T PF05496_consen 160 ----------------------GLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSAR---------ILNIEIDEDAAEEIA 208 (233)
T ss_dssp ----------------------CCTSHCCCTTSSEEEE----THHHHHHHHHHCCH---------CTT-EE-HHHHHHHH
T ss_pred ----------------------cccchhHHhhcceecchhcCCHHHHHHHHHHHHH---------HhCCCcCHHHHHHHH
Confidence 0345578888866678999999999999865321 346889999999999
Q ss_pred hCCCCChHHHHHHHHH
Q 001788 943 GGVWLGRTGLEDWTEK 958 (1013)
Q Consensus 943 ~~~~~gar~l~~~ie~ 958 (1013)
..+-.--|--.+.+++
T Consensus 209 ~rsrGtPRiAnrll~r 224 (233)
T PF05496_consen 209 RRSRGTPRIANRLLRR 224 (233)
T ss_dssp HCTTTSHHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHH
Confidence 9886555644444444
No 37
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.66 E-value=3.4e-16 Score=177.85 Aligned_cols=218 Identities=16% Similarity=0.181 Sum_probs=161.3
Q ss_pred hccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcC-CCCceeeeCCCCCCCCC
Q 001788 630 MEKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSG-ASPIMIPLGPRRDHEEP 708 (1013)
Q Consensus 630 ~~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~-~~~~~i~id~s~~~~~~ 708 (1013)
...+||.+..+..+...+.. ..+. +. + +|+.|+|||||+.+|+.|+...-+ ...|||.|||+.|.+..
T Consensus 77 ~~~LIG~~~~~~~~~eqik~----~ap~-~~---~---vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~ 145 (403)
T COG1221 77 LDDLIGESPSLQELREQIKA----YAPS-GL---P---VLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENL 145 (403)
T ss_pred hhhhhccCHHHHHHHHHHHh----hCCC-CC---c---EEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCH
Confidence 45689999999998888876 2211 11 1 999999999999999999977666 48899999999997653
Q ss_pred cc-cccccchhhhHHHH-------HHcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCC
Q 001788 709 EV-RVRGKTALDKIGEA-------VKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWL 780 (1013)
Q Consensus 709 ~~-g~~G~~~~~~L~ea-------l~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g 780 (1013)
.. ..+||.. |.++++ +....++++|+|||..+++..|..|+++||+|.++..++...--.++.+|++||..
T Consensus 146 ~~~eLFG~~k-GaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~ 224 (403)
T COG1221 146 QEAELFGHEK-GAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTED 224 (403)
T ss_pred HHHHHhcccc-ceeecccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccC
Confidence 21 2455532 223333 33344678999999999999999999999999999877755555566699999741
Q ss_pred CcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCCCCCCCCC
Q 001788 781 PDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHN 860 (1013)
Q Consensus 781 ~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~ 860 (1013)
. .+
T Consensus 225 l---~~-------------------------------------------------------------------------- 227 (403)
T COG1221 225 L---EE-------------------------------------------------------------------------- 227 (403)
T ss_pred H---HH--------------------------------------------------------------------------
Confidence 1 00
Q ss_pred CCCcccccccccccccccccCCCCCCCh--hhHHh-hhccceecCCCCh--hhHHHHHHHHHHHHHHHhhcCCcceecC-
Q 001788 861 SSDLTVDHEEEHGFTNRLLMTPSTSTPS--QDLLN-SVDSAIVFKPVDF--GRIRRDVTNAITKKFSSIIGDALSIEIL- 934 (1013)
Q Consensus 861 ~sd~~~e~~~~~~~~~~~~~~~~~~~f~--pefl~-Rid~iV~F~Pl~~--~~l~~ii~~~l~~~~~~~~~~~~~L~id- 934 (1013)
.+. .+|+. ++..+|...||.+ +|+...++.+++....++ +..+..+
T Consensus 228 -------------------------~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l---~~~~~~~~ 279 (403)
T COG1221 228 -------------------------AVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRL---GLPLSVDS 279 (403)
T ss_pred -------------------------HHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHc---CCCCCCCC
Confidence 111 36777 5667888889884 666666777777766664 4444333
Q ss_pred HHHHHHHHhCCCCCh-HHHHHHHHHHHhHHH
Q 001788 935 DEALEKLVGGVWLGR-TGLEDWTEKVLVPSL 964 (1013)
Q Consensus 935 ~~a~~~L~~~~~~ga-r~l~~~ie~~l~~~l 964 (1013)
++++..|..+.|+|| |+|++.|++.+...-
T Consensus 280 ~~a~~~L~~y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 280 PEALRALLAYDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHHHhc
Confidence 599999999999999 999999998876653
No 38
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=2.6e-15 Score=176.58 Aligned_cols=237 Identities=19% Similarity=0.233 Sum_probs=181.8
Q ss_pred CHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCcee
Q 001788 618 DPDSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMI 697 (1013)
Q Consensus 618 d~e~l~~L~~~L~~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i 697 (1013)
+.-+++..++.|.+.-+|=+++.+.|...+.-......-..| .+||+||||||||.+++.||+.+. ..|+
T Consensus 310 ~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGp-------ILcLVGPPGVGKTSLgkSIA~al~---Rkfv 379 (782)
T COG0466 310 DKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKKLKGP-------ILCLVGPPGVGKTSLGKSIAKALG---RKFV 379 (782)
T ss_pred hhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhccCCCc-------EEEEECCCCCCchhHHHHHHHHhC---CCEE
Confidence 667889999999999999999999999988754432221122 399999999999999999999997 6899
Q ss_pred eeCCCCCCC-----CCcccccccchhhhHHHHHHcC--CCEEEEEeCCCCCCHHHH----HHHHHHHH---cceEecCC-
Q 001788 698 PLGPRRDHE-----EPEVRVRGKTALDKIGEAVKRN--PFSVILLEDIDEADMVVR----GNIKRAME---RGRLVDSY- 762 (1013)
Q Consensus 698 ~id~s~~~~-----~~~~g~~G~~~~~~L~eal~~~--p~~VV~lDEIdka~~~vq----~~LL~~le---~G~l~d~~- 762 (1013)
++......+ |+.--|+|. -.|++...+++. ...|++||||||+..+.+ .+||++|+ +..|.|..
T Consensus 380 R~sLGGvrDEAEIRGHRRTYIGa-mPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYL 458 (782)
T COG0466 380 RISLGGVRDEAEIRGHRRTYIGA-MPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYL 458 (782)
T ss_pred EEecCccccHHHhcccccccccc-CChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccc
Confidence 998764432 222236665 345666666652 234999999999976543 58899984 66777654
Q ss_pred CeEeecCceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcc
Q 001788 763 GREISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLS 842 (1013)
Q Consensus 763 g~~vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ 842 (1013)
.-..|+++++||+|+|..
T Consensus 459 ev~yDLS~VmFiaTANsl-------------------------------------------------------------- 476 (782)
T COG0466 459 EVPYDLSKVMFIATANSL-------------------------------------------------------------- 476 (782)
T ss_pred cCccchhheEEEeecCcc--------------------------------------------------------------
Confidence 347899999999999831
Q ss_pred cchhhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHH
Q 001788 843 FDLNKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFS 922 (1013)
Q Consensus 843 ldLn~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~ 922 (1013)
+..+..|++|+ ++|.+.-++.++-.+|+.++|-...-
T Consensus 477 ------------------------------------------~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~LiPk~~ 513 (782)
T COG0466 477 ------------------------------------------DTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHLIPKQL 513 (782)
T ss_pred ------------------------------------------ccCChHHhcce-eeeeecCCChHHHHHHHHHhcchHHH
Confidence 03566899999 99999999999999999987654333
Q ss_pred Hhhc-CCcceecCHHHHHHHHhCCC--CChHHHHHHHHHHHhHHHHHHHHc
Q 001788 923 SIIG-DALSIEILDEALEKLVGGVW--LGRTGLEDWTEKVLVPSLHQLKLR 970 (1013)
Q Consensus 923 ~~~~-~~~~L~id~~a~~~L~~~~~--~gar~l~~~ie~~l~~~l~~~~~~ 970 (1013)
+-.+ ..-.|.|+++|+..|..++. .|-|.|++.|.++......++..+
T Consensus 514 ~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~~~i~~~ 564 (782)
T COG0466 514 KEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKICRKAAKKILLK 564 (782)
T ss_pred HHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence 3222 34579999999999999854 588999999999888888887774
No 39
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.65 E-value=2.5e-15 Score=186.42 Aligned_cols=219 Identities=17% Similarity=0.180 Sum_probs=162.7
Q ss_pred cccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCC-cc
Q 001788 632 KVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEP-EV 710 (1013)
Q Consensus 632 ~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~-~~ 710 (1013)
.++|++.++..+...+.+...... .+|+.|++||||+.+|++|+........+|+.+||....... ..
T Consensus 377 ~liG~S~~~~~~~~~~~~~a~~~~-----------pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~ 445 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVAQSDS-----------TVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLES 445 (686)
T ss_pred ceeecCHHHHHHHHHHHHHhCCCC-----------CEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhh
Confidence 589999999999888876543211 199999999999999999999988778899999998653211 11
Q ss_pred cccccchhh------hHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcch
Q 001788 711 RVRGKTALD------KIGEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSL 784 (1013)
Q Consensus 711 g~~G~~~~~------~L~eal~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~ 784 (1013)
..+|+..+. .-.+.+....+++||||||+.+++.+|..|+++|++|.+...++...-..++.+|+||+.....
T Consensus 446 ~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~- 524 (686)
T PRK15429 446 DLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKK- 524 (686)
T ss_pred hhcCcccccccccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHH-
Confidence 123332110 1112234445689999999999999999999999999988766544444567799999742100
Q ss_pred hhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCCCc
Q 001788 785 KFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDL 864 (1013)
Q Consensus 785 ~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd~ 864 (1013)
.+.
T Consensus 525 ---------------------------------------------------------------~~~-------------- 527 (686)
T PRK15429 525 ---------------------------------------------------------------MVA-------------- 527 (686)
T ss_pred ---------------------------------------------------------------HHH--------------
Confidence 000
Q ss_pred ccccccccccccccccCCCCCCChhhHHhhhcc-ceecCCCC--hhhHHHHHHHHHHHHHHHhhcCCcce-ecCHHHHHH
Q 001788 865 TVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDS-AIVFKPVD--FGRIRRDVTNAITKKFSSIIGDALSI-EILDEALEK 940 (1013)
Q Consensus 865 ~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~-iV~F~Pl~--~~~l~~ii~~~l~~~~~~~~~~~~~L-~id~~a~~~ 940 (1013)
.+.|+++|++|+.. .|...||. .+||..+++.++.++..++ +..+ .|++++++.
T Consensus 528 -------------------~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~---~~~~~~~s~~al~~ 585 (686)
T PRK15429 528 -------------------DREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRM---GRNIDSIPAETLRT 585 (686)
T ss_pred -------------------cCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHc---CCCCCCcCHHHHHH
Confidence 01689999999965 57788888 4889999998888765543 3333 699999999
Q ss_pred HHhCCCCCh-HHHHHHHHHHHh
Q 001788 941 LVGGVWLGR-TGLEDWTEKVLV 961 (1013)
Q Consensus 941 L~~~~~~ga-r~l~~~ie~~l~ 961 (1013)
|..+.|+|| |+|++.|++.+.
T Consensus 586 L~~y~WPGNvrEL~~~i~~a~~ 607 (686)
T PRK15429 586 LSNMEWPGNVRELENVIERAVL 607 (686)
T ss_pred HHhCCCCCcHHHHHHHHHHHHH
Confidence 999999999 899999998875
No 40
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.65 E-value=3.1e-15 Score=177.91 Aligned_cols=219 Identities=16% Similarity=0.150 Sum_probs=158.5
Q ss_pred cccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCC-cc
Q 001788 632 KVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEP-EV 710 (1013)
Q Consensus 632 ~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~-~~ 710 (1013)
.++|.+.++..+...+.+.... +..+++.|++||||+.+|++|+........+|+.+||+.+.... ..
T Consensus 139 ~lig~s~~~~~l~~~~~~~~~~-----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~ 207 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLSRS-----------SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIES 207 (469)
T ss_pred cceecCHHHHHHHHHHHHHhcc-----------CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHH
Confidence 4788888888877777543321 11299999999999999999999988888999999998763211 01
Q ss_pred cccccchhhh------HHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcch
Q 001788 711 RVRGKTALDK------IGEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSL 784 (1013)
Q Consensus 711 g~~G~~~~~~------L~eal~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~ 784 (1013)
..+|+..+.. -.+.+....++.+|||||+.+++.+|..|++++++|.+...+|......++.||+||+....
T Consensus 208 ~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~-- 285 (469)
T PRK10923 208 ELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLE-- 285 (469)
T ss_pred HhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHH--
Confidence 1233321100 01112234457899999999999999999999999999876665444456779999974110
Q ss_pred hhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCCCc
Q 001788 785 KFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDL 864 (1013)
Q Consensus 785 ~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd~ 864 (1013)
. .+++
T Consensus 286 -~-------------------------------------------------------------~~~~------------- 290 (469)
T PRK10923 286 -Q-------------------------------------------------------------RVQE------------- 290 (469)
T ss_pred -H-------------------------------------------------------------HHHc-------------
Confidence 0 0000
Q ss_pred ccccccccccccccccCCCCCCChhhHHhhhc-cceecCCCC--hhhHHHHHHHHHHHHHHHhhcCCcc-eecCHHHHHH
Q 001788 865 TVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVD-SAIVFKPVD--FGRIRRDVTNAITKKFSSIIGDALS-IEILDEALEK 940 (1013)
Q Consensus 865 ~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid-~iV~F~Pl~--~~~l~~ii~~~l~~~~~~~~~~~~~-L~id~~a~~~ 940 (1013)
+.|+++|++|+. ..|...||. .+|+..++..++.++..+. +.. ..+++++++.
T Consensus 291 --------------------~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~---~~~~~~~~~~a~~~ 347 (469)
T PRK10923 291 --------------------GKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAAREL---GVEAKLLHPETEAA 347 (469)
T ss_pred --------------------CCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHc---CCCCCCcCHHHHHH
Confidence 168999999995 466667777 4899999999888765443 322 4699999999
Q ss_pred HHhCCCCCh-HHHHHHHHHHHh
Q 001788 941 LVGGVWLGR-TGLEDWTEKVLV 961 (1013)
Q Consensus 941 L~~~~~~ga-r~l~~~ie~~l~ 961 (1013)
|..+.|+|| |+|++.|++.+.
T Consensus 348 L~~~~wpgNv~eL~~~i~~~~~ 369 (469)
T PRK10923 348 LTRLAWPGNVRQLENTCRWLTV 369 (469)
T ss_pred HHhCCCCChHHHHHHHHHHHHH
Confidence 999999999 899999998775
No 41
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.61 E-value=3.2e-15 Score=153.35 Aligned_cols=136 Identities=14% Similarity=0.150 Sum_probs=97.8
Q ss_pred ccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCC-ccc
Q 001788 633 VWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEP-EVR 711 (1013)
Q Consensus 633 ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~-~~g 711 (1013)
+||.+.++..+...+.+..... .| +|++|++||||+.+|++|++...+...||+.+||+.+.... ...
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~---~p--------VlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSD---LP--------VLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTST---S---------EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCCC---CC--------EEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhh
Confidence 5899999999999887655321 11 99999999999999999999888888999999999764311 011
Q ss_pred ccccchh------hhHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCC
Q 001788 712 VRGKTAL------DKIGEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADW 779 (1013)
Q Consensus 712 ~~G~~~~------~~L~eal~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~ 779 (1013)
.+|+..+ ..-.+.+....++++|||||+.+++.+|..|+++|++|.++..++...-..++.||+|||.
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred hhccccccccccccccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 2333211 0012455566778999999999999999999999999999877665444457789999974
No 42
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.60 E-value=2.2e-14 Score=169.59 Aligned_cols=219 Identities=16% Similarity=0.200 Sum_probs=158.0
Q ss_pred cccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCC-cc
Q 001788 632 KVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEP-EV 710 (1013)
Q Consensus 632 ~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~-~~ 710 (1013)
.++|++..+..+...+.+.... +..+++.|++|+||+.+|+.++........+|+.+||+.+.... ..
T Consensus 140 ~lig~s~~~~~l~~~i~~~a~~-----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~ 208 (445)
T TIGR02915 140 GLITSSPGMQKICRTIEKIAPS-----------DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLES 208 (445)
T ss_pred ceeecCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHH
Confidence 4789998888888777643211 11289999999999999999999988778899999998753211 00
Q ss_pred cccccchhh------hHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcch
Q 001788 711 RVRGKTALD------KIGEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSL 784 (1013)
Q Consensus 711 g~~G~~~~~------~L~eal~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~ 784 (1013)
..+|+..+. ...+.+....+++||||||+.+++.+|..|++++++|.+...+|....-.++.||+||+...+
T Consensus 209 ~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~-- 286 (445)
T TIGR02915 209 ELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLK-- 286 (445)
T ss_pred HhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHH--
Confidence 122322110 011123334568999999999999999999999999998765554333346679999974210
Q ss_pred hhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCCCc
Q 001788 785 KFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDL 864 (1013)
Q Consensus 785 ~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd~ 864 (1013)
..+.+
T Consensus 287 --------------------------------------------------------------~~~~~------------- 291 (445)
T TIGR02915 287 --------------------------------------------------------------RMIAE------------- 291 (445)
T ss_pred --------------------------------------------------------------HHHHc-------------
Confidence 00000
Q ss_pred ccccccccccccccccCCCCCCChhhHHhhhcc-ceecCCCC--hhhHHHHHHHHHHHHHHHhhcCCc-ceecCHHHHHH
Q 001788 865 TVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDS-AIVFKPVD--FGRIRRDVTNAITKKFSSIIGDAL-SIEILDEALEK 940 (1013)
Q Consensus 865 ~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~-iV~F~Pl~--~~~l~~ii~~~l~~~~~~~~~~~~-~L~id~~a~~~ 940 (1013)
+.|+++|++|+.. .|...||. .+|+..+++.++.++..+. +. ...+++++++.
T Consensus 292 --------------------~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~---~~~~~~~~~~a~~~ 348 (445)
T TIGR02915 292 --------------------GTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFAREL---KRKTKGFTDDALRA 348 (445)
T ss_pred --------------------CCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHh---CCCCCCCCHHHHHH
Confidence 1689999999964 67777887 5789999998888765443 22 25799999999
Q ss_pred HHhCCCCCh-HHHHHHHHHHHh
Q 001788 941 LVGGVWLGR-TGLEDWTEKVLV 961 (1013)
Q Consensus 941 L~~~~~~ga-r~l~~~ie~~l~ 961 (1013)
|..+.|+|| |+|++.|++.+.
T Consensus 349 L~~~~wpgNvreL~~~i~~a~~ 370 (445)
T TIGR02915 349 LEAHAWPGNVRELENKVKRAVI 370 (445)
T ss_pred HHhCCCCChHHHHHHHHHHHHH
Confidence 999999999 899999998774
No 43
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.59 E-value=3.9e-14 Score=155.83 Aligned_cols=210 Identities=15% Similarity=0.152 Sum_probs=142.9
Q ss_pred cccccHHHHHHHHHHHHHh-------hhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCC----CCceeeeC
Q 001788 632 KVWWQQEAASAVATTVTQC-------KLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGA----SPIMIPLG 700 (1013)
Q Consensus 632 ~ViGQ~~ai~~I~~ai~~~-------~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~----~~~~i~id 700 (1013)
.++|++.+...|...+... ..|........+ ++|+||||||||++|+.+|+.++.. ...++.++
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~-----vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~ 81 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLH-----MIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVE 81 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcce-----EEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEec
Confidence 3789998887776544322 223332222223 9999999999999999999987532 34566777
Q ss_pred CCCCCCCCcccccccchhhhHHHHHHcCCCEEEEEeCCCCCC--------HHHHHHHHHHHHcceEecCCCeEeecCceE
Q 001788 701 PRRDHEEPEVRVRGKTALDKIGEAVKRNPFSVILLEDIDEAD--------MVVRGNIKRAMERGRLVDSYGREISLGNVI 772 (1013)
Q Consensus 701 ~s~~~~~~~~g~~G~~~~~~L~eal~~~p~~VV~lDEIdka~--------~~vq~~LL~~le~G~l~d~~g~~vd~~n~i 772 (1013)
+++... .|+|.. ...+.+.+....++|||||||+.+. .+.++.|++.|+++. .+.+
T Consensus 82 ~~~l~~----~~~g~~-~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~-----------~~~~ 145 (261)
T TIGR02881 82 RADLVG----EYIGHT-AQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNR-----------NEFV 145 (261)
T ss_pred HHHhhh----hhccch-HHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccC-----------CCEE
Confidence 665332 255543 2334455666667899999999865 467889999998642 2345
Q ss_pred EEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccC
Q 001788 773 FILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVG 852 (1013)
Q Consensus 773 iI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~ 852 (1013)
+|++++. ..+ +..
T Consensus 146 vila~~~--~~~-------------------------------------------------------------~~~---- 158 (261)
T TIGR02881 146 LILAGYS--DEM-------------------------------------------------------------DYF---- 158 (261)
T ss_pred EEecCCc--chh-------------------------------------------------------------HHH----
Confidence 6666531 000 000
Q ss_pred CCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhhcCCccee
Q 001788 853 DDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGDALSIE 932 (1013)
Q Consensus 853 ~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~ 932 (1013)
..+.|.|.+|++..|.|.+++.+++.+|+...+.. ..+.
T Consensus 159 --------------------------------~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~---------~~~~ 197 (261)
T TIGR02881 159 --------------------------------LSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE---------REYK 197 (261)
T ss_pred --------------------------------HhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH---------cCCc
Confidence 03567899999989999999999999999877643 2356
Q ss_pred cCHHHHHHHHhCC---------CCCh-HHHHHHHHHHHhHHHHHHHHc
Q 001788 933 ILDEALEKLVGGV---------WLGR-TGLEDWTEKVLVPSLHQLKLR 970 (1013)
Q Consensus 933 id~~a~~~L~~~~---------~~ga-r~l~~~ie~~l~~~l~~~~~~ 970 (1013)
++++++++|+... -+|+ |.++++++..+.....+++..
T Consensus 198 l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~~~~r~~~~ 245 (261)
T TIGR02881 198 LTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIRRQAVRLLDK 245 (261)
T ss_pred cCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 8899998885431 1444 899999999988887777655
No 44
>PRK15115 response regulator GlrR; Provisional
Probab=99.58 E-value=5.9e-14 Score=165.81 Aligned_cols=219 Identities=13% Similarity=0.111 Sum_probs=152.2
Q ss_pred cccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCc-c
Q 001788 632 KVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPE-V 710 (1013)
Q Consensus 632 ~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~-~ 710 (1013)
.++|.+..+..+...+..... .+.++++.|++|+||+.+|+.|++...+...+|+.+||..+..... .
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~-----------~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~ 203 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQ-----------SDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLES 203 (444)
T ss_pred cccccCHHHHHHHHHHHhhcc-----------CCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHH
Confidence 466777666655554433221 1223999999999999999999999887788999999986532110 0
Q ss_pred cccccchhhhHH-------HHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcc
Q 001788 711 RVRGKTALDKIG-------EAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDS 783 (1013)
Q Consensus 711 g~~G~~~~~~L~-------eal~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~ 783 (1013)
..+|+..+ .++ ..+....+++||||||+.+++.+|..|+++|++|.+...++......++.+|+||+..
T Consensus 204 ~lfg~~~~-~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--- 279 (444)
T PRK15115 204 ELFGHARG-AFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--- 279 (444)
T ss_pred HhcCCCcC-CCCCCccCCCCcEEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC---
Confidence 11222111 111 1123344579999999999999999999999999987555544334467799998731
Q ss_pred hhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCCC
Q 001788 784 LKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSD 863 (1013)
Q Consensus 784 ~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd 863 (1013)
+.. .+..
T Consensus 280 l~~-------------------------------------------------------------~~~~------------ 286 (444)
T PRK15115 280 LPK-------------------------------------------------------------AMAR------------ 286 (444)
T ss_pred HHH-------------------------------------------------------------HHHc------------
Confidence 100 0000
Q ss_pred cccccccccccccccccCCCCCCChhhHHhhhcc-ceecCCCC--hhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHH
Q 001788 864 LTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDS-AIVFKPVD--FGRIRRDVTNAITKKFSSIIGDALSIEILDEALEK 940 (1013)
Q Consensus 864 ~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~-iV~F~Pl~--~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~ 940 (1013)
+.|+++|++|++. .|...||. .+|+..++..++.++..+.. .....+++++++.
T Consensus 287 ---------------------~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~--~~~~~~~~~a~~~ 343 (444)
T PRK15115 287 ---------------------GEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHK--PFVRAFSTDAMKR 343 (444)
T ss_pred ---------------------CCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhC--CCCCCcCHHHHHH
Confidence 1689999999965 56667887 47899999988887654421 1223699999999
Q ss_pred HHhCCCCCh-HHHHHHHHHHHh
Q 001788 941 LVGGVWLGR-TGLEDWTEKVLV 961 (1013)
Q Consensus 941 L~~~~~~ga-r~l~~~ie~~l~ 961 (1013)
|..+.|+|| |+|++.|++.+.
T Consensus 344 L~~~~WpgNvreL~~~i~~~~~ 365 (444)
T PRK15115 344 LMTASWPGNVRQLVNVIEQCVA 365 (444)
T ss_pred HHhCCCCChHHHHHHHHHHHHH
Confidence 999999999 899999998664
No 45
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.58 E-value=4.9e-14 Score=153.52 Aligned_cols=220 Identities=15% Similarity=0.133 Sum_probs=159.5
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCC-c
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEP-E 709 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~-~ 709 (1013)
+.+++++..++.+...-++...-..| +|+.|.|||||..+|++-+....++..||+.+||....+.. .
T Consensus 204 ~~~v~~S~~mk~~v~qA~k~AmlDAP-----------LLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aE 272 (511)
T COG3283 204 EQIVAVSPKMKHVVEQAQKLAMLDAP-----------LLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAE 272 (511)
T ss_pred HHHhhccHHHHHHHHHHHHhhccCCC-----------eEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhH
Confidence 45789998888887766554432222 99999999999999999999999999999999998765421 1
Q ss_pred ccccccchhh-hHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchhhcc
Q 001788 710 VRVRGKTALD-KIGEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLKFLS 788 (1013)
Q Consensus 710 ~g~~G~~~~~-~L~eal~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~~~~ 788 (1013)
...+||..+. .-.+.+....++.||+|||..++|..|..||+.+.+|.|+..++.+--.-|+.+|+||..- +.
T Consensus 273 sElFG~apg~~gk~GffE~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~n---L~--- 346 (511)
T COG3283 273 SELFGHAPGDEGKKGFFEQANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVN---LV--- 346 (511)
T ss_pred HHHhcCCCCCCCccchhhhccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEeccccc---HH---
Confidence 1233333211 0011223344578999999999999999999999999999877755445567799998421 00
Q ss_pred cccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCCCccccc
Q 001788 789 QGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDLTVDH 868 (1013)
Q Consensus 789 ~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd~~~e~ 868 (1013)
.-++.
T Consensus 347 ----------------------------------------------------------~lv~~----------------- 351 (511)
T COG3283 347 ----------------------------------------------------------ELVQK----------------- 351 (511)
T ss_pred ----------------------------------------------------------HHHhc-----------------
Confidence 00100
Q ss_pred ccccccccccccCCCCCCChhhHHhhhcc-ceecCCCC--hhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHHHhCC
Q 001788 869 EEEHGFTNRLLMTPSTSTPSQDLLNSVDS-AIVFKPVD--FGRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLVGGV 945 (1013)
Q Consensus 869 ~~~~~~~~~~~~~~~~~~f~pefl~Rid~-iV~F~Pl~--~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~~~~ 945 (1013)
..|+.++++|++. ++...||. .+|+..+++.++.+..+++. --.-.++++.+.+|..+.
T Consensus 352 ----------------g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg--~p~pkl~~~~~~~L~~y~ 413 (511)
T COG3283 352 ----------------GKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELG--VPRPKLAADLLTVLTRYA 413 (511)
T ss_pred ----------------CchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhC--CCCCccCHHHHHHHHHcC
Confidence 1799999999943 44555777 47888888888887766652 124588999999999999
Q ss_pred CCCh-HHHHHHHHHHH
Q 001788 946 WLGR-TGLEDWTEKVL 960 (1013)
Q Consensus 946 ~~ga-r~l~~~ie~~l 960 (1013)
|+|| |.|++.|.+.+
T Consensus 414 WpGNVRqL~N~iyRA~ 429 (511)
T COG3283 414 WPGNVRQLKNAIYRAL 429 (511)
T ss_pred CCccHHHHHHHHHHHH
Confidence 9999 88888776653
No 46
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.58 E-value=4.6e-14 Score=167.59 Aligned_cols=218 Identities=17% Similarity=0.181 Sum_probs=160.1
Q ss_pred cccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCc-c
Q 001788 632 KVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPE-V 710 (1013)
Q Consensus 632 ~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~-~ 710 (1013)
.++|.+.++..+...+..... .+..+++.|++||||+.+|++|++...+...+|+.+||........ .
T Consensus 135 ~lig~s~~~~~v~~~i~~~a~-----------~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~ 203 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLSR-----------SDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIES 203 (463)
T ss_pred ceeecCHHHHHHHHHHHHHhC-----------cCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHH
Confidence 378888888888877765321 1123899999999999999999999887889999999986532110 1
Q ss_pred cccccchhhhHH-------HHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcc
Q 001788 711 RVRGKTALDKIG-------EAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDS 783 (1013)
Q Consensus 711 g~~G~~~~~~L~-------eal~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~ 783 (1013)
..+|+..+ .++ +.+....+++||||||+.+++.+|..|++++++|.+...+|......++.||+||+...+.
T Consensus 204 ~lfg~~~~-~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~ 282 (463)
T TIGR01818 204 ELFGHEKG-AFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEA 282 (463)
T ss_pred HhcCCCCC-CCCCcccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHH
Confidence 12333211 111 1223344678999999999999999999999999998766654444566799999742110
Q ss_pred hhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCCC
Q 001788 784 LKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSD 863 (1013)
Q Consensus 784 ~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd 863 (1013)
.+..
T Consensus 283 ----------------------------------------------------------------~~~~------------ 286 (463)
T TIGR01818 283 ----------------------------------------------------------------LVRQ------------ 286 (463)
T ss_pred ----------------------------------------------------------------HHHc------------
Confidence 0000
Q ss_pred cccccccccccccccccCCCCCCChhhHHhhhcc-ceecCCCC--hhhHHHHHHHHHHHHHHHhhcCCcc-eecCHHHHH
Q 001788 864 LTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDS-AIVFKPVD--FGRIRRDVTNAITKKFSSIIGDALS-IEILDEALE 939 (1013)
Q Consensus 864 ~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~-iV~F~Pl~--~~~l~~ii~~~l~~~~~~~~~~~~~-L~id~~a~~ 939 (1013)
+.|+++|++|+.. .|...||. .+|+..++..++.+...+. +.. ..+++++++
T Consensus 287 ---------------------~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~---~~~~~~~~~~a~~ 342 (463)
T TIGR01818 287 ---------------------GKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAAREL---DVEPKLLDPEALE 342 (463)
T ss_pred ---------------------CCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHh---CCCCCCcCHHHHH
Confidence 1689999999975 77788998 7899999999988765443 222 479999999
Q ss_pred HHHhCCCCCh-HHHHHHHHHHHh
Q 001788 940 KLVGGVWLGR-TGLEDWTEKVLV 961 (1013)
Q Consensus 940 ~L~~~~~~ga-r~l~~~ie~~l~ 961 (1013)
.|..+.|+|| |+|++.+++.+.
T Consensus 343 ~L~~~~wpgNvreL~~~~~~~~~ 365 (463)
T TIGR01818 343 RLKQLRWPGNVRQLENLCRWLTV 365 (463)
T ss_pred HHHhCCCCChHHHHHHHHHHHHH
Confidence 9999999999 899999998765
No 47
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=8e-14 Score=163.03 Aligned_cols=249 Identities=18% Similarity=0.211 Sum_probs=184.2
Q ss_pred ccCCCCCCcccccccccCCCCCCHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCC
Q 001788 596 ISSEPPQNKLHESQNDQLQKPLDPDSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDR 675 (1013)
Q Consensus 596 ~t~~p~~~~~~~~~~~~~~~~~d~e~l~~L~~~L~~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~G 675 (1013)
.|..|.++.+. +.-++...++.|.+.-+|-++..+.|...|.-++..-.-. .-.++|+||||
T Consensus 387 lt~LPWgk~S~-----------En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs~q-------GkIlCf~GPPG 448 (906)
T KOG2004|consen 387 LTSLPWGKSST-----------ENLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRGSVQ-------GKILCFVGPPG 448 (906)
T ss_pred HHhCCCCCCCh-----------hhhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhcccCC-------CcEEEEeCCCC
Confidence 36678877665 4556788899999999999999999999998766532211 12399999999
Q ss_pred CccchHHHHHHHHhcCCCCceeeeCCCCCCC-----CCcccccccchhhhHHHHHHcC--CCEEEEEeCCCCCCHHH---
Q 001788 676 VGKKKMASALSELVSGASPIMIPLGPRRDHE-----EPEVRVRGKTALDKIGEAVKRN--PFSVILLEDIDEADMVV--- 745 (1013)
Q Consensus 676 vGKT~lAr~LA~~l~~~~~~~i~id~s~~~~-----~~~~g~~G~~~~~~L~eal~~~--p~~VV~lDEIdka~~~v--- 745 (1013)
||||.+||.||+.|. ..|++|......+ |+.--|+|. ..|.+..+++.. ...+++||||||+....
T Consensus 449 VGKTSI~kSIA~ALn---RkFfRfSvGG~tDvAeIkGHRRTYVGA-MPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGD 524 (906)
T KOG2004|consen 449 VGKTSIAKSIARALN---RKFFRFSVGGMTDVAEIKGHRRTYVGA-MPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGD 524 (906)
T ss_pred CCcccHHHHHHHHhC---CceEEEeccccccHHhhcccceeeecc-CChHHHHHHHhhCCCCceEEeehhhhhCCCCCCC
Confidence 999999999999997 5678877654332 222236665 356788888763 23599999999986432
Q ss_pred -HHHHHHHHH---cceEecCC-CeEeecCceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhcccccccc
Q 001788 746 -RGNIKRAME---RGRLVDSY-GREISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRR 820 (1013)
Q Consensus 746 -q~~LL~~le---~G~l~d~~-g~~vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk 820 (1013)
-.+||++|+ +..|.|.. .-.+|++.++||+|.|.-
T Consensus 525 PasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~i---------------------------------------- 564 (906)
T KOG2004|consen 525 PASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVI---------------------------------------- 564 (906)
T ss_pred hHHHHHHhcChhhccchhhhccccccchhheEEEEecccc----------------------------------------
Confidence 357888885 44555433 358999999999999841
Q ss_pred ccchhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhcccee
Q 001788 821 ASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIV 900 (1013)
Q Consensus 821 ~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~ 900 (1013)
...++.|++|+ ++|.
T Consensus 565 ----------------------------------------------------------------dtIP~pLlDRM-EvIe 579 (906)
T KOG2004|consen 565 ----------------------------------------------------------------DTIPPPLLDRM-EVIE 579 (906)
T ss_pred ----------------------------------------------------------------ccCChhhhhhh-heee
Confidence 04678999999 9999
Q ss_pred cCCCChhhHHHHHHHHHHHHHHHhhc-CCcceecCHHHHHHHHhCCC--CChHHHHHHHHHHHhHHHHHHHHcC
Q 001788 901 FKPVDFGRIRRDVTNAITKKFSSIIG-DALSIEILDEALEKLVGGVW--LGRTGLEDWTEKVLVPSLHQLKLRL 971 (1013)
Q Consensus 901 F~Pl~~~~l~~ii~~~l~~~~~~~~~-~~~~L~id~~a~~~L~~~~~--~gar~l~~~ie~~l~~~l~~~~~~~ 971 (1013)
..-+..++-.+|++..|-....+--+ ..-.+.++++++..|..++. .|-|.|++-|++++...-.++-...
T Consensus 580 lsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~iekI~Rk~Al~vv~~~ 653 (906)
T KOG2004|consen 580 LSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQIEKICRKVALKVVEGE 653 (906)
T ss_pred ccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999887654433222 23357899999998888654 6889999999988876665555443
No 48
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=99.56 E-value=2.6e-14 Score=153.50 Aligned_cols=156 Identities=15% Similarity=0.137 Sum_probs=116.9
Q ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCC--CCceee
Q 001788 621 SFKRLLKSLMEKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGA--SPIMIP 698 (1013)
Q Consensus 621 ~l~~L~~~L~~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~--~~~~i~ 698 (1013)
++..|++.|...++||.-+++.|..++.-......+++|+ ++-|.|+|||||..+++.||+.++.. ..++|+
T Consensus 72 ~~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n~~p~KPL------vLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~ 145 (344)
T KOG2170|consen 72 DLDGLEKDLARALFGQHLAKQLVVNALKSHWANPNPRKPL------VLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVH 145 (344)
T ss_pred cchHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCCCCCCe------EEEecCCCCCchhHHHHHHHHHHHhccccchhHH
Confidence 4677899999999999999999999999887766676665 48999999999999999999999865 333332
Q ss_pred eCCCCCCCCCcccccc---cchhhhHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEE
Q 001788 699 LGPRRDHEEPEVRVRG---KTALDKIGEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFIL 775 (1013)
Q Consensus 699 id~s~~~~~~~~g~~G---~~~~~~L~eal~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~ 775 (1013)
.=.+... -+.+.++. .+-..++.+-+...+.++++|||+||||+.+.+.|-..++.-- ....++++++||||
T Consensus 146 ~fvat~h-FP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdyyp----~v~gv~frkaIFIf 220 (344)
T KOG2170|consen 146 HFVATLH-FPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDYYP----QVSGVDFRKAIFIF 220 (344)
T ss_pred Hhhhhcc-CCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhcccc----ccccccccceEEEE
Confidence 1111100 01111211 1123456666677888999999999999999999999997422 22348999999999
Q ss_pred ecCCCCcchhhc
Q 001788 776 TADWLPDSLKFL 787 (1013)
Q Consensus 776 TSN~g~~~~~~~ 787 (1013)
-||.|.+.+.+.
T Consensus 221 LSN~gg~eI~~~ 232 (344)
T KOG2170|consen 221 LSNAGGSEIARI 232 (344)
T ss_pred EcCCcchHHHHH
Confidence 999998877754
No 49
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.55 E-value=1.1e-13 Score=163.93 Aligned_cols=219 Identities=17% Similarity=0.182 Sum_probs=156.9
Q ss_pred cccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCC-cc
Q 001788 632 KVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEP-EV 710 (1013)
Q Consensus 632 ~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~-~~ 710 (1013)
.++|++.++..+...+...... +..+++.|++|+||+.+|++++....+...+|+.+||..+.... ..
T Consensus 144 ~ii~~S~~~~~~~~~~~~~a~~-----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~ 212 (457)
T PRK11361 144 HILTNSPAMMDICKDTAKIALS-----------QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLES 212 (457)
T ss_pred ceecccHHHhHHHHHHHHHcCC-----------CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHH
Confidence 4889998888887776554432 12299999999999999999999887778899999998753211 01
Q ss_pred cccccchhh------hHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcch
Q 001788 711 RVRGKTALD------KIGEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSL 784 (1013)
Q Consensus 711 g~~G~~~~~------~L~eal~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~ 784 (1013)
..+|+..+. .-.+.+....+++||||||+++++.+|..|+++++++.+...++...-..++.||+|||....
T Consensus 213 ~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~-- 290 (457)
T PRK11361 213 ELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQ-- 290 (457)
T ss_pred HhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHH--
Confidence 122322110 001122334467999999999999999999999999988765554333446679999974210
Q ss_pred hhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCCCc
Q 001788 785 KFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDL 864 (1013)
Q Consensus 785 ~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd~ 864 (1013)
..+.+
T Consensus 291 --------------------------------------------------------------~~~~~------------- 295 (457)
T PRK11361 291 --------------------------------------------------------------AMVKE------------- 295 (457)
T ss_pred --------------------------------------------------------------HHHHc-------------
Confidence 00000
Q ss_pred ccccccccccccccccCCCCCCChhhHHhhhcc-ceecCCCC--hhhHHHHHHHHHHHHHHHhhcCCcc-eecCHHHHHH
Q 001788 865 TVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDS-AIVFKPVD--FGRIRRDVTNAITKKFSSIIGDALS-IEILDEALEK 940 (1013)
Q Consensus 865 ~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~-iV~F~Pl~--~~~l~~ii~~~l~~~~~~~~~~~~~-L~id~~a~~~ 940 (1013)
+.|+++|++|+.. .|...||. .+|+..++..++.++..+. +.. +.+++++++.
T Consensus 296 --------------------g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~---~~~~~~~~~~a~~~ 352 (457)
T PRK11361 296 --------------------GTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSEN---QRDIIDIDPMAMSL 352 (457)
T ss_pred --------------------CCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHc---CCCCCCcCHHHHHH
Confidence 1688899999954 55666777 5889888888888765442 223 5799999999
Q ss_pred HHhCCCCCh-HHHHHHHHHHHh
Q 001788 941 LVGGVWLGR-TGLEDWTEKVLV 961 (1013)
Q Consensus 941 L~~~~~~ga-r~l~~~ie~~l~ 961 (1013)
|..+.|+|| |+|++.|++.+.
T Consensus 353 L~~~~wpgNv~eL~~~~~~~~~ 374 (457)
T PRK11361 353 LTAWSWPGNIRELSNVIERAVV 374 (457)
T ss_pred HHcCCCCCcHHHHHHHHHHHHH
Confidence 999999999 899999998764
No 50
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.53 E-value=1.3e-13 Score=165.48 Aligned_cols=199 Identities=19% Similarity=0.236 Sum_probs=134.8
Q ss_pred cccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhc-------CCCCceeeeCCCCC
Q 001788 632 KVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVS-------GASPIMIPLGPRRD 704 (1013)
Q Consensus 632 ~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~-------~~~~~~i~id~s~~ 704 (1013)
.++||++++..+..++. +.. .. + ++|+||+|||||++|+++++... ....+|+.+||+..
T Consensus 66 ~iiGqs~~i~~l~~al~----~~~-~~---~-----vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~ 132 (531)
T TIGR02902 66 EIIGQEEGIKALKAALC----GPN-PQ---H-----VIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTA 132 (531)
T ss_pred HeeCcHHHHHHHHHHHh----CCC-Cc---e-----EEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccc
Confidence 48999999988876542 111 11 1 89999999999999999998642 12468999998631
Q ss_pred --CC--------C--Ccccccccchh------hhHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCC----
Q 001788 705 --HE--------E--PEVRVRGKTAL------DKIGEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSY---- 762 (1013)
Q Consensus 705 --~~--------~--~~~g~~G~~~~------~~L~eal~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~---- 762 (1013)
.+ + ..+.|.|.... ....+.+.+..+++||||||+++++..|+.|+++|+++++.-..
T Consensus 133 ~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~ 212 (531)
T TIGR02902 133 RFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYN 212 (531)
T ss_pred cCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeecccccc
Confidence 11 0 01112221100 01122444556789999999999999999999999998764211
Q ss_pred ----------------CeEeecCceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhh
Q 001788 763 ----------------GREISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDE 826 (1013)
Q Consensus 763 ----------------g~~vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~ 826 (1013)
|... +.++|++|+...
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~---d~rlI~ATt~~p--------------------------------------------- 244 (531)
T TIGR02902 213 SENPNIPSHIHDIFQNGLPA---DFRLIGATTRNP--------------------------------------------- 244 (531)
T ss_pred ccCcccccchhhhcccCccc---ceEEEEEecCCc---------------------------------------------
Confidence 1112 223455443100
Q ss_pred hhhccccccccCCCcccchhhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCCh
Q 001788 827 EERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDF 906 (1013)
Q Consensus 827 ~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~ 906 (1013)
....|++..|+ ..+.|.|++.
T Consensus 245 ----------------------------------------------------------~~L~paLrsR~-~~I~f~pL~~ 265 (531)
T TIGR02902 245 ----------------------------------------------------------EEIPPALRSRC-VEIFFRPLLD 265 (531)
T ss_pred ----------------------------------------------------------ccCChHHhhhh-heeeCCCCCH
Confidence 03457888998 6788999999
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHHHhCCCCChHHHHHHHHHHH
Q 001788 907 GRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLVGGVWLGRTGLEDWTEKVL 960 (1013)
Q Consensus 907 ~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~~~~~~gar~l~~~ie~~l 960 (1013)
+++.+|++..+.+ ..+.+++++++.|..++| ..|.+.+.++...
T Consensus 266 eei~~Il~~~a~k---------~~i~is~~al~~I~~y~~-n~Rel~nll~~Aa 309 (531)
T TIGR02902 266 EEIKEIAKNAAEK---------IGINLEKHALELIVKYAS-NGREAVNIVQLAA 309 (531)
T ss_pred HHHHHHHHHHHHH---------cCCCcCHHHHHHHHHhhh-hHHHHHHHHHHHH
Confidence 9999999876643 236799999999999988 4588888887654
No 51
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=1.5e-13 Score=160.07 Aligned_cols=185 Identities=17% Similarity=0.296 Sum_probs=132.6
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCc---------------
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPI--------------- 695 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~--------------- 695 (1013)
+.|+||++++..+..++...+.+ .+ +||+||+|||||++|+.+|+.+......
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~-------ha-----~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~ 85 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIG-------HA-----YIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEIT 85 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCC-------eE-----EEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHH
Confidence 45899999999988888643321 12 8999999999999999999999754211
Q ss_pred ------eeeeCCCCCCCCCcccccccchhhhHHHHHHc----CCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeE
Q 001788 696 ------MIPLGPRRDHEEPEVRVRGKTALDKIGEAVKR----NPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGRE 765 (1013)
Q Consensus 696 ------~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~----~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~ 765 (1013)
++.+|.+ ...|.+....+.+.+.. ..+.|+||||+|+++...++.||+.||+-.
T Consensus 86 ~g~~~dviEIdaa--------s~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp-------- 149 (484)
T PRK14956 86 KGISSDVLEIDAA--------SNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPP-------- 149 (484)
T ss_pred ccCCccceeechh--------hcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCC--------
Confidence 1111111 12233333344444432 346799999999999999999999998621
Q ss_pred eecCceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccch
Q 001788 766 ISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDL 845 (1013)
Q Consensus 766 vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldL 845 (1013)
.+++||++||-.
T Consensus 150 ---~~viFILaTte~----------------------------------------------------------------- 161 (484)
T PRK14956 150 ---AHIVFILATTEF----------------------------------------------------------------- 161 (484)
T ss_pred ---CceEEEeecCCh-----------------------------------------------------------------
Confidence 356789888620
Q ss_pred hhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhh
Q 001788 846 NKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSII 925 (1013)
Q Consensus 846 n~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~ 925 (1013)
..+.+.+++|+ ..+.|+|++.+++.+.+...+..
T Consensus 162 ---------------------------------------~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~------ 195 (484)
T PRK14956 162 ---------------------------------------HKIPETILSRC-QDFIFKKVPLSVLQDYSEKLCKI------ 195 (484)
T ss_pred ---------------------------------------hhccHHHHhhh-heeeecCCCHHHHHHHHHHHHHH------
Confidence 03456799999 78999999999988777654432
Q ss_pred cCCcceecCHHHHHHHHhCCCCChHHHHHHHHHHH
Q 001788 926 GDALSIEILDEALEKLVGGVWLGRTGLEDWTEKVL 960 (1013)
Q Consensus 926 ~~~~~L~id~~a~~~L~~~~~~gar~l~~~ie~~l 960 (1013)
-.+.++++++.+|+..+-.+.|..-+++++.+
T Consensus 196 ---Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i 227 (484)
T PRK14956 196 ---ENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAI 227 (484)
T ss_pred ---cCCCCCHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 13678999999999988766687777777654
No 52
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=3.1e-13 Score=162.46 Aligned_cols=191 Identities=16% Similarity=0.158 Sum_probs=128.4
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCC------CC
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPR------RD 704 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s------~~ 704 (1013)
++|+||+++++.|.+++...+.. . .+||+||+|||||++|+.|++.++.... .-...|. .+
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~-------H-----AyLFtGPpGvGKTTlAriLAKaLnCe~~-~~~~PCG~C~sCr~I 82 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLH-------H-----AYLFTGTRGVGKTTLSRIFAKALNCETG-VTSQPCGVCRACREI 82 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCC-------e-----EEEEECCCCCCHHHHHHHHHHHhcCccC-CCCCCCcccHHHHHH
Confidence 56899999999998887532211 1 1899999999999999999999975311 0000110 00
Q ss_pred CCCCccc--------ccccchhhhHHHHHHc----CCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceE
Q 001788 705 HEEPEVR--------VRGKTALDKIGEAVKR----NPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVI 772 (1013)
Q Consensus 705 ~~~~~~g--------~~G~~~~~~L~eal~~----~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~i 772 (1013)
..+..+. ..|.+....+.+.+.. ..+.|+||||+|+++...+|.||+.||+-. .+++
T Consensus 83 ~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP-----------~~v~ 151 (830)
T PRK07003 83 DEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPP-----------PHVK 151 (830)
T ss_pred hcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcC-----------CCeE
Confidence 1111111 1233333344444433 346899999999999999999999998621 3567
Q ss_pred EEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccC
Q 001788 773 FILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVG 852 (1013)
Q Consensus 773 iI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~ 852 (1013)
||++||-.
T Consensus 152 FILaTtd~------------------------------------------------------------------------ 159 (830)
T PRK07003 152 FILATTDP------------------------------------------------------------------------ 159 (830)
T ss_pred EEEEECCh------------------------------------------------------------------------
Confidence 99998620
Q ss_pred CCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhhcCCccee
Q 001788 853 DDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGDALSIE 932 (1013)
Q Consensus 853 ~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~ 932 (1013)
..+.+.+++|+ ..|.|++++.+++.+.+...+.. -.+.
T Consensus 160 --------------------------------~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~---------EgI~ 197 (830)
T PRK07003 160 --------------------------------QKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGE---------ERIA 197 (830)
T ss_pred --------------------------------hhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHH---------cCCC
Confidence 03455788999 89999999999998887665442 1357
Q ss_pred cCHHHHHHHHhCCCCChHHHHHHHHHH
Q 001788 933 ILDEALEKLVGGVWLGRTGLEDWTEKV 959 (1013)
Q Consensus 933 id~~a~~~L~~~~~~gar~l~~~ie~~ 959 (1013)
+++++++.|+..+-.+-|...+++++.
T Consensus 198 id~eAL~lIA~~A~GsmRdALsLLdQA 224 (830)
T PRK07003 198 FEPQALRLLARAAQGSMRDALSLTDQA 224 (830)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 889999999887655556555555443
No 53
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=3.4e-13 Score=160.38 Aligned_cols=191 Identities=16% Similarity=0.160 Sum_probs=129.7
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCC---ceeee-CCCCC--
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASP---IMIPL-GPRRD-- 704 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~---~~i~i-d~s~~-- 704 (1013)
++||||+++++.|.+++...+..+ . +||+||+|+|||++|+.||+.++.... .-+.. .|..+
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpH-------A-----~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~s 83 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHH-------A-----YLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRA 83 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCce-------E-----EEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHH
Confidence 568999999999999887544321 1 899999999999999999999985310 00000 01000
Q ss_pred ----CCCCcc--------cccccchhhhHHHHHHc----CCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeec
Q 001788 705 ----HEEPEV--------RVRGKTALDKIGEAVKR----NPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISL 768 (1013)
Q Consensus 705 ----~~~~~~--------g~~G~~~~~~L~eal~~----~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~ 768 (1013)
..+..+ ...|.+....+.+.+.. ..+.|+||||+|+++...+|.||+.||+-.
T Consensus 84 C~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP----------- 152 (700)
T PRK12323 84 CTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPP----------- 152 (700)
T ss_pred HHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCC-----------
Confidence 001001 12333344445555443 346899999999999999999999998621
Q ss_pred CceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhh
Q 001788 769 GNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKA 848 (1013)
Q Consensus 769 ~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~ 848 (1013)
.+++||++||--
T Consensus 153 ~~v~FILaTtep-------------------------------------------------------------------- 164 (700)
T PRK12323 153 EHVKFILATTDP-------------------------------------------------------------------- 164 (700)
T ss_pred CCceEEEEeCCh--------------------------------------------------------------------
Confidence 356688888620
Q ss_pred hccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhhcCC
Q 001788 849 ADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGDA 928 (1013)
Q Consensus 849 ~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~ 928 (1013)
..+.+-+++|+ ..+.|++++.+++.+.+.+.+.+
T Consensus 165 ------------------------------------~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~--------- 198 (700)
T PRK12323 165 ------------------------------------QKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGE--------- 198 (700)
T ss_pred ------------------------------------HhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHH---------
Confidence 03456789999 99999999999998887765542
Q ss_pred cceecCHHHHHHHHhCCCCChHHHHHHHHH
Q 001788 929 LSIEILDEALEKLVGGVWLGRTGLEDWTEK 958 (1013)
Q Consensus 929 ~~L~id~~a~~~L~~~~~~gar~l~~~ie~ 958 (1013)
-.+.+++++++.|+..+-.+-|...+++++
T Consensus 199 Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQ 228 (700)
T PRK12323 199 EGIAHEVNALRLLAQAAQGSMRDALSLTDQ 228 (700)
T ss_pred cCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 135678899998888765555655555543
No 54
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.48 E-value=2.1e-13 Score=148.83 Aligned_cols=191 Identities=15% Similarity=0.151 Sum_probs=130.4
Q ss_pred cccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCccc
Q 001788 632 KVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVR 711 (1013)
Q Consensus 632 ~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g 711 (1013)
.++||++++.. ..+.+.... ...+++ ++|+||||||||++|+.|+...-.....||.+....-
T Consensus 139 dyvGQ~hlv~q--~gllrs~ie---q~~ipS-----mIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a------- 201 (554)
T KOG2028|consen 139 DYVGQSHLVGQ--DGLLRSLIE---QNRIPS-----MILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNA------- 201 (554)
T ss_pred HhcchhhhcCc--chHHHHHHH---cCCCCc-----eEEecCCCCchHHHHHHHHhhcCCCceEEEEEecccc-------
Confidence 46888888755 222222211 112345 9999999999999999999987655556777665521
Q ss_pred ccccchhhhHHHHHH-----cCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchhh
Q 001788 712 VRGKTALDKIGEAVK-----RNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLKF 786 (1013)
Q Consensus 712 ~~G~~~~~~L~eal~-----~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~~ 786 (1013)
+......+++.-+ -+...|+|||||++.+...|+.||..+|+|.++ +|-+|+
T Consensus 202 --~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~-------------lIGATT-------- 258 (554)
T KOG2028|consen 202 --KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDIT-------------LIGATT-------- 258 (554)
T ss_pred --chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcccceeccCceE-------------EEeccc--------
Confidence 1111122222211 134589999999999999999999999999887 677663
Q ss_pred cccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCCCccc
Q 001788 787 LSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDLTV 866 (1013)
Q Consensus 787 ~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd~~~ 866 (1013)
.+++|.||
T Consensus 259 ----------------------------------------------------ENPSFqln-------------------- 266 (554)
T KOG2028|consen 259 ----------------------------------------------------ENPSFQLN-------------------- 266 (554)
T ss_pred ----------------------------------------------------CCCccchh--------------------
Confidence 12344444
Q ss_pred ccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhh---c-CCcceecCHHHHHHHH
Q 001788 867 DHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSII---G-DALSIEILDEALEKLV 942 (1013)
Q Consensus 867 e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~---~-~~~~L~id~~a~~~L~ 942 (1013)
..|++|+ .++++++|..+.+..|+.+.+.-+.+.-. + .+-...+++.+++||+
T Consensus 267 ----------------------~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla 323 (554)
T KOG2028|consen 267 ----------------------AALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLA 323 (554)
T ss_pred ----------------------HHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHH
Confidence 3689999 99999999999999999987764433222 1 1234579999999999
Q ss_pred hCCCCChHHHHHHHH
Q 001788 943 GGVWLGRTGLEDWTE 957 (1013)
Q Consensus 943 ~~~~~gar~l~~~ie 957 (1013)
..+-..+|.--+.+|
T Consensus 324 ~lsdGDaR~aLN~Le 338 (554)
T KOG2028|consen 324 YLSDGDARAALNALE 338 (554)
T ss_pred HhcCchHHHHHHHHH
Confidence 887666663333443
No 55
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=6e-13 Score=162.85 Aligned_cols=193 Identities=16% Similarity=0.138 Sum_probs=130.4
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCC----ceeee-CCCCCC
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASP----IMIPL-GPRRDH 705 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~----~~i~i-d~s~~~ 705 (1013)
+.|+||++++..+.+++...+.. . .+||+||+|||||++||.||+.+++... ++-.. .|-...
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~-------H-----AyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~ 83 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLH-------H-----AYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIA 83 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCC-------e-----EEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHh
Confidence 46899999999988888644321 1 1799999999999999999999985421 10000 000000
Q ss_pred CCCcc--------cccccchhhhHHHHHHc----CCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEE
Q 001788 706 EEPEV--------RVRGKTALDKIGEAVKR----NPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIF 773 (1013)
Q Consensus 706 ~~~~~--------g~~G~~~~~~L~eal~~----~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~ii 773 (1013)
.+..+ ...|.+....+.+.+.. .++.|+||||+|+++...++.||+.||+-. .+++|
T Consensus 84 ~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP-----------~~vrF 152 (944)
T PRK14949 84 QGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPP-----------EHVKF 152 (944)
T ss_pred cCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccC-----------CCeEE
Confidence 00000 01233333444444443 346899999999999999999999999621 24557
Q ss_pred EEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCC
Q 001788 774 ILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGD 853 (1013)
Q Consensus 774 I~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~ 853 (1013)
|++|+-.
T Consensus 153 ILaTTe~------------------------------------------------------------------------- 159 (944)
T PRK14949 153 LLATTDP------------------------------------------------------------------------- 159 (944)
T ss_pred EEECCCc-------------------------------------------------------------------------
Confidence 8877510
Q ss_pred CCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhhcCCcceec
Q 001788 854 DKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGDALSIEI 933 (1013)
Q Consensus 854 ~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~i 933 (1013)
..+.+-++.|+ .++.|+|++.+++.+.+...+.. -.+.+
T Consensus 160 -------------------------------~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~---------EgI~~ 198 (944)
T PRK14949 160 -------------------------------QKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQ---------EQLPF 198 (944)
T ss_pred -------------------------------hhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHH---------cCCCC
Confidence 03455788898 89999999999999888765543 13678
Q ss_pred CHHHHHHHHhCCCCChHHHHHHHHHHH
Q 001788 934 LDEALEKLVGGVWLGRTGLEDWTEKVL 960 (1013)
Q Consensus 934 d~~a~~~L~~~~~~gar~l~~~ie~~l 960 (1013)
++++++.|+..+-...|...+++++.+
T Consensus 199 edeAL~lIA~~S~Gd~R~ALnLLdQal 225 (944)
T PRK14949 199 EAEALTLLAKAANGSMRDALSLTDQAI 225 (944)
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999886555676666665433
No 56
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.46 E-value=1.2e-12 Score=154.60 Aligned_cols=195 Identities=15% Similarity=0.132 Sum_probs=139.7
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCc-ccccccchhh------hHHHHHHcCCCEEEEEeCCCC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPE-VRVRGKTALD------KIGEAVKRNPFSVILLEDIDE 740 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~-~g~~G~~~~~------~L~eal~~~p~~VV~lDEIdk 740 (1013)
+++.|.+|+||+.+|++|+....+...+|+.+||+....... ...+|+..+. .-.+.+....+++||||||+.
T Consensus 165 vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~ 244 (441)
T PRK10365 165 VLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGD 244 (441)
T ss_pred EEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEecccc
Confidence 899999999999999999999887889999999986532100 0112222111 001122334468999999999
Q ss_pred CCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhcccccccc
Q 001788 741 ADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRR 820 (1013)
Q Consensus 741 a~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk 820 (1013)
+++.+|..|++++++|.+...++...-..++.+|+||+.... .
T Consensus 245 l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~---~---------------------------------- 287 (441)
T PRK10365 245 ISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLA---A---------------------------------- 287 (441)
T ss_pred CCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHH---H----------------------------------
Confidence 999999999999999998765544333345668888863110 0
Q ss_pred ccchhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhcc-ce
Q 001788 821 ASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDS-AI 899 (1013)
Q Consensus 821 ~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~-iV 899 (1013)
.+. ...|+++|++|+.. .|
T Consensus 288 ---------------------------~~~---------------------------------~~~~~~~l~~~l~~~~i 307 (441)
T PRK10365 288 ---------------------------EVN---------------------------------AGRFRQDLYYRLNVVAI 307 (441)
T ss_pred ---------------------------HHH---------------------------------cCCchHHHHHHhcccee
Confidence 000 01689999999964 55
Q ss_pred ecCCCC--hhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHHHhCCCCCh-HHHHHHHHHHHh
Q 001788 900 VFKPVD--FGRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLVGGVWLGR-TGLEDWTEKVLV 961 (1013)
Q Consensus 900 ~F~Pl~--~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~~~~~~ga-r~l~~~ie~~l~ 961 (1013)
...||. .+|+..+++.++.++..+.. .-...+++++++.|..+.|+|| |+|++.|++.+.
T Consensus 308 ~~ppLreR~~Di~~l~~~~l~~~~~~~~--~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~ 370 (441)
T PRK10365 308 EVPSLRQRREDIPLLAGHFLQRFAERNR--KAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVV 370 (441)
T ss_pred cCCChhhcchhHHHHHHHHHHHHHHHhC--CCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 667777 46899999988887655432 1234699999999999999999 899999998664
No 57
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.46 E-value=2.7e-13 Score=159.09 Aligned_cols=185 Identities=17% Similarity=0.293 Sum_probs=136.6
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCc-ccccccchhhhHHHHH--------HcCCCEEEEEeCC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPE-VRVRGKTALDKIGEAV--------KRNPFSVILLEDI 738 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~-~g~~G~~~~~~L~eal--------~~~p~~VV~lDEI 738 (1013)
+++.|.||+||..+||+|++... ...+|+.+||.-+.+... ..++||. .|.++.+. ....+..+|+|||
T Consensus 339 vll~GEtGtGKe~laraiH~~s~-~~gpfvAvNCaAip~~liesELFGy~-~GafTga~~kG~~g~~~~A~gGtlFldeI 416 (606)
T COG3284 339 VLLQGETGTGKEVLARAIHQNSE-AAGPFVAVNCAAIPEALIESELFGYV-AGAFTGARRKGYKGKLEQADGGTLFLDEI 416 (606)
T ss_pred eEecCCcchhHHHHHHHHHhccc-ccCCeEEEEeccchHHhhhHHHhccC-ccccccchhccccccceecCCCccHHHHh
Confidence 99999999999999999999987 789999999987654221 1244443 22333332 3344568999999
Q ss_pred CCCCHHHHHHHHHHHHcceEecCCCe--EeecCceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhcccc
Q 001788 739 DEADMVVRGNIKRAMERGRLVDSYGR--EISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKT 816 (1013)
Q Consensus 739 dka~~~vq~~LL~~le~G~l~d~~g~--~vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~ 816 (1013)
..|+...|..||+++++|.++.-+|. +||++ ||.+|+.
T Consensus 417 gd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdir---vi~ath~------------------------------------- 456 (606)
T COG3284 417 GDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIR---VIAATHR------------------------------------- 456 (606)
T ss_pred hhchHHHHHHHHHHHhhCceeccCCcceeEEEE---EEeccCc-------------------------------------
Confidence 99999999999999999999987775 55655 8998863
Q ss_pred ccccccchhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhc
Q 001788 817 TKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVD 896 (1013)
Q Consensus 817 ~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid 896 (1013)
||+.-+.++ .|+.+|++|+.
T Consensus 457 ---------------------------dl~~lv~~g---------------------------------~fredLyyrL~ 476 (606)
T COG3284 457 ---------------------------DLAQLVEQG---------------------------------RFREDLYYRLN 476 (606)
T ss_pred ---------------------------CHHHHHHcC---------------------------------CchHHHHHHhc
Confidence 333333222 79999999996
Q ss_pred c-ceecCCCCh-hhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHHHhCCCCCh-HHHHHHHHHHH
Q 001788 897 S-AIVFKPVDF-GRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLVGGVWLGR-TGLEDWTEKVL 960 (1013)
Q Consensus 897 ~-iV~F~Pl~~-~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~~~~~~ga-r~l~~~ie~~l 960 (1013)
. .|...||.. .|-...+.+.+.+. ....+.++++++..|..+.|+|| |+|.++|+...
T Consensus 477 ~~~i~lP~lr~R~d~~~~l~~~~~~~------~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~ 537 (606)
T COG3284 477 AFVITLPPLRERSDRIPLLDRILKRE------NDWRLQLDDDALARLLAYRWPGNIRELDNVIERLA 537 (606)
T ss_pred CeeeccCchhcccccHHHHHHHHHHc------cCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHH
Confidence 5 666777773 33333333333321 13568999999999999999999 89999888653
No 58
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=1.2e-12 Score=155.99 Aligned_cols=185 Identities=14% Similarity=0.173 Sum_probs=130.5
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCc---------------
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPI--------------- 695 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~--------------- 695 (1013)
+.|+||+++++.+.+++...+... + +||+||+|||||++|+.||+.++.....
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~h-------a-----~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~ 83 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHH-------A-----YLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREID 83 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCe-------e-----EEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHh
Confidence 458999999999999886543311 2 8999999999999999999999754211
Q ss_pred ------eeeeCCCCCCCCCcccccccchhhhHHHHHHc----CCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeE
Q 001788 696 ------MIPLGPRRDHEEPEVRVRGKTALDKIGEAVKR----NPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGRE 765 (1013)
Q Consensus 696 ------~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~----~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~ 765 (1013)
++.+|.+ ...|.+....+.+.+.. .++.|+||||+|+++...+|.|++.||+-
T Consensus 84 ~g~~~d~~eidaa--------s~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEep--------- 146 (509)
T PRK14958 84 EGRFPDLFEVDAA--------SRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEP--------- 146 (509)
T ss_pred cCCCceEEEEccc--------ccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhcc---------
Confidence 1222211 12333333445554443 34679999999999999999999999962
Q ss_pred eecCceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccch
Q 001788 766 ISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDL 845 (1013)
Q Consensus 766 vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldL 845 (1013)
-.+++||++|+-- +
T Consensus 147 --p~~~~fIlattd~--------------------------------------~-------------------------- 160 (509)
T PRK14958 147 --PSHVKFILATTDH--------------------------------------H-------------------------- 160 (509)
T ss_pred --CCCeEEEEEECCh--------------------------------------H--------------------------
Confidence 1356688887410 0
Q ss_pred hhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhh
Q 001788 846 NKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSII 925 (1013)
Q Consensus 846 n~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~ 925 (1013)
...+.+++|+ .+|.|+|++.+++.+.+...+.+
T Consensus 161 ----------------------------------------kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~------ 193 (509)
T PRK14958 161 ----------------------------------------KLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKE------ 193 (509)
T ss_pred ----------------------------------------hchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHH------
Confidence 1234588888 88999999999988877665542
Q ss_pred cCCcceecCHHHHHHHHhCCCCChHHHHHHHHHHH
Q 001788 926 GDALSIEILDEALEKLVGGVWLGRTGLEDWTEKVL 960 (1013)
Q Consensus 926 ~~~~~L~id~~a~~~L~~~~~~gar~l~~~ie~~l 960 (1013)
-.+.++++++++|+..+-.+-|...+++++.+
T Consensus 194 ---egi~~~~~al~~ia~~s~GslR~al~lLdq~i 225 (509)
T PRK14958 194 ---ENVEFENAALDLLARAANGSVRDALSLLDQSI 225 (509)
T ss_pred ---cCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 13567899999999887555577777776553
No 59
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=1.1e-12 Score=156.57 Aligned_cols=185 Identities=14% Similarity=0.209 Sum_probs=129.2
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCC----------------
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASP---------------- 694 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~---------------- 694 (1013)
+.|+||+++++.+..++...+.. .+ +||+||+|+|||++|+.+|+.+.....
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~-------HA-----yLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~ 82 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLH-------HA-----YLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVN 82 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCC-------eE-----EEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHh
Confidence 45899999999999888633321 12 899999999999999999999975311
Q ss_pred -----ceeeeCCCCCCCCCcccccccchhhhHHHHHHc----CCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeE
Q 001788 695 -----IMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKR----NPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGRE 765 (1013)
Q Consensus 695 -----~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~----~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~ 765 (1013)
.++.+|.+. ..+.+....+.+.+.. .++.|+||||+|+++...++.|++.|++..
T Consensus 83 ~g~hpDviEIDAAs--------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP-------- 146 (702)
T PRK14960 83 EGRFIDLIEIDAAS--------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPP-------- 146 (702)
T ss_pred cCCCCceEEecccc--------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCC--------
Confidence 112222211 1222223334443332 346899999999999999999999998621
Q ss_pred eecCceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccch
Q 001788 766 ISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDL 845 (1013)
Q Consensus 766 vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldL 845 (1013)
.+++||++|+-..
T Consensus 147 ---~~v~FILaTtd~~---------------------------------------------------------------- 159 (702)
T PRK14960 147 ---EHVKFLFATTDPQ---------------------------------------------------------------- 159 (702)
T ss_pred ---CCcEEEEEECChH----------------------------------------------------------------
Confidence 2445888875100
Q ss_pred hhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhh
Q 001788 846 NKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSII 925 (1013)
Q Consensus 846 n~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~ 925 (1013)
.+.+.+++|+ .+|.|+|++.+++.+.+...+.+
T Consensus 160 ----------------------------------------kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~k------ 192 (702)
T PRK14960 160 ----------------------------------------KLPITVISRC-LQFTLRPLAVDEITKHLGAILEK------ 192 (702)
T ss_pred ----------------------------------------hhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHH------
Confidence 2344677888 89999999999999888766543
Q ss_pred cCCcceecCHHHHHHHHhCCCCChHHHHHHHHHHH
Q 001788 926 GDALSIEILDEALEKLVGGVWLGRTGLEDWTEKVL 960 (1013)
Q Consensus 926 ~~~~~L~id~~a~~~L~~~~~~gar~l~~~ie~~l 960 (1013)
-.+.++++++++|+..+-.+-|...+.+++.+
T Consensus 193 ---EgI~id~eAL~~IA~~S~GdLRdALnLLDQaI 224 (702)
T PRK14960 193 ---EQIAADQDAIWQIAESAQGSLRDALSLTDQAI 224 (702)
T ss_pred ---cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 14678999999999887555576666665543
No 60
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=1.5e-12 Score=162.17 Aligned_cols=185 Identities=12% Similarity=0.127 Sum_probs=128.2
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCC----------------
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASP---------------- 694 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~---------------- 694 (1013)
++||||+++++.|..+|...+.. ..+||+||+|||||++|+.||+.|+....
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~------------Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~ 82 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRIN------------HAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALA 82 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCC------------ceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHH
Confidence 46899999999999888643321 12899999999999999999999974321
Q ss_pred -------ceeeeCCCCCCCCCcccccccchhhhHHHHHH----cCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCC
Q 001788 695 -------IMIPLGPRRDHEEPEVRVRGKTALDKIGEAVK----RNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYG 763 (1013)
Q Consensus 695 -------~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~----~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g 763 (1013)
.++.+|.. ...|.+....+.+.+. ...+.|+||||+|+++...+|.||++||+-
T Consensus 83 ~g~~~~~dv~eidaa--------s~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEp------- 147 (824)
T PRK07764 83 PGGPGSLDVTEIDAA--------SHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEP------- 147 (824)
T ss_pred cCCCCCCcEEEeccc--------ccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCC-------
Confidence 01111111 0122222333333322 245789999999999999999999999961
Q ss_pred eEeecCceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCccc
Q 001788 764 REISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSF 843 (1013)
Q Consensus 764 ~~vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~l 843 (1013)
-.+++|||+|+-- +
T Consensus 148 ----P~~~~fIl~tt~~-~------------------------------------------------------------- 161 (824)
T PRK07764 148 ----PEHLKFIFATTEP-D------------------------------------------------------------- 161 (824)
T ss_pred ----CCCeEEEEEeCCh-h-------------------------------------------------------------
Confidence 1356788887510 0
Q ss_pred chhhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHH
Q 001788 844 DLNKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSS 923 (1013)
Q Consensus 844 dLn~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~ 923 (1013)
.+.+.+.+|+ .+|.|++++.+++.+++...+.+
T Consensus 162 ------------------------------------------kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~---- 194 (824)
T PRK07764 162 ------------------------------------------KVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQ---- 194 (824)
T ss_pred ------------------------------------------hhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHH----
Confidence 2334577887 89999999999999888765532
Q ss_pred hhcCCcceecCHHHHHHHHhCCCCChHHHHHHHHHHH
Q 001788 924 IIGDALSIEILDEALEKLVGGVWLGRTGLEDWTEKVL 960 (1013)
Q Consensus 924 ~~~~~~~L~id~~a~~~L~~~~~~gar~l~~~ie~~l 960 (1013)
-.+.++++++.+|+..+....|.+.+.|++++
T Consensus 195 -----EGv~id~eal~lLa~~sgGdlR~Al~eLEKLi 226 (824)
T PRK07764 195 -----EGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLL 226 (824)
T ss_pred -----cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 13568999999998876555566667776654
No 61
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.44 E-value=2.3e-12 Score=149.64 Aligned_cols=140 Identities=15% Similarity=0.193 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceee
Q 001788 619 PDSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIP 698 (1013)
Q Consensus 619 ~e~l~~L~~~L~~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~ 698 (1013)
.+.+..+.+.|.+.|+|++++|+.+..++.... + +||.||||||||++|++||+.+.+.. +|..
T Consensus 8 ~~~i~~l~~~l~~~i~gre~vI~lll~aalag~----------h-----VLL~GpPGTGKT~LAraLa~~~~~~~-~F~~ 71 (498)
T PRK13531 8 AERISRLSSALEKGLYERSHAIRLCLLAALSGE----------S-----VFLLGPPGIAKSLIARRLKFAFQNAR-AFEY 71 (498)
T ss_pred HHHHHHHHHHHhhhccCcHHHHHHHHHHHccCC----------C-----EEEECCCChhHHHHHHHHHHHhcccC-ccee
Confidence 467889999999999999999999888774111 1 99999999999999999999876443 4554
Q ss_pred eCCCCCCCCCcccccccc------hhhhHHHHHHcC---CCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecC
Q 001788 699 LGPRRDHEEPEVRVRGKT------ALDKIGEAVKRN---PFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLG 769 (1013)
Q Consensus 699 id~s~~~~~~~~g~~G~~------~~~~L~eal~~~---p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~ 769 (1013)
+.+.-. .+...+|.. ..+.+.. .... ...++|+|||.++++.+|+.||++|++++++. +|+...+.
T Consensus 72 ~~~~ft---tp~DLfG~l~i~~~~~~g~f~r-~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~-g~~~~~lp 146 (498)
T PRK13531 72 LMTRFS---TPEEVFGPLSIQALKDEGRYQR-LTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRN-GAHEEKIP 146 (498)
T ss_pred eeeeec---CcHHhcCcHHHhhhhhcCchhh-hcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEec-CCeEEeCC
Confidence 443310 122233321 0111111 1111 12489999999999999999999999999996 67777777
Q ss_pred ceEEEEecCC
Q 001788 770 NVIFILTADW 779 (1013)
Q Consensus 770 n~iiI~TSN~ 779 (1013)
--+||.+||-
T Consensus 147 ~rfiv~ATN~ 156 (498)
T PRK13531 147 MRLLVTASNE 156 (498)
T ss_pred CcEEEEECCC
Confidence 7778888873
No 62
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=1.7e-12 Score=154.72 Aligned_cols=185 Identities=16% Similarity=0.191 Sum_probs=130.8
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCC----------------
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASP---------------- 694 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~---------------- 694 (1013)
+.|+||++++..+..++...+.. . .+||+||+|+|||++|+.+|+.++....
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~-------h-----a~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~ 83 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVH-------H-----AYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAIN 83 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCC-------e-----EEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Confidence 45899999999988888633221 1 2899999999999999999999875311
Q ss_pred -----ceeeeCCCCCCCCCcccccccchhhhHHHHHHc----CCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeE
Q 001788 695 -----IMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKR----NPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGRE 765 (1013)
Q Consensus 695 -----~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~----~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~ 765 (1013)
.++.+|.. ...|.+....+.+.+.. ..+.|+||||+|+++...++.||+.||+..
T Consensus 84 ~~~~~dlieidaa--------s~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp-------- 147 (546)
T PRK14957 84 NNSFIDLIEIDAA--------SRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPP-------- 147 (546)
T ss_pred cCCCCceEEeecc--------cccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCC--------
Confidence 11111111 12344444455555443 346799999999999999999999999732
Q ss_pred eecCceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccch
Q 001788 766 ISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDL 845 (1013)
Q Consensus 766 vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldL 845 (1013)
.+++||++|+-. +
T Consensus 148 ---~~v~fIL~Ttd~--------------------------------------~-------------------------- 160 (546)
T PRK14957 148 ---EYVKFILATTDY--------------------------------------H-------------------------- 160 (546)
T ss_pred ---CCceEEEEECCh--------------------------------------h--------------------------
Confidence 345578777410 0
Q ss_pred hhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhh
Q 001788 846 NKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSII 925 (1013)
Q Consensus 846 n~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~ 925 (1013)
...+.+++|. .+|.|+|++.+++.+.+...+.+
T Consensus 161 ----------------------------------------kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~------ 193 (546)
T PRK14957 161 ----------------------------------------KIPVTILSRC-IQLHLKHISQADIKDQLKIILAK------ 193 (546)
T ss_pred ----------------------------------------hhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHH------
Confidence 1233588888 99999999999999887765543
Q ss_pred cCCcceecCHHHHHHHHhCCCCChHHHHHHHHHHH
Q 001788 926 GDALSIEILDEALEKLVGGVWLGRTGLEDWTEKVL 960 (1013)
Q Consensus 926 ~~~~~L~id~~a~~~L~~~~~~gar~l~~~ie~~l 960 (1013)
..+.++++++++|+..+-...|.+.+.+++.+
T Consensus 194 ---egi~~e~~Al~~Ia~~s~GdlR~alnlLek~i 225 (546)
T PRK14957 194 ---ENINSDEQSLEYIAYHAKGSLRDALSLLDQAI 225 (546)
T ss_pred ---cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 13678999999999987555677777777544
No 63
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.43 E-value=2.7e-12 Score=138.60 Aligned_cols=121 Identities=19% Similarity=0.347 Sum_probs=82.6
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCC---CceeeeCCCCCCCC
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGAS---PIMIPLGPRRDHEE 707 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~---~~~i~id~s~~~~~ 707 (1013)
..+.||++++..+.+++.+ +- .+. +||+||||||||..|+++|+.+|+.+ ..+...+.|...+-
T Consensus 36 de~~gQe~vV~~L~~a~~~-~~-------lp~-----~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGi 102 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR-RI-------LPH-----YLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGI 102 (346)
T ss_pred HhhcchHHHHHHHHHHHhh-cC-------Cce-----EEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccc
Confidence 3579999999999999975 22 112 99999999999999999999999831 12233344432211
Q ss_pred Ccccccccch---hhhHHHHHH------cCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecC
Q 001788 708 PEVRVRGKTA---LDKIGEAVK------RNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778 (1013)
Q Consensus 708 ~~~g~~G~~~---~~~L~eal~------~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN 778 (1013)
. ++.+. ...+..... ..|+.||+|||.|-|..+.|..|.+.||+ + -++++||+-||
T Consensus 103 s----vvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~--~---------s~~trFiLIcn 167 (346)
T KOG0989|consen 103 S----VVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMED--F---------SRTTRFILICN 167 (346)
T ss_pred c----chhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhc--c---------ccceEEEEEcC
Confidence 1 11000 112222221 24568999999999999999999999985 1 14567999997
Q ss_pred C
Q 001788 779 W 779 (1013)
Q Consensus 779 ~ 779 (1013)
.
T Consensus 168 y 168 (346)
T KOG0989|consen 168 Y 168 (346)
T ss_pred C
Confidence 3
No 64
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.42 E-value=4.4e-12 Score=142.50 Aligned_cols=193 Identities=13% Similarity=0.115 Sum_probs=124.8
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcc
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEV 710 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~ 710 (1013)
+.++||++.++.+...+........ +... ++|+||+|||||.+|+++|+.+. ..+..++.+..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~---~~~~-----~ll~Gp~G~GKT~la~~ia~~~~---~~~~~~~~~~~------ 66 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQE---ALDH-----LLLYGPPGLGKTTLAHIIANEMG---VNLKITSGPAL------ 66 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCC---CCCe-----EEEECCCCCCHHHHHHHHHHHhC---CCEEEeccchh------
Confidence 4589999999998888854432211 1112 89999999999999999999885 23333332210
Q ss_pred cccccchhhhHHHHHHc-CCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecC--CC-----eEeecCceEEEEecCCCCc
Q 001788 711 RVRGKTALDKIGEAVKR-NPFSVILLEDIDEADMVVRGNIKRAMERGRLVDS--YG-----REISLGNVIFILTADWLPD 782 (1013)
Q Consensus 711 g~~G~~~~~~L~eal~~-~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~--~g-----~~vd~~n~iiI~TSN~g~~ 782 (1013)
...+.+.+.+.. ....|+|||||+++++..++.|+.+|++....-. .+ -.......++|.+||..
T Consensus 67 -----~~~~~l~~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~-- 139 (305)
T TIGR00635 67 -----EKPGDLAAILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA-- 139 (305)
T ss_pred -----cCchhHHHHHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCc--
Confidence 011223333322 3357999999999999999999999987653200 00 00011111122222100
Q ss_pred chhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCC
Q 001788 783 SLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSS 862 (1013)
Q Consensus 783 ~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~s 862 (1013)
T Consensus 140 -------------------------------------------------------------------------------- 139 (305)
T TIGR00635 140 -------------------------------------------------------------------------------- 139 (305)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHHH
Q 001788 863 DLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLV 942 (1013)
Q Consensus 863 d~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~ 942 (1013)
..+.+.|.+|+..++.|.|++.+++.+++...... ..+.++++++++|+
T Consensus 140 ----------------------~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~---------~~~~~~~~al~~ia 188 (305)
T TIGR00635 140 ----------------------GMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGL---------LNVEIEPEAALEIA 188 (305)
T ss_pred ----------------------cccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHH---------hCCCcCHHHHHHHH
Confidence 03556799999888999999999999998765432 24578999999999
Q ss_pred hCCCCChHHHHHHHHH
Q 001788 943 GGVWLGRTGLEDWTEK 958 (1013)
Q Consensus 943 ~~~~~gar~l~~~ie~ 958 (1013)
..+....|.+.++++.
T Consensus 189 ~~~~G~pR~~~~ll~~ 204 (305)
T TIGR00635 189 RRSRGTPRIANRLLRR 204 (305)
T ss_pred HHhCCCcchHHHHHHH
Confidence 9875444655555554
No 65
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=2.6e-12 Score=155.41 Aligned_cols=190 Identities=17% Similarity=0.182 Sum_probs=128.2
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCC------
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRD------ 704 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~------ 704 (1013)
+.|+||++++..+..++...+.. .. +||+||+|+|||++|+.+|+.++.... .....|..+
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~-------hA-----yLf~Gp~GvGKTTlAr~lAk~L~c~~~-~~~~pCg~C~~C~~i 82 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLH-------HA-----YLFSGTRGVGKTTIARLLAKGLNCETG-ITATPCGECDNCREI 82 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCC-------eE-----EEEECCCCCCHHHHHHHHHHhhhhccC-CCCCCCCCCHHHHHH
Confidence 56899999999988888643321 11 799999999999999999999976321 000001100
Q ss_pred CCCCcc--------cccccchhhhHHHHHHc----CCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceE
Q 001788 705 HEEPEV--------RVRGKTALDKIGEAVKR----NPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVI 772 (1013)
Q Consensus 705 ~~~~~~--------g~~G~~~~~~L~eal~~----~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~i 772 (1013)
..+..+ ...+.+....+.+.+.. .++.|+||||+|+++...+|.||+.||+- -.+++
T Consensus 83 ~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEP-----------p~~v~ 151 (647)
T PRK07994 83 EQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-----------PEHVK 151 (647)
T ss_pred HcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcC-----------CCCeE
Confidence 001001 01233333444444443 35689999999999999999999999962 13456
Q ss_pred EEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccC
Q 001788 773 FILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVG 852 (1013)
Q Consensus 773 iI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~ 852 (1013)
||++|+--
T Consensus 152 FIL~Tt~~------------------------------------------------------------------------ 159 (647)
T PRK07994 152 FLLATTDP------------------------------------------------------------------------ 159 (647)
T ss_pred EEEecCCc------------------------------------------------------------------------
Confidence 88887510
Q ss_pred CCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhhcCCccee
Q 001788 853 DDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGDALSIE 932 (1013)
Q Consensus 853 ~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~ 932 (1013)
....+-+++|+ ..|.|+|++.+++...+...+... .+.
T Consensus 160 --------------------------------~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e---------~i~ 197 (647)
T PRK07994 160 --------------------------------QKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAE---------QIP 197 (647)
T ss_pred --------------------------------cccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHc---------CCC
Confidence 02345688898 899999999999988877655321 357
Q ss_pred cCHHHHHHHHhCCCCChHHHHHHHHH
Q 001788 933 ILDEALEKLVGGVWLGRTGLEDWTEK 958 (1013)
Q Consensus 933 id~~a~~~L~~~~~~gar~l~~~ie~ 958 (1013)
++++++..|+..+-...|...+++++
T Consensus 198 ~e~~aL~~Ia~~s~Gs~R~Al~lldq 223 (647)
T PRK07994 198 FEPRALQLLARAADGSMRDALSLTDQ 223 (647)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 88999999998765555655555544
No 66
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=2.6e-12 Score=155.04 Aligned_cols=192 Identities=16% Similarity=0.192 Sum_probs=128.5
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCc---eeee-CCCC---
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPI---MIPL-GPRR--- 703 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~---~i~i-d~s~--- 703 (1013)
+.|+||++++..|.+++...+.. ..+||+||+|+|||++|+.||+.++..... -+.. .|..
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~------------ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~ 83 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLH------------HAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQA 83 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCC------------eEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHH
Confidence 45899999999998888644321 128999999999999999999999742110 0000 0000
Q ss_pred ---CCCCCccc--------ccccchhhhHHHHHHcCC----CEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeec
Q 001788 704 ---DHEEPEVR--------VRGKTALDKIGEAVKRNP----FSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISL 768 (1013)
Q Consensus 704 ---~~~~~~~g--------~~G~~~~~~L~eal~~~p----~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~ 768 (1013)
...+..+. ..|.+....+.+.+...| +.|++|||+|.++...+|.||+.||+-.
T Consensus 84 C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP----------- 152 (618)
T PRK14951 84 CRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPP----------- 152 (618)
T ss_pred HHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCC-----------
Confidence 00011111 223333444555554444 6899999999999999999999998621
Q ss_pred CceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhh
Q 001788 769 GNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKA 848 (1013)
Q Consensus 769 ~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~ 848 (1013)
.+++||++|+-- +
T Consensus 153 ~~~~fIL~Ttd~--------------------------------------~----------------------------- 165 (618)
T PRK14951 153 EYLKFVLATTDP--------------------------------------Q----------------------------- 165 (618)
T ss_pred CCeEEEEEECCc--------------------------------------h-----------------------------
Confidence 345688887410 0
Q ss_pred hccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhhcCC
Q 001788 849 ADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGDA 928 (1013)
Q Consensus 849 ~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~ 928 (1013)
...+.+++|. .+|.|++++.+++.+.+...+.+
T Consensus 166 -------------------------------------kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~--------- 198 (618)
T PRK14951 166 -------------------------------------KVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAA--------- 198 (618)
T ss_pred -------------------------------------hhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHH---------
Confidence 1233588888 89999999999998888765432
Q ss_pred cceecCHHHHHHHHhCCCCChHHHHHHHHHH
Q 001788 929 LSIEILDEALEKLVGGVWLGRTGLEDWTEKV 959 (1013)
Q Consensus 929 ~~L~id~~a~~~L~~~~~~gar~l~~~ie~~ 959 (1013)
..+.++++++++|+..+-.+-|.+.+++++.
T Consensus 199 egi~ie~~AL~~La~~s~GslR~al~lLdq~ 229 (618)
T PRK14951 199 ENVPAEPQALRLLARAARGSMRDALSLTDQA 229 (618)
T ss_pred cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1457899999999987655557666666543
No 67
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=3.4e-12 Score=153.57 Aligned_cols=185 Identities=11% Similarity=0.142 Sum_probs=129.8
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCC----------------
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASP---------------- 694 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~---------------- 694 (1013)
+.|+||+++++.+..++...+.. ..+||+||+|+|||++|+.+|+.++....
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~------------ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRIN------------HAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCC------------eEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhh
Confidence 46899999999999988643221 12899999999999999999999985321
Q ss_pred -------ceeeeCCCCCCCCCcccccccchhhhHHHHHHc----CCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCC
Q 001788 695 -------IMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKR----NPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYG 763 (1013)
Q Consensus 695 -------~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~----~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g 763 (1013)
.++.+|.+ ...|.+....+.+.+.. .++.|++|||+|.++...+|.||+.||+-
T Consensus 81 ~~~~~~~dvieidaa--------s~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEp------- 145 (584)
T PRK14952 81 PNGPGSIDVVELDAA--------SHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEP------- 145 (584)
T ss_pred cccCCCceEEEeccc--------cccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcC-------
Confidence 11122211 11233333444444433 45689999999999999999999999961
Q ss_pred eEeecCceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCccc
Q 001788 764 REISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSF 843 (1013)
Q Consensus 764 ~~vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~l 843 (1013)
-.+++||++|+--
T Consensus 146 ----p~~~~fIL~tte~--------------------------------------------------------------- 158 (584)
T PRK14952 146 ----PEHLIFIFATTEP--------------------------------------------------------------- 158 (584)
T ss_pred ----CCCeEEEEEeCCh---------------------------------------------------------------
Confidence 1356788887410
Q ss_pred chhhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHH
Q 001788 844 DLNKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSS 923 (1013)
Q Consensus 844 dLn~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~ 923 (1013)
..+.+.+.+|. ..|.|++++.+++.+.+...+.+
T Consensus 159 -----------------------------------------~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~---- 192 (584)
T PRK14952 159 -----------------------------------------EKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQ---- 192 (584)
T ss_pred -----------------------------------------HhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHH----
Confidence 02455788887 89999999999988777654432
Q ss_pred hhcCCcceecCHHHHHHHHhCCCCChHHHHHHHHHHH
Q 001788 924 IIGDALSIEILDEALEKLVGGVWLGRTGLEDWTEKVL 960 (1013)
Q Consensus 924 ~~~~~~~L~id~~a~~~L~~~~~~gar~l~~~ie~~l 960 (1013)
-.+.++++++.+|+..+-.+.|...+.+++.+
T Consensus 193 -----egi~i~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 193 -----EGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred -----cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 13578999999998877655676666666543
No 68
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=3.3e-12 Score=150.40 Aligned_cols=185 Identities=16% Similarity=0.177 Sum_probs=131.2
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCC-----------------
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGAS----------------- 693 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~----------------- 693 (1013)
+.|+||+++++.+.+++...+.. .+ +||+||+|+|||++|+.+|+.+....
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~-------ha-----~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~ 80 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIP-------QS-----ILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIK 80 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCC-------ce-----EEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHh
Confidence 45899999999888877633221 12 99999999999999999999875321
Q ss_pred ----CceeeeCCCCCCCCCcccccccchhhhHHHHHHcCC----CEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeE
Q 001788 694 ----PIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKRNP----FSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGRE 765 (1013)
Q Consensus 694 ----~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~~p----~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~ 765 (1013)
..++.+|.+ ...|.+....+.+.+...| +.|++|||+|.++...+|.|++.||+-.
T Consensus 81 ~~~~~Dv~eidaa--------s~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp-------- 144 (491)
T PRK14964 81 NSNHPDVIEIDAA--------SNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPA-------- 144 (491)
T ss_pred ccCCCCEEEEecc--------cCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCC--------
Confidence 122333332 1334444455556555444 5799999999999999999999999622
Q ss_pred eecCceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccch
Q 001788 766 ISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDL 845 (1013)
Q Consensus 766 vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldL 845 (1013)
.+++||++|+--
T Consensus 145 ---~~v~fIlatte~----------------------------------------------------------------- 156 (491)
T PRK14964 145 ---PHVKFILATTEV----------------------------------------------------------------- 156 (491)
T ss_pred ---CCeEEEEEeCCh-----------------------------------------------------------------
Confidence 346688887410
Q ss_pred hhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhh
Q 001788 846 NKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSII 925 (1013)
Q Consensus 846 n~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~ 925 (1013)
+.+.+.+.+|. ..|.|+|++.+++.+.+...+.+
T Consensus 157 ---------------------------------------~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~------ 190 (491)
T PRK14964 157 ---------------------------------------KKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKK------ 190 (491)
T ss_pred ---------------------------------------HHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHH------
Confidence 02344677888 78999999999998887665542
Q ss_pred cCCcceecCHHHHHHHHhCCCCChHHHHHHHHHHH
Q 001788 926 GDALSIEILDEALEKLVGGVWLGRTGLEDWTEKVL 960 (1013)
Q Consensus 926 ~~~~~L~id~~a~~~L~~~~~~gar~l~~~ie~~l 960 (1013)
-.+.++++++++|+..+-.+-|.+.+++++.+
T Consensus 191 ---Egi~i~~eAL~lIa~~s~GslR~alslLdqli 222 (491)
T PRK14964 191 ---ENIEHDEESLKLIAENSSGSMRNALFLLEQAA 222 (491)
T ss_pred ---cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 14578999999999887655576666666654
No 69
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=2.3e-12 Score=152.18 Aligned_cols=184 Identities=18% Similarity=0.266 Sum_probs=127.4
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCC----------------
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASP---------------- 694 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~---------------- 694 (1013)
+.|+||++++..+..++...+. ..+ +||+||||||||++|+.+|+.+.....
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l-------~~~-----~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~ 81 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSI-------SHA-----YIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSID 81 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCC-------CeE-----EEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHh
Confidence 4589999998888777653221 112 899999999999999999999875321
Q ss_pred -----ceeeeCCCCCCCCCcccccccchhhhHHHHHHcC----CCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeE
Q 001788 695 -----IMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKRN----PFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGRE 765 (1013)
Q Consensus 695 -----~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~~----p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~ 765 (1013)
.++.+|.+. ..|.+....+.+.+... .+.||||||+|.+....|+.|++.+++..
T Consensus 82 ~g~~~dv~el~aa~--------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~-------- 145 (472)
T PRK14962 82 EGTFMDVIELDAAS--------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPP-------- 145 (472)
T ss_pred cCCCCccEEEeCcc--------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCC--------
Confidence 122222221 22333333444444433 35799999999999999999999998511
Q ss_pred eecCceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccch
Q 001788 766 ISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDL 845 (1013)
Q Consensus 766 vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldL 845 (1013)
.+++||++||- ..
T Consensus 146 ---~~vv~Ilattn-~~--------------------------------------------------------------- 158 (472)
T PRK14962 146 ---SHVVFVLATTN-LE--------------------------------------------------------------- 158 (472)
T ss_pred ---CcEEEEEEeCC-hH---------------------------------------------------------------
Confidence 24567777641 00
Q ss_pred hhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhh
Q 001788 846 NKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSII 925 (1013)
Q Consensus 846 n~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~ 925 (1013)
.+.+.+..|. .+|.|.|++.+++..++...+..
T Consensus 159 ----------------------------------------kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~------ 191 (472)
T PRK14962 159 ----------------------------------------KVPPTIISRC-QVIEFRNISDELIIKRLQEVAEA------ 191 (472)
T ss_pred ----------------------------------------hhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHH------
Confidence 2344677787 68999999999998887765432
Q ss_pred cCCcceecCHHHHHHHHhCCCCChHHHHHHHHHH
Q 001788 926 GDALSIEILDEALEKLVGGVWLGRTGLEDWTEKV 959 (1013)
Q Consensus 926 ~~~~~L~id~~a~~~L~~~~~~gar~l~~~ie~~ 959 (1013)
-.+.++++++++|+..+..+.|.+-+.++..
T Consensus 192 ---egi~i~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 192 ---EGIEIDREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred ---cCCCCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 1457899999999998766778776777653
No 70
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.41 E-value=1.7e-12 Score=136.50 Aligned_cols=204 Identities=17% Similarity=0.209 Sum_probs=133.3
Q ss_pred hccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCc
Q 001788 630 MEKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPE 709 (1013)
Q Consensus 630 ~~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~ 709 (1013)
.+.||||++|...- ..|.........-+..+.|. +||+||||||||.+|++||.... .||+.+...+.-+.
T Consensus 120 ~ddViGqEeAK~kc-rli~~yLenPe~Fg~WAPkn---VLFyGppGTGKTm~Akalane~k---vp~l~vkat~liGe-- 190 (368)
T COG1223 120 LDDVIGQEEAKRKC-RLIMEYLENPERFGDWAPKN---VLFYGPPGTGKTMMAKALANEAK---VPLLLVKATELIGE-- 190 (368)
T ss_pred HhhhhchHHHHHHH-HHHHHHhhChHHhcccCcce---eEEECCCCccHHHHHHHHhcccC---CceEEechHHHHHH--
Confidence 46799999998763 33332211111111112222 99999999999999999999664 89999988764332
Q ss_pred ccccccc--hhhhHHHHHHcCCCEEEEEeCCCCCC------------HHHHHHHHHHHHcceEecCCCeEeecCceEEEE
Q 001788 710 VRVRGKT--ALDKIGEAVKRNPFSVILLEDIDEAD------------MVVRGNIKRAMERGRLVDSYGREISLGNVIFIL 775 (1013)
Q Consensus 710 ~g~~G~~--~~~~L~eal~~~p~~VV~lDEIdka~------------~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~ 775 (1013)
|+|.. ....|++..++...|||||||+|-.. .++.|.||.-|+ |.- .+. .++.|+
T Consensus 191 --hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelD-gi~-ene-------GVvtIa 259 (368)
T COG1223 191 --HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELD-GIK-ENE-------GVVTIA 259 (368)
T ss_pred --HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhcc-Ccc-cCC-------ceEEEe
Confidence 45432 23457777777666999999999653 247788887774 221 222 345788
Q ss_pred ecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCCCC
Q 001788 776 TADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDK 855 (1013)
Q Consensus 776 TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~ 855 (1013)
+||.-
T Consensus 260 aTN~p--------------------------------------------------------------------------- 264 (368)
T COG1223 260 ATNRP--------------------------------------------------------------------------- 264 (368)
T ss_pred ecCCh---------------------------------------------------------------------------
Confidence 88730
Q ss_pred CCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhhcCCcceecCH
Q 001788 856 DGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGDALSIEILD 935 (1013)
Q Consensus 856 ~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~id~ 935 (1013)
..+.|.+.+|+.+-|.|+-.+.++..+|+...+.+ .-+.++.
T Consensus 265 -----------------------------~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~---------~Plpv~~ 306 (368)
T COG1223 265 -----------------------------ELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKK---------FPLPVDA 306 (368)
T ss_pred -----------------------------hhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHh---------CCCcccc
Confidence 03456788999899999999999999888776543 2344444
Q ss_pred HHHHHHHhCCC-CChHHHHHHHHHHHhHHHHHHHHc
Q 001788 936 EALEKLVGGVW-LGRTGLEDWTEKVLVPSLHQLKLR 970 (1013)
Q Consensus 936 ~a~~~L~~~~~-~gar~l~~~ie~~l~~~l~~~~~~ 970 (1013)
. +++|++..- ++.|. +.++++.++|.+.+..
T Consensus 307 ~-~~~~~~~t~g~SgRd---ikekvlK~aLh~Ai~e 338 (368)
T COG1223 307 D-LRYLAAKTKGMSGRD---IKEKVLKTALHRAIAE 338 (368)
T ss_pred C-HHHHHHHhCCCCchh---HHHHHHHHHHHHHHHh
Confidence 4 566666542 34453 4566777777777765
No 71
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=3.5e-12 Score=153.55 Aligned_cols=193 Identities=13% Similarity=0.172 Sum_probs=129.6
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCc----e------eeeC
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPI----M------IPLG 700 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~----~------i~id 700 (1013)
+.|+||+++++.|..++...+.. .. +||+||+|+|||++|+.||+.++..... . ..++
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~-------Ha-----~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~ 83 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLH-------HA-----YLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQID 83 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCC-------eE-----EEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHh
Confidence 45899999999999988743221 12 8999999999999999999998754210 0 0011
Q ss_pred CCCCCCC---CcccccccchhhhHHHHHHc----CCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEE
Q 001788 701 PRRDHEE---PEVRVRGKTALDKIGEAVKR----NPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIF 773 (1013)
Q Consensus 701 ~s~~~~~---~~~g~~G~~~~~~L~eal~~----~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~ii 773 (1013)
...+.+- ......|.+....+.+.+.. ..+.||||||+|+++...++.||+.|++-. .+++|
T Consensus 84 ~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp-----------~~v~f 152 (709)
T PRK08691 84 AGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPP-----------EHVKF 152 (709)
T ss_pred ccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCC-----------CCcEE
Confidence 1111000 00011222223334443322 346899999999999999999999998621 34568
Q ss_pred EEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCC
Q 001788 774 ILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGD 853 (1013)
Q Consensus 774 I~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~ 853 (1013)
|++||-- +
T Consensus 153 ILaTtd~--------------------------------------~---------------------------------- 160 (709)
T PRK08691 153 ILATTDP--------------------------------------H---------------------------------- 160 (709)
T ss_pred EEEeCCc--------------------------------------c----------------------------------
Confidence 8888520 0
Q ss_pred CCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhhcCCcceec
Q 001788 854 DKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGDALSIEI 933 (1013)
Q Consensus 854 ~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~i 933 (1013)
...+.+++|+ ..|.|++++.+++..++...+.+ -.+.+
T Consensus 161 --------------------------------kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~k---------Egi~i 198 (709)
T PRK08691 161 --------------------------------KVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDS---------EKIAY 198 (709)
T ss_pred --------------------------------ccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHH---------cCCCc
Confidence 2234577888 88999999999999888765442 13678
Q ss_pred CHHHHHHHHhCCCCChHHHHHHHHHHH
Q 001788 934 LDEALEKLVGGVWLGRTGLEDWTEKVL 960 (1013)
Q Consensus 934 d~~a~~~L~~~~~~gar~l~~~ie~~l 960 (1013)
+++++++|+..+-.+.|.+.+++++.+
T Consensus 199 d~eAL~~Ia~~A~GslRdAlnLLDqai 225 (709)
T PRK08691 199 EPPALQLLGRAAAGSMRDALSLLDQAI 225 (709)
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999999987666687777776654
No 72
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.41 E-value=3.3e-12 Score=149.62 Aligned_cols=182 Identities=18% Similarity=0.241 Sum_probs=128.7
Q ss_pred ccccccHHHHHH---HHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCC
Q 001788 631 EKVWWQQEAASA---VATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEE 707 (1013)
Q Consensus 631 ~~ViGQ~~ai~~---I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~ 707 (1013)
+.++||++++.. +...+...+ .++ ++|+||+|||||++|+.|++.+. ..|+.+++...
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~--------~~~-----ilL~GppGtGKTtLA~~ia~~~~---~~~~~l~a~~~--- 72 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGR--------LSS-----MILWGPPGTGKTTLARIIAGATD---APFEALSAVTS--- 72 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCC--------Cce-----EEEECCCCCCHHHHHHHHHHHhC---CCEEEEecccc---
Confidence 358999999766 666653211 123 99999999999999999999875 56787776531
Q ss_pred CcccccccchhhhHHHHHH----cCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcc
Q 001788 708 PEVRVRGKTALDKIGEAVK----RNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDS 783 (1013)
Q Consensus 708 ~~~g~~G~~~~~~L~eal~----~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~ 783 (1013)
+......+.+... ...+.||||||||+++...|+.|+..+++|.+. +|.+|+.-.
T Consensus 73 ------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~ii-------------lI~att~n~-- 131 (413)
T PRK13342 73 ------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTIT-------------LIGATTENP-- 131 (413)
T ss_pred ------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCcEE-------------EEEeCCCCh--
Confidence 2222223333322 235689999999999999999999999876532 555553100
Q ss_pred hhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCCC
Q 001788 784 LKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSD 863 (1013)
Q Consensus 784 ~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd 863 (1013)
+
T Consensus 132 ----------------------------------------------------------~--------------------- 132 (413)
T PRK13342 132 ----------------------------------------------------------S--------------------- 132 (413)
T ss_pred ----------------------------------------------------------h---------------------
Confidence 0
Q ss_pred cccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHHHh
Q 001788 864 LTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLVG 943 (1013)
Q Consensus 864 ~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~~ 943 (1013)
..+.+.+++|+ .++.|.|++.+++..++...+.... .++ +.++++++++|+.
T Consensus 133 ---------------------~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~-----~~~-i~i~~~al~~l~~ 184 (413)
T PRK13342 133 ---------------------FEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDKE-----RGL-VELDDEALDALAR 184 (413)
T ss_pred ---------------------hhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhh-----cCC-CCCCHHHHHHHHH
Confidence 02456788998 8999999999999999887665431 133 5789999999999
Q ss_pred CCCCChHHHHHHHHHH
Q 001788 944 GVWLGRTGLEDWTEKV 959 (1013)
Q Consensus 944 ~~~~gar~l~~~ie~~ 959 (1013)
.+-...|.+.+.++..
T Consensus 185 ~s~Gd~R~aln~Le~~ 200 (413)
T PRK13342 185 LANGDARRALNLLELA 200 (413)
T ss_pred hCCCCHHHHHHHHHHH
Confidence 8733347777887765
No 73
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=5.1e-12 Score=145.54 Aligned_cols=192 Identities=14% Similarity=0.147 Sum_probs=126.4
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCC----cee-eeCCCCCC
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASP----IMI-PLGPRRDH 705 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~----~~i-~id~s~~~ 705 (1013)
+.|+||+++++.+..++...+.. .+ ++|+||+|+|||++|+.+|+.++.... +.- ...|.+..
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~-------h~-----~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~ 83 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIH-------HA-----WLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIE 83 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCC-------eE-----EEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 56899999999988888633211 11 899999999999999999999974311 100 00000000
Q ss_pred CCCc-------c-cccccchhhhHHHHHHcCC----CEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEE
Q 001788 706 EEPE-------V-RVRGKTALDKIGEAVKRNP----FSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIF 773 (1013)
Q Consensus 706 ~~~~-------~-g~~G~~~~~~L~eal~~~p----~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~ii 773 (1013)
.+.. + ...+.+....+.+.+...| +.|+||||+|+++...++.|++.+++.. .+++|
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~-----------~~~~f 152 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPP-----------QHIKF 152 (363)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCC-----------CCeEE
Confidence 0000 0 0122223334445444333 5699999999999999999999998621 24567
Q ss_pred EEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCC
Q 001788 774 ILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGD 853 (1013)
Q Consensus 774 I~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~ 853 (1013)
|++|+-. .
T Consensus 153 Il~t~~~----~-------------------------------------------------------------------- 160 (363)
T PRK14961 153 ILATTDV----E-------------------------------------------------------------------- 160 (363)
T ss_pred EEEcCCh----H--------------------------------------------------------------------
Confidence 8877410 0
Q ss_pred CCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhhcCCcceec
Q 001788 854 DKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGDALSIEI 933 (1013)
Q Consensus 854 ~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~i 933 (1013)
.+.+.+.+|. ..+.|.|++.+++.+++...+.+. .+.+
T Consensus 161 --------------------------------~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~---------g~~i 198 (363)
T PRK14961 161 --------------------------------KIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKE---------SIDT 198 (363)
T ss_pred --------------------------------hhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHc---------CCCC
Confidence 2344678888 789999999999998877655421 3568
Q ss_pred CHHHHHHHHhCCCCChHHHHHHHHHH
Q 001788 934 LDEALEKLVGGVWLGRTGLEDWTEKV 959 (1013)
Q Consensus 934 d~~a~~~L~~~~~~gar~l~~~ie~~ 959 (1013)
+++++++|+..+-...|...+.+++.
T Consensus 199 ~~~al~~ia~~s~G~~R~al~~l~~~ 224 (363)
T PRK14961 199 DEYALKLIAYHAHGSMRDALNLLEHA 224 (363)
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999987654457666666654
No 74
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=3.8e-12 Score=152.69 Aligned_cols=190 Identities=12% Similarity=0.149 Sum_probs=127.0
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCC------
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRD------ 704 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~------ 704 (1013)
+.|+||+.++..|.+++...+.. .+ +||+||+|+|||++|+.||+.++..... ....|..+
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~-------ha-----~Lf~GPpG~GKTtiArilAk~L~C~~~~-~~~pCg~C~sC~~i 82 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVA-------PA-----YLFSGTRGVGKTTIARIFAKALNCETAP-TGEPCNTCEQCRKV 82 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCC-------ce-----EEEECCCCCCHHHHHHHHHHhccccCCC-CCCCCcccHHHHHH
Confidence 45899999999988888643211 12 9999999999999999999999753110 00001110
Q ss_pred CCCCcc--------cccccchhhhHHHHHHc----CCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceE
Q 001788 705 HEEPEV--------RVRGKTALDKIGEAVKR----NPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVI 772 (1013)
Q Consensus 705 ~~~~~~--------g~~G~~~~~~L~eal~~----~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~i 772 (1013)
..+..+ ...+.+....|.+.+.. ..+.||||||+|+++...++.|+++||+-. .+++
T Consensus 83 ~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~-----------~~~i 151 (624)
T PRK14959 83 TQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPP-----------ARVT 151 (624)
T ss_pred hcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccC-----------CCEE
Confidence 001000 01233333445444443 346899999999999999999999998621 3466
Q ss_pred EEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccC
Q 001788 773 FILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVG 852 (1013)
Q Consensus 773 iI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~ 852 (1013)
||++||.-.
T Consensus 152 fILaTt~~~----------------------------------------------------------------------- 160 (624)
T PRK14959 152 FVLATTEPH----------------------------------------------------------------------- 160 (624)
T ss_pred EEEecCChh-----------------------------------------------------------------------
Confidence 888885200
Q ss_pred CCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhhcCCccee
Q 001788 853 DDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGDALSIE 932 (1013)
Q Consensus 853 ~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~ 932 (1013)
.+.+-|.+|+ .+|.|+|++.+++.+++...+.+ ..+.
T Consensus 161 ---------------------------------kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~---------egi~ 197 (624)
T PRK14959 161 ---------------------------------KFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGR---------EGVD 197 (624)
T ss_pred ---------------------------------hhhHHHHhhh-hccccCCCCHHHHHHHHHHHHHH---------cCCC
Confidence 2344577888 68899999999999888764431 1356
Q ss_pred cCHHHHHHHHhCCCCChHHHHHHHHH
Q 001788 933 ILDEALEKLVGGVWLGRTGLEDWTEK 958 (1013)
Q Consensus 933 id~~a~~~L~~~~~~gar~l~~~ie~ 958 (1013)
|++++++.|+..+-...|..-+.+++
T Consensus 198 id~eal~lIA~~s~GdlR~Al~lLeq 223 (624)
T PRK14959 198 YDPAAVRLIARRAAGSVRDSMSLLGQ 223 (624)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 89999999999775555755555554
No 75
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.40 E-value=8.5e-12 Score=141.85 Aligned_cols=194 Identities=14% Similarity=0.135 Sum_probs=129.2
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcc
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEV 710 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~ 710 (1013)
+.++||++.+..+...+...+... .+... ++|+||+|+|||++|+.+|+.+. ..+...+.....
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~---~~~~~-----~ll~GppG~GKT~la~~ia~~l~---~~~~~~~~~~~~----- 88 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRG---EALDH-----VLLYGPPGLGKTTLANIIANEMG---VNIRITSGPALE----- 88 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcC---CCCCc-----EEEECCCCccHHHHHHHHHHHhC---CCeEEEeccccc-----
Confidence 457999999999888886554321 11222 99999999999999999999985 233333322110
Q ss_pred cccccchhhhHHHHHHc-CCCEEEEEeCCCCCCHHHHHHHHHHHHcceEec--CCC---e--EeecCceEEEEecCCCCc
Q 001788 711 RVRGKTALDKIGEAVKR-NPFSVILLEDIDEADMVVRGNIKRAMERGRLVD--SYG---R--EISLGNVIFILTADWLPD 782 (1013)
Q Consensus 711 g~~G~~~~~~L~eal~~-~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d--~~g---~--~vd~~n~iiI~TSN~g~~ 782 (1013)
..+.+...+.. ..+.|||||||++++...++.|+.+|++..+.. ..+ + .......++|++||..
T Consensus 89 ------~~~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~-- 160 (328)
T PRK00080 89 ------KPGDLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRA-- 160 (328)
T ss_pred ------ChHHHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCc--
Confidence 01122222222 346899999999999999999999998765431 111 0 1112233445554310
Q ss_pred chhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCC
Q 001788 783 SLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSS 862 (1013)
Q Consensus 783 ~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~s 862 (1013)
T Consensus 161 -------------------------------------------------------------------------------- 160 (328)
T PRK00080 161 -------------------------------------------------------------------------------- 160 (328)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHHH
Q 001788 863 DLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLV 942 (1013)
Q Consensus 863 d~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~ 942 (1013)
..+.+.|.+|+..++.|.|++.+++.+|+...+.. ..+.++++++++|+
T Consensus 161 ----------------------~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~---------~~~~~~~~~~~~ia 209 (328)
T PRK00080 161 ----------------------GLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARI---------LGVEIDEEGALEIA 209 (328)
T ss_pred ----------------------ccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH---------cCCCcCHHHHHHHH
Confidence 03456788999889999999999999999865542 24678999999999
Q ss_pred hCCCCChHHHHHHHHHH
Q 001788 943 GGVWLGRTGLEDWTEKV 959 (1013)
Q Consensus 943 ~~~~~gar~l~~~ie~~ 959 (1013)
..+-...|.+.++++++
T Consensus 210 ~~~~G~pR~a~~~l~~~ 226 (328)
T PRK00080 210 RRSRGTPRIANRLLRRV 226 (328)
T ss_pred HHcCCCchHHHHHHHHH
Confidence 98754446666666543
No 76
>PLN03025 replication factor C subunit; Provisional
Probab=99.40 E-value=5.2e-12 Score=143.07 Aligned_cols=181 Identities=14% Similarity=0.162 Sum_probs=124.8
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCC--CceeeeCCCCCCCCC
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGAS--PIMIPLGPRRDHEEP 708 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~--~~~i~id~s~~~~~~ 708 (1013)
+.++||++++..+...+... + .+ +++|+||+|+|||++|+++|+.+++.. ..++.++.++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~--~~-----~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd----- 74 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------N--MP-----NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASD----- 74 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------C--Cc-----eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccc-----
Confidence 34789999988877655321 1 11 289999999999999999999997653 3355555553
Q ss_pred cccccccchhhhHHHHHH-------cCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCC
Q 001788 709 EVRVRGKTALDKIGEAVK-------RNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLP 781 (1013)
Q Consensus 709 ~~g~~G~~~~~~L~eal~-------~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~ 781 (1013)
..|.+....+..... ...+.||+|||+|+++...|+.|++.|+.- . .++.||++||...
T Consensus 75 ---~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~--~---------~~t~~il~~n~~~ 140 (319)
T PLN03025 75 ---DRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIY--S---------NTTRFALACNTSS 140 (319)
T ss_pred ---cccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcc--c---------CCceEEEEeCCcc
Confidence 223322222221111 124679999999999999999999999841 1 2345888887210
Q ss_pred cchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCCCCCCCCCC
Q 001788 782 DSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNS 861 (1013)
Q Consensus 782 ~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~ 861 (1013)
T Consensus 141 -------------------------------------------------------------------------------- 140 (319)
T PLN03025 141 -------------------------------------------------------------------------------- 140 (319)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHH
Q 001788 862 SDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGDALSIEILDEALEKL 941 (1013)
Q Consensus 862 sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L 941 (1013)
.+.+.+.+|+ .+|.|+|++.+++.+++...+.+ -.+.++++++++|
T Consensus 141 ------------------------~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~---------egi~i~~~~l~~i 186 (319)
T PLN03025 141 ------------------------KIIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEA---------EKVPYVPEGLEAI 186 (319)
T ss_pred ------------------------ccchhHHHhh-hcccCCCCCHHHHHHHHHHHHHH---------cCCCCCHHHHHHH
Confidence 2345788888 78999999999998887654432 1457889999999
Q ss_pred HhCCCCChHHHHHHHH
Q 001788 942 VGGVWLGRTGLEDWTE 957 (1013)
Q Consensus 942 ~~~~~~gar~l~~~ie 957 (1013)
+..+-..-|.+-+.++
T Consensus 187 ~~~~~gDlR~aln~Lq 202 (319)
T PLN03025 187 IFTADGDMRQALNNLQ 202 (319)
T ss_pred HHHcCCCHHHHHHHHH
Confidence 9876544476666666
No 77
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=2.3e-12 Score=141.70 Aligned_cols=127 Identities=21% Similarity=0.302 Sum_probs=93.8
Q ss_pred cccccHHHHHHHHHHHHHh--------hhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCC
Q 001788 632 KVWWQQEAASAVATTVTQC--------KLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRR 703 (1013)
Q Consensus 632 ~ViGQ~~ai~~I~~ai~~~--------~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~ 703 (1013)
.|-|-++.+++|..++.-. ..|+.|+++ +|++||||||||.|||++|.... ..||++..|+
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKG--------VLLYGPPGTGKTLLAkAVA~~T~---AtFIrvvgSE 220 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKG--------VLLYGPPGTGKTLLAKAVANQTD---ATFIRVVGSE 220 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCc--------eEeeCCCCCcHHHHHHHHHhccC---ceEEEeccHH
Confidence 4677777777787777532 335555443 99999999999999999999654 8999999997
Q ss_pred CCCCCcccccccch--hhhHHHHHHcCCCEEEEEeCCCC-----------CCHHHHHHHHHHHHcceEecCCCeEeecCc
Q 001788 704 DHEEPEVRVRGKTA--LDKIGEAVKRNPFSVILLEDIDE-----------ADMVVRGNIKRAMERGRLVDSYGREISLGN 770 (1013)
Q Consensus 704 ~~~~~~~g~~G~~~--~~~L~eal~~~p~~VV~lDEIdk-----------a~~~vq~~LL~~le~G~l~d~~g~~vd~~n 770 (1013)
+... |+|... ...+++..+.+..+||||||||- .+.+||..++++|.+=.=.|. ..|
T Consensus 221 lVqK----YiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~------~~n 290 (406)
T COG1222 221 LVQK----YIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP------RGN 290 (406)
T ss_pred HHHH----HhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC------CCC
Confidence 6554 676542 34567777777779999999994 467899999999964111122 245
Q ss_pred eEEEEecCC
Q 001788 771 VIFILTADW 779 (1013)
Q Consensus 771 ~iiI~TSN~ 779 (1013)
+-||++||.
T Consensus 291 vKVI~ATNR 299 (406)
T COG1222 291 VKVIMATNR 299 (406)
T ss_pred eEEEEecCC
Confidence 669999984
No 78
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=3.8e-11 Score=142.01 Aligned_cols=66 Identities=18% Similarity=0.167 Sum_probs=57.8
Q ss_pred cCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-cc-cchhhhHHHHHHHHHHHHhhcCCCCceEEEecchhHH
Q 001788 204 GGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-FT-CDKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKWL 279 (1013)
Q Consensus 204 vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~~-~~rge~e~r~~~l~~~~~~~~~~~~~~il~idel~~l 279 (1013)
-|.| ||+.+|+.+|+. -|.+++.+|.. +. -.+.-.|.+++.+...++.+ .+.|||+=.+..|
T Consensus 437 hG~~g~GK~t~V~~vas~----------lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~----~pavifl~~~dvl 502 (953)
T KOG0736|consen 437 HGPPGSGKTTVVRAVASE----------LGLHLLEVDCYELVAESASHTETKLQAIFSRARRC----SPAVLFLRNLDVL 502 (953)
T ss_pred eCCCCCChHHHHHHHHHH----------hCCceEeccHHHHhhcccchhHHHHHHHHHHHhhc----CceEEEEecccee
Confidence 7888 999999999987 68999999987 64 48899999999999999985 8999999999988
Q ss_pred Hhcc
Q 001788 280 VEQQ 283 (1013)
Q Consensus 280 ~~~~ 283 (1013)
..+.
T Consensus 503 ~id~ 506 (953)
T KOG0736|consen 503 GIDQ 506 (953)
T ss_pred eecC
Confidence 7443
No 79
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.37 E-value=1.1e-11 Score=149.62 Aligned_cols=184 Identities=21% Similarity=0.278 Sum_probs=131.2
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCC----------------
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASP---------------- 694 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~---------------- 694 (1013)
+.|+||++++..+.+++...+.+ ..+||+||+|+|||++|+.+|+.+.....
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~------------hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKIS------------HAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCC------------eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHh
Confidence 56899999999999988753321 12899999999999999999999974321
Q ss_pred -----ceeeeCCCCCCCCCcccccccchhhhHHHHHHcC----CCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeE
Q 001788 695 -----IMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKRN----PFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGRE 765 (1013)
Q Consensus 695 -----~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~~----p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~ 765 (1013)
.++.+|.+ ...|.+....+.+.+... ++.|++|||+|++....++.|++.+++-.
T Consensus 84 ~g~~~dv~eidaa--------s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp-------- 147 (559)
T PRK05563 84 NGSLMDVIEIDAA--------SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPP-------- 147 (559)
T ss_pred cCCCCCeEEeecc--------ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCC--------
Confidence 12222221 123333445566665544 36799999999999999999999998631
Q ss_pred eecCceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccch
Q 001788 766 ISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDL 845 (1013)
Q Consensus 766 vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldL 845 (1013)
.+++||++|+--
T Consensus 148 ---~~~ifIlatt~~----------------------------------------------------------------- 159 (559)
T PRK05563 148 ---AHVIFILATTEP----------------------------------------------------------------- 159 (559)
T ss_pred ---CCeEEEEEeCCh-----------------------------------------------------------------
Confidence 356788887410
Q ss_pred hhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhh
Q 001788 846 NKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSII 925 (1013)
Q Consensus 846 n~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~ 925 (1013)
..+.+.+.+|. ..+.|+|++.+++..++...+.+
T Consensus 160 ---------------------------------------~ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~------ 193 (559)
T PRK05563 160 ---------------------------------------HKIPATILSRC-QRFDFKRISVEDIVERLKYILDK------ 193 (559)
T ss_pred ---------------------------------------hhCcHHHHhHh-eEEecCCCCHHHHHHHHHHHHHH------
Confidence 02445688888 67899999999998887665542
Q ss_pred cCCcceecCHHHHHHHHhCCCCChHHHHHHHHHH
Q 001788 926 GDALSIEILDEALEKLVGGVWLGRTGLEDWTEKV 959 (1013)
Q Consensus 926 ~~~~~L~id~~a~~~L~~~~~~gar~l~~~ie~~ 959 (1013)
-.+.+++++++.|+..+-.+.|...+++++.
T Consensus 194 ---egi~i~~~al~~ia~~s~G~~R~al~~Ldq~ 224 (559)
T PRK05563 194 ---EGIEYEDEALRLIARAAEGGMRDALSILDQA 224 (559)
T ss_pred ---cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1457889999999987655557666666654
No 80
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=9.2e-12 Score=151.00 Aligned_cols=192 Identities=15% Similarity=0.169 Sum_probs=130.0
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCc----ee-eeCCCCCC
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPI----MI-PLGPRRDH 705 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~----~i-~id~s~~~ 705 (1013)
+.|+||++++..+..++...+.. ..+||+||+|+|||++|+.+|+.++..... +- .-.|-++.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~------------hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVA------------HAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCC------------eEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHh
Confidence 56899999999999888643221 128999999999999999999999753211 00 00000000
Q ss_pred CCCcc--------cccccchhhhHHHHHHcCC----CEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEE
Q 001788 706 EEPEV--------RVRGKTALDKIGEAVKRNP----FSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIF 773 (1013)
Q Consensus 706 ~~~~~--------g~~G~~~~~~L~eal~~~p----~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~ii 773 (1013)
.+..+ +..|.+....+.+.+...| +.|++|||+|+++...+|.|+++||+- -.+++|
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEep-----------p~~~~f 152 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEP-----------PPHVKF 152 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcC-----------CCCeEE
Confidence 01111 1233334455666655444 579999999999999999999999962 135678
Q ss_pred EEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCC
Q 001788 774 ILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGD 853 (1013)
Q Consensus 774 I~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~ 853 (1013)
|++||--
T Consensus 153 Il~t~~~------------------------------------------------------------------------- 159 (576)
T PRK14965 153 IFATTEP------------------------------------------------------------------------- 159 (576)
T ss_pred EEEeCCh-------------------------------------------------------------------------
Confidence 8888510
Q ss_pred CCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhhcCCcceec
Q 001788 854 DKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGDALSIEI 933 (1013)
Q Consensus 854 ~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~i 933 (1013)
..+.+.+.+|. ..|.|+|++.+++...+...+.+ -.+.+
T Consensus 160 -------------------------------~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~---------egi~i 198 (576)
T PRK14965 160 -------------------------------HKVPITILSRC-QRFDFRRIPLQKIVDRLRYIADQ---------EGISI 198 (576)
T ss_pred -------------------------------hhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHH---------hCCCC
Confidence 02344678888 79999999999988777655442 14578
Q ss_pred CHHHHHHHHhCCCCChHHHHHHHHHH
Q 001788 934 LDEALEKLVGGVWLGRTGLEDWTEKV 959 (1013)
Q Consensus 934 d~~a~~~L~~~~~~gar~l~~~ie~~ 959 (1013)
+++++++|+..+-.+-|...+.+++.
T Consensus 199 ~~~al~~la~~a~G~lr~al~~Ldql 224 (576)
T PRK14965 199 SDAALALVARKGDGSMRDSLSTLDQV 224 (576)
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999988765556665555544
No 81
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.36 E-value=1.2e-11 Score=152.32 Aligned_cols=187 Identities=16% Similarity=0.189 Sum_probs=126.6
Q ss_pred ccccccHHHHHH---HHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCC
Q 001788 631 EKVWWQQEAASA---VATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEE 707 (1013)
Q Consensus 631 ~~ViGQ~~ai~~---I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~ 707 (1013)
+.++||++.+.. +...+.. + ..++ ++|+||||||||++|++||+.+. ..|+.+++...
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~---~-----~~~s-----lLL~GPpGtGKTTLA~aIA~~~~---~~f~~lna~~~--- 88 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA---D-----RVGS-----LILYGPPGVGKTTLARIIANHTR---AHFSSLNAVLA--- 88 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc---C-----CCce-----EEEECCCCCCHHHHHHHHHHHhc---Ccceeehhhhh---
Confidence 347899998853 3333321 1 1123 99999999999999999999874 56677776521
Q ss_pred CcccccccchhhhHHH----HHHc-CCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCc
Q 001788 708 PEVRVRGKTALDKIGE----AVKR-NPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPD 782 (1013)
Q Consensus 708 ~~~g~~G~~~~~~L~e----al~~-~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~ 782 (1013)
+........+ .+.. ....||||||||.++...|+.|++.+++|.+. +|.+|+--
T Consensus 89 ------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~Ii-------------LI~aTTen-- 147 (725)
T PRK13341 89 ------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGTIT-------------LIGATTEN-- 147 (725)
T ss_pred ------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCceEE-------------EEEecCCC--
Confidence 1111111111 1111 24579999999999999999999999876532 56555310
Q ss_pred chhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCC
Q 001788 783 SLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSS 862 (1013)
Q Consensus 783 ~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~s 862 (1013)
.++
T Consensus 148 ----------------------------------------------------------p~~------------------- 150 (725)
T PRK13341 148 ----------------------------------------------------------PYF------------------- 150 (725)
T ss_pred ----------------------------------------------------------hHh-------------------
Confidence 000
Q ss_pred CcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHHH
Q 001788 863 DLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLV 942 (1013)
Q Consensus 863 d~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~ 942 (1013)
.+.+.+++|. .+|.|.|++.+++..++...+......+. ...+.++++++++|+
T Consensus 151 -----------------------~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g--~~~v~I~deaL~~La 204 (725)
T PRK13341 151 -----------------------EVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERGYG--DRKVDLEPEAEKHLV 204 (725)
T ss_pred -----------------------hhhhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhhcC--CcccCCCHHHHHHHH
Confidence 1234677776 68999999999999999987765433221 234789999999999
Q ss_pred hCCCCChHHHHHHHHHHH
Q 001788 943 GGVWLGRTGLEDWTEKVL 960 (1013)
Q Consensus 943 ~~~~~gar~l~~~ie~~l 960 (1013)
..+-...|.+.+.++..+
T Consensus 205 ~~s~GD~R~lln~Le~a~ 222 (725)
T PRK13341 205 DVANGDARSLLNALELAV 222 (725)
T ss_pred HhCCCCHHHHHHHHHHHH
Confidence 988444588888888755
No 82
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.35 E-value=1.6e-11 Score=145.63 Aligned_cols=193 Identities=11% Similarity=0.121 Sum_probs=129.4
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCC----c-e----eeeCC
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASP----I-M----IPLGP 701 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~----~-~----i~id~ 701 (1013)
..++||++++..+..++...+.. .+ +||+||+|||||++|+.+|+.+..... + + ..-.|
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~-------~a-----~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C 88 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLA-------GG-----YLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNC 88 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCC-------ce-----EEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHH
Confidence 45799999999988887643321 12 999999999999999999999974311 0 0 00001
Q ss_pred CCCCCCCcc--------cccccchhhhHHHHHHcC----CCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecC
Q 001788 702 RRDHEEPEV--------RVRGKTALDKIGEAVKRN----PFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLG 769 (1013)
Q Consensus 702 s~~~~~~~~--------g~~G~~~~~~L~eal~~~----p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~ 769 (1013)
-.+..+..+ ...|.+....+.+..... .+.||+|||++.++...++.|++.|++. -.
T Consensus 89 ~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEep-----------p~ 157 (507)
T PRK06645 89 ISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEP-----------PP 157 (507)
T ss_pred HHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhc-----------CC
Confidence 111111111 112333334455554433 4679999999999999999999999852 13
Q ss_pred ceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhh
Q 001788 770 NVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAA 849 (1013)
Q Consensus 770 n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~ 849 (1013)
+++||++|+-- .
T Consensus 158 ~~vfI~aTte~----~---------------------------------------------------------------- 169 (507)
T PRK06645 158 HIIFIFATTEV----Q---------------------------------------------------------------- 169 (507)
T ss_pred CEEEEEEeCCh----H----------------------------------------------------------------
Confidence 56688877410 0
Q ss_pred ccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhhcCCc
Q 001788 850 DVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGDAL 929 (1013)
Q Consensus 850 ~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~ 929 (1013)
...+.+..|+ .++.|+|++.+++.+++...+.+ -
T Consensus 170 ------------------------------------kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~---------e 203 (507)
T PRK06645 170 ------------------------------------KIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQ---------E 203 (507)
T ss_pred ------------------------------------HhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHH---------c
Confidence 1234577788 78999999999999888776642 1
Q ss_pred ceecCHHHHHHHHhCCCCChHHHHHHHHHHH
Q 001788 930 SIEILDEALEKLVGGVWLGRTGLEDWTEKVL 960 (1013)
Q Consensus 930 ~L~id~~a~~~L~~~~~~gar~l~~~ie~~l 960 (1013)
.+.++++++++|+..+-.+.|.+-+.+++.+
T Consensus 204 gi~ie~eAL~~Ia~~s~GslR~al~~Ldkai 234 (507)
T PRK06645 204 NLKTDIEALRIIAYKSEGSARDAVSILDQAA 234 (507)
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3578999999999987666676666666553
No 83
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=2e-11 Score=146.48 Aligned_cols=191 Identities=15% Similarity=0.146 Sum_probs=127.6
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCC------
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRD------ 704 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~------ 704 (1013)
+.|+||+++++.+..++...+.. ..+||+||+|+|||++|+.+|+.++..... ..-.|..+
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~------------ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~-~~~pcg~C~~C~~i 82 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLH------------HAYLFTGTRGVGKTTLARILAKSLNCETGV-TATPCGVCSACLEI 82 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCC------------EEEEEECCCCCCHHHHHHHHHHHhcCCCCC-CCCCCCCCHHHHHH
Confidence 45899999999998888643321 118999999999999999999999753210 00011110
Q ss_pred CCCCcc--------cccccchhhhHHHHHHcC----CCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceE
Q 001788 705 HEEPEV--------RVRGKTALDKIGEAVKRN----PFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVI 772 (1013)
Q Consensus 705 ~~~~~~--------g~~G~~~~~~L~eal~~~----p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~i 772 (1013)
..+..+ ...+.+....+.+.+... ++.|+||||+|+++...+|.||+.||+-. .+++
T Consensus 83 ~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp-----------~~~~ 151 (527)
T PRK14969 83 DSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPP-----------EHVK 151 (527)
T ss_pred hcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCC-----------CCEE
Confidence 000001 122333333454544443 35799999999999999999999998621 3456
Q ss_pred EEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccC
Q 001788 773 FILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVG 852 (1013)
Q Consensus 773 iI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~ 852 (1013)
||++|+-- +
T Consensus 152 fIL~t~d~--------------------------------------~--------------------------------- 160 (527)
T PRK14969 152 FILATTDP--------------------------------------Q--------------------------------- 160 (527)
T ss_pred EEEEeCCh--------------------------------------h---------------------------------
Confidence 88877410 0
Q ss_pred CCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhhcCCccee
Q 001788 853 DDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGDALSIE 932 (1013)
Q Consensus 853 ~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~ 932 (1013)
.+.+-+++|+ ..|.|+|++.+++.+.+...+.+ . .+.
T Consensus 161 ---------------------------------kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~-------e--gi~ 197 (527)
T PRK14969 161 ---------------------------------KIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQ-------E--NIP 197 (527)
T ss_pred ---------------------------------hCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHH-------c--CCC
Confidence 2333588888 89999999999998877665542 1 256
Q ss_pred cCHHHHHHHHhCCCCChHHHHHHHHHH
Q 001788 933 ILDEALEKLVGGVWLGRTGLEDWTEKV 959 (1013)
Q Consensus 933 id~~a~~~L~~~~~~gar~l~~~ie~~ 959 (1013)
++++++++|+..+-..-|...+.+++.
T Consensus 198 ~~~~al~~la~~s~Gslr~al~lldqa 224 (527)
T PRK14969 198 FDATALQLLARAAAGSMRDALSLLDQA 224 (527)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 899999999987654456666666543
No 84
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=2.4e-11 Score=144.65 Aligned_cols=185 Identities=18% Similarity=0.210 Sum_probs=126.7
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCC----------------
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASP---------------- 694 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~---------------- 694 (1013)
+.|+||++++..+..++...+.+ ..+||+||+|+|||++|+++|+.+.....
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~------------ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~ 81 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLG------------HAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRR 81 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCC------------eEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhc
Confidence 45899999999998888643221 12799999999999999999999964211
Q ss_pred ----ceeeeCCCCCCCCCcccccccchhhhHHHHHHc----CCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEe
Q 001788 695 ----IMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKR----NPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREI 766 (1013)
Q Consensus 695 ----~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~----~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~v 766 (1013)
.++.++.+ +..+.+....+.+.+.. ..+.||||||++.+....++.|++.|++..
T Consensus 82 ~~h~dv~el~~~--------~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~--------- 144 (504)
T PRK14963 82 GAHPDVLEIDAA--------SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPP--------- 144 (504)
T ss_pred CCCCceEEeccc--------ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCC---------
Confidence 11112211 11222233344444443 345799999999999999999999998621
Q ss_pred ecCceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchh
Q 001788 767 SLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLN 846 (1013)
Q Consensus 767 d~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn 846 (1013)
.+++||+++|.-.
T Consensus 145 --~~t~~Il~t~~~~----------------------------------------------------------------- 157 (504)
T PRK14963 145 --EHVIFILATTEPE----------------------------------------------------------------- 157 (504)
T ss_pred --CCEEEEEEcCChh-----------------------------------------------------------------
Confidence 3456888775200
Q ss_pred hhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhhc
Q 001788 847 KAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIG 926 (1013)
Q Consensus 847 ~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~ 926 (1013)
.+.+.+.+|. ..|.|.|++.+++...+...+.+
T Consensus 158 ---------------------------------------kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~------- 190 (504)
T PRK14963 158 ---------------------------------------KMPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEA------- 190 (504)
T ss_pred ---------------------------------------hCChHHhcce-EEEEecCCCHHHHHHHHHHHHHH-------
Confidence 2334566776 68999999999999888765542
Q ss_pred CCcceecCHHHHHHHHhCCCCChHHHHHHHHHHH
Q 001788 927 DALSIEILDEALEKLVGGVWLGRTGLEDWTEKVL 960 (1013)
Q Consensus 927 ~~~~L~id~~a~~~L~~~~~~gar~l~~~ie~~l 960 (1013)
. .+.++++++++|+..+-..-|.+.+.+++.+
T Consensus 191 e--gi~i~~~Al~~ia~~s~GdlR~aln~Lekl~ 222 (504)
T PRK14963 191 E--GREAEPEALQLVARLADGAMRDAESLLERLL 222 (504)
T ss_pred c--CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1 3567999999999876544576666666543
No 85
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.33 E-value=3.1e-11 Score=147.33 Aligned_cols=116 Identities=17% Similarity=0.206 Sum_probs=76.5
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcC-------CCCceeeeCCCC
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSG-------ASPIMIPLGPRR 703 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~-------~~~~~i~id~s~ 703 (1013)
..++||+.++..+...+.. . . + .+ ++|+||+|||||++|+.+++.... ...+|+.+|+..
T Consensus 154 ~~iiGqs~~~~~l~~~ia~---~-~---~-~~-----vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~ 220 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVAS---P-F---P-QH-----IILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTT 220 (615)
T ss_pred HhceeCcHHHHHHHHHHhc---C-C---C-Ce-----EEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechh
Confidence 3578999999987655421 1 1 1 12 999999999999999999987732 246789999875
Q ss_pred CCCCC---cccccccchhh----------------hHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEe
Q 001788 704 DHEEP---EVRVRGKTALD----------------KIGEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLV 759 (1013)
Q Consensus 704 ~~~~~---~~g~~G~~~~~----------------~L~eal~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~ 759 (1013)
+.... .....|..... .....+....++||||||++.+++..|..|+++|+++++.
T Consensus 221 l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~ 295 (615)
T TIGR02903 221 LRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVE 295 (615)
T ss_pred ccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEE
Confidence 42110 00111211000 0001122334579999999999999999999999998754
No 86
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=2.6e-11 Score=141.30 Aligned_cols=191 Identities=13% Similarity=0.195 Sum_probs=125.2
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCc----ee---eeCCCC
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPI----MI---PLGPRR 703 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~----~i---~id~s~ 703 (1013)
++|+||+.+++.+..++...+.. .+ +||+||+|+|||++|+.+|+.++..... +. .-.|..
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~-------ha-----~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~ 83 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVG-------HG-----YIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGE 83 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcc-------ee-----EEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCC
Confidence 46899999999888877643321 12 9999999999999999999999763100 00 000110
Q ss_pred C------CCCCccc--------ccccchhhhHHHHHHcC----CCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeE
Q 001788 704 D------HEEPEVR--------VRGKTALDKIGEAVKRN----PFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGRE 765 (1013)
Q Consensus 704 ~------~~~~~~g--------~~G~~~~~~L~eal~~~----p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~ 765 (1013)
+ ..+..+. ..+.+....+.+.+... ++.||||||+|+++...++.|++.+++..
T Consensus 84 c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~-------- 155 (397)
T PRK14955 84 CESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPP-------- 155 (397)
T ss_pred CHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCC--------
Confidence 0 0011111 12223333445555443 45799999999999999999999998521
Q ss_pred eecCceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccch
Q 001788 766 ISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDL 845 (1013)
Q Consensus 766 vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldL 845 (1013)
..++||++++-. .
T Consensus 156 ---~~t~~Il~t~~~----~------------------------------------------------------------ 168 (397)
T PRK14955 156 ---PHAIFIFATTEL----H------------------------------------------------------------ 168 (397)
T ss_pred ---CCeEEEEEeCCh----H------------------------------------------------------------
Confidence 245577776410 0
Q ss_pred hhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhh
Q 001788 846 NKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSII 925 (1013)
Q Consensus 846 n~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~ 925 (1013)
...+.+..|. .+|.|.|++.+++.+++...+.+
T Consensus 169 ----------------------------------------kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~------ 201 (397)
T PRK14955 169 ----------------------------------------KIPATIASRC-QRFNFKRIPLEEIQQQLQGICEA------ 201 (397)
T ss_pred ----------------------------------------HhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHH------
Confidence 1234567777 68999999999999888765542
Q ss_pred cCCcceecCHHHHHHHHhCCCCChHHHHHHHHH
Q 001788 926 GDALSIEILDEALEKLVGGVWLGRTGLEDWTEK 958 (1013)
Q Consensus 926 ~~~~~L~id~~a~~~L~~~~~~gar~l~~~ie~ 958 (1013)
-.+.++++++++|+..+-..-|.+.+.+++
T Consensus 202 ---~g~~i~~~al~~l~~~s~g~lr~a~~~L~k 231 (397)
T PRK14955 202 ---EGISVDADALQLIGRKAQGSMRDAQSILDQ 231 (397)
T ss_pred ---cCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 146789999999998765444655555554
No 87
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=4e-11 Score=142.53 Aligned_cols=193 Identities=15% Similarity=0.175 Sum_probs=128.0
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCce-----eeeCCCCCC
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIM-----IPLGPRRDH 705 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~-----i~id~s~~~ 705 (1013)
+.|+||++++..+..++...+.. ..+||+||+|+|||++|+.+|+.+.+....- ..-.|....
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~------------hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~ 81 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLA------------HAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSAL 81 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCC------------eeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHh
Confidence 45899999999998888533211 1289999999999999999999997532110 000000000
Q ss_pred CCCcc--------cccccchhhhHHHHHHc----CCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEE
Q 001788 706 EEPEV--------RVRGKTALDKIGEAVKR----NPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIF 773 (1013)
Q Consensus 706 ~~~~~--------g~~G~~~~~~L~eal~~----~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~ii 773 (1013)
.+..+ ...|.+....+.+.... .++.|++|||+|+++.+.++.||+.||+- -.+++|
T Consensus 82 ~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEp-----------p~~t~F 150 (535)
T PRK08451 82 ENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEP-----------PSYVKF 150 (535)
T ss_pred hcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhc-----------CCceEE
Confidence 00000 01222223333333332 34679999999999999999999999962 134668
Q ss_pred EEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCC
Q 001788 774 ILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGD 853 (1013)
Q Consensus 774 I~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~ 853 (1013)
|++|+--
T Consensus 151 IL~ttd~------------------------------------------------------------------------- 157 (535)
T PRK08451 151 ILATTDP------------------------------------------------------------------------- 157 (535)
T ss_pred EEEECCh-------------------------------------------------------------------------
Confidence 8887410
Q ss_pred CCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhhcCCcceec
Q 001788 854 DKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGDALSIEI 933 (1013)
Q Consensus 854 ~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~i 933 (1013)
....+.+.+|. ..|.|.|++.+++...+...+.+ . .+.+
T Consensus 158 -------------------------------~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~-------E--Gi~i 196 (535)
T PRK08451 158 -------------------------------LKLPATILSRT-QHFRFKQIPQNSIISHLKTILEK-------E--GVSY 196 (535)
T ss_pred -------------------------------hhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHH-------c--CCCC
Confidence 02345688887 79999999999998887655442 1 3578
Q ss_pred CHHHHHHHHhCCCCChHHHHHHHHHHH
Q 001788 934 LDEALEKLVGGVWLGRTGLEDWTEKVL 960 (1013)
Q Consensus 934 d~~a~~~L~~~~~~gar~l~~~ie~~l 960 (1013)
+++++++|+..+-..-|.+.+++++.+
T Consensus 197 ~~~Al~~Ia~~s~GdlR~alnlLdqai 223 (535)
T PRK08451 197 EPEALEILARSGNGSLRDTLTLLDQAI 223 (535)
T ss_pred CHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 999999999987655577767766544
No 88
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.32 E-value=5.3e-11 Score=127.52 Aligned_cols=107 Identities=16% Similarity=0.252 Sum_probs=77.6
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcc
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEV 710 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~ 710 (1013)
+.++||+++.+.+.-.|..++... ..+-. +||+||||.|||+||..||+.|.- .+- +.. ++
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~---e~lDH-----vLl~GPPGlGKTTLA~IIA~Emgv---n~k-~ts-----Gp-- 86 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRG---EALDH-----VLLFGPPGLGKTTLAHIIANELGV---NLK-ITS-----GP-- 86 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcC---CCcCe-----EEeeCCCCCcHHHHHHHHHHHhcC---CeE-ecc-----cc--
Confidence 457999999999999888766532 22222 999999999999999999999961 111 111 10
Q ss_pred cccccchhhhHHHHHHc-CCCEEEEEeCCCCCCHHHHHHHHHHHHcceEe
Q 001788 711 RVRGKTALDKIGEAVKR-NPFSVILLEDIDEADMVVRGNIKRAMERGRLV 759 (1013)
Q Consensus 711 g~~G~~~~~~L~eal~~-~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~ 759 (1013)
-. +..+.|...+.. .+++|+|||||+++++.+-..|+.+||+=++.
T Consensus 87 ~l---eK~gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lD 133 (332)
T COG2255 87 AL---EKPGDLAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLD 133 (332)
T ss_pred cc---cChhhHHHHHhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEE
Confidence 00 123445554433 67899999999999999999999999976654
No 89
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=3e-11 Score=142.54 Aligned_cols=193 Identities=14% Similarity=0.176 Sum_probs=128.9
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCC-----ce-eeeCCCCC
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASP-----IM-IPLGPRRD 704 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~-----~~-i~id~s~~ 704 (1013)
++|+||+.++..+..++...+.. .+ +||+||+|+|||++|+.+|+.++.... +. ...+|..+
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~-------ha-----~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i 84 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAA-------HA-----YLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEI 84 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCc-------eE-----EEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHH
Confidence 46899999999888888643221 12 899999999999999999999975421 00 00001000
Q ss_pred CCCCc--------ccccccchhhhHHHHHHc----CCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceE
Q 001788 705 HEEPE--------VRVRGKTALDKIGEAVKR----NPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVI 772 (1013)
Q Consensus 705 ~~~~~--------~g~~G~~~~~~L~eal~~----~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~i 772 (1013)
..+.. ....|.+....+.+.+.. .++.||+|||+|++....++.|+++|++-. .+++
T Consensus 85 ~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~-----------~~~~ 153 (451)
T PRK06305 85 SSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPP-----------QHVK 153 (451)
T ss_pred hcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCC-----------CCce
Confidence 00100 012333333344444432 457899999999999999999999998621 2456
Q ss_pred EEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccC
Q 001788 773 FILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVG 852 (1013)
Q Consensus 773 iI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~ 852 (1013)
||++||-- .
T Consensus 154 ~Il~t~~~----~------------------------------------------------------------------- 162 (451)
T PRK06305 154 FFLATTEI----H------------------------------------------------------------------- 162 (451)
T ss_pred EEEEeCCh----H-------------------------------------------------------------------
Confidence 88877510 0
Q ss_pred CCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhhcCCccee
Q 001788 853 DDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGDALSIE 932 (1013)
Q Consensus 853 ~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~ 932 (1013)
...+.+.+|. ..|.|+|++.+++.+++...+.+ ..+.
T Consensus 163 ---------------------------------kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~---------eg~~ 199 (451)
T PRK06305 163 ---------------------------------KIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQ---------EGIE 199 (451)
T ss_pred ---------------------------------hcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHH---------cCCC
Confidence 2234677888 68999999999999887655442 1456
Q ss_pred cCHHHHHHHHhCCCCChHHHHHHHHHHH
Q 001788 933 ILDEALEKLVGGVWLGRTGLEDWTEKVL 960 (1013)
Q Consensus 933 id~~a~~~L~~~~~~gar~l~~~ie~~l 960 (1013)
++++++++|+..+-..-|.+.+.+++..
T Consensus 200 i~~~al~~L~~~s~gdlr~a~~~Lekl~ 227 (451)
T PRK06305 200 TSREALLPIARAAQGSLRDAESLYDYVV 227 (451)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 8999999999887544576767776543
No 90
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=2.8e-11 Score=147.16 Aligned_cols=192 Identities=15% Similarity=0.196 Sum_probs=130.8
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCC---CCC
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRD---HEE 707 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~---~~~ 707 (1013)
+.|+||+.++..+..++...+.. .+ +||+||+|+|||++|+.+|+.++........-.|..+ ...
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~-------HA-----YLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~ 85 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKIS-------HA-----YLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNN 85 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCC-------eE-----EEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcC
Confidence 46899999999999888643221 11 8999999999999999999999754211000001000 000
Q ss_pred C-------cccccccchhhhHHHHHHcC----CCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEe
Q 001788 708 P-------EVRVRGKTALDKIGEAVKRN----PFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILT 776 (1013)
Q Consensus 708 ~-------~~g~~G~~~~~~L~eal~~~----p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~T 776 (1013)
. ..+..|.+....+.+.+... ++.|++|||+|.+....++.||+.||+-. .+++||++
T Consensus 86 ~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP-----------~~tifILa 154 (725)
T PRK07133 86 SLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPP-----------KHVIFILA 154 (725)
T ss_pred CCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCC-----------CceEEEEE
Confidence 0 01123344445666666654 45799999999999999999999999631 34568887
Q ss_pred cCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCCCCC
Q 001788 777 ADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKD 856 (1013)
Q Consensus 777 SN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~ 856 (1013)
|+--
T Consensus 155 Tte~---------------------------------------------------------------------------- 158 (725)
T PRK07133 155 TTEV---------------------------------------------------------------------------- 158 (725)
T ss_pred cCCh----------------------------------------------------------------------------
Confidence 7410
Q ss_pred CCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhhcCCcceecCHH
Q 001788 857 GSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGDALSIEILDE 936 (1013)
Q Consensus 857 ~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~ 936 (1013)
..+.+.+..|+ .+|.|.|++.+++.+++...+.+ ..+.++++
T Consensus 159 ----------------------------~KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~k---------egI~id~e 200 (725)
T PRK07133 159 ----------------------------HKIPLTILSRV-QRFNFRRISEDEIVSRLEFILEK---------ENISYEKN 200 (725)
T ss_pred ----------------------------hhhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHHH---------cCCCCCHH
Confidence 02345688998 69999999999999888765432 13678899
Q ss_pred HHHHHHhCCCCChHHHHHHHHHH
Q 001788 937 ALEKLVGGVWLGRTGLEDWTEKV 959 (1013)
Q Consensus 937 a~~~L~~~~~~gar~l~~~ie~~ 959 (1013)
++++|+..+-.+.|.+.+.+++.
T Consensus 201 Al~~LA~lS~GslR~AlslLekl 223 (725)
T PRK07133 201 ALKLIAKLSSGSLRDALSIAEQV 223 (725)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999987765557555555543
No 91
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=3.1e-11 Score=144.30 Aligned_cols=191 Identities=14% Similarity=0.201 Sum_probs=129.4
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCcee--eeCCCCC---C
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMI--PLGPRRD---H 705 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i--~id~s~~---~ 705 (1013)
+.|+||+.++..+..++...+.. .+ +||+||+|+|||++|+.+|+.+......-. .-.|..+ .
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~-------hA-----~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLT-------HA-----YIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCC-------ce-----EEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHH
Confidence 45899999999988887533221 12 999999999999999999999975321100 0001000 0
Q ss_pred CCCcc--------cccccchhhhHHHHHHcCC----CEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEE
Q 001788 706 EEPEV--------RVRGKTALDKIGEAVKRNP----FSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIF 773 (1013)
Q Consensus 706 ~~~~~--------g~~G~~~~~~L~eal~~~p----~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~ii 773 (1013)
.+..+ +..|.+....+.+.+...| +.|++|||+|.++...++.|++.|++.. .+++|
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp-----------~~tvf 152 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPP-----------KHVVF 152 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCC-----------CcEEE
Confidence 00001 1223333444555544443 5799999999999999999999999632 35678
Q ss_pred EEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCC
Q 001788 774 ILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGD 853 (1013)
Q Consensus 774 I~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~ 853 (1013)
|++|+..
T Consensus 153 IL~Tt~~------------------------------------------------------------------------- 159 (605)
T PRK05896 153 IFATTEF------------------------------------------------------------------------- 159 (605)
T ss_pred EEECCCh-------------------------------------------------------------------------
Confidence 8887410
Q ss_pred CCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhhcCCcceec
Q 001788 854 DKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGDALSIEI 933 (1013)
Q Consensus 854 ~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~i 933 (1013)
..+.+.+..|. .++.|.|++.+++..++...+.+ ..+.+
T Consensus 160 -------------------------------~KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~k---------egi~I 198 (605)
T PRK05896 160 -------------------------------QKIPLTIISRC-QRYNFKKLNNSELQELLKSIAKK---------EKIKI 198 (605)
T ss_pred -------------------------------HhhhHHHHhhh-hhcccCCCCHHHHHHHHHHHHHH---------cCCCC
Confidence 02345688888 68999999999999888765542 13568
Q ss_pred CHHHHHHHHhCCCCChHHHHHHHHH
Q 001788 934 LDEALEKLVGGVWLGRTGLEDWTEK 958 (1013)
Q Consensus 934 d~~a~~~L~~~~~~gar~l~~~ie~ 958 (1013)
+++++++|+..+....|.+.+.+++
T Consensus 199 s~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 199 EDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred CHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 8999999998876555766666665
No 92
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=4.2e-11 Score=144.94 Aligned_cols=192 Identities=14% Similarity=0.196 Sum_probs=130.7
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCc---eeeeCCCC----
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPI---MIPLGPRR---- 703 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~---~i~id~s~---- 703 (1013)
+.|+||+.+++.+.+++...+.. .+ +||+||+|+|||++|+.||+.++..... -..+++..
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~-------ha-----~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~ 91 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIA-------QA-----FMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEH 91 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCC-------ce-----EEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHH
Confidence 46899999999999988643321 12 9999999999999999999999743210 00011100
Q ss_pred ---CCCCCcc--------cccccchhhhHHHHHHcCC----CEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeec
Q 001788 704 ---DHEEPEV--------RVRGKTALDKIGEAVKRNP----FSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISL 768 (1013)
Q Consensus 704 ---~~~~~~~--------g~~G~~~~~~L~eal~~~p----~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~ 768 (1013)
+..+..+ ...|.+....+.+.+...| +.||||||+|.++...+|.|++.||+- -
T Consensus 92 C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEeP-----------p 160 (598)
T PRK09111 92 CQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEP-----------P 160 (598)
T ss_pred HHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhC-----------C
Confidence 0111111 2234444445666665444 679999999999999999999999862 1
Q ss_pred CceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhh
Q 001788 769 GNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKA 848 (1013)
Q Consensus 769 ~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~ 848 (1013)
.+++|||+|+--.
T Consensus 161 ~~~~fIl~tte~~------------------------------------------------------------------- 173 (598)
T PRK09111 161 PHVKFIFATTEIR------------------------------------------------------------------- 173 (598)
T ss_pred CCeEEEEEeCChh-------------------------------------------------------------------
Confidence 3466888874100
Q ss_pred hccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhhcCC
Q 001788 849 ADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGDA 928 (1013)
Q Consensus 849 ~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~ 928 (1013)
...+-+.+|+ .+|.|++++.+++..++...+.+
T Consensus 174 -------------------------------------kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~k--------- 206 (598)
T PRK09111 174 -------------------------------------KVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAK--------- 206 (598)
T ss_pred -------------------------------------hhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHH---------
Confidence 1233477887 78999999999999888765542
Q ss_pred cceecCHHHHHHHHhCCCCChHHHHHHHHHH
Q 001788 929 LSIEILDEALEKLVGGVWLGRTGLEDWTEKV 959 (1013)
Q Consensus 929 ~~L~id~~a~~~L~~~~~~gar~l~~~ie~~ 959 (1013)
-.+.++++++++|+..+-..-|.+.+++++.
T Consensus 207 egi~i~~eAl~lIa~~a~Gdlr~al~~Ldkl 237 (598)
T PRK09111 207 EGVEVEDEALALIARAAEGSVRDGLSLLDQA 237 (598)
T ss_pred cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1467889999999988765557666666654
No 93
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=4.7e-11 Score=144.73 Aligned_cols=192 Identities=13% Similarity=0.191 Sum_probs=127.3
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCC---c-eee---eCCCC
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASP---I-MIP---LGPRR 703 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~---~-~i~---id~s~ 703 (1013)
+.|+||+.++..+.+++...+.. .+ +||+||+|||||++|+.+|+.++.... + +.. -.|..
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~-------ha-----~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~ 83 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVG-------HG-----YIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGE 83 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCC-------ee-----EEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCcc
Confidence 56899999999988877533321 12 999999999999999999999975310 0 000 01111
Q ss_pred C------CCCCccc--------ccccchhhhHHHHHHc----CCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeE
Q 001788 704 D------HEEPEVR--------VRGKTALDKIGEAVKR----NPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGRE 765 (1013)
Q Consensus 704 ~------~~~~~~g--------~~G~~~~~~L~eal~~----~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~ 765 (1013)
+ ..+..+. ..+.+....+.+.+.. .++.||+|||+|+++...++.|+++|++-.
T Consensus 84 C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp-------- 155 (620)
T PRK14954 84 CESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPP-------- 155 (620)
T ss_pred CHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCC--------
Confidence 0 1111111 1222333444555543 346799999999999999999999999621
Q ss_pred eecCceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccch
Q 001788 766 ISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDL 845 (1013)
Q Consensus 766 vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldL 845 (1013)
..++||++|+-. .
T Consensus 156 ---~~tv~IL~t~~~----~------------------------------------------------------------ 168 (620)
T PRK14954 156 ---PHAIFIFATTEL----H------------------------------------------------------------ 168 (620)
T ss_pred ---CCeEEEEEeCCh----h------------------------------------------------------------
Confidence 245678877410 0
Q ss_pred hhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhh
Q 001788 846 NKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSII 925 (1013)
Q Consensus 846 n~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~ 925 (1013)
.+.+.+..|. .+|.|+|++.+++..++...+.+
T Consensus 169 ----------------------------------------kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~------ 201 (620)
T PRK14954 169 ----------------------------------------KIPATIASRC-QRFNFKRIPLDEIQSQLQMICRA------ 201 (620)
T ss_pred ----------------------------------------hhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHH------
Confidence 2334677777 89999999999999887655442
Q ss_pred cCCcceecCHHHHHHHHhCCCCChHHHHHHHHHH
Q 001788 926 GDALSIEILDEALEKLVGGVWLGRTGLEDWTEKV 959 (1013)
Q Consensus 926 ~~~~~L~id~~a~~~L~~~~~~gar~l~~~ie~~ 959 (1013)
-.+.++++++++|+..+-..-|.+.+.+++.
T Consensus 202 ---egi~I~~eal~~La~~s~Gdlr~al~eLeKL 232 (620)
T PRK14954 202 ---EGIQIDADALQLIARKAQGSMRDAQSILDQV 232 (620)
T ss_pred ---cCCCCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 1356899999999988654456666666543
No 94
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.29 E-value=4.7e-11 Score=141.29 Aligned_cols=93 Identities=17% Similarity=0.212 Sum_probs=67.0
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccccccch--hhhHHHHHHcCCCEEEEEeCCCCCCH--
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGKTA--LDKIGEAVKRNPFSVILLEDIDEADM-- 743 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G~~~--~~~L~eal~~~p~~VV~lDEIdka~~-- 743 (1013)
+||+||||||||.+|++||..+. .+|+.++++.... +|+|..+ ...++...+....+||||||||++..
T Consensus 262 ILL~GPpGTGKTllAkaiA~e~~---~~~~~l~~~~l~~----~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~ 334 (489)
T CHL00195 262 LLLVGIQGTGKSLTAKAIANDWQ---LPLLRLDVGKLFG----GIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNS 334 (489)
T ss_pred EEEECCCCCcHHHHHHHHHHHhC---CCEEEEEhHHhcc----cccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccc
Confidence 99999999999999999999886 7899999875433 3666543 23344444555569999999998643
Q ss_pred ----------HHHHHHHHHHHcceEecCCCeEeecCceEEEEecC
Q 001788 744 ----------VVRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778 (1013)
Q Consensus 744 ----------~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN 778 (1013)
.+.+.|+..|++. -.+.+||+|||
T Consensus 335 ~~~~d~~~~~rvl~~lL~~l~~~-----------~~~V~vIaTTN 368 (489)
T CHL00195 335 ESKGDSGTTNRVLATFITWLSEK-----------KSPVFVVATAN 368 (489)
T ss_pred cCCCCchHHHHHHHHHHHHHhcC-----------CCceEEEEecC
Confidence 2445566666531 13567889987
No 95
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=6.5e-11 Score=142.67 Aligned_cols=191 Identities=13% Similarity=0.172 Sum_probs=126.5
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCC------
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRD------ 704 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~------ 704 (1013)
+.|+||++++..+..++...+.. .+ +||+||+|+|||++|+.||+.+.....+-. .-|..+
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~-------ha-----yLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~-~pC~~C~~C~~i 82 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIA-------NA-----YIFSGPRGVGKTSSARAFARCLNCVNGPTP-MPCGECSSCKSI 82 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCC-------eE-----EEEECCCCCCHHHHHHHHHHhhccccCCCC-CCCccchHHHHH
Confidence 46899999999999888643321 12 999999999999999999999975321100 000000
Q ss_pred CCCCcccc--------cccchhhhHHHHHHc----CCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceE
Q 001788 705 HEEPEVRV--------RGKTALDKIGEAVKR----NPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVI 772 (1013)
Q Consensus 705 ~~~~~~g~--------~G~~~~~~L~eal~~----~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~i 772 (1013)
..+..+.+ .+.+....+.+.+.. .++.|++|||+++++...++.|++.+++.. .+++
T Consensus 83 ~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp-----------~~~v 151 (563)
T PRK06647 83 DNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPP-----------PYIV 151 (563)
T ss_pred HcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCC-----------CCEE
Confidence 00111111 111122233333232 456799999999999999999999998521 3567
Q ss_pred EEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccC
Q 001788 773 FILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVG 852 (1013)
Q Consensus 773 iI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~ 852 (1013)
||++|+-- .
T Consensus 152 fI~~tte~----~------------------------------------------------------------------- 160 (563)
T PRK06647 152 FIFATTEV----H------------------------------------------------------------------- 160 (563)
T ss_pred EEEecCCh----H-------------------------------------------------------------------
Confidence 88887410 0
Q ss_pred CCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhhcCCccee
Q 001788 853 DDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGDALSIE 932 (1013)
Q Consensus 853 ~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~ 932 (1013)
.+.+.+.+|+ ..+.|+|++.+++.+++...+.+ -.+.
T Consensus 161 ---------------------------------kL~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~~---------egi~ 197 (563)
T PRK06647 161 ---------------------------------KLPATIKSRC-QHFNFRLLSLEKIYNMLKKVCLE---------DQIK 197 (563)
T ss_pred ---------------------------------HhHHHHHHhc-eEEEecCCCHHHHHHHHHHHHHH---------cCCC
Confidence 2345688888 67999999999998777654432 1356
Q ss_pred cCHHHHHHHHhCCCCChHHHHHHHHHH
Q 001788 933 ILDEALEKLVGGVWLGRTGLEDWTEKV 959 (1013)
Q Consensus 933 id~~a~~~L~~~~~~gar~l~~~ie~~ 959 (1013)
++++++++|+..+-...|.+.+.+++.
T Consensus 198 id~eAl~lLa~~s~GdlR~alslLdkl 224 (563)
T PRK06647 198 YEDEALKWIAYKSTGSVRDAYTLFDQV 224 (563)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 899999999987655557777777654
No 96
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=7.7e-11 Score=139.96 Aligned_cols=192 Identities=16% Similarity=0.201 Sum_probs=128.8
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCC----cee-eeCCCCCC
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASP----IMI-PLGPRRDH 705 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~----~~i-~id~s~~~ 705 (1013)
..++||++++..+..++...+.. . .+||+||+|+|||++|+.+|+.++.... ++- +.+|..+.
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~-------h-----ayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~ 83 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVS-------H-----AYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEID 83 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCC-------e-----EEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHh
Confidence 45899999999998888643221 1 2899999999999999999999974211 110 01111111
Q ss_pred CCCccc--------ccccchhhhHHHHHHcCC----CEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEE
Q 001788 706 EEPEVR--------VRGKTALDKIGEAVKRNP----FSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIF 773 (1013)
Q Consensus 706 ~~~~~g--------~~G~~~~~~L~eal~~~p----~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~ii 773 (1013)
.+..+. ..|.+....+.+.+...| +.|++|||+|+++...++.|++.+++.. .+++|
T Consensus 84 ~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp-----------~~~v~ 152 (486)
T PRK14953 84 KGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPP-----------PRTIF 152 (486)
T ss_pred cCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCC-----------CCeEE
Confidence 111111 133333445666665544 5699999999999999999999998631 24567
Q ss_pred EEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCC
Q 001788 774 ILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGD 853 (1013)
Q Consensus 774 I~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~ 853 (1013)
|++|+-. .
T Consensus 153 Il~tt~~----~-------------------------------------------------------------------- 160 (486)
T PRK14953 153 ILCTTEY----D-------------------------------------------------------------------- 160 (486)
T ss_pred EEEECCH----H--------------------------------------------------------------------
Confidence 7776410 0
Q ss_pred CCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhhcCCcceec
Q 001788 854 DKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGDALSIEI 933 (1013)
Q Consensus 854 ~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~i 933 (1013)
.+.+.+..|+ ..|.|+|++.+++..++...+.+ ..+.+
T Consensus 161 --------------------------------kl~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k~---------egi~i 198 (486)
T PRK14953 161 --------------------------------KIPPTILSRC-QRFIFSKPTKEQIKEYLKRICNE---------EKIEY 198 (486)
T ss_pred --------------------------------HHHHHHHHhc-eEEEcCCCCHHHHHHHHHHHHHH---------cCCCC
Confidence 1233567777 58999999999999887765442 13578
Q ss_pred CHHHHHHHHhCCCCChHHHHHHHHHH
Q 001788 934 LDEALEKLVGGVWLGRTGLEDWTEKV 959 (1013)
Q Consensus 934 d~~a~~~L~~~~~~gar~l~~~ie~~ 959 (1013)
+++++++|+..+-.+.|.+.+++++.
T Consensus 199 d~~al~~La~~s~G~lr~al~~Ldkl 224 (486)
T PRK14953 199 EEKALDLLAQASEGGMRDAASLLDQA 224 (486)
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999987655557777777655
No 97
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.27 E-value=5.7e-11 Score=130.89 Aligned_cols=107 Identities=14% Similarity=0.153 Sum_probs=74.7
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCc--ccccccc-----------------------hhhhHH
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPE--VRVRGKT-----------------------ALDKIG 722 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~--~g~~G~~-----------------------~~~~L~ 722 (1013)
++|.||+|||||++|++||+.+. .+++.+++........ ..+.|+. ..+.|.
T Consensus 24 vLL~G~~GtGKT~lA~~la~~lg---~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 24 VHLRGPAGTGKTTLAMHVARKRD---RPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC---CCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 99999999999999999999774 6788888765322100 0111111 023444
Q ss_pred HHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCC----eEe-ecCceEEEEecCC
Q 001788 723 EAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYG----REI-SLGNVIFILTADW 779 (1013)
Q Consensus 723 eal~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g----~~v-d~~n~iiI~TSN~ 779 (1013)
.+.+. +.+|+||||+++++++|+.|+++|++|.++-.++ ..+ .-.+..+|+|+|.
T Consensus 101 ~A~~~--g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~ 160 (262)
T TIGR02640 101 LAVRE--GFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNP 160 (262)
T ss_pred HHHHc--CCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCC
Confidence 44443 3699999999999999999999999998875442 222 1234559999984
No 98
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=1e-10 Score=142.44 Aligned_cols=184 Identities=17% Similarity=0.222 Sum_probs=129.0
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCC-----------------
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGAS----------------- 693 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~----------------- 693 (1013)
+.|+||+++++.+..++...+.. ..+||+||+|+|||++|+.+|+.+....
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~------------hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~ 84 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLA------------HAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAF 84 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCC------------eeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHH
Confidence 56899999999998888643221 1289999999999999999999986321
Q ss_pred -----CceeeeCCCCCCCCCcccccccchhhhHHHHHHcCC----CEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCe
Q 001788 694 -----PIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKRNP----FSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGR 764 (1013)
Q Consensus 694 -----~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~~p----~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~ 764 (1013)
..++.+|.+ +..+.+....+.+.+...| +.||+|||+|+++...++.|+++||+-.
T Consensus 85 ~~~~~~n~~~ld~~--------~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp------- 149 (614)
T PRK14971 85 NEQRSYNIHELDAA--------SNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP------- 149 (614)
T ss_pred hcCCCCceEEeccc--------ccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCC-------
Confidence 112222211 1122222333444444333 6799999999999999999999999621
Q ss_pred EeecCceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccc
Q 001788 765 EISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFD 844 (1013)
Q Consensus 765 ~vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ld 844 (1013)
.+++||++|+--
T Consensus 150 ----~~tifIL~tt~~---------------------------------------------------------------- 161 (614)
T PRK14971 150 ----SYAIFILATTEK---------------------------------------------------------------- 161 (614)
T ss_pred ----CCeEEEEEeCCc----------------------------------------------------------------
Confidence 356788888510
Q ss_pred hhhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHh
Q 001788 845 LNKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSI 924 (1013)
Q Consensus 845 Ln~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~ 924 (1013)
..+.+.+.+|. .+|.|.|++.+++..++...+.+
T Consensus 162 ----------------------------------------~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~----- 195 (614)
T PRK14971 162 ----------------------------------------HKILPTILSRC-QIFDFNRIQVADIVNHLQYVASK----- 195 (614)
T ss_pred ----------------------------------------hhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHH-----
Confidence 02445688888 78999999999999887655442
Q ss_pred hcCCcceecCHHHHHHHHhCCCCChHHHHHHHHHH
Q 001788 925 IGDALSIEILDEALEKLVGGVWLGRTGLEDWTEKV 959 (1013)
Q Consensus 925 ~~~~~~L~id~~a~~~L~~~~~~gar~l~~~ie~~ 959 (1013)
-.+.++++++++|+..+-.+-|.+.+.+++.
T Consensus 196 ----egi~i~~~al~~La~~s~gdlr~al~~Lekl 226 (614)
T PRK14971 196 ----EGITAEPEALNVIAQKADGGMRDALSIFDQV 226 (614)
T ss_pred ----cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1467899999999998755557666666654
No 99
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.26 E-value=1.3e-10 Score=131.40 Aligned_cols=187 Identities=15% Similarity=0.099 Sum_probs=128.7
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcc
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEV 710 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~ 710 (1013)
+.++||++++..+...+.. +..+ ..++|+||+|+|||++|+++++.+. ..++.++++. +
T Consensus 21 ~~~~~~~~~~~~l~~~~~~---~~~~---------~~lll~G~~G~GKT~la~~l~~~~~---~~~~~i~~~~---~--- 79 (316)
T PHA02544 21 DECILPAADKETFKSIVKK---GRIP---------NMLLHSPSPGTGKTTVAKALCNEVG---AEVLFVNGSD---C--- 79 (316)
T ss_pred HHhcCcHHHHHHHHHHHhc---CCCC---------eEEEeeCcCCCCHHHHHHHHHHHhC---ccceEeccCc---c---
Confidence 4579999999988887752 1111 1277799999999999999999874 4567777664 1
Q ss_pred cccccchhhhHHHHHHc----CCCEEEEEeCCCCC-CHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchh
Q 001788 711 RVRGKTALDKIGEAVKR----NPFSVILLEDIDEA-DMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLK 785 (1013)
Q Consensus 711 g~~G~~~~~~L~eal~~----~p~~VV~lDEIdka-~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~ 785 (1013)
.... ....+.+.... .++.||||||+|++ ..+.++.|..++++.. .++.||+|||...
T Consensus 80 -~~~~-i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~-----------~~~~~Ilt~n~~~---- 142 (316)
T PHA02544 80 -RIDF-VRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYS-----------KNCSFIITANNKN---- 142 (316)
T ss_pred -cHHH-HHHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcC-----------CCceEEEEcCChh----
Confidence 0000 01112222211 34689999999999 7788888888887521 3456899986210
Q ss_pred hcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCCCcc
Q 001788 786 FLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDLT 865 (1013)
Q Consensus 786 ~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd~~ 865 (1013)
T Consensus 143 -------------------------------------------------------------------------------- 142 (316)
T PHA02544 143 -------------------------------------------------------------------------------- 142 (316)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHHHhCC
Q 001788 866 VDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLVGGV 945 (1013)
Q Consensus 866 ~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~~~~ 945 (1013)
.+.+.+.+|+ ..+.|.+++.++...++...+......+... .+.++++++.+|+...
T Consensus 143 --------------------~l~~~l~sR~-~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~--~~~i~~~al~~l~~~~ 199 (316)
T PHA02544 143 --------------------GIIEPLRSRC-RVIDFGVPTKEEQIEMMKQMIVRCKGILEAE--GVEVDMKVLAALVKKN 199 (316)
T ss_pred --------------------hchHHHHhhc-eEEEeCCCCHHHHHHHHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHhc
Confidence 2445788888 5889988998888888877665554433322 4567999999999999
Q ss_pred CCChHHHHHHHHH
Q 001788 946 WLGRTGLEDWTEK 958 (1013)
Q Consensus 946 ~~gar~l~~~ie~ 958 (1013)
|.+.|.+-+.++.
T Consensus 200 ~~d~r~~l~~l~~ 212 (316)
T PHA02544 200 FPDFRRTINELQR 212 (316)
T ss_pred CCCHHHHHHHHHH
Confidence 9888866555553
No 100
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.24 E-value=1.4e-10 Score=133.00 Aligned_cols=191 Identities=17% Similarity=0.231 Sum_probs=124.5
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCC------
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRD------ 704 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~------ 704 (1013)
+.++||+++++.+...+...+.. ..+||+||+|+|||++|+.+++.+......-. -.|..+
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~------------~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~-~~c~~c~~c~~~ 80 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIA------------HAYLFSGPRGTGKTSIARIFAKALNCQNGPDG-EPCNECESCKEI 80 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCC------------eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-CCCCCCHHHHHH
Confidence 46899999999998888532211 12899999999999999999999875421100 001000
Q ss_pred CCCCccc--------ccccchhhhHHHHHHcCC----CEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceE
Q 001788 705 HEEPEVR--------VRGKTALDKIGEAVKRNP----FSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVI 772 (1013)
Q Consensus 705 ~~~~~~g--------~~G~~~~~~L~eal~~~p----~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~i 772 (1013)
..+..+. ..+.+....+.+.+...| +.||+|||+|+++...++.|++.+++.. .+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~-----------~~~~ 149 (355)
T TIGR02397 81 NSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPP-----------EHVV 149 (355)
T ss_pred hcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCc-----------ccee
Confidence 0000010 112222334555544433 5799999999999999999999997521 2466
Q ss_pred EEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccC
Q 001788 773 FILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVG 852 (1013)
Q Consensus 773 iI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~ 852 (1013)
||++||-. .
T Consensus 150 lIl~~~~~----~------------------------------------------------------------------- 158 (355)
T TIGR02397 150 FILATTEP----H------------------------------------------------------------------- 158 (355)
T ss_pred EEEEeCCH----H-------------------------------------------------------------------
Confidence 78877410 0
Q ss_pred CCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhhcCCccee
Q 001788 853 DDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGDALSIE 932 (1013)
Q Consensus 853 ~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~ 932 (1013)
.+.+.+..|. ..+.|.|++.+++.+++...+.+ ..+.
T Consensus 159 ---------------------------------~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~---------~g~~ 195 (355)
T TIGR02397 159 ---------------------------------KIPATILSRC-QRFDFKRIPLEDIVERLKKILDK---------EGIK 195 (355)
T ss_pred ---------------------------------HHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHH---------cCCC
Confidence 1223566676 67899999999999888776542 1356
Q ss_pred cCHHHHHHHHhCCCCChHHHHHHHHHH
Q 001788 933 ILDEALEKLVGGVWLGRTGLEDWTEKV 959 (1013)
Q Consensus 933 id~~a~~~L~~~~~~gar~l~~~ie~~ 959 (1013)
++++++++|+..+-..-|.+.+.+++.
T Consensus 196 i~~~a~~~l~~~~~g~~~~a~~~lekl 222 (355)
T TIGR02397 196 IEDEALELIARAADGSLRDALSLLDQL 222 (355)
T ss_pred CCHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 889999999987644446666666654
No 101
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.8e-09 Score=126.90 Aligned_cols=80 Identities=16% Similarity=0.256 Sum_probs=61.4
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccccccchh--hhHHHHHHcCCCEEEEEeCCCCCCH--
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGKTAL--DKIGEAVKRNPFSVILLEDIDEADM-- 743 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G~~~~--~~L~eal~~~p~~VV~lDEIdka~~-- 743 (1013)
+|++||||||||++|.++|.... ..||.+-..+... .|+|..+. ..+++..+....+|+||||+|.+-|
T Consensus 704 iLLyGppGcGKT~la~a~a~~~~---~~fisvKGPElL~----KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkR 776 (952)
T KOG0735|consen 704 ILLYGPPGCGKTLLASAIASNSN---LRFISVKGPELLS----KYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKR 776 (952)
T ss_pred eEEECCCCCcHHHHHHHHHhhCC---eeEEEecCHHHHH----HHhcccHHHHHHHHHHhhccCCeEEEeccccccCccc
Confidence 99999999999999999999765 7888887655433 37887643 3455555555559999999997654
Q ss_pred ---------HHHHHHHHHHH
Q 001788 744 ---------VVRGNIKRAME 754 (1013)
Q Consensus 744 ---------~vq~~LL~~le 754 (1013)
.|.|.||.-|+
T Consensus 777 GhDsTGVTDRVVNQlLTelD 796 (952)
T KOG0735|consen 777 GHDSTGVTDRVVNQLLTELD 796 (952)
T ss_pred CCCCCCchHHHHHHHHHhhc
Confidence 48888888875
No 102
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=1.7e-10 Score=140.67 Aligned_cols=125 Identities=19% Similarity=0.270 Sum_probs=80.6
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCC-c-eeeeC-CC---CC
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASP-I-MIPLG-PR---RD 704 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~-~-~i~id-~s---~~ 704 (1013)
+.|+||+++++.+..++...+.+ . .+||+||+|+|||++|+.+|+.++.... + ....+ |. ..
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~-------~-----a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i 83 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVA-------H-----AYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAI 83 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCc-------e-----EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHH
Confidence 46899999999988888643321 1 1899999999999999999999864311 0 00000 00 00
Q ss_pred CCCCcc--------cccccchhhhHHHHHHcC----CCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceE
Q 001788 705 HEEPEV--------RVRGKTALDKIGEAVKRN----PFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVI 772 (1013)
Q Consensus 705 ~~~~~~--------g~~G~~~~~~L~eal~~~----p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~i 772 (1013)
..+..+ ...+.+....+.+.+... .+.||||||+|+++.+.++.|+++|++-. .+++
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp-----------~~tv 152 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPP-----------PHAI 152 (585)
T ss_pred hcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCC-----------CCeE
Confidence 001111 122333333444544443 35799999999999999999999998632 2466
Q ss_pred EEEecC
Q 001788 773 FILTAD 778 (1013)
Q Consensus 773 iI~TSN 778 (1013)
||++++
T Consensus 153 ~Il~t~ 158 (585)
T PRK14950 153 FILATT 158 (585)
T ss_pred EEEEeC
Confidence 788774
No 103
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.22 E-value=7e-11 Score=138.90 Aligned_cols=192 Identities=17% Similarity=0.246 Sum_probs=137.6
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCC----ceeeeC-CCCCC
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASP----IMIPLG-PRRDH 705 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~----~~i~id-~s~~~ 705 (1013)
+.|+||++.++.+..++...+..+. +||.||-|||||++||.+|+.+..... |+.... |-...
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~hA------------YlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAHA------------YLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEIN 83 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcchhh------------hhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhh
Confidence 4579999999999999986665322 999999999999999999999975431 111100 11111
Q ss_pred CCCc--------ccccccchhhhHHHHHHcCC----CEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEE
Q 001788 706 EEPE--------VRVRGKTALDKIGEAVKRNP----FSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIF 773 (1013)
Q Consensus 706 ~~~~--------~g~~G~~~~~~L~eal~~~p----~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~ii 773 (1013)
.+.. ....|-+....|.+.+...| +.|.+|||++.+....+|.||+.+|+ ...+++|
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEE-----------PP~hV~F 152 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEE-----------PPSHVKF 152 (515)
T ss_pred cCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhccccc-----------CccCeEE
Confidence 1110 12345555667777776655 67999999999999999999999986 2367789
Q ss_pred EEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCC
Q 001788 774 ILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGD 853 (1013)
Q Consensus 774 I~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~ 853 (1013)
||+|+- .
T Consensus 153 IlATTe--------------------------------------~----------------------------------- 159 (515)
T COG2812 153 ILATTE--------------------------------------P----------------------------------- 159 (515)
T ss_pred EEecCC--------------------------------------c-----------------------------------
Confidence 998841 0
Q ss_pred CCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhhcCCcceec
Q 001788 854 DKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGDALSIEI 933 (1013)
Q Consensus 854 ~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~i 933 (1013)
+..++-+++|+ ..+.|+.++.++|..-+...+.+ -.+.+
T Consensus 160 -------------------------------~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~---------E~I~~ 198 (515)
T COG2812 160 -------------------------------QKIPNTILSRC-QRFDFKRLDLEEIAKHLAAILDK---------EGINI 198 (515)
T ss_pred -------------------------------CcCchhhhhcc-ccccccCCCHHHHHHHHHHHHHh---------cCCcc
Confidence 03566789999 89999999999888766655442 25788
Q ss_pred CHHHHHHHHhCCCCChHHHHHHHHHH
Q 001788 934 LDEALEKLVGGVWLGRTGLEDWTEKV 959 (1013)
Q Consensus 934 d~~a~~~L~~~~~~gar~l~~~ie~~ 959 (1013)
+++++..|+..+-.+.|.-...+.+.
T Consensus 199 e~~aL~~ia~~a~Gs~RDalslLDq~ 224 (515)
T COG2812 199 EEDALSLIARAAEGSLRDALSLLDQA 224 (515)
T ss_pred CHHHHHHHHHHcCCChhhHHHHHHHH
Confidence 99999999998776666544444443
No 104
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.22 E-value=1.4e-10 Score=134.67 Aligned_cols=128 Identities=21% Similarity=0.249 Sum_probs=87.2
Q ss_pred ccccccHHHHHHHHHHHHHhhh--------hcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCC
Q 001788 631 EKVWWQQEAASAVATTVTQCKL--------GNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPR 702 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~--------g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s 702 (1013)
+.|.|.++.++.|...+..... |..+.+ -+||+||||||||++|+++|+.+. .+|+.++++
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~--------gvLL~GppGtGKT~lAkaia~~~~---~~~i~v~~~ 199 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPK--------GVLLYGPPGTGKTLLAKAVAHETN---ATFIRVVGS 199 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCC--------ceEEECCCCCChHHHHHHHHHHhC---CCEEEeehH
Confidence 3578999999998888754321 222211 199999999999999999999875 578888887
Q ss_pred CCCCCCcccccccch--hhhHHHHHHcCCCEEEEEeCCCCC-----------CHHHHHHHHHHHHcceEecCCCeEeecC
Q 001788 703 RDHEEPEVRVRGKTA--LDKIGEAVKRNPFSVILLEDIDEA-----------DMVVRGNIKRAMERGRLVDSYGREISLG 769 (1013)
Q Consensus 703 ~~~~~~~~g~~G~~~--~~~L~eal~~~p~~VV~lDEIdka-----------~~~vq~~LL~~le~G~l~d~~g~~vd~~ 769 (1013)
++... |.|... ...+++..+.+..+||||||||.+ ++.++..|++++..-.-.. ...
T Consensus 200 ~l~~~----~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~------~~~ 269 (389)
T PRK03992 200 ELVQK----FIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD------PRG 269 (389)
T ss_pred HHhHh----hccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC------CCC
Confidence 64322 444322 223444445555689999999987 5678888888875321111 123
Q ss_pred ceEEEEecCC
Q 001788 770 NVIFILTADW 779 (1013)
Q Consensus 770 n~iiI~TSN~ 779 (1013)
+.+||+|||.
T Consensus 270 ~v~VI~aTn~ 279 (389)
T PRK03992 270 NVKIIAATNR 279 (389)
T ss_pred CEEEEEecCC
Confidence 6778999973
No 105
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=2.2e-10 Score=132.59 Aligned_cols=132 Identities=15% Similarity=0.220 Sum_probs=85.1
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCC------
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRD------ 704 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~------ 704 (1013)
+.|+||+++++.+..++...+.+...... +-...+||+||+|+|||++|+.+|+.+...... .-.|...
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~---~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~--~~~Cg~C~~C~~~ 79 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGS---GMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD--EPGCGECRACRTV 79 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCC---CCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC--CCCCCCCHHHHHH
Confidence 56999999999999999866532211100 011239999999999999999999998754311 0111110
Q ss_pred CCCCccc---------ccccchhhhHHHHHHcCC----CEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCce
Q 001788 705 HEEPEVR---------VRGKTALDKIGEAVKRNP----FSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNV 771 (1013)
Q Consensus 705 ~~~~~~g---------~~G~~~~~~L~eal~~~p----~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~ 771 (1013)
..+..|. ..+.+....+.+.+...| +.|+||||+|++++..+|.||+.||+.. .++
T Consensus 80 ~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~-----------~~~ 148 (394)
T PRK07940 80 LAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPP-----------PRT 148 (394)
T ss_pred hcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCC-----------CCC
Confidence 0011111 123333345555555444 5799999999999999999999998632 245
Q ss_pred EEEEecC
Q 001788 772 IFILTAD 778 (1013)
Q Consensus 772 iiI~TSN 778 (1013)
+||++|+
T Consensus 149 ~fIL~a~ 155 (394)
T PRK07940 149 VWLLCAP 155 (394)
T ss_pred eEEEEEC
Confidence 5677664
No 106
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=2.5e-10 Score=139.05 Aligned_cols=191 Identities=15% Similarity=0.206 Sum_probs=125.8
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCcee-eeCCCCC-----
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMI-PLGPRRD----- 704 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i-~id~s~~----- 704 (1013)
..++||++++..+..++...+.. .+ +||+||+|+|||++|+.+|+.++.....-. .-.|..+
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~-------~a-----~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~ 83 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIA-------PA-----YLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRA 83 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCC-------ce-----EEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHH
Confidence 46899999999988888643321 12 999999999999999999999986421000 0011100
Q ss_pred -CCCCcccc--------cccchhhhHHHHHHc----CCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCce
Q 001788 705 -HEEPEVRV--------RGKTALDKIGEAVKR----NPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNV 771 (1013)
Q Consensus 705 -~~~~~~g~--------~G~~~~~~L~eal~~----~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~ 771 (1013)
..+..+.+ .+.+....+.+.+.. .++.||||||+|+++.+.++.||+.||+-. .++
T Consensus 84 i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp-----------~~t 152 (620)
T PRK14948 84 IAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPP-----------PRV 152 (620)
T ss_pred HhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCC-----------cCe
Confidence 00111111 222233344444433 346799999999999999999999999521 346
Q ss_pred EEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhcc
Q 001788 772 IFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADV 851 (1013)
Q Consensus 772 iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e 851 (1013)
+||++|+-.
T Consensus 153 vfIL~t~~~----------------------------------------------------------------------- 161 (620)
T PRK14948 153 VFVLATTDP----------------------------------------------------------------------- 161 (620)
T ss_pred EEEEEeCCh-----------------------------------------------------------------------
Confidence 688887510
Q ss_pred CCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhhcCCcce
Q 001788 852 GDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGDALSI 931 (1013)
Q Consensus 852 ~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L 931 (1013)
..+.+.+.+|+ ..+.|.+++.+++...+..... + ..+
T Consensus 162 ---------------------------------~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~----k-----egi 198 (620)
T PRK14948 162 ---------------------------------QRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAE----K-----ESI 198 (620)
T ss_pred ---------------------------------hhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHH----H-----hCC
Confidence 02345688888 7899999998888776654432 1 135
Q ss_pred ecCHHHHHHHHhCCCCChHHHHHHHHH
Q 001788 932 EILDEALEKLVGGVWLGRTGLEDWTEK 958 (1013)
Q Consensus 932 ~id~~a~~~L~~~~~~gar~l~~~ie~ 958 (1013)
.++++++++|+..+-.+-|...+++++
T Consensus 199 ~is~~al~~La~~s~G~lr~A~~lLek 225 (620)
T PRK14948 199 EIEPEALTLVAQRSQGGLRDAESLLDQ 225 (620)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 688999999988765555766666665
No 107
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=3.2e-10 Score=130.92 Aligned_cols=187 Identities=16% Similarity=0.201 Sum_probs=125.0
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCC-------CceeeeCCCC
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGAS-------PIMIPLGPRR 703 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~-------~~~i~id~s~ 703 (1013)
+.|+||+.+++.+...+...+. + ..++|+||+|+|||++|+.+++.++... ..+..+++..
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~---~---------~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~ 84 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHL---A---------QALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDA 84 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCC---C---------eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEecc
Confidence 4689999999998888863211 1 1299999999999999999999987521 1111111110
Q ss_pred CCCCCcccccccchhhhHHHHHHcC----CCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCC
Q 001788 704 DHEEPEVRVRGKTALDKIGEAVKRN----PFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADW 779 (1013)
Q Consensus 704 ~~~~~~~g~~G~~~~~~L~eal~~~----p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~ 779 (1013)
.+..+.+....+.+.+... ++.||+|||+++++...++.|++.+++. ..+++||++++-
T Consensus 85 ------~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~-----------~~~~~~Il~~~~ 147 (367)
T PRK14970 85 ------ASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEP-----------PAHAIFILATTE 147 (367)
T ss_pred ------ccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCC-----------CCceEEEEEeCC
Confidence 0112222333444443332 3579999999999999999999999751 124668887751
Q ss_pred CCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCCCCCCCC
Q 001788 780 LPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSH 859 (1013)
Q Consensus 780 g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~ 859 (1013)
..
T Consensus 148 ~~------------------------------------------------------------------------------ 149 (367)
T PRK14970 148 KH------------------------------------------------------------------------------ 149 (367)
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred CCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHH
Q 001788 860 NSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGDALSIEILDEALE 939 (1013)
Q Consensus 860 ~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~ 939 (1013)
.+.+.+..|. .+|.|.|++.+++..++...+.+ -.+.+++++++
T Consensus 150 --------------------------kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~---------~g~~i~~~al~ 193 (367)
T PRK14970 150 --------------------------KIIPTILSRC-QIFDFKRITIKDIKEHLAGIAVK---------EGIKFEDDALH 193 (367)
T ss_pred --------------------------cCCHHHHhcc-eeEecCCccHHHHHHHHHHHHHH---------cCCCCCHHHHH
Confidence 2234566676 67899999999999888765532 14578999999
Q ss_pred HHHhCCCCChHHHHHHHHHHH
Q 001788 940 KLVGGVWLGRTGLEDWTEKVL 960 (1013)
Q Consensus 940 ~L~~~~~~gar~l~~~ie~~l 960 (1013)
+|+..+-...|.+.+.+++..
T Consensus 194 ~l~~~~~gdlr~~~~~lekl~ 214 (367)
T PRK14970 194 IIAQKADGALRDALSIFDRVV 214 (367)
T ss_pred HHHHhCCCCHHHHHHHHHHHH
Confidence 999976544576666666543
No 108
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.20 E-value=3.3e-10 Score=128.88 Aligned_cols=124 Identities=19% Similarity=0.294 Sum_probs=81.2
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCC--CceeeeCCCCCCCCC
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGAS--PIMIPLGPRRDHEEP 708 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~--~~~i~id~s~~~~~~ 708 (1013)
+.++||++++..+..++... + .+ +++|+||+|+|||++|+++++.+++.. .+++.++++++....
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~--~~-----~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~ 81 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------N--LP-----HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQG 81 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------C--Cc-----eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcc
Confidence 44789999988888776421 1 11 289999999999999999999997653 467888887653211
Q ss_pred ------cccc---ccc------chhhhHHHHH----H----cCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeE
Q 001788 709 ------EVRV---RGK------TALDKIGEAV----K----RNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGRE 765 (1013)
Q Consensus 709 ------~~g~---~G~------~~~~~L~eal----~----~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~ 765 (1013)
.+.+ .+. ...+.+.+.+ . ..+..||+|||++.++...++.|++++++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~-------- 153 (337)
T PRK12402 82 KKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYS-------- 153 (337)
T ss_pred hhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhcc--------
Confidence 0111 111 0111121111 1 1335799999999999999999999998531
Q ss_pred eecCceEEEEecC
Q 001788 766 ISLGNVIFILTAD 778 (1013)
Q Consensus 766 vd~~n~iiI~TSN 778 (1013)
.++.||++++
T Consensus 154 ---~~~~~Il~~~ 163 (337)
T PRK12402 154 ---RTCRFIIATR 163 (337)
T ss_pred ---CCCeEEEEeC
Confidence 2344777775
No 109
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.19 E-value=5.2e-10 Score=120.41 Aligned_cols=157 Identities=13% Similarity=0.112 Sum_probs=111.6
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccccccchhhhHHHHHHcCCCEEEEEeCCCCCCHHHHH
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKRNPFSVILLEDIDEADMVVRG 747 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~~p~~VV~lDEIdka~~~vq~ 747 (1013)
++|+||+|||||.+|+++++.+......++.+++...... + . ......+|+||||+.++...|.
T Consensus 45 ~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~-------------~-~--~~~~~~~liiDdi~~l~~~~~~ 108 (227)
T PRK08903 45 FYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA-------------F-D--FDPEAELYAVDDVERLDDAQQI 108 (227)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH-------------H-h--hcccCCEEEEeChhhcCchHHH
Confidence 9999999999999999999998766677788887642110 0 0 1123479999999999999999
Q ss_pred HHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhh
Q 001788 748 NIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEE 827 (1013)
Q Consensus 748 ~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~ 827 (1013)
.|+.+++...- . ...++|+|++....
T Consensus 109 ~L~~~~~~~~~---~------~~~~vl~~~~~~~~--------------------------------------------- 134 (227)
T PRK08903 109 ALFNLFNRVRA---H------GQGALLVAGPAAPL--------------------------------------------- 134 (227)
T ss_pred HHHHHHHHHHH---c------CCcEEEEeCCCCHH---------------------------------------------
Confidence 99999864221 1 12346666642100
Q ss_pred hhccccccccCCCcccchhhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhc--cceecCCCC
Q 001788 828 ERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVD--SAIVFKPVD 905 (1013)
Q Consensus 828 ~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid--~iV~F~Pl~ 905 (1013)
. ..+.++|.+|+. ..|.+.|++
T Consensus 135 --------~------------------------------------------------~~l~~~L~sr~~~~~~i~l~pl~ 158 (227)
T PRK08903 135 --------A------------------------------------------------LPLREDLRTRLGWGLVYELKPLS 158 (227)
T ss_pred --------h------------------------------------------------CCCCHHHHHHHhcCeEEEecCCC
Confidence 0 034568888983 688999999
Q ss_pred hhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHHHhCCCCCh-HHHHHHHHHHH
Q 001788 906 FGRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLVGGVWLGR-TGLEDWTEKVL 960 (1013)
Q Consensus 906 ~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~~~~~~ga-r~l~~~ie~~l 960 (1013)
.++...++... ..+ ..+.++++++++|+. .|.|+ |.+.+.++..-
T Consensus 159 ~~~~~~~l~~~----~~~-----~~v~l~~~al~~L~~-~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 159 DADKIAALKAA----AAE-----RGLQLADEVPDYLLT-HFRRDMPSLMALLDALD 204 (227)
T ss_pred HHHHHHHHHHH----HHH-----cCCCCCHHHHHHHHH-hccCCHHHHHHHHHHHH
Confidence 88766655432 222 247899999999999 69888 89999988743
No 110
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.19 E-value=2e-10 Score=123.22 Aligned_cols=161 Identities=13% Similarity=0.132 Sum_probs=112.4
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccccccchhhhHHHHHHcCCCEEEEEeCCCCCCH--HH
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKRNPFSVILLEDIDEADM--VV 745 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~~p~~VV~lDEIdka~~--~v 745 (1013)
++|+||+|||||++|+.+++.+......++.++++.+... ...+.+.+.. ..+|+|||++.++. ..
T Consensus 41 lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~----------~~~~~~~~~~--~~lLvIDdi~~l~~~~~~ 108 (226)
T TIGR03420 41 LYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQA----------DPEVLEGLEQ--ADLVCLDDVEAIAGQPEW 108 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHh----------HHHHHhhccc--CCEEEEeChhhhcCChHH
Confidence 9999999999999999999998765567788887753211 0122222222 36999999999987 44
Q ss_pred HHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchh
Q 001788 746 RGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLD 825 (1013)
Q Consensus 746 q~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~ 825 (1013)
+..|..+++... +. +..+|+||+.....+
T Consensus 109 ~~~L~~~l~~~~--~~--------~~~iIits~~~~~~~----------------------------------------- 137 (226)
T TIGR03420 109 QEALFHLYNRVR--EA--------GGRLLIAGRAAPAQL----------------------------------------- 137 (226)
T ss_pred HHHHHHHHHHHH--Hc--------CCeEEEECCCChHHC-----------------------------------------
Confidence 888888886422 11 113777876311000
Q ss_pred hhhhccccccccCCCcccchhhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhc--cceecCC
Q 001788 826 EEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVD--SAIVFKP 903 (1013)
Q Consensus 826 ~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid--~iV~F~P 903 (1013)
....++|.+|+. ..|.+.|
T Consensus 138 -----------------------------------------------------------~~~~~~L~~r~~~~~~i~l~~ 158 (226)
T TIGR03420 138 -----------------------------------------------------------PLRLPDLRTRLAWGLVFQLPP 158 (226)
T ss_pred -----------------------------------------------------------CcccHHHHHHHhcCeeEecCC
Confidence 012357888874 5889999
Q ss_pred CChhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHHHhCCCCCh-HHHHHHHHHHH
Q 001788 904 VDFGRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLVGGVWLGR-TGLEDWTEKVL 960 (1013)
Q Consensus 904 l~~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~~~~~~ga-r~l~~~ie~~l 960 (1013)
++.+++..++...+.+ ..+.++++++++|+.. |.|+ |.++++|++.-
T Consensus 159 l~~~e~~~~l~~~~~~---------~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~ 206 (226)
T TIGR03420 159 LSDEEKIAALQSRAAR---------RGLQLPDEVADYLLRH-GSRDMGSLMALLDALD 206 (226)
T ss_pred CCHHHHHHHHHHHHHH---------cCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHH
Confidence 9999888887654321 1467999999999994 9888 89999998743
No 111
>PRK04195 replication factor C large subunit; Provisional
Probab=99.17 E-value=4.9e-10 Score=133.92 Aligned_cols=104 Identities=20% Similarity=0.245 Sum_probs=74.1
Q ss_pred cccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCccc
Q 001788 632 KVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVR 711 (1013)
Q Consensus 632 ~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g 711 (1013)
.++||++++..+..++.....|.. .. .+||+||||+|||++|++||+.+. ..++.++++++..
T Consensus 15 dlvg~~~~~~~l~~~l~~~~~g~~----~~-----~lLL~GppG~GKTtla~ala~el~---~~~ielnasd~r~----- 77 (482)
T PRK04195 15 DVVGNEKAKEQLREWIESWLKGKP----KK-----ALLLYGPPGVGKTSLAHALANDYG---WEVIELNASDQRT----- 77 (482)
T ss_pred HhcCCHHHHHHHHHHHHHHhcCCC----CC-----eEEEECCCCCCHHHHHHHHHHHcC---CCEEEEccccccc-----
Confidence 479999999999999876553321 11 299999999999999999999985 5778888875321
Q ss_pred ccccchhhhHHH-HHH-----cCCCEEEEEeCCCCCCH----HHHHHHHHHHHc
Q 001788 712 VRGKTALDKIGE-AVK-----RNPFSVILLEDIDEADM----VVRGNIKRAMER 755 (1013)
Q Consensus 712 ~~G~~~~~~L~e-al~-----~~p~~VV~lDEIdka~~----~vq~~LL~~le~ 755 (1013)
......+.. +.. ..++.||+|||+|.++. ..++.|++++++
T Consensus 78 ---~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~ 128 (482)
T PRK04195 78 ---ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK 128 (482)
T ss_pred ---HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHc
Confidence 111111111 111 12568999999999876 678889999874
No 112
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.16 E-value=8.7e-10 Score=123.59 Aligned_cols=105 Identities=16% Similarity=0.157 Sum_probs=67.6
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccccccchh--hhHHH-HHH----cCCCEEEEEeCCCC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGKTAL--DKIGE-AVK----RNPFSVILLEDIDE 740 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G~~~~--~~L~e-al~----~~p~~VV~lDEIdk 740 (1013)
++|+||||||||.+|+++|+.+. .+|+.++.++.... |+|..+. ..++. |-. +...+||||||||.
T Consensus 151 llL~GPPGcGKTllAraiA~elg---~~~i~vsa~eL~sk----~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA 223 (413)
T PLN00020 151 LGIWGGKGQGKSFQCELVFKKMG---IEPIVMSAGELESE----NAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDA 223 (413)
T ss_pred EEeeCCCCCCHHHHHHHHHHHcC---CCeEEEEHHHhhcC----cCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhh
Confidence 99999999999999999999986 78999998865443 7776432 22333 321 23349999999996
Q ss_pred CCHH-----------H-HHHHHHHHHcceEecCCC---eEeecCceEEEEecCC
Q 001788 741 ADMV-----------V-RGNIKRAMERGRLVDSYG---REISLGNVIFILTADW 779 (1013)
Q Consensus 741 a~~~-----------v-q~~LL~~le~G~l~d~~g---~~vd~~n~iiI~TSN~ 779 (1013)
.-+. + ...|+.++++=...-..| ..-....++||.|||.
T Consensus 224 ~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNr 277 (413)
T PLN00020 224 GAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGND 277 (413)
T ss_pred cCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCC
Confidence 5431 2 246777776411000001 0112356778999973
No 113
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.15 E-value=4.7e-10 Score=130.17 Aligned_cols=127 Identities=17% Similarity=0.217 Sum_probs=82.7
Q ss_pred ccccccHHHHHHHHHHHHHhhh--------hcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCC
Q 001788 631 EKVWWQQEAASAVATTVTQCKL--------GNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPR 702 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~--------g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s 702 (1013)
..|.|.+..+..|..++..... |..+.+ -+||+||||||||++|+++|..+. .+|+.+..+
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pk--------gvLL~GppGTGKT~LAkalA~~l~---~~fi~i~~s 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPR--------GVLLYGPPGTGKTMLAKAVAHHTT---ATFIRVVGS 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCc--------eEEEECCCCCCHHHHHHHHHHhcC---CCEEEEehH
Confidence 3588999999988888763321 222221 199999999999999999999875 678888765
Q ss_pred CCCCCCcccccccch--hhhHHHHHHcCCCEEEEEeCCCCC-----------CHHHHHHHHHHHHcceEecCCCeEeecC
Q 001788 703 RDHEEPEVRVRGKTA--LDKIGEAVKRNPFSVILLEDIDEA-----------DMVVRGNIKRAMERGRLVDSYGREISLG 769 (1013)
Q Consensus 703 ~~~~~~~~g~~G~~~--~~~L~eal~~~p~~VV~lDEIdka-----------~~~vq~~LL~~le~G~l~d~~g~~vd~~ 769 (1013)
.+.. .|.|... ...++...+.+..+||||||||.+ +..++..+.+++..-.-.+ ...
T Consensus 214 ~l~~----k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~------~~~ 283 (398)
T PTZ00454 214 EFVQ----KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD------QTT 283 (398)
T ss_pred HHHH----HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC------CCC
Confidence 4322 2444422 223444445555599999999965 3456677777664311001 123
Q ss_pred ceEEEEecC
Q 001788 770 NVIFILTAD 778 (1013)
Q Consensus 770 n~iiI~TSN 778 (1013)
+++||+|||
T Consensus 284 ~v~VI~aTN 292 (398)
T PTZ00454 284 NVKVIMATN 292 (398)
T ss_pred CEEEEEecC
Confidence 567899997
No 114
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.14 E-value=1.5e-09 Score=122.50 Aligned_cols=181 Identities=23% Similarity=0.308 Sum_probs=121.3
Q ss_pred cccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCC--CceeeeCCCCCCCCCc
Q 001788 632 KVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGAS--PIMIPLGPRRDHEEPE 709 (1013)
Q Consensus 632 ~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~--~~~i~id~s~~~~~~~ 709 (1013)
.++||+++++.+..++.... .+. ++|+||+|+|||++++.+++.+++.. ..++.++.+..
T Consensus 18 ~~~g~~~~~~~l~~~i~~~~--------~~~-----~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~----- 79 (319)
T PRK00440 18 EIVGQEEIVERLKSYVKEKN--------MPH-----LLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDE----- 79 (319)
T ss_pred HhcCcHHHHHHHHHHHhCCC--------CCe-----EEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccc-----
Confidence 37899999999888774211 112 89999999999999999999987653 34555554421
Q ss_pred ccccccch-hhhHHHHHHc-----CCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcc
Q 001788 710 VRVRGKTA-LDKIGEAVKR-----NPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDS 783 (1013)
Q Consensus 710 ~g~~G~~~-~~~L~eal~~-----~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~ 783 (1013)
.+... ...+.+.... .+..||+|||++.++...++.|++++++.. .++++|+++|...
T Consensus 80 ---~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~-----------~~~~lIl~~~~~~-- 143 (319)
T PRK00440 80 ---RGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYS-----------QNTRFILSCNYSS-- 143 (319)
T ss_pred ---cchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCC-----------CCCeEEEEeCCcc--
Confidence 11111 1222222222 335699999999999999999999997522 2345788775210
Q ss_pred hhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCCC
Q 001788 784 LKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSD 863 (1013)
Q Consensus 784 ~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd 863 (1013)
T Consensus 144 -------------------------------------------------------------------------------- 143 (319)
T PRK00440 144 -------------------------------------------------------------------------------- 143 (319)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHHHh
Q 001788 864 LTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLVG 943 (1013)
Q Consensus 864 ~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~~ 943 (1013)
.+.+.+..|. ..+.|.|++.+++..++...+.+. .+.++++++++|+.
T Consensus 144 ----------------------~l~~~l~sr~-~~~~~~~l~~~ei~~~l~~~~~~~---------~~~i~~~al~~l~~ 191 (319)
T PRK00440 144 ----------------------KIIDPIQSRC-AVFRFSPLKKEAVAERLRYIAENE---------GIEITDDALEAIYY 191 (319)
T ss_pred ----------------------ccchhHHHHh-heeeeCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHH
Confidence 1223466676 578999999999988887655421 35689999999998
Q ss_pred CCCCChHHHHHHHHH
Q 001788 944 GVWLGRTGLEDWTEK 958 (1013)
Q Consensus 944 ~~~~gar~l~~~ie~ 958 (1013)
.+....|.+.+.++.
T Consensus 192 ~~~gd~r~~~~~l~~ 206 (319)
T PRK00440 192 VSEGDMRKAINALQA 206 (319)
T ss_pred HcCCCHHHHHHHHHH
Confidence 764444655555553
No 115
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.13 E-value=6.6e-10 Score=126.51 Aligned_cols=135 Identities=21% Similarity=0.229 Sum_probs=95.3
Q ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeee
Q 001788 620 DSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPL 699 (1013)
Q Consensus 620 e~l~~L~~~L~~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~i 699 (1013)
..+..+...+...++|+++++..+..++...+ . +||.||||||||++|+.+|+.+. .+|+++
T Consensus 13 ~~~~~~~~~~~~~~~g~~~~~~~~l~a~~~~~----------~-----vll~G~PG~gKT~la~~lA~~l~---~~~~~i 74 (329)
T COG0714 13 EILGKIRSELEKVVVGDEEVIELALLALLAGG----------H-----VLLEGPPGVGKTLLARALARALG---LPFVRI 74 (329)
T ss_pred hHHHHHHhhcCCeeeccHHHHHHHHHHHHcCC----------C-----EEEECCCCccHHHHHHHHHHHhC---CCeEEE
Confidence 34556677778889999988888777775211 1 99999999999999999999997 789999
Q ss_pred CCCCCCCCCcccccccch--------------hhhHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeE
Q 001788 700 GPRRDHEEPEVRVRGKTA--------------LDKIGEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGRE 765 (1013)
Q Consensus 700 d~s~~~~~~~~g~~G~~~--------------~~~L~eal~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~ 765 (1013)
.|...... ...+|... .+.++.+.+ .|+|+|||.++++.+|+.|+++|++++++...-.+
T Consensus 75 ~~t~~l~p--~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~ 148 (329)
T COG0714 75 QCTPDLLP--SDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILLLDEINRAPPEVQNALLEALEERQVTVPGLTT 148 (329)
T ss_pred ecCCCCCH--HHhcCchhHhhhhccCCeEEEecCCcccccc----eEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCC
Confidence 98754321 11112111 112222221 49999999999999999999999999998644221
Q ss_pred eecCceE-EEEecC
Q 001788 766 ISLGNVI-FILTAD 778 (1013)
Q Consensus 766 vd~~n~i-iI~TSN 778 (1013)
+.+...+ +|+|+|
T Consensus 149 ~~~~~~f~viaT~N 162 (329)
T COG0714 149 IRLPPPFIVIATQN 162 (329)
T ss_pred cCCCCCCEEEEccC
Confidence 5555554 455556
No 116
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.12 E-value=4.6e-10 Score=131.14 Aligned_cols=126 Identities=15% Similarity=0.230 Sum_probs=81.0
Q ss_pred cccccHHHHHHHHHHHHHhhh--------hcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCC
Q 001788 632 KVWWQQEAASAVATTVTQCKL--------GNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRR 703 (1013)
Q Consensus 632 ~ViGQ~~ai~~I~~ai~~~~~--------g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~ 703 (1013)
.|.|.+..+..|..++..... |..+ |. -+||+||||||||++|+++|..+. .+|+.++.++
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~--p~------gVLL~GPPGTGKT~LAraIA~el~---~~fi~V~~se 252 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKP--PK------GVILYGPPGTGKTLLAKAVANETS---ATFLRVVGSE 252 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCC--Cc------EEEEECCCCCCHHHHHHHHHHhhC---CCEEEEecch
Confidence 468999999988888863211 1211 11 289999999999999999999875 5788888775
Q ss_pred CCCCCcccccccch--hhhHHHHHHcCCCEEEEEeCCCCCC-----------HHHHHHHHHHHHcceEecCCCeEeecCc
Q 001788 704 DHEEPEVRVRGKTA--LDKIGEAVKRNPFSVILLEDIDEAD-----------MVVRGNIKRAMERGRLVDSYGREISLGN 770 (1013)
Q Consensus 704 ~~~~~~~g~~G~~~--~~~L~eal~~~p~~VV~lDEIdka~-----------~~vq~~LL~~le~G~l~d~~g~~vd~~n 770 (1013)
+... |.|... ...++...+.+..+||||||||.+. ..++..+++++..= +.. ....+
T Consensus 253 L~~k----~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~L---dg~---~~~~~ 322 (438)
T PTZ00361 253 LIQK----YLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQL---DGF---DSRGD 322 (438)
T ss_pred hhhh----hcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHH---hhh---cccCC
Confidence 4332 555432 2334444444555899999998652 34666666666421 000 01235
Q ss_pred eEEEEecC
Q 001788 771 VIFILTAD 778 (1013)
Q Consensus 771 ~iiI~TSN 778 (1013)
.+||+|||
T Consensus 323 V~VI~ATN 330 (438)
T PTZ00361 323 VKVIMATN 330 (438)
T ss_pred eEEEEecC
Confidence 67899997
No 117
>PRK06893 DNA replication initiation factor; Validated
Probab=99.11 E-value=1.3e-09 Score=117.83 Aligned_cols=164 Identities=16% Similarity=0.137 Sum_probs=109.4
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccccccchhhhHHHHHHcCCCEEEEEeCCCCCC--HH
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKRNPFSVILLEDIDEAD--MV 744 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~~p~~VV~lDEIdka~--~~ 744 (1013)
+++|+||+|+|||.|++++++.+.........+++.... +. ...+.+.++ ...+|+||||+... ..
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~------~~----~~~~~~~~~--~~dlLilDDi~~~~~~~~ 108 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ------YF----SPAVLENLE--QQDLVCLDDLQAVIGNEE 108 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh------hh----hHHHHhhcc--cCCEEEEeChhhhcCChH
Confidence 489999999999999999999876443344444443210 00 012222222 34799999999864 55
Q ss_pred HHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccch
Q 001788 745 VRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWL 824 (1013)
Q Consensus 745 vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~ 824 (1013)
.+..|+.+++... .. ...++|+|+|.....+
T Consensus 109 ~~~~l~~l~n~~~--~~-------~~~illits~~~p~~l---------------------------------------- 139 (229)
T PRK06893 109 WELAIFDLFNRIK--EQ-------GKTLLLISADCSPHAL---------------------------------------- 139 (229)
T ss_pred HHHHHHHHHHHHH--Hc-------CCcEEEEeCCCChHHc----------------------------------------
Confidence 6677888886432 11 2234677776422110
Q ss_pred hhhhhccccccccCCCcccchhhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhc--cceecC
Q 001788 825 DEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVD--SAIVFK 902 (1013)
Q Consensus 825 ~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid--~iV~F~ 902 (1013)
+...|+|.+|+. .++.+.
T Consensus 140 ------------------------------------------------------------~~~~~~L~sRl~~g~~~~l~ 159 (229)
T PRK06893 140 ------------------------------------------------------------SIKLPDLASRLTWGEIYQLN 159 (229)
T ss_pred ------------------------------------------------------------cccchhHHHHHhcCCeeeCC
Confidence 023467888873 488899
Q ss_pred CCChhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHHHhCCCCChHHHHHHHHHHH
Q 001788 903 PVDFGRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLVGGVWLGRTGLEDWTEKVL 960 (1013)
Q Consensus 903 Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~~~~~~gar~l~~~ie~~l 960 (1013)
|++.++..+|+++.... ..+.+++++++||+...-...|.+...+++..
T Consensus 160 ~pd~e~~~~iL~~~a~~---------~~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l~ 208 (229)
T PRK06893 160 DLTDEQKIIVLQRNAYQ---------RGIELSDEVANFLLKRLDRDMHTLFDALDLLD 208 (229)
T ss_pred CCCHHHHHHHHHHHHHH---------cCCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 99999999998765431 14789999999999986656689999998764
No 118
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.11 E-value=3.4e-09 Score=116.65 Aligned_cols=65 Identities=25% Similarity=0.365 Sum_probs=49.2
Q ss_pred hccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCC
Q 001788 630 MEKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRR 703 (1013)
Q Consensus 630 ~~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~ 703 (1013)
...++||.+|=++.--.+...+.|.-..++ +||.||||+|||.+|-.||+.| |...||+.+..++
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~aGrg--------iLi~GppgTGKTAlA~gIa~eL-G~dvPF~~isgsE 102 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKMAGRG--------ILIVGPPGTGKTALAMGIAREL-GEDVPFVAISGSE 102 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcccccE--------EEEECCCCCcHHHHHHHHHHHh-CCCCCceeeccce
Confidence 356899998876655555544554222222 9999999999999999999999 5668999888765
No 119
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.10 E-value=9.7e-10 Score=124.41 Aligned_cols=135 Identities=16% Similarity=0.190 Sum_probs=77.7
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcC------CCCceeeeC----
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSG------ASPIMIPLG---- 700 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~------~~~~~i~id---- 700 (1013)
..|+||++++..+..++... | .+. +||.|++|+|||++|++|+..+.. .+..+.++.
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~--~------~~~-----vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~ 74 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDP--G------IGG-----VLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPE 74 (334)
T ss_pred HHhCCHHHHHHHHHHHHhcc--C------CCc-----EEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcc
Confidence 45899999998877654321 1 112 999999999999999999999842 111111111
Q ss_pred CCCCC-----CC------Ccc-----cccccchh------hh---HHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHc
Q 001788 701 PRRDH-----EE------PEV-----RVRGKTAL------DK---IGEAVKRNPFSVILLEDIDEADMVVRGNIKRAMER 755 (1013)
Q Consensus 701 ~s~~~-----~~------~~~-----g~~G~~~~------~~---L~eal~~~p~~VV~lDEIdka~~~vq~~LL~~le~ 755 (1013)
+.++. .. .+. ..+|.-.. |. -.+.+....++++|+|||+++++.+|..|+++|++
T Consensus 75 ~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee 154 (334)
T PRK13407 75 WAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQS 154 (334)
T ss_pred cccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHc
Confidence 10000 00 011 12221000 00 01112222346899999999999999999999999
Q ss_pred ceEe-cCCCeEeec-CceEEEEecC
Q 001788 756 GRLV-DSYGREISL-GNVIFILTAD 778 (1013)
Q Consensus 756 G~l~-d~~g~~vd~-~n~iiI~TSN 778 (1013)
|.++ ...|....+ ...++|+|+|
T Consensus 155 ~~v~v~r~G~~~~~p~rfiviAt~N 179 (334)
T PRK13407 155 GENVVEREGLSIRHPARFVLVGSGN 179 (334)
T ss_pred CCeEEEECCeEEecCCCEEEEecCC
Confidence 9853 122333322 2345666665
No 120
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.09 E-value=1.7e-09 Score=133.10 Aligned_cols=132 Identities=14% Similarity=0.125 Sum_probs=82.0
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcC-------------------
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSG------------------- 691 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~------------------- 691 (1013)
..|+||++++..+..+....+ ++. +||.|++|+|||++|++|++.+..
T Consensus 4 ~~ivGq~~~~~al~~~av~~~--------~g~-----vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~ 70 (633)
T TIGR02442 4 TAIVGQEDLKLALLLNAVDPR--------IGG-----VLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEW 70 (633)
T ss_pred chhcChHHHHHHHHHHhhCCC--------CCe-----EEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcccc
Confidence 468999998877655443211 122 999999999999999999999831
Q ss_pred -------------CCCceeeeCCCCCCCCCcccccccchhh-hH--------HHHHHcCCCEEEEEeCCCCCCHHHHHHH
Q 001788 692 -------------ASPIMIPLGPRRDHEEPEVRVRGKTALD-KI--------GEAVKRNPFSVILLEDIDEADMVVRGNI 749 (1013)
Q Consensus 692 -------------~~~~~i~id~s~~~~~~~~g~~G~~~~~-~L--------~eal~~~p~~VV~lDEIdka~~~vq~~L 749 (1013)
...+|+.+.++.. ....+|..... .+ .+.+....++|+|||||+++++.+|+.|
T Consensus 71 ~~~~~~~~~~~~~~~~pfv~~p~~~t----~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~L 146 (633)
T TIGR02442 71 CEECRRKYRPSEQRPVPFVNLPLGAT----EDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVL 146 (633)
T ss_pred ChhhhhcccccccCCCCeeeCCCCCc----HHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHH
Confidence 1234554443311 11122321000 00 1122233457999999999999999999
Q ss_pred HHHHHcceEe--cCCCeEeecCceEEEEecCC
Q 001788 750 KRAMERGRLV--DSYGREISLGNVIFILTADW 779 (1013)
Q Consensus 750 L~~le~G~l~--d~~g~~vd~~n~iiI~TSN~ 779 (1013)
+++|++|.++ ..+....--.+.++|+|+|.
T Consensus 147 l~~le~g~~~v~r~g~~~~~~~~~~lIat~np 178 (633)
T TIGR02442 147 LDAAAMGVNRVEREGLSVSHPARFVLIGTMNP 178 (633)
T ss_pred HHHHhcCCEEEEECCceeeecCCeEEEEecCC
Confidence 9999999643 22222111245667888773
No 121
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.09 E-value=7.6e-10 Score=138.44 Aligned_cols=187 Identities=17% Similarity=0.228 Sum_probs=127.3
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCC-------CCceeeeCCCC
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGA-------SPIMIPLGPRR 703 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~-------~~~~i~id~s~ 703 (1013)
+.|+||++.+..+...+.+.. ..+ ++|+||||||||.+|+.||+.+... ...++.+|++.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~--------~~n-----~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~ 248 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK--------KNN-----PLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGS 248 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC--------CCc-----eEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHH
Confidence 458999999998776663221 112 8999999999999999999988433 24566777654
Q ss_pred CCCCCcccccccch--hhhHHHHHHcCCCEEEEEeCCCCCC---------HHHHHHHHHHHHcceEecCCCeEeecCceE
Q 001788 704 DHEEPEVRVRGKTA--LDKIGEAVKRNPFSVILLEDIDEAD---------MVVRGNIKRAMERGRLVDSYGREISLGNVI 772 (1013)
Q Consensus 704 ~~~~~~~g~~G~~~--~~~L~eal~~~p~~VV~lDEIdka~---------~~vq~~LL~~le~G~l~d~~g~~vd~~n~i 772 (1013)
...+ ..|.|.-+ ...+.+.+..+...||||||||.+. .++++.|++.+++|.+.
T Consensus 249 l~a~--~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~------------- 313 (731)
T TIGR02639 249 LLAG--TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLR------------- 313 (731)
T ss_pred Hhhh--ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeE-------------
Confidence 3221 12444211 2233444444556899999999763 56789999999887766
Q ss_pred EEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccC
Q 001788 773 FILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVG 852 (1013)
Q Consensus 773 iI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~ 852 (1013)
+|.+||. +.... ++
T Consensus 314 ~IgaTt~--~e~~~-------------------------------------------------------~~--------- 327 (731)
T TIGR02639 314 CIGSTTY--EEYKN-------------------------------------------------------HF--------- 327 (731)
T ss_pred EEEecCH--HHHHH-------------------------------------------------------Hh---------
Confidence 7888873 00000 00
Q ss_pred CCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhhcCCccee
Q 001788 853 DDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGDALSIE 932 (1013)
Q Consensus 853 ~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~ 932 (1013)
...+.|..|++ .|.+.+++.++..+|++..+..+. . ...+.
T Consensus 328 ---------------------------------~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e-~----~~~v~ 368 (731)
T TIGR02639 328 ---------------------------------EKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYE-E----FHHVK 368 (731)
T ss_pred ---------------------------------hhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHH-h----ccCcc
Confidence 12457888994 799999999999999987665432 2 12468
Q ss_pred cCHHHHHHHHhCC--CCChH
Q 001788 933 ILDEALEKLVGGV--WLGRT 950 (1013)
Q Consensus 933 id~~a~~~L~~~~--~~gar 950 (1013)
++++++++++..+ |.++|
T Consensus 369 i~~~al~~~~~ls~ryi~~r 388 (731)
T TIGR02639 369 YSDEALEAAVELSARYINDR 388 (731)
T ss_pred cCHHHHHHHHHhhhcccccc
Confidence 9999999999866 44554
No 122
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.08 E-value=7.3e-10 Score=131.21 Aligned_cols=128 Identities=16% Similarity=0.202 Sum_probs=78.4
Q ss_pred ccccccHHHHHHHHHHHHHhh--------hhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCC-------CCc
Q 001788 631 EKVWWQQEAASAVATTVTQCK--------LGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGA-------SPI 695 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~--------~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~-------~~~ 695 (1013)
+.|.|.+..++.|..++.... .|+.++++ +||+||||||||++|+++|+.+... ...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~G--------ILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKG--------VLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcc--------eEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 347889999999988876421 12222221 9999999999999999999988532 123
Q ss_pred eeeeCCCCCCCCCcccccccch--hhhHHHHHHc----CCCEEEEEeCCCCCCH------------HHHHHHHHHHHcce
Q 001788 696 MIPLGPRRDHEEPEVRVRGKTA--LDKIGEAVKR----NPFSVILLEDIDEADM------------VVRGNIKRAMERGR 757 (1013)
Q Consensus 696 ~i~id~s~~~~~~~~g~~G~~~--~~~L~eal~~----~p~~VV~lDEIdka~~------------~vq~~LL~~le~G~ 757 (1013)
|+.+..++... .|+|... ...+++..+. ...+||||||||.+-. .+.+.||..|+. .
T Consensus 254 fl~v~~~eLl~----kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDg-l 328 (512)
T TIGR03689 254 FLNIKGPELLN----KYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDG-V 328 (512)
T ss_pred EEeccchhhcc----cccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcc-c
Confidence 44444333221 2555432 2233343333 2458999999997621 234566666642 1
Q ss_pred EecCCCeEeecCceEEEEecCC
Q 001788 758 LVDSYGREISLGNVIFILTADW 779 (1013)
Q Consensus 758 l~d~~g~~vd~~n~iiI~TSN~ 779 (1013)
-...+.+||+|||.
T Consensus 329 --------~~~~~ViVI~ATN~ 342 (512)
T TIGR03689 329 --------ESLDNVIVIGASNR 342 (512)
T ss_pred --------ccCCceEEEeccCC
Confidence 11246789999983
No 123
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.08 E-value=1.4e-09 Score=130.40 Aligned_cols=126 Identities=21% Similarity=0.214 Sum_probs=78.1
Q ss_pred cccccHHHHHHHHHHHHHhhhh-----cCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCC
Q 001788 632 KVWWQQEAASAVATTVTQCKLG-----NGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHE 706 (1013)
Q Consensus 632 ~ViGQ~~ai~~I~~ai~~~~~g-----~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~ 706 (1013)
.|+|++++...+...+...+.. .....|.+ +||+||||||||++|++||.... .+|+.++++++..
T Consensus 56 di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~g------iLL~GppGtGKT~la~alA~~~~---~~~~~i~~~~~~~ 126 (495)
T TIGR01241 56 DVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKG------VLLVGPPGTGKTLLAKAVAGEAG---VPFFSISGSDFVE 126 (495)
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCc------EEEECCCCCCHHHHHHHHHHHcC---CCeeeccHHHHHH
Confidence 4688888887777655432211 11111211 99999999999999999999875 6888888775432
Q ss_pred CCcccccccc--hhhhHHHHHHcCCCEEEEEeCCCCCCH--------------HHHHHHHHHHHcceEecCCCeEeecCc
Q 001788 707 EPEVRVRGKT--ALDKIGEAVKRNPFSVILLEDIDEADM--------------VVRGNIKRAMERGRLVDSYGREISLGN 770 (1013)
Q Consensus 707 ~~~~g~~G~~--~~~~L~eal~~~p~~VV~lDEIdka~~--------------~vq~~LL~~le~G~l~d~~g~~vd~~n 770 (1013)
. |.|.. ....+++..+....+||||||||.+.+ .+.+.||..|+. . . .-.+
T Consensus 127 ~----~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~-~-~-------~~~~ 193 (495)
T TIGR01241 127 M----FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDG-F-G-------TNTG 193 (495)
T ss_pred H----HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcc-c-c-------CCCC
Confidence 1 33322 223444555555558999999988642 234445555531 1 1 1134
Q ss_pred eEEEEecCC
Q 001788 771 VIFILTADW 779 (1013)
Q Consensus 771 ~iiI~TSN~ 779 (1013)
.+||+|||.
T Consensus 194 v~vI~aTn~ 202 (495)
T TIGR01241 194 VIVIAATNR 202 (495)
T ss_pred eEEEEecCC
Confidence 678888873
No 124
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=7.9e-10 Score=116.05 Aligned_cols=99 Identities=22% Similarity=0.362 Sum_probs=74.9
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccccccc--hhhhHHHHHHcCCCEEEEEeCCCC-----
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGKT--ALDKIGEAVKRNPFSVILLEDIDE----- 740 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G~~--~~~~L~eal~~~p~~VV~lDEIdk----- 740 (1013)
+|++||||||||.+|+++|..-- ..||++..|+|... |.|.. ....++...+.+..+||||||||.
T Consensus 192 vllygppg~gktml~kava~~t~---a~firvvgsefvqk----ylgegprmvrdvfrlakenapsiifideidaiatkr 264 (408)
T KOG0727|consen 192 VLLYGPPGTGKTMLAKAVANHTT---AAFIRVVGSEFVQK----YLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKR 264 (408)
T ss_pred eEEeCCCCCcHHHHHHHHhhccc---hheeeeccHHHHHH----HhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhh
Confidence 89999999999999999998654 78999999987544 55543 223455666777779999999984
Q ss_pred ------CCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCC
Q 001788 741 ------ADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADW 779 (1013)
Q Consensus 741 ------a~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~ 779 (1013)
++.++|..|++++.. .|+.... .|+-+||+||.
T Consensus 265 fdaqtgadrevqril~ellnq---mdgfdq~---~nvkvimatnr 303 (408)
T KOG0727|consen 265 FDAQTGADREVQRILIELLNQ---MDGFDQT---TNVKVIMATNR 303 (408)
T ss_pred ccccccccHHHHHHHHHHHHh---ccCcCcc---cceEEEEecCc
Confidence 578899999999963 2232233 34559999984
No 125
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.07 E-value=1.8e-09 Score=117.15 Aligned_cols=65 Identities=11% Similarity=0.004 Sum_probs=52.4
Q ss_pred ChhhHHhhhc--cceecCCCChhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHHHhCCCCChHHHHHHHHHHH
Q 001788 887 PSQDLLNSVD--SAIVFKPVDFGRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLVGGVWLGRTGLEDWTEKVL 960 (1013)
Q Consensus 887 f~pefl~Rid--~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~~~~~~gar~l~~~ie~~l 960 (1013)
+.|+|.+|+. -++.+.|++.+++.+++.+.... . .+.+++++++||+..+-...|.+...++++-
T Consensus 148 ~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~-------~--~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l~ 214 (235)
T PRK08084 148 GLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARL-------R--GFELPEDVGRFLLKRLDREMRTLFMTLDQLD 214 (235)
T ss_pred ccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHH-------c--CCCCCHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 4579999996 68999999999999987653321 1 3789999999999987667799999998854
No 126
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.06 E-value=1.7e-09 Score=136.42 Aligned_cols=187 Identities=16% Similarity=0.211 Sum_probs=125.0
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCC-------CceeeeCCCC
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGAS-------PIMIPLGPRR 703 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~-------~~~i~id~s~ 703 (1013)
+.|+||++.+..+...+.+.+ ..+ ++|+||||||||.+|+.||+.+.... ..++.+|++.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~--------~~n-----~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~ 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR--------QNN-----PILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC--------cCc-----eeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh
Confidence 468999998888777664322 123 89999999999999999999885432 3366777764
Q ss_pred CCCCCcccccccc--hhhhHHHHHHc-CCCEEEEEeCCCCCCH--------HHHHHHHHHHHcceEecCCCeEeecCceE
Q 001788 704 DHEEPEVRVRGKT--ALDKIGEAVKR-NPFSVILLEDIDEADM--------VVRGNIKRAMERGRLVDSYGREISLGNVI 772 (1013)
Q Consensus 704 ~~~~~~~g~~G~~--~~~~L~eal~~-~p~~VV~lDEIdka~~--------~vq~~LL~~le~G~l~d~~g~~vd~~n~i 772 (1013)
...+ ..|.|.- ....+.+.+.+ ....|||||||+.+.. +.-+.|+.+++.|.++
T Consensus 254 l~ag--~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~------------- 318 (852)
T TIGR03345 254 LQAG--ASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELR------------- 318 (852)
T ss_pred hhcc--cccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeE-------------
Confidence 3211 1244331 12233444433 3457999999998742 3445799999988876
Q ss_pred EEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchhhhhhccccccccCCCcccchhhhhccC
Q 001788 773 FILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVG 852 (1013)
Q Consensus 773 iI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~ 852 (1013)
+|.+|+.. ... .|+
T Consensus 319 ~IgaTT~~--e~~-------------------------------------------------------~~~--------- 332 (852)
T TIGR03345 319 TIAATTWA--EYK-------------------------------------------------------KYF--------- 332 (852)
T ss_pred EEEecCHH--HHh-------------------------------------------------------hhh---------
Confidence 88888630 000 000
Q ss_pred CCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhhcCCccee
Q 001788 853 DDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGDALSIE 932 (1013)
Q Consensus 853 ~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~ 932 (1013)
...|.|..|+ .+|.+.|++.++..+|++. +.+..+.. ..+.
T Consensus 333 ---------------------------------~~d~AL~rRf-~~i~v~eps~~~~~~iL~~-~~~~~e~~----~~v~ 373 (852)
T TIGR03345 333 ---------------------------------EKDPALTRRF-QVVKVEEPDEETAIRMLRG-LAPVLEKH----HGVL 373 (852)
T ss_pred ---------------------------------hccHHHHHhC-eEEEeCCCCHHHHHHHHHH-HHHhhhhc----CCCe
Confidence 2346899999 6899999999999999843 33333331 3578
Q ss_pred cCHHHHHHHHhCC--CCChH
Q 001788 933 ILDEALEKLVGGV--WLGRT 950 (1013)
Q Consensus 933 id~~a~~~L~~~~--~~gar 950 (1013)
|+++++++++..+ |.++|
T Consensus 374 i~d~al~~~~~ls~ryi~~r 393 (852)
T TIGR03345 374 ILDEAVVAAVELSHRYIPGR 393 (852)
T ss_pred eCHHHHHHHHHHcccccccc
Confidence 9999999999866 54443
No 127
>CHL00176 ftsH cell division protein; Validated
Probab=99.06 E-value=2.8e-09 Score=130.14 Aligned_cols=103 Identities=18% Similarity=0.210 Sum_probs=65.5
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcc
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEV 710 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~ 710 (1013)
+.|+|.+++.+.+...+...+.... ...++.+...-+||+||||||||++|++||.... .+|+.++++++...
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~-~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~---~p~i~is~s~f~~~--- 255 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPER-FTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE---VPFFSISGSEFVEM--- 255 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHH-HhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC---CCeeeccHHHHHHH---
Confidence 3478888888777766543221110 0000111111299999999999999999999875 78999988865332
Q ss_pred cccccc--hhhhHHHHHHcCCCEEEEEeCCCCC
Q 001788 711 RVRGKT--ALDKIGEAVKRNPFSVILLEDIDEA 741 (1013)
Q Consensus 711 g~~G~~--~~~~L~eal~~~p~~VV~lDEIdka 741 (1013)
+.|.. ....++...+....+||||||||.+
T Consensus 256 -~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l 287 (638)
T CHL00176 256 -FVGVGAARVRDLFKKAKENSPCIVFIDEIDAV 287 (638)
T ss_pred -hhhhhHHHHHHHHHHHhcCCCcEEEEecchhh
Confidence 33322 2233444445555589999999977
No 128
>PRK08727 hypothetical protein; Validated
Probab=99.05 E-value=2.5e-09 Score=115.91 Aligned_cols=167 Identities=18% Similarity=0.188 Sum_probs=112.7
Q ss_pred ceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccccccchhhhHHHHHHc-CCCEEEEEeCCCCCC--
Q 001788 666 MWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKR-NPFSVILLEDIDEAD-- 742 (1013)
Q Consensus 666 ~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~-~p~~VV~lDEIdka~-- 742 (1013)
.|++|+||+|+|||.++++++..+.......+.+++.++. ..+.+.+.. ....+|+||||+.+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~-------------~~~~~~~~~l~~~dlLiIDDi~~l~~~ 108 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA-------------GRLRDALEALEGRSLVALDGLESIAGQ 108 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh-------------hhHHHHHHHHhcCCEEEEeCcccccCC
Confidence 3699999999999999999998876554444555544311 112222211 234699999999884
Q ss_pred HHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhcccccccccc
Q 001788 743 MVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRAS 822 (1013)
Q Consensus 743 ~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~ 822 (1013)
+..+..|+.++...+-. +.-+|+|||..... |
T Consensus 109 ~~~~~~lf~l~n~~~~~----------~~~vI~ts~~~p~~----------------------l---------------- 140 (233)
T PRK08727 109 REDEVALFDFHNRARAA----------GITLLYTARQMPDG----------------------L---------------- 140 (233)
T ss_pred hHHHHHHHHHHHHHHHc----------CCeEEEECCCChhh----------------------h----------------
Confidence 55677788877643211 11278888742210 0
Q ss_pred chhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhh--cccee
Q 001788 823 WLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSV--DSAIV 900 (1013)
Q Consensus 823 ~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Ri--d~iV~ 900 (1013)
..+.|++.+|+ ..++.
T Consensus 141 --------------------------------------------------------------~~~~~dL~SRl~~~~~~~ 158 (233)
T PRK08727 141 --------------------------------------------------------------ALVLPDLRSRLAQCIRIG 158 (233)
T ss_pred --------------------------------------------------------------hhhhHHHHHHHhcCceEE
Confidence 03457888996 35889
Q ss_pred cCCCChhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHHHhCCCCChHHHHHHHHHHHhHHH
Q 001788 901 FKPVDFGRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLVGGVWLGRTGLEDWTEKVLVPSL 964 (1013)
Q Consensus 901 F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~~~~~~gar~l~~~ie~~l~~~l 964 (1013)
|+|++.+++..|++..... ..+.++++++++|+..+--..|.+.+.++.+..-++
T Consensus 159 l~~~~~e~~~~iL~~~a~~---------~~l~l~~e~~~~La~~~~rd~r~~l~~L~~l~~~~~ 213 (233)
T PRK08727 159 LPVLDDVARAAVLRERAQR---------RGLALDEAAIDWLLTHGERELAGLVALLDRLDRESL 213 (233)
T ss_pred ecCCCHHHHHHHHHHHHHH---------cCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999998864332 147899999999999865455778777886654333
No 129
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.05 E-value=1.6e-09 Score=125.02 Aligned_cols=136 Identities=21% Similarity=0.205 Sum_probs=83.0
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcc
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEV 710 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~ 710 (1013)
+.|.|.++.++.|...+..........+.++-.+..-+||+||||||||++|+++|+.+. .+|+.+..+++..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~---~~~~~v~~~~l~~---- 194 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN---ATFIRVVGSELVR---- 194 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC---CCEEecchHHHHH----
Confidence 458999999999988886432110000000001111289999999999999999999886 5677776543221
Q ss_pred cccccch--hhhHHHHHHcCCCEEEEEeCCCCC-----------CHHHHHHHHHHHHcceEecCCCeEeecCceEEEEec
Q 001788 711 RVRGKTA--LDKIGEAVKRNPFSVILLEDIDEA-----------DMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTA 777 (1013)
Q Consensus 711 g~~G~~~--~~~L~eal~~~p~~VV~lDEIdka-----------~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TS 777 (1013)
.|.|... ...+.+..+....+||||||||.+ ++.++..|.+++..-.-.+ ...+++||+||
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~------~~~~v~vI~tt 268 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD------PRGNVKVIAAT 268 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC------CCCCEEEEEec
Confidence 1334321 123334444445589999999986 4567777877775311001 12367799999
Q ss_pred CC
Q 001788 778 DW 779 (1013)
Q Consensus 778 N~ 779 (1013)
|.
T Consensus 269 n~ 270 (364)
T TIGR01242 269 NR 270 (364)
T ss_pred CC
Confidence 73
No 130
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.04 E-value=2.1e-09 Score=121.99 Aligned_cols=114 Identities=18% Similarity=0.241 Sum_probs=69.9
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCC-------------CCcee
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGA-------------SPIMI 697 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~-------------~~~~i 697 (1013)
..|+||++++..+..++.... .+ .+++.|++|+|||+++++|+..+... ...++
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~--------~g-----~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPK--------IG-----GVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMM 70 (337)
T ss_pred cccccHHHHHHHHHHHhcCCC--------CC-----eEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcccc
Confidence 458999999988766654211 12 29999999999999999999988310 01111
Q ss_pred eeCCCC---C-------------CCCCcc-----cccccchhhh-H--------HHHHHcCCCEEEEEeCCCCCCHHHHH
Q 001788 698 PLGPRR---D-------------HEEPEV-----RVRGKTALDK-I--------GEAVKRNPFSVILLEDIDEADMVVRG 747 (1013)
Q Consensus 698 ~id~s~---~-------------~~~~~~-----g~~G~~~~~~-L--------~eal~~~p~~VV~lDEIdka~~~vq~ 747 (1013)
..+|.. + .+ .|. .++|.-.... + .+.+.+..++++|||||+++++.+|.
T Consensus 71 ~~~~r~~~~~~~~~~~~~~~~~~~~-lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~ 149 (337)
T TIGR02030 71 CEEVRIRVDSQEPLSIIKKPVPVVD-LPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVD 149 (337)
T ss_pred ChHHhhhhhcccccccccCCCCcCC-CCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHH
Confidence 111111 0 00 111 1222211000 0 01122233479999999999999999
Q ss_pred HHHHHHHcceE
Q 001788 748 NIKRAMERGRL 758 (1013)
Q Consensus 748 ~LL~~le~G~l 758 (1013)
.|+++|++|.+
T Consensus 150 ~Ll~~l~~g~~ 160 (337)
T TIGR02030 150 VLLDVAASGWN 160 (337)
T ss_pred HHHHHHHhCCe
Confidence 99999999963
No 131
>PHA02244 ATPase-like protein
Probab=99.04 E-value=1.3e-08 Score=115.25 Aligned_cols=132 Identities=14% Similarity=0.034 Sum_probs=90.9
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcc
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEV 710 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~ 710 (1013)
...+|+...+......+.+.... +.| +||.||+|||||.+|++||..+. .+|+.++.... ...-.
T Consensus 96 ~~~ig~sp~~~~~~~ri~r~l~~---~~P--------VLL~GppGtGKTtLA~aLA~~lg---~pfv~In~l~d-~~~L~ 160 (383)
T PHA02244 96 TTKIASNPTFHYETADIAKIVNA---NIP--------VFLKGGAGSGKNHIAEQIAEALD---LDFYFMNAIMD-EFELK 160 (383)
T ss_pred CcccCCCHHHHHHHHHHHHHHhc---CCC--------EEEECCCCCCHHHHHHHHHHHhC---CCEEEEecChH-HHhhc
Confidence 44577777776666655433221 112 99999999999999999999875 57777763210 00001
Q ss_pred ccc---ccchhhhHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCC
Q 001788 711 RVR---GKTALDKIGEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADW 779 (1013)
Q Consensus 711 g~~---G~~~~~~L~eal~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~ 779 (1013)
|+. |.-..+.++.+++ .+.++|||||+.++++++..|..+++++.+...+++...-.+..+|+|+|.
T Consensus 161 G~i~~~g~~~dgpLl~A~~--~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~ 230 (383)
T PHA02244 161 GFIDANGKFHETPFYEAFK--KGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNT 230 (383)
T ss_pred ccccccccccchHHHHHhh--cCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCC
Confidence 121 1112345666654 357999999999999999999999999988776665444466779999995
No 132
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=4.5e-09 Score=118.83 Aligned_cols=124 Identities=14% Similarity=0.197 Sum_probs=80.7
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcc
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEV 710 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~ 710 (1013)
+.|+||+.+++.+..++...+.. . .+||+||.|+||+++|+.+|+.+.+....-.+.|+..+... ..
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~-------h-----a~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~-~~ 70 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFS-------H-----AHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI-NK 70 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCC-------c-----eEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc-cC
Confidence 46899999999998888532221 1 28999999999999999999998754211111111110000 00
Q ss_pred cccccchhhhHHHHHHcC----CCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecC
Q 001788 711 RVRGKTALDKIGEAVKRN----PFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778 (1013)
Q Consensus 711 g~~G~~~~~~L~eal~~~----p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN 778 (1013)
...+.+....+.+.+... .+.|++||++|+++...+|.||+.||+-. .+++||++|+
T Consensus 71 ~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp-----------~~t~~il~~~ 131 (313)
T PRK05564 71 KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPP-----------KGVFIILLCE 131 (313)
T ss_pred CCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCC-----------CCeEEEEEeC
Confidence 112222333344444343 45799999999999999999999998621 3567888774
No 133
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.03 E-value=3e-09 Score=128.92 Aligned_cols=133 Identities=11% Similarity=0.113 Sum_probs=86.8
Q ss_pred hccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCC-------CCceeeeCCC
Q 001788 630 MEKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGA-------SPIMIPLGPR 702 (1013)
Q Consensus 630 ~~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~-------~~~~i~id~s 702 (1013)
.+.++|.++-+..|...|..+..+..+. ..++++|+||||||.+++.+.+.+-.. ...++.+||.
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpn--------nvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSN--------QILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCC--------ceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 3678999999999999998776543221 236799999999999999998776321 2457899985
Q ss_pred CCCCC--------------Cc-ccccccchhhhHHHHHHc--CCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeE
Q 001788 703 RDHEE--------------PE-VRVRGKTALDKIGEAVKR--NPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGRE 765 (1013)
Q Consensus 703 ~~~~~--------------~~-~g~~G~~~~~~L~eal~~--~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~ 765 (1013)
.+... .+ .|+........++..+.. ....||+|||||.+....|..|+.+++--... .
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s--~--- 900 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKI--N--- 900 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhcc--C---
Confidence 43211 11 111111122334443322 23458999999999887888999888742211 1
Q ss_pred eecCceEEEEecC
Q 001788 766 ISLGNVIFILTAD 778 (1013)
Q Consensus 766 vd~~n~iiI~TSN 778 (1013)
...+||+.||
T Consensus 901 ---SKLiLIGISN 910 (1164)
T PTZ00112 901 ---SKLVLIAISN 910 (1164)
T ss_pred ---CeEEEEEecC
Confidence 2356888887
No 134
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.02 E-value=2.7e-09 Score=121.08 Aligned_cols=134 Identities=15% Similarity=0.179 Sum_probs=78.4
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCC----CceeeeCCCC---
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGAS----PIMIPLGPRR--- 703 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~----~~~i~id~s~--- 703 (1013)
..|+||++++..+..++...+ ++. +||.|++|+|||++||.+++.+.... .+|. .+...
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~--------~~~-----vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p~~p~~ 82 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPK--------IGG-----VMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHPSDPEL 82 (350)
T ss_pred HHHhChHHHHHHHHHhccCCC--------CCe-----EEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCCCChhh
Confidence 458999999888877765322 222 89999999999999999999986432 2232 11000
Q ss_pred -------CC-CC--------------Cccc-----cccc-chhhhHH--------HHHHcCCCEEEEEeCCCCCCHHHHH
Q 001788 704 -------DH-EE--------------PEVR-----VRGK-TALDKIG--------EAVKRNPFSVILLEDIDEADMVVRG 747 (1013)
Q Consensus 704 -------~~-~~--------------~~~g-----~~G~-~~~~~L~--------eal~~~p~~VV~lDEIdka~~~vq~ 747 (1013)
+. .+ .|.+ .+|. +....+. +.+.+..+++||+|||+++++.+|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~ 162 (350)
T CHL00081 83 MSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVD 162 (350)
T ss_pred hchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHH
Confidence 00 00 0000 1110 0000011 1122333579999999999999999
Q ss_pred HHHHHHHcceEec-CCCeEeec-CceEEEEecC
Q 001788 748 NIKRAMERGRLVD-SYGREISL-GNVIFILTAD 778 (1013)
Q Consensus 748 ~LL~~le~G~l~d-~~g~~vd~-~n~iiI~TSN 778 (1013)
.|+++|++|..+- ..|..... ...++|.|.|
T Consensus 163 ~LLeam~e~~~~ier~G~s~~~p~rfiviaT~n 195 (350)
T CHL00081 163 ILLDSAASGWNTVEREGISIRHPARFVLVGSGN 195 (350)
T ss_pred HHHHHHHhCCeEEeeCCeeeecCCCEEEEeccC
Confidence 9999999976542 22332222 2344555554
No 135
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.02 E-value=8.1e-10 Score=109.80 Aligned_cols=109 Identities=17% Similarity=0.168 Sum_probs=81.9
Q ss_pred cccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCccccc
Q 001788 634 WWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVR 713 (1013)
Q Consensus 634 iGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~ 713 (1013)
||++.++..+...+.+......+ +++.|++|+||+.+|++|+........+|+.++|....
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~p-----------vli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSP-----------VLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS------------EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC--------
T ss_pred CCCCHHHHHHHHHHHHHhCCCCc-----------EEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc--------
Confidence 68899999999999876642211 99999999999999999999887767788888877421
Q ss_pred ccchhhhHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCC
Q 001788 714 GKTALDKIGEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADW 779 (1013)
Q Consensus 714 G~~~~~~L~eal~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~ 779 (1013)
.+.+....+..+||+|||.++++.|..|+++++... -.++.+|+||+.
T Consensus 62 --------~~~l~~a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~----------~~~~RlI~ss~~ 109 (138)
T PF14532_consen 62 --------AELLEQAKGGTLYLKNIDRLSPEAQRRLLDLLKRQE----------RSNVRLIASSSQ 109 (138)
T ss_dssp --------HHHHHHCTTSEEEEECGCCS-HHHHHHHHHHHHHCT----------TTTSEEEEEECC
T ss_pred --------HHHHHHcCCCEEEECChHHCCHHHHHHHHHHHHhcC----------CCCeEEEEEeCC
Confidence 223333466899999999999999999999998632 134468999864
No 136
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=2.7e-09 Score=123.85 Aligned_cols=128 Identities=16% Similarity=0.286 Sum_probs=88.1
Q ss_pred cccccHHHHHHHHHHHHHh-------hhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCC
Q 001788 632 KVWWQQEAASAVATTVTQC-------KLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRD 704 (1013)
Q Consensus 632 ~ViGQ~~ai~~I~~ai~~~-------~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~ 704 (1013)
.|-|-+..+..++..+... ..|..|.|+ +||+||||||||.||++||..+. .||+.+...+.
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprG--------vLlHGPPGCGKT~lA~AiAgel~---vPf~~isApei 259 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRG--------VLLHGPPGCGKTSLANAIAGELG---VPFLSISAPEI 259 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCc--------eeeeCCCCccHHHHHHHHhhhcC---CceEeecchhh
Confidence 4566676666666666542 224444443 99999999999999999999987 89999998864
Q ss_pred CCCCcccccccch--hhhHHHHHHcCCCEEEEEeCCCCCCH-----------HHHHHHHHHHHcceEecCCCeEeecCce
Q 001788 705 HEEPEVRVRGKTA--LDKIGEAVKRNPFSVILLEDIDEADM-----------VVRGNIKRAMERGRLVDSYGREISLGNV 771 (1013)
Q Consensus 705 ~~~~~~g~~G~~~--~~~L~eal~~~p~~VV~lDEIdka~~-----------~vq~~LL~~le~G~l~d~~g~~vd~~n~ 771 (1013)
.. |+-|..+ ...+++....+-.+||||||||-..| .+...||..|++=......| ..+
T Consensus 260 vS----GvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g-----~~V 330 (802)
T KOG0733|consen 260 VS----GVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKG-----DPV 330 (802)
T ss_pred hc----ccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCC-----CCe
Confidence 33 4666654 34555555555559999999997764 35566777776543332223 236
Q ss_pred EEEEecCC
Q 001788 772 IFILTADW 779 (1013)
Q Consensus 772 iiI~TSN~ 779 (1013)
++|.+||.
T Consensus 331 lVIgATnR 338 (802)
T KOG0733|consen 331 LVIGATNR 338 (802)
T ss_pred EEEecCCC
Confidence 78999984
No 137
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.01 E-value=8.6e-09 Score=117.88 Aligned_cols=125 Identities=17% Similarity=0.315 Sum_probs=80.6
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCC----cee-eeCCCCC-
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASP----IMI-PLGPRRD- 704 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~----~~i-~id~s~~- 704 (1013)
..++||++++..+..++...+.. .. +||+||+|+|||++|+.+|+.+..... +.. ...+...
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl~-------ha-----~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~ 90 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKLH-------HA-----LLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASP 90 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCCC-------ee-----EeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCH
Confidence 45899999999999988644321 12 999999999999999999999986321 111 0011000
Q ss_pred -----CCCCcccc-----------------cccchhhhHHHHHHc----CCCEEEEEeCCCCCCHHHHHHHHHHHHcceE
Q 001788 705 -----HEEPEVRV-----------------RGKTALDKIGEAVKR----NPFSVILLEDIDEADMVVRGNIKRAMERGRL 758 (1013)
Q Consensus 705 -----~~~~~~g~-----------------~G~~~~~~L~eal~~----~p~~VV~lDEIdka~~~vq~~LL~~le~G~l 758 (1013)
..+..|++ ++.+....+.+.+.. ..+.||+|||+|+++...+|.||+.+|+..
T Consensus 91 ~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp- 169 (351)
T PRK09112 91 VWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPP- 169 (351)
T ss_pred HHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCC-
Confidence 01111211 111122234444443 356799999999999999999999998632
Q ss_pred ecCCCeEeecCceEEEEecC
Q 001788 759 VDSYGREISLGNVIFILTAD 778 (1013)
Q Consensus 759 ~d~~g~~vd~~n~iiI~TSN 778 (1013)
.+++||+.|+
T Consensus 170 ----------~~~~fiLit~ 179 (351)
T PRK09112 170 ----------ARALFILISH 179 (351)
T ss_pred ----------CCceEEEEEC
Confidence 3456777764
No 138
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.00 E-value=3.9e-09 Score=118.16 Aligned_cols=64 Identities=23% Similarity=0.333 Sum_probs=46.2
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCC
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRR 703 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~ 703 (1013)
..++||.+|=++..-.+...+.+.-..|. +||.||||||||.+|.+||+.| |...||+.+..|+
T Consensus 24 ~GlVGQ~~AReAagiiv~mIk~~K~aGr~--------iLiaGppGtGKTAlA~~ia~eL-G~~~PF~~isgSE 87 (398)
T PF06068_consen 24 DGLVGQEKAREAAGIIVDMIKEGKIAGRA--------ILIAGPPGTGKTALAMAIAKEL-GEDVPFVSISGSE 87 (398)
T ss_dssp TTEES-HHHHHHHHHHHHHHHTT--TT-E--------EEEEE-TTSSHHHHHHHHHHHC-TTTS-EEEEEGGG
T ss_pred ccccChHHHHHHHHHHHHHHhcccccCcE--------EEEeCCCCCCchHHHHHHHHHh-CCCCCeeEcccce
Confidence 46899998887766666655555322222 9999999999999999999999 4778999888765
No 139
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.98 E-value=6.3e-09 Score=123.84 Aligned_cols=133 Identities=17% Similarity=0.225 Sum_probs=81.7
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCC-----
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDH----- 705 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~----- 705 (1013)
+.|+||..++..+..++. +- ..++|.||+|+|||++|+.|+..+...... +.++.....
T Consensus 192 ~dv~Gq~~~~~al~~aa~----~g-----------~~vlliG~pGsGKTtlar~l~~llp~~~~~-~~le~~~i~s~~g~ 255 (499)
T TIGR00368 192 KDIKGQQHAKRALEIAAA----GG-----------HNLLLFGPPGSGKTMLASRLQGILPPLTNE-EAIETARIWSLVGK 255 (499)
T ss_pred HHhcCcHHHHhhhhhhcc----CC-----------CEEEEEecCCCCHHHHHHHHhcccCCCCCc-EEEeccccccchhh
Confidence 458999988776555442 11 129999999999999999999876532111 111111100
Q ss_pred --------C---------CCcccccccchhhhHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEec--CCCeEe
Q 001788 706 --------E---------EPEVRVRGKTALDKIGEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVD--SYGREI 766 (1013)
Q Consensus 706 --------~---------~~~~g~~G~~~~~~L~eal~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d--~~g~~v 766 (1013)
. .+.+..+|.... .-.+.+....++|+|||||+++++.+|+.|++.||+|.++- .++...
T Consensus 256 ~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~-~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~ 334 (499)
T TIGR00368 256 LIDRKQIKQRPFRSPHHSASKPALVGGGPI-PLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIF 334 (499)
T ss_pred hccccccccCCccccccccchhhhhCCccc-cchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCccee
Confidence 0 001111221000 11223444556899999999999999999999999998752 222222
Q ss_pred ecCceEEEEecCCC
Q 001788 767 SLGNVIFILTADWL 780 (1013)
Q Consensus 767 d~~n~iiI~TSN~g 780 (1013)
.-.+..+|+++|-.
T Consensus 335 ~pa~frlIaa~Npc 348 (499)
T TIGR00368 335 YPARFQLVAAMNPC 348 (499)
T ss_pred ccCCeEEEEecCCc
Confidence 23466799999853
No 140
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.97 E-value=4.8e-09 Score=118.31 Aligned_cols=125 Identities=18% Similarity=0.224 Sum_probs=82.2
Q ss_pred hccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCc-------eeeeCCC
Q 001788 630 MEKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPI-------MIPLGPR 702 (1013)
Q Consensus 630 ~~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~-------~i~id~s 702 (1013)
.+.|+||++++..+..++...+.. .+ +||+||+|+||+.+|+++|+.+++.... +...+-.
T Consensus 3 f~~iiGq~~~~~~L~~~i~~~rl~-------ha-----~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQNRIA-------PA-----YLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCC-------ce-----EEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 357899999999999998754431 12 9999999999999999999999865310 0000000
Q ss_pred CCC--------CCC--cc-------------cccccchhhhHHHHHHcC----CCEEEEEeCCCCCCHHHHHHHHHHHHc
Q 001788 703 RDH--------EEP--EV-------------RVRGKTALDKIGEAVKRN----PFSVILLEDIDEADMVVRGNIKRAMER 755 (1013)
Q Consensus 703 ~~~--------~~~--~~-------------g~~G~~~~~~L~eal~~~----p~~VV~lDEIdka~~~vq~~LL~~le~ 755 (1013)
++. .+. .. +..+.+....+.+.+... ++.|++||++|+|+...+|.||+.||+
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEE 150 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE 150 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhC
Confidence 000 000 00 001111223455555544 467999999999999999999999986
Q ss_pred ceEecCCCeEeecCceEEEEecC
Q 001788 756 GRLVDSYGREISLGNVIFILTAD 778 (1013)
Q Consensus 756 G~l~d~~g~~vd~~n~iiI~TSN 778 (1013)
-- +++||++|+
T Consensus 151 Pp------------~~~fILi~~ 161 (314)
T PRK07399 151 PG------------NGTLILIAP 161 (314)
T ss_pred CC------------CCeEEEEEC
Confidence 21 345788774
No 141
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=8.6e-09 Score=117.99 Aligned_cols=128 Identities=21% Similarity=0.238 Sum_probs=86.7
Q ss_pred hccccccHHHHHHHHHHHHHhhh-----hcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCC
Q 001788 630 MEKVWWQQEAASAVATTVTQCKL-----GNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRD 704 (1013)
Q Consensus 630 ~~~ViGQ~~ai~~I~~ai~~~~~-----g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~ 704 (1013)
.+.|-|-|+|..++-..+.-.+. .++-.-|.| +|++||||||||.|||++|-.-. .||.....++|
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKG------VLLvGPPGTGKTlLARAvAGEA~---VPFF~~sGSEF 373 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKG------VLLVGPPGTGKTLLARAVAGEAG---VPFFYASGSEF 373 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCc------eEEeCCCCCchhHHHHHhhcccC---CCeEeccccch
Confidence 46789999998777666643322 122222333 99999999999999999998654 89999888887
Q ss_pred CCCCcccccccch--hhhHHHHHHcCCCEEEEEeCCCCCC-----------HHHHHHHHHHHHcceEecCCCeEeecCce
Q 001788 705 HEEPEVRVRGKTA--LDKIGEAVKRNPFSVILLEDIDEAD-----------MVVRGNIKRAMERGRLVDSYGREISLGNV 771 (1013)
Q Consensus 705 ~~~~~~g~~G~~~--~~~L~eal~~~p~~VV~lDEIdka~-----------~~vq~~LL~~le~G~l~d~~g~~vd~~n~ 771 (1013)
.+- |+|... ...|+.+.+.+..+||||||||-.. ....|.||--|+ |. .-+ ...
T Consensus 374 dEm----~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmD-GF-~qN-------eGi 440 (752)
T KOG0734|consen 374 DEM----FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMD-GF-KQN-------EGI 440 (752)
T ss_pred hhh----hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhc-Cc-CcC-------Cce
Confidence 554 776543 3467777777767999999999642 124445554442 22 111 246
Q ss_pred EEEEecCC
Q 001788 772 IFILTADW 779 (1013)
Q Consensus 772 iiI~TSN~ 779 (1013)
|||.+||.
T Consensus 441 IvigATNf 448 (752)
T KOG0734|consen 441 IVIGATNF 448 (752)
T ss_pred EEEeccCC
Confidence 78888884
No 142
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.96 E-value=7.4e-09 Score=115.95 Aligned_cols=105 Identities=16% Similarity=0.149 Sum_probs=77.2
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccccccc-------------hhhhHHHHHHcCCCEEEE
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGKT-------------ALDKIGEAVKRNPFSVIL 734 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G~~-------------~~~~L~eal~~~p~~VV~ 734 (1013)
++|.||||||||++|+.||+.+. .++++++++..... ..++|.. ..|.|..+.+. +.++|
T Consensus 67 ilL~G~pGtGKTtla~~lA~~l~---~~~~rV~~~~~l~~--~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~--g~ill 139 (327)
T TIGR01650 67 VMVQGYHGTGKSTHIEQIAARLN---WPCVRVNLDSHVSR--IDLVGKDAIVLKDGKQITEFRDGILPWALQH--NVALC 139 (327)
T ss_pred EEEEeCCCChHHHHHHHHHHHHC---CCeEEEEecCCCCh--hhcCCCceeeccCCcceeEEecCcchhHHhC--CeEEE
Confidence 99999999999999999999997 78888887654321 1122221 12345555443 37899
Q ss_pred EeCCCCCCHHHHHHHHHHHH-cceEecC-CCeEeecC-ceEEEEecCC
Q 001788 735 LEDIDEADMVVRGNIKRAME-RGRLVDS-YGREISLG-NVIFILTADW 779 (1013)
Q Consensus 735 lDEIdka~~~vq~~LL~~le-~G~l~d~-~g~~vd~~-n~iiI~TSN~ 779 (1013)
||||+.++|+++..|..+|| +|.++-. .++.+... +-++|+|.|-
T Consensus 140 lDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np 187 (327)
T TIGR01650 140 FDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANT 187 (327)
T ss_pred echhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCC
Confidence 99999999999999999999 4677643 45666333 5668999983
No 143
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=4.8e-09 Score=125.98 Aligned_cols=98 Identities=15% Similarity=0.218 Sum_probs=72.1
Q ss_pred cCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-c-ccchhhhHHHHHHHHHHHHhhcCCCCceEEEecchhHH
Q 001788 204 GGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-F-TCDKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKWL 279 (1013)
Q Consensus 204 vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~-~~~rge~e~r~~~l~~~~~~~~~~~~~~il~idel~~l 279 (1013)
-|.+ |||.++..++.. +...+.++.. + +.+.|+-+.++.+++..++.. .+.|+|+||++.+
T Consensus 24 ~g~~~~~~t~~~~~~a~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~----~~~ii~~d~~~~~ 88 (494)
T COG0464 24 HGPPGTGKTLLARALANE-----------GAEFLSINGPEILSKYVGESELRLRELFEEAEKL----APSIIFIDEIDAL 88 (494)
T ss_pred eCCCCCchhHHHHHHHhc-----------cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHh----CCCeEeechhhhc
Confidence 7888 899999999987 2223333433 3 459999999999999999984 5699999999999
Q ss_pred HhcccccCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEec
Q 001788 280 VEQQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTA 329 (1013)
Q Consensus 280 ~~~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~Igat 329 (1013)
........ ......+|+++..++...- +|.+-++|+|
T Consensus 89 ~~~~~~~~-----------~~~~~~v~~~l~~~~d~~~--~~~v~~~~~~ 125 (494)
T COG0464 89 APKRSSDQ-----------GEVERRVVAQLLALMDGLK--RGQVIVIGAT 125 (494)
T ss_pred ccCccccc-----------cchhhHHHHHHHHhccccc--CCceEEEeec
Confidence 98875411 2356677778888777655 5556666644
No 144
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.96 E-value=1.6e-09 Score=105.37 Aligned_cols=97 Identities=19% Similarity=0.257 Sum_probs=69.7
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccccccc--hhhhHHHHHHcCC-CEEEEEeCCCCCCHH
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGKT--ALDKIGEAVKRNP-FSVILLEDIDEADMV 744 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G~~--~~~~L~eal~~~p-~~VV~lDEIdka~~~ 744 (1013)
+||+||+|+|||++|+.+|+.+. .+++.+++++.... +.+.. ....+....+... .+||||||+|++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~---~~~~~i~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~ 73 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG---FPFIEIDGSELISS----YAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPK 73 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT---SEEEEEETTHHHTS----STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcc---cccccccccccccc----cccccccccccccccccccccceeeeeccchhcccc
Confidence 68999999999999999999985 78899998864321 22221 1223333444443 599999999999876
Q ss_pred H-----------HHHHHHHHHcceEecCCCeEeecCceEEEEecCC
Q 001788 745 V-----------RGNIKRAMERGRLVDSYGREISLGNVIFILTADW 779 (1013)
Q Consensus 745 v-----------q~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~ 779 (1013)
. ++.|+..+++..-. -++.+||+|||.
T Consensus 74 ~~~~~~~~~~~~~~~L~~~l~~~~~~--------~~~~~vI~ttn~ 111 (132)
T PF00004_consen 74 SQPSSSSFEQRLLNQLLSLLDNPSSK--------NSRVIVIATTNS 111 (132)
T ss_dssp CSTSSSHHHHHHHHHHHHHHHTTTTT--------SSSEEEEEEESS
T ss_pred cccccccccccccceeeecccccccc--------cccceeEEeeCC
Confidence 5 88888888754321 245789999973
No 145
>CHL00206 ycf2 Ycf2; Provisional
Probab=98.94 E-value=7.2e-09 Score=133.56 Aligned_cols=103 Identities=14% Similarity=0.113 Sum_probs=70.5
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccc-----------------------------------
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRV----------------------------------- 712 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~----------------------------------- 712 (1013)
+|++||||||||++|++||...+ .||+.+.++++.+..+.||
T Consensus 1633 ILLiGPPGTGKTlLAKALA~es~---VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~~~ 1709 (2281)
T CHL00206 1633 ILVIGSIGTGRSYLVKYLATNSY---VPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNALT 1709 (2281)
T ss_pred eEEECCCCCCHHHHHHHHHHhcC---CceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcchhh
Confidence 99999999999999999999876 8999999887654322111
Q ss_pred --cccch----hhhHHHHHHcCCCEEEEEeCCCCCCHH-----HHHHHHHHHHcceEecCCCeEeecCceEEEEecCC
Q 001788 713 --RGKTA----LDKIGEAVKRNPFSVILLEDIDEADMV-----VRGNIKRAMERGRLVDSYGREISLGNVIFILTADW 779 (1013)
Q Consensus 713 --~G~~~----~~~L~eal~~~p~~VV~lDEIdka~~~-----vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~ 779 (1013)
.+... ...+.+..++...+||||||||.+... ..+.|+..|+...- ..+..++|||+|||.
T Consensus 1710 ~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~------~~s~~~VIVIAATNR 1781 (2281)
T CHL00206 1710 MDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCE------RCSTRNILVIASTHI 1781 (2281)
T ss_pred hhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhccccc------cCCCCCEEEEEeCCC
Confidence 11111 123455556666699999999998753 35667777753111 112357889999984
No 146
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.93 E-value=1.2e-08 Score=106.82 Aligned_cols=100 Identities=22% Similarity=0.291 Sum_probs=63.4
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCC----ce-eeeCCCCCCCCCcc---------cccccchhhhHHHHHHc----CC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASP----IM-IPLGPRRDHEEPEV---------RVRGKTALDKIGEAVKR----NP 729 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~----~~-i~id~s~~~~~~~~---------g~~G~~~~~~L~eal~~----~p 729 (1013)
+||+||+|+|||++|+.+++.+.+... +. ...+|.....+..+ +..+.+....+.+.+.. .+
T Consensus 17 ~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~ 96 (188)
T TIGR00678 17 YLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTPQESG 96 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCcccCC
Confidence 999999999999999999999975310 00 00000000000001 11222333334555544 34
Q ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecC
Q 001788 730 FSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778 (1013)
Q Consensus 730 ~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN 778 (1013)
+.||+|||+|+++...++.|+..|++.. .+++||++||
T Consensus 97 ~kviiide~~~l~~~~~~~Ll~~le~~~-----------~~~~~il~~~ 134 (188)
T TIGR00678 97 RRVVIIEDAERMNEAAANALLKTLEEPP-----------PNTLFILITP 134 (188)
T ss_pred eEEEEEechhhhCHHHHHHHHHHhcCCC-----------CCeEEEEEEC
Confidence 5799999999999999999999998622 3566888775
No 147
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=1.3e-08 Score=116.90 Aligned_cols=125 Identities=14% Similarity=0.249 Sum_probs=80.9
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCc----e----eeeC-C
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPI----M----IPLG-P 701 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~----~----i~id-~ 701 (1013)
.+|+||+++++.+..++.+.+..+ + +||+||+|+||+++|..+|+.++..... + ..++ |
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~H-------A-----~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~ 86 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLHH-------A-----WLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAID 86 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCCc-------e-----EEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCC
Confidence 358999999999999887544321 2 9999999999999999999999864310 0 0000 1
Q ss_pred CCC------CCCCcccc-----------------cccchhhhHHHHHHc----CCCEEEEEeCCCCCCHHHHHHHHHHHH
Q 001788 702 RRD------HEEPEVRV-----------------RGKTALDKIGEAVKR----NPFSVILLEDIDEADMVVRGNIKRAME 754 (1013)
Q Consensus 702 s~~------~~~~~~g~-----------------~G~~~~~~L~eal~~----~p~~VV~lDEIdka~~~vq~~LL~~le 754 (1013)
... ..+..|++ ++.+....+.+.+.. ..+.||+|||+|++++..+|.||+.++
T Consensus 87 ~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LE 166 (365)
T PRK07471 87 PDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLE 166 (365)
T ss_pred CCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHh
Confidence 000 00111111 011122233333332 345799999999999999999999998
Q ss_pred cceEecCCCeEeecCceEEEEecC
Q 001788 755 RGRLVDSYGREISLGNVIFILTAD 778 (1013)
Q Consensus 755 ~G~l~d~~g~~vd~~n~iiI~TSN 778 (1013)
+-. .+++||++|+
T Consensus 167 epp-----------~~~~~IL~t~ 179 (365)
T PRK07471 167 EPP-----------ARSLFLLVSH 179 (365)
T ss_pred cCC-----------CCeEEEEEEC
Confidence 632 3456788775
No 148
>PRK05642 DNA replication initiation factor; Validated
Probab=98.91 E-value=2e-08 Score=108.99 Aligned_cols=163 Identities=14% Similarity=0.136 Sum_probs=111.4
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccccccchhhhHHHHHHcCCCEEEEEeCCCCCC--HHH
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKRNPFSVILLEDIDEAD--MVV 745 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~~p~~VV~lDEIdka~--~~v 745 (1013)
++|+||+|+|||.|++++++.+.......+.+++.++... ...+.+.++. ..+|+||+|+... +..
T Consensus 48 l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~----------~~~~~~~~~~--~d~LiiDDi~~~~~~~~~ 115 (234)
T PRK05642 48 IYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR----------GPELLDNLEQ--YELVCLDDLDVIAGKADW 115 (234)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh----------hHHHHHhhhh--CCEEEEechhhhcCChHH
Confidence 8999999999999999999877544445566665542210 1233344443 3689999998764 566
Q ss_pred HHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchh
Q 001788 746 RGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLD 825 (1013)
Q Consensus 746 q~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~ 825 (1013)
+..|+.+++.- .+ ++..+|+|++.....+
T Consensus 116 ~~~Lf~l~n~~--~~--------~g~~ilits~~~p~~l----------------------------------------- 144 (234)
T PRK05642 116 EEALFHLFNRL--RD--------SGRRLLLAASKSPREL----------------------------------------- 144 (234)
T ss_pred HHHHHHHHHHH--Hh--------cCCEEEEeCCCCHHHc-----------------------------------------
Confidence 77888888531 11 1223788886421100
Q ss_pred hhhhccccccccCCCcccchhhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhc--cceecCC
Q 001788 826 EEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVD--SAIVFKP 903 (1013)
Q Consensus 826 ~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid--~iV~F~P 903 (1013)
..+.|++.+|+. .++.+.|
T Consensus 145 -----------------------------------------------------------~~~~~~L~SRl~~gl~~~l~~ 165 (234)
T PRK05642 145 -----------------------------------------------------------PIKLPDLKSRLTLALVFQMRG 165 (234)
T ss_pred -----------------------------------------------------------CccCccHHHHHhcCeeeecCC
Confidence 023568899985 4677799
Q ss_pred CChhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHHHhCCCCChHHHHHHHHHHHh
Q 001788 904 VDFGRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLVGGVWLGRTGLEDWTEKVLV 961 (1013)
Q Consensus 904 l~~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~~~~~~gar~l~~~ie~~l~ 961 (1013)
++.++...+++..... . .+.+++++++||+...-...|.+...++++-.
T Consensus 166 ~~~e~~~~il~~ka~~-------~--~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~ 214 (234)
T PRK05642 166 LSDEDKLRALQLRASR-------R--GLHLTDEVGHFILTRGTRSMSALFDLLERLDQ 214 (234)
T ss_pred CCHHHHHHHHHHHHHH-------c--CCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 9999999998753321 1 37899999999999876667999999887753
No 149
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.90 E-value=4.3e-09 Score=107.66 Aligned_cols=121 Identities=20% Similarity=0.278 Sum_probs=77.2
Q ss_pred ccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCcee---------eeCCCCCC
Q 001788 635 WQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMI---------PLGPRRDH 705 (1013)
Q Consensus 635 GQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i---------~id~s~~~ 705 (1013)
||+++++.+...+...+... .+||+||+|+||+++|+.+|+.+++....-. .++...+.
T Consensus 1 gq~~~~~~L~~~~~~~~l~h------------a~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPH------------ALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--S------------EEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHcCCcce------------eEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 89999999988886444321 1899999999999999999999987643210 00000000
Q ss_pred C---CCccc---ccccchhhhHHHHHHc----CCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEE
Q 001788 706 E---EPEVR---VRGKTALDKIGEAVKR----NPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFIL 775 (1013)
Q Consensus 706 ~---~~~~g---~~G~~~~~~L~eal~~----~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~ 775 (1013)
+ -.+.+ ..+.+....+.+.+.. .++.|++|||+|+|..+.||.||+.||+-. .+++||+
T Consensus 69 d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp-----------~~~~fiL 137 (162)
T PF13177_consen 69 DFIIIKPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPP-----------ENTYFIL 137 (162)
T ss_dssp TEEEEETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTT-----------TTEEEEE
T ss_pred ceEEEecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCC-----------CCEEEEE
Confidence 0 00000 1222233344444333 356799999999999999999999999632 4677899
Q ss_pred ecC
Q 001788 776 TAD 778 (1013)
Q Consensus 776 TSN 778 (1013)
+|+
T Consensus 138 ~t~ 140 (162)
T PF13177_consen 138 ITN 140 (162)
T ss_dssp EES
T ss_pred EEC
Confidence 885
No 150
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.89 E-value=3e-08 Score=119.25 Aligned_cols=155 Identities=17% Similarity=0.178 Sum_probs=93.9
Q ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeee
Q 001788 620 DSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPL 699 (1013)
Q Consensus 620 e~l~~L~~~L~~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~i 699 (1013)
+-+..|.+.+...|+|++.+...+.-++.-.... ....+..-+.+.++||.|+||+|||.+|+.+++.+.+. .|+..
T Consensus 192 ~~~~~l~~si~p~i~G~~~~k~~l~l~l~gg~~~-~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~--~~~~~ 268 (509)
T smart00350 192 DIYERLSRSLAPSIYGHEDIKKAILLLLFGGVHK-NLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRA--VYTTG 268 (509)
T ss_pred HHHHHHHHhhCccccCcHHHHHHHHHHHhCCCcc-ccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcc--eEcCC
Confidence 3456677888889999998876666555421110 00111112345679999999999999999999987533 33321
Q ss_pred ---CCCCCCCCCccc-ccccchhhhHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecC-CCeEeec-CceEE
Q 001788 700 ---GPRRDHEEPEVR-VRGKTALDKIGEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDS-YGREISL-GNVIF 773 (1013)
Q Consensus 700 ---d~s~~~~~~~~g-~~G~~~~~~L~eal~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~-~g~~vd~-~n~ii 773 (1013)
++..+....... ..|.- ..-.+++.....++++|||++++++..|..|+++|+++.++-. .|....+ .++.+
T Consensus 269 ~~~~~~~l~~~~~~~~~~g~~--~~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~v 346 (509)
T smart00350 269 KGSSAVGLTAAVTRDPETREF--TLEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSV 346 (509)
T ss_pred CCCCcCCccccceEccCcceE--EecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEE
Confidence 111110000000 00100 0001122334457999999999999999999999999987643 2433222 35668
Q ss_pred EEecCC
Q 001788 774 ILTADW 779 (1013)
Q Consensus 774 I~TSN~ 779 (1013)
|+|+|-
T Consensus 347 iAa~NP 352 (509)
T smart00350 347 LAAANP 352 (509)
T ss_pred EEEeCC
Confidence 999984
No 151
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.88 E-value=2.1e-09 Score=106.50 Aligned_cols=106 Identities=24% Similarity=0.303 Sum_probs=70.6
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCccccccc---------chhhhHHHHHHcCCCEEEEEeCC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGK---------TALDKIGEAVKRNPFSVILLEDI 738 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G~---------~~~~~L~eal~~~p~~VV~lDEI 738 (1013)
+++.||||+|||++|+.+|+.+. .+++.+.++...+.. .+.|. -..+.+..+++ ...|+|||||
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~---~~~~~i~~~~~~~~~--dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lDEi 74 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG---RPVIRINCSSDTTEE--DLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLDEI 74 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT---CEEEEEE-TTTSTHH--HHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEESSC
T ss_pred EEEECCCCCCHHHHHHHHHHHhh---cceEEEEeccccccc--cceeeeeeccccccccccccccccc--ceeEEEECCc
Confidence 89999999999999999999994 677777776533210 01110 01223333333 3479999999
Q ss_pred CCCCHHHHHHHHHHHHcceEecCCC-eEeecC-------ceEEEEecCCC
Q 001788 739 DEADMVVRGNIKRAMERGRLVDSYG-REISLG-------NVIFILTADWL 780 (1013)
Q Consensus 739 dka~~~vq~~LL~~le~G~l~d~~g-~~vd~~-------n~iiI~TSN~g 780 (1013)
+++++.++..|+.+++++++....+ ..+... +.+||+|+|-.
T Consensus 75 n~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~ 124 (139)
T PF07728_consen 75 NRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPR 124 (139)
T ss_dssp GG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSS
T ss_pred ccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCC
Confidence 9999999999999999998874333 333333 37899999953
No 152
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.88 E-value=6.3e-10 Score=107.66 Aligned_cols=105 Identities=22% Similarity=0.296 Sum_probs=61.7
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccccccchhhhHHHH--HHcCC--CEEEEEeCCCCCCH
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGKTALDKIGEA--VKRNP--FSVILLEDIDEADM 743 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G~~~~~~L~ea--l~~~p--~~VV~lDEIdka~~ 743 (1013)
+|+.|+||+|||++|++||+.+. ..|.++.+... -.|....|....+.-... ++..| ..|+|+|||.+++|
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~---~~f~RIq~tpd--llPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrapp 76 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLG---LSFKRIQFTPD--LLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAPP 76 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT-----EEEEE--TT----HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS-H
T ss_pred EeeECCCccHHHHHHHHHHHHcC---CceeEEEecCC--CCcccceeeeeeccCCCeeEeecChhhhceeeecccccCCH
Confidence 89999999999999999999987 45666655421 112222222111000000 00111 25999999999999
Q ss_pred HHHHHHHHHHHcceEecCCCeEeecCceEE-EEecC
Q 001788 744 VVRGNIKRAMERGRLVDSYGREISLGNVIF-ILTAD 778 (1013)
Q Consensus 744 ~vq~~LL~~le~G~l~d~~g~~vd~~n~ii-I~TSN 778 (1013)
.+|..||++|++++++. .|....+.+.++ |+|-|
T Consensus 77 ktQsAlLeam~Er~Vt~-~g~~~~lp~pf~ViATqN 111 (131)
T PF07726_consen 77 KTQSALLEAMEERQVTI-DGQTYPLPDPFFVIATQN 111 (131)
T ss_dssp HHHHHHHHHHHHSEEEE-TTEEEE--SS-EEEEEE-
T ss_pred HHHHHHHHHHHcCeEEe-CCEEEECCCcEEEEEecC
Confidence 99999999999999985 567777777544 55655
No 153
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.87 E-value=1.1e-08 Score=116.36 Aligned_cols=124 Identities=17% Similarity=0.143 Sum_probs=80.1
Q ss_pred ccccc-cHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCC------
Q 001788 631 EKVWW-QQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRR------ 703 (1013)
Q Consensus 631 ~~ViG-Q~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~------ 703 (1013)
..|+| |+.+++.+...+...+.. . .+||+||+|+||+++|+.+|+.++..... -..-|..
T Consensus 5 ~~i~~~q~~~~~~L~~~~~~~~l~-------h-----a~Lf~G~~G~gk~~~a~~la~~l~c~~~~-~~~~cg~C~~c~~ 71 (329)
T PRK08058 5 EQLTALQPVVVKMLQNSIAKNRLS-------H-----AYLFEGAKGTGKKATALWLAKSLFCLERN-GVEPCGTCTNCKR 71 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCC-------c-----eEEEECCCCCCHHHHHHHHHHHHCCCCCC-CCCCCCcCHHHHH
Confidence 45677 999999988887533321 1 28999999999999999999999754210 0000100
Q ss_pred CCCCCcccc---------cccchhhhHHHHHHc----CCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCc
Q 001788 704 DHEEPEVRV---------RGKTALDKIGEAVKR----NPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGN 770 (1013)
Q Consensus 704 ~~~~~~~g~---------~G~~~~~~L~eal~~----~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n 770 (1013)
...+..|.+ .+.+....+.+.+.. .++.|++|||+|+++...+|.||+.||+-. .+
T Consensus 72 ~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp-----------~~ 140 (329)
T PRK08058 72 IDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPS-----------GG 140 (329)
T ss_pred HhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCC-----------CC
Confidence 000111111 122223334444443 345799999999999999999999999622 35
Q ss_pred eEEEEecC
Q 001788 771 VIFILTAD 778 (1013)
Q Consensus 771 ~iiI~TSN 778 (1013)
++||++|+
T Consensus 141 ~~~Il~t~ 148 (329)
T PRK08058 141 TTAILLTE 148 (329)
T ss_pred ceEEEEeC
Confidence 67888885
No 154
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.87 E-value=3.8e-08 Score=113.41 Aligned_cols=134 Identities=13% Similarity=0.120 Sum_probs=80.0
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCC------CCceeeeCCCCC
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGA------SPIMIPLGPRRD 704 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~------~~~~i~id~s~~ 704 (1013)
+.++|+++.++.|...+.....+..+ ..++++||+|+|||.+++.+.+.+... ...++.+||..+
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~---------~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRP---------SNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCC---------CcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 46899999999999998765543211 129999999999999999999877422 146788888654
Q ss_pred CCC---------------Ccccccccch---hhhHHHHHHc-CCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeE
Q 001788 705 HEE---------------PEVRVRGKTA---LDKIGEAVKR-NPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGRE 765 (1013)
Q Consensus 705 ~~~---------------~~~g~~G~~~---~~~L~eal~~-~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~ 765 (1013)
... ......|... ...+.+.+.. .+..||+|||+|.+....+..|..++.-.....
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~----- 160 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGD----- 160 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccC-----
Confidence 321 0000111111 1234444433 445689999999995333334444442111111
Q ss_pred eecCceEEEEecC
Q 001788 766 ISLGNVIFILTAD 778 (1013)
Q Consensus 766 vd~~n~iiI~TSN 778 (1013)
....+.++|+++|
T Consensus 161 ~~~~~v~lI~i~n 173 (365)
T TIGR02928 161 LDNAKVGVIGISN 173 (365)
T ss_pred CCCCeEEEEEEEC
Confidence 1123566788886
No 155
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.86 E-value=3.7e-09 Score=110.84 Aligned_cols=133 Identities=20% Similarity=0.263 Sum_probs=76.6
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCC-----
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDH----- 705 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~----- 705 (1013)
+.|+||+.++.++.-+.. |.. . +||.||+|+|||.+|+.|+..|..-.. --.+..+...
T Consensus 3 ~dI~GQe~aKrAL~iAAa----G~h------~-----lLl~GppGtGKTmlA~~l~~lLP~l~~-~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAA----GGH------H-----LLLIGPPGTGKTMLARRLPSLLPPLTE-EEALEVSKIYSVAGL 66 (206)
T ss_dssp CCSSSTHHHHHHHHHHHH----CC-------------EEEES-CCCTHHHHHHHHHHCS--CCE-ECCESS--S-TT---
T ss_pred hhhcCcHHHHHHHHHHHc----CCC------C-----eEEECCCCCCHHHHHHHHHHhCCCCch-HHHhhhccccccccC
Confidence 569999998888766654 311 1 999999999999999999988752210 0001111000
Q ss_pred --CC----Ccc-----------cccccchhhhHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCC-C-eEe
Q 001788 706 --EE----PEV-----------RVRGKTALDKIGEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSY-G-REI 766 (1013)
Q Consensus 706 --~~----~~~-----------g~~G~~~~~~L~eal~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~-g-~~v 766 (1013)
.. .+| +.+|... ....+.+...-++|+||||+-.+++.+.+.|++.|++|+++-.. | ...
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~-~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~ 145 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGR-PPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVT 145 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGG-GEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEE
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCc-CCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEE
Confidence 00 000 1111100 00011233344589999999999999999999999999887443 2 233
Q ss_pred ecCceEEEEecCCC
Q 001788 767 SLGNVIFILTADWL 780 (1013)
Q Consensus 767 d~~n~iiI~TSN~g 780 (1013)
.=.+..+|+|.|-.
T Consensus 146 ~Pa~f~lv~a~NPc 159 (206)
T PF01078_consen 146 YPARFLLVAAMNPC 159 (206)
T ss_dssp EB--EEEEEEE-S-
T ss_pred EecccEEEEEeccc
Confidence 33456789999853
No 156
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.5e-08 Score=106.51 Aligned_cols=126 Identities=17% Similarity=0.293 Sum_probs=84.0
Q ss_pred ccccHHHHHHHHHHHHHh--------hhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCC
Q 001788 633 VWWQQEAASAVATTVTQC--------KLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRD 704 (1013)
Q Consensus 633 ViGQ~~ai~~I~~ai~~~--------~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~ 704 (1013)
|-|-+..|+.|...|.-. ..|+.. |.| +|++||||+|||.+|+++|.... ..||++..++.
T Consensus 149 iGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQ--PKG------vlLygppgtGktLlaraVahht~---c~firvsgsel 217 (404)
T KOG0728|consen 149 IGGLDKQIKEIKEVIELPVKHPELFEALGIAQ--PKG------VLLYGPPGTGKTLLARAVAHHTD---CTFIRVSGSEL 217 (404)
T ss_pred hccHHHHHHHHHHHHhccccCHHHHHhcCCCC--Ccc------eEEecCCCCchhHHHHHHHhhcc---eEEEEechHHH
Confidence 455666666666666422 123333 222 89999999999999999998654 78999998875
Q ss_pred CCCCcccccccch--hhhHHHHHHcCCCEEEEEeCCCCC-----------CHHHHHHHHHHHHcceEecCCCeEeecCce
Q 001788 705 HEEPEVRVRGKTA--LDKIGEAVKRNPFSVILLEDIDEA-----------DMVVRGNIKRAMERGRLVDSYGREISLGNV 771 (1013)
Q Consensus 705 ~~~~~~g~~G~~~--~~~L~eal~~~p~~VV~lDEIdka-----------~~~vq~~LL~~le~G~l~d~~g~~vd~~n~ 771 (1013)
... |.|... ...|+-..+.+..+|||.||||.. +.++|...|+++.. + |+. -...|.
T Consensus 218 vqk----~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnq--l-dgf---eatkni 287 (404)
T KOG0728|consen 218 VQK----YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQ--L-DGF---EATKNI 287 (404)
T ss_pred HHH----HhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHh--c-ccc---ccccce
Confidence 433 555431 233444456666699999999964 67899999998852 1 111 112455
Q ss_pred EEEEecCC
Q 001788 772 IFILTADW 779 (1013)
Q Consensus 772 iiI~TSN~ 779 (1013)
-+||+||.
T Consensus 288 kvimatnr 295 (404)
T KOG0728|consen 288 KVIMATNR 295 (404)
T ss_pred EEEEeccc
Confidence 58999983
No 157
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.84 E-value=3.8e-08 Score=121.77 Aligned_cols=155 Identities=11% Similarity=0.064 Sum_probs=98.2
Q ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHhhhhcCCCC--C------CCCCCCceEEEeccCCCccchHHHHHHHHhcC
Q 001788 620 DSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLGNGKRR--G------AGSKGDMWLLFMGPDRVGKKKMASALSELVSG 691 (1013)
Q Consensus 620 e~l~~L~~~L~~~ViGQ~~ai~~I~~ai~~~~~g~~~~r--~------~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~ 691 (1013)
+-+..|.+.+-..|+|++.+...|.-++.-......... | ..-+.+.++||.|+|||||+.+|+.+++...+
T Consensus 439 ~i~~~L~~SiaP~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR 518 (915)
T PTZ00111 439 MIYRILLDSFAPSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPR 518 (915)
T ss_pred HHHHHHHHHhCCeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCc
Confidence 334566677777899999988887666642211000000 0 11256788999999999999999999997654
Q ss_pred CC----CceeeeCCCCCCCCCcccccccchhhh--HHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCC-Ce
Q 001788 692 AS----PIMIPLGPRRDHEEPEVRVRGKTALDK--IGEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSY-GR 764 (1013)
Q Consensus 692 ~~----~~~i~id~s~~~~~~~~g~~G~~~~~~--L~eal~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~-g~ 764 (1013)
.. .++..+++..... +.+...+.. -.+++-....++++||||+++++..|..|+++|+++.++-.+ |-
T Consensus 519 ~~ytsG~~~s~vgLTa~~~-----~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi 593 (915)
T PTZ00111 519 SIYTSGKSSSSVGLTASIK-----FNESDNGRAMIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGI 593 (915)
T ss_pred cccCCCCCCccccccchhh-----hcccccCcccccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCc
Confidence 32 3555555543211 000000110 012333445579999999999999999999999999986432 32
Q ss_pred Eee-cCceEEEEecCC
Q 001788 765 EIS-LGNVIFILTADW 779 (1013)
Q Consensus 765 ~vd-~~n~iiI~TSN~ 779 (1013)
... -.++.||+|+|-
T Consensus 594 ~~tL~ar~rVIAAaNP 609 (915)
T PTZ00111 594 VATLKAETAILASCNP 609 (915)
T ss_pred ceecCCCeEEEEEcCC
Confidence 221 245678999984
No 158
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=5.2e-08 Score=108.47 Aligned_cols=109 Identities=20% Similarity=0.252 Sum_probs=81.1
Q ss_pred cccccHHHHHHHHHHHHHh------hhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCC
Q 001788 632 KVWWQQEAASAVATTVTQC------KLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDH 705 (1013)
Q Consensus 632 ~ViGQ~~ai~~I~~ai~~~------~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~ 705 (1013)
.|.|-.+|++-|..++... ..|+ ++|.-. +|+.||||||||.||+++|.... ..|+.+..+...
T Consensus 213 DIagl~~AK~lL~EAVvlPi~mPe~F~Gi--rrPWkg-----vLm~GPPGTGKTlLAKAvATEc~---tTFFNVSsstlt 282 (491)
T KOG0738|consen 213 DIAGLHEAKKLLKEAVVLPIWMPEFFKGI--RRPWKG-----VLMVGPPGTGKTLLAKAVATECG---TTFFNVSSSTLT 282 (491)
T ss_pred hhcchHHHHHHHHHHHhhhhhhHHHHhhc--ccccce-----eeeeCCCCCcHHHHHHHHHHhhc---CeEEEechhhhh
Confidence 4788888988888887543 2232 334323 99999999999999999999875 667777766433
Q ss_pred CCCcccccccch--hhhHHHHHHcCCCEEEEEeCCCCC------------CHHHHHHHHHHHH
Q 001788 706 EEPEVRVRGKTA--LDKIGEAVKRNPFSVILLEDIDEA------------DMVVRGNIKRAME 754 (1013)
Q Consensus 706 ~~~~~g~~G~~~--~~~L~eal~~~p~~VV~lDEIdka------------~~~vq~~LL~~le 754 (1013)
. .|+|..+ ...|++..+..-.++|||||||-+ ...+-+-||..|+
T Consensus 283 S----KwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmD 341 (491)
T KOG0738|consen 283 S----KWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMD 341 (491)
T ss_pred h----hhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhh
Confidence 3 3787754 456888777776799999999854 4568888888885
No 159
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.83 E-value=2.7e-08 Score=126.06 Aligned_cols=120 Identities=18% Similarity=0.276 Sum_probs=84.9
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCC-------CCceeeeCCCC
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGA-------SPIMIPLGPRR 703 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~-------~~~~i~id~s~ 703 (1013)
+.|+|+++.++.+...+.+.. ..+ ++|+||||||||.+|+.||..+... ...++.+|++.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~--------~~n-----~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~ 245 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT--------KNN-----PILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGL 245 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc--------cCC-----eEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHH
Confidence 458999999999888875321 112 8999999999999999999987533 35677888764
Q ss_pred CCCCCcccccccc--hhhhHHHHHHcCCCEEEEEeCCCCCC--------HHHHHHHHHHHHcceEecCCCeEeecCceEE
Q 001788 704 DHEEPEVRVRGKT--ALDKIGEAVKRNPFSVILLEDIDEAD--------MVVRGNIKRAMERGRLVDSYGREISLGNVIF 773 (1013)
Q Consensus 704 ~~~~~~~g~~G~~--~~~~L~eal~~~p~~VV~lDEIdka~--------~~vq~~LL~~le~G~l~d~~g~~vd~~n~ii 773 (1013)
...+ ..|.|.- ....+.+.+......|+|||||+.+. .++.+.|..++..|.++ +
T Consensus 246 l~ag--~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~-------------~ 310 (821)
T CHL00095 246 LLAG--TKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQ-------------C 310 (821)
T ss_pred Hhcc--CCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcE-------------E
Confidence 3222 2355532 12234444455666899999998543 25788999999988776 7
Q ss_pred EEecC
Q 001788 774 ILTAD 778 (1013)
Q Consensus 774 I~TSN 778 (1013)
|.+||
T Consensus 311 IgaTt 315 (821)
T CHL00095 311 IGATT 315 (821)
T ss_pred EEeCC
Confidence 88886
No 160
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.82 E-value=2.7e-08 Score=123.65 Aligned_cols=123 Identities=12% Similarity=0.198 Sum_probs=81.3
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCC--
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEP-- 708 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~-- 708 (1013)
+.++|.+..+..+...+.+.+. .+ ++|+||||||||.+|+.||..+.....|+.-.++..|....
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~--------~n-----~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~ 252 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRK--------NN-----PLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS 252 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCC--------CC-----eEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHH
Confidence 3589999999999987765211 12 79999999999999999998775444444333333222110
Q ss_pred ---cccccccch--hhhHHHHHHcCCCEEEEEeCCCCC---------CHHHHHHHHHHHHcceEecCCCeEeecCceEEE
Q 001788 709 ---EVRVRGKTA--LDKIGEAVKRNPFSVILLEDIDEA---------DMVVRGNIKRAMERGRLVDSYGREISLGNVIFI 774 (1013)
Q Consensus 709 ---~~g~~G~~~--~~~L~eal~~~p~~VV~lDEIdka---------~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI 774 (1013)
...|.|.-+ ...+.+.+.+....|||||||+.+ ..++.+.|..++..|.+. +|
T Consensus 253 llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~-------------vI 319 (758)
T PRK11034 253 LLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIR-------------VI 319 (758)
T ss_pred HhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeE-------------EE
Confidence 012344211 123445555666689999999965 346777888898877765 78
Q ss_pred EecCC
Q 001788 775 LTADW 779 (1013)
Q Consensus 775 ~TSN~ 779 (1013)
.+||.
T Consensus 320 gATt~ 324 (758)
T PRK11034 320 GSTTY 324 (758)
T ss_pred ecCCh
Confidence 88873
No 161
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.82 E-value=1.9e-08 Score=117.84 Aligned_cols=171 Identities=15% Similarity=0.207 Sum_probs=110.9
Q ss_pred EEEeccCCCccchHHHHHHHHhcCC--CCceeeeCCCCCCCCCcccccccchhhhHHHHHHcCCCEEEEEeCCCCCCH--
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGA--SPIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKRNPFSVILLEDIDEADM-- 743 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~--~~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~~p~~VV~lDEIdka~~-- 743 (1013)
++|+||+|+|||.|++++++.+... ...++.+++.++........ .......+.+.++. ..+|+||||+.+..
T Consensus 139 l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~dlLiiDDi~~l~~~~ 215 (405)
T TIGR00362 139 LFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNAL-RNNKMEEFKEKYRS--VDLLLIDDIQFLAGKE 215 (405)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHH-HcCCHHHHHHHHHh--CCEEEEehhhhhcCCH
Confidence 9999999999999999999988644 34566676654321100000 01112233333433 47999999998643
Q ss_pred HHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccc
Q 001788 744 VVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASW 823 (1013)
Q Consensus 744 ~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~ 823 (1013)
..|..|+.+++.-. . . +..+|+|||.....+.
T Consensus 216 ~~~~~l~~~~n~~~--~-~-------~~~iiits~~~p~~l~-------------------------------------- 247 (405)
T TIGR00362 216 RTQEEFFHTFNALH--E-N-------GKQIVLTSDRPPKELP-------------------------------------- 247 (405)
T ss_pred HHHHHHHHHHHHHH--H-C-------CCCEEEecCCCHHHHh--------------------------------------
Confidence 46777777775311 1 1 1226778864211100
Q ss_pred hhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhcc--ceec
Q 001788 824 LDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDS--AIVF 901 (1013)
Q Consensus 824 ~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~--iV~F 901 (1013)
.+.+.+.+|+.. +|.|
T Consensus 248 --------------------------------------------------------------~l~~~l~SRl~~g~~v~i 265 (405)
T TIGR00362 248 --------------------------------------------------------------GLEERLRSRFEWGLVVDI 265 (405)
T ss_pred --------------------------------------------------------------hhhhhhhhhccCCeEEEe
Confidence 234467778853 7999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHHHhCCCCChHHHHHHHHHHH
Q 001788 902 KPVDFGRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLVGGVWLGRTGLEDWTEKVL 960 (1013)
Q Consensus 902 ~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~~~~~~gar~l~~~ie~~l 960 (1013)
.|++.++...|+...+.. ..+.++++++++|+...-...|.|+..|.++.
T Consensus 266 ~~pd~~~r~~il~~~~~~---------~~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~ 315 (405)
T TIGR00362 266 EPPDLETRLAILQKKAEE---------EGLELPDEVLEFIAKNIRSNVRELEGALNRLL 315 (405)
T ss_pred CCCCHHHHHHHHHHHHHH---------cCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 999999999998876543 24678999999999875555588888777654
No 162
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.82 E-value=5.9e-08 Score=109.89 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=44.8
Q ss_pred cccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcC
Q 001788 632 KVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSG 691 (1013)
Q Consensus 632 ~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~ 691 (1013)
+++|+++++..++..+.....|...++. .++|.||||+|||++|++|++.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~-------il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQ-------ILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCc-------EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 6999999999999999888776543322 2899999999999999999999854
No 163
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=4.2e-08 Score=118.94 Aligned_cols=127 Identities=20% Similarity=0.235 Sum_probs=86.8
Q ss_pred ccccccHHHHHHHHHHHHHhhh-----hcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCC
Q 001788 631 EKVWWQQEAASAVATTVTQCKL-----GNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDH 705 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~-----g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~ 705 (1013)
+.|-|.++|..+|-..+.-.+. .++-.-|.| +||+||||||||.||+++|..-. .||+.+..|+|.
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkG------vLL~GPPGTGKTLLAKAiAGEAg---VPF~svSGSEFv 381 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKG------VLLVGPPGTGKTLLAKAIAGEAG---VPFFSVSGSEFV 381 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCc------eEEECCCCCcHHHHHHHHhcccC---CceeeechHHHH
Confidence 5689999999888777653322 122222323 89999999999999999998665 999999999987
Q ss_pred CCCcccccccc--hhhhHHHHHHcCCCEEEEEeCCCCCCH---------------HHHHHHHHHHHcceEecCCCeEeec
Q 001788 706 EEPEVRVRGKT--ALDKIGEAVKRNPFSVILLEDIDEADM---------------VVRGNIKRAMERGRLVDSYGREISL 768 (1013)
Q Consensus 706 ~~~~~g~~G~~--~~~~L~eal~~~p~~VV~lDEIdka~~---------------~vq~~LL~~le~G~l~d~~g~~vd~ 768 (1013)
+. ++|.. -...|+...+.+-.+|||+||||.... ..+|.||-=|| |..+ .
T Consensus 382 E~----~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emD-gf~~-------~- 448 (774)
T KOG0731|consen 382 EM----FVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMD-GFET-------S- 448 (774)
T ss_pred HH----hcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhc-CCcC-------C-
Confidence 64 55432 234566666666669999999985432 24444444442 3322 1
Q ss_pred CceEEEEecCC
Q 001788 769 GNVIFILTADW 779 (1013)
Q Consensus 769 ~n~iiI~TSN~ 779 (1013)
.++||+.+||.
T Consensus 449 ~~vi~~a~tnr 459 (774)
T KOG0731|consen 449 KGVIVLAATNR 459 (774)
T ss_pred CcEEEEeccCC
Confidence 56788888884
No 164
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.5e-08 Score=107.20 Aligned_cols=128 Identities=20% Similarity=0.266 Sum_probs=90.9
Q ss_pred ccccccHHHHHHHHHHHHHh--------hhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCC
Q 001788 631 EKVWWQQEAASAVATTVTQC--------KLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPR 702 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~--------~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s 702 (1013)
..|-|-.+.|+.+...+... ..|+.|.++ +|++||||+|||.+||++|+. ...-||++=.|
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkg--------vllygppgtgktl~aravanr---tdacfirvigs 245 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKG--------VLLYGPPGTGKTLCARAVANR---TDACFIRVIGS 245 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCc--------eEEeCCCCCchhHHHHHHhcc---cCceEEeehhH
Confidence 34677777777777766432 334544433 999999999999999999984 45788988877
Q ss_pred CCCCCCcccccccch--hhhHHHHHHcCCCEEEEEeCCCCC-----------CHHHHHHHHHHHHcceEecCCCeEeecC
Q 001788 703 RDHEEPEVRVRGKTA--LDKIGEAVKRNPFSVILLEDIDEA-----------DMVVRGNIKRAMERGRLVDSYGREISLG 769 (1013)
Q Consensus 703 ~~~~~~~~g~~G~~~--~~~L~eal~~~p~~VV~lDEIdka-----------~~~vq~~LL~~le~G~l~d~~g~~vd~~ 769 (1013)
+.... |+|... ...|++..+.+..++|||||||-. +.++|...|+++..=.=.|..|
T Consensus 246 elvqk----yvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprg------ 315 (435)
T KOG0729|consen 246 ELVQK----YVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRG------ 315 (435)
T ss_pred HHHHH----HhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCC------
Confidence 65443 666532 345777777888899999999853 5689999999986322223333
Q ss_pred ceEEEEecCC
Q 001788 770 NVIFILTADW 779 (1013)
Q Consensus 770 n~iiI~TSN~ 779 (1013)
|.-++|+||.
T Consensus 316 nikvlmatnr 325 (435)
T KOG0729|consen 316 NIKVLMATNR 325 (435)
T ss_pred CeEEEeecCC
Confidence 4458888874
No 165
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.79 E-value=1e-07 Score=119.67 Aligned_cols=123 Identities=22% Similarity=0.268 Sum_probs=81.0
Q ss_pred cccccHHHHHHHHHHHHHhh--------hhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCC
Q 001788 632 KVWWQQEAASAVATTVTQCK--------LGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRR 703 (1013)
Q Consensus 632 ~ViGQ~~ai~~I~~ai~~~~--------~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~ 703 (1013)
.|.|.++++..|...+.... .|..+.+ -+||+||+|||||++|++||+.+. .+|+.+++++
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~--------giLL~GppGtGKT~laraia~~~~---~~~i~i~~~~ 247 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPK--------GVLLYGPPGTGKTLLAKAVANEAG---AYFISINGPE 247 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCc--------eEEEECCCCCChHHHHHHHHHHhC---CeEEEEecHH
Confidence 36799988888887775321 1222211 289999999999999999999885 5788888765
Q ss_pred CCCCCcccccccch--hhhHHHHHHcCCCEEEEEeCCCCCC-----------HHHHHHHHHHHHcceEecCCCeEeecCc
Q 001788 704 DHEEPEVRVRGKTA--LDKIGEAVKRNPFSVILLEDIDEAD-----------MVVRGNIKRAMERGRLVDSYGREISLGN 770 (1013)
Q Consensus 704 ~~~~~~~g~~G~~~--~~~L~eal~~~p~~VV~lDEIdka~-----------~~vq~~LL~~le~G~l~d~~g~~vd~~n 770 (1013)
.... |.|... ...+++.......+||||||||.+. ..+++.|+..|+.- .. -.+
T Consensus 248 i~~~----~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l--~~-------~~~ 314 (733)
T TIGR01243 248 IMSK----YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGL--KG-------RGR 314 (733)
T ss_pred Hhcc----cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhcc--cc-------CCC
Confidence 4322 444322 2334444444445899999998763 35778888888531 11 124
Q ss_pred eEEEEecC
Q 001788 771 VIFILTAD 778 (1013)
Q Consensus 771 ~iiI~TSN 778 (1013)
.++|.+||
T Consensus 315 vivI~atn 322 (733)
T TIGR01243 315 VIVIGATN 322 (733)
T ss_pred EEEEeecC
Confidence 56777886
No 166
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.79 E-value=1.4e-08 Score=98.17 Aligned_cols=108 Identities=17% Similarity=0.135 Sum_probs=76.0
Q ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCC--CCceee
Q 001788 621 SFKRLLKSLMEKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGA--SPIMIP 698 (1013)
Q Consensus 621 ~l~~L~~~L~~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~--~~~~i~ 698 (1013)
++..|++.|.++++||.-|++.|..+|........+++|+ ++.|.|||||||+.+++.||+.+|.+ ..++|+
T Consensus 15 ~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~~~p~KpL------VlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~ 88 (127)
T PF06309_consen 15 NITGLEKDLQRNLFGQHLAVEVVVNAIKGHLANPNPRKPL------VLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVH 88 (127)
T ss_pred CHHHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCCCCE------EEEeecCCCCcHHHHHHHHHHHHHhcccCCCcee
Confidence 4567899999999999999999999999887665565554 58999999999999999999999965 445554
Q ss_pred eCCCC--CCCCC-cccccccchhhhHHHHHHcCCCEEEEE
Q 001788 699 LGPRR--DHEEP-EVRVRGKTALDKIGEAVKRNPFSVILL 735 (1013)
Q Consensus 699 id~s~--~~~~~-~~g~~G~~~~~~L~eal~~~p~~VV~l 735 (1013)
.=.+. |.... ...|. ..-...+.+.+...|.++++|
T Consensus 89 ~f~~~~hFP~~~~v~~Yk-~~L~~~I~~~v~~C~rslFIF 127 (127)
T PF06309_consen 89 QFIATHHFPHNSNVDEYK-EQLKSWIRGNVSRCPRSLFIF 127 (127)
T ss_pred eecccccCCCchHHHHHH-HHHHHHHHHHHHhCCcCeeeC
Confidence 33322 11110 00111 112345666777788887664
No 167
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.79 E-value=6.4e-08 Score=118.25 Aligned_cols=53 Identities=28% Similarity=0.466 Sum_probs=43.7
Q ss_pred HHHHHhccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCC
Q 001788 625 LLKSLMEKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGA 692 (1013)
Q Consensus 625 L~~~L~~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~ 692 (1013)
+.+.|.+.|+||++++..+..++...+ . ++|+||||||||++|+++++.+...
T Consensus 12 ~~~~~~~~viG~~~a~~~l~~a~~~~~----------~-----~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 12 VPERLIDQVIGQEEAVEIIKKAAKQKR----------N-----VLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred cchhhHhhccCHHHHHHHHHHHHHcCC----------C-----EEEECCCCCCHHHHHHHHHHHcCch
Confidence 344678899999999998888776321 1 8999999999999999999999754
No 168
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.79 E-value=1.4e-07 Score=110.06 Aligned_cols=130 Identities=19% Similarity=0.181 Sum_probs=81.7
Q ss_pred hccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCC--CCceeeeCCCCCCC-
Q 001788 630 MEKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGA--SPIMIPLGPRRDHE- 706 (1013)
Q Consensus 630 ~~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~--~~~~i~id~s~~~~- 706 (1013)
.+.++|.++.++.+...+.....+..+ . .++++||+|+|||++++.+++.+... ...++.+++..+..
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~----~-----~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~ 99 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRP----L-----NVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTR 99 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCC----C-----eEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCH
Confidence 456899999999999988765433221 1 28999999999999999999887543 35678888875432
Q ss_pred ------------CCcccccccc---hhhhHHHHHHc-CCCEEEEEeCCCCCC----HHHHHHHHHHHHcceEecCCCeEe
Q 001788 707 ------------EPEVRVRGKT---ALDKIGEAVKR-NPFSVILLEDIDEAD----MVVRGNIKRAMERGRLVDSYGREI 766 (1013)
Q Consensus 707 ------------~~~~g~~G~~---~~~~L~eal~~-~p~~VV~lDEIdka~----~~vq~~LL~~le~G~l~d~~g~~v 766 (1013)
+.+....|.. ....+.+.+.. ....||+|||+|.+. .+....|++.++.- .+
T Consensus 100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-----~~--- 171 (394)
T PRK00411 100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-----PG--- 171 (394)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-----CC---
Confidence 0000112211 12334444443 334689999999885 34555555555421 11
Q ss_pred ecCceEEEEecC
Q 001788 767 SLGNVIFILTAD 778 (1013)
Q Consensus 767 d~~n~iiI~TSN 778 (1013)
.+..+|+++|
T Consensus 172 --~~v~vI~i~~ 181 (394)
T PRK00411 172 --ARIGVIGISS 181 (394)
T ss_pred --CeEEEEEEEC
Confidence 2455788876
No 169
>PRK04132 replication factor C small subunit; Provisional
Probab=98.78 E-value=6.5e-08 Score=120.41 Aligned_cols=159 Identities=17% Similarity=0.240 Sum_probs=116.3
Q ss_pred EEEec--cCCCccchHHHHHHHHhcCC--CCceeeeCCCCCCCCCcccccccchhhhHHHH-HHcC-----CCEEEEEeC
Q 001788 668 LLFMG--PDRVGKKKMASALSELVSGA--SPIMIPLGPRRDHEEPEVRVRGKTALDKIGEA-VKRN-----PFSVILLED 737 (1013)
Q Consensus 668 lLf~G--p~GvGKT~lAr~LA~~l~~~--~~~~i~id~s~~~~~~~~g~~G~~~~~~L~ea-l~~~-----p~~VV~lDE 737 (1013)
-++.| |.+.|||++|++||+.+|+. ...++.+|+++ ..|.+....+.+. .... ++.||||||
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd--------~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDE 638 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASD--------ERGINVIREKVKEFARTKPIGGASFKIIFLDE 638 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCC--------cccHHHHHHHHHHHHhcCCcCCCCCEEEEEEC
Confidence 36678 99999999999999999875 45799999986 3344444443332 2222 357999999
Q ss_pred CCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccc
Q 001788 738 IDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTT 817 (1013)
Q Consensus 738 Idka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~ 817 (1013)
+|+++...|+.|++.||+-. .+++||++||-..
T Consensus 639 aD~Lt~~AQnALLk~lEep~-----------~~~~FILi~N~~~------------------------------------ 671 (846)
T PRK04132 639 ADALTQDAQQALRRTMEMFS-----------SNVRFILSCNYSS------------------------------------ 671 (846)
T ss_pred cccCCHHHHHHHHHHhhCCC-----------CCeEEEEEeCChh------------------------------------
Confidence 99999999999999998511 3456999987210
Q ss_pred cccccchhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhcc
Q 001788 818 KRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDS 897 (1013)
Q Consensus 818 krk~~~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~ 897 (1013)
...+.+.+|+ .
T Consensus 672 --------------------------------------------------------------------kIi~tIrSRC-~ 682 (846)
T PRK04132 672 --------------------------------------------------------------------KIIEPIQSRC-A 682 (846)
T ss_pred --------------------------------------------------------------------hCchHHhhhc-e
Confidence 2345788998 8
Q ss_pred ceecCCCChhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHHHhCCCCChHHHHHHHHHH
Q 001788 898 AIVFKPVDFGRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLVGGVWLGRTGLEDWTEKV 959 (1013)
Q Consensus 898 iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~~~~~~gar~l~~~ie~~ 959 (1013)
++.|+|++.+++...+.....+ -.+.+++++++.|+..+-...|..-+.++..
T Consensus 683 ~i~F~~ls~~~i~~~L~~I~~~---------Egi~i~~e~L~~Ia~~s~GDlR~AIn~Lq~~ 735 (846)
T PRK04132 683 IFRFRPLRDEDIAKRLRYIAEN---------EGLELTEEGLQAILYIAEGDMRRAINILQAA 735 (846)
T ss_pred EEeCCCCCHHHHHHHHHHHHHh---------cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999888776554331 1356789999999988766567555666643
No 170
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.78 E-value=4.2e-08 Score=110.83 Aligned_cols=121 Identities=21% Similarity=0.264 Sum_probs=83.6
Q ss_pred cccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCC------------------
Q 001788 632 KVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGAS------------------ 693 (1013)
Q Consensus 632 ~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~------------------ 693 (1013)
.++|+++++..+...+...... | .+ +||+||+|+|||++|.+||+.+++..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~-----~-ha-----lL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRL-----P-HA-----LLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCC-----C-ce-----eeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 4677887777777766533211 1 02 99999999999999999999999764
Q ss_pred ---CceeeeCCCCCCCCCcccccccchhhhHHHHHHc----CCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEe
Q 001788 694 ---PIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKR----NPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREI 766 (1013)
Q Consensus 694 ---~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~----~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~v 766 (1013)
..++.++.+..... -+..+....+.+.... .++.||+|||+|+++.+.++.|++.+|+-.
T Consensus 71 ~~~~d~lel~~s~~~~~----~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~--------- 137 (325)
T COG0470 71 GNHPDFLELNPSDLRKI----DIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPP--------- 137 (325)
T ss_pred cCCCceEEecccccCCC----cchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCC---------
Confidence 34455554432110 0122233344444333 346899999999999999999999998532
Q ss_pred ecCceEEEEecC
Q 001788 767 SLGNVIFILTAD 778 (1013)
Q Consensus 767 d~~n~iiI~TSN 778 (1013)
.++.||++||
T Consensus 138 --~~~~~il~~n 147 (325)
T COG0470 138 --KNTRFILITN 147 (325)
T ss_pred --CCeEEEEEcC
Confidence 5677999998
No 171
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.78 E-value=1.9e-08 Score=107.99 Aligned_cols=172 Identities=19% Similarity=0.245 Sum_probs=107.1
Q ss_pred EEEeccCCCccchHHHHHHHHhcC--CCCceeeeCCCCCCCCCcccccccchhhhHHHHHHcCCCEEEEEeCCCCCCH--
Q 001788 668 LLFMGPDRVGKKKMASALSELVSG--ASPIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKRNPFSVILLEDIDEADM-- 743 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~--~~~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~~p~~VV~lDEIdka~~-- 743 (1013)
++++||+|+|||.|.+++++.+.. ....++.+++.++......... ......+.+.+ ....+|+||+|+.+..
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~-~~~~~~~~~~~--~~~DlL~iDDi~~l~~~~ 113 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALR-DGEIEEFKDRL--RSADLLIIDDIQFLAGKQ 113 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHH-TTSHHHHHHHH--CTSSEEEEETGGGGTTHH
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHH-cccchhhhhhh--hcCCEEEEecchhhcCch
Confidence 899999999999999999988753 2345666665443111000000 01112222333 3457999999999864
Q ss_pred HHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccc
Q 001788 744 VVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASW 823 (1013)
Q Consensus 744 ~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~ 823 (1013)
..|..|+.+++.-. .. +..+|+|++.....+
T Consensus 114 ~~q~~lf~l~n~~~--~~--------~k~li~ts~~~P~~l--------------------------------------- 144 (219)
T PF00308_consen 114 RTQEELFHLFNRLI--ES--------GKQLILTSDRPPSEL--------------------------------------- 144 (219)
T ss_dssp HHHHHHHHHHHHHH--HT--------TSEEEEEESS-TTTT---------------------------------------
T ss_pred HHHHHHHHHHHHHH--hh--------CCeEEEEeCCCCccc---------------------------------------
Confidence 46888888886422 11 123788886422100
Q ss_pred hhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhcc--ceec
Q 001788 824 LDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDS--AIVF 901 (1013)
Q Consensus 824 ~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid~--iV~F 901 (1013)
..+.++|.+|+.. ++..
T Consensus 145 -------------------------------------------------------------~~~~~~L~SRl~~Gl~~~l 163 (219)
T PF00308_consen 145 -------------------------------------------------------------SGLLPDLRSRLSWGLVVEL 163 (219)
T ss_dssp -------------------------------------------------------------TTS-HHHHHHHHCSEEEEE
T ss_pred -------------------------------------------------------------cccChhhhhhHhhcchhhc
Confidence 0467789999965 7888
Q ss_pred CCCChhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHHHhCCCCChHHHHHHHHHHHh
Q 001788 902 KPVDFGRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLVGGVWLGRTGLEDWTEKVLV 961 (1013)
Q Consensus 902 ~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~~~~~~gar~l~~~ie~~l~ 961 (1013)
.|++.++..+|+...... ..+.+++++++||+...-..-|.|+..|.++..
T Consensus 164 ~~pd~~~r~~il~~~a~~---------~~~~l~~~v~~~l~~~~~~~~r~L~~~l~~l~~ 214 (219)
T PF00308_consen 164 QPPDDEDRRRILQKKAKE---------RGIELPEEVIEYLARRFRRDVRELEGALNRLDA 214 (219)
T ss_dssp ----HHHHHHHHHHHHHH---------TT--S-HHHHHHHHHHTTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH---------hCCCCcHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 899999999998776542 246699999999999865566899988887643
No 172
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.77 E-value=4e-08 Score=116.69 Aligned_cols=171 Identities=15% Similarity=0.220 Sum_probs=111.2
Q ss_pred EEEeccCCCccchHHHHHHHHhcCC--CCceeeeCCCCCCCCCcccccccchhhhHHHHHHcCCCEEEEEeCCCCCC--H
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGA--SPIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKRNPFSVILLEDIDEAD--M 743 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~--~~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~~p~~VV~lDEIdka~--~ 743 (1013)
++|+||+|+|||.|++++++.+... ...++.+++.++.......+ .......+.+.++ ...+|+||||+.+. .
T Consensus 151 l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 151 LFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNAL-RNNTMEEFKEKYR--SVDVLLIDDIQFLAGKE 227 (450)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHH-HcCcHHHHHHHHh--cCCEEEEehhhhhcCCH
Confidence 9999999999999999999998644 34456666654321100000 0011122333333 24799999999864 3
Q ss_pred HHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccc
Q 001788 744 VVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASW 823 (1013)
Q Consensus 744 ~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~ 823 (1013)
..|..|+.+++.-. . .| ..+|+|||.....+
T Consensus 228 ~~~~~l~~~~n~l~-~--~~-------~~iiits~~~p~~l--------------------------------------- 258 (450)
T PRK00149 228 RTQEEFFHTFNALH-E--AG-------KQIVLTSDRPPKEL--------------------------------------- 258 (450)
T ss_pred HHHHHHHHHHHHHH-H--CC-------CcEEEECCCCHHHH---------------------------------------
Confidence 45667777664321 1 11 12677776421100
Q ss_pred hhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhc--cceec
Q 001788 824 LDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVD--SAIVF 901 (1013)
Q Consensus 824 ~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid--~iV~F 901 (1013)
..+.+.+.+|+. .++.|
T Consensus 259 -------------------------------------------------------------~~l~~~l~SRl~~gl~v~i 277 (450)
T PRK00149 259 -------------------------------------------------------------PGLEERLRSRFEWGLTVDI 277 (450)
T ss_pred -------------------------------------------------------------HHHHHHHHhHhcCCeeEEe
Confidence 024567888885 48999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHHHhCCCCChHHHHHHHHHHH
Q 001788 902 KPVDFGRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLVGGVWLGRTGLEDWTEKVL 960 (1013)
Q Consensus 902 ~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~~~~~~gar~l~~~ie~~l 960 (1013)
.|++.++...|++..+.. ..+.++++++++|+...-...|.|+..|.++.
T Consensus 278 ~~pd~~~r~~il~~~~~~---------~~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~ 327 (450)
T PRK00149 278 EPPDLETRIAILKKKAEE---------EGIDLPDEVLEFIAKNITSNVRELEGALNRLI 327 (450)
T ss_pred cCCCHHHHHHHHHHHHHH---------cCCCCCHHHHHHHHcCcCCCHHHHHHHHHHHH
Confidence 999999999998876542 24689999999999987666688887777654
No 173
>PRK06620 hypothetical protein; Validated
Probab=98.76 E-value=1.2e-07 Score=101.48 Aligned_cols=62 Identities=16% Similarity=0.165 Sum_probs=50.3
Q ss_pred hhHHhhhcc--ceecCCCChhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHHHhCCCCChHHHHHHHHHH
Q 001788 889 QDLLNSVDS--AIVFKPVDFGRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLVGGVWLGRTGLEDWTEKV 959 (1013)
Q Consensus 889 pefl~Rid~--iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~~~~~~gar~l~~~ie~~ 959 (1013)
|+|.+|+.. ++.++|++.+++..++.+.... ..+.+++++++||+...-...|.+.+.++.+
T Consensus 130 ~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~---------~~l~l~~ev~~~L~~~~~~d~r~l~~~l~~l 193 (214)
T PRK06620 130 PDLSSRIKSVLSILLNSPDDELIKILIFKHFSI---------SSVTISRQIIDFLLVNLPREYSKIIEILENI 193 (214)
T ss_pred HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH---------cCCCCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 689999942 7999999999988887765442 2478999999999998766669999999874
No 174
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.76 E-value=6.7e-08 Score=94.38 Aligned_cols=127 Identities=20% Similarity=0.200 Sum_probs=80.2
Q ss_pred cccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcc-cc
Q 001788 634 WWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEV-RV 712 (1013)
Q Consensus 634 iGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~-g~ 712 (1013)
+|++.++..+...+... . ..+++++||+|+|||++++.+++.+......++.+++..+...... ..
T Consensus 1 ~~~~~~~~~i~~~~~~~-----~--------~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 67 (151)
T cd00009 1 VGQEEAIEALREALELP-----P--------PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAEL 67 (151)
T ss_pred CchHHHHHHHHHHHhCC-----C--------CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHH
Confidence 36677777766665421 1 1139999999999999999999998655677888887754321100 00
Q ss_pred cccchhhhHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecC
Q 001788 713 RGKTALDKIGEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778 (1013)
Q Consensus 713 ~G~~~~~~L~eal~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN 778 (1013)
.+.................+|+|||++.+.+..+..+++.++...... ....++.+|+++|
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~ii~~~~ 128 (151)
T cd00009 68 FGHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-----IDRENVRVIGATN 128 (151)
T ss_pred hhhhhHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCcee-----ccCCCeEEEEecC
Confidence 000000011112223445899999999998888899999997653321 1224566888886
No 175
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.76 E-value=5.6e-08 Score=123.63 Aligned_cols=121 Identities=16% Similarity=0.249 Sum_probs=80.8
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCC-------CCceeeeCCCC
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGA-------SPIMIPLGPRR 703 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~-------~~~~i~id~s~ 703 (1013)
+.|+||++.+..+...+.+.. ..+ ++|+||||||||.+++.||+.+... ...++.+|++.
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~--------~~n-----~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~ 239 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT--------KNN-----PVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGA 239 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC--------CCc-----eEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHH
Confidence 358999998888877774321 112 7899999999999999999987542 34566676654
Q ss_pred CCCCCcccccccch--hhhHHHHHHc-CCCEEEEEeCCCCCC--------HHHHHHHHHHHHcceEecCCCeEeecCceE
Q 001788 704 DHEEPEVRVRGKTA--LDKIGEAVKR-NPFSVILLEDIDEAD--------MVVRGNIKRAMERGRLVDSYGREISLGNVI 772 (1013)
Q Consensus 704 ~~~~~~~g~~G~~~--~~~L~eal~~-~p~~VV~lDEIdka~--------~~vq~~LL~~le~G~l~d~~g~~vd~~n~i 772 (1013)
...+ ..|.|.-+ ...+.+.+.+ ....|||||||+.+. .++++.|+.++..|.+.
T Consensus 240 l~a~--~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~------------- 304 (852)
T TIGR03346 240 LIAG--AKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELH------------- 304 (852)
T ss_pred Hhhc--chhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceE-------------
Confidence 3211 12444211 1223333333 345899999999774 35788888888877765
Q ss_pred EEEecCC
Q 001788 773 FILTADW 779 (1013)
Q Consensus 773 iI~TSN~ 779 (1013)
+|.+||.
T Consensus 305 ~IgaTt~ 311 (852)
T TIGR03346 305 CIGATTL 311 (852)
T ss_pred EEEeCcH
Confidence 7888863
No 176
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.76 E-value=9e-08 Score=100.07 Aligned_cols=119 Identities=18% Similarity=0.276 Sum_probs=85.2
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCC--CCceeeeCCCCCCCCC
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGA--SPIMIPLGPRRDHEEP 708 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~--~~~~i~id~s~~~~~~ 708 (1013)
..|+|.++.++.+..... .|..| . ++|.||||+|||+.+..||+.+.|. ...+..+|.|+
T Consensus 27 ~dIVGNe~tv~rl~via~---~gnmP-----~-----liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASd----- 88 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAK---EGNMP-----N-----LIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASD----- 88 (333)
T ss_pred HHhhCCHHHHHHHHHHHH---cCCCC-----c-----eEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcc-----
Confidence 458999999988765443 23222 3 9999999999999999999999985 45567777775
Q ss_pred cccccccchhhhHHHHH-------HcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCC
Q 001788 709 EVRVRGKTALDKIGEAV-------KRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLP 781 (1013)
Q Consensus 709 ~~g~~G~~~~~~L~eal-------~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~ 781 (1013)
-+|-+....-...+ -...+.||+|||.|.|....|..|.+.|| +.-+-+.|.++||...
T Consensus 89 ---eRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtME-----------iyS~ttRFalaCN~s~ 154 (333)
T KOG0991|consen 89 ---ERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTME-----------IYSNTTRFALACNQSE 154 (333)
T ss_pred ---ccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHH-----------HHcccchhhhhhcchh
Confidence 34443322111111 12346799999999999999999999997 2223456999999643
No 177
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.75 E-value=9.8e-08 Score=112.92 Aligned_cols=175 Identities=11% Similarity=0.119 Sum_probs=114.3
Q ss_pred EEEeccCCCccchHHHHHHHHhcCC--CCceeeeCCCCCCCCCcccccccchhhhHHHHHHc-CCCEEEEEeCCCCCC--
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGA--SPIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKR-NPFSVILLEDIDEAD-- 742 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~--~~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~-~p~~VV~lDEIdka~-- 742 (1013)
++|+|++|+|||.|++++++.+... ...++.+++.++.......+ +.. .+.+.+.... ....||+||||+.+.
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l-~~~-~~~~~~~~~~~~~~dvLiIDDiq~l~~k 221 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDIL-QKT-HKEIEQFKNEICQNDVLIIDDVQFLSYK 221 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHH-HHh-hhHHHHHHHHhccCCEEEEeccccccCC
Confidence 9999999999999999999977532 34555666544321100000 000 0112112111 234699999999876
Q ss_pred HHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhcccccccccc
Q 001788 743 MVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRAS 822 (1013)
Q Consensus 743 ~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~ 822 (1013)
...|..|+.++..-. +.+ ..+|+|||.....+
T Consensus 222 ~~~~e~lf~l~N~~~--~~~--------k~iIltsd~~P~~l-------------------------------------- 253 (450)
T PRK14087 222 EKTNEIFFTIFNNFI--END--------KQLFFSSDKSPELL-------------------------------------- 253 (450)
T ss_pred HHHHHHHHHHHHHHH--HcC--------CcEEEECCCCHHHH--------------------------------------
Confidence 677888888885422 111 12788887422110
Q ss_pred chhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhc--ccee
Q 001788 823 WLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVD--SAIV 900 (1013)
Q Consensus 823 ~~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid--~iV~ 900 (1013)
..+.+.+.+|+. -++.
T Consensus 254 --------------------------------------------------------------~~l~~rL~SR~~~Gl~~~ 271 (450)
T PRK14087 254 --------------------------------------------------------------NGFDNRLITRFNMGLSIA 271 (450)
T ss_pred --------------------------------------------------------------hhccHHHHHHHhCCceec
Confidence 034567888884 4888
Q ss_pred cCCCChhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHHHhCCCCChHHHHHHHHHHHh
Q 001788 901 FKPVDFGRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLVGGVWLGRTGLEDWTEKVLV 961 (1013)
Q Consensus 901 F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~~~~~~gar~l~~~ie~~l~ 961 (1013)
+.|++.++...|+.+.+.. .++.+.++++++++|+..+-...|.++..+.+++.
T Consensus 272 L~~pd~e~r~~iL~~~~~~-------~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~ 325 (450)
T PRK14087 272 IQKLDNKTATAIIKKEIKN-------QNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLNF 325 (450)
T ss_pred cCCcCHHHHHHHHHHHHHh-------cCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 9999999999999887653 13335799999999999876667988888887753
No 178
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.75 E-value=3.2e-08 Score=120.60 Aligned_cols=53 Identities=23% Similarity=0.415 Sum_probs=43.1
Q ss_pred HHHHHhccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCC
Q 001788 625 LLKSLMEKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGA 692 (1013)
Q Consensus 625 L~~~L~~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~ 692 (1013)
+...+.+.|+||++++..+..++...+ . ++|+||||+|||++|+++++.++..
T Consensus 25 ~~~~~~~~vigq~~a~~~L~~~~~~~~----------~-----~l~~G~~G~GKttla~~l~~~l~~~ 77 (637)
T PRK13765 25 VPERLIDQVIGQEHAVEVIKKAAKQRR----------H-----VMMIGSPGTGKSMLAKAMAELLPKE 77 (637)
T ss_pred cCcccHHHcCChHHHHHHHHHHHHhCC----------e-----EEEECCCCCcHHHHHHHHHHHcChH
Confidence 344567789999999998888775321 1 9999999999999999999988644
No 179
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.74 E-value=3.4e-08 Score=125.22 Aligned_cols=121 Identities=14% Similarity=0.225 Sum_probs=83.2
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCC-------CCceeeeCCCC
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGA-------SPIMIPLGPRR 703 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~-------~~~~i~id~s~ 703 (1013)
+.|+||++.+..+...+.+... ++ ++|+||||||||.+|+.||..+... ...++.++++.
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~--------~n-----~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~ 244 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTK--------NN-----PVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA 244 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCc--------Cc-----eEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh
Confidence 4589999988887777753221 12 8999999999999999999988542 35667777764
Q ss_pred CCCCCcccccccch--hhhHHHHHHc-CCCEEEEEeCCCCCC--------HHHHHHHHHHHHcceEecCCCeEeecCceE
Q 001788 704 DHEEPEVRVRGKTA--LDKIGEAVKR-NPFSVILLEDIDEAD--------MVVRGNIKRAMERGRLVDSYGREISLGNVI 772 (1013)
Q Consensus 704 ~~~~~~~g~~G~~~--~~~L~eal~~-~p~~VV~lDEIdka~--------~~vq~~LL~~le~G~l~d~~g~~vd~~n~i 772 (1013)
...+ ..|.|.-+ ...+.+.+.+ ....|||||||+.+. .+.++.|+.++..|.+.
T Consensus 245 l~ag--~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~------------- 309 (857)
T PRK10865 245 LVAG--AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELH------------- 309 (857)
T ss_pred hhhc--cchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCe-------------
Confidence 3221 12444321 1223333332 345799999999875 24789999999888776
Q ss_pred EEEecCC
Q 001788 773 FILTADW 779 (1013)
Q Consensus 773 iI~TSN~ 779 (1013)
+|.+||.
T Consensus 310 ~IgaTt~ 316 (857)
T PRK10865 310 CVGATTL 316 (857)
T ss_pred EEEcCCC
Confidence 8998874
No 180
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.73 E-value=1.2e-07 Score=111.84 Aligned_cols=171 Identities=15% Similarity=0.234 Sum_probs=111.2
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccccccchhhhHHHHHHcCCCEEEEEeCCCCCC--HHH
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKRNPFSVILLEDIDEAD--MVV 745 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~~p~~VV~lDEIdka~--~~v 745 (1013)
++|+||+|+|||.|+++++..+......++.+++..+.......+.. .....+.... ....||+||||+.+. ...
T Consensus 144 l~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~-~~~~~f~~~~--~~~dvLiIDDiq~l~~k~~~ 220 (445)
T PRK12422 144 IYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRS-GEMQRFRQFY--RNVDALFIEDIEVFSGKGAT 220 (445)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhc-chHHHHHHHc--ccCCEEEEcchhhhcCChhh
Confidence 99999999999999999999886444555666554321100000000 0011111111 234699999999874 356
Q ss_pred HHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccchh
Q 001788 746 RGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLD 825 (1013)
Q Consensus 746 q~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~ 825 (1013)
|..|+.++..-. . .| ..+|+|||.....+
T Consensus 221 qeelf~l~N~l~-~--~~-------k~IIlts~~~p~~l----------------------------------------- 249 (445)
T PRK12422 221 QEEFFHTFNSLH-T--EG-------KLIVISSTCAPQDL----------------------------------------- 249 (445)
T ss_pred HHHHHHHHHHHH-H--CC-------CcEEEecCCCHHHH-----------------------------------------
Confidence 777777764211 1 11 23788886421100
Q ss_pred hhhhccccccccCCCcccchhhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhc--cceecCC
Q 001788 826 EEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVD--SAIVFKP 903 (1013)
Q Consensus 826 ~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid--~iV~F~P 903 (1013)
..+.+.+.+|+. .++.+.|
T Consensus 250 -----------------------------------------------------------~~l~~rL~SR~~~Gl~~~l~~ 270 (445)
T PRK12422 250 -----------------------------------------------------------KAMEERLISRFEWGIAIPLHP 270 (445)
T ss_pred -----------------------------------------------------------hhhHHHHHhhhcCCeEEecCC
Confidence 034567888885 6899999
Q ss_pred CChhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHHHhCCCCChHHHHHHHHHHH
Q 001788 904 VDFGRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLVGGVWLGRTGLEDWTEKVL 960 (1013)
Q Consensus 904 l~~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~~~~~~gar~l~~~ie~~l 960 (1013)
++.+++..|++..... ..+.+++++++||+...-.+.|.|+..++++.
T Consensus 271 pd~e~r~~iL~~k~~~---------~~~~l~~evl~~la~~~~~dir~L~g~l~~l~ 318 (445)
T PRK12422 271 LTKEGLRSFLERKAEA---------LSIRIEETALDFLIEALSSNVKSLLHALTLLA 318 (445)
T ss_pred CCHHHHHHHHHHHHHH---------cCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 9999999998765542 13789999999999976666798988888874
No 181
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.72 E-value=1.2e-07 Score=115.74 Aligned_cols=106 Identities=17% Similarity=0.196 Sum_probs=70.2
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccccccch------hhhH---HHHHHcCCCEEEEEeCC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGKTA------LDKI---GEAVKRNPFSVILLEDI 738 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G~~~------~~~L---~eal~~~p~~VV~lDEI 738 (1013)
+||.|++|+|||++|++|++.+.+ ..+|+++...... ...+|.-. .+.+ .+.+.+..++|+|||||
T Consensus 19 vLl~G~~GtgKs~lar~l~~~~~~-~~pfv~i~~~~t~----d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi 93 (589)
T TIGR02031 19 VAIRARAGTGKTALARALAEILPP-IMPFVELPLGVTE----DRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMA 93 (589)
T ss_pred EEEEcCCCcHHHHHHHHHHHhCCc-CCCeEecCcccch----hhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccch
Confidence 999999999999999999998754 3478888753211 11222210 0000 01122334579999999
Q ss_pred CCCCHHHHHHHHHHHHcceEecC-CCeEeec-CceEEEEecC
Q 001788 739 DEADMVVRGNIKRAMERGRLVDS-YGREISL-GNVIFILTAD 778 (1013)
Q Consensus 739 dka~~~vq~~LL~~le~G~l~d~-~g~~vd~-~n~iiI~TSN 778 (1013)
+++++.+|+.|+++|++|.++-. .|..... .+..+|+|+|
T Consensus 94 ~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~n 135 (589)
T TIGR02031 94 NLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYD 135 (589)
T ss_pred hhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecC
Confidence 99999999999999999986532 2322222 3456787776
No 182
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.70 E-value=3.9e-08 Score=105.39 Aligned_cols=123 Identities=15% Similarity=0.213 Sum_probs=85.5
Q ss_pred HHHhccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCC---CCceeeeCCCC
Q 001788 627 KSLMEKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGA---SPIMIPLGPRR 703 (1013)
Q Consensus 627 ~~L~~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~---~~~~i~id~s~ 703 (1013)
..|++.|--...+....+..|.+... ..+.| +|+.||+|.||+.+|+.|-+.-... ..+|+.+||..
T Consensus 180 ~~lksgiatrnp~fnrmieqierva~--rsr~p--------~ll~gptgagksflarriyelk~arhq~sg~fvevncat 249 (531)
T COG4650 180 DFLKSGIATRNPHFNRMIEQIERVAI--RSRAP--------ILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCAT 249 (531)
T ss_pred HHHHhcccccChHHHHHHHHHHHHHh--hccCC--------eEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeee
Confidence 34566666666677776776765433 22222 9999999999999999887654222 57899999987
Q ss_pred CCCCCcc-cccccchhhhH-------HHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEec
Q 001788 704 DHEEPEV-RVRGKTALDKI-------GEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVD 760 (1013)
Q Consensus 704 ~~~~~~~-g~~G~~~~~~L-------~eal~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d 760 (1013)
.-....+ ..+|+.. |.+ .+.++...++++|+|||..+..+-|..||++|++.+|..
T Consensus 250 lrgd~amsalfghvk-gaftga~~~r~gllrsadggmlfldeigelgadeqamllkaieekrf~p 313 (531)
T COG4650 250 LRGDTAMSALFGHVK-GAFTGARESREGLLRSADGGMLFLDEIGELGADEQAMLLKAIEEKRFYP 313 (531)
T ss_pred ecCchHHHHHHhhhc-cccccchhhhhhhhccCCCceEehHhhhhcCccHHHHHHHHHHhhccCC
Confidence 6443221 2333321 122 234556677899999999999999999999999988764
No 183
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=1.7e-07 Score=105.77 Aligned_cols=123 Identities=20% Similarity=0.284 Sum_probs=81.6
Q ss_pred cccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCC---CCCCC
Q 001788 632 KVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRR---DHEEP 708 (1013)
Q Consensus 632 ~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~---~~~~~ 708 (1013)
-..||..+...+..++.+.+..+ + +||.||+|+||+.+|..+|+.+......-. -.|.. ...+.
T Consensus 5 ~yPW~~~~~~~l~~~~~~~rl~H-------A-----~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~-~~c~~c~~~~~g~ 71 (319)
T PRK08769 5 FSPWQQRAYDQTVAALDAGRLGH-------G-----LLICGPEGLGKRAVALALAEHVLASGPDPA-AAQRTRQLIAAGT 71 (319)
T ss_pred ccccHHHHHHHHHHHHHcCCcce-------e-----EeeECCCCCCHHHHHHHHHHHHhCCCCCCC-CcchHHHHHhcCC
Confidence 46899999999988886444321 2 999999999999999999999986531100 00100 00111
Q ss_pred ccc---------c--------cccchhhhHHHHHHcCC----CEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEee
Q 001788 709 EVR---------V--------RGKTALDKIGEAVKRNP----FSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREIS 767 (1013)
Q Consensus 709 ~~g---------~--------~G~~~~~~L~eal~~~p----~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd 767 (1013)
.|. . ++.+....+.+.+...| +.|++||++|+|+...+|.||+.||+--
T Consensus 72 HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp---------- 141 (319)
T PRK08769 72 HPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPS---------- 141 (319)
T ss_pred CCCEEEEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCC----------
Confidence 111 1 11222334444444444 5799999999999999999999999622
Q ss_pred cCceEEEEecC
Q 001788 768 LGNVIFILTAD 778 (1013)
Q Consensus 768 ~~n~iiI~TSN 778 (1013)
.+++||++|+
T Consensus 142 -~~~~fiL~~~ 151 (319)
T PRK08769 142 -PGRYLWLISA 151 (319)
T ss_pred -CCCeEEEEEC
Confidence 4667888885
No 184
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1.9e-07 Score=104.23 Aligned_cols=67 Identities=19% Similarity=0.313 Sum_probs=46.0
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccccccchhhhHHHHHHcC-CCEEEEEeCCCC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKRN-PFSVILLEDIDE 740 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~~-p~~VV~lDEIdk 740 (1013)
+||+||||+|||.+||.||+...-++.. +... +-.|.|--+.+..-.|++.-++. .+-++||||.|-
T Consensus 387 ilfyGPPGTGKTm~ArelAr~SGlDYA~---mTGG---DVAPlG~qaVTkiH~lFDWakkS~rGLllFIDEADA 454 (630)
T KOG0742|consen 387 ILFYGPPGTGKTMFARELARHSGLDYAI---MTGG---DVAPLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADA 454 (630)
T ss_pred eeeeCCCCCCchHHHHHHHhhcCCceeh---hcCC---CccccchHHHHHHHHHHHHHhhcccceEEEehhhHH
Confidence 9999999999999999999987622211 1111 12344555555666778877664 455789999973
No 185
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.69 E-value=2.7e-07 Score=110.97 Aligned_cols=171 Identities=15% Similarity=0.169 Sum_probs=110.6
Q ss_pred EEEeccCCCccchHHHHHHHHhcCC--CCceeeeCCCCCCCCCcccccccchhhhHHHHHHcCCCEEEEEeCCCCCC--H
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGA--SPIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKRNPFSVILLEDIDEAD--M 743 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~--~~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~~p~~VV~lDEIdka~--~ 743 (1013)
++|+|++|+|||.|+++|++.+... ...++.+++.++.......... .....+.+.++ ...||+||||+.+. .
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~-~~~~~f~~~y~--~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRD-GKGDSFRRRYR--EMDILLVDDIQFLEDKE 393 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHh-ccHHHHHHHhh--cCCEEEEehhccccCCH
Confidence 9999999999999999999987532 3455666665432210000000 01112222222 24799999999874 3
Q ss_pred HHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchhhcccccchhhhhhhhhccchhhhHhhhccccccccccc
Q 001788 744 VVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASW 823 (1013)
Q Consensus 744 ~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~ 823 (1013)
..|..|+.+++.-. +. +.-||+|||.....+.
T Consensus 394 ~tqeeLF~l~N~l~--e~--------gk~IIITSd~~P~eL~-------------------------------------- 425 (617)
T PRK14086 394 STQEEFFHTFNTLH--NA--------NKQIVLSSDRPPKQLV-------------------------------------- 425 (617)
T ss_pred HHHHHHHHHHHHHH--hc--------CCCEEEecCCChHhhh--------------------------------------
Confidence 45777777775422 11 1126788875321110
Q ss_pred hhhhhhccccccccCCCcccchhhhhccCCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHhhhc--cceec
Q 001788 824 LDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVD--SAIVF 901 (1013)
Q Consensus 824 ~~~~~~~~~~~k~~~~~~~ldLn~~~~e~~~~~~~~~~sd~~~e~~~~~~~~~~~~~~~~~~~f~pefl~Rid--~iV~F 901 (1013)
.+.+.|.+|+. -++.+
T Consensus 426 --------------------------------------------------------------~l~~rL~SRf~~GLvv~I 443 (617)
T PRK14086 426 --------------------------------------------------------------TLEDRLRNRFEWGLITDV 443 (617)
T ss_pred --------------------------------------------------------------hccHHHHhhhhcCceEEc
Confidence 34557888884 47788
Q ss_pred CCCChhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHHHhCCCCChHHHHHHHHHHH
Q 001788 902 KPVDFGRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLVGGVWLGRTGLEDWTEKVL 960 (1013)
Q Consensus 902 ~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~~~~~~gar~l~~~ie~~l 960 (1013)
.+.+.+....|+.+.... ..+.+++++++||+...-..-|.|+..|.++.
T Consensus 444 ~~PD~EtR~aIL~kka~~---------r~l~l~~eVi~yLa~r~~rnvR~LegaL~rL~ 493 (617)
T PRK14086 444 QPPELETRIAILRKKAVQ---------EQLNAPPEVLEFIASRISRNIRELEGALIRVT 493 (617)
T ss_pred CCCCHHHHHHHHHHHHHh---------cCCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 899999999998765432 25788999999999986556688888888764
No 186
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.68 E-value=2.1e-07 Score=109.94 Aligned_cols=65 Identities=15% Similarity=0.066 Sum_probs=49.6
Q ss_pred ChhhHHhhhc--cceecCCCChhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHHHhCCCCChHHHHHHHHHHH
Q 001788 887 PSQDLLNSVD--SAIVFKPVDFGRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLVGGVWLGRTGLEDWTEKVL 960 (1013)
Q Consensus 887 f~pefl~Rid--~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~~~~~~gar~l~~~ie~~l 960 (1013)
+.+.+.+|+. .++.|.|++.+....|+++.+.. ..+.++++++++|+...-...|.|+..+.++.
T Consensus 244 l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~---------~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~ 310 (440)
T PRK14088 244 FQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEI---------EHGELPEEVLNFVAENVDDNLRRLRGAIIKLL 310 (440)
T ss_pred HHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHh---------cCCCCCHHHHHHHHhccccCHHHHHHHHHHHH
Confidence 3446677773 38889999999999998765432 14678999999999987666688888888764
No 187
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.68 E-value=1.9e-07 Score=105.49 Aligned_cols=122 Identities=18% Similarity=0.244 Sum_probs=83.4
Q ss_pred ccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCC------CC
Q 001788 633 VWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRD------HE 706 (1013)
Q Consensus 633 ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~------~~ 706 (1013)
..|+..+...+..++.+.+..+ + +||.||+|+||+.+|+.+|+.+......- .-.|... ..
T Consensus 4 yPW~~~~~~~l~~~~~~~rl~H-------A-----~Lf~G~~G~GK~~lA~~~A~~llC~~~~~-~~~Cg~C~sC~~~~~ 70 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLGHH-------A-----LLFKADSGLGTEQLIRALAQWLMCQTPQG-DQPCGQCHSCHLFQA 70 (325)
T ss_pred CcchHHHHHHHHHHHHcCCcce-------e-----EEeECCCCCCHHHHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHhc
Confidence 5899999999888887544322 2 99999999999999999999998643110 0011111 11
Q ss_pred CCccc----------ccccchhhhHHHHHHcC----CCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceE
Q 001788 707 EPEVR----------VRGKTALDKIGEAVKRN----PFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVI 772 (1013)
Q Consensus 707 ~~~~g----------~~G~~~~~~L~eal~~~----p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~i 772 (1013)
+..|. ..|.+....+.+.+... ++.|++||++|+|+...+|.||+.||+-. .+++
T Consensus 71 g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp-----------~~~~ 139 (325)
T PRK06871 71 GNHPDFHILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPR-----------PNTY 139 (325)
T ss_pred CCCCCEEEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCC-----------CCeE
Confidence 11121 12333344555555544 45799999999999999999999999622 4677
Q ss_pred EEEecC
Q 001788 773 FILTAD 778 (1013)
Q Consensus 773 iI~TSN 778 (1013)
||++|+
T Consensus 140 fiL~t~ 145 (325)
T PRK06871 140 FLLQAD 145 (325)
T ss_pred EEEEEC
Confidence 899885
No 188
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.67 E-value=2.2e-07 Score=105.48 Aligned_cols=119 Identities=18% Similarity=0.250 Sum_probs=76.0
Q ss_pred ccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCC------CC
Q 001788 633 VWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRD------HE 706 (1013)
Q Consensus 633 ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~------~~ 706 (1013)
.+||......+... | +.-.+ +||.||+|+||+++|+.+|+.+...... -.-.|... ..
T Consensus 5 yPWl~~~~~~~~~~------~----r~~ha-----~Lf~G~~G~GK~~~A~~~A~~llC~~~~-~~~~Cg~C~sC~~~~~ 68 (328)
T PRK05707 5 YPWQQSLWQQLAGR------G----RHPHA-----YLLHGPAGIGKRALAERLAAALLCEAPQ-GGGACGSCKGCQLLRA 68 (328)
T ss_pred CCCcHHHHHHHHHC------C----Cccee-----eeeECCCCCCHHHHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHhc
Confidence 47887777665432 1 11112 9999999999999999999999864211 00011111 01
Q ss_pred CCccc-----------ccccchhhhHHHHHHcC----CCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCce
Q 001788 707 EPEVR-----------VRGKTALDKIGEAVKRN----PFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNV 771 (1013)
Q Consensus 707 ~~~~g-----------~~G~~~~~~L~eal~~~----p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~ 771 (1013)
+..|. .++.+....+.+.+... ++.|++||++|+|+...+|.||+.||+-. .++
T Consensus 69 g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp-----------~~~ 137 (328)
T PRK05707 69 GSHPDNFVLEPEEADKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPS-----------GDT 137 (328)
T ss_pred CCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCC-----------CCe
Confidence 11111 12233344555555543 46799999999999999999999999621 356
Q ss_pred EEEEecC
Q 001788 772 IFILTAD 778 (1013)
Q Consensus 772 iiI~TSN 778 (1013)
+||++|+
T Consensus 138 ~fiL~t~ 144 (328)
T PRK05707 138 VLLLISH 144 (328)
T ss_pred EEEEEEC
Confidence 7888885
No 189
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.65 E-value=3.8e-07 Score=112.64 Aligned_cols=126 Identities=21% Similarity=0.240 Sum_probs=77.7
Q ss_pred cccccHHHHHHHHHHHHHhhh-----hcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCC
Q 001788 632 KVWWQQEAASAVATTVTQCKL-----GNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHE 706 (1013)
Q Consensus 632 ~ViGQ~~ai~~I~~ai~~~~~-----g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~ 706 (1013)
.+.|.+.+...+...+..... .....-|. + ++|+||||+|||++|++++..+. .+|+.++++++..
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~---g---ill~G~~G~GKt~~~~~~a~~~~---~~f~~is~~~~~~ 223 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPK---G---VLMVGPPGTGKTLLAKAIAGEAK---VPFFTISGSDFVE 223 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCC---c---EEEECCCCCCHHHHHHHHHHHcC---CCEEEEehHHhHH
Confidence 356777776666655543211 01111111 1 99999999999999999999875 7899998876543
Q ss_pred CCcccccccch--hhhHHHHHHcCCCEEEEEeCCCCCCH--------------HHHHHHHHHHHcceEecCCCeEeecCc
Q 001788 707 EPEVRVRGKTA--LDKIGEAVKRNPFSVILLEDIDEADM--------------VVRGNIKRAMERGRLVDSYGREISLGN 770 (1013)
Q Consensus 707 ~~~~g~~G~~~--~~~L~eal~~~p~~VV~lDEIdka~~--------------~vq~~LL~~le~G~l~d~~g~~vd~~n 770 (1013)
. |.|... ...+.+..+....+||||||||.+.. .+.+.||.-|+ |. .. -.+
T Consensus 224 ~----~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~md-g~-~~-------~~~ 290 (644)
T PRK10733 224 M----FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMD-GF-EG-------NEG 290 (644)
T ss_pred h----hhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhh-cc-cC-------CCC
Confidence 2 344322 23344444555559999999998732 24455555554 21 11 235
Q ss_pred eEEEEecCC
Q 001788 771 VIFILTADW 779 (1013)
Q Consensus 771 ~iiI~TSN~ 779 (1013)
.++|+|||.
T Consensus 291 vivIaaTN~ 299 (644)
T PRK10733 291 IIVIAATNR 299 (644)
T ss_pred eeEEEecCC
Confidence 678999983
No 190
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.63 E-value=4.8e-07 Score=97.30 Aligned_cols=69 Identities=23% Similarity=0.180 Sum_probs=49.7
Q ss_pred CChhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHHHhCCCCChHHHHHHHHHHHhHHHH
Q 001788 886 TPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLVGGVWLGRTGLEDWTEKVLVPSLH 965 (1013)
Q Consensus 886 ~f~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~~~~~~gar~l~~~ie~~l~~~l~ 965 (1013)
..++++++|+ -||...|++.+++++|+..... --.|.++++++..|+..+. .+.|+-.++ +.+|-+
T Consensus 350 Gip~dllDRl-~Iirt~~y~~~e~r~Ii~~Ra~---------~E~l~~~e~a~~~l~~~gt--~tsLRy~vq--Ll~p~~ 415 (456)
T KOG1942|consen 350 GIPPDLLDRL-LIIRTLPYDEEEIRQIIKIRAQ---------VEGLQVEEEALDLLAEIGT--STSLRYAVQ--LLTPAS 415 (456)
T ss_pred CCCHHHhhhe-eEEeeccCCHHHHHHHHHHHHh---------hhcceecHHHHHHHHhhcc--chhHHHHHH--hcCHHH
Confidence 6788999999 8999999999999999875332 1257899999999988632 245555543 444444
Q ss_pred HHH
Q 001788 966 QLK 968 (1013)
Q Consensus 966 ~~~ 968 (1013)
-+.
T Consensus 416 ~~a 418 (456)
T KOG1942|consen 416 ILA 418 (456)
T ss_pred HHH
Confidence 433
No 191
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.63 E-value=8.1e-07 Score=103.29 Aligned_cols=132 Identities=19% Similarity=0.224 Sum_probs=82.6
Q ss_pred cccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCC--------
Q 001788 632 KVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRR-------- 703 (1013)
Q Consensus 632 ~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~-------- 703 (1013)
.+++-++.++.+..++...+ . ++|+||||||||++|+.||..+.+.. .+.++++-.
T Consensus 176 d~~i~e~~le~l~~~L~~~~----------~-----iil~GppGtGKT~lA~~la~~l~~~~-~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 176 DLFIPETTIETILKRLTIKK----------N-----IILQGPPGVGKTFVARRLAYLLTGEK-APQRVNMVQFHQSYSYE 239 (459)
T ss_pred cccCCHHHHHHHHHHHhcCC----------C-----EEEECCCCCCHHHHHHHHHHHhcCCc-ccceeeEEeecccccHH
Confidence 46777777777777665211 1 99999999999999999999987542 222333221
Q ss_pred -CCCCCcccccccchh-hhHH---HHHHcCC--CEEEEEeCCCCCCHH-HHHHHHHHHHcce------Ee----cCCC-e
Q 001788 704 -DHEEPEVRVRGKTAL-DKIG---EAVKRNP--FSVILLEDIDEADMV-VRGNIKRAMERGR------LV----DSYG-R 764 (1013)
Q Consensus 704 -~~~~~~~g~~G~~~~-~~L~---eal~~~p--~~VV~lDEIdka~~~-vq~~LL~~le~G~------l~----d~~g-~ 764 (1013)
+..+..|++.|+... |.+. .....+| ..|||||||++++.+ ++..|+++||.+. +. ...+ .
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~ 319 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEER 319 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeecccccccc
Confidence 222444555565432 3332 3333333 479999999999965 6889999998642 11 1111 1
Q ss_pred EeecCceEEEEecCC
Q 001788 765 EISLGNVIFILTADW 779 (1013)
Q Consensus 765 ~vd~~n~iiI~TSN~ 779 (1013)
-.--.|.+||.|.|.
T Consensus 320 f~iP~Nl~IIgTMNt 334 (459)
T PRK11331 320 FYVPENVYIIGLMNT 334 (459)
T ss_pred ccCCCCeEEEEecCc
Confidence 122367778888875
No 192
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.62 E-value=1.7e-06 Score=92.89 Aligned_cols=120 Identities=17% Similarity=0.237 Sum_probs=85.5
Q ss_pred ccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccc
Q 001788 633 VWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRV 712 (1013)
Q Consensus 633 ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~ 712 (1013)
++|-+...+.|.....+...|...+ . +|++|+.|||||.+++++...+......+|.+.-...
T Consensus 29 L~Gie~Qk~~l~~Nt~~Fl~G~pan----n-----vLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L-------- 91 (249)
T PF05673_consen 29 LIGIERQKEALIENTEQFLQGLPAN----N-----VLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL-------- 91 (249)
T ss_pred hcCHHHHHHHHHHHHHHHHcCCCCc----c-----eEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh--------
Confidence 5788888888888888777775322 2 9999999999999999999988776666776664421
Q ss_pred cccchhhhHHHHHHcCCCE-EEEEeCCC-CCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCC
Q 001788 713 RGKTALDKIGEAVKRNPFS-VILLEDID-EADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADW 779 (1013)
Q Consensus 713 ~G~~~~~~L~eal~~~p~~-VV~lDEId-ka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~ 779 (1013)
.....+.+.++..|+. |||+|+.- .....-...|..+||.|--.. -.|++|.+|||.
T Consensus 92 ---~~l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~-------P~NvliyATSNR 150 (249)
T PF05673_consen 92 ---GDLPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEAR-------PDNVLIYATSNR 150 (249)
T ss_pred ---ccHHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccC-------CCcEEEEEecch
Confidence 1244677788877654 88999874 233345567777775443222 368899999984
No 193
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.62 E-value=5.7e-07 Score=109.49 Aligned_cols=52 Identities=23% Similarity=0.277 Sum_probs=40.9
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhc
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVS 690 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~ 690 (1013)
+.++||++.+..|..++.....+..+. -.++|+||+|+|||++++.||+.+.
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~--------~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPK--------RILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCC--------cEEEEECCCCCCHHHHHHHHHHHhh
Confidence 458999999999888886544332221 2389999999999999999999875
No 194
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=3.4e-07 Score=105.35 Aligned_cols=131 Identities=12% Similarity=0.162 Sum_probs=89.4
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCC-Cc-eeeeCCCCCCCC-
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGAS-PI-MIPLGPRRDHEE- 707 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~-~~-~i~id~s~~~~~- 707 (1013)
+++.+.++-+..+...+.....|..|. + ++++||||||||.+++.+.+.+.... .. ++.+||-.+.+.
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~----n-----~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPS----N-----IIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCc----c-----EEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 447888999999998887666554332 1 89999999999999999999997652 23 799999876531
Q ss_pred -------------CcccccccchhhhHHHHHHc-CCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEE
Q 001788 708 -------------PEVRVRGKTALDKIGEAVKR-NPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIF 773 (1013)
Q Consensus 708 -------------~~~g~~G~~~~~~L~eal~~-~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~ii 773 (1013)
+..|....+....+.+.+.. ...-||+|||+|.+-..-++.|+.++.-..-. ..+.++
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--------~~~v~v 159 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--------KVKVSI 159 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--------ceeEEE
Confidence 11133323334556666665 34468899999998776556666666432211 234567
Q ss_pred EEecC
Q 001788 774 ILTAD 778 (1013)
Q Consensus 774 I~TSN 778 (1013)
|+.+|
T Consensus 160 i~i~n 164 (366)
T COG1474 160 IAVSN 164 (366)
T ss_pred EEEec
Confidence 88777
No 195
>PRK09087 hypothetical protein; Validated
Probab=98.61 E-value=5.4e-07 Score=97.22 Aligned_cols=65 Identities=8% Similarity=0.021 Sum_probs=50.2
Q ss_pred ChhhHHhhhc--cceecCCCChhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHHHhCCCCChHHHHHHHHHHH
Q 001788 887 PSQDLLNSVD--SAIVFKPVDFGRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLVGGVWLGRTGLEDWTEKVL 960 (1013)
Q Consensus 887 f~pefl~Rid--~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~~~~~~gar~l~~~ie~~l 960 (1013)
+.|++.+|+. .++.+.|++.+++..++++.+.. ..+.+++++++||+...-..-|.+...+.++-
T Consensus 134 ~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~---------~~~~l~~ev~~~La~~~~r~~~~l~~~l~~L~ 200 (226)
T PRK09087 134 KLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFAD---------RQLYVDPHVVYYLVSRMERSLFAAQTIVDRLD 200 (226)
T ss_pred ccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHH---------cCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3568889986 58899999999999999876653 24789999999999986544466766665543
No 196
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.5e-07 Score=101.42 Aligned_cols=127 Identities=20% Similarity=0.241 Sum_probs=81.0
Q ss_pred ccccHHHHHHHHHHHHHhh----hhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCC
Q 001788 633 VWWQQEAASAVATTVTQCK----LGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEP 708 (1013)
Q Consensus 633 ViGQ~~ai~~I~~ai~~~~----~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~ 708 (1013)
|-|-+.|.+++..++.-.. .--..++|... ||++||||+||++||+++|..-. ..|..+..|+....
T Consensus 135 VAGLE~AKeALKEAVILPIKFPqlFtGkR~Pwrg-----iLLyGPPGTGKSYLAKAVATEAn---STFFSvSSSDLvSK- 205 (439)
T KOG0739|consen 135 VAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRG-----ILLYGPPGTGKSYLAKAVATEAN---STFFSVSSSDLVSK- 205 (439)
T ss_pred hccchhHHHHHHhheeecccchhhhcCCCCccee-----EEEeCCCCCcHHHHHHHHHhhcC---CceEEeehHHHHHH-
Confidence 4555556666666554221 11124445433 99999999999999999998764 56777776653322
Q ss_pred cccccccch--hhhHHHHHHcCCCEEEEEeCCCCCC-----------HHHHHHHHHHHHcceEecCCCeEeecCceEEEE
Q 001788 709 EVRVRGKTA--LDKIGEAVKRNPFSVILLEDIDEAD-----------MVVRGNIKRAMERGRLVDSYGREISLGNVIFIL 775 (1013)
Q Consensus 709 ~~g~~G~~~--~~~L~eal~~~p~~VV~lDEIdka~-----------~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~ 775 (1013)
+.|..+ ...|++..+++..+||||||||-+. ..+-.-||--|+ |...|-..++++.
T Consensus 206 ---WmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMq--------GVG~d~~gvLVLg 274 (439)
T KOG0739|consen 206 ---WMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQ--------GVGNDNDGVLVLG 274 (439)
T ss_pred ---HhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhh--------ccccCCCceEEEe
Confidence 455443 3578888888888999999999653 234444444442 2223344566777
Q ss_pred ecCC
Q 001788 776 TADW 779 (1013)
Q Consensus 776 TSN~ 779 (1013)
+||+
T Consensus 275 ATNi 278 (439)
T KOG0739|consen 275 ATNI 278 (439)
T ss_pred cCCC
Confidence 7775
No 197
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.2e-07 Score=101.87 Aligned_cols=128 Identities=14% Similarity=0.232 Sum_probs=83.9
Q ss_pred ccccccHHHHHHHHHHHHHh--------hhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCC
Q 001788 631 EKVWWQQEAASAVATTVTQC--------KLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPR 702 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~--------~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s 702 (1013)
..|-|-+..|.+|..++.-. -.|+.+.++ ++++|+||+|||.||+++|+.- ...|+++-.|
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKG--------VIlyG~PGTGKTLLAKAVANqT---SATFlRvvGs 253 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKG--------VILYGEPGTGKTLLAKAVANQT---SATFLRVVGS 253 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCe--------eEEeCCCCCchhHHHHHHhccc---chhhhhhhhH
Confidence 34667777777777776532 223333322 8999999999999999999854 3677777766
Q ss_pred CCCCCCcccccccc--hhhhHHHHHHcCCCEEEEEeCCCCCC-----------HHHHHHHHHHHHcceEecCCCeEeecC
Q 001788 703 RDHEEPEVRVRGKT--ALDKIGEAVKRNPFSVILLEDIDEAD-----------MVVRGNIKRAMERGRLVDSYGREISLG 769 (1013)
Q Consensus 703 ~~~~~~~~g~~G~~--~~~~L~eal~~~p~~VV~lDEIdka~-----------~~vq~~LL~~le~G~l~d~~g~~vd~~ 769 (1013)
+.... |.|.. ....++.....+..+||||||||-.. .++|..+|+++..=.=.|+. .
T Consensus 254 eLiQk----ylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsr------g 323 (440)
T KOG0726|consen 254 ELIQK----YLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR------G 323 (440)
T ss_pred HHHHH----HhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCcccc------C
Confidence 53222 44432 22345555556666999999999642 57999999988531111222 2
Q ss_pred ceEEEEecCC
Q 001788 770 NVIFILTADW 779 (1013)
Q Consensus 770 n~iiI~TSN~ 779 (1013)
++-+||+||.
T Consensus 324 DvKvimATnr 333 (440)
T KOG0726|consen 324 DVKVIMATNR 333 (440)
T ss_pred CeEEEEeccc
Confidence 3448999984
No 198
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=3.9e-07 Score=102.70 Aligned_cols=122 Identities=9% Similarity=0.138 Sum_probs=83.3
Q ss_pred cccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCC------C
Q 001788 632 KVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRD------H 705 (1013)
Q Consensus 632 ~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~------~ 705 (1013)
-.+||......+..++.+.+..+ + +||.||.|+||+.+|+.+|+.+......- -.|... .
T Consensus 4 ~yPWl~~~~~~l~~~~~~~rl~h-------A-----~L~~G~~G~Gk~~lA~~~a~~llC~~~~~--~~Cg~C~sC~~~~ 69 (319)
T PRK06090 4 DYPWLVPVWQNWKAGLDAGRIPG-------A-----LLLQSDEGLGVESLVELFSRALLCQNYQS--EACGFCHSCELMQ 69 (319)
T ss_pred CcccHHHHHHHHHHHHHcCCcce-------e-----EeeECCCCCCHHHHHHHHHHHHcCCCCCC--CCCCCCHHHHHHH
Confidence 46899999998888876444321 2 99999999999999999999998654211 112111 0
Q ss_pred CCCcccc-----------cccchhhhHHHHHHcC----CCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCc
Q 001788 706 EEPEVRV-----------RGKTALDKIGEAVKRN----PFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGN 770 (1013)
Q Consensus 706 ~~~~~g~-----------~G~~~~~~L~eal~~~----p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n 770 (1013)
.+..|.+ ++.+....+.+.+... ++.|++||++|+|+...+|.||+.+|+-. .+
T Consensus 70 ~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-----------~~ 138 (319)
T PRK06090 70 SGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPA-----------PN 138 (319)
T ss_pred cCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCC-----------CC
Confidence 1112211 2222334444554443 46899999999999999999999999622 46
Q ss_pred eEEEEecC
Q 001788 771 VIFILTAD 778 (1013)
Q Consensus 771 ~iiI~TSN 778 (1013)
++||++|+
T Consensus 139 t~fiL~t~ 146 (319)
T PRK06090 139 CLFLLVTH 146 (319)
T ss_pred eEEEEEEC
Confidence 77898885
No 199
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=3.4e-07 Score=104.23 Aligned_cols=123 Identities=15% Similarity=0.131 Sum_probs=84.0
Q ss_pred cccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCC------C
Q 001788 632 KVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRD------H 705 (1013)
Q Consensus 632 ~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~------~ 705 (1013)
-..||..+.+.+...+...+..+ + +||.||+|+||+++|+++|+.+...... -.-.|... .
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~H-------A-----~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~-~~~~Cg~C~sC~~~~ 69 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHH-------A-----LLIQALPGMGDDALIYALSRWLMCQQPQ-GHKSCGHCRGCQLMQ 69 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcce-------E-----EeeECCCCCCHHHHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHH
Confidence 35899999999888886544322 2 9999999999999999999999864211 00012211 0
Q ss_pred CCCccc-----------ccccchhhhHHHHHHcC----CCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCc
Q 001788 706 EEPEVR-----------VRGKTALDKIGEAVKRN----PFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGN 770 (1013)
Q Consensus 706 ~~~~~g-----------~~G~~~~~~L~eal~~~----p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n 770 (1013)
.+..|. .++.+....+.+.+... .+.|++||++|+|+...+|.||+.||+-- .+
T Consensus 70 ~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-----------~~ 138 (334)
T PRK07993 70 AGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPP-----------EN 138 (334)
T ss_pred cCCCCCEEEEecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCC-----------CC
Confidence 111111 12333444555555544 45799999999999999999999999632 46
Q ss_pred eEEEEecC
Q 001788 771 VIFILTAD 778 (1013)
Q Consensus 771 ~iiI~TSN 778 (1013)
++||++|+
T Consensus 139 t~fiL~t~ 146 (334)
T PRK07993 139 TWFFLACR 146 (334)
T ss_pred eEEEEEEC
Confidence 77898885
No 200
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=2.9e-06 Score=97.67 Aligned_cols=126 Identities=14% Similarity=0.155 Sum_probs=86.8
Q ss_pred cCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccccccchhhhHHHHHHHHHHHHhhc---C-CCCceEEEecchh
Q 001788 204 GGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKDFTCDKAGIVSKLKDLGALIETKF---G-NGDGVILDLGDLK 277 (1013)
Q Consensus 204 vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~~~~rge~e~r~~~l~~~~~~~~---~-~~~~~il~idel~ 277 (1013)
-|+| |||-+++.+-.++...+ |.-..|=+| +.-|-||-|+.+.+|++.+|+-. | +.+=.|+-+|||.
T Consensus 262 yGPPGTGKTLiARqIGkMLNAre-PKIVNGPeI------L~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiD 334 (744)
T KOG0741|consen 262 YGPPGTGKTLIARQIGKMLNARE-PKIVNGPEI------LNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEID 334 (744)
T ss_pred ECCCCCChhHHHHHHHHHhcCCC-CcccCcHHH------HHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhH
Confidence 8999 99999999988776654 422222111 12499999999999999998754 2 2345788889999
Q ss_pred HHHhcccccCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEecCHHHHHHhhhcCCCCCCCCCCe
Q 001788 278 WLVEQQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATCETYLRCQVYHPSMENDWDLQ 351 (1013)
Q Consensus 278 ~l~~~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~IgatT~~~Y~k~~~~~~ale~~~rfq 351 (1013)
.+....++.+|+ +.....+|.++..=+...- .--.+-+||-|+... .-|-||=..-||.
T Consensus 335 AICKqRGS~~g~---------TGVhD~VVNQLLsKmDGVe-qLNNILVIGMTNR~D-----lIDEALLRPGRlE 393 (744)
T KOG0741|consen 335 AICKQRGSMAGS---------TGVHDTVVNQLLSKMDGVE-QLNNILVIGMTNRKD-----LIDEALLRPGRLE 393 (744)
T ss_pred HHHHhcCCCCCC---------CCccHHHHHHHHHhcccHH-hhhcEEEEeccCchh-----hHHHHhcCCCceE
Confidence 999988664441 3466777777765555433 344899999998744 3456664455664
No 201
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=3.1e-07 Score=97.25 Aligned_cols=107 Identities=19% Similarity=0.285 Sum_probs=68.0
Q ss_pred cccccHHHHHHHHHHHHHh--------hhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCC
Q 001788 632 KVWWQQEAASAVATTVTQC--------KLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRR 703 (1013)
Q Consensus 632 ~ViGQ~~ai~~I~~ai~~~--------~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~ 703 (1013)
.|-|-+..|.++..+|... ..|+.|.+ | +|++||||+|||.+||+-|..-. ..|..+....
T Consensus 172 DiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPK--G------vLmYGPPGTGKTlmARAcAaqT~---aTFLKLAgPQ 240 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPK--G------VLMYGPPGTGKTLMARACAAQTN---ATFLKLAGPQ 240 (424)
T ss_pred ccccHHHHHHHHHHHhccccccHHHHHhcCCCCCC--c------eEeeCCCCCcHHHHHHHHHHhcc---chHHHhcchH
Confidence 4677777788888877532 12232322 2 89999999999999999887543 4455544332
Q ss_pred CCCCCcccccccch---hhhHHHHHHcCCCEEEEEeCCCCC-----------CHHHHHHHHHHHH
Q 001788 704 DHEEPEVRVRGKTA---LDKIGEAVKRNPFSVILLEDIDEA-----------DMVVRGNIKRAME 754 (1013)
Q Consensus 704 ~~~~~~~g~~G~~~---~~~L~eal~~~p~~VV~lDEIdka-----------~~~vq~~LL~~le 754 (1013)
... -|+|... .+.+ ...+.+...||||||+|-. +.+||...|+++.
T Consensus 241 LVQ----MfIGdGAkLVRDAF-aLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLN 300 (424)
T KOG0652|consen 241 LVQ----MFIGDGAKLVRDAF-ALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLN 300 (424)
T ss_pred HHh----hhhcchHHHHHHHH-HHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHH
Confidence 211 2444321 1222 2234444599999999853 5689999999885
No 202
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=3.8e-07 Score=105.09 Aligned_cols=133 Identities=21% Similarity=0.261 Sum_probs=82.7
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCC-Cce-----e-eeCCCC
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGAS-PIM-----I-PLGPRR 703 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~-~~~-----i-~id~s~ 703 (1013)
+.|+||+.|.+.+-.+. .|-. + +||+||||||||.+|+.+...|..-. ..+ | .++. .
T Consensus 179 ~DV~GQ~~AKrAleiAA----AGgH------n-----Ll~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g-~ 242 (490)
T COG0606 179 KDVKGQEQAKRALEIAA----AGGH------N-----LLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAG-D 242 (490)
T ss_pred hhhcCcHHHHHHHHHHH----hcCC------c-----EEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcc-c
Confidence 45899999988766544 3311 1 99999999999999998887774220 000 1 1111 0
Q ss_pred CCCC----------------CcccccccchhhhHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCC--CeE
Q 001788 704 DHEE----------------PEVRVRGKTALDKIGEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSY--GRE 765 (1013)
Q Consensus 704 ~~~~----------------~~~g~~G~~~~~~L~eal~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~--g~~ 765 (1013)
+..+ +-+..+|.. +......+...-++|+||||.-.....+++.|.+=||+|+++-+. ++.
T Consensus 243 ~~~~~~~~~~rPFr~PHHsaS~~aLvGGG-~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~~v 321 (490)
T COG0606 243 LHEGCPLKIHRPFRAPHHSASLAALVGGG-GVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKV 321 (490)
T ss_pred ccccCccceeCCccCCCccchHHHHhCCC-CCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCCee
Confidence 0000 000111111 001112223334579999999999999999999999999887543 344
Q ss_pred eecCceEEEEecCCC
Q 001788 766 ISLGNVIFILTADWL 780 (1013)
Q Consensus 766 vd~~n~iiI~TSN~g 780 (1013)
....+-++|+++|..
T Consensus 322 ~ypa~Fqlv~AmNpc 336 (490)
T COG0606 322 TYPARFQLVAAMNPC 336 (490)
T ss_pred EEeeeeEEhhhcCCC
Confidence 555666688888864
No 203
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.51 E-value=3.3e-07 Score=108.97 Aligned_cols=132 Identities=17% Similarity=0.207 Sum_probs=82.4
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCC-----
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDH----- 705 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~----- 705 (1013)
..++||..+++.+..++. +...++|.||+|+|||++++.|+..+...... ..++.+...
T Consensus 191 ~~v~Gq~~~~~al~laa~---------------~G~~llliG~~GsGKTtLak~L~gllpp~~g~-e~le~~~i~s~~g~ 254 (506)
T PRK09862 191 SDVIGQEQGKRGLEITAA---------------GGHNLLLIGPPGTGKTMLASRINGLLPDLSNE-EALESAAILSLVNA 254 (506)
T ss_pred EEEECcHHHHhhhheecc---------------CCcEEEEECCCCCcHHHHHHHHhccCCCCCCc-EEEecchhhhhhcc
Confidence 357899887766543332 11129999999999999999999887533111 112211100
Q ss_pred ---C---CCcc-----------cccccchhhhHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecC--CCeEe
Q 001788 706 ---E---EPEV-----------RVRGKTALDKIGEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDS--YGREI 766 (1013)
Q Consensus 706 ---~---~~~~-----------g~~G~~~~~~L~eal~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~--~g~~v 766 (1013)
. ..+| +.+|.... .-.+.+....+.|+|||||+.+++.+|..|++.||+|.++.. ++...
T Consensus 255 ~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~-~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~ 333 (506)
T PRK09862 255 ESVQKQWRQRPFRSPHHSASLTAMVGGGAI-PGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKIT 333 (506)
T ss_pred ccccCCcCCCCccCCCccchHHHHhCCCce-ehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCccee
Confidence 0 0001 12221100 112345555668999999999999999999999999998632 22222
Q ss_pred ecCceEEEEecCC
Q 001788 767 SLGNVIFILTADW 779 (1013)
Q Consensus 767 d~~n~iiI~TSN~ 779 (1013)
.-.+..+|+|+|-
T Consensus 334 ~pa~f~lIAa~NP 346 (506)
T PRK09862 334 YPARFQLVAAMNP 346 (506)
T ss_pred ccCCEEEEEeecC
Confidence 3356679999985
No 204
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.2e-06 Score=100.44 Aligned_cols=90 Identities=19% Similarity=0.246 Sum_probs=61.1
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccccccchhhhHHHHHHc-CCCEEEEEeCCCCCC----
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKR-NPFSVILLEDIDEAD---- 742 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~-~p~~VV~lDEIdka~---- 742 (1013)
.||+||||||||.+.-+||..|. ..+..++.++... .+.|-..+.. .+.+||+|++||.+-
T Consensus 238 YLLYGPPGTGKSS~IaAmAn~L~---ydIydLeLt~v~~-----------n~dLr~LL~~t~~kSIivIEDIDcs~~l~~ 303 (457)
T KOG0743|consen 238 YLLYGPPGTGKSSFIAAMANYLN---YDIYDLELTEVKL-----------DSDLRHLLLATPNKSILLIEDIDCSFDLRE 303 (457)
T ss_pred ceeeCCCCCCHHHHHHHHHhhcC---CceEEeeeccccC-----------cHHHHHHHHhCCCCcEEEEeeccccccccc
Confidence 99999999999999999999996 5666777664211 1224444433 456899999999651
Q ss_pred --------------HHHHHHHHHHHHcceEecCCCeEeecCceEEEEecC
Q 001788 743 --------------MVVRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778 (1013)
Q Consensus 743 --------------~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN 778 (1013)
.-.+..||..++ |--..+++ .-|||||||
T Consensus 304 ~~~~~~~~~~~~~~~VTlSGLLNfiD-GlwSscg~------ERIivFTTN 346 (457)
T KOG0743|consen 304 RRKKKKENFEGDLSRVTLSGLLNFLD-GLWSSCGD------ERIIVFTTN 346 (457)
T ss_pred ccccccccccCCcceeehHHhhhhhc-cccccCCC------ceEEEEecC
Confidence 123456777773 44333321 247899998
No 205
>PRK12377 putative replication protein; Provisional
Probab=98.47 E-value=2.4e-07 Score=101.03 Aligned_cols=107 Identities=10% Similarity=0.128 Sum_probs=68.7
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccccccchhhhHHHHHHcCCCEEEEEeCC--CCCCHH
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKRNPFSVILLEDI--DEADMV 744 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~~p~~VV~lDEI--dka~~~ 744 (1013)
+++|+||+|||||.||.+|++.+......++.+.+.++.......|........+.+.+. ...||+|||| ++.+..
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~--~~dLLiIDDlg~~~~s~~ 180 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELC--KVDLLVLDEIGIQRETKN 180 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCCCCHH
Confidence 399999999999999999999997555555555554322110011111111122333333 3469999999 667788
Q ss_pred HHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchh
Q 001788 745 VRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLK 785 (1013)
Q Consensus 745 vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~ 785 (1013)
.+..|+++++...-.. .. .|+|||+..+.+.
T Consensus 181 ~~~~l~~ii~~R~~~~-------~p---tiitSNl~~~~l~ 211 (248)
T PRK12377 181 EQVVLNQIIDRRTASM-------RS---VGMLTNLNHEAMS 211 (248)
T ss_pred HHHHHHHHHHHHHhcC-------CC---EEEEcCCCHHHHH
Confidence 8999999997543210 01 6899998766554
No 206
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=1.3e-06 Score=99.52 Aligned_cols=121 Identities=13% Similarity=0.137 Sum_probs=75.7
Q ss_pred ccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCC------CC
Q 001788 633 VWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRD------HE 706 (1013)
Q Consensus 633 ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~------~~ 706 (1013)
..||....+.+... + + +-| .+ +||.||+|+||+.+|+.+|+.+......-..-.|... ..
T Consensus 3 yPW~~~~~~~l~~~--~---~---rl~-ha-----~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~ 68 (342)
T PRK06964 3 YPWQTDDWNRLQAL--R---A---RLP-HA-----LLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQ 68 (342)
T ss_pred CcccHHHHHHHHHh--c---C---Ccc-eE-----EEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc
Confidence 47888877776663 1 1 111 12 9999999999999999999999764310000011110 00
Q ss_pred CCccc-------------------------------------ccccchhhhHHHHHHcC----CCEEEEEeCCCCCCHHH
Q 001788 707 EPEVR-------------------------------------VRGKTALDKIGEAVKRN----PFSVILLEDIDEADMVV 745 (1013)
Q Consensus 707 ~~~~g-------------------------------------~~G~~~~~~L~eal~~~----p~~VV~lDEIdka~~~v 745 (1013)
+..|. .++.+....+.+.+... ++.|++||++|+|+...
T Consensus 69 ~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~A 148 (342)
T PRK06964 69 GNHPDYRIVRPEALAAEAPGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAA 148 (342)
T ss_pred CCCCCEEEEecccccccccccccccccchhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHHH
Confidence 11110 12222333444444433 45799999999999999
Q ss_pred HHHHHHHHHcceEecCCCeEeecCceEEEEecC
Q 001788 746 RGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778 (1013)
Q Consensus 746 q~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN 778 (1013)
+|.||+.||+- -.+++||++|+
T Consensus 149 aNaLLKtLEEP-----------p~~t~fiL~t~ 170 (342)
T PRK06964 149 ANALLKTLEEP-----------PPGTVFLLVSA 170 (342)
T ss_pred HHHHHHHhcCC-----------CcCcEEEEEEC
Confidence 99999999952 14677888885
No 207
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=5.2e-07 Score=98.57 Aligned_cols=99 Identities=19% Similarity=0.326 Sum_probs=60.7
Q ss_pred EEEeccCCCccchHHHHHHHHhcCC------CCceeeeCCCCCCCCCcccccccc------hhhhHHHHHHcCCCE-EEE
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGA------SPIMIPLGPRRDHEEPEVRVRGKT------ALDKIGEAVKRNPFS-VIL 734 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~------~~~~i~id~s~~~~~~~~g~~G~~------~~~~L~eal~~~p~~-VV~ 734 (1013)
+|+.||||||||.|+++||+.+--+ ...++.+++.... ..+++.. ..+.+.+.+.....- .|+
T Consensus 180 iLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLF----SKWFsESgKlV~kmF~kI~ELv~d~~~lVfvL 255 (423)
T KOG0744|consen 180 ILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLF----SKWFSESGKLVAKMFQKIQELVEDRGNLVFVL 255 (423)
T ss_pred EEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHH----HHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 8999999999999999999988521 2234444443211 1122211 112334444443322 378
Q ss_pred EeCCCCCC---------------HHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCC
Q 001788 735 LEDIDEAD---------------MVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADW 779 (1013)
Q Consensus 735 lDEIdka~---------------~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~ 779 (1013)
|||+|-+. ..+.|.||.-|+.=+ ...|++|..|||+
T Consensus 256 IDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK---------~~~NvliL~TSNl 306 (423)
T KOG0744|consen 256 IDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK---------RYPNVLILATSNL 306 (423)
T ss_pred eHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc---------cCCCEEEEeccch
Confidence 99999653 248899998887322 2467888888875
No 208
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.41 E-value=3.3e-06 Score=95.93 Aligned_cols=110 Identities=18% Similarity=0.205 Sum_probs=69.9
Q ss_pred ccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCC------CC
Q 001788 633 VWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRD------HE 706 (1013)
Q Consensus 633 ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~------~~ 706 (1013)
.+|+..+...+.... + +-+ .+ +||.||+|+||+++|+.+|+.+......--...|... ..
T Consensus 3 yPW~~~~w~~l~~~~-----~---r~~-hA-----~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~ 68 (325)
T PRK08699 3 YPWHQEQWRQIAEHW-----E---RRP-NA-----WLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQ 68 (325)
T ss_pred CCccHHHHHHHHHhc-----C---Ccc-eE-----EEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhc
Confidence 478888887776551 1 111 12 9999999999999999999999743210000011110 00
Q ss_pred CCcc--------------c----ccccchhhhHHHHHHcCC----CEEEEEeCCCCCCHHHHHHHHHHHHcc
Q 001788 707 EPEV--------------R----VRGKTALDKIGEAVKRNP----FSVILLEDIDEADMVVRGNIKRAMERG 756 (1013)
Q Consensus 707 ~~~~--------------g----~~G~~~~~~L~eal~~~p----~~VV~lDEIdka~~~vq~~LL~~le~G 756 (1013)
+..| | ..+.+....+.+.+...| +.|+++|+++.+++..++.|++.|++.
T Consensus 69 ~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep 140 (325)
T PRK08699 69 GSHPDFYEITPLSDEPENGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEP 140 (325)
T ss_pred CCCCCEEEEecccccccccccCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhC
Confidence 1111 1 122333445556665444 579999999999999999999999974
No 209
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.39 E-value=1.9e-06 Score=102.57 Aligned_cols=143 Identities=10% Similarity=0.120 Sum_probs=102.4
Q ss_pred CCcccccCCCcccCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-c-ccchhhhHHHHHHHHHHHHhhcCCCC
Q 001788 192 MNPRLQQAGGVCGGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-F-TCDKAGIVSKLKDLGALIETKFGNGD 267 (1013)
Q Consensus 192 ~np~l~~~~~~~vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~-~~~rge~e~r~~~l~~~~~~~~~~~~ 267 (1013)
.+.+| .|+| |||.+++.+|..+...-.-..-....++.+... + ..|.|+.+.+++.+++.+++....+.
T Consensus 217 ~GILL-------yGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~ 289 (512)
T TIGR03689 217 KGVLL-------YGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGR 289 (512)
T ss_pred cceEE-------ECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCC
Confidence 35677 9999 999999999998754311111122345555544 4 35999999999999999887544467
Q ss_pred ceEEEecchhHHHhcccccCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEecCHHHHHHhhhcCCCCCCC
Q 001788 268 GVILDLGDLKWLVEQQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATCETYLRCQVYHPSMEND 347 (1013)
Q Consensus 268 ~~il~idel~~l~~~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~IgatT~~~Y~k~~~~~~ale~~ 347 (1013)
++||||||++.++.....+.+ .+....++..+.+.|...- ..+.+-+||||+..+ ..|||| -
T Consensus 290 p~IIfIDEiD~L~~~R~~~~s----------~d~e~~il~~LL~~LDgl~-~~~~ViVI~ATN~~d-----~LDpAL--l 351 (512)
T TIGR03689 290 PVIVFFDEMDSIFRTRGSGVS----------SDVETTVVPQLLSELDGVE-SLDNVIVIGASNRED-----MIDPAI--L 351 (512)
T ss_pred CceEEEehhhhhhcccCCCcc----------chHHHHHHHHHHHHhcccc-cCCceEEEeccCChh-----hCCHhh--c
Confidence 999999999999977532111 1233456677777777666 578899999998865 459999 7
Q ss_pred C--CCe-eeeccCCCC
Q 001788 348 W--DLQ-AVPIAAKTP 360 (1013)
Q Consensus 348 ~--rfq-~v~v~e~~~ 360 (1013)
| ||. .|.++. |+
T Consensus 352 RpGRfD~~I~~~~-Pd 366 (512)
T TIGR03689 352 RPGRLDVKIRIER-PD 366 (512)
T ss_pred CccccceEEEeCC-CC
Confidence 7 994 477777 63
No 210
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=2.5e-06 Score=102.17 Aligned_cols=127 Identities=21% Similarity=0.271 Sum_probs=86.5
Q ss_pred ccccccHHHHHHHHHHHHHhhh-----hcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCC
Q 001788 631 EKVWWQQEAASAVATTVTQCKL-----GNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDH 705 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~-----g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~ 705 (1013)
..|-|.+++.+++...+--.+. .++.+-|.+ +++.||||||||.+||++|.... .||..+..|+|.
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkG------vlLvGpPGTGKTLLAkAvAgEA~---VPFf~iSGS~FV 220 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKG------VLLVGPPGTGKTLLAKAVAGEAG---VPFFSISGSDFV 220 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccc------eeEecCCCCCcHHHHHHHhcccC---CCceeccchhhh
Confidence 4588999999888887754432 112233333 89999999999999999998654 899999999876
Q ss_pred CCCcccccccc--hhhhHHHHHHcCCCEEEEEeCCCCCCH--------------HHHHHHHHHHHcceEecCCCeEeecC
Q 001788 706 EEPEVRVRGKT--ALDKIGEAVKRNPFSVILLEDIDEADM--------------VVRGNIKRAMERGRLVDSYGREISLG 769 (1013)
Q Consensus 706 ~~~~~g~~G~~--~~~~L~eal~~~p~~VV~lDEIdka~~--------------~vq~~LL~~le~G~l~d~~g~~vd~~ 769 (1013)
+- |+|.. ....+++.-+++-.+||||||||.... ...|.||.=|| ..+ .-.
T Consensus 221 em----fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmD------GF~---~~~ 287 (596)
T COG0465 221 EM----FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMD------GFG---GNE 287 (596)
T ss_pred hh----hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhc------cCC---CCC
Confidence 65 66543 334555555555449999999996532 25555555553 221 113
Q ss_pred ceEEEEecCC
Q 001788 770 NVIFILTADW 779 (1013)
Q Consensus 770 n~iiI~TSN~ 779 (1013)
..|+|.+||.
T Consensus 288 gviviaaTNR 297 (596)
T COG0465 288 GVIVIAATNR 297 (596)
T ss_pred ceEEEecCCC
Confidence 4678888885
No 211
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1e-06 Score=104.34 Aligned_cols=123 Identities=7% Similarity=0.094 Sum_probs=107.4
Q ss_pred cCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc--cccchhhhHHHHHHHHHHHHhhcCCCCceEEEecchhHH
Q 001788 204 GGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD--FTCDKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKWL 279 (1013)
Q Consensus 204 vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~--~~~~rge~e~r~~~l~~~~~~~~~~~~~~il~idel~~l 279 (1013)
=|+| |||.+++.+|.. .++.|+++... |.+|-||-|.-+.++++.++++ .+.|||+|||..+
T Consensus 474 yGPPGC~KT~lAkalAne----------~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~----aP~IiFfDEiDsi 539 (693)
T KOG0730|consen 474 YGPPGCGKTLLAKALANE----------AGMNFLSVKGPELFSKYVGESERAIREVFRKARQV----APCIIFFDEIDAL 539 (693)
T ss_pred ECCCCcchHHHHHHHhhh----------hcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhc----CCeEEehhhHHhH
Confidence 8999 999999999987 88889999988 5789999999999999999995 7799999999999
Q ss_pred HhcccccCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEecCHHHHHHhhhcCCCCCCCC--CC-eeeecc
Q 001788 280 VEQQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATCETYLRCQVYHPSMENDW--DL-QAVPIA 356 (1013)
Q Consensus 280 ~~~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~IgatT~~~Y~k~~~~~~ale~~~--rf-q~v~v~ 356 (1013)
.++... .+ .+...++++.+-+-|.+.. ....|-+||||+... ..|||| -| || +.|.|+
T Consensus 540 ~~~R~g-~~----------~~v~~RVlsqLLtEmDG~e-~~k~V~ViAATNRpd-----~ID~AL--lRPGRlD~iiyVp 600 (693)
T KOG0730|consen 540 AGSRGG-SS----------SGVTDRVLSQLLTEMDGLE-ALKNVLVIAATNRPD-----MIDPAL--LRPGRLDRIIYVP 600 (693)
T ss_pred hhccCC-Cc----------cchHHHHHHHHHHHccccc-ccCcEEEEeccCChh-----hcCHHH--cCCcccceeEeec
Confidence 999852 22 2468899999999999888 688999999998755 679999 77 99 888998
Q ss_pred CCCC
Q 001788 357 AKTP 360 (1013)
Q Consensus 357 e~~~ 360 (1013)
- |+
T Consensus 601 l-PD 603 (693)
T KOG0730|consen 601 L-PD 603 (693)
T ss_pred C-cc
Confidence 7 64
No 212
>PF10431 ClpB_D2-small: C-terminal, D2-small domain, of ClpB protein ; InterPro: IPR019489 Most Clp ATPases form complexes with peptidase subunits and are involved in protein degradation, though some, such as ClpB, do not associate with peptidases and are involved in protein disaggregation []. This entry represents the C-terminal domain of Clp ATPases, often referred to as the D2-small domain, which forms a mixed alpha-beta structure. Compared with the adjacent AAA D1-small domain (IPR003959 from INTERPRO) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit, thereby providing enough binding energy to stabilise the functional assembly [].; PDB: 3HWS_A 3HTE_F 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 3PXI_A 1R6B_X ....
Probab=98.34 E-value=7.9e-07 Score=80.21 Aligned_cols=72 Identities=14% Similarity=0.148 Sum_probs=65.1
Q ss_pred CChhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHHHhCCC---CChHHHHHHHHHHHhHHHHHHHHcCCCCC
Q 001788 904 VDFGRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLVGGVW---LGRTGLEDWTEKVLVPSLHQLKLRLPNNA 975 (1013)
Q Consensus 904 l~~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~~~~~---~gar~l~~~ie~~l~~~l~~~~~~~~~~~ 975 (1013)
|+.+++.+|+..+|.++.+++..+++.|.++++++++|++.+| +|||+|+++|++.+.++|++.++.....+
T Consensus 1 L~~~~l~~I~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~il~~~~~~ 75 (81)
T PF10431_consen 1 LSEEDLEKIADLQLKKLNERLKEKGIELEFDDAVVDYLAEKGYDPEYGARPLRRIIEREIEPPLADAILSGKIKE 75 (81)
T ss_dssp --HHHHHHHHHSHHHHHHHHHHHTTEEEEE-HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHHHHHHHSCSCT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCeEEecHHHHHHHHHhCcccCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 5788999999999999999999899999999999999999986 89999999999999999999999987763
No 213
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.33 E-value=6.7e-06 Score=88.46 Aligned_cols=101 Identities=24% Similarity=0.347 Sum_probs=70.6
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCC-----------------CCcccccccch---hhhHHHHH--
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHE-----------------EPEVRVRGKTA---LDKIGEAV-- 725 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~-----------------~~~~g~~G~~~---~~~L~eal-- 725 (1013)
++|+||+|+||.+.+.+|-+.+||....-.+++...+.. .-.|...|+.. .+.+...+
T Consensus 37 ll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQ 116 (351)
T KOG2035|consen 37 LLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQ 116 (351)
T ss_pred EEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHh
Confidence 999999999999999999999999644444444332211 11222233322 22332222
Q ss_pred -------HcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCC
Q 001788 726 -------KRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADW 779 (1013)
Q Consensus 726 -------~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~ 779 (1013)
.++++.||+|-|+|++..+.|..|.+-||. .-+++.+|+.+|-
T Consensus 117 t~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEk-----------Ys~~~RlIl~cns 166 (351)
T KOG2035|consen 117 TQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEK-----------YSSNCRLILVCNS 166 (351)
T ss_pred hcchhhccccceEEEEEechHhhhHHHHHHHHHHHHH-----------HhcCceEEEEecC
Confidence 235788999999999999999999999983 2356779999984
No 214
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.32 E-value=8e-06 Score=99.42 Aligned_cols=131 Identities=15% Similarity=0.202 Sum_probs=83.0
Q ss_pred HHHHHHHhccccccHHHHHHHHHHHHHhhhhcCCCCC--CCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeC
Q 001788 623 KRLLKSLMEKVWWQQEAASAVATTVTQCKLGNGKRRG--AGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLG 700 (1013)
Q Consensus 623 ~~L~~~L~~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~--~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id 700 (1013)
..|.+.+--.|.|.+.+.++|+-++.- |..+..+ .--++|+.+|+.|.||+||+.|-+.+++...+. .+..--
T Consensus 278 ~~l~~SiaPsIyG~e~VKkAilLqLfg---Gv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~--vytsgk 352 (682)
T COG1241 278 DILIKSIAPSIYGHEDVKKAILLQLFG---GVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRG--VYTSGK 352 (682)
T ss_pred HHHHHHhcccccCcHHHHHHHHHHhcC---CCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCce--EEEccc
Confidence 345555667799999877776665542 2222111 113578889999999999999999999987532 122111
Q ss_pred CCCCCCCCccccccc---c-hhhh---HHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCC
Q 001788 701 PRRDHEEPEVRVRGK---T-ALDK---IGEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYG 763 (1013)
Q Consensus 701 ~s~~~~~~~~g~~G~---~-~~~~---L~eal~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g 763 (1013)
.+. ..|.... + ..+. =.+|+--...+|++|||+|||+..-+..|.++||.+.++-+++
T Consensus 353 gss-----~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKA 417 (682)
T COG1241 353 GSS-----AAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKA 417 (682)
T ss_pred ccc-----ccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeeccc
Confidence 111 1111100 0 0010 0122333445899999999999999999999999999886654
No 215
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.32 E-value=1.1e-06 Score=84.75 Aligned_cols=109 Identities=20% Similarity=0.154 Sum_probs=66.8
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCc------------ccccccchhhhHHHHHHcCCCEEEEE
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPE------------VRVRGKTALDKIGEAVKRNPFSVILL 735 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~------------~g~~G~~~~~~L~eal~~~p~~VV~l 735 (1013)
++|.||+|+|||++++.|+..+......++.++++....... ....+......+.+..+..+..|||+
T Consensus 5 ~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viii 84 (148)
T smart00382 5 ILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLIL 84 (148)
T ss_pred EEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999999986544577777765322110 00111112224445555555699999
Q ss_pred eCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCC
Q 001788 736 EDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADW 779 (1013)
Q Consensus 736 DEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~ 779 (1013)
||++++....+......... ...........+..+|+++|.
T Consensus 85 Dei~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 85 DEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred ECCcccCCHHHHHHHHhhhh---hHHHHHHHhcCCCEEEEEeCC
Confidence 99999988776665543111 000001112344568999884
No 216
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.32 E-value=3.1e-05 Score=85.34 Aligned_cols=71 Identities=10% Similarity=0.108 Sum_probs=49.2
Q ss_pred hHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHHHhCCCCChHHHHHHHHHHHhHHHH
Q 001788 890 DLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLVGGVWLGRTGLEDWTEKVLVPSLH 965 (1013)
Q Consensus 890 efl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~~~~~~gar~l~~~ie~~l~~~l~ 965 (1013)
.+..|+...+.+.|++.+++...+...+... +......+++++++.|.+.+-.-.|.+.......+..+..
T Consensus 178 ~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~-----g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~a~~ 248 (269)
T TIGR03015 178 QLRQRIIASCHLGPLDREETREYIEHRLERA-----GNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLSAFL 248 (269)
T ss_pred HHHhheeeeeeCCCCCHHHHHHHHHHHHHHc-----CCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHH
Confidence 5778887899999999999998887766432 1122346899999999987533335666666655554433
No 217
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=5.2e-06 Score=103.71 Aligned_cols=101 Identities=27% Similarity=0.375 Sum_probs=67.8
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccccccch--hhhHHHHHHcCCCEEEEEeCCCCC----
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGKTA--LDKIGEAVKRNPFSVILLEDIDEA---- 741 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G~~~--~~~L~eal~~~p~~VV~lDEIdka---- 741 (1013)
+||+||||+|||.+|++||..+-..+. -+.+.|..-.. .-.-++|..+ ...|++..++.-.+||||||||-+
T Consensus 302 vL~~GppGTGkTl~araLa~~~s~~~~-kisffmrkgaD-~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvr 379 (1080)
T KOG0732|consen 302 VLFHGPPGTGKTLMARALAAACSRGNR-KISFFMRKGAD-CLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVR 379 (1080)
T ss_pred eeecCCCCCchhHHHHhhhhhhccccc-ccchhhhcCch-hhccccCcHHHHHHHHHHHHhccCceEEeccccccccccc
Confidence 899999999999999999998864432 23344432111 0123677644 345677777777799999999944
Q ss_pred -------CHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCC
Q 001788 742 -------DMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADW 779 (1013)
Q Consensus 742 -------~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~ 779 (1013)
|..+...||-+|+ |- ++. ..+++|.+||.
T Consensus 380 SskqEqih~SIvSTLLaLmd-Gl--dsR------gqVvvigATnR 415 (1080)
T KOG0732|consen 380 SSKQEQIHASIVSTLLALMD-GL--DSR------GQVVVIGATNR 415 (1080)
T ss_pred cchHHHhhhhHHHHHHHhcc-CC--CCC------CceEEEcccCC
Confidence 4457778888885 22 233 34568888874
No 218
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.29 E-value=9.1e-06 Score=88.01 Aligned_cols=65 Identities=18% Similarity=0.195 Sum_probs=46.2
Q ss_pred hccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCC
Q 001788 630 MEKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRR 703 (1013)
Q Consensus 630 ~~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~ 703 (1013)
.+..+||-.|-++..-.+...+.|.-..+ .+|+.|+||+|||.+|..+++.+. ...||..+..++
T Consensus 39 s~GmVGQ~~AR~Aagvi~kmi~egkiaGr--------aiLiaG~pgtGKtAiAmg~sksLG-~~tpF~~i~gSE 103 (454)
T KOG2680|consen 39 SEGMVGQVKARKAAGVILKMIREGKIAGR--------AILIAGQPGTGKTAIAMGMSKSLG-DDTPFTSISGSE 103 (454)
T ss_pred cccchhhHHHHHHhHHHHHHHHcCcccce--------EEEEecCCCCCceeeeeehhhhhC-CCCceeeeecce
Confidence 45689998877665555555455431111 299999999999999999999984 556776666543
No 219
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.28 E-value=3.4e-06 Score=81.95 Aligned_cols=118 Identities=11% Similarity=0.162 Sum_probs=90.1
Q ss_pred cCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-cc-cchhhhHHHHHHHHHHHHhhcCCCCceEEEecchhHH
Q 001788 204 GGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-FT-CDKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKWL 279 (1013)
Q Consensus 204 vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~~-~~rge~e~r~~~l~~~~~~~~~~~~~~il~idel~~l 279 (1013)
.|+| |||.+++.+|+.+ +.+++.++.+ +. .+.++.+.++.++++.++.. .++.||||||++.+
T Consensus 4 ~G~~G~GKT~l~~~la~~l----------~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~vl~iDe~d~l 70 (132)
T PF00004_consen 4 HGPPGTGKTTLARALAQYL----------GFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKS---AKPCVLFIDEIDKL 70 (132)
T ss_dssp ESSTTSSHHHHHHHHHHHT----------TSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHT---STSEEEEEETGGGT
T ss_pred ECcCCCCeeHHHHHHHhhc----------cccccccccccccccccccccccccccccccccc---ccceeeeeccchhc
Confidence 8999 9999999999985 5779999999 54 58999999999999999884 23899999999999
Q ss_pred HhcccccCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEecCHHHHHHhhhcCCCCCCCCCCe
Q 001788 280 VEQQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATCETYLRCQVYHPSMENDWDLQ 351 (1013)
Q Consensus 280 ~~~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~IgatT~~~Y~k~~~~~~ale~~~rfq 351 (1013)
.+.... .. .......+..+.+.+.......+++.+|++|+..+ ..+|+|.. .||+
T Consensus 71 ~~~~~~-~~----------~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~-----~i~~~l~~-~rf~ 125 (132)
T PF00004_consen 71 FPKSQP-SS----------SSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPD-----KIDPALLR-SRFD 125 (132)
T ss_dssp SHHCST-SS----------SHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGG-----GSCHHHHS-TTSE
T ss_pred cccccc-cc----------ccccccccceeeecccccccccccceeEEeeCChh-----hCCHhHHh-CCCc
Confidence 988721 11 23455556677788877763236799999997722 34666633 6664
No 220
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=2.7e-06 Score=92.78 Aligned_cols=133 Identities=17% Similarity=0.148 Sum_probs=81.5
Q ss_pred ccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccc
Q 001788 633 VWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRV 712 (1013)
Q Consensus 633 ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~ 712 (1013)
+-|--+.+.++...|.-+.....--.+++-|+.--++++||+|+|||.+|+++|..+. ..|+.+-++.... +|
T Consensus 134 ~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg---~nfl~v~ss~lv~----ky 206 (388)
T KOG0651|consen 134 VGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMG---VNFLKVVSSALVD----KY 206 (388)
T ss_pred hCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcC---CceEEeeHhhhhh----hh
Confidence 4555555555555544322211001112223333399999999999999999999997 6777777775433 36
Q ss_pred cccch---hhhHHHHHHcCCCEEEEEeCCCC-----------CCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecC
Q 001788 713 RGKTA---LDKIGEAVKRNPFSVILLEDIDE-----------ADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778 (1013)
Q Consensus 713 ~G~~~---~~~L~eal~~~p~~VV~lDEIdk-----------a~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN 778 (1013)
.|... ...+..+ +..-.+|||+||||- ++..+|..|+++++.-.=.|.. ..+=+|+|||
T Consensus 207 iGEsaRlIRemf~yA-~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l------~rVk~ImatN 279 (388)
T KOG0651|consen 207 IGESARLIRDMFRYA-REVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTL------HRVKTIMATN 279 (388)
T ss_pred cccHHHHHHHHHHHH-hhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhc------ccccEEEecC
Confidence 66532 1222223 333349999999985 4678999999999732222222 2233899999
Q ss_pred C
Q 001788 779 W 779 (1013)
Q Consensus 779 ~ 779 (1013)
.
T Consensus 280 r 280 (388)
T KOG0651|consen 280 R 280 (388)
T ss_pred C
Confidence 5
No 221
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=98.26 E-value=1.1e-06 Score=72.40 Aligned_cols=52 Identities=23% Similarity=0.242 Sum_probs=45.0
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHcCCCChHHHHHHHHcCCCCCchhhHHHHHHHHHHHh
Q 001788 23 SIAEASRRNHGQTTPLHVAATLLASPSGYLRQACIKSHPNSSHPLQCRALELCFSVAL 80 (1013)
Q Consensus 23 A~~~A~~~~h~~itp~HLL~aLL~~~~gl~~~~l~~~~~d~~~~~~~~~Le~~~~~~L 80 (1013)
|+++|++++|.+|+|+|||+||+.+++|.+..++.++++| ...++..+...+
T Consensus 1 A~~~A~~~~~~~i~~eHlL~all~~~~~~~~~il~~~~id------~~~l~~~i~~~l 52 (53)
T PF02861_consen 1 AQELARERGHQYISPEHLLLALLEDPDSIAARILKKLGID------PEQLKAAIEKAL 52 (53)
T ss_dssp HHHHHHHTTBSSE-HHHHHHHHHHHTTSHHHHHHHHTTCH------HHHHHHHHHHHH
T ss_pred CHHHHHHcCCCcccHHHHHHHHHhhhhHHHHHHHHHcCCC------HHHHHHHHHHHh
Confidence 7899999999999999999999999999999999999998 366666666544
No 222
>PRK08116 hypothetical protein; Validated
Probab=98.25 E-value=1.5e-06 Score=96.25 Aligned_cols=105 Identities=14% Similarity=0.197 Sum_probs=68.4
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCccccccc--chhhhHHHHHHcCCCEEEEEeCC--CCCCH
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGK--TALDKIGEAVKRNPFSVILLEDI--DEADM 743 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G~--~~~~~L~eal~~~p~~VV~lDEI--dka~~ 743 (1013)
++|+|++|+|||.||.+|++.+.....+++.++.+++.......|.+. .....+.+.+.. ..+|+|||+ ++...
T Consensus 117 l~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~--~dlLviDDlg~e~~t~ 194 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVN--ADLLILDDLGAERDTE 194 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcC--CCEEEEecccCCCCCH
Confidence 999999999999999999999875556666666554221100011111 111233444433 369999999 67788
Q ss_pred HHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcch
Q 001788 744 VVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSL 784 (1013)
Q Consensus 744 ~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~ 784 (1013)
..+..|+.+|+... .. | .-+|+|||...+.+
T Consensus 195 ~~~~~l~~iin~r~-~~--~-------~~~IiTsN~~~~eL 225 (268)
T PRK08116 195 WAREKVYNIIDSRY-RK--G-------LPTIVTTNLSLEEL 225 (268)
T ss_pred HHHHHHHHHHHHHH-HC--C-------CCEEEECCCCHHHH
Confidence 88999999997542 21 1 12899999765443
No 223
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.19 E-value=3.8e-05 Score=88.72 Aligned_cols=66 Identities=20% Similarity=0.101 Sum_probs=50.9
Q ss_pred CChhhHHhhhcc--ceecCCCChhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHHHhCCCCChHHHHHHHHHHH
Q 001788 886 TPSQDLLNSVDS--AIVFKPVDFGRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLVGGVWLGRTGLEDWTEKVL 960 (1013)
Q Consensus 886 ~f~pefl~Rid~--iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~~~~~~gar~l~~~ie~~l 960 (1013)
.+.|.|.+|+.. ++...|++.+....|+.+... ...+.+++++++||+......-|.|+..++++.
T Consensus 224 ~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~---------~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~ 291 (408)
T COG0593 224 GLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAE---------DRGIEIPDEVLEFLAKRLDRNVRELEGALNRLD 291 (408)
T ss_pred cccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHH---------hcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 456788899864 777789999999999876322 235789999999999986666688888777654
No 224
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1.4e-05 Score=98.10 Aligned_cols=114 Identities=17% Similarity=0.264 Sum_probs=85.6
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCC-------CceeeeCCCC
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGAS-------PIMIPLGPRR 703 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~-------~~~i~id~s~ 703 (1013)
+-|||.++.|..+...+.|.+. ++ -+|.|+||||||.++.-||......+ ..++.+||+.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K----NN---------PvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~ 236 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK----NN---------PVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGS 236 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC----CC---------CeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHH
Confidence 4589999999998888864332 22 37899999999999999998887653 4467888875
Q ss_pred CCCCCcccccccch--hhhHHHHHHcCCCEEEEEeCCCCC---------CHHHHHHHHHHHHcceEe
Q 001788 704 DHEEPEVRVRGKTA--LDKIGEAVKRNPFSVILLEDIDEA---------DMVVRGNIKRAMERGRLV 759 (1013)
Q Consensus 704 ~~~~~~~g~~G~~~--~~~L~eal~~~p~~VV~lDEIdka---------~~~vq~~LL~~le~G~l~ 759 (1013)
...+ ..|.|.-+ ...+.+.+.+.+.-|+|||||+.+ ..+.-|.|.+++..|.+.
T Consensus 237 LvAG--akyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~ 301 (786)
T COG0542 237 LVAG--AKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELR 301 (786)
T ss_pred Hhcc--ccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeE
Confidence 5433 34666522 234666777777789999999853 267899999999999987
No 225
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.18 E-value=1.1e-05 Score=89.90 Aligned_cols=118 Identities=14% Similarity=0.178 Sum_probs=76.7
Q ss_pred ccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCC------CCCC
Q 001788 635 WQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRD------HEEP 708 (1013)
Q Consensus 635 GQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~------~~~~ 708 (1013)
+|..++..+..++.+.+..+ + +||.|| +||+.+|+.+|+.++.....-. -.|... ..+.
T Consensus 6 ~q~~~~~~L~~~~~~~rl~h-------A-----yLf~G~--~G~~~~A~~~A~~llC~~~~~~-~~Cg~C~~C~~i~~~~ 70 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRLNH-------A-----YLFSGD--FASFEMALFLAQSLFCEQKEGV-LPCGHCRSCRLIEQGE 70 (290)
T ss_pred HHHHHHHHHHHHHHcCCcce-------e-----eeeeCC--ccHHHHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHhcCC
Confidence 57788888888887554321 2 999996 6899999999999986531100 011111 0111
Q ss_pred ccc---------ccccchhhhHHHHHHcC----CCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEE
Q 001788 709 EVR---------VRGKTALDKIGEAVKRN----PFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFIL 775 (1013)
Q Consensus 709 ~~g---------~~G~~~~~~L~eal~~~----p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~ 775 (1013)
.|. .++.+....+.+.+... ++.|++||++|+|+...+|.||+.+|+-. .+++||+
T Consensus 71 HPD~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp-----------~~t~~iL 139 (290)
T PRK07276 71 FSDVTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQ-----------SEIYIFL 139 (290)
T ss_pred CCCeeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCCC-----------CCeEEEE
Confidence 111 12223334455555443 45799999999999999999999999622 4577888
Q ss_pred ecC
Q 001788 776 TAD 778 (1013)
Q Consensus 776 TSN 778 (1013)
+|+
T Consensus 140 ~t~ 142 (290)
T PRK07276 140 LTN 142 (290)
T ss_pred EEC
Confidence 885
No 226
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=2.9e-05 Score=86.98 Aligned_cols=65 Identities=23% Similarity=0.372 Sum_probs=48.3
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccccccchhhhHHHHH----HcCCCEEEEEeCCCCC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGKTALDKIGEAV----KRNPFSVILLEDIDEA 741 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal----~~~p~~VV~lDEIdka 741 (1013)
+|++||||||||.+|+++|+... ..||.+.++..++. ++|. ...+..++ .+-..++|||||||-+
T Consensus 130 iLL~GPpG~GKTmlAKA~Akeag---a~fInv~~s~lt~K----WfgE--~eKlv~AvFslAsKl~P~iIFIDEvds~ 198 (386)
T KOG0737|consen 130 ILLYGPPGTGKTMLAKAIAKEAG---ANFINVSVSNLTSK----WFGE--AQKLVKAVFSLASKLQPSIIFIDEVDSF 198 (386)
T ss_pred ceecCCCCchHHHHHHHHHHHcC---CCcceeeccccchh----hHHH--HHHHHHHHHhhhhhcCcceeehhhHHHH
Confidence 99999999999999999999876 78999999865442 4443 23333333 2223389999999854
No 227
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.11 E-value=2.5e-05 Score=86.78 Aligned_cols=98 Identities=12% Similarity=0.180 Sum_probs=66.4
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCccc-----------ccccchhhhHHHHHHcCC----CEE
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVR-----------VRGKTALDKIGEAVKRNP----FSV 732 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g-----------~~G~~~~~~L~eal~~~p----~~V 732 (1013)
+||.||+|+||+.+|..+|+.++....+- .|..+..+..|. ..+.+....+.+.+...| +.|
T Consensus 22 yLf~G~~G~Gk~~lA~~~A~~llC~~~~~---~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~kv 98 (290)
T PRK05917 22 IILHGQDLSNLSARAYELASLILKETSPE---AAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYKI 98 (290)
T ss_pred EeeECCCCCcHHHHHHHHHHHHhCCCCcc---HHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCceE
Confidence 99999999999999999999998643210 110000111111 123333444555555444 579
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCC
Q 001788 733 ILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADW 779 (1013)
Q Consensus 733 V~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~ 779 (1013)
++||++|+++.+.+|.||+.||+- -.+++||+.|+-
T Consensus 99 ~ii~~ad~mt~~AaNaLLK~LEEP-----------p~~~~fiL~~~~ 134 (290)
T PRK05917 99 YIIHEADRMTLDAISAFLKVLEDP-----------PQHGVIILTSAK 134 (290)
T ss_pred EEEechhhcCHHHHHHHHHHhhcC-----------CCCeEEEEEeCC
Confidence 999999999999999999999962 246778888763
No 228
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=1.3e-05 Score=96.50 Aligned_cols=122 Identities=8% Similarity=0.056 Sum_probs=99.0
Q ss_pred cCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-c-ccchhhhHHHHHHHHHHHHhhcCCCCceEEEecchhHH
Q 001788 204 GGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-F-TCDKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKWL 279 (1013)
Q Consensus 204 vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~-~~~rge~e~r~~~l~~~~~~~~~~~~~~il~idel~~l 279 (1013)
.|.| |||.+++.+|.. -+.+|++++.+ + ..|-||.|.++++++..+++ ..+.||||||+..+
T Consensus 282 ~GpPGtGKT~lAkava~~----------~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~----~~p~iiFiDEiDs~ 347 (494)
T COG0464 282 YGPPGTGKTLLAKAVALE----------SRSRFISVKGSELLSKWVGESEKNIRELFEKARK----LAPSIIFIDEIDSL 347 (494)
T ss_pred ECCCCCCHHHHHHHHHhh----------CCCeEEEeeCHHHhccccchHHHHHHHHHHHHHc----CCCcEEEEEchhhh
Confidence 9999 999999999973 68899999999 5 45999999999999999998 58999999999999
Q ss_pred HhcccccCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEecCHHHHHHhhhcCCCCCCCC--CCe-eeecc
Q 001788 280 VEQQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATCETYLRCQVYHPSMENDW--DLQ-AVPIA 356 (1013)
Q Consensus 280 ~~~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~IgatT~~~Y~k~~~~~~ale~~~--rfq-~v~v~ 356 (1013)
+.....+.+ ....++|.++...+...- ....|.+||||+.-. ..||++ .| ||. .+.|+
T Consensus 348 ~~~r~~~~~-----------~~~~r~~~~lL~~~d~~e-~~~~v~vi~aTN~p~-----~ld~a~--lR~gRfd~~i~v~ 408 (494)
T COG0464 348 ASGRGPSED-----------GSGRRVVGQLLTELDGIE-KAEGVLVIAATNRPD-----DLDPAL--LRPGRFDRLIYVP 408 (494)
T ss_pred hccCCCCCc-----------hHHHHHHHHHHHHhcCCC-ccCceEEEecCCCcc-----ccCHhh--cccCccceEeecC
Confidence 988753221 233577778877777666 466789999998755 568999 88 995 45666
Q ss_pred CCC
Q 001788 357 AKT 359 (1013)
Q Consensus 357 e~~ 359 (1013)
. |
T Consensus 409 ~-p 410 (494)
T COG0464 409 L-P 410 (494)
T ss_pred C-C
Confidence 5 5
No 229
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.06 E-value=5.8e-05 Score=86.32 Aligned_cols=135 Identities=18% Similarity=0.233 Sum_probs=80.5
Q ss_pred HhccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCcee--eeCCCCCCC
Q 001788 629 LMEKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMI--PLGPRRDHE 706 (1013)
Q Consensus 629 L~~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i--~id~s~~~~ 706 (1013)
+..-++||+.....+.-.- ..+ .++. +|+.|+.|+|||+++|+||..|... ...+ .|+|.-+.-
T Consensus 15 pf~aivGqd~lk~aL~l~a------v~P--~igg-----vLI~G~kGtaKSt~~Rala~LLp~~-~~V~gc~f~cdP~~P 80 (423)
T COG1239 15 PFTAIVGQDPLKLALGLNA------VDP--QIGG-----ALIAGEKGTAKSTLARALADLLPEI-EVVIGCPFNCDPDDP 80 (423)
T ss_pred chhhhcCchHHHHHHhhhh------ccc--ccce-----eEEecCCCccHHHHHHHHHHhCCcc-ceecCCCCCCCCCCh
Confidence 4566899986655543321 111 1333 8999999999999999999999632 1111 111111000
Q ss_pred ---------------------------CCccc-----ccccchhhhHHHHHH------------cCCCEEEEEeCCCCCC
Q 001788 707 ---------------------------EPEVR-----VRGKTALDKIGEAVK------------RNPFSVILLEDIDEAD 742 (1013)
Q Consensus 707 ---------------------------~~~~g-----~~G~~~~~~L~eal~------------~~p~~VV~lDEIdka~ 742 (1013)
..|.| .+|.- .+..+++ +...+|++|||+.-++
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGsl---Di~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~ 157 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSL---DIEKALEEGPKAFQPGLLARANRGILYVDEVNLLD 157 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhcccc---CHHHHHhcCccccCCcchhhccCCEEEEecccccc
Confidence 00000 11111 1122222 2334799999999999
Q ss_pred HHHHHHHHHHHHcc-eEecCCCeEee-cCceEEEEecCCC
Q 001788 743 MVVRGNIKRAMERG-RLVDSYGREIS-LGNVIFILTADWL 780 (1013)
Q Consensus 743 ~~vq~~LL~~le~G-~l~d~~g~~vd-~~n~iiI~TSN~g 780 (1013)
..+|+.||+++++| ....-.|..+. -.+.++|.|.|-.
T Consensus 158 d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPE 197 (423)
T COG1239 158 DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPE 197 (423)
T ss_pred HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCcc
Confidence 99999999999998 33334554333 2356788998853
No 230
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=3.5e-05 Score=89.09 Aligned_cols=99 Identities=19% Similarity=0.281 Sum_probs=64.6
Q ss_pred ccccccHHHHHHHHHHHHHhhh--h--cCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCC
Q 001788 631 EKVWWQQEAASAVATTVTQCKL--G--NGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHE 706 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~--g--~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~ 706 (1013)
..+.|.+.+...+...+..... . ..-+.|..+ +|+.||||+|||.++++||-... ..|..+..+....
T Consensus 153 ~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rg-----lLLfGPpgtGKtmL~~aiAsE~~---atff~iSassLts 224 (428)
T KOG0740|consen 153 DDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRG-----LLLFGPPGTGKTMLAKAIATESG---ATFFNISASSLTS 224 (428)
T ss_pred cCCcchhhHHHHhhhhhhhcccchHhhhccccccch-----hheecCCCCchHHHHHHHHhhhc---ceEeeccHHHhhh
Confidence 4566777776666666554322 1 122333333 99999999999999999999876 6677777664333
Q ss_pred CCcccccccch--hhhHHHHHHcCCCEEEEEeCCCCC
Q 001788 707 EPEVRVRGKTA--LDKIGEAVKRNPFSVILLEDIDEA 741 (1013)
Q Consensus 707 ~~~~g~~G~~~--~~~L~eal~~~p~~VV~lDEIdka 741 (1013)
. |+|..+ ...|+...+....+|||+||||++
T Consensus 225 K----~~Ge~eK~vralf~vAr~~qPsvifidEidsl 257 (428)
T KOG0740|consen 225 K----YVGESEKLVRALFKVARSLQPSVIFIDEIDSL 257 (428)
T ss_pred h----ccChHHHHHHHHHHHHHhcCCeEEEechhHHH
Confidence 3 666542 223444445555699999999864
No 231
>PRK06526 transposase; Provisional
Probab=98.03 E-value=3e-06 Score=93.05 Aligned_cols=103 Identities=10% Similarity=0.127 Sum_probs=62.7
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccccccchhhhHHHHHHc-CCCEEEEEeCCCCC--CHH
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKR-NPFSVILLEDIDEA--DMV 744 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~-~p~~VV~lDEIdka--~~~ 744 (1013)
++|+||+|+|||.+|.+|+..+......+..+.++++.......+ ..+.+...++. ....+|+|||++.. ++.
T Consensus 101 lll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~----~~~~~~~~l~~l~~~dlLIIDD~g~~~~~~~ 176 (254)
T PRK06526 101 VVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAH----HAGRLQAELVKLGRYPLLIVDEVGYIPFEPE 176 (254)
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHH----hcCcHHHHHHHhccCCEEEEcccccCCCCHH
Confidence 999999999999999999988764433333333332111000000 01122222222 33579999999976 478
Q ss_pred HHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchh
Q 001788 745 VRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLK 785 (1013)
Q Consensus 745 vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~ 785 (1013)
.++.|+++++...-. .-+|+|||...+...
T Consensus 177 ~~~~L~~li~~r~~~-----------~s~IitSn~~~~~w~ 206 (254)
T PRK06526 177 AANLFFQLVSSRYER-----------ASLIVTSNKPFGRWG 206 (254)
T ss_pred HHHHHHHHHHHHHhc-----------CCEEEEcCCCHHHHH
Confidence 888999999643211 127999998655443
No 232
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.02 E-value=4e-05 Score=90.40 Aligned_cols=141 Identities=14% Similarity=0.201 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCcee
Q 001788 618 DPDSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMI 697 (1013)
Q Consensus 618 d~e~l~~L~~~L~~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i 697 (1013)
+..-++.|...|--.|+|++.+...|.-.+.-...... ..+..-++|+.+++.|.||+||+.+.++.+..+.++ .++
T Consensus 332 ~~nly~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a-~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~--vYt 408 (764)
T KOG0480|consen 332 DENLYKNLVNSLFPSIYGHELVKAGILLSLFGGVHKSA-GEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRS--VYT 408 (764)
T ss_pred CchHHHHHHHhhCccccchHHHHhhHHHHHhCCccccC-CCCccccCCceEEEeCCCCccHHHHHHHHhccCCcc--eEe
Confidence 44557888889999999999877776665542111111 123445788999999999999999999998877632 222
Q ss_pred eeCCCCCCCCCcccccccchhhh-H--HHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCC
Q 001788 698 PLGPRRDHEEPEVRVRGKTALDK-I--GEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSY 762 (1013)
Q Consensus 698 ~id~s~~~~~~~~g~~G~~~~~~-L--~eal~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~ 762 (1013)
.-..+.-. |.....+..++.+. . .+|+--...+|..|||+|||+-.-|.+|+++||...+.-.+
T Consensus 409 sGkaSSaA-GLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaK 475 (764)
T KOG0480|consen 409 SGKASSAA-GLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAK 475 (764)
T ss_pred cCcccccc-cceEEEEecCCCCceeeecCcEEEccCceEEechhcccChHhHHHHHHHHHhheehhee
Confidence 22222110 00000111111111 1 12333345579999999999999999999999987776544
No 233
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.98 E-value=3.5e-05 Score=89.91 Aligned_cols=128 Identities=13% Similarity=0.131 Sum_probs=91.1
Q ss_pred CCcccccCCCcccCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-cc-cchhhhHHHHHHHHHHHHhhcCCCC
Q 001788 192 MNPRLQQAGGVCGGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-FT-CDKAGIVSKLKDLGALIETKFGNGD 267 (1013)
Q Consensus 192 ~np~l~~~~~~~vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~~-~~rge~e~r~~~l~~~~~~~~~~~~ 267 (1013)
.+.+| .|+| |||.+++.+|... +..++.++.+ +. .|.|+.+..++++++.++. ..
T Consensus 166 ~gvLL-------~GppGtGKT~lAkaia~~~----------~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~ 224 (389)
T PRK03992 166 KGVLL-------YGPPGTGKTLLAKAVAHET----------NATFIRVVGSELVQKFIGEGARLVRELFELARE----KA 224 (389)
T ss_pred CceEE-------ECCCCCChHHHHHHHHHHh----------CCCEEEeehHHHhHhhccchHHHHHHHHHHHHh----cC
Confidence 35677 9999 9999999999873 4568888877 54 5889999999999999887 57
Q ss_pred ceEEEecchhHHHhcccccCCCCCCCcchhhhhHHHHHHHHHHHHH---hhhcCCCCceEEEEecCHHHHHHhhhcCCCC
Q 001788 268 GVILDLGDLKWLVEQQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLV---ARFGGGGGRLWLIGTATCETYLRCQVYHPSM 344 (1013)
Q Consensus 268 ~~il~idel~~l~~~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~ll---k~~~~~~g~~~~IgatT~~~Y~k~~~~~~al 344 (1013)
+.||||||++.+.+....... .+...+...+..+| .... ..+.+++||||+.-. ..||+|
T Consensus 225 p~IlfiDEiD~l~~~r~~~~~-----------~~~~~~~~~l~~lL~~ld~~~-~~~~v~VI~aTn~~~-----~ld~al 287 (389)
T PRK03992 225 PSIIFIDEIDAIAAKRTDSGT-----------SGDREVQRTLMQLLAEMDGFD-PRGNVKIIAATNRID-----ILDPAI 287 (389)
T ss_pred CeEEEEechhhhhcccccCCC-----------CccHHHHHHHHHHHHhccccC-CCCCEEEEEecCChh-----hCCHHH
Confidence 899999999999876532111 01111111233444 3333 467999999998754 467888
Q ss_pred CCCC--CC-eeeeccCCCC
Q 001788 345 ENDW--DL-QAVPIAAKTP 360 (1013)
Q Consensus 345 e~~~--rf-q~v~v~e~~~ 360 (1013)
-| || ..|.|+. |+
T Consensus 288 --lRpgRfd~~I~v~~-P~ 303 (389)
T PRK03992 288 --LRPGRFDRIIEVPL-PD 303 (389)
T ss_pred --cCCccCceEEEECC-CC
Confidence 66 78 4577777 64
No 234
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.97 E-value=8.7e-05 Score=83.29 Aligned_cols=93 Identities=9% Similarity=0.099 Sum_probs=63.6
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCC--------C--ceeeeCCCCCCCCCcccccccchhhhHHHHHHc-----CCCEE
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGAS--------P--IMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKR-----NPFSV 732 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~--------~--~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~-----~p~~V 732 (1013)
+||+|+.|.||+.+|+.+++.++... . .++.+|.. + +..+.+....+.+.+.. .++.|
T Consensus 21 YLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~----g---~~i~vd~Ir~l~~~~~~~~~~~~~~Kv 93 (299)
T PRK07132 21 FLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF----D---KDLSKSEFLSAINKLYFSSFVQSQKKI 93 (299)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC----C---CcCCHHHHHHHHHHhccCCcccCCceE
Confidence 99999999999999999999985421 0 12222210 0 01222233334444332 35689
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecC
Q 001788 733 ILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778 (1013)
Q Consensus 733 V~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN 778 (1013)
++||++|+++...+|.||+.||+- -.+++||++|+
T Consensus 94 vII~~~e~m~~~a~NaLLK~LEEP-----------p~~t~~il~~~ 128 (299)
T PRK07132 94 LIIKNIEKTSNSLLNALLKTIEEP-----------PKDTYFLLTTK 128 (299)
T ss_pred EEEecccccCHHHHHHHHHHhhCC-----------CCCeEEEEEeC
Confidence 999999999999999999999962 14677888775
No 235
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=1.3e-05 Score=89.29 Aligned_cols=131 Identities=11% Similarity=0.121 Sum_probs=99.7
Q ss_pred cCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-cc-cchhhhHHHHHHHHHHHHhhcCCCCceEEEecchhHH
Q 001788 204 GGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-FT-CDKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKWL 279 (1013)
Q Consensus 204 vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~~-~~rge~e~r~~~l~~~~~~~~~~~~~~il~idel~~l 279 (1013)
-|+| |||-+++++|.. -++.|+.+-.+ |. .|-||=-.=+.++++.+++ +++.|||||||..+
T Consensus 191 YGPPGTGKTLLAkAVA~~----------T~AtFIrvvgSElVqKYiGEGaRlVRelF~lAre----kaPsIIFiDEIDAI 256 (406)
T COG1222 191 YGPPGTGKTLLAKAVANQ----------TDATFIRVVGSELVQKYIGEGARLVRELFELARE----KAPSIIFIDEIDAI 256 (406)
T ss_pred eCCCCCcHHHHHHHHHhc----------cCceEEEeccHHHHHHHhccchHHHHHHHHHHhh----cCCeEEEEechhhh
Confidence 9999 999999999988 78999999888 65 4999988888999999999 79999999999998
Q ss_pred HhcccccCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEecCHHHHHHhhhcCCCCCCCCCC-eeeeccCC
Q 001788 280 VEQQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATCETYLRCQVYHPSMENDWDL-QAVPIAAK 358 (1013)
Q Consensus 280 ~~~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~IgatT~~~Y~k~~~~~~ale~~~rf-q~v~v~e~ 358 (1013)
....-.... +.-++.+ +-.+|+-|=|.++- .+|.|++|+||+.-. -.||||=..-|| ..|.+|-
T Consensus 257 g~kR~d~~t----~gDrEVQ----RTmleLL~qlDGFD-~~~nvKVI~ATNR~D-----~LDPALLRPGR~DRkIEfpl- 321 (406)
T COG1222 257 GAKRFDSGT----SGDREVQ----RTMLELLNQLDGFD-PRGNVKVIMATNRPD-----ILDPALLRPGRFDRKIEFPL- 321 (406)
T ss_pred hcccccCCC----CchHHHH----HHHHHHHHhccCCC-CCCCeEEEEecCCcc-----ccChhhcCCCcccceeecCC-
Confidence 877633111 0111222 22236777777777 799999999998733 368888666677 6777875
Q ss_pred CCCCC
Q 001788 359 TPLSG 363 (1013)
Q Consensus 359 ~~~~g 363 (1013)
|+.+|
T Consensus 322 Pd~~g 326 (406)
T COG1222 322 PDEEG 326 (406)
T ss_pred CCHHH
Confidence 64333
No 236
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=7.2e-06 Score=94.55 Aligned_cols=97 Identities=19% Similarity=0.376 Sum_probs=66.5
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccccccchh---hhHHHHHHc----C---CCEEEEEeC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGKTAL---DKIGEAVKR----N---PFSVILLED 737 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G~~~~---~~L~eal~~----~---p~~VV~lDE 737 (1013)
+|++||||||||.+||.|.+.|..++..++ |..+... .|+|.++. ..+.+|-.. . .--||+|||
T Consensus 259 iLLyGPPGTGKTLiARqIGkMLNArePKIV--NGPeIL~----KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDE 332 (744)
T KOG0741|consen 259 ILLYGPPGTGKTLIARQIGKMLNAREPKIV--NGPEILN----KYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDE 332 (744)
T ss_pred EEEECCCCCChhHHHHHHHHHhcCCCCccc--CcHHHHH----HhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehh
Confidence 999999999999999999999987655444 3322211 37877642 223333211 1 123899999
Q ss_pred CCC-------------CCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCC
Q 001788 738 IDE-------------ADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADW 779 (1013)
Q Consensus 738 Idk-------------a~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~ 779 (1013)
||- .|..|.|.||.-|+ |. -.+.|.++|--||.
T Consensus 333 iDAICKqRGS~~g~TGVhD~VVNQLLsKmD-GV--------eqLNNILVIGMTNR 378 (744)
T KOG0741|consen 333 IDAICKQRGSMAGSTGVHDTVVNQLLSKMD-GV--------EQLNNILVIGMTNR 378 (744)
T ss_pred hHHHHHhcCCCCCCCCccHHHHHHHHHhcc-cH--------HhhhcEEEEeccCc
Confidence 984 45678899988874 21 23678889999995
No 237
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.96 E-value=1.1e-05 Score=87.78 Aligned_cols=107 Identities=10% Similarity=0.124 Sum_probs=66.3
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccccc-cchhhhHHHHHHcCCCEEEEEeCCCCCC--HH
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRG-KTALDKIGEAVKRNPFSVILLEDIDEAD--MV 744 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G-~~~~~~L~eal~~~p~~VV~lDEIdka~--~~ 744 (1013)
++|+|++|||||.||.+|+..+......++.+++++....-...|.. ......+.+.+. ..++|+|||++... .-
T Consensus 102 ~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~s~~ 179 (244)
T PRK07952 102 FIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTESRY 179 (244)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCCCHH
Confidence 99999999999999999999987655566666654432110000110 001123444444 35799999997764 33
Q ss_pred HHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchhh
Q 001788 745 VRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLKF 786 (1013)
Q Consensus 745 vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~~ 786 (1013)
....|.++++. ++... .-+|+|||...+.+..
T Consensus 180 ~~~~l~~Ii~~-Ry~~~---------~~tiitSNl~~~~l~~ 211 (244)
T PRK07952 180 EKVIINQIVDR-RSSSK---------RPTGMLTNSNMEEMTK 211 (244)
T ss_pred HHHHHHHHHHH-HHhCC---------CCEEEeCCCCHHHHHH
Confidence 45577788865 33211 1179999987766543
No 238
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.96 E-value=3.6e-05 Score=91.81 Aligned_cols=122 Identities=11% Similarity=0.116 Sum_probs=88.9
Q ss_pred cCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-c-ccchhhhHHHHHHHHHHHHhhcCCCCceEEEecchhHH
Q 001788 204 GGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-F-TCDKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKWL 279 (1013)
Q Consensus 204 vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~-~~~rge~e~r~~~l~~~~~~~~~~~~~~il~idel~~l 279 (1013)
.|+| |||.+++.+|.. -++.++.++.+ + .+|.|+-|.+++++++.++. ..+.|||||||..+
T Consensus 265 ~GPpGTGKTllAkaiA~e----------~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~----~~P~IL~IDEID~~ 330 (489)
T CHL00195 265 VGIQGTGKSLTAKAIAND----------WQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEA----LSPCILWIDEIDKA 330 (489)
T ss_pred ECCCCCcHHHHHHHHHHH----------hCCCEEEEEhHHhcccccChHHHHHHHHHHHHHh----cCCcEEEehhhhhh
Confidence 9999 999999999987 35669999998 5 56999999999999999988 58999999999988
Q ss_pred HhcccccCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEecCHHHHHHhhhcCCCCCCCC--CC-eeeecc
Q 001788 280 VEQQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATCETYLRCQVYHPSMENDW--DL-QAVPIA 356 (1013)
Q Consensus 280 ~~~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~IgatT~~~Y~k~~~~~~ale~~~--rf-q~v~v~ 356 (1013)
...... .+ . .+...+++..+.+.|.. ....+.+||||+.-. ..||+| -| || ..+.|+
T Consensus 331 ~~~~~~-~~--d-------~~~~~rvl~~lL~~l~~---~~~~V~vIaTTN~~~-----~Ld~al--lR~GRFD~~i~v~ 390 (489)
T CHL00195 331 FSNSES-KG--D-------SGTTNRVLATFITWLSE---KKSPVFVVATANNID-----LLPLEI--LRKGRFDEIFFLD 390 (489)
T ss_pred hccccC-CC--C-------chHHHHHHHHHHHHHhc---CCCceEEEEecCChh-----hCCHHH--hCCCcCCeEEEeC
Confidence 764321 11 0 12334444444444442 245789999997644 468888 66 88 455666
Q ss_pred CCCC
Q 001788 357 AKTP 360 (1013)
Q Consensus 357 e~~~ 360 (1013)
- |+
T Consensus 391 l-P~ 393 (489)
T CHL00195 391 L-PS 393 (489)
T ss_pred C-cC
Confidence 5 53
No 239
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.94 E-value=3.2e-05 Score=87.52 Aligned_cols=122 Identities=11% Similarity=-0.008 Sum_probs=91.0
Q ss_pred ccCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-c-ccchhhhHHHHHHHHHHHHhhc-CCCCceEEEecchh
Q 001788 203 CGGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-F-TCDKAGIVSKLKDLGALIETKF-GNGDGVILDLGDLK 277 (1013)
Q Consensus 203 ~vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~-~~~rge~e~r~~~l~~~~~~~~-~~~~~~il~idel~ 277 (1013)
+-|+| |||.+++.+|.. -|+.++.++.+ + .+|-||-|.+|.++++.+.+.. ..+++.|||||||.
T Consensus 153 L~GPPGcGKTllAraiA~e----------lg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEID 222 (413)
T PLN00020 153 IWGGKGQGKSFQCELVFKK----------MGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLD 222 (413)
T ss_pred eeCCCCCCHHHHHHHHHHH----------cCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhh
Confidence 37888 999999999988 47779999999 5 5799999999999999998642 12579999999999
Q ss_pred HHHhcccccCCCCCCCcchhhhhHHHHHH-HHHHHHHhhh-----------cCCCCceEEEEecCHHHHHHhhhcCCCCC
Q 001788 278 WLVEQQVTSFGVPNSGTLQQQQQVLAEVV-AEIGKLVARF-----------GGGGGRLWLIGTATCETYLRCQVYHPSME 345 (1013)
Q Consensus 278 ~l~~~~~~~~g~~~~~~~~~~~~~~~~~V-~e~~~llk~~-----------~~~~g~~~~IgatT~~~Y~k~~~~~~ale 345 (1013)
.+++...... +....++| +.+.|++... -+..++|-+|+||+--. ..||+|
T Consensus 223 A~~g~r~~~~-----------~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd-----~LDpAL- 285 (413)
T PLN00020 223 AGAGRFGTTQ-----------YTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFS-----TLYAPL- 285 (413)
T ss_pred hcCCCCCCCC-----------cchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcc-----cCCHhH-
Confidence 9988753211 22334555 6888887631 01356899999995422 467888
Q ss_pred CCC--CCee
Q 001788 346 NDW--DLQA 352 (1013)
Q Consensus 346 ~~~--rfq~ 352 (1013)
-| ||..
T Consensus 286 -lRpGRfDk 293 (413)
T PLN00020 286 -IRDGRMEK 293 (413)
T ss_pred -cCCCCCCc
Confidence 55 7754
No 240
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=4.4e-05 Score=88.37 Aligned_cols=132 Identities=12% Similarity=0.153 Sum_probs=94.4
Q ss_pred CCcccccCCCcccCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-cc-cchhhhHHHHHHHHHHHHhhcCCCC
Q 001788 192 MNPRLQQAGGVCGGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-FT-CDKAGIVSKLKDLGALIETKFGNGD 267 (1013)
Q Consensus 192 ~np~l~~~~~~~vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~~-~~rge~e~r~~~l~~~~~~~~~~~~ 267 (1013)
.-.+| ||+| |||.+++++|-. .|+-|+.-.-+ |- +|-|-=..|+.+|++.++. ..
T Consensus 338 KGVLL-------vGPPGTGKTlLARAvAGE----------A~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~----~A 396 (752)
T KOG0734|consen 338 KGVLL-------VGPPGTGKTLLARAVAGE----------AGVPFFYASGSEFDEMFVGVGARRVRDLFAAAKA----RA 396 (752)
T ss_pred CceEE-------eCCCCCchhHHHHHhhcc----------cCCCeEeccccchhhhhhcccHHHHHHHHHHHHh----cC
Confidence 35678 9999 999988888733 56668877766 73 6777778899999999998 58
Q ss_pred ceEEEecchhHHHhcccccCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcC--CCCceEEEEecCHHHHHHhhhcCCCCC
Q 001788 268 GVILDLGDLKWLVEQQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGG--GGGRLWLIGTATCETYLRCQVYHPSME 345 (1013)
Q Consensus 268 ~~il~idel~~l~~~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~--~~g~~~~IgatT~~~Y~k~~~~~~ale 345 (1013)
|.|||||||..+-+..... +.. |+=.-+-.||-.+-+ -.-.|-+||||++-+ ..|+||-
T Consensus 397 PcIIFIDEiDavG~kR~~~-------------~~~-y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe-----~LD~AL~ 457 (752)
T KOG0734|consen 397 PCIIFIDEIDAVGGKRNPS-------------DQH-YAKQTLNQLLVEMDGFKQNEGIIVIGATNFPE-----ALDKALT 457 (752)
T ss_pred CeEEEEechhhhcccCCcc-------------HHH-HHHHHHHHHHHHhcCcCcCCceEEEeccCChh-----hhhHHhc
Confidence 9999999999776655321 111 444456667665542 244689999999866 5677775
Q ss_pred CCCCC-eeeeccCCCCCCCC
Q 001788 346 NDWDL-QAVPIAAKTPLSGM 364 (1013)
Q Consensus 346 ~~~rf-q~v~v~e~~~~~gl 364 (1013)
..-|| ..|.||- |+..|-
T Consensus 458 RPGRFD~~v~Vp~-PDv~GR 476 (752)
T KOG0734|consen 458 RPGRFDRHVTVPL-PDVRGR 476 (752)
T ss_pred CCCccceeEecCC-CCcccH
Confidence 55677 3477777 765543
No 241
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.93 E-value=2.8e-05 Score=92.38 Aligned_cols=53 Identities=23% Similarity=0.382 Sum_probs=45.9
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhc
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVS 690 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~ 690 (1013)
+.++|++++++.|...+..+..++..+++ .++|.||||+|||+||+.|++.+-
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~-------IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQ-------ILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCc-------eEEEecCCCCCchHHHHHHHHHHH
Confidence 34799999999999999888888765443 399999999999999999999874
No 242
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.91 E-value=0.00011 Score=88.16 Aligned_cols=77 Identities=21% Similarity=0.371 Sum_probs=60.4
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccccccchhhhHHHHHHc--------CCCEEEEEeCC
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKR--------NPFSVILLEDI 738 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~--------~p~~VV~lDEI 738 (1013)
.+||+||+|-|||+||+.+|+..+ ..++.+|+|+. ..+......+..++.. +| ..+++|||
T Consensus 328 ilLL~GppGlGKTTLAHViAkqaG---YsVvEINASDe-------Rt~~~v~~kI~~avq~~s~l~adsrP-~CLViDEI 396 (877)
T KOG1969|consen 328 ILLLCGPPGLGKTTLAHVIAKQAG---YSVVEINASDE-------RTAPMVKEKIENAVQNHSVLDADSRP-VCLVIDEI 396 (877)
T ss_pred eEEeecCCCCChhHHHHHHHHhcC---ceEEEeccccc-------ccHHHHHHHHHHHHhhccccccCCCc-ceEEEecc
Confidence 499999999999999999999876 78899999863 2223334455555543 34 34679999
Q ss_pred CCCCHHHHHHHHHHHH
Q 001788 739 DEADMVVRGNIKRAME 754 (1013)
Q Consensus 739 dka~~~vq~~LL~~le 754 (1013)
|-+++...+.|+.++.
T Consensus 397 DGa~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 397 DGAPRAAVDVILSLVK 412 (877)
T ss_pred cCCcHHHHHHHHHHHH
Confidence 9999999999999996
No 243
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.89 E-value=2.3e-05 Score=74.52 Aligned_cols=94 Identities=15% Similarity=0.286 Sum_probs=60.1
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCC-----CceeeeCCCCCCCCCcccccccchhhhHHHHHHcCCCEEEEEeCCCCCC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGAS-----PIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKRNPFSVILLEDIDEAD 742 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~-----~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~~p~~VV~lDEIdka~ 742 (1013)
+.|+||+|+|||.+|+.|++.+.... ..+...+. ...+.+.-. ...|+++||+....
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~----------------~~~~w~gY~--~q~vvi~DD~~~~~ 62 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNP----------------GDKFWDGYQ--GQPVVIIDDFGQDN 62 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCC----------------ccchhhccC--CCcEEEEeecCccc
Confidence 46899999999999999998886321 11111111 111111111 22699999998887
Q ss_pred HH----HHHHHHHHHHcceEecC----CCeEeecCceEEEEecCC
Q 001788 743 MV----VRGNIKRAMERGRLVDS----YGREISLGNVIFILTADW 779 (1013)
Q Consensus 743 ~~----vq~~LL~~le~G~l~d~----~g~~vd~~n~iiI~TSN~ 779 (1013)
.. ....|++++..-.+.-. ..+..-|.-.+||+|||.
T Consensus 63 ~~~~~~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~~vi~tsN~ 107 (107)
T PF00910_consen 63 DGYNYSDESELIRLISSNPFQPNMADLEDKGTPFNSKLVIITSNF 107 (107)
T ss_pred cccchHHHHHHHHHHhcCCcccccccHhhCCCccCCCEEEEcCCC
Confidence 54 67788999988776642 112245555688999983
No 244
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.89 E-value=3e-06 Score=88.17 Aligned_cols=105 Identities=15% Similarity=0.211 Sum_probs=64.7
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccccccchhhhHHHHHHcCCCEEEEEeCCCCC--CHHH
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKRNPFSVILLEDIDEA--DMVV 745 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~~p~~VV~lDEIdka--~~~v 745 (1013)
++|+||+|+|||.+|.+|++.+.........+++++........+ .......+...+... .+++|||+... +...
T Consensus 50 l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~-~~~~~~~~~~~l~~~--dlLilDDlG~~~~~~~~ 126 (178)
T PF01695_consen 50 LILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSR-SDGSYEELLKRLKRV--DLLILDDLGYEPLSEWE 126 (178)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCH-CCTTHCHHHHHHHTS--SCEEEETCTSS---HHH
T ss_pred EEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccc-cccchhhhcCccccc--cEecccccceeeecccc
Confidence 999999999999999999988876655555555543211100001 111223445555543 68999999765 4567
Q ss_pred HHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchhh
Q 001788 746 RGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLKF 786 (1013)
Q Consensus 746 q~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~~ 786 (1013)
.+.|+++|+... . +.. .|+|||...+.+..
T Consensus 127 ~~~l~~ii~~R~-~---------~~~-tIiTSN~~~~~l~~ 156 (178)
T PF01695_consen 127 AELLFEIIDERY-E---------RKP-TIITSNLSPSELEE 156 (178)
T ss_dssp HHCTHHHHHHHH-H---------T-E-EEEEESS-HHHHHT
T ss_pred cccchhhhhHhh-c---------ccC-eEeeCCCchhhHhh
Confidence 788899997543 1 112 57799987655443
No 245
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.88 E-value=1.9e-05 Score=86.79 Aligned_cols=106 Identities=14% Similarity=0.161 Sum_probs=67.3
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccccccchhhhHHHHHHcCCCEEEEEeCCCC--CCHHH
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKRNPFSVILLEDIDE--ADMVV 745 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~~p~~VV~lDEIdk--a~~~v 745 (1013)
++|+||+|||||.||-+|+..+......+..+...+....-...+........|...+ ....|++|||+.. .+...
T Consensus 108 l~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 108 LVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCccCCHHH
Confidence 9999999999999999999999844455555555543221000111111122333333 3347999999987 55667
Q ss_pred HHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchhh
Q 001788 746 RGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLKF 786 (1013)
Q Consensus 746 q~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~~ 786 (1013)
.+.|+++|..-.-. .. .|+|||...+.+..
T Consensus 186 ~~~~~q~I~~r~~~----------~~-~~~tsN~~~~~~~~ 215 (254)
T COG1484 186 ADLLFQLISRRYES----------RS-LIITSNLSFGEWDE 215 (254)
T ss_pred HHHHHHHHHHHHhh----------cc-ceeecCCChHHHHh
Confidence 88888888654322 12 29999986655544
No 246
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.88 E-value=9.5e-06 Score=92.59 Aligned_cols=151 Identities=13% Similarity=0.203 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHhhhhcCCCCC--CCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCcee
Q 001788 620 DSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLGNGKRRG--AGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMI 697 (1013)
Q Consensus 620 e~l~~L~~~L~~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~--~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i 697 (1013)
+-+..|.+.+--.|+|.+.+...|.-.+.. |.....+ ...+.+.-+||+|.||+||+.|.+.+++... ..+
T Consensus 13 ~~~~~l~~s~aP~i~g~~~iK~aill~L~~---~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~p----r~v 85 (331)
T PF00493_consen 13 NIFDRLANSIAPSIYGHEDIKKAILLQLFG---GVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAP----RSV 85 (331)
T ss_dssp THHHCCHHHCSSTTTT-HHHHHHHCCCCTT-----SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-S----SEE
T ss_pred cHHHHHHHHhCCcCcCcHHHHHHHHHHHHh---ccccccccccccccccceeeccchhhhHHHHHHHHHhhCC----ceE
Confidence 455667778888899988765554443321 2111111 1123455699999999999999998766553 223
Q ss_pred eeCCCCCC-CCCcccccccc--hhhhH--HHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCe---EeecC
Q 001788 698 PLGPRRDH-EEPEVRVRGKT--ALDKI--GEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGR---EISLG 769 (1013)
Q Consensus 698 ~id~s~~~-~~~~~g~~G~~--~~~~L--~eal~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~---~vd~~ 769 (1013)
......-. .+-.. .+..+ .++.. .+++-...++|++|||+||++.+.+..|+++||.|.++-.++. ....
T Consensus 86 ~~~g~~~s~~gLta-~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~a- 163 (331)
T PF00493_consen 86 YTSGKGSSAAGLTA-SVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNA- 163 (331)
T ss_dssp EEECCGSTCCCCCE-EECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE--
T ss_pred EECCCCcccCCccc-eeccccccceeEEeCCchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccc-
Confidence 22222110 01000 01111 01100 1223334458999999999999999999999999999876642 2232
Q ss_pred ceEEEEecCC
Q 001788 770 NVIFILTADW 779 (1013)
Q Consensus 770 n~iiI~TSN~ 779 (1013)
++-|++++|-
T Consensus 164 r~svlaa~NP 173 (331)
T PF00493_consen 164 RCSVLAAANP 173 (331)
T ss_dssp --EEEEEE--
T ss_pred hhhhHHHHhh
Confidence 3447888874
No 247
>PF13173 AAA_14: AAA domain
Probab=97.87 E-value=3.7e-05 Score=75.36 Aligned_cols=81 Identities=16% Similarity=0.223 Sum_probs=55.1
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccccccchhhhHHHHHHc---CCCEEEEEeCCCCCCH
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKR---NPFSVILLEDIDEADM 743 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~---~p~~VV~lDEIdka~~ 743 (1013)
++++.||.|||||++++.+++.+. ....++.+|+.+... ....... +.+.+.+ ....+||||||.+++
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~i~iDEiq~~~- 74 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRD------RRLADPD-LLEYFLELIKPGKKYIFIDEIQYLP- 74 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHH------HHHhhhh-hHHHHHHhhccCCcEEEEehhhhhc-
Confidence 499999999999999999998876 445667777764211 0100000 2232222 245799999999996
Q ss_pred HHHHHHHHHHHcc
Q 001788 744 VVRGNIKRAMERG 756 (1013)
Q Consensus 744 ~vq~~LL~~le~G 756 (1013)
++...+..+.+++
T Consensus 75 ~~~~~lk~l~d~~ 87 (128)
T PF13173_consen 75 DWEDALKFLVDNG 87 (128)
T ss_pred cHHHHHHHHHHhc
Confidence 6778888888754
No 248
>PRK08181 transposase; Validated
Probab=97.86 E-value=1.1e-05 Score=89.24 Aligned_cols=104 Identities=15% Similarity=0.166 Sum_probs=63.6
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccccccchhhhHHHHHHcCCCEEEEEeCCCCCC--HHH
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKRNPFSVILLEDIDEAD--MVV 745 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~~p~~VV~lDEIdka~--~~v 745 (1013)
++|+||+|+|||.||.+|+..+......++.+.+.+............ ....+...+. ...+|+|||++..+ ...
T Consensus 109 lll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~-~~~~~l~~l~--~~dLLIIDDlg~~~~~~~~ 185 (269)
T PRK08181 109 LLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARREL-QLESAIAKLD--KFDLLILDDLAYVTKDQAE 185 (269)
T ss_pred EEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCC-cHHHHHHHHh--cCCEEEEeccccccCCHHH
Confidence 999999999999999999988765544455555443211100000000 1112223332 34699999998764 566
Q ss_pred HHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchh
Q 001788 746 RGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLK 785 (1013)
Q Consensus 746 q~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~ 785 (1013)
+..|+++++... .. .+ +|+|||.....+.
T Consensus 186 ~~~Lf~lin~R~-~~-------~s---~IiTSN~~~~~w~ 214 (269)
T PRK08181 186 TSVLFELISARY-ER-------RS---ILITANQPFGEWN 214 (269)
T ss_pred HHHHHHHHHHHH-hC-------CC---EEEEcCCCHHHHH
Confidence 778999997432 11 01 7999998765544
No 249
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.83 E-value=3e-05 Score=88.14 Aligned_cols=106 Identities=12% Similarity=0.224 Sum_probs=66.8
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCccc-ccccchhhhHHHHHHcCCCEEEEEeCC--CCCCHH
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVR-VRGKTALDKIGEAVKRNPFSVILLEDI--DEADMV 744 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g-~~G~~~~~~L~eal~~~p~~VV~lDEI--dka~~~ 744 (1013)
++|+||+|+|||.||.+||+.+......++.+++.++....... +..........+.+.. ..+|+||++ +..++.
T Consensus 186 Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~--~DLLIIDDlG~e~~t~~ 263 (329)
T PRK06835 186 LLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLIN--CDLLIIDDLGTEKITEF 263 (329)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhcc--CCEEEEeccCCCCCCHH
Confidence 99999999999999999999987665666666655432110000 0000001111233332 369999999 555778
Q ss_pred HHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchh
Q 001788 745 VRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLK 785 (1013)
Q Consensus 745 vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~ 785 (1013)
.+..|+.+++...... + -+|+|||...+.+.
T Consensus 264 ~~~~Lf~iin~R~~~~---k-------~tIiTSNl~~~el~ 294 (329)
T PRK06835 264 SKSELFNLINKRLLRQ---K-------KMIISTNLSLEELL 294 (329)
T ss_pred HHHHHHHHHHHHHHCC---C-------CEEEECCCCHHHHH
Confidence 8889999997543221 1 17999998765543
No 250
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.83 E-value=6.5e-05 Score=82.91 Aligned_cols=129 Identities=13% Similarity=0.103 Sum_probs=89.2
Q ss_pred CcccccCCCcccCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-ccc-chhhhHHHHHHHHHHHHhhcCCCCc
Q 001788 193 NPRLQQAGGVCGGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-FTC-DKAGIVSKLKDLGALIETKFGNGDG 268 (1013)
Q Consensus 193 np~l~~~~~~~vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~~~-~rge~e~r~~~l~~~~~~~~~~~~~ 268 (1013)
|.+| .|+| |||.+++.+|..+..-. .+....++.++.+ +.+ |.|+.+.+++++++.+. +
T Consensus 44 ~vll-------~GppGtGKTtlA~~ia~~l~~~~---~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~-------~ 106 (261)
T TIGR02881 44 HMIF-------KGNPGTGKTTVARILGKLFKEMN---VLSKGHLIEVERADLVGEYIGHTAQKTREVIKKAL-------G 106 (261)
T ss_pred eEEE-------EcCCCCCHHHHHHHHHHHHHhcC---cccCCceEEecHHHhhhhhccchHHHHHHHHHhcc-------C
Confidence 5677 9999 99999999999875432 2344467888877 544 88999888888775542 3
Q ss_pred eEEEecchhHHHhcccccCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEecCHHHHHHhhhcCCCCCCCC
Q 001788 269 VILDLGDLKWLVEQQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATCETYLRCQVYHPSMENDW 348 (1013)
Q Consensus 269 ~il~idel~~l~~~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~IgatT~~~Y~k~~~~~~ale~~~ 348 (1013)
-||||||+|.|...+.. .-... .+..|++.+-..++.+.+|++++..+-..+...+|+| ..
T Consensus 107 ~VL~IDE~~~L~~~~~~--------------~~~~~---~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L--~s 167 (261)
T TIGR02881 107 GVLFIDEAYSLARGGEK--------------DFGKE---AIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGL--RS 167 (261)
T ss_pred CEEEEechhhhccCCcc--------------chHHH---HHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHH--Hh
Confidence 49999999999743211 01122 2333455443236788888888776666777789999 89
Q ss_pred CC-eeeeccC
Q 001788 349 DL-QAVPIAA 357 (1013)
Q Consensus 349 rf-q~v~v~e 357 (1013)
|| ..|.++.
T Consensus 168 Rf~~~i~f~~ 177 (261)
T TIGR02881 168 RFPISIDFPD 177 (261)
T ss_pred ccceEEEECC
Confidence 99 4577766
No 251
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.83 E-value=6.8e-05 Score=90.36 Aligned_cols=129 Identities=12% Similarity=0.161 Sum_probs=94.1
Q ss_pred CcccccCCCcccCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-cc-cchhhhHHHHHHHHHHHHhhcCCCCc
Q 001788 193 NPRLQQAGGVCGGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-FT-CDKAGIVSKLKDLGALIETKFGNGDG 268 (1013)
Q Consensus 193 np~l~~~~~~~vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~~-~~rge~e~r~~~l~~~~~~~~~~~~~ 268 (1013)
+.+| .|+| |||.+++.+|.. .++.++.++.+ +. .+.|+-+.+++++++.++. ..+
T Consensus 90 giLL-------~GppGtGKT~la~alA~~----------~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~----~~p 148 (495)
T TIGR01241 90 GVLL-------VGPPGTGKTLLAKAVAGE----------AGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKK----NAP 148 (495)
T ss_pred cEEE-------ECCCCCCHHHHHHHHHHH----------cCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHh----cCC
Confidence 5777 9999 999999999976 45678888877 53 4778888999999999987 578
Q ss_pred eEEEecchhHHHhcccccCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEecCHHHHHHhhhcCCCCCCCC
Q 001788 269 VILDLGDLKWLVEQQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATCETYLRCQVYHPSMENDW 348 (1013)
Q Consensus 269 ~il~idel~~l~~~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~IgatT~~~Y~k~~~~~~ale~~~ 348 (1013)
.|||||||+.+......+.+. ......+.+.++-+.+..+. .++.+-+||||+..+ ..||+| .|
T Consensus 149 ~Il~iDEid~l~~~r~~~~~~--------~~~~~~~~~~~lL~~~d~~~-~~~~v~vI~aTn~~~-----~ld~al--~r 212 (495)
T TIGR01241 149 CIIFIDEIDAVGRQRGAGLGG--------GNDEREQTLNQLLVEMDGFG-TNTGVIVIAATNRPD-----VLDPAL--LR 212 (495)
T ss_pred CEEEEechhhhhhccccCcCC--------ccHHHHHHHHHHHhhhcccc-CCCCeEEEEecCChh-----hcCHHH--hc
Confidence 999999999998765431110 01123444555656666555 577899999997754 567888 55
Q ss_pred --CC-eeeeccCCC
Q 001788 349 --DL-QAVPIAAKT 359 (1013)
Q Consensus 349 --rf-q~v~v~e~~ 359 (1013)
|| ..|.|+- |
T Consensus 213 ~gRfd~~i~i~~-P 225 (495)
T TIGR01241 213 PGRFDRQVVVDL-P 225 (495)
T ss_pred CCcceEEEEcCC-C
Confidence 77 4567766 5
No 252
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.83 E-value=2.5e-05 Score=88.09 Aligned_cols=106 Identities=20% Similarity=0.221 Sum_probs=61.2
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccccccchhhhHHHHHHcCCCEEEEEeCCCC--CCHHH
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKRNPFSVILLEDIDE--ADMVV 745 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~~p~~VV~lDEIdk--a~~~v 745 (1013)
++|+||+|||||.||.+||..+.........+.++++.......+ +......+.+.++. ..||+||||.. +.+-+
T Consensus 159 l~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~-~~~~~~~~l~~l~~--~dlLiIDDiG~e~~s~~~ 235 (306)
T PRK08939 159 LYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSI-SDGSVKEKIDAVKE--APVLMLDDIGAEQMSSWV 235 (306)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHH-hcCcHHHHHHHhcC--CCEEEEecCCCccccHHH
Confidence 999999999999999999999875544444444443211100001 11111233344433 46999999964 55555
Q ss_pred HHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchh
Q 001788 746 RGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLK 785 (1013)
Q Consensus 746 q~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~ 785 (1013)
...++..|-+.++.. +.-.|+|||...+.+.
T Consensus 236 ~~~ll~~Il~~R~~~---------~~~ti~TSNl~~~el~ 266 (306)
T PRK08939 236 RDEVLGVILQYRMQE---------ELPTFFTSNFDFDELE 266 (306)
T ss_pred HHHHHHHHHHHHHHC---------CCeEEEECCCCHHHHH
Confidence 544555442222211 1116999998655443
No 253
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.80 E-value=0.00011 Score=87.64 Aligned_cols=130 Identities=14% Similarity=0.218 Sum_probs=82.6
Q ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHhhhhcCCCCCC--CCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceee
Q 001788 621 SFKRLLKSLMEKVWWQQEAASAVATTVTQCKLGNGKRRGA--GSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIP 698 (1013)
Q Consensus 621 ~l~~L~~~L~~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~--~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~ 698 (1013)
.++.|.+.+-..|+|.++..+.+.-.+.- |-...-.. .-+.++.+|++|.||+|||.+.+.+++.+.+. ++
T Consensus 419 iy~lLa~SiAPsIye~edvKkglLLqLfG---Gt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg----~y 491 (804)
T KOG0478|consen 419 IYELLARSIAPSIYELEDVKKGLLLQLFG---GTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRG----VY 491 (804)
T ss_pred HHHHHHHhhchhhhcccchhhhHHHHHhc---CCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcc----ee
Confidence 34567777888899999888777666642 22111111 12567789999999999999999999988643 11
Q ss_pred eCCCCCCCCCccc---ccccch-hhh-H--HHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEec
Q 001788 699 LGPRRDHEEPEVR---VRGKTA-LDK-I--GEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVD 760 (1013)
Q Consensus 699 id~s~~~~~~~~g---~~G~~~-~~~-L--~eal~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d 760 (1013)
...- .++..| |+-.+. .++ + .+++--..++|..|||+|||....+..|+++||...+.-
T Consensus 492 TSGk---GsSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSI 557 (804)
T KOG0478|consen 492 TSGK---GSSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSI 557 (804)
T ss_pred ecCC---ccchhcceeeEEecCccceeeeecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhH
Confidence 1110 011111 111110 011 1 223334456789999999999999999999999776654
No 254
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.79 E-value=2e-05 Score=76.70 Aligned_cols=88 Identities=14% Similarity=0.218 Sum_probs=59.5
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCC-----CCceeeeCCCCCCC-------------CCccc-ccccchhhhHHHHHHc
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGA-----SPIMIPLGPRRDHE-------------EPEVR-VRGKTALDKIGEAVKR 727 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~-----~~~~i~id~s~~~~-------------~~~~g-~~G~~~~~~L~eal~~ 727 (1013)
.++++||+|+|||.+++.+++.+... ...++.+++..... ..... .........+.+.+.+
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~ 85 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDR 85 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHh
Confidence 49999999999999999999987421 35566666544321 00000 0111123456677777
Q ss_pred CCCEEEEEeCCCCC-CHHHHHHHHHHHH
Q 001788 728 NPFSVILLEDIDEA-DMVVRGNIKRAME 754 (1013)
Q Consensus 728 ~p~~VV~lDEIdka-~~~vq~~LL~~le 754 (1013)
....+|+|||+|.+ +..+.+.|..+++
T Consensus 86 ~~~~~lviDe~~~l~~~~~l~~l~~l~~ 113 (131)
T PF13401_consen 86 RRVVLLVIDEADHLFSDEFLEFLRSLLN 113 (131)
T ss_dssp CTEEEEEEETTHHHHTHHHHHHHHHHTC
T ss_pred cCCeEEEEeChHhcCCHHHHHHHHHHHh
Confidence 77679999999999 9899999888776
No 255
>PRK06921 hypothetical protein; Provisional
Probab=97.77 E-value=2.1e-05 Score=87.08 Aligned_cols=104 Identities=11% Similarity=0.119 Sum_probs=61.6
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCC-CCceeeeCCCCCCCCCcccccccchhhhHHHHHHcCCCEEEEEeCCCC-----
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGA-SPIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKRNPFSVILLEDIDE----- 740 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~-~~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~~p~~VV~lDEIdk----- 740 (1013)
|++|+||+|+|||.|+.+|++.+... ...++.+...+........+ .......+.+ ....||+|||++.
T Consensus 119 ~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~---~~~~~~~~~~--~~~dlLiIDDl~~~~~g~ 193 (266)
T PRK06921 119 SIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF---DLLEAKLNRM--KKVEVLFIDDLFKPVNGK 193 (266)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH---HHHHHHHHHh--cCCCEEEEeccccccCCC
Confidence 49999999999999999999988754 34445444432110000000 0011122222 2347999999943
Q ss_pred --CCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchh
Q 001788 741 --ADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLK 785 (1013)
Q Consensus 741 --a~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~ 785 (1013)
+..-.+..|..+++..... ++ -+|+|||...+.+.
T Consensus 194 e~~t~~~~~~lf~iin~R~~~---~k-------~tIitsn~~~~el~ 230 (266)
T PRK06921 194 PRATEWQIEQMYSVLNYRYLN---HK-------PILISSELTIDELL 230 (266)
T ss_pred ccCCHHHHHHHHHHHHHHHHC---CC-------CEEEECCCCHHHHh
Confidence 4555667788888643211 11 16889998665544
No 256
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.77 E-value=0.00011 Score=85.87 Aligned_cols=125 Identities=11% Similarity=0.156 Sum_probs=89.4
Q ss_pred cCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-cc-cchhhhHHHHHHHHHHHHhhcCCCCceEEEecchhHH
Q 001788 204 GGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-FT-CDKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKWL 279 (1013)
Q Consensus 204 vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~~-~~rge~e~r~~~l~~~~~~~~~~~~~~il~idel~~l 279 (1013)
.|+| |||.+++.+|.. .+..++.+..+ +. .|-|+.+..+.++++.++. ..+.|||||||..+
T Consensus 185 ~GppGTGKT~LAkalA~~----------l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~----~~P~ILfIDEID~i 250 (398)
T PTZ00454 185 YGPPGTGKTMLAKAVAHH----------TTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARE----NAPSIIFIDEVDSI 250 (398)
T ss_pred ECCCCCCHHHHHHHHHHh----------cCCCEEEEehHHHHHHhcchhHHHHHHHHHHHHh----cCCeEEEEECHhhh
Confidence 9999 999999999986 34567777665 43 4888989999999999987 58999999999999
Q ss_pred Hhccccc-CCCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEecCHHHHHHhhhcCCCCCCCC--CC-eeeec
Q 001788 280 VEQQVTS-FGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATCETYLRCQVYHPSMENDW--DL-QAVPI 355 (1013)
Q Consensus 280 ~~~~~~~-~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~IgatT~~~Y~k~~~~~~ale~~~--rf-q~v~v 355 (1013)
....... .| . .....+.+.++-+.+.... ..+.+.+|+||+.-+ ..||++ -| || ..|.|
T Consensus 251 ~~~r~~~~~~-----~----d~~~~r~l~~LL~~ld~~~-~~~~v~VI~aTN~~d-----~LDpAl--lR~GRfd~~I~~ 313 (398)
T PTZ00454 251 ATKRFDAQTG-----A----DREVQRILLELLNQMDGFD-QTTNVKVIMATNRAD-----TLDPAL--LRPGRLDRKIEF 313 (398)
T ss_pred ccccccccCC-----c----cHHHHHHHHHHHHHhhccC-CCCCEEEEEecCCch-----hCCHHH--cCCCcccEEEEe
Confidence 8654211 11 0 1123344445555555554 467899999998643 568888 66 77 45677
Q ss_pred cCCCC
Q 001788 356 AAKTP 360 (1013)
Q Consensus 356 ~e~~~ 360 (1013)
+- |+
T Consensus 314 ~~-P~ 317 (398)
T PTZ00454 314 PL-PD 317 (398)
T ss_pred CC-cC
Confidence 76 53
No 257
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00015 Score=81.54 Aligned_cols=127 Identities=9% Similarity=0.059 Sum_probs=90.2
Q ss_pred cCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-cc-cchhhhHHHHHHHHHHHHhhcCCCCceEEEecchhHH
Q 001788 204 GGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-FT-CDKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKWL 279 (1013)
Q Consensus 204 vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~~-~~rge~e~r~~~l~~~~~~~~~~~~~~il~idel~~l 279 (1013)
||+| |||.+++++|.. -|.+|+.++.+ +. -||||-|.=+.=|++.++-+ .+.+||||||..|
T Consensus 251 ~GPPGTGKTlLAKAvATE----------c~tTFFNVSsstltSKwRGeSEKlvRlLFemARfy----APStIFiDEIDsl 316 (491)
T KOG0738|consen 251 VGPPGTGKTLLAKAVATE----------CGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFY----APSTIFIDEIDSL 316 (491)
T ss_pred eCCCCCcHHHHHHHHHHh----------hcCeEEEechhhhhhhhccchHHHHHHHHHHHHHh----CCceeehhhHHHH
Confidence 9999 999999999977 77899999999 65 49999998888888888874 8999999999999
Q ss_pred HhcccccCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcCC---CCceEEEEecCHHHHHHhhhcCCCCCCCCCCe-eeec
Q 001788 280 VEQQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGG---GGRLWLIGTATCETYLRCQVYHPSMENDWDLQ-AVPI 355 (1013)
Q Consensus 280 ~~~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~---~g~~~~IgatT~~~Y~k~~~~~~ale~~~rfq-~v~v 355 (1013)
....+.. + +| +..+++=+|+.-.+.+...+ +-.|-+++||++- ...|-|| -|||. .|.|
T Consensus 317 cs~RG~s-~--EH-------EaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~P-----WdiDEAl--rRRlEKRIyI 379 (491)
T KOG0738|consen 317 CSQRGGS-S--EH-------EASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFP-----WDIDEAL--RRRLEKRIYI 379 (491)
T ss_pred HhcCCCc-c--ch-------hHHHHHHHHHHHHhhccccccccceeEEEEeccCCC-----cchHHHH--HHHHhhheee
Confidence 9987542 2 32 24556556776666655522 2236666677551 1234555 56663 3555
Q ss_pred cCCCCCC
Q 001788 356 AAKTPLS 362 (1013)
Q Consensus 356 ~e~~~~~ 362 (1013)
|= |+.+
T Consensus 380 PL-P~~~ 385 (491)
T KOG0738|consen 380 PL-PDAE 385 (491)
T ss_pred eC-CCHH
Confidence 54 5433
No 258
>PRK09183 transposase/IS protein; Provisional
Probab=97.76 E-value=2.2e-05 Score=86.63 Aligned_cols=104 Identities=13% Similarity=0.094 Sum_probs=61.2
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccccccchhhhHHHHHH--cCCCEEEEEeCCCC--CCH
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVK--RNPFSVILLEDIDE--ADM 743 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~--~~p~~VV~lDEIdk--a~~ 743 (1013)
++|+||+|+|||++|.+|+.........+..+++.+.... +......+.+...+. .....+++|||++. .+.
T Consensus 105 v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~----l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~~~~~ 180 (259)
T PRK09183 105 IVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQ----LSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQ 180 (259)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHH----HHHHHHCCcHHHHHHHHhcCCCEEEEcccccCCCCh
Confidence 8999999999999999998775433333334443321110 000000011212221 12337999999986 456
Q ss_pred HHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchhh
Q 001788 744 VVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLKF 786 (1013)
Q Consensus 744 ~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~~ 786 (1013)
..++.|+++++... . . .. +|+|||...+.+..
T Consensus 181 ~~~~~lf~li~~r~-~--~-------~s-~iiTsn~~~~~w~~ 212 (259)
T PRK09183 181 EEANLFFQVIAKRY-E--K-------GS-MILTSNLPFGQWDQ 212 (259)
T ss_pred HHHHHHHHHHHHHH-h--c-------Cc-EEEecCCCHHHHHH
Confidence 67778999996532 1 1 12 68999987665543
No 259
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.75 E-value=0.00014 Score=88.56 Aligned_cols=94 Identities=14% Similarity=0.185 Sum_probs=65.9
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccccccchhhhHHHHH------------HcCCCEEEEE
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGKTALDKIGEAV------------KRNPFSVILL 735 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal------------~~~p~~VV~l 735 (1013)
+++.|+.|+||+++++.|+..+.. ..+|+.+..+- +....+|. ..|...+ ....++|+||
T Consensus 28 v~i~g~~G~~ks~~~r~l~~llp~-~~p~r~~p~~~----t~~~L~Gg---~Dl~~~l~~g~~~~~pGlla~Ah~GvL~l 99 (584)
T PRK13406 28 VVLRARAGPVRDRWLAALRALLPA-GTPLRRLPPGI----ADDRLLGG---LDLAATLRAGRPVAQRGLLAEADGGVLVL 99 (584)
T ss_pred EEEEcCCCcHHHHHHHHHHHhcCC-CCCcccCCCCC----cHHHccCC---chHHhHhhcCCcCCCCCceeeccCCEEEe
Confidence 999999999999999999999863 35676555442 11123332 1222222 2233579999
Q ss_pred eCCCCCCHHHHHHHHHHHHcceEecC-CCeEeecC
Q 001788 736 EDIDEADMVVRGNIKRAMERGRLVDS-YGREISLG 769 (1013)
Q Consensus 736 DEIdka~~~vq~~LL~~le~G~l~d~-~g~~vd~~ 769 (1013)
||+..+++.+++.|++.|++|.++-. .|..+.+.
T Consensus 100 De~n~~~~~~~~aLleame~G~vtIeR~G~s~~~P 134 (584)
T PRK13406 100 AMAERLEPGTAARLAAALDTGEVRLERDGLALRLP 134 (584)
T ss_pred cCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecC
Confidence 99999999999999999999998753 34444443
No 260
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.74 E-value=0.00099 Score=80.20 Aligned_cols=50 Identities=20% Similarity=0.326 Sum_probs=38.5
Q ss_pred ccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhc
Q 001788 633 VWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVS 690 (1013)
Q Consensus 633 ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~ 690 (1013)
+.-++.-++.|..++.....+..+.+ .++|+||+|||||++.+.||+.+.
T Consensus 21 LavhkkKv~eV~~wl~~~~~~~~~~~--------iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 21 LAVHKKKVEEVRSWLEEMFSGSSPKR--------ILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred hhccHHHHHHHHHHHHHHhccCCCcc--------eEEEECCCCCCHHHHHHHHHHHhC
Confidence 45566777888888876655432221 399999999999999999999986
No 261
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=9.3e-05 Score=89.10 Aligned_cols=126 Identities=9% Similarity=0.151 Sum_probs=99.5
Q ss_pred cCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc--cccchhhhHHHHHHHHHHHHhhcCCCCceEEEecchhHH
Q 001788 204 GGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD--FTCDKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKWL 279 (1013)
Q Consensus 204 vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~--~~~~rge~e~r~~~l~~~~~~~~~~~~~~il~idel~~l 279 (1013)
-|.| |||-+++++|.. =...|+++--. +-||-||-|+.+.+++..+++ ..|.|||+|||..|
T Consensus 711 YGPPGTGKTLlAKAVATE----------csL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~----A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 711 YGPPGTGKTLLAKAVATE----------CSLNFLSVKGPELLNMYVGQSEENVREVFERARS----AAPCVIFFDELDSL 776 (953)
T ss_pred ECCCCCchHHHHHHHHhh----------ceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhc----cCCeEEEecccccc
Confidence 9999 999999999977 45568888766 468999999999999999999 58999999999999
Q ss_pred HhcccccCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcC-CCCceEEEEecCHHHHHHhhhcCCCCCCCCCCe-eeeccC
Q 001788 280 VEQQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGG-GGGRLWLIGTATCETYLRCQVYHPSMENDWDLQ-AVPIAA 357 (1013)
Q Consensus 280 ~~~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~-~~g~~~~IgatT~~~Y~k~~~~~~ale~~~rfq-~v~v~e 357 (1013)
+...++.+ +.....+++|+++-.=|..+-. ..-.|-+||||+.-. -.||||=..-||. .|.|..
T Consensus 777 AP~RG~sG---------DSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPD-----LLDpALLRPGRFDKLvyvG~ 842 (953)
T KOG0736|consen 777 APNRGRSG---------DSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPD-----LLDPALLRPGRFDKLVYVGP 842 (953)
T ss_pred CccCCCCC---------CccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCcc-----ccChhhcCCCccceeEEecC
Confidence 99876522 2244677888888777776653 355899999998744 3689996667884 455554
No 262
>CHL00176 ftsH cell division protein; Validated
Probab=97.71 E-value=0.00016 Score=88.92 Aligned_cols=133 Identities=9% Similarity=0.125 Sum_probs=89.3
Q ss_pred CCcccccCCCcccCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-cc-cchhhhHHHHHHHHHHHHhhcCCCC
Q 001788 192 MNPRLQQAGGVCGGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-FT-CDKAGIVSKLKDLGALIETKFGNGD 267 (1013)
Q Consensus 192 ~np~l~~~~~~~vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~~-~~rge~e~r~~~l~~~~~~~~~~~~ 267 (1013)
.+.+| .|+| |||.+++.+|.. .++.++.++.+ |. ++.|.-..++.++++.+.. ..
T Consensus 217 ~gVLL-------~GPpGTGKT~LAralA~e----------~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~----~~ 275 (638)
T CHL00176 217 KGVLL-------VGPPGTGKTLLAKAIAGE----------AEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKE----NS 275 (638)
T ss_pred ceEEE-------ECCCCCCHHHHHHHHHHH----------hCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhc----CC
Confidence 35677 9999 999999999976 35668888877 53 4667777889999998887 68
Q ss_pred ceEEEecchhHHHhcccccCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEecCHHHHHHhhhcCCCCCCC
Q 001788 268 GVILDLGDLKWLVEQQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATCETYLRCQVYHPSMEND 347 (1013)
Q Consensus 268 ~~il~idel~~l~~~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~IgatT~~~Y~k~~~~~~ale~~ 347 (1013)
+.|||||||+.+......+.+.. .......+..+-+.+..+. .+..+.+||||+.-+ ..||+|-..
T Consensus 276 P~ILfIDEID~l~~~r~~~~~~~--------~~e~~~~L~~LL~~~dg~~-~~~~ViVIaaTN~~~-----~LD~ALlRp 341 (638)
T CHL00176 276 PCIVFIDEIDAVGRQRGAGIGGG--------NDEREQTLNQLLTEMDGFK-GNKGVIVIAATNRVD-----ILDAALLRP 341 (638)
T ss_pred CcEEEEecchhhhhcccCCCCCC--------cHHHHHHHHHHHhhhcccc-CCCCeeEEEecCchH-----hhhhhhhcc
Confidence 99999999999986543211100 1122333333433344444 466899999998754 346888222
Q ss_pred CCC-eeeeccCCCC
Q 001788 348 WDL-QAVPIAAKTP 360 (1013)
Q Consensus 348 ~rf-q~v~v~e~~~ 360 (1013)
-|| ..|.|+. |+
T Consensus 342 GRFd~~I~v~l-Pd 354 (638)
T CHL00176 342 GRFDRQITVSL-PD 354 (638)
T ss_pred ccCceEEEECC-CC
Confidence 266 4567766 53
No 263
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.71 E-value=0.00066 Score=73.58 Aligned_cols=75 Identities=12% Similarity=0.211 Sum_probs=54.7
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccccccchhhhHHHHHHcCCCEEEEEeCCCCCCHHHHH
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKRNPFSVILLEDIDEADMVVRG 747 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~~p~~VV~lDEIdka~~~vq~ 747 (1013)
-.+.||.|||||++.+.||+.+. ..++.++|++. ..+...+++...+... +.-++|||+++++.+++.
T Consensus 35 ~~~~GpagtGKtetik~La~~lG---~~~~vfnc~~~--------~~~~~l~ril~G~~~~-GaW~cfdefnrl~~~vLS 102 (231)
T PF12774_consen 35 GALSGPAGTGKTETIKDLARALG---RFVVVFNCSEQ--------MDYQSLSRILKGLAQS-GAWLCFDEFNRLSEEVLS 102 (231)
T ss_dssp EEEESSTTSSHHHHHHHHHHCTT-----EEEEETTSS--------S-HHHHHHHHHHHHHH-T-EEEEETCCCSSHHHHH
T ss_pred CCCcCCCCCCchhHHHHHHHHhC---CeEEEeccccc--------ccHHHHHHHHHHHhhc-CchhhhhhhhhhhHHHHH
Confidence 46899999999999999999997 78899999863 2233344444443333 488999999999999888
Q ss_pred HHHHHHH
Q 001788 748 NIKRAME 754 (1013)
Q Consensus 748 ~LL~~le 754 (1013)
.+.+.+.
T Consensus 103 ~i~~~i~ 109 (231)
T PF12774_consen 103 VISQQIQ 109 (231)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766553
No 264
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=97.70 E-value=0.00012 Score=80.71 Aligned_cols=105 Identities=18% Similarity=0.234 Sum_probs=66.2
Q ss_pred cccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCC-C--CceeeeCCCCCCCCC
Q 001788 632 KVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGA-S--PIMIPLGPRRDHEEP 708 (1013)
Q Consensus 632 ~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~-~--~~~i~id~s~~~~~~ 708 (1013)
.+++|++.+..+.+.. +.. + +++ +||+||||+|||....+.|+.+++. . ..+..++.|..-+
T Consensus 42 dv~~~~ei~st~~~~~-----~~~-~--lPh-----~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rg-- 106 (360)
T KOG0990|consen 42 IVIKQEPIWSTENRYS-----GMP-G--LPH-----LLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRG-- 106 (360)
T ss_pred hHhcCCchhhHHHHhc-----cCC-C--CCc-----ccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccC--
Confidence 3688888777766652 221 1 223 9999999999999999999999863 1 1123444443111
Q ss_pred cccccccchhhhHHHHHH-------cCCCEEEEEeCCCCCCHHHHHHHHHHHH
Q 001788 709 EVRVRGKTALDKIGEAVK-------RNPFSVILLEDIDEADMVVRGNIKRAME 754 (1013)
Q Consensus 709 ~~g~~G~~~~~~L~eal~-------~~p~~VV~lDEIdka~~~vq~~LL~~le 754 (1013)
.+-+. ..-.+....+ ...+..|+|||.|.+..+.||.|.+.++
T Consensus 107 -id~vr--~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRvie 156 (360)
T KOG0990|consen 107 -IDPVR--QQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIE 156 (360)
T ss_pred -CcchH--HHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHH
Confidence 00000 0001111111 2366789999999999999999999775
No 265
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.68 E-value=0.00017 Score=78.80 Aligned_cols=97 Identities=12% Similarity=-0.005 Sum_probs=67.2
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCC------CCCCccc---------ccccchhhhHHHHHHc-----
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRD------HEEPEVR---------VRGKTALDKIGEAVKR----- 727 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~------~~~~~~g---------~~G~~~~~~L~eal~~----- 727 (1013)
+||.||.|+||..+|.++|+.+...... -.|... ..+..|. ..+.++...+.+.+..
T Consensus 10 ~Lf~G~~G~G~~~lA~~~A~~llC~~~~---~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e~ 86 (261)
T PRK05818 10 LLLIERKGSFLKPFLYEYLTSIVCTKAN---GFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVES 86 (261)
T ss_pred eeeeCCCCCcHHHHHHHHHHHHcCCCCC---CCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchhc
Confidence 9999999999999999999999865321 012211 1111111 1233334455554443
Q ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecC
Q 001788 728 NPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778 (1013)
Q Consensus 728 ~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN 778 (1013)
.++.|++|+++|+|+....|.||+.+|+-. .+++||++|+
T Consensus 87 ~~~KV~II~~ae~m~~~AaNaLLK~LEEPp-----------~~t~fiLit~ 126 (261)
T PRK05818 87 NGKKIYIIYGIEKLNKQSANSLLKLIEEPP-----------KNTYGIFTTR 126 (261)
T ss_pred CCCEEEEeccHhhhCHHHHHHHHHhhcCCC-----------CCeEEEEEEC
Confidence 346899999999999999999999999632 5678888886
No 266
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.68 E-value=0.0014 Score=69.94 Aligned_cols=120 Identities=18% Similarity=0.227 Sum_probs=85.5
Q ss_pred ccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccc
Q 001788 633 VWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRV 712 (1013)
Q Consensus 633 ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~ 712 (1013)
++|-+...+.+.....+-..|...++ +|++|.-|+||+.+.+++...+......+|.++-.+..
T Consensus 62 l~Gvd~qk~~L~~NT~~F~~G~pANn---------VLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~------- 125 (287)
T COG2607 62 LVGVDRQKEALVRNTEQFAEGLPANN---------VLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA------- 125 (287)
T ss_pred HhCchHHHHHHHHHHHHHHcCCcccc---------eEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh-------
Confidence 56777777777777777666654322 99999999999999999999988777777777755321
Q ss_pred cccchhhhHHHHHHcCCCE-EEEEeCCC-CCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCC
Q 001788 713 RGKTALDKIGEAVKRNPFS-VILLEDID-EADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADW 779 (1013)
Q Consensus 713 ~G~~~~~~L~eal~~~p~~-VV~lDEId-ka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~ 779 (1013)
....|.+.++..|.. |||.|+.- .-+......|..+||.|.-. --.|++|-+|||.
T Consensus 126 ----~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~-------rP~NVl~YATSNR 183 (287)
T COG2607 126 ----TLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEG-------RPANVLFYATSNR 183 (287)
T ss_pred ----hHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCccc-------CCCeEEEEEecCC
Confidence 234678888888876 67788763 22345667777788644322 2368889999984
No 267
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.63 E-value=0.0002 Score=84.27 Aligned_cols=127 Identities=9% Similarity=0.145 Sum_probs=86.9
Q ss_pred cCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-cc-cchhhhHHHHHHHHHHHHhhcCCCCceEEEecchhHH
Q 001788 204 GGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-FT-CDKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKWL 279 (1013)
Q Consensus 204 vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~~-~~rge~e~r~~~l~~~~~~~~~~~~~~il~idel~~l 279 (1013)
.|+| |||.+++.+|..+ +..++.+..+ +. .|.|+.+..+.++++.++. +.+.|||||||+.+
T Consensus 223 ~GPPGTGKT~LAraIA~el----------~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~----~~P~ILfIDEID~l 288 (438)
T PTZ00361 223 YGPPGTGKTLLAKAVANET----------SATFLRVVGSELIQKYLGDGPKLVRELFRVAEE----NAPSIVFIDEIDAI 288 (438)
T ss_pred ECCCCCCHHHHHHHHHHhh----------CCCEEEEecchhhhhhcchHHHHHHHHHHHHHh----CCCcEEeHHHHHHH
Confidence 9999 9999999999874 3456777666 54 4888988899999999887 68999999999999
Q ss_pred Hhccccc-CCCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEecCHHHHHHhhhcCCCCCCCCCC-eeeeccC
Q 001788 280 VEQQVTS-FGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATCETYLRCQVYHPSMENDWDL-QAVPIAA 357 (1013)
Q Consensus 280 ~~~~~~~-~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~IgatT~~~Y~k~~~~~~ale~~~rf-q~v~v~e 357 (1013)
....... +| + .......+.++.+.|.... .++.+.+|+||+.-+ ..||+|-...|| ..|.|+.
T Consensus 289 ~~kR~~~~sg----g-----~~e~qr~ll~LL~~Ldg~~-~~~~V~VI~ATNr~d-----~LDpaLlRpGRfd~~I~~~~ 353 (438)
T PTZ00361 289 GTKRYDATSG----G-----EKEIQRTMLELLNQLDGFD-SRGDVKVIMATNRIE-----SLDPALIRPGRIDRKIEFPN 353 (438)
T ss_pred hccCCCCCCc----c-----cHHHHHHHHHHHHHHhhhc-ccCCeEEEEecCChH-----HhhHHhccCCeeEEEEEeCC
Confidence 8754221 11 0 0012222334445555555 477899999997543 237777222367 4677776
Q ss_pred CCC
Q 001788 358 KTP 360 (1013)
Q Consensus 358 ~~~ 360 (1013)
|+
T Consensus 354 -Pd 355 (438)
T PTZ00361 354 -PD 355 (438)
T ss_pred -CC
Confidence 63
No 268
>CHL00181 cbbX CbbX; Provisional
Probab=97.62 E-value=0.00017 Score=80.73 Aligned_cols=125 Identities=11% Similarity=0.093 Sum_probs=84.6
Q ss_pred cCCC--hhHHHHHHHHHHHHh-cCCcccccCcEEEEeccc-cc-cchhhhHHHHHHHHHHHHhhcCCCCceEEEecchhH
Q 001788 204 GGQS--EPEMVVRESLAKIES-KELDGVLKNVQIIRLDKD-FT-CDKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKW 278 (1013)
Q Consensus 204 vG~~--gkta~v~~la~~i~~-~~vp~~L~~~~~~~l~~~-~~-~~rge~e~r~~~l~~~~~~~~~~~~~~il~idel~~ 278 (1013)
.|+| |||.+++.+|..... |- +.+.+++.++.. +. .|.|+.+.+..++++.+ .|-||||||++.
T Consensus 65 ~G~pGtGKT~lAr~la~~~~~~g~----~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a-------~ggVLfIDE~~~ 133 (287)
T CHL00181 65 TGSPGTGKTTVALKMADILYKLGY----IKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKA-------MGGVLFIDEAYY 133 (287)
T ss_pred ECCCCCCHHHHHHHHHHHHHHcCC----CCCCceEEecHHHHHHHHhccchHHHHHHHHHc-------cCCEEEEEccch
Confidence 9999 999999999987643 42 334458888876 54 48888887776655543 234999999999
Q ss_pred HHhcccccCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEecCHHHHHHhhhcCCCCCCCCCCe-eeeccC
Q 001788 279 LVEQQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATCETYLRCQVYHPSMENDWDLQ-AVPIAA 357 (1013)
Q Consensus 279 l~~~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~IgatT~~~Y~k~~~~~~ale~~~rfq-~v~v~e 357 (1013)
|...+... +....++..+..+|.. .++.+.+|+|++.+.-.+++..+|+| .+||. .|.++.
T Consensus 134 l~~~~~~~-------------~~~~e~~~~L~~~me~---~~~~~~vI~ag~~~~~~~~~~~np~L--~sR~~~~i~F~~ 195 (287)
T CHL00181 134 LYKPDNER-------------DYGSEAIEILLQVMEN---QRDDLVVIFAGYKDRMDKFYESNPGL--SSRIANHVDFPD 195 (287)
T ss_pred hccCCCcc-------------chHHHHHHHHHHHHhc---CCCCEEEEEeCCcHHHHHHHhcCHHH--HHhCCceEEcCC
Confidence 87543210 1123222333344432 35689999998776666677778999 99996 466665
No 269
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00011 Score=85.02 Aligned_cols=124 Identities=7% Similarity=0.034 Sum_probs=88.2
Q ss_pred cCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-ccc-chhhhHHHHHHHHHHHHhhcCCCCceEEEecchhHH
Q 001788 204 GGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-FTC-DKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKWL 279 (1013)
Q Consensus 204 vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~~~-~rge~e~r~~~l~~~~~~~~~~~~~~il~idel~~l 279 (1013)
.|+| |||++++.+|.. .++.++.+..+ +.+ |-||-|.=+..|++.++. ..+.|+||||++.+
T Consensus 192 fGPpgtGKtmL~~aiAsE----------~~atff~iSassLtsK~~Ge~eK~vralf~vAr~----~qPsvifidEidsl 257 (428)
T KOG0740|consen 192 FGPPGTGKTMLAKAIATE----------SGATFFNISASSLTSKYVGESEKLVRALFKVARS----LQPSVIFIDEIDSL 257 (428)
T ss_pred ecCCCCchHHHHHHHHhh----------hcceEeeccHHHhhhhccChHHHHHHHHHHHHHh----cCCeEEEechhHHH
Confidence 9999 999999999977 78999999988 876 999999889999999887 68999999999999
Q ss_pred HhcccccCCCCCCCcchhhhhHHHHHHHH--HHHHHhhhcCCCCceEEEEecCHHHHHHhhhcCCCCCCCCCCeeeeccC
Q 001788 280 VEQQVTSFGVPNSGTLQQQQQVLAEVVAE--IGKLVARFGGGGGRLWLIGTATCETYLRCQVYHPSMENDWDLQAVPIAA 357 (1013)
Q Consensus 280 ~~~~~~~~g~~~~~~~~~~~~~~~~~V~e--~~~llk~~~~~~g~~~~IgatT~~~Y~k~~~~~~ale~~~rfq~v~v~e 357 (1013)
+.... .+ +++.. ..+=.| +.-+.+..- +..+|.+||||+.- ++.|-++ -||||.+.--.
T Consensus 258 ls~Rs--~~--e~e~s-------rr~ktefLiq~~~~~s~-~~drvlvigaTN~P-----~e~Dea~--~Rrf~kr~yip 318 (428)
T KOG0740|consen 258 LSKRS--DN--EHESS-------RRLKTEFLLQFDGKNSA-PDDRVLVIGATNRP-----WELDEAA--RRRFVKRLYIP 318 (428)
T ss_pred HhhcC--Cc--ccccc-------hhhhhHHHhhhccccCC-CCCeEEEEecCCCc-----hHHHHHH--HHHhhceeeec
Confidence 99872 22 32221 111111 111222222 46699999999752 2456666 77887655433
Q ss_pred CCC
Q 001788 358 KTP 360 (1013)
Q Consensus 358 ~~~ 360 (1013)
.|+
T Consensus 319 lPd 321 (428)
T KOG0740|consen 319 LPD 321 (428)
T ss_pred CCC
Confidence 243
No 270
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.54 E-value=0.00037 Score=77.92 Aligned_cols=126 Identities=10% Similarity=0.086 Sum_probs=84.8
Q ss_pred cCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-cc-cchhhhHHHHHHHHHHHHhhcCCCCceEEEecchhHH
Q 001788 204 GGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-FT-CDKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKWL 279 (1013)
Q Consensus 204 vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~~-~~rge~e~r~~~l~~~~~~~~~~~~~~il~idel~~l 279 (1013)
.|+| |||.+++.+|+.+..-- .+..-.++.++.. +. .+.|+-+.++.++++.+ .+-||||||++.|
T Consensus 64 ~G~pGTGKT~lA~~ia~~l~~~g---~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a-------~~gvL~iDEi~~L 133 (284)
T TIGR02880 64 TGNPGTGKTTVALRMAQILHRLG---YVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRA-------MGGVLFIDEAYYL 133 (284)
T ss_pred EcCCCCCHHHHHHHHHHHHHHcC---CcccceEEEecHHHHhHhhcccchHHHHHHHHHc-------cCcEEEEechhhh
Confidence 8999 99999999998876521 2233357888766 43 47777776666555443 3459999999998
Q ss_pred HhcccccCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEecCHHHHHHhhhcCCCCCCCCCC-eeeeccC
Q 001788 280 VEQQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATCETYLRCQVYHPSMENDWDL-QAVPIAA 357 (1013)
Q Consensus 280 ~~~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~IgatT~~~Y~k~~~~~~ale~~~rf-q~v~v~e 357 (1013)
...... .+....++..+.++|.. .++++.+|+|++.+.-..+...+|+| .+|| ..|.++.
T Consensus 134 ~~~~~~-------------~~~~~~~~~~Ll~~le~---~~~~~~vI~a~~~~~~~~~~~~np~L--~sR~~~~i~fp~ 194 (284)
T TIGR02880 134 YRPDNE-------------RDYGQEAIEILLQVMEN---QRDDLVVILAGYKDRMDSFFESNPGF--SSRVAHHVDFPD 194 (284)
T ss_pred ccCCCc-------------cchHHHHHHHHHHHHhc---CCCCEEEEEeCCcHHHHHHHhhCHHH--HhhCCcEEEeCC
Confidence 643211 01223333344444442 35799999999876666666779999 9999 4677876
No 271
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.48 E-value=0.00034 Score=74.46 Aligned_cols=110 Identities=10% Similarity=0.195 Sum_probs=62.0
Q ss_pred ccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCC-----
Q 001788 633 VWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEE----- 707 (1013)
Q Consensus 633 ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~----- 707 (1013)
++|.++.++.|...+.... ...++++||.|+|||.+.+.+.+.+.......+.++.......
T Consensus 1 F~gR~~el~~l~~~l~~~~-------------~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 67 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP-------------SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRS 67 (234)
T ss_dssp S-S-HHHHHHHHHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhc-------------CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHH
Confidence 3677777777776664211 1128999999999999999999988433222233332111000
Q ss_pred -----------------Cccccc-----------ccchhhhHHHHHHcCC-CEEEEEeCCCCCC------HHHHHHHHHH
Q 001788 708 -----------------PEVRVR-----------GKTALDKIGEAVKRNP-FSVILLEDIDEAD------MVVRGNIKRA 752 (1013)
Q Consensus 708 -----------------~~~g~~-----------G~~~~~~L~eal~~~p-~~VV~lDEIdka~------~~vq~~LL~~ 752 (1013)
..+... -......+.+.+.+.. ..||+|||++.+. +.....|..+
T Consensus 68 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~ 147 (234)
T PF01637_consen 68 FIEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSL 147 (234)
T ss_dssp HHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHH
Confidence 000000 0111234455555443 3799999999988 5777778888
Q ss_pred HHc
Q 001788 753 MER 755 (1013)
Q Consensus 753 le~ 755 (1013)
++.
T Consensus 148 ~~~ 150 (234)
T PF01637_consen 148 LDS 150 (234)
T ss_dssp HHH
T ss_pred Hhh
Confidence 865
No 272
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.47 E-value=0.00062 Score=75.66 Aligned_cols=131 Identities=11% Similarity=0.153 Sum_probs=95.3
Q ss_pred CCcccccCCCcccCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-------c------c-c----chhhhHHH
Q 001788 192 MNPRLQQAGGVCGGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-------F------T-C----DKAGIVSK 251 (1013)
Q Consensus 192 ~np~l~~~~~~~vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-------~------~-~----~rge~e~r 251 (1013)
.|-+| ||++ |||.|++.+++.-....-++ -....|+.+++. | + | .+....++
T Consensus 62 p~lLi-------vG~snnGKT~Ii~rF~~~hp~~~d~~-~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~ 133 (302)
T PF05621_consen 62 PNLLI-------VGDSNNGKTMIIERFRRLHPPQSDED-AERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKL 133 (302)
T ss_pred CceEE-------ecCCCCcHHHHHHHHHHHCCCCCCCC-CccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHH
Confidence 47788 9999 99999999998754432222 123467777664 1 0 2 34445555
Q ss_pred HHHHHHHHHhhcCCCCceEEEecchhHHHhcccccCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEecCH
Q 001788 252 LKDLGALIETKFGNGDGVILDLGDLKWLVEQQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATC 331 (1013)
Q Consensus 252 ~~~l~~~~~~~~~~~~~~il~idel~~l~~~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~IgatT~ 331 (1013)
-..+...++.. +-=+|.|||+|.++-+.. .-.. +..|+||-.+ ..-++-+||+.|.
T Consensus 134 ~~~~~~llr~~----~vrmLIIDE~H~lLaGs~---------------~~qr----~~Ln~LK~L~-NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 134 EQQVLRLLRRL----GVRMLIIDEFHNLLAGSY---------------RKQR----EFLNALKFLG-NELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHHHHHc----CCcEEEeechHHHhcccH---------------HHHH----HHHHHHHHHh-hccCCCeEEeccH
Confidence 55556666663 566889999999874321 1223 7899999887 7889999999999
Q ss_pred HHHHHhhhcCCCCCCCCCCeeeeccC
Q 001788 332 ETYLRCQVYHPSMENDWDLQAVPIAA 357 (1013)
Q Consensus 332 ~~Y~k~~~~~~ale~~~rfq~v~v~e 357 (1013)
+.|+ .+..||-| ..||+++.+|.
T Consensus 190 ~A~~-al~~D~QL--a~RF~~~~Lp~ 212 (302)
T PF05621_consen 190 EAYR-ALRTDPQL--ASRFEPFELPR 212 (302)
T ss_pred HHHH-HhccCHHH--HhccCCccCCC
Confidence 9999 56889999 99999999986
No 273
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.46 E-value=0.00056 Score=84.89 Aligned_cols=131 Identities=11% Similarity=0.156 Sum_probs=90.7
Q ss_pred CCcccccCCCcccCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-cc-cchhhhHHHHHHHHHHHHhhcCCCC
Q 001788 192 MNPRLQQAGGVCGGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-FT-CDKAGIVSKLKDLGALIETKFGNGD 267 (1013)
Q Consensus 192 ~np~l~~~~~~~vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~~-~~rge~e~r~~~l~~~~~~~~~~~~ 267 (1013)
.+.+| +|+| |||.+++.++.. .++.++.++.+ +. ++.|.-+.++.++++.++. ..
T Consensus 186 ~gill-------~G~~G~GKt~~~~~~a~~----------~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~----~~ 244 (644)
T PRK10733 186 KGVLM-------VGPPGTGKTLLAKAIAGE----------AKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKK----AA 244 (644)
T ss_pred CcEEE-------ECCCCCCHHHHHHHHHHH----------cCCCEEEEehHHhHHhhhcccHHHHHHHHHHHHh----cC
Confidence 35677 9999 999999999876 35568888877 53 5778888899999999877 58
Q ss_pred ceEEEecchhHHHhcccccCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEecCHHHHHHhhhcCCCCCCC
Q 001788 268 GVILDLGDLKWLVEQQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATCETYLRCQVYHPSMEND 347 (1013)
Q Consensus 268 ~~il~idel~~l~~~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~IgatT~~~Y~k~~~~~~ale~~ 347 (1013)
+.||||||++.+......+.+. . .......+..+-..+..+. ..-.+-+||||+.-+ ..||++ .
T Consensus 245 P~IifIDEiD~l~~~r~~~~~g-~-------~~~~~~~ln~lL~~mdg~~-~~~~vivIaaTN~p~-----~lD~Al--~ 308 (644)
T PRK10733 245 PCIIFIDEIDAVGRQRGAGLGG-G-------HDEREQTLNQMLVEMDGFE-GNEGIIVIAATNRPD-----VLDPAL--L 308 (644)
T ss_pred CcEEEehhHhhhhhccCCCCCC-C-------chHHHHHHHHHHHhhhccc-CCCCeeEEEecCChh-----hcCHHH--h
Confidence 9999999999997665331110 0 0112233334444445554 455788999998755 457888 5
Q ss_pred C--CC-eeeeccCCCC
Q 001788 348 W--DL-QAVPIAAKTP 360 (1013)
Q Consensus 348 ~--rf-q~v~v~e~~~ 360 (1013)
| || ..|.|+- |+
T Consensus 309 RpgRfdr~i~v~~-Pd 323 (644)
T PRK10733 309 RPGRFDRQVVVGL-PD 323 (644)
T ss_pred CCcccceEEEcCC-CC
Confidence 5 77 5677776 53
No 274
>CHL00206 ycf2 Ycf2; Provisional
Probab=97.45 E-value=0.00025 Score=93.09 Aligned_cols=123 Identities=11% Similarity=0.010 Sum_probs=82.5
Q ss_pred ccCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-cc-cc----------------------------------
Q 001788 203 CGGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-FT-CD---------------------------------- 244 (1013)
Q Consensus 203 ~vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~~-~~---------------------------------- 244 (1013)
++|+| |||-+|++||.. .++.+++++.+ |. ++
T Consensus 1635 LiGPPGTGKTlLAKALA~e----------s~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~ 1704 (2281)
T CHL00206 1635 VIGSIGTGRSYLVKYLATN----------SYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTM 1704 (2281)
T ss_pred EECCCCCCHHHHHHHHHHh----------cCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhh
Confidence 59999 999999999976 45557777766 32 11
Q ss_pred ---------hhhhHHHHHHHHHHHHhhcCCCCceEEEecchhHHHhcccccCCCCCCCcchhhhhHHHHHHHHHHHHHhh
Q 001788 245 ---------KAGIVSKLKDLGALIETKFGNGDGVILDLGDLKWLVEQQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVAR 315 (1013)
Q Consensus 245 ---------rge~e~r~~~l~~~~~~~~~~~~~~il~idel~~l~~~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~ 315 (1013)
.++=..|+.++++.+++ ..|.||||||||.|...... ...+..+.+.|..
T Consensus 1705 ~n~~~~~m~~~e~~~rIr~lFelARk----~SPCIIFIDEIDaL~~~ds~-----------------~ltL~qLLneLDg 1763 (2281)
T CHL00206 1705 MNALTMDMMPKIDRFYITLQFELAKA----MSPCIIWIPNIHDLNVNESN-----------------YLSLGLLVNSLSR 1763 (2281)
T ss_pred cchhhhhhhhhhhHHHHHHHHHHHHH----CCCeEEEEEchhhcCCCccc-----------------eehHHHHHHHhcc
Confidence 11112358899999998 58999999999998654210 0012234444443
Q ss_pred hcC--CCCceEEEEecCHHHHHHhhhcCCCCCCCCCC-eeeeccCCCCCC
Q 001788 316 FGG--GGGRLWLIGTATCETYLRCQVYHPSMENDWDL-QAVPIAAKTPLS 362 (1013)
Q Consensus 316 ~~~--~~g~~~~IgatT~~~Y~k~~~~~~ale~~~rf-q~v~v~e~~~~~ 362 (1013)
..+ ....|-+||||..-. ..||||-..-|| +.|.|+- |+.+
T Consensus 1764 ~~~~~s~~~VIVIAATNRPD-----~LDPALLRPGRFDR~I~Ir~-Pd~p 1807 (2281)
T CHL00206 1764 DCERCSTRNILVIASTHIPQ-----KVDPALIAPNKLNTCIKIRR-LLIP 1807 (2281)
T ss_pred ccccCCCCCEEEEEeCCCcc-----cCCHhHcCCCCCCeEEEeCC-CCch
Confidence 321 234689999998754 679999444499 6788877 6543
No 275
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.43 E-value=0.0008 Score=74.77 Aligned_cols=109 Identities=12% Similarity=0.200 Sum_probs=63.0
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCC-----cccccccchhhhHHHHHHcCCCEEEEEeCCCCCC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEP-----EVRVRGKTALDKIGEAVKRNPFSVILLEDIDEAD 742 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~-----~~g~~G~~~~~~L~eal~~~p~~VV~lDEIdka~ 742 (1013)
+||+||+|+|||.+++..-+.+.........++++...... -.....+. .+..+.. ..+...|+|||++.-..
T Consensus 36 vLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~-~~~~~gP-~~~k~lv~fiDDlN~p~ 113 (272)
T PF12775_consen 36 VLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKR-RGRVYGP-PGGKKLVLFIDDLNMPQ 113 (272)
T ss_dssp EEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECEC-TTEEEEE-ESSSEEEEEEETTT-S-
T ss_pred EEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcC-CCCCCCC-CCCcEEEEEecccCCCC
Confidence 99999999999999987665554333234456665432100 00000000 0000000 11234689999997554
Q ss_pred H------HHHHHHHHHHHcceEecCCC-eEeecCceEEEEecC
Q 001788 743 M------VVRGNIKRAMERGRLVDSYG-REISLGNVIFILTAD 778 (1013)
Q Consensus 743 ~------~vq~~LL~~le~G~l~d~~g-~~vd~~n~iiI~TSN 778 (1013)
+ .....|.|+|+.|-+.|... .-..+.++.+|++.|
T Consensus 114 ~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~ 156 (272)
T PF12775_consen 114 PDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMN 156 (272)
T ss_dssp --TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEES
T ss_pred CCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecC
Confidence 3 25688899999988887543 345677888888776
No 276
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.41 E-value=0.00034 Score=79.46 Aligned_cols=87 Identities=17% Similarity=0.128 Sum_probs=64.3
Q ss_pred cCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccccccchhhhHHHHHHHHHHHHhhcCCCCceEEEecchhHHHh
Q 001788 204 GGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKDFTCDKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKWLVE 281 (1013)
Q Consensus 204 vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~~~~rge~e~r~~~l~~~~~~~~~~~~~~il~idel~~l~~ 281 (1013)
-|+| |||.+++-+|+. -++.|+.|+.-++|. ..++++++..++....+.+.||||||||.+=.
T Consensus 54 ~GPPG~GKTTlA~liA~~----------~~~~f~~~sAv~~gv-----kdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK 118 (436)
T COG2256 54 WGPPGTGKTTLARLIAGT----------TNAAFEALSAVTSGV-----KDLREIIEEARKNRLLGRRTILFLDEIHRFNK 118 (436)
T ss_pred ECCCCCCHHHHHHHHHHh----------hCCceEEeccccccH-----HHHHHHHHHHHHHHhcCCceEEEEehhhhcCh
Confidence 9999 999999998876 566788888654432 13555666665544457799999999999865
Q ss_pred cccccCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEecCHH
Q 001788 282 QQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATCE 332 (1013)
Q Consensus 282 ~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~IgatT~~ 332 (1013)
+.. ..|=|++ -+|.|.+|||||-.
T Consensus 119 ~QQ--------------------------D~lLp~v-E~G~iilIGATTEN 142 (436)
T COG2256 119 AQQ--------------------------DALLPHV-ENGTIILIGATTEN 142 (436)
T ss_pred hhh--------------------------hhhhhhh-cCCeEEEEeccCCC
Confidence 541 1345788 49999999999963
No 277
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.37 E-value=0.0015 Score=75.45 Aligned_cols=115 Identities=16% Similarity=0.153 Sum_probs=72.8
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCC--CceeeeCCCCCCCCC
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGAS--PIMIPLGPRRDHEEP 708 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~--~~~i~id~s~~~~~~ 708 (1013)
..++|.+.-+..+...+..+..+... ++ +.+.|-||+|||.+...+-..+.... ...+.++|.......
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~~t~----gS-----lYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLELNTS----GS-----LYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhcccC----cc-----eEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 46899999999988888776654222 23 99999999999998775544443222 234788887543210
Q ss_pred c----------ccccccchh----hhHHHHHHcCC-CEEEEEeCCCCCCHHHHHHHHHHHH
Q 001788 709 E----------VRVRGKTAL----DKIGEAVKRNP-FSVILLEDIDEADMVVRGNIKRAME 754 (1013)
Q Consensus 709 ~----------~g~~G~~~~----~~L~eal~~~p-~~VV~lDEIdka~~~vq~~LL~~le 754 (1013)
. -+.++...+ ..+......+. --|+++||+|.+...-|..|+.+++
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFe 281 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFE 281 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehh
Confidence 0 011121112 23334444433 3578999999998777777777776
No 278
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.30 E-value=0.0016 Score=75.47 Aligned_cols=125 Identities=12% Similarity=0.150 Sum_probs=84.1
Q ss_pred cCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-cc-cchhhhHHHHHHHHHHHHhhcCCCCceEEEecchhHH
Q 001788 204 GGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-FT-CDKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKWL 279 (1013)
Q Consensus 204 vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~~-~~rge~e~r~~~l~~~~~~~~~~~~~~il~idel~~l 279 (1013)
.|+| |||.+++.++..+ +..++.+..+ +. .|.|+.+..++++++.++. ..+.||||||++.+
T Consensus 162 ~GppGtGKT~lakaia~~l----------~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~il~iDEiD~l 227 (364)
T TIGR01242 162 YGPPGTGKTLLAKAVAHET----------NATFIRVVGSELVRKYIGEGARLVREIFELAKE----KAPSIIFIDEIDAI 227 (364)
T ss_pred ECCCCCCHHHHHHHHHHhC----------CCCEEecchHHHHHHhhhHHHHHHHHHHHHHHh----cCCcEEEhhhhhhh
Confidence 9999 9999999999874 3346666655 43 4788888889999998887 57899999999999
Q ss_pred HhcccccCCCCCCCcchhhhhHHHHHHHHHHHHHhh---hcCCCCceEEEEecCHHHHHHhhhcCCCCCCCCCCe-eeec
Q 001788 280 VEQQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVAR---FGGGGGRLWLIGTATCETYLRCQVYHPSMENDWDLQ-AVPI 355 (1013)
Q Consensus 280 ~~~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~---~~~~~g~~~~IgatT~~~Y~k~~~~~~ale~~~rfq-~v~v 355 (1013)
......... .+...+...+.++|.. +- ..+.+.+|+||+.-+ ..||++-..+||. .|.|
T Consensus 228 ~~~~~~~~~-----------~~~~~~~~~l~~ll~~ld~~~-~~~~v~vI~ttn~~~-----~ld~al~r~grfd~~i~v 290 (364)
T TIGR01242 228 AAKRTDSGT-----------SGDREVQRTLMQLLAELDGFD-PRGNVKVIAATNRPD-----ILDPALLRPGRFDRIIEV 290 (364)
T ss_pred ccccccCCC-----------CccHHHHHHHHHHHHHhhCCC-CCCCEEEEEecCChh-----hCChhhcCcccCceEEEe
Confidence 765422110 0111112234455543 32 367899999998653 3578884344774 5667
Q ss_pred cCCCC
Q 001788 356 AAKTP 360 (1013)
Q Consensus 356 ~e~~~ 360 (1013)
+. |+
T Consensus 291 ~~-P~ 294 (364)
T TIGR01242 291 PL-PD 294 (364)
T ss_pred CC-cC
Confidence 66 53
No 279
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=97.29 E-value=0.00027 Score=58.01 Aligned_cols=51 Identities=27% Similarity=0.562 Sum_probs=41.9
Q ss_pred HHHHHHhcCCCCCCCCchhhccchHHHHHHhccCC--chHHHHHhcCCChHHHHHHHHHhhc
Q 001788 109 AQAHQRRGCPEQQQQPLLAVKVELEQLIISILDDP--SVSRVMREASFSSPAVKATIEQSLN 168 (1013)
Q Consensus 109 A~~~a~~g~~e~~~~~~i~~kVe~ehLllaLl~d~--~~s~iL~~~g~~~~~ik~~i~~~~~ 168 (1013)
|+..|++ ++|+||++ +|||+||++++ .+.++|+++|++.++++..+++.+|
T Consensus 1 A~~~A~~-----~~~~~i~~----eHlL~all~~~~~~~~~il~~~~id~~~l~~~i~~~lg 53 (53)
T PF02861_consen 1 AQELARE-----RGHQYISP----EHLLLALLEDPDSIAARILKKLGIDPEQLKAAIEKALG 53 (53)
T ss_dssp HHHHHHH-----TTBSSE-H----HHHHHHHHHHTTSHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred CHHHHHH-----cCCCcccH----HHHHHHHHhhhhHHHHHHHHHcCCCHHHHHHHHHHHhC
Confidence 4556665 78998775 99999999876 4589999999999999999988764
No 280
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.00046 Score=75.19 Aligned_cols=103 Identities=9% Similarity=0.125 Sum_probs=76.8
Q ss_pred cCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-cc-cchhhhHHHHHHHHHHHHhhcCCCCceEEEecchhHH
Q 001788 204 GGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-FT-CDKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKWL 279 (1013)
Q Consensus 204 vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~~-~~rge~e~r~~~l~~~~~~~~~~~~~~il~idel~~l 279 (1013)
-|+| ||.-+++++|.. .|-+|++++.+ +. -.-||-|.=+++|++.+++ +++.|||||||..+
T Consensus 172 yGPPGTGKSYLAKAVATE----------AnSTFFSvSSSDLvSKWmGESEkLVknLFemARe----~kPSIIFiDEiDsl 237 (439)
T KOG0739|consen 172 YGPPGTGKSYLAKAVATE----------ANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARE----NKPSIIFIDEIDSL 237 (439)
T ss_pred eCCCCCcHHHHHHHHHhh----------cCCceEEeehHHHHHHHhccHHHHHHHHHHHHHh----cCCcEEEeehhhhh
Confidence 9999 999999999876 77899999988 54 4889999999999999999 79999999999999
Q ss_pred HhcccccCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEecCH
Q 001788 280 VEQQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATC 331 (1013)
Q Consensus 280 ~~~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~IgatT~ 331 (1013)
.+.+..+ + .+.++++-.|..=-+...+.....+-++|||+.
T Consensus 238 cg~r~en----E-------seasRRIKTEfLVQMqGVG~d~~gvLVLgATNi 278 (439)
T KOG0739|consen 238 CGSRSEN----E-------SEASRRIKTEFLVQMQGVGNDNDGVLVLGATNI 278 (439)
T ss_pred ccCCCCC----c-------hHHHHHHHHHHHHhhhccccCCCceEEEecCCC
Confidence 8877432 2 234444333332223333322446888999954
No 281
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.23 E-value=0.00038 Score=82.07 Aligned_cols=143 Identities=16% Similarity=0.175 Sum_probs=85.4
Q ss_pred HhccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCC
Q 001788 629 LMEKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEP 708 (1013)
Q Consensus 629 L~~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~ 708 (1013)
+--.|+|+..+..+|+-++.-.... ++....--++|+.+||+|.|||||+.+.|..++...+ .++.-.-. .+
T Consensus 447 iaPsIyGh~~VK~AvAlaLfGGv~k-n~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~R---AV~tTGqG----AS 518 (854)
T KOG0477|consen 447 IAPSIYGHEDVKRAVALALFGGVPK-NPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPR---AVFTTGQG----AS 518 (854)
T ss_pred hCchhhchHHHHHHHHHHHhcCCcc-CCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcc---eeEeccCC----cc
Confidence 3345899988888877777522111 1111111357888999999999999999999987652 22222111 11
Q ss_pred cccccccchhhhH-------HHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEe--ecCceEEEEecCC
Q 001788 709 EVRVRGKTALDKI-------GEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREI--SLGNVIFILTADW 779 (1013)
Q Consensus 709 ~~g~~G~~~~~~L-------~eal~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~v--d~~n~iiI~TSN~ 779 (1013)
..|..-+.....+ .+|+--...+|.+|||+|||+..-...+-++||...+.-++--.| =-..|.+|+++|-
T Consensus 519 avGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArctvIAAanP 598 (854)
T KOG0477|consen 519 AVGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANP 598 (854)
T ss_pred ccceeEEEeeCCccceeeeccCeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhhhheecCC
Confidence 1122111111000 112222345789999999999988889999999888776542111 1233558888883
No 282
>PF05729 NACHT: NACHT domain
Probab=97.21 E-value=0.0027 Score=63.92 Aligned_cols=78 Identities=15% Similarity=0.221 Sum_probs=46.6
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCC------CceeeeCCCCCCCCCcc----ccc---ccch----hhhHHHHHHcCCC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGAS------PIMIPLGPRRDHEEPEV----RVR---GKTA----LDKIGEAVKRNPF 730 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~------~~~i~id~s~~~~~~~~----g~~---G~~~----~~~L~eal~~~p~ 730 (1013)
+++.|++|+|||++++.++..+.... ...+.+.+..+...... .+. .... ...+.......+.
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNKR 82 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCCc
Confidence 89999999999999999998776542 12234444433221110 000 0000 1123344556677
Q ss_pred EEEEEeCCCCCCHHH
Q 001788 731 SVILLEDIDEADMVV 745 (1013)
Q Consensus 731 ~VV~lDEIdka~~~v 745 (1013)
-+|+||.+|.+....
T Consensus 83 ~llilDglDE~~~~~ 97 (166)
T PF05729_consen 83 VLLILDGLDELEEQD 97 (166)
T ss_pred eEEEEechHhcccch
Confidence 789999999987643
No 283
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.16 E-value=0.00081 Score=72.19 Aligned_cols=121 Identities=12% Similarity=0.079 Sum_probs=89.5
Q ss_pred CcCCCcccccCCCcccCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-ccc-chhhhHHHHHHHHHHHHhhcC
Q 001788 189 NLYMNPRLQQAGGVCGGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-FTC-DKAGIVSKLKDLGALIETKFG 264 (1013)
Q Consensus 189 ~~~~np~l~~~~~~~vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~~~-~rge~e~r~~~l~~~~~~~~~ 264 (1013)
+.-.|.+. -|.| |||..+++||.. ..+.++.+... +-| +-|+=..|+.+|...+++
T Consensus 149 WAPknVLF-------yGppGTGKTm~Akalane----------~kvp~l~vkat~liGehVGdgar~Ihely~rA~~--- 208 (368)
T COG1223 149 WAPKNVLF-------YGPPGTGKTMMAKALANE----------AKVPLLLVKATELIGEHVGDGARRIHELYERARK--- 208 (368)
T ss_pred cCcceeEE-------ECCCCccHHHHHHHHhcc----------cCCceEEechHHHHHHHhhhHHHHHHHHHHHHHh---
Confidence 34468888 9999 999999999965 34447877776 656 999999999999999999
Q ss_pred CCCceEEEecchhHHHhcccccCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcC---CCCceEEEEecCHHHHHHhhhcC
Q 001788 265 NGDGVILDLGDLKWLVEQQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGG---GGGRLWLIGTATCETYLRCQVYH 341 (1013)
Q Consensus 265 ~~~~~il~idel~~l~~~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~---~~g~~~~IgatT~~~Y~k~~~~~ 341 (1013)
..+.|+||||+..+.=+.. |+..+-=|+|+-|.|=--++ .+-.|..||||+.-+ ..|
T Consensus 209 -~aPcivFiDE~DAiaLdRr--------------yQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~-----~LD 268 (368)
T COG1223 209 -AAPCIVFIDELDAIALDRR--------------YQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPE-----LLD 268 (368)
T ss_pred -cCCeEEEehhhhhhhhhhh--------------HHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChh-----hcC
Confidence 5899999999998876542 33344435555554433332 245788999998765 468
Q ss_pred CCCCCCCCCe
Q 001788 342 PSMENDWDLQ 351 (1013)
Q Consensus 342 ~ale~~~rfq 351 (1013)
||+ .-||.
T Consensus 269 ~ai--RsRFE 276 (368)
T COG1223 269 PAI--RSRFE 276 (368)
T ss_pred HHH--Hhhhh
Confidence 888 77774
No 284
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.13 E-value=0.0035 Score=72.77 Aligned_cols=97 Identities=18% Similarity=0.236 Sum_probs=60.9
Q ss_pred EEEeccCCCccchHHHHHHHH-hcCCCCceeeeCCCCCCCCCcccccccchhhhHHHHHHcCCCEEEEEeCCCCCC----
Q 001788 668 LLFMGPDRVGKKKMASALSEL-VSGASPIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKRNPFSVILLEDIDEAD---- 742 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~-l~~~~~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~~p~~VV~lDEIdka~---- 742 (1013)
+++.||+|||||.+|.+|+.. ...+. -|+ ..+.++.. ......+.+ ....+|+|||+..++
T Consensus 212 li~lGp~GTGKThla~~l~~~~a~~sG-~f~----------T~a~Lf~~-L~~~~lg~v--~~~DlLI~DEvgylp~~~~ 277 (449)
T TIGR02688 212 LIELGPKGTGKSYIYNNLSPYVILISG-GTI----------TVAKLFYN-ISTRQIGLV--GRWDVVAFDEVATLKFAKP 277 (449)
T ss_pred EEEECCCCCCHHHHHHHHhHHHHHHcC-CcC----------cHHHHHHH-HHHHHHhhh--ccCCEEEEEcCCCCcCCch
Confidence 999999999999999998876 22110 000 00001100 000111111 234799999998853
Q ss_pred HHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCC
Q 001788 743 MVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWL 780 (1013)
Q Consensus 743 ~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g 780 (1013)
.+..+.|...|++|.++.+. ..-..++=+||.-|+.
T Consensus 278 ~~~v~imK~yMesg~fsRG~--~~~~a~as~vfvGNi~ 313 (449)
T TIGR02688 278 KELIGILKNYMESGSFTRGD--ETKSSDASFVFLGNVP 313 (449)
T ss_pred HHHHHHHHHHHHhCceeccc--eeeeeeeEEEEEcccC
Confidence 45778999999999998644 3334566688888874
No 285
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.10 E-value=0.0017 Score=68.76 Aligned_cols=89 Identities=20% Similarity=0.326 Sum_probs=54.6
Q ss_pred ceEEEeccCCCccchHHHHHHHHhcCC-CCceeeeC-CCCCCCCCc--------ccccccchhhhHHHHHHcCCCEEEEE
Q 001788 666 MWLLFMGPDRVGKKKMASALSELVSGA-SPIMIPLG-PRRDHEEPE--------VRVRGKTALDKIGEAVKRNPFSVILL 735 (1013)
Q Consensus 666 ~~lLf~Gp~GvGKT~lAr~LA~~l~~~-~~~~i~id-~s~~~~~~~--------~g~~G~~~~~~L~eal~~~p~~VV~l 735 (1013)
+.++|.||+|+|||+++++|...+... ...++.+. .-++..... .+.........+..+++..| .+|++
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~p-d~ii~ 80 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDP-DVILV 80 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCc-CEEEE
Confidence 359999999999999999998887532 22222222 112211100 01111223344556677766 79999
Q ss_pred eCCCCCCHHHHHHHHHHHHcce
Q 001788 736 EDIDEADMVVRGNIKRAMERGR 757 (1013)
Q Consensus 736 DEIdka~~~vq~~LL~~le~G~ 757 (1013)
||+. +++....++++...|.
T Consensus 81 gEir--d~e~~~~~l~~a~~G~ 100 (198)
T cd01131 81 GEMR--DLETIRLALTAAETGH 100 (198)
T ss_pred cCCC--CHHHHHHHHHHHHcCC
Confidence 9995 5667777778877665
No 286
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.06 E-value=0.0036 Score=72.61 Aligned_cols=120 Identities=18% Similarity=0.265 Sum_probs=80.5
Q ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHhhhhc-C--CCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceee
Q 001788 622 FKRLLKSLMEKVWWQQEAASAVATTVTQCKLGN-G--KRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIP 698 (1013)
Q Consensus 622 l~~L~~~L~~~ViGQ~~ai~~I~~ai~~~~~g~-~--~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~ 698 (1013)
...|.+.+.-+|+|+.++.+.+.-.+. |- . +..+.--++++.+++.|.||+.|+.|.+.+.+.-.++
T Consensus 333 yekLa~SiAPEIyGheDVKKaLLLlLV----Ggvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRg------ 402 (721)
T KOG0482|consen 333 YEKLAASIAPEIYGHEDVKKALLLLLV----GGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRG------ 402 (721)
T ss_pred HHHHHHhhchhhccchHHHHHHHHHhh----CCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCccc------
Confidence 456677777889999988777665553 32 2 2233334678889999999999999999998876432
Q ss_pred eCCCCCCCCCcccccccchhhhHHHHHHc----------------CCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecC
Q 001788 699 LGPRRDHEEPEVRVRGKTALDKIGEAVKR----------------NPFSVILLEDIDEADMVVRGNIKRAMERGRLVDS 761 (1013)
Q Consensus 699 id~s~~~~~~~~g~~G~~~~~~L~eal~~----------------~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~ 761 (1013)
.|..|--..-+ .|+.++.+ ...+|..|||+|||+..-...+-++||...+.-+
T Consensus 403 ----vYTTGrGSSGV------GLTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIa 471 (721)
T KOG0482|consen 403 ----VYTTGRGSSGV------GLTAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTISIA 471 (721)
T ss_pred ----ceecCCCCCcc------ccchhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhh
Confidence 22222100001 12222222 2346889999999999999999999998766543
No 287
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.002 Score=77.37 Aligned_cols=126 Identities=12% Similarity=0.147 Sum_probs=101.3
Q ss_pred cCCCcccccCCCcccCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-c-ccchhhhHHHHHHHHHHHHhhcCC
Q 001788 190 LYMNPRLQQAGGVCGGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-F-TCDKAGIVSKLKDLGALIETKFGN 265 (1013)
Q Consensus 190 ~~~np~l~~~~~~~vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~-~~~rge~e~r~~~l~~~~~~~~~~ 265 (1013)
...+.+| -|.| |||-++..+|.. -+.+|+++-.. + +-|-|.-|+.+.+|+..+++
T Consensus 700 ~~~giLL-------yGppGcGKT~la~a~a~~----------~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~---- 758 (952)
T KOG0735|consen 700 LRTGILL-------YGPPGCGKTLLASAIASN----------SNLRFISVKGPELLSKYIGASEQNVRDLFERAQS---- 758 (952)
T ss_pred cccceEE-------ECCCCCcHHHHHHHHHhh----------CCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhc----
Confidence 3445666 9999 999999998876 88999999877 4 56999999999999999998
Q ss_pred CCceEEEecchhHHHhcccccCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEecCHHHHHHhhhcCCCCC
Q 001788 266 GDGVILDLGDLKWLVEQQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATCETYLRCQVYHPSME 345 (1013)
Q Consensus 266 ~~~~il~idel~~l~~~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~IgatT~~~Y~k~~~~~~ale 345 (1013)
.+|.|||+||...++...++.+ ++.-.++|.++..=|.++- +-..|.++||||.-. -.||||=
T Consensus 759 a~PCiLFFDEfdSiAPkRGhDs-----------TGVTDRVVNQlLTelDG~E-gl~GV~i~aaTsRpd-----liDpALL 821 (952)
T KOG0735|consen 759 AKPCILFFDEFDSIAPKRGHDS-----------TGVTDRVVNQLLTELDGAE-GLDGVYILAATSRPD-----LIDPALL 821 (952)
T ss_pred cCCeEEEeccccccCcccCCCC-----------CCchHHHHHHHHHhhcccc-ccceEEEEEecCCcc-----ccCHhhc
Confidence 4999999999999999876422 3467888888877777665 344799999998765 4689996
Q ss_pred CCCCCeee
Q 001788 346 NDWDLQAV 353 (1013)
Q Consensus 346 ~~~rfq~v 353 (1013)
..-||...
T Consensus 822 RpGRlD~~ 829 (952)
T KOG0735|consen 822 RPGRLDKL 829 (952)
T ss_pred CCCcccee
Confidence 66677443
No 288
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.0034 Score=70.88 Aligned_cols=118 Identities=11% Similarity=0.115 Sum_probs=88.2
Q ss_pred CcccccCCCcccCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-ccc-chhhhHHHHHHHHHHHHhhcCCCCc
Q 001788 193 NPRLQQAGGVCGGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-FTC-DKAGIVSKLKDLGALIETKFGNGDG 268 (1013)
Q Consensus 193 np~l~~~~~~~vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~~~-~rge~e~r~~~l~~~~~~~~~~~~~ 268 (1013)
+.+| -|+| |||.+++.+|.+ +|+.++.++++ +.. -.||-+.=++.++-.+... .|
T Consensus 129 GiLL-------~GPpG~GKTmlAKA~Ake----------aga~fInv~~s~lt~KWfgE~eKlv~AvFslAsKl----~P 187 (386)
T KOG0737|consen 129 GILL-------YGPPGTGKTMLAKAIAKE----------AGANFINVSVSNLTSKWFGEAQKLVKAVFSLASKL----QP 187 (386)
T ss_pred ccee-------cCCCCchHHHHHHHHHHH----------cCCCcceeeccccchhhHHHHHHHHHHHHhhhhhc----Cc
Confidence 5777 9999 999999999988 89999999999 654 5599998888998888874 89
Q ss_pred eEEEecchhHHHhcccccCCCCCCCcchhhhhHHHHHHHHHHHHHh--------hhcCCCC--ceEEEEecCH--HHHHH
Q 001788 269 VILDLGDLKWLVEQQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVA--------RFGGGGG--RLWLIGTATC--ETYLR 336 (1013)
Q Consensus 269 ~il~idel~~l~~~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk--------~~~~~~g--~~~~IgatT~--~~Y~k 336 (1013)
.||||||+..+++...+ .+| |+...+| ... +.+ +|-++|||+. +.-..
T Consensus 188 ~iIFIDEvds~L~~R~s----------------~dH---Ea~a~mK~eFM~~WDGl~-s~~~~rVlVlgATNRP~DlDeA 247 (386)
T KOG0737|consen 188 SIIFIDEVDSFLGQRRS----------------TDH---EATAMMKNEFMALWDGLS-SKDSERVLVLGATNRPFDLDEA 247 (386)
T ss_pred ceeehhhHHHHHhhccc----------------chH---HHHHHHHHHHHHHhcccc-CCCCceEEEEeCCCCCccHHHH
Confidence 99999999999998832 133 4555554 333 333 5999999964 33334
Q ss_pred hhhcCCCCCCCCCCeeeeccC
Q 001788 337 CQVYHPSMENDWDLQAVPIAA 357 (1013)
Q Consensus 337 ~~~~~~ale~~~rfq~v~v~e 357 (1013)
.+++ | .+||| |.+|.
T Consensus 248 iiRR---~--p~rf~-V~lP~ 262 (386)
T KOG0737|consen 248 IIRR---L--PRRFH-VGLPD 262 (386)
T ss_pred HHHh---C--cceee-eCCCc
Confidence 4433 3 56677 66665
No 289
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.84 E-value=0.028 Score=72.68 Aligned_cols=106 Identities=19% Similarity=0.227 Sum_probs=72.9
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCC--cccccccc------hhhhHHHHHHcCCCEEEEEeCCC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEP--EVRVRGKT------ALDKIGEAVKRNPFSVILLEDID 739 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~--~~g~~G~~------~~~~L~eal~~~p~~VV~lDEId 739 (1013)
+|+.||+.+|||.+...||+... ..||+||-.+..+.. .-.|+..+ ..|.|.+|+++. --|+|||..
T Consensus 891 ~LiQGpTSSGKTSMI~yla~~tg---hkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G--yWIVLDELN 965 (4600)
T COG5271 891 LLIQGPTSSGKTSMILYLARETG---HKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG--YWIVLDELN 965 (4600)
T ss_pred EEEecCCCCCcchHHHHHHHHhC---ccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC--cEEEeeccc
Confidence 99999999999999999999987 689999865533210 00022111 236789998764 468899999
Q ss_pred CCCHHHHHHHHHHHHcc-eEecCCCeEe--ecCceEEEEecC
Q 001788 740 EADMVVRGNIKRAMERG-RLVDSYGREI--SLGNVIFILTAD 778 (1013)
Q Consensus 740 ka~~~vq~~LL~~le~G-~l~d~~g~~v--d~~n~iiI~TSN 778 (1013)
-|+.+|+..|-+++++. .+.-+..+++ ...+-.+.+|-|
T Consensus 966 LApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQN 1007 (4600)
T COG5271 966 LAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQN 1007 (4600)
T ss_pred cCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecC
Confidence 99999999999999754 3443444333 233333444444
No 290
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.0026 Score=78.32 Aligned_cols=130 Identities=12% Similarity=0.162 Sum_probs=89.0
Q ss_pred ccCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-c-ccchhhhHHHHHHHHHHHHhhcCCCCceEEEecchhH
Q 001788 203 CGGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-F-TCDKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKW 278 (1013)
Q Consensus 203 ~vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~-~~~rge~e~r~~~l~~~~~~~~~~~~~~il~idel~~ 278 (1013)
++|+| |||-+++++|-. .|+-|++++.+ | .++.|-=..|+.+|+..++. ..|.|+|||||..
T Consensus 349 L~GPPGTGKTLLAKAiAGE----------AgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar~----~aP~iifideida 414 (774)
T KOG0731|consen 349 LVGPPGTGKTLLAKAIAGE----------AGVPFFSVSGSEFVEMFVGVGASRVRDLFPLARK----NAPSIIFIDEIDA 414 (774)
T ss_pred EECCCCCcHHHHHHHHhcc----------cCCceeeechHHHHHHhcccchHHHHHHHHHhhc----cCCeEEEeccccc
Confidence 39999 999999988854 77789999999 6 46655559999999999999 6999999999998
Q ss_pred HHhccc---ccCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEecCHHHHHHhhhcCCCCCCCCCC-eeee
Q 001788 279 LVEQQV---TSFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATCETYLRCQVYHPSMENDWDL-QAVP 354 (1013)
Q Consensus 279 l~~~~~---~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~IgatT~~~Y~k~~~~~~ale~~~rf-q~v~ 354 (1013)
+..... .+.|..+++ .+.. ++.-=+..+. ..+.+-+|++|..-. ..||||-.--|| ..|.
T Consensus 415 ~~~~r~G~~~~~~~~e~e------~tln----Qll~emDgf~-~~~~vi~~a~tnr~d-----~ld~allrpGRfdr~i~ 478 (774)
T KOG0731|consen 415 VGRKRGGKGTGGGQDERE------QTLN----QLLVEMDGFE-TSKGVIVLAATNRPD-----ILDPALLRPGRFDRQIQ 478 (774)
T ss_pred ccccccccccCCCChHHH------HHHH----HHHHHhcCCc-CCCcEEEEeccCCcc-----ccCHHhcCCCcccccee
Confidence 877762 222211111 1111 2333335555 577899999997633 356666444455 3456
Q ss_pred ccCCCCCCC
Q 001788 355 IAAKTPLSG 363 (1013)
Q Consensus 355 v~e~~~~~g 363 (1013)
|.. |+..|
T Consensus 479 i~~-p~~~~ 486 (774)
T KOG0731|consen 479 IDL-PDVKG 486 (774)
T ss_pred ccC-Cchhh
Confidence 666 65443
No 291
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.0015 Score=70.97 Aligned_cols=118 Identities=10% Similarity=0.126 Sum_probs=82.4
Q ss_pred cCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-cc-cchhhhHHHHHHHHHHHHhhcCCCCceEEEecchhHH
Q 001788 204 GGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-FT-CDKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKWL 279 (1013)
Q Consensus 204 vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~~-~~rge~e~r~~~l~~~~~~~~~~~~~~il~idel~~l 279 (1013)
-|+| |||-+++++|.. -.+.|+.+--+ +. -|-||=-.=..+|++.+++ ..+.|+|||||..+
T Consensus 225 yG~PGTGKTLLAKAVANq----------TSATFlRvvGseLiQkylGdGpklvRqlF~vA~e----~apSIvFiDEIdAi 290 (440)
T KOG0726|consen 225 YGEPGTGKTLLAKAVANQ----------TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEE----HAPSIVFIDEIDAI 290 (440)
T ss_pred eCCCCCchhHHHHHHhcc----------cchhhhhhhhHHHHHHHhccchHHHHHHHHHHHh----cCCceEEeehhhhh
Confidence 9999 999999999865 45556665544 32 3777777778899999998 69999999999977
Q ss_pred Hhcccc-cCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEecCHHHHHHhhhcCCCCCCCCCC
Q 001788 280 VEQQVT-SFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATCETYLRCQVYHPSMENDWDL 350 (1013)
Q Consensus 280 ~~~~~~-~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~IgatT~~~Y~k~~~~~~ale~~~rf 350 (1013)
-...-. .+| .-++.+-... |+.|-|..+- +||+|.+|-||+.=+ ..||||-..-|.
T Consensus 291 GtKRyds~Sg-----gerEiQrtmL----ELLNQldGFd-srgDvKvimATnrie-----~LDPaLiRPGrI 347 (440)
T KOG0726|consen 291 GTKRYDSNSG-----GEREIQRTML----ELLNQLDGFD-SRGDVKVIMATNRIE-----TLDPALIRPGRI 347 (440)
T ss_pred ccccccCCCc-----cHHHHHHHHH----HHHHhccCcc-ccCCeEEEEeccccc-----ccCHhhcCCCcc
Confidence 554421 111 1122221222 7888888888 899999999997633 468888443344
No 292
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.81 E-value=0.004 Score=62.21 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=27.3
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPR 702 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s 702 (1013)
++++||+|+|||+++..++........+.+.+++.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e 36 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE 36 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 78999999999999999998875444455555543
No 293
>PRK14974 cell division protein FtsY; Provisional
Probab=96.74 E-value=0.015 Score=66.46 Aligned_cols=109 Identities=15% Similarity=0.160 Sum_probs=62.4
Q ss_pred ceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCC-------------c--ccccccchhhhHHHHH---Hc
Q 001788 666 MWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEP-------------E--VRVRGKTALDKIGEAV---KR 727 (1013)
Q Consensus 666 ~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~-------------~--~g~~G~~~~~~L~eal---~~ 727 (1013)
.+++|+||+|+|||+++..||..+......+.-+++..|..++ + .++.|.+....+.+++ +.
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~ 220 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKA 220 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHh
Confidence 4699999999999999999998776544444445554442111 0 0111211112223333 33
Q ss_pred CCCEEEEEeCCCCCC--HHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcch
Q 001788 728 NPFSVILLEDIDEAD--MVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSL 784 (1013)
Q Consensus 728 ~p~~VV~lDEIdka~--~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~ 784 (1013)
..+.+|++|....++ ......|..+.+.- .-..+++|+.+..|.+.+
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~----------~pd~~iLVl~a~~g~d~~ 269 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVT----------KPDLVIFVGDALAGNDAV 269 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhh----------CCceEEEeeccccchhHH
Confidence 556799999999995 45555555554311 112345676666655443
No 294
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.0046 Score=66.10 Aligned_cols=107 Identities=12% Similarity=0.148 Sum_probs=76.8
Q ss_pred cCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-ccc-chhhhHHHHHHHHHHHHhhcCCCCceEEEecchhHH
Q 001788 204 GGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-FTC-DKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKWL 279 (1013)
Q Consensus 204 vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~~~-~rge~e~r~~~l~~~~~~~~~~~~~~il~idel~~l 279 (1013)
-|+| |||.+++++|.- .-+.++.+..+ |.. |-||=-.-..++++.+++ +.+.|+|||||..+
T Consensus 195 ygppg~gktml~kava~~----------t~a~firvvgsefvqkylgegprmvrdvfrlake----napsiifideidai 260 (408)
T KOG0727|consen 195 YGPPGTGKTMLAKAVANH----------TTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKE----NAPSIIFIDEIDAI 260 (408)
T ss_pred eCCCCCcHHHHHHHHhhc----------cchheeeeccHHHHHHHhccCcHHHHHHHHHHhc----cCCcEEEeehhhhH
Confidence 8999 999999999976 45567877777 653 778777778999999999 79999999999999
Q ss_pred Hhcccc-cCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEecCH-HHH
Q 001788 280 VEQQVT-SFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATC-ETY 334 (1013)
Q Consensus 280 ~~~~~~-~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~IgatT~-~~Y 334 (1013)
+-..-. ..| .-+ -..++..|+.|-+.++- -.-.+.+|-||+. ++.
T Consensus 261 atkrfdaqtg-----adr----evqril~ellnqmdgfd-q~~nvkvimatnradtl 307 (408)
T KOG0727|consen 261 ATKRFDAQTG-----ADR----EVQRILIELLNQMDGFD-QTTNVKVIMATNRADTL 307 (408)
T ss_pred hhhhcccccc-----ccH----HHHHHHHHHHHhccCcC-cccceEEEEecCccccc
Confidence 766421 111 011 12233335555555555 4668999999987 553
No 295
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.0032 Score=76.10 Aligned_cols=129 Identities=13% Similarity=0.227 Sum_probs=90.1
Q ss_pred cCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-cc-cchhhhHHHHHHHHHHHHhhcCCCCceEEEecchhHH
Q 001788 204 GGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-FT-CDKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKWL 279 (1013)
Q Consensus 204 vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~~-~~rge~e~r~~~l~~~~~~~~~~~~~~il~idel~~l 279 (1013)
||+| |||-+++..|-. .++.+++.+-+ |. ++-|-=..|..+++..+++ ..+.|+|||||..+
T Consensus 189 vGpPGTGKTLLAkAvAgE----------A~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk----~aP~IIFIDEiDAv 254 (596)
T COG0465 189 VGPPGTGKTLLAKAVAGE----------AGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKK----NAPCIIFIDEIDAV 254 (596)
T ss_pred ecCCCCCcHHHHHHHhcc----------cCCCceeccchhhhhhhcCCCcHHHHHHHHHhhc----cCCCeEEEehhhhc
Confidence 9999 999998888843 55568888877 53 5555556789999999998 68999999999988
Q ss_pred HhcccccCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcC--CCCceEEEEecCHHHHHHhhhcCCCCCCCCCC-eeeecc
Q 001788 280 VEQQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGG--GGGRLWLIGTATCETYLRCQVYHPSMENDWDL-QAVPIA 356 (1013)
Q Consensus 280 ~~~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~--~~g~~~~IgatT~~~Y~k~~~~~~ale~~~rf-q~v~v~ 356 (1013)
-...+.+.|+.++. -++ -+..||-.+=+ ++..|-+|+||+..+ ..||||=...|| ..|.|+
T Consensus 255 Gr~Rg~g~Gggnde--------rEQ---TLNQlLvEmDGF~~~~gviviaaTNRpd-----VlD~ALlRpgRFDRqI~V~ 318 (596)
T COG0465 255 GRQRGAGLGGGNDE--------REQ---TLNQLLVEMDGFGGNEGVIVIAATNRPD-----VLDPALLRPGRFDRQILVE 318 (596)
T ss_pred ccccCCCCCCCchH--------HHH---HHHHHHhhhccCCCCCceEEEecCCCcc-----cchHhhcCCCCcceeeecC
Confidence 77775543322211 111 24445443331 344799999999876 568888666677 668888
Q ss_pred CCCCCCC
Q 001788 357 AKTPLSG 363 (1013)
Q Consensus 357 e~~~~~g 363 (1013)
- |+..|
T Consensus 319 ~-PDi~g 324 (596)
T COG0465 319 L-PDIKG 324 (596)
T ss_pred C-cchhh
Confidence 7 75443
No 296
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.65 E-value=0.0055 Score=70.52 Aligned_cols=88 Identities=20% Similarity=0.349 Sum_probs=56.2
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCC-CCceeeeC-CCCCCCCC--------cccccccchhhhHHHHHHcCCCEEEEEe
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGA-SPIMIPLG-PRRDHEEP--------EVRVRGKTALDKIGEAVKRNPFSVILLE 736 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~-~~~~i~id-~s~~~~~~--------~~g~~G~~~~~~L~eal~~~p~~VV~lD 736 (1013)
.++|.||+|+|||++.++|.+.+... ...++.+. .-++.... ..|+...+....+..+++..| .+|++|
T Consensus 124 ~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~p-d~i~vg 202 (343)
T TIGR01420 124 LILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDP-DVILIG 202 (343)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCC-CEEEEe
Confidence 39999999999999999999877532 22333332 22221100 012222233445666777777 899999
Q ss_pred CCCCCCHHHHHHHHHHHHcce
Q 001788 737 DIDEADMVVRGNIKRAMERGR 757 (1013)
Q Consensus 737 EIdka~~~vq~~LL~~le~G~ 757 (1013)
|+- +++.....+++..+|.
T Consensus 203 Eir--d~~~~~~~l~aa~tGh 221 (343)
T TIGR01420 203 EMR--DLETVELALTAAETGH 221 (343)
T ss_pred CCC--CHHHHHHHHHHHHcCC
Confidence 996 6777777777777665
No 297
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.64 E-value=0.031 Score=66.04 Aligned_cols=50 Identities=24% Similarity=0.282 Sum_probs=34.6
Q ss_pred ccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhc
Q 001788 635 WQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVS 690 (1013)
Q Consensus 635 GQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~ 690 (1013)
=+..-|.+|..++..+.. ..+.-+ .-++|++||+|||||+..+.|++.+.
T Consensus 86 VHkkKI~eVk~WL~~~~~-~~~~l~-----~~iLLltGPsGcGKSTtvkvLskelg 135 (634)
T KOG1970|consen 86 VHKKKISEVKQWLKQVAE-FTPKLG-----SRILLLTGPSGCGKSTTVKVLSKELG 135 (634)
T ss_pred hhHHhHHHHHHHHHHHHH-hccCCC-----ceEEEEeCCCCCCchhHHHHHHHhhC
Confidence 345556777777772222 222211 12499999999999999999999986
No 298
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.63 E-value=0.0099 Score=76.50 Aligned_cols=104 Identities=21% Similarity=0.173 Sum_probs=82.7
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCC---------CCcccccccchhhhHHHHHHcCCCEEEEEeCC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHE---------EPEVRVRGKTALDKIGEAVKRNPFSVILLEDI 738 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~---------~~~~g~~G~~~~~~L~eal~~~p~~VV~lDEI 738 (1013)
+++.|+-|+|||.+...|+..++ ..+|.|+.++..+ .+.||-+.+ ..|.|++++.. +.-|+|..|
T Consensus 152 I~l~g~~gsgksfLisel~~~~G---~~iV~Ihl~e~TDak~LiGtYts~KpG~fEw-~~GvL~~avv~--G~WILf~~I 225 (4600)
T COG5271 152 IYLEGGRGSGKSFLISELCDEGG---QRIVEIHLREITDAKVLIGTYTSPKPGDFEW-MKGVLIEAVVS--GDWILFKRI 225 (4600)
T ss_pred eEEecCccccHHHHHHHHHHHhC---ceEEEEecccccCchheeeeccCCCCCceee-ccchhhhhhhc--CcEEEEeec
Confidence 99999999999999999999986 5788888876543 123444433 34678888754 468999999
Q ss_pred CCCCHHHHHHHHHHHHcceEec-CCCeEeecCceEEEEec
Q 001788 739 DEADMVVRGNIKRAMERGRLVD-SYGREISLGNVIFILTA 777 (1013)
Q Consensus 739 dka~~~vq~~LL~~le~G~l~d-~~g~~vd~~n~iiI~TS 777 (1013)
||+|.+++..|+.+++..++.- +.|.+|-..+.+-|+.|
T Consensus 226 dkap~~vLs~Ll~llekR~L~ipsrGEtV~A~~~Fqif~T 265 (4600)
T COG5271 226 DKAPHGVLSYLLTLLEKRRLLIPSRGETVLAHDNFQIFFT 265 (4600)
T ss_pred ccCchhHHHHHHHHHHhhhhccCCCCceEEecCCEEEEEe
Confidence 9999999999999999999886 78888887776655554
No 299
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.62 E-value=0.024 Score=66.59 Aligned_cols=156 Identities=11% Similarity=0.093 Sum_probs=84.5
Q ss_pred CHHHHHHHHHHHhccccccH---------HHHHHHHHHHHHhhhhcCC-CCCCCCCCCceEEEeccCCCccchHHHHHHH
Q 001788 618 DPDSFKRLLKSLMEKVWWQQ---------EAASAVATTVTQCKLGNGK-RRGAGSKGDMWLLFMGPDRVGKKKMASALSE 687 (1013)
Q Consensus 618 d~e~l~~L~~~L~~~ViGQ~---------~ai~~I~~ai~~~~~g~~~-~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~ 687 (1013)
+..-.+.+.+.+++++.|++ ..++.+...+.....+..+ -.+ ..++..+++|+|++|+|||+++..||.
T Consensus 44 ~~~vv~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~~L~~~l~~~~~~~~~-~~~~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 44 NIKLVRQLRENIKKAINLEEMASGLNKRKMIQHAVFKELCNLVDPGVEAFTP-KKGKQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHhCCCCccccc-cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44455666777776665554 3444444444432221111 111 112346799999999999999999998
Q ss_pred HhcCCCCceeeeCCCCCCCC-----------Cc-cccccc---chhhhHH---HHHHcCCCEEEEEeCCCCCCHH--HHH
Q 001788 688 LVSGASPIMIPLGPRRDHEE-----------PE-VRVRGK---TALDKIG---EAVKRNPFSVILLEDIDEADMV--VRG 747 (1013)
Q Consensus 688 ~l~~~~~~~i~id~s~~~~~-----------~~-~g~~G~---~~~~~L~---eal~~~p~~VV~lDEIdka~~~--vq~ 747 (1013)
.+........-+++..|..+ .. |-|..+ +...... +.++...+.+||+|=..+.+.+ ...
T Consensus 123 ~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~ 202 (429)
T TIGR01425 123 YYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKKENFDIIIVDTSGRHKQEDSLFE 202 (429)
T ss_pred HHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHhCCCCEEEEECCCCCcchHHHHH
Confidence 87544445555566554211 10 111111 1111112 2234457899999999888653 334
Q ss_pred HHHHHHHcceEecCCCeEeecCceEEEEecCCCCcch
Q 001788 748 NIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSL 784 (1013)
Q Consensus 748 ~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~ 784 (1013)
.|.++.+. +.-..+++|+.+..|.+..
T Consensus 203 El~~i~~~----------~~p~e~lLVlda~~Gq~a~ 229 (429)
T TIGR01425 203 EMLQVAEA----------IQPDNIIFVMDGSIGQAAE 229 (429)
T ss_pred HHHHHhhh----------cCCcEEEEEeccccChhHH
Confidence 44444321 1223467888777775543
No 300
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.60 E-value=0.0032 Score=62.59 Aligned_cols=89 Identities=19% Similarity=0.258 Sum_probs=55.3
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccccccchhhhHHHHHHcCCCEEEEEeCCCCCCHHHHH
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKRNPFSVILLEDIDEADMVVRG 747 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~~p~~VV~lDEIdka~~~vq~ 747 (1013)
||++|.||||||+++..||+... +..++++.+...- --|.||++. +.-.+||| ..+.+
T Consensus 10 ILvtGTPG~GKstl~~~lae~~~-----~~~i~isd~vkEn-~l~~gyDE~-----------y~c~i~DE-----dkv~D 67 (176)
T KOG3347|consen 10 ILVTGTPGTGKSTLAERLAEKTG-----LEYIEISDLVKEN-NLYEGYDEE-----------YKCHILDE-----DKVLD 67 (176)
T ss_pred EEEeCCCCCCchhHHHHHHHHhC-----CceEehhhHHhhh-cchhccccc-----------ccCccccH-----HHHHH
Confidence 99999999999999999998764 5566777643210 012333211 23346777 56777
Q ss_pred HHHHHHH-cceEecCCCeEe---ecCceEEEEecC
Q 001788 748 NIKRAME-RGRLVDSYGREI---SLGNVIFILTAD 778 (1013)
Q Consensus 748 ~LL~~le-~G~l~d~~g~~v---d~~n~iiI~TSN 778 (1013)
.|-.+|. .|.+.|-+|-.+ -.-+.+||++|.
T Consensus 68 ~Le~~m~~Gg~IVDyHgCd~FperwfdlVvVLr~~ 102 (176)
T KOG3347|consen 68 ELEPLMIEGGNIVDYHGCDFFPERWFDLVVVLRTP 102 (176)
T ss_pred HHHHHHhcCCcEEeecccCccchhheeEEEEEecC
Confidence 7776654 456666655211 122456888884
No 301
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=96.58 E-value=0.0051 Score=71.45 Aligned_cols=124 Identities=18% Similarity=0.248 Sum_probs=76.5
Q ss_pred HHHHHHHhccccccHHHHHHHHHHHHHhhhhcCC--CCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeC
Q 001788 623 KRLLKSLMEKVWWQQEAASAVATTVTQCKLGNGK--RRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLG 700 (1013)
Q Consensus 623 ~~L~~~L~~~ViGQ~~ai~~I~~ai~~~~~g~~~--~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id 700 (1013)
+.+.+.+.-.|+|..+..++|+-.+.- |..+ ..++.-++|+.+|++|.||+.|+.+.+-+-+... .-+.-.
T Consensus 323 e~is~sIAPSIfG~~DiKkAiaClLFg---GsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsP----IaVYTS 395 (729)
T KOG0481|consen 323 ERISKSIAPSIFGHEDIKKAIACLLFG---GSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSP----IAVYTS 395 (729)
T ss_pred HHHhhccCchhcCchhHHHHHHHHhhc---CccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCc----eEEEec
Confidence 445555666789999888887766541 1111 1223346788899999999999999887755432 111111
Q ss_pred CCCCCCCCcccccc-----------cchhhhHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEec
Q 001788 701 PRRDHEEPEVRVRG-----------KTALDKIGEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVD 760 (1013)
Q Consensus 701 ~s~~~~~~~~g~~G-----------~~~~~~L~eal~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d 760 (1013)
.- +.+..|+.. |-++| ++--..++||+|||+|||.++-.-.+-++||...+.-
T Consensus 396 GK---GSSAAGLTASV~RD~~tReFylEGG----AMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQTISI 459 (729)
T KOG0481|consen 396 GK---GSSAAGLTASVIRDPSTREFYLEGG----AMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISI 459 (729)
T ss_pred CC---CcccccceeeEEecCCcceEEEecc----eEEEecCCEEEeehhhccCchhhhHHHHHHHhhhHHH
Confidence 10 011112110 11222 1122345899999999999999999999999876654
No 302
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.57 E-value=0.0053 Score=64.93 Aligned_cols=88 Identities=18% Similarity=0.240 Sum_probs=49.9
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccccccchhhhHHHHHH------------cCCCEEEE
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVK------------RNPFSVIL 734 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~------------~~p~~VV~ 734 (1013)
++++.||+|||||++.+.+.+.+......++-+..+.-.-..-....|.. ...+...+. ..+..||+
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~-a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIE-AQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS--EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcc-hhhHHHHHhcCCcccccccccCCcccEEE
Confidence 37889999999999999999888755444444433210000000000000 000111111 23347999
Q ss_pred EeCCCCCCHHHHHHHHHHHHc
Q 001788 735 LEDIDEADMVVRGNIKRAMER 755 (1013)
Q Consensus 735 lDEIdka~~~vq~~LL~~le~ 755 (1013)
+||+..++......|++.+..
T Consensus 99 VDEasmv~~~~~~~ll~~~~~ 119 (196)
T PF13604_consen 99 VDEASMVDSRQLARLLRLAKK 119 (196)
T ss_dssp ESSGGG-BHHHHHHHHHHS-T
T ss_pred EecccccCHHHHHHHHHHHHh
Confidence 999999999999999988864
No 303
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.52 E-value=0.0058 Score=70.56 Aligned_cols=102 Identities=13% Similarity=0.243 Sum_probs=59.6
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcc---ccc-ccchhhhHHHHHHcCCCEEEEEeCCCCCCH
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEV---RVR-GKTALDKIGEAVKRNPFSVILLEDIDEADM 743 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~---g~~-G~~~~~~L~eal~~~p~~VV~lDEIdka~~ 743 (1013)
+.++|+.|+|||.|.-.....+......-+++. +++..... .+. +.+....+.+.+... ..||+|||++=-|.
T Consensus 65 lYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~-~~lLcfDEF~V~Di 141 (362)
T PF03969_consen 65 LYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--EFMLDVHSRLHQLRGQDDPLPQVADELAKE-SRLLCFDEFQVTDI 141 (362)
T ss_pred EEEECCCCCchhHHHHHHHHhCCcccccccccc--HHHHHHHHHHHHHhCCCccHHHHHHHHHhc-CCEEEEeeeeccch
Confidence 999999999999999998888765333323332 11110000 011 111223344444333 36999999976665
Q ss_pred H---HHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchh
Q 001788 744 V---VRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLK 785 (1013)
Q Consensus 744 ~---vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~ 785 (1013)
. +...|++.+= -.++++|+|||...+.+-
T Consensus 142 aDAmil~rLf~~l~-------------~~gvvlVaTSN~~P~~Ly 173 (362)
T PF03969_consen 142 ADAMILKRLFEALF-------------KRGVVLVATSNRPPEDLY 173 (362)
T ss_pred hHHHHHHHHHHHHH-------------HCCCEEEecCCCChHHHc
Confidence 4 4444444331 134568999999887664
No 304
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.51 E-value=0.0092 Score=66.11 Aligned_cols=88 Identities=18% Similarity=0.243 Sum_probs=58.1
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeC-CCCCCCCCc-----ccccccchhhhHHHHHHcCCCEEEEEeCCCCC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLG-PRRDHEEPE-----VRVRGKTALDKIGEAVKRNPFSVILLEDIDEA 741 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id-~s~~~~~~~-----~g~~G~~~~~~L~eal~~~p~~VV~lDEIdka 741 (1013)
++|.||+|+|||++.+++...+......++.+. ..++..... ....|.+....+..+++..| ++|+++||...
T Consensus 83 ilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~P-D~i~vgEiR~~ 161 (264)
T cd01129 83 ILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDP-DIIMVGEIRDA 161 (264)
T ss_pred EEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCC-CEEEeccCCCH
Confidence 999999999999999999887764334455553 223221100 01123344556667777777 89999999764
Q ss_pred CHHHHHHHHHHHHcceE
Q 001788 742 DMVVRGNIKRAMERGRL 758 (1013)
Q Consensus 742 ~~~vq~~LL~~le~G~l 758 (1013)
+....++++..+|..
T Consensus 162 --e~a~~~~~aa~tGh~ 176 (264)
T cd01129 162 --ETAEIAVQAALTGHL 176 (264)
T ss_pred --HHHHHHHHHHHcCCc
Confidence 455677888887763
No 305
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.51 E-value=0.0047 Score=70.10 Aligned_cols=53 Identities=21% Similarity=0.334 Sum_probs=46.5
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhc
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVS 690 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~ 690 (1013)
..++|-++++..+...+..+..|...++.+ ++|.||+|+|||++++.|.+.+-
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krI-------l~L~GPvg~GKSsl~~~Lk~~le 113 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRI-------LLLLGPVGGGKSSLAELLKRGLE 113 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceE-------EEEECCCCCCHHHHHHHHHHHhh
Confidence 468999999999999999888887765543 99999999999999999998874
No 306
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.0046 Score=66.33 Aligned_cols=126 Identities=15% Similarity=0.206 Sum_probs=87.5
Q ss_pred cCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-c-ccchhhhHHHHHHHHHHHHhhcCCCCceEEEecchhHH
Q 001788 204 GGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-F-TCDKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKWL 279 (1013)
Q Consensus 204 vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~-~~~rge~e~r~~~l~~~~~~~~~~~~~~il~idel~~l 279 (1013)
-|+| |||-.+++-|.. -++.|+.|-.. + .||-|+=..=+.+-+..+++ .++.|+|||||..+
T Consensus 211 YGPPGTGKTlmARAcAaq----------T~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKE----kaP~IIFIDElDAI 276 (424)
T KOG0652|consen 211 YGPPGTGKTLMARACAAQ----------TNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKE----KAPTIIFIDELDAI 276 (424)
T ss_pred eCCCCCcHHHHHHHHHHh----------ccchHHHhcchHHHhhhhcchHHHHHHHHHHhhc----cCCeEEEEechhhh
Confidence 8999 999999998876 56777777766 4 46888877778888889988 79999999999977
Q ss_pred HhcccccCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEecCHHHHHHhhhcCCCCCCCCCC-eeeeccC
Q 001788 280 VEQQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATCETYLRCQVYHPSMENDWDL-QAVPIAA 357 (1013)
Q Consensus 280 ~~~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~IgatT~~~Y~k~~~~~~ale~~~rf-q~v~v~e 357 (1013)
--..-.+. +.|- + +..+. .-|+.|-|.++- +..++.+|+||+.-. ..||||=..-|+ ..|..|-
T Consensus 277 GtKRfDSe---k~GD-R---EVQRT-MLELLNQLDGFs-s~~~vKviAATNRvD-----iLDPALlRSGRLDRKIEfP~ 341 (424)
T KOG0652|consen 277 GTKRFDSE---KAGD-R---EVQRT-MLELLNQLDGFS-SDDRVKVIAATNRVD-----ILDPALLRSGRLDRKIEFPH 341 (424)
T ss_pred cccccccc---cccc-H---HHHHH-HHHHHHhhcCCC-CccceEEEeeccccc-----ccCHHHhhcccccccccCCC
Confidence 44331100 1111 1 12221 227888888888 789999999998643 357777444455 4455555
No 307
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.0033 Score=79.42 Aligned_cols=120 Identities=11% Similarity=0.099 Sum_probs=86.1
Q ss_pred cCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc--cccchhhhHHHHHHHHHHHHhhcCCCCceEEEecchhHH
Q 001788 204 GGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD--FTCDKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKWL 279 (1013)
Q Consensus 204 vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~--~~~~rge~e~r~~~l~~~~~~~~~~~~~~il~idel~~l 279 (1013)
=|.| |||-++++||....+|+ +...++.-+.. +.-+-||-|..+.-|+++++. .-+.|+|+|||.=|
T Consensus 305 ~GppGTGkTl~araLa~~~s~~~-----~kisffmrkgaD~lskwvgEaERqlrllFeeA~k----~qPSIIffdeIdGl 375 (1080)
T KOG0732|consen 305 HGPPGTGKTLMARALAAACSRGN-----RKISFFMRKGADCLSKWVGEAERQLRLLFEEAQK----TQPSIIFFDEIDGL 375 (1080)
T ss_pred cCCCCCchhHHHHhhhhhhcccc-----cccchhhhcCchhhccccCcHHHHHHHHHHHHhc----cCceEEeccccccc
Confidence 7888 99999999998877763 33333333322 233899999999999999998 58999999999988
Q ss_pred HhcccccCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEecCHHHH-HHhhhcCCCC
Q 001788 280 VEQQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATCETY-LRCQVYHPSM 344 (1013)
Q Consensus 280 ~~~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~IgatT~~~Y-~k~~~~~~al 344 (1013)
+....+ ++.+ .-..+|+-+--||.++= +||.+.+||||.+..| ....++...|
T Consensus 376 apvrSs-----kqEq------ih~SIvSTLLaLmdGld-sRgqVvvigATnRpda~dpaLRRPgrf 429 (1080)
T KOG0732|consen 376 APVRSS-----KQEQ------IHASIVSTLLALMDGLD-SRGQVVVIGATNRPDAIDPALRRPGRF 429 (1080)
T ss_pred cccccc-----hHHH------hhhhHHHHHHHhccCCC-CCCceEEEcccCCccccchhhcCCccc
Confidence 776632 1111 22335667777777777 8999999999988553 3344445555
No 308
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.47 E-value=0.036 Score=59.93 Aligned_cols=99 Identities=9% Similarity=0.114 Sum_probs=66.1
Q ss_pred EEEeccCC-CccchHHHHHHHHhcCCC------CceeeeCCCCCCCCCcccccccchhhhHHHHHHcC----CCEEEEEe
Q 001788 668 LLFMGPDR-VGKKKMASALSELVSGAS------PIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKRN----PFSVILLE 736 (1013)
Q Consensus 668 lLf~Gp~G-vGKT~lAr~LA~~l~~~~------~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~~----p~~VV~lD 736 (1013)
.||.|..+ .||..++..+++.++... ..+..+.... .........+.+....+.+.+... ++.|++|+
T Consensus 18 YLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~-~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViII~ 96 (263)
T PRK06581 18 WLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARET-SATSNAKNISIEQIRKLQDFLSKTSAISGYKVAIIY 96 (263)
T ss_pred eeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccc-cccccCCcccHHHHHHHHHHHhhCcccCCcEEEEEe
Confidence 99999998 999999999999887542 1111111100 000001123444455566666544 45799999
Q ss_pred CCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecC
Q 001788 737 DIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778 (1013)
Q Consensus 737 EIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN 778 (1013)
++|+++....|.||+.+|+-. .+++||++|+
T Consensus 97 ~ae~mt~~AANALLKtLEEPP-----------~~t~fILit~ 127 (263)
T PRK06581 97 SAELMNLNAANSCLKILEDAP-----------KNSYIFLITS 127 (263)
T ss_pred chHHhCHHHHHHHHHhhcCCC-----------CCeEEEEEeC
Confidence 999999999999999999733 4567887665
No 309
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.46 E-value=0.036 Score=65.61 Aligned_cols=123 Identities=12% Similarity=0.086 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhcccccc---------HHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhc
Q 001788 620 DSFKRLLKSLMEKVWWQ---------QEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVS 690 (1013)
Q Consensus 620 e~l~~L~~~L~~~ViGQ---------~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~ 690 (1013)
+-.+.+.+.+++++.|+ +..++.+...+.....+........ .+..+++|+|++|+|||+++..||..+.
T Consensus 42 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~~~-~~p~vI~lvG~~GsGKTTtaakLA~~L~ 120 (437)
T PRK00771 42 KLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVKLLGEETEPLVLP-LKPQTIMLVGLQGSGKTTTAAKLARYFK 120 (437)
T ss_pred HHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHHHhCCCccccccC-CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 44455555555554443 3445555555554332221111111 2345699999999999999999998886
Q ss_pred CCCCceeeeCCCCCCCCC------------ccccccc---chhhhHHHHHHc-CCCEEEEEeCCCCCCH
Q 001788 691 GASPIMIPLGPRRDHEEP------------EVRVRGK---TALDKIGEAVKR-NPFSVILLEDIDEADM 743 (1013)
Q Consensus 691 ~~~~~~i~id~s~~~~~~------------~~g~~G~---~~~~~L~eal~~-~p~~VV~lDEIdka~~ 743 (1013)
.......-+++..|..+. .+-|... +....+.+++.. ..+.+|+||...+.+.
T Consensus 121 ~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~~~~DvVIIDTAGr~~~ 189 (437)
T PRK00771 121 KKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFKKADVIIVDTAGRHAL 189 (437)
T ss_pred HcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHhhcCCEEEEECCCcccc
Confidence 444455555655542210 0111111 111223344433 2348999999987764
No 310
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.43 E-value=0.042 Score=64.04 Aligned_cols=108 Identities=12% Similarity=0.200 Sum_probs=63.0
Q ss_pred ceEEEeccCCCccchHHHHHHHHhc------CCCCceeeeCCCCCCCCC------------cccccccchhhhHHHHHHc
Q 001788 666 MWLLFMGPDRVGKKKMASALSELVS------GASPIMIPLGPRRDHEEP------------EVRVRGKTALDKIGEAVKR 727 (1013)
Q Consensus 666 ~~lLf~Gp~GvGKT~lAr~LA~~l~------~~~~~~i~id~s~~~~~~------------~~g~~G~~~~~~L~eal~~ 727 (1013)
..++|+||+|+|||+++..||..+. +....++.+|+ |..++ .|-+..+ ....+..++..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt--~R~aa~eQL~~~a~~lgvpv~~~~-~~~~l~~~L~~ 251 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDN--YRIGAKKQIQTYGDIMGIPVKAIE-SFKDLKEEITQ 251 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccC--ccHHHHHHHHHHhhcCCcceEeeC-cHHHHHHHHHH
Confidence 3699999999999999999987664 22334455554 32110 0111122 12334444332
Q ss_pred -CCCEEEEEeCCCCCCHHHH--HHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchh
Q 001788 728 -NPFSVILLEDIDEADMVVR--GNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLK 785 (1013)
Q Consensus 728 -~p~~VV~lDEIdka~~~vq--~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~ 785 (1013)
..+.+|++|.+.+.+.+.. ..+.++++.... -..+++|+..+.+...+.
T Consensus 252 ~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~---------~~e~~LVlsat~~~~~~~ 303 (388)
T PRK12723 252 SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGR---------DAEFHLAVSSTTKTSDVK 303 (388)
T ss_pred hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCC---------CCeEEEEEcCCCCHHHHH
Confidence 5578999999999986543 344455542110 114667888877655544
No 311
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.43 E-value=0.0079 Score=60.75 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=23.4
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCC
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGA 692 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~ 692 (1013)
-++++|+||+|||+++.-|++.+...
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 39999999999999999999988654
No 312
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.37 E-value=0.013 Score=69.20 Aligned_cols=107 Identities=13% Similarity=0.122 Sum_probs=70.8
Q ss_pred cCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccccccchhhhHHHHHHHHHHHHhhcCCCCceEEEecchhHHHh
Q 001788 204 GGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKDFTCDKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKWLVE 281 (1013)
Q Consensus 204 vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~~~~rge~e~r~~~l~~~~~~~~~~~~~~il~idel~~l~~ 281 (1013)
.|+| |||.+++.++... +..++.++....+ . ..++++++.+......+.+.||||||+|.+..
T Consensus 42 ~GppGtGKTtLA~~ia~~~----------~~~~~~l~a~~~~-~----~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~ 106 (413)
T PRK13342 42 WGPPGTGKTTLARIIAGAT----------DAPFEALSAVTSG-V----KDLREVIEEARQRRSAGRRTILFIDEIHRFNK 106 (413)
T ss_pred ECCCCCCHHHHHHHHHHHh----------CCCEEEEeccccc-H----HHHHHHHHHHHHhhhcCCceEEEEechhhhCH
Confidence 9999 9999999998863 3456666644211 1 12334444443221115789999999998753
Q ss_pred cccccCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEecCHHHHHHhhhcCCCCCCCCCCeeeeccC
Q 001788 282 QQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATCETYLRCQVYHPSMENDWDLQAVPIAA 357 (1013)
Q Consensus 282 ~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~IgatT~~~Y~k~~~~~~ale~~~rfq~v~v~e 357 (1013)
. ..+.|-+.+ ..|.+.+||+||...+. ..+++| ..|++.+.++.
T Consensus 107 ~--------------------------~q~~LL~~l-e~~~iilI~att~n~~~---~l~~aL--~SR~~~~~~~~ 150 (413)
T PRK13342 107 A--------------------------QQDALLPHV-EDGTITLIGATTENPSF---EVNPAL--LSRAQVFELKP 150 (413)
T ss_pred H--------------------------HHHHHHHHh-hcCcEEEEEeCCCChhh---hccHHH--hccceeeEeCC
Confidence 2 223444566 47899999999875543 346888 88888888886
No 313
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.34 E-value=0.049 Score=63.74 Aligned_cols=115 Identities=10% Similarity=0.051 Sum_probs=65.6
Q ss_pred CceEEEeccCCCccchHHHHHHHHh-cCCCCceeeeCCCCCCCCCc---------cc--ccccchhhhHHHHHHcCCCEE
Q 001788 665 DMWLLFMGPDRVGKKKMASALSELV-SGASPIMIPLGPRRDHEEPE---------VR--VRGKTALDKIGEAVKRNPFSV 732 (1013)
Q Consensus 665 ~~~lLf~Gp~GvGKT~lAr~LA~~l-~~~~~~~i~id~s~~~~~~~---------~g--~~G~~~~~~L~eal~~~p~~V 732 (1013)
..+++|.||+|+|||+++..||... ........-+++..|..+.. .+ +........+.+.+....+.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 3468999999999999999999754 33223344445444322110 01 111111234555666667799
Q ss_pred EEEeCCCCCC--HHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchhh
Q 001788 733 ILLEDIDEAD--MVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLKF 786 (1013)
Q Consensus 733 V~lDEIdka~--~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~~ 786 (1013)
||||=....+ ......|..+++.-.-. +-..+++|+.++.+.+.+..
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~-------~~~e~~LVLsAt~~~~~~~~ 351 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEK-------DSVENLLVLSSTSSYHHTLT 351 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCC-------CCCeEEEEEeCCCCHHHHHH
Confidence 9999655544 45555666665421100 12346688888877655543
No 314
>PRK10536 hypothetical protein; Provisional
Probab=96.29 E-value=0.015 Score=63.60 Aligned_cols=25 Identities=8% Similarity=0.146 Sum_probs=21.3
Q ss_pred CEEEEEeCCCCCCHHHHHHHHHHHH
Q 001788 730 FSVILLEDIDEADMVVRGNIKRAME 754 (1013)
Q Consensus 730 ~~VV~lDEIdka~~~vq~~LL~~le 754 (1013)
.++|++||...+++.....++..+.
T Consensus 177 ~~~vIvDEaqn~~~~~~k~~ltR~g 201 (262)
T PRK10536 177 NAVVILDEAQNVTAAQMKMFLTRLG 201 (262)
T ss_pred CCEEEEechhcCCHHHHHHHHhhcC
Confidence 3689999999999998888886664
No 315
>PRK04296 thymidine kinase; Provisional
Probab=96.28 E-value=0.014 Score=61.30 Aligned_cols=87 Identities=14% Similarity=0.100 Sum_probs=49.0
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCCCCceeeeCC--C-CCCCCCccccccc-------chhhhHHHHHH--cCCCEEEE
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGASPIMIPLGP--R-RDHEEPEVRVRGK-------TALDKIGEAVK--RNPFSVIL 734 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~--s-~~~~~~~~g~~G~-------~~~~~L~eal~--~~p~~VV~ 734 (1013)
..+++||+|+|||+++..++..+.+.....+.+.. . .+.........|. .....+...+. .....||+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 47899999999999998888776544444444422 1 1111100001111 11223333332 24568999
Q ss_pred EeCCCCCCHHHHHHHHHHH
Q 001788 735 LEDIDEADMVVRGNIKRAM 753 (1013)
Q Consensus 735 lDEIdka~~~vq~~LL~~l 753 (1013)
|||+.-++.+....|++.+
T Consensus 84 IDEaq~l~~~~v~~l~~~l 102 (190)
T PRK04296 84 IDEAQFLDKEQVVQLAEVL 102 (190)
T ss_pred EEccccCCHHHHHHHHHHH
Confidence 9999998776444455554
No 316
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.25 E-value=0.12 Score=62.98 Aligned_cols=129 Identities=11% Similarity=0.148 Sum_probs=79.0
Q ss_pred HHHHHHHHHH-----hccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcC---
Q 001788 620 DSFKRLLKSL-----MEKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSG--- 691 (1013)
Q Consensus 620 e~l~~L~~~L-----~~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~--- 691 (1013)
..|..+...| .+.+.+.+.-...|-..+.-... . +..+ +-+.+.|-||+|||.+.+.+-+.|..
T Consensus 380 S~l~~ara~Lhls~vp~sLpcRe~E~~~I~~f~~~~i~---~-~~~g----~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~ 451 (767)
T KOG1514|consen 380 SELSKARARLHLSAVPESLPCRENEFSEIEDFLRSFIS---D-QGLG----SCMYISGVPGTGKTATVLEVMKELQTSSA 451 (767)
T ss_pred hHHHHHHHHhHHhhccccccchhHHHHHHHHHHHhhcC---C-CCCc----eeEEEecCCCCCceehHHHHHHHHHHHHh
Confidence 4444444444 35678888888887777653332 2 2222 14999999999999999988887752
Q ss_pred ----CCCceeeeCCCCCCCCCcc-------cccccchh-----hhHHHHHH----cCCCEEEEEeCCCCCCHHHHHHHHH
Q 001788 692 ----ASPIMIPLGPRRDHEEPEV-------RVRGKTAL-----DKIGEAVK----RNPFSVILLEDIDEADMVVRGNIKR 751 (1013)
Q Consensus 692 ----~~~~~i~id~s~~~~~~~~-------g~~G~~~~-----~~L~eal~----~~p~~VV~lDEIdka~~~vq~~LL~ 751 (1013)
....|+.+|.-.+.. +.. .+.|.... ..|...+. ..+..||+|||.|-+-..-|+.|+.
T Consensus 452 ~~e~p~f~yveINgm~l~~-~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn 530 (767)
T KOG1514|consen 452 QKELPKFDYVEINGLRLAS-PREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYN 530 (767)
T ss_pred hcCCCCccEEEEcceeecC-HHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHH
Confidence 246678888654321 000 01122111 11111111 2344799999999998888999999
Q ss_pred HHHcce
Q 001788 752 AMERGR 757 (1013)
Q Consensus 752 ~le~G~ 757 (1013)
+++=-.
T Consensus 531 ~fdWpt 536 (767)
T KOG1514|consen 531 IFDWPT 536 (767)
T ss_pred HhcCCc
Confidence 997433
No 317
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.22 E-value=0.006 Score=65.60 Aligned_cols=75 Identities=12% Similarity=0.178 Sum_probs=43.1
Q ss_pred ceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCC-CCc-ccccc---cchhhhHH---HHHH--cCCCEEEEE
Q 001788 666 MWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHE-EPE-VRVRG---KTALDKIG---EAVK--RNPFSVILL 735 (1013)
Q Consensus 666 ~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~-~~~-~g~~G---~~~~~~L~---eal~--~~p~~VV~l 735 (1013)
.++||+|+||+|||++|+.++. ...++..|.+...- +.+ ...+. ....+.+. ..+. .+++.+|+|
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~~-----~~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVI 87 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLPG-----KTLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVI 87 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcCC-----CCEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEE
Confidence 5699999999999999998852 23456666643211 100 00000 00011222 2223 356899999
Q ss_pred eCCCCCCHHH
Q 001788 736 EDIDEADMVV 745 (1013)
Q Consensus 736 DEIdka~~~v 745 (1013)
|+|+.+...+
T Consensus 88 DsI~~l~~~~ 97 (220)
T TIGR01618 88 DNISALQNLW 97 (220)
T ss_pred ecHHHHHHHH
Confidence 9999875433
No 318
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.21 E-value=0.021 Score=65.40 Aligned_cols=85 Identities=16% Similarity=0.230 Sum_probs=54.8
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeee-CCCCCCCCCcc------------cccccchhhhHHHHHHcCCCEEEE
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPL-GPRRDHEEPEV------------RVRGKTALDKIGEAVKRNPFSVIL 734 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~i-d~s~~~~~~~~------------g~~G~~~~~~L~eal~~~p~~VV~ 734 (1013)
+++.|++|+|||++.++|...+.... .++.+ |..++.-...+ +-...+....+..+++.+| .+|+
T Consensus 163 ili~G~tgSGKTTll~aL~~~ip~~~-ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~P-D~Ii 240 (332)
T PRK13900 163 IIISGGTSTGKTTFTNAALREIPAIE-RLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRP-DRII 240 (332)
T ss_pred EEEECCCCCCHHHHHHHHHhhCCCCC-eEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCC-CeEE
Confidence 99999999999999999999886543 33433 22222210001 0111223345666777777 7888
Q ss_pred EeCCCCCCHHHHHHHHHHHHcce
Q 001788 735 LEDIDEADMVVRGNIKRAMERGR 757 (1013)
Q Consensus 735 lDEIdka~~~vq~~LL~~le~G~ 757 (1013)
+.|+-- .+.. .+++++..|.
T Consensus 241 vGEiR~--~ea~-~~l~a~~tGh 260 (332)
T PRK13900 241 VGELRG--AEAF-SFLRAINTGH 260 (332)
T ss_pred EEecCC--HHHH-HHHHHHHcCC
Confidence 999985 4555 4688998775
No 319
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.21 E-value=0.016 Score=61.73 Aligned_cols=85 Identities=20% Similarity=0.312 Sum_probs=55.9
Q ss_pred EEEeccCCCccchHHHHHHHHhcCC-----CCceeeeCCCCCCCCCcccccccch---------------hhhHHHHHHc
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGA-----SPIMIPLGPRRDHEEPEVRVRGKTA---------------LDKIGEAVKR 727 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~-----~~~~i~id~s~~~~~~~~g~~G~~~---------------~~~L~eal~~ 727 (1013)
.|+.||||||||++.|-||+.+... .....-+|-+..-.+ +..|... ..-+..+++.
T Consensus 140 tLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag---~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrs 216 (308)
T COG3854 140 TLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAG---CLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRS 216 (308)
T ss_pred eEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhc---cccCCchhhhhhhhhhcccchHHHHHHHHHHh
Confidence 7999999999999999999988644 223344554321111 1222221 1235677777
Q ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHHcce
Q 001788 728 NPFSVILLEDIDEADMVVRGNIKRAMERGR 757 (1013)
Q Consensus 728 ~p~~VV~lDEIdka~~~vq~~LL~~le~G~ 757 (1013)
....|+++|||..... ...++.+++.|.
T Consensus 217 m~PEViIvDEIGt~~d--~~A~~ta~~~GV 244 (308)
T COG3854 217 MSPEVIIVDEIGTEED--ALAILTALHAGV 244 (308)
T ss_pred cCCcEEEEeccccHHH--HHHHHHHHhcCc
Confidence 6668999999998754 356788887653
No 320
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.21 E-value=0.0033 Score=60.42 Aligned_cols=31 Identities=26% Similarity=0.438 Sum_probs=25.1
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCCCCceeeeC
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGASPIMIPLG 700 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id 700 (1013)
++++.|+||+|||++|+.||+.+. .+++..|
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~---~~~i~~d 31 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG---FPVISMD 31 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT---CEEEEEH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC---CeEEEec
Confidence 389999999999999999999874 4444444
No 321
>PHA02774 E1; Provisional
Probab=96.15 E-value=0.014 Score=70.10 Aligned_cols=95 Identities=15% Similarity=0.263 Sum_probs=54.7
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccccccchhhhHHHHHHcCCCEEEEEeCCCCCC-HHHH
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKRNPFSVILLEDIDEAD-MVVR 746 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~~p~~VV~lDEIdka~-~~vq 746 (1013)
++|+||||+|||.+|.+|.+.+.|.-..|+... +. |. .+.|.+ ..|++|||+-..- .-+.
T Consensus 437 iv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~-s~--------Fw----Lqpl~d------~ki~vlDD~t~~~w~y~d 497 (613)
T PHA02774 437 LVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSK-SH--------FW----LQPLAD------AKIALLDDATHPCWDYID 497 (613)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEEEECc-cc--------cc----cchhcc------CCEEEEecCcchHHHHHH
Confidence 999999999999999999999975433344321 11 11 122221 2699999993332 2334
Q ss_pred HHHHHHHHcceEe-cCC-CeEeecCceEEEEecCCCC
Q 001788 747 GNIKRAMERGRLV-DSY-GREISLGNVIFILTADWLP 781 (1013)
Q Consensus 747 ~~LL~~le~G~l~-d~~-g~~vd~~n~iiI~TSN~g~ 781 (1013)
..|..+|+...+. |.+ ...+.....=+|+|||+..
T Consensus 498 ~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~ 534 (613)
T PHA02774 498 TYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDV 534 (613)
T ss_pred HHHHHHcCCCcceeeecccCcccccCCCEEEecCCCc
Confidence 4566666433222 111 1123333334899999743
No 322
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.13 E-value=0.0086 Score=66.50 Aligned_cols=94 Identities=12% Similarity=0.164 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHH--hcCCCCceeeeCCCCCCCC-------
Q 001788 637 QEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSEL--VSGASPIMIPLGPRRDHEE------- 707 (1013)
Q Consensus 637 ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~--l~~~~~~~i~id~s~~~~~------- 707 (1013)
+.-++.|...+.... ....++.++|++|+|||++|+.+++. ........+.++.+.....
T Consensus 2 e~~~~~l~~~L~~~~-----------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i 70 (287)
T PF00931_consen 2 EKEIEKLKDWLLDNS-----------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQI 70 (287)
T ss_dssp HHHHHHHHHHHHTTT-----------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHH
T ss_pred HHHHHHHHHHhhCCC-----------CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccc
Confidence 445666666665322 11234999999999999999999977 4333333344454432110
Q ss_pred -----Cc-ccc-cccc---hhhhHHHHHHcCCCEEEEEeCCCCCC
Q 001788 708 -----PE-VRV-RGKT---ALDKIGEAVKRNPFSVILLEDIDEAD 742 (1013)
Q Consensus 708 -----~~-~g~-~G~~---~~~~L~eal~~~p~~VV~lDEIdka~ 742 (1013)
.. ... ...+ ....+.+.++.+ ..+|+||+++...
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~LlVlDdv~~~~ 114 (287)
T PF00931_consen 71 LRQLGEPDSSISDPKDIEELQDQLRELLKDK-RCLLVLDDVWDEE 114 (287)
T ss_dssp HHHHTCC-STSSCCSSHHHHHHHHHHHHCCT-SEEEEEEEE-SHH
T ss_pred cccccccccccccccccccccccchhhhccc-cceeeeeeecccc
Confidence 00 000 0111 123455555555 6899999998765
No 323
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.12 E-value=0.023 Score=59.45 Aligned_cols=85 Identities=19% Similarity=0.257 Sum_probs=52.0
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeC-CCCCCCCCc--c----------cccccchhhhHHHHHHcCCCEEEE
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLG-PRRDHEEPE--V----------RVRGKTALDKIGEAVKRNPFSVIL 734 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id-~s~~~~~~~--~----------g~~G~~~~~~L~eal~~~p~~VV~ 734 (1013)
++|.||+|+|||++.++|...+.... ..+.+. ..++..... . ++...+....+..+++.+| .+|+
T Consensus 28 i~I~G~tGSGKTTll~aL~~~i~~~~-~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~p-d~i~ 105 (186)
T cd01130 28 ILISGGTGSGKTTLLNALLAFIPPDE-RIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRP-DRII 105 (186)
T ss_pred EEEECCCCCCHHHHHHHHHhhcCCCC-CEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCC-CEEE
Confidence 99999999999999999999876432 333332 222211000 0 0111222334445666676 8899
Q ss_pred EeCCCCCCHHHHHHHHHHHHcce
Q 001788 735 LEDIDEADMVVRGNIKRAMERGR 757 (1013)
Q Consensus 735 lDEIdka~~~vq~~LL~~le~G~ 757 (1013)
+.||-. ++... +++++..|.
T Consensus 106 igEir~--~ea~~-~~~a~~tGh 125 (186)
T cd01130 106 VGEVRG--GEALD-LLQAMNTGH 125 (186)
T ss_pred EEccCc--HHHHH-HHHHHhcCC
Confidence 999975 44544 677887775
No 324
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=96.11 E-value=0.036 Score=65.58 Aligned_cols=147 Identities=18% Similarity=0.213 Sum_probs=88.0
Q ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHhhhhcCC--CCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeee
Q 001788 622 FKRLLKSLMEKVWWQQEAASAVATTVTQCKLGNGK--RRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPL 699 (1013)
Q Consensus 622 l~~L~~~L~~~ViGQ~~ai~~I~~ai~~~~~g~~~--~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~i 699 (1013)
|..|.+.|--.|.|++...++|.-.+. -|..+ +++..-++|+.+|+.|.|.|.|+.|.|.+-+.-.. . |.-
T Consensus 292 FdlLa~SLAPSI~GH~~vKkAillLLl---GGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntApl---A-I~T 364 (818)
T KOG0479|consen 292 FDLLARSLAPSIYGHDYVKKAILLLLL---GGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPL---A-IAT 364 (818)
T ss_pred HHHHhhccCcccccHHHHHHHHHHHHh---ccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccc---c-ccc
Confidence 455667777789999988777665553 12222 23333467899999999999999999887654321 0 110
Q ss_pred CCCCCCCCCcccccc-----cchhhhHH--HHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCC-Ce--EeecC
Q 001788 700 GPRRDHEEPEVRVRG-----KTALDKIG--EAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSY-GR--EISLG 769 (1013)
Q Consensus 700 d~s~~~~~~~~g~~G-----~~~~~~L~--eal~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~-g~--~vd~~ 769 (1013)
... +.+-.|+.. .+-+.+=. +++--...+||+|||+|||..--...+-++||.|+++-.+ |- .++.+
T Consensus 365 TGR---GSSGVGLTAAVTtD~eTGERRLEAGAMVLADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHasLNAR 441 (818)
T KOG0479|consen 365 TGR---GSSGVGLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLNAR 441 (818)
T ss_pred cCC---CCCCccceeEEeeccccchhhhhcCceEEccCceEEehhcccccchhHHHHHHHHhcceEEeEeccchhhhccc
Confidence 000 000011100 00111111 1222234579999999999988888999999999999754 32 22222
Q ss_pred ceEEEEecCC
Q 001788 770 NVIFILTADW 779 (1013)
Q Consensus 770 n~iiI~TSN~ 779 (1013)
|-+|++.|-
T Consensus 442 -CSVlAAANP 450 (818)
T KOG0479|consen 442 -CSVLAAANP 450 (818)
T ss_pred -eeeeeecCc
Confidence 346777773
No 325
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.11 E-value=0.086 Score=62.40 Aligned_cols=155 Identities=17% Similarity=0.128 Sum_probs=80.9
Q ss_pred CHHHHHHHHHHHhccccccH-HHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhc--CCCC
Q 001788 618 DPDSFKRLLKSLMEKVWWQQ-EAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVS--GASP 694 (1013)
Q Consensus 618 d~e~l~~L~~~L~~~ViGQ~-~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~--~~~~ 694 (1013)
+.+-...|.+.+.....+.+ .+...+...|........... + .+...++|.||+|+|||+++..||..+. ....
T Consensus 176 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~-~--~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~ 252 (424)
T PRK05703 176 SPEIAEKLLKLLLEHMPPRERTAWRYLLELLANMIPVRVEDI-L--KQGGVVALVGPTGVGKTTTLAKLAARYALLYGKK 252 (424)
T ss_pred CHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCcccccc-c--cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 33445555556655543322 244445555443221111111 1 1123599999999999999999887654 2223
Q ss_pred ceeeeCCCCCCCCC------------cccccccchhhhHHHHHHc-CCCEEEEEeCCCCCC--HHHHHHHHHHHHcceEe
Q 001788 695 IMIPLGPRRDHEEP------------EVRVRGKTALDKIGEAVKR-NPFSVILLEDIDEAD--MVVRGNIKRAMERGRLV 759 (1013)
Q Consensus 695 ~~i~id~s~~~~~~------------~~g~~G~~~~~~L~eal~~-~p~~VV~lDEIdka~--~~vq~~LL~~le~G~l~ 759 (1013)
.+..+++..|..+. .+-+..+. ...+...+.. ..+.+||||-....+ ......|.++++.
T Consensus 253 ~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~-~~~l~~~l~~~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~---- 327 (424)
T PRK05703 253 KVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYD-PKELAKALEQLRDCDVILIDTAGRSQRDKRLIEELKALIEF---- 327 (424)
T ss_pred eEEEEECCccHHHHHHHHHHHHHHhCCceEccCC-HHhHHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHHHhc----
Confidence 44444554432110 01111121 2345555543 357899999876654 4455667777762
Q ss_pred cCCCeEeecCceEEEEecCCCCcchh
Q 001788 760 DSYGREISLGNVIFILTADWLPDSLK 785 (1013)
Q Consensus 760 d~~g~~vd~~n~iiI~TSN~g~~~~~ 785 (1013)
.+. --..++|++++.+...+.
T Consensus 328 --~~~---~~~~~LVl~a~~~~~~l~ 348 (424)
T PRK05703 328 --SGE---PIDVYLVLSATTKYEDLK 348 (424)
T ss_pred --cCC---CCeEEEEEECCCCHHHHH
Confidence 001 124557888887655443
No 326
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.01 E-value=0.041 Score=61.58 Aligned_cols=70 Identities=17% Similarity=0.165 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhc
Q 001788 619 PDSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVS 690 (1013)
Q Consensus 619 ~e~l~~L~~~L~~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~ 690 (1013)
.+-...|.+.+.+. ...+.+...+...|.+.........+.. ....+++|+||+|+|||+++..||..+.
T Consensus 150 ~~la~~L~~~l~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~vi~~vGptGvGKTTt~~kLa~~~~ 219 (282)
T TIGR03499 150 PELARELLEKLPER-ADAEDAWRWLREALEKMLPVKPEEDEIL-EQGGVIALVGPTGVGKTTTLAKLAARFV 219 (282)
T ss_pred HHHHHHHHHHhhcc-CCHHHHHHHHHHHHHHHhccCCcccccc-CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34445555555543 2334455666666654432111111111 1224689999999999999999998774
No 327
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.00 E-value=0.02 Score=70.13 Aligned_cols=88 Identities=17% Similarity=0.223 Sum_probs=60.0
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeC-CCCCCCCCc-----ccccccchhhhHHHHHHcCCCEEEEEeCCCCC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLG-PRRDHEEPE-----VRVRGKTALDKIGEAVKRNPFSVILLEDIDEA 741 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id-~s~~~~~~~-----~g~~G~~~~~~L~eal~~~p~~VV~lDEIdka 741 (1013)
++|+||+|+|||++..++.+.+......++.+. .-+|..... ..-.|.++...+..+++..| .||++.||-
T Consensus 319 ilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~~~~~~q~~v~~~~g~~~~~~l~~~LR~dP-DvI~vGEiR-- 395 (564)
T TIGR02538 319 VLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLPGINQVNVNPKIGLTFAAALRSFLRQDP-DIIMVGEIR-- 395 (564)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceecCCCceEEEeccccCCCHHHHHHHHhccCC-CEEEeCCCC--
Confidence 999999999999999888777754434444332 223321100 01224455566777788888 999999998
Q ss_pred CHHHHHHHHHHHHcceE
Q 001788 742 DMVVRGNIKRAMERGRL 758 (1013)
Q Consensus 742 ~~~vq~~LL~~le~G~l 758 (1013)
+++.....+++..+|.+
T Consensus 396 d~eta~~a~~aa~tGHl 412 (564)
T TIGR02538 396 DLETAEIAIKAAQTGHL 412 (564)
T ss_pred CHHHHHHHHHHHHcCCc
Confidence 56777888888888874
No 328
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.98 E-value=0.063 Score=59.78 Aligned_cols=85 Identities=9% Similarity=0.095 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhccccc-----cHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCC
Q 001788 620 DSFKRLLKSLMEKVWW-----QQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASP 694 (1013)
Q Consensus 620 e~l~~L~~~L~~~ViG-----Q~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~ 694 (1013)
+-.+.+.+.+.+++.| .......+.+.+...............++..+++|+||+|+|||+++..||..+.....
T Consensus 22 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~ 101 (272)
T TIGR00064 22 EVVEKIIEALKKELKGKKVKDAELLKEILKEYLKEILKETDLELIVEENKPNVILFVGVNGVGKTTTIAKLANKLKKQGK 101 (272)
T ss_pred HHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHcccchhhcccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCC
Confidence 3444455555444332 34455555565554433221100011123356888999999999999999988755444
Q ss_pred ceeeeCCCCC
Q 001788 695 IMIPLGPRRD 704 (1013)
Q Consensus 695 ~~i~id~s~~ 704 (1013)
...-+++..|
T Consensus 102 ~V~li~~D~~ 111 (272)
T TIGR00064 102 SVLLAAGDTF 111 (272)
T ss_pred EEEEEeCCCC
Confidence 5545555543
No 329
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=95.97 E-value=0.014 Score=61.84 Aligned_cols=97 Identities=22% Similarity=0.247 Sum_probs=64.7
Q ss_pred CCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccccccchhhhHHHHHHcCCCEEEEEeCCCCC
Q 001788 662 SKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKRNPFSVILLEDIDEA 741 (1013)
Q Consensus 662 sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~~p~~VV~lDEIdka 741 (1013)
.|.+++++|.|+-|+|||++.+.|....|... +.. .... .....+..+ -+|.|||++.+
T Consensus 49 ~k~d~~lvl~G~QG~GKStf~~~L~~~~~~d~-------~~~--------~~~k----d~~~~l~~~--~iveldEl~~~ 107 (198)
T PF05272_consen 49 CKNDTVLVLVGKQGIGKSTFFRKLGPEYFSDS-------IND--------FDDK----DFLEQLQGK--WIVELDELDGL 107 (198)
T ss_pred CcCceeeeEecCCcccHHHHHHHHhHHhccCc-------ccc--------CCCc----HHHHHHHHh--HheeHHHHhhc
Confidence 36788899999999999999999976644221 000 0011 122223222 58999999999
Q ss_pred CHHHHHHHHHHHHcceEe--cCCCe--EeecCceEEEEecCC
Q 001788 742 DMVVRGNIKRAMERGRLV--DSYGR--EISLGNVIFILTADW 779 (1013)
Q Consensus 742 ~~~vq~~LL~~le~G~l~--d~~g~--~vd~~n~iiI~TSN~ 779 (1013)
...-++.|..+|.....+ ...|+ .---+.++||.|||-
T Consensus 108 ~k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~ 149 (198)
T PF05272_consen 108 SKKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTND 149 (198)
T ss_pred chhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCC
Confidence 988888888888654433 33343 233567889999995
No 330
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=95.96 E-value=0.011 Score=66.37 Aligned_cols=87 Identities=13% Similarity=0.076 Sum_probs=55.5
Q ss_pred cCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccccc---cchhhhHHHHHHHHHHHHhhcCCCCceEEEecchhH
Q 001788 204 GGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKDFT---CDKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKW 278 (1013)
Q Consensus 204 vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~~---~~rge~e~r~~~l~~~~~~~~~~~~~~il~idel~~ 278 (1013)
-|.| |||.+++-++.- ..- ...++++++.--+ .-|+-||.-=+ .. +. . +...||||||||.
T Consensus 168 WGppG~GKTtlArlia~t---sk~----~SyrfvelSAt~a~t~dvR~ife~aq~-~~----~l-~-krkTilFiDEiHR 233 (554)
T KOG2028|consen 168 WGPPGTGKTTLARLIAST---SKK----HSYRFVELSATNAKTNDVRDIFEQAQN-EK----SL-T-KRKTILFIDEIHR 233 (554)
T ss_pred ecCCCCchHHHHHHHHhh---cCC----CceEEEEEeccccchHHHHHHHHHHHH-HH----hh-h-cceeEEEeHHhhh
Confidence 8999 999877666533 111 2377888875422 13444442111 11 11 1 5789999999998
Q ss_pred HHhcccccCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEecCH
Q 001788 279 LVEQQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATC 331 (1013)
Q Consensus 279 l~~~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~IgatT~ 331 (1013)
+=.... .++=|+. -.|.|.+|||||-
T Consensus 234 FNksQQ--------------------------D~fLP~V-E~G~I~lIGATTE 259 (554)
T KOG2028|consen 234 FNKSQQ--------------------------DTFLPHV-ENGDITLIGATTE 259 (554)
T ss_pred hhhhhh--------------------------hccccee-ccCceEEEecccC
Confidence 865431 2456778 4999999999985
No 331
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.90 E-value=0.032 Score=65.92 Aligned_cols=90 Identities=20% Similarity=0.237 Sum_probs=61.1
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCCCCceeeeC-CCCCCCCC-----cccccccchhhhHHHHHHcCCCEEEEEeCCCC
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGASPIMIPLG-PRRDHEEP-----EVRVRGKTALDKIGEAVKRNPFSVILLEDIDE 740 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id-~s~~~~~~-----~~g~~G~~~~~~L~eal~~~p~~VV~lDEIdk 740 (1013)
-+||.||+|+|||+...++...++.....++.+. .-+|...- .-.-.|-++...|-..+++-| +||++.||..
T Consensus 260 liLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDP-DvImVGEIRD 338 (500)
T COG2804 260 LILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLPGINQVQVNPKIGLTFARALRAILRQDP-DVIMVGEIRD 338 (500)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeecCCcceeecccccCCCHHHHHHHHhccCC-CeEEEeccCC
Confidence 3999999999999999998888876655555443 22221100 000234444555666666777 9999999975
Q ss_pred CCHHHHHHHHHHHHcceEe
Q 001788 741 ADMVVRGNIKRAMERGRLV 759 (1013)
Q Consensus 741 a~~~vq~~LL~~le~G~l~ 759 (1013)
. +......++-.+|.+.
T Consensus 339 ~--ETAeiavqAalTGHLV 355 (500)
T COG2804 339 L--ETAEIAVQAALTGHLV 355 (500)
T ss_pred H--HHHHHHHHHHhcCCeE
Confidence 4 6677788888888854
No 332
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.90 E-value=0.017 Score=63.88 Aligned_cols=87 Identities=22% Similarity=0.384 Sum_probs=55.0
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeC-CCCCCCC-Ccc-c--c--cccchhhhHHHHHHcCCCEEEEEeCCCC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLG-PRRDHEE-PEV-R--V--RGKTALDKIGEAVKRNPFSVILLEDIDE 740 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id-~s~~~~~-~~~-g--~--~G~~~~~~L~eal~~~p~~VV~lDEIdk 740 (1013)
++|.||+|+|||++.++|...+......++.+. ..++.-. ... . . .+.+....+..+++.+| ++|++.||-.
T Consensus 130 ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~p-D~iiigEiR~ 208 (270)
T PF00437_consen 130 ILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSALRQDP-DVIIIGEIRD 208 (270)
T ss_dssp EEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHTTS---SEEEESCE-S
T ss_pred EEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHHhcCCC-CcccccccCC
Confidence 999999999999999999998876634444433 3333211 100 0 1 12233455666777777 8999999986
Q ss_pred CCHHHHHHHHHHHHcceE
Q 001788 741 ADMVVRGNIKRAMERGRL 758 (1013)
Q Consensus 741 a~~~vq~~LL~~le~G~l 758 (1013)
. +.... ++++..|..
T Consensus 209 ~--e~~~~-~~a~~tGh~ 223 (270)
T PF00437_consen 209 P--EAAEA-IQAANTGHL 223 (270)
T ss_dssp C--HHHHH-HHHHHTT-E
T ss_pred H--hHHHH-HHhhccCCc
Confidence 5 56666 889988874
No 333
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.87 E-value=0.026 Score=65.45 Aligned_cols=88 Identities=17% Similarity=0.220 Sum_probs=56.5
Q ss_pred EEEeccCCCccchHHHHHHHHhcCC--CCceeeeC-CCCCCCCCc-------cccccc---chhhhHHHHHHcCCCEEEE
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGA--SPIMIPLG-PRRDHEEPE-------VRVRGK---TALDKIGEAVKRNPFSVIL 734 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~--~~~~i~id-~s~~~~~~~-------~g~~G~---~~~~~L~eal~~~p~~VV~ 734 (1013)
+++.||+|+|||++.++|.+.+... ....+.+. ..+|....+ ...+|. +....+..+++..| ++|+
T Consensus 152 ilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~P-D~I~ 230 (372)
T TIGR02525 152 GLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAP-KIIG 230 (372)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCC-CEEe
Confidence 8999999999999999999887421 22344443 223221100 001122 12234556777777 8999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcceE
Q 001788 735 LEDIDEADMVVRGNIKRAMERGRL 758 (1013)
Q Consensus 735 lDEIdka~~~vq~~LL~~le~G~l 758 (1013)
+.|+-. .+....++++..+|..
T Consensus 231 vGEiRd--~et~~~al~aa~TGH~ 252 (372)
T TIGR02525 231 VGEIRD--LETFQAAVLAGQSGHF 252 (372)
T ss_pred eCCCCC--HHHHHHHHHHHhcCCc
Confidence 999984 4667778899988864
No 334
>PRK10867 signal recognition particle protein; Provisional
Probab=95.85 E-value=0.074 Score=62.87 Aligned_cols=90 Identities=13% Similarity=0.210 Sum_probs=51.6
Q ss_pred CCceEEEeccCCCccchHHHHHHHHhcCC-CCceeeeCCCCCCCCC------------ccccc---ccchhhhHH---HH
Q 001788 664 GDMWLLFMGPDRVGKKKMASALSELVSGA-SPIMIPLGPRRDHEEP------------EVRVR---GKTALDKIG---EA 724 (1013)
Q Consensus 664 ~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~-~~~~i~id~s~~~~~~------------~~g~~---G~~~~~~L~---ea 724 (1013)
+..+++|+|++|+|||+++.-||..+... .....-+++..|.... .+-|. +.+...... +.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~ 178 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEE 178 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHH
Confidence 34679999999999999999998877544 3444445554442110 00011 111111122 22
Q ss_pred HHcCCCEEEEEeCCCCCC--HHHHHHHHHHH
Q 001788 725 VKRNPFSVILLEDIDEAD--MVVRGNIKRAM 753 (1013)
Q Consensus 725 l~~~p~~VV~lDEIdka~--~~vq~~LL~~l 753 (1013)
.+...+.+|++|=..+++ ......|..+.
T Consensus 179 a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~ 209 (433)
T PRK10867 179 AKENGYDVVIVDTAGRLHIDEELMDELKAIK 209 (433)
T ss_pred HHhcCCCEEEEeCCCCcccCHHHHHHHHHHH
Confidence 344567899999998875 34444444333
No 335
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.81 E-value=0.088 Score=58.86 Aligned_cols=127 Identities=12% Similarity=0.160 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCC-----
Q 001788 618 DPDSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGA----- 692 (1013)
Q Consensus 618 d~e~l~~L~~~L~~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~----- 692 (1013)
+.|++..+ ...+.||-..|...+.. +..... ..++...++ +|++|++|.|||++++...+.....
T Consensus 24 ~~eRI~~i---~~~rWIgY~~A~~~L~~-L~~Ll~-~P~~~Rmp~-----lLivG~snnGKT~Ii~rF~~~hp~~~d~~~ 93 (302)
T PF05621_consen 24 DEERIAYI---RADRWIGYPRAKEALDR-LEELLE-YPKRHRMPN-----LLIVGDSNNGKTMIIERFRRLHPPQSDEDA 93 (302)
T ss_pred HHHHHHHH---hcCCeecCHHHHHHHHH-HHHHHh-CCcccCCCc-----eEEecCCCCcHHHHHHHHHHHCCCCCCCCC
Confidence 44554444 36889999988766544 222211 112111234 9999999999999999988755322
Q ss_pred -CCceeeeCCCCCCCCCc----------ccccccch----hhhHHHHHHcCCCEEEEEeCCCCC---CHHHHHHHHHHHH
Q 001788 693 -SPIMIPLGPRRDHEEPE----------VRVRGKTA----LDKIGEAVKRNPFSVILLEDIDEA---DMVVRGNIKRAME 754 (1013)
Q Consensus 693 -~~~~i~id~s~~~~~~~----------~g~~G~~~----~~~L~eal~~~p~~VV~lDEIdka---~~~vq~~LL~~le 754 (1013)
..|++.+.|....+... .-|..... .......++...-.+++||||+.+ ...-|..++.++.
T Consensus 94 ~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK 173 (302)
T PF05621_consen 94 ERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALK 173 (302)
T ss_pred ccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHH
Confidence 23566666643221100 00111111 122335566666689999999875 3444555555553
No 336
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.78 E-value=0.18 Score=57.45 Aligned_cols=114 Identities=18% Similarity=0.219 Sum_probs=62.8
Q ss_pred CceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCC-----------ccccc----ccchhhhHHHHH---H
Q 001788 665 DMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEP-----------EVRVR----GKTALDKIGEAV---K 726 (1013)
Q Consensus 665 ~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~-----------~~g~~----G~~~~~~L~eal---~ 726 (1013)
..+++|+||+|+|||+++..||..+......+.-+++..|..+. ...++ +.+......+++ .
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~ 193 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK 193 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999999886554444445554432110 00111 111111112222 3
Q ss_pred cCCCEEEEEeCCCCCCHH--HHH---HHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchh
Q 001788 727 RNPFSVILLEDIDEADMV--VRG---NIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLK 785 (1013)
Q Consensus 727 ~~p~~VV~lDEIdka~~~--vq~---~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~ 785 (1013)
...+.+|++|=...++.+ ... .+.++++. .+.. .-..+++|+.++.+.+.+.
T Consensus 194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~-~~~~------~p~~~~LVl~a~~g~~~~~ 250 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKK-ADPD------APHEVLLVLDATTGQNALS 250 (318)
T ss_pred hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhh-hcCC------CCceEEEEEECCCChHHHH
Confidence 466799999999888732 223 33333322 1111 1123567777777665544
No 337
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=95.77 E-value=0.32 Score=57.13 Aligned_cols=61 Identities=10% Similarity=0.074 Sum_probs=46.1
Q ss_pred ccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCC
Q 001788 633 VWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRR 703 (1013)
Q Consensus 633 ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~ 703 (1013)
-+|.+..++.|...+.....|.. ..-++.|.-|+|||.+.+.+.+.-.........++++.
T Consensus 27 ~VGr~~e~~~l~~~l~~v~~G~s----------~~kfi~G~YGsGKTf~l~~i~~~A~~~~fvvs~v~ls~ 87 (416)
T PF10923_consen 27 AVGREREIEALDRDLDRVADGGS----------SFKFIRGEYGSGKTFFLRLIRERALEKGFVVSEVDLSP 87 (416)
T ss_pred eechHHHHHHHHHHHHHHhCCCC----------eEEEEEeCCCCcHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 48999889888888876655422 23789999999999999999887776655555665543
No 338
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.77 E-value=0.07 Score=61.85 Aligned_cols=87 Identities=11% Similarity=0.107 Sum_probs=54.9
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCC------------cccccccchhhhHHHHHHc----CCC
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEP------------EVRVRGKTALDKIGEAVKR----NPF 730 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~------------~~g~~G~~~~~~L~eal~~----~p~ 730 (1013)
.++|.||+|+|||+++..||..+......+.-+++..|..++ .+-+... ....+.+++.. ..+
T Consensus 243 vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~-d~~~L~~aL~~lk~~~~~ 321 (436)
T PRK11889 243 TIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR-DEAAMTRALTYFKEEARV 321 (436)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecC-CHHHHHHHHHHHHhccCC
Confidence 599999999999999999998887554445455555442111 0111111 22344455532 246
Q ss_pred EEEEEeCCCCCCH--HHHHHHHHHHH
Q 001788 731 SVILLEDIDEADM--VVRGNIKRAME 754 (1013)
Q Consensus 731 ~VV~lDEIdka~~--~vq~~LL~~le 754 (1013)
.+||+|-..+.+. .....|.++++
T Consensus 322 DvVLIDTaGRs~kd~~lm~EL~~~lk 347 (436)
T PRK11889 322 DYILIDTAGKNYRASETVEEMIETMG 347 (436)
T ss_pred CEEEEeCccccCcCHHHHHHHHHHHh
Confidence 8999999998874 34555666664
No 339
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.77 E-value=0.14 Score=59.45 Aligned_cols=111 Identities=15% Similarity=0.135 Sum_probs=57.7
Q ss_pred ceEEEeccCCCccchHHHHHHHHhcCC--CCceeeeCCCCCCCCCcc---------c--ccccchhhhHHHHHHc-CCCE
Q 001788 666 MWLLFMGPDRVGKKKMASALSELVSGA--SPIMIPLGPRRDHEEPEV---------R--VRGKTALDKIGEAVKR-NPFS 731 (1013)
Q Consensus 666 ~~lLf~Gp~GvGKT~lAr~LA~~l~~~--~~~~i~id~s~~~~~~~~---------g--~~G~~~~~~L~eal~~-~p~~ 731 (1013)
.+++|+||+|+|||+++..||..+... ...+..+....|..+... | +......+.+...+.+ ..+.
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D 217 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH 217 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence 469999999999999999999764211 123333344333211000 0 1111112233344432 3458
Q ss_pred EEEEeCCCCCCHH-HHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchh
Q 001788 732 VILLEDIDEADMV-VRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLK 785 (1013)
Q Consensus 732 VV~lDEIdka~~~-vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~ 785 (1013)
+||||.....+.+ .+...+..+..- + .--..++|+..+.+.+.+.
T Consensus 218 lVLIDTaG~~~~d~~l~e~La~L~~~---~------~~~~~lLVLsAts~~~~l~ 263 (374)
T PRK14722 218 MVLIDTIGMSQRDRTVSDQIAMLHGA---D------TPVQRLLLLNATSHGDTLN 263 (374)
T ss_pred EEEEcCCCCCcccHHHHHHHHHHhcc---C------CCCeEEEEecCccChHHHH
Confidence 9999999987532 233334444210 0 0113456777666555443
No 340
>PRK14700 recombination factor protein RarA; Provisional
Probab=95.77 E-value=0.023 Score=63.28 Aligned_cols=68 Identities=9% Similarity=0.079 Sum_probs=53.3
Q ss_pred hhhHHhhhccceecCCCChhhHHHHHHHHHHHHHHHhhcCCcceecCHHHHHHHHhCCCCChHHHHHHHHHH
Q 001788 888 SQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLVGGVWLGRTGLEDWTEKV 959 (1013)
Q Consensus 888 ~pefl~Rid~iV~F~Pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~~~~~~gar~l~~~ie~~ 959 (1013)
.+.|++|+ .++.|+||+.+++..++++.+.... .+ ....+.++++++++|+..+-..+|..-+.+|-.
T Consensus 24 n~ALlSR~-~v~~l~~L~~~di~~il~ral~~~~-~~--~~~~~~i~~~al~~ia~~a~GDaR~aLN~LE~a 91 (300)
T PRK14700 24 NDALVSRL-FILRLKRLSLVATQKLIEKALSQDE-VL--AKHKFKIDDGLYNAMHNYNEGDCRKILNLLERM 91 (300)
T ss_pred cHhhhhhh-heeeecCCCHHHHHHHHHHHHHhhh-cc--CCcCCCcCHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 45799999 9999999999999999999887521 11 123578999999999998866668666666653
No 341
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.74 E-value=0.028 Score=67.59 Aligned_cols=89 Identities=18% Similarity=0.224 Sum_probs=59.8
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCCCCceeeeC-CCCCCCCC-----cccccccchhhhHHHHHHcCCCEEEEEeCCCC
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGASPIMIPLG-PRRDHEEP-----EVRVRGKTALDKIGEAVKRNPFSVILLEDIDE 740 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id-~s~~~~~~-----~~g~~G~~~~~~L~eal~~~p~~VV~lDEIdk 740 (1013)
.++|+||+|+|||++..++-..+......++.+. .-+|.... ...-.|.++...+..+++..| +||++.||-.
T Consensus 244 lilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~~~~~q~~v~~~~g~~f~~~lr~~LR~dP-DvI~vGEiRd 322 (486)
T TIGR02533 244 IILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIEGIGQIQVNPKIGLTFAAGLRAILRQDP-DIIMVGEIRD 322 (486)
T ss_pred EEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeecCCCceEEEccccCccHHHHHHHHHhcCC-CEEEEeCCCC
Confidence 4999999999999999987776654434455443 22332110 001124445566777888888 9999999976
Q ss_pred CCHHHHHHHHHHHHcceE
Q 001788 741 ADMVVRGNIKRAMERGRL 758 (1013)
Q Consensus 741 a~~~vq~~LL~~le~G~l 758 (1013)
. +.....+++..+|.+
T Consensus 323 ~--eta~~a~~aa~tGHl 338 (486)
T TIGR02533 323 L--ETAQIAIQASLTGHL 338 (486)
T ss_pred H--HHHHHHHHHHHhCCc
Confidence 4 556677888888875
No 342
>PHA00729 NTP-binding motif containing protein
Probab=95.72 E-value=0.011 Score=63.47 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=21.8
Q ss_pred EEEeccCCCccchHHHHHHHHhc
Q 001788 668 LLFMGPDRVGKKKMASALSELVS 690 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~ 690 (1013)
++++|+||||||++|.+|++.+.
T Consensus 20 IlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 20 AVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999875
No 343
>PRK10436 hypothetical protein; Provisional
Probab=95.67 E-value=0.037 Score=66.00 Aligned_cols=88 Identities=18% Similarity=0.236 Sum_probs=57.5
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeC-CCCCCCC-C---c-ccccccchhhhHHHHHHcCCCEEEEEeCCCCC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLG-PRRDHEE-P---E-VRVRGKTALDKIGEAVKRNPFSVILLEDIDEA 741 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id-~s~~~~~-~---~-~g~~G~~~~~~L~eal~~~p~~VV~lDEIdka 741 (1013)
+|+.||+|+|||++..++-+.+......++.+. .-+|... . . ..-.|.++...+...++..| +||++.||-..
T Consensus 221 iLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l~gi~Q~~v~~~~g~~f~~~lr~~LR~dP-DvI~vGEIRD~ 299 (462)
T PRK10436 221 ILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPLAGINQTQIHPKAGLTFQRVLRALLRQDP-DVIMVGEIRDG 299 (462)
T ss_pred EEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccCCCcceEeeCCccCcCHHHHHHHHhcCCC-CEEEECCCCCH
Confidence 999999999999998877777654434444433 2233211 0 0 00123445556667777777 99999999764
Q ss_pred CHHHHHHHHHHHHcceE
Q 001788 742 DMVVRGNIKRAMERGRL 758 (1013)
Q Consensus 742 ~~~vq~~LL~~le~G~l 758 (1013)
+.....+++..+|.+
T Consensus 300 --eta~~al~AA~TGHl 314 (462)
T PRK10436 300 --ETAEIAIKAAQTGHL 314 (462)
T ss_pred --HHHHHHHHHHHcCCc
Confidence 556677788888875
No 344
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.028 Score=60.74 Aligned_cols=118 Identities=11% Similarity=0.108 Sum_probs=85.0
Q ss_pred ccCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-cc-cchhhhHHHHHHHHHHHHhhcCCCCceEEEecchhH
Q 001788 203 CGGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-FT-CDKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKW 278 (1013)
Q Consensus 203 ~vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~~-~~rge~e~r~~~l~~~~~~~~~~~~~~il~idel~~ 278 (1013)
+-|+| |||-.++++|.| -++-|+.+=-+ +. -|-||=..-+.+|++-++. .+-.|||+|||..
T Consensus 216 lygppgtgktl~aravanr----------tdacfirvigselvqkyvgegarmvrelf~mart----kkaciiffdeida 281 (435)
T KOG0729|consen 216 LYGPPGTGKTLCARAVANR----------TDACFIRVIGSELVQKYVGEGARMVRELFEMART----KKACIIFFDEIDA 281 (435)
T ss_pred EeCCCCCchhHHHHHHhcc----------cCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcc----cceEEEEeecccc
Confidence 39999 999999999988 67788887666 54 4889888888899998887 7899999999998
Q ss_pred HHhcccc-cCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEecCH-HHHHHhhhcCCCC
Q 001788 279 LVEQQVT-SFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATC-ETYLRCQVYHPSM 344 (1013)
Q Consensus 279 l~~~~~~-~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~IgatT~-~~Y~k~~~~~~al 344 (1013)
+-|+.-. +.|+. ++..+. .-|+-|-|..+- .||.+.++-||+. ++....+.+...|
T Consensus 282 iggarfddg~ggd--------nevqrt-mleli~qldgfd-prgnikvlmatnrpdtldpallrpgrl 339 (435)
T KOG0729|consen 282 IGGARFDDGAGGD--------NEVQRT-MLELINQLDGFD-PRGNIKVLMATNRPDTLDPALLRPGRL 339 (435)
T ss_pred ccCccccCCCCCc--------HHHHHH-HHHHHHhccCCC-CCCCeEEEeecCCCCCcCHhhcCCccc
Confidence 8776521 22211 122222 226778888888 8999999999965 6643333333333
No 345
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.65 E-value=0.15 Score=60.24 Aligned_cols=78 Identities=13% Similarity=0.196 Sum_probs=46.0
Q ss_pred CceEEEeccCCCccchHHHHHHHHhc-CCCCceeeeCCCCCCCCC------------ccccc-c--cchhhhHHH---HH
Q 001788 665 DMWLLFMGPDRVGKKKMASALSELVS-GASPIMIPLGPRRDHEEP------------EVRVR-G--KTALDKIGE---AV 725 (1013)
Q Consensus 665 ~~~lLf~Gp~GvGKT~lAr~LA~~l~-~~~~~~i~id~s~~~~~~------------~~g~~-G--~~~~~~L~e---al 725 (1013)
..+++|.|++|+|||+++.-||..+. .......-+++..|.... .+-|. + ........+ ..
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~ 178 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYA 178 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998864 233344445554442110 01111 1 111111122 23
Q ss_pred HcCCCEEEEEeCCCCCC
Q 001788 726 KRNPFSVILLEDIDEAD 742 (1013)
Q Consensus 726 ~~~p~~VV~lDEIdka~ 742 (1013)
....+.+|++|=..+.+
T Consensus 179 ~~~~~DvVIIDTaGr~~ 195 (428)
T TIGR00959 179 KENGFDVVIVDTAGRLQ 195 (428)
T ss_pred HhcCCCEEEEeCCCccc
Confidence 34567899999988775
No 346
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.58 E-value=0.031 Score=59.14 Aligned_cols=107 Identities=15% Similarity=0.210 Sum_probs=60.9
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCCC--CceeeeCCCCCCCCCc------------cccc---ccchhhhHHHH---HH
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGAS--PIMIPLGPRRDHEEPE------------VRVR---GKTALDKIGEA---VK 726 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~~--~~~i~id~s~~~~~~~------------~g~~---G~~~~~~L~ea---l~ 726 (1013)
+++|.||+|+|||+.+--||..+.... ..++..|. |-.+.. |-+. ..+....+.++ .+
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~--~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADT--YRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEEST--SSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCC--CCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 599999999999998888876664333 34455553 221110 0011 11112223233 34
Q ss_pred cCCCEEEEEeCCCCCCH--HHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchh
Q 001788 727 RNPFSVILLEDIDEADM--VVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLK 785 (1013)
Q Consensus 727 ~~p~~VV~lDEIdka~~--~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~ 785 (1013)
.+.+.+||||=..+.+. +....|.++++.- .-..+++|+.++.+.+.+.
T Consensus 81 ~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~----------~~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSPRDEELLEELKKLLEAL----------NPDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp HTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHH----------SSSEEEEEEEGGGGGHHHH
T ss_pred hcCCCEEEEecCCcchhhHHHHHHHHHHhhhc----------CCccceEEEecccChHHHH
Confidence 46678999999998874 3444555555421 1234568888887765544
No 347
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.54 E-value=0.05 Score=63.89 Aligned_cols=82 Identities=23% Similarity=0.299 Sum_probs=51.6
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccccccchhhhHHHHH--HcCCCEEEEEeCCCCCCHH
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGKTALDKIGEAV--KRNPFSVILLEDIDEADMV 744 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal--~~~p~~VV~lDEIdka~~~ 744 (1013)
.+++.||-+||||++.+.+.+.+... ++.++..+... ......+.+.... .......+|||||...+ +
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~------~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v~-~ 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRL------DRIELLDLLRAYIELKEREKSYIFLDEIQNVP-D 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhc------chhhHHHHHHHHHHhhccCCceEEEecccCch-h
Confidence 39999999999999999888877533 44444332111 0111111111111 11134699999999995 5
Q ss_pred HHHHHHHHHHcceE
Q 001788 745 VRGNIKRAMERGRL 758 (1013)
Q Consensus 745 vq~~LL~~le~G~l 758 (1013)
.+..|..+.+.|..
T Consensus 109 W~~~lk~l~d~~~~ 122 (398)
T COG1373 109 WERALKYLYDRGNL 122 (398)
T ss_pred HHHHHHHHHccccc
Confidence 88888888887664
No 348
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.074 Score=59.01 Aligned_cols=125 Identities=14% Similarity=0.148 Sum_probs=85.7
Q ss_pred ccCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-c-ccchhhhHHHHHHHHHHHHhhcCCCCceEEEecchhH
Q 001788 203 CGGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-F-TCDKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKW 278 (1013)
Q Consensus 203 ~vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~-~~~rge~e~r~~~l~~~~~~~~~~~~~~il~idel~~ 278 (1013)
+-|.| |||-.++.+|.. =|+.++....+ + .+|-||-..=|.+-.+.+++ .-+.|||+|||+.
T Consensus 171 l~GppGtGKTlla~~Vaa~----------mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~----~~pciifmdeiDA 236 (388)
T KOG0651|consen 171 LYGPPGTGKTLLARAVAAT----------MGVNFLKVVSSALVDKYIGESARLIRDMFRYARE----VIPCIIFMDEIDA 236 (388)
T ss_pred EeCCCCCchhHHHHHHHHh----------cCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhh----hCceEEeehhhhh
Confidence 47888 999999998877 45667777767 5 46999998888888889888 5789999999998
Q ss_pred HHhcccccCC-CCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEecCH-HHHHHhhhcCCCCCCCCCC-eeeec
Q 001788 279 LVEQQVTSFG-VPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATC-ETYLRCQVYHPSMENDWDL-QAVPI 355 (1013)
Q Consensus 279 l~~~~~~~~g-~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~IgatT~-~~Y~k~~~~~~ale~~~rf-q~v~v 355 (1013)
+.|-..+ .| +++ +..+... |+++|=+..+- .-|+|.+|-||+. ++ .||+|-...|+ ..+.+
T Consensus 237 igGRr~s-e~Ts~d----reiqrTL----MeLlnqmdgfd-~l~rVk~ImatNrpdt------LdpaLlRpGRldrk~~i 300 (388)
T KOG0651|consen 237 IGGRRFS-EGTSSD----REIQRTL----MELLNQMDGFD-TLHRVKTIMATNRPDT------LDPALLRPGRLDRKVEI 300 (388)
T ss_pred hccEEec-cccchh----HHHHHHH----HHHHHhhccch-hcccccEEEecCCccc------cchhhcCCccccceecc
Confidence 8776532 22 111 1112222 35666555555 5889999999964 66 46666555555 34445
Q ss_pred cC
Q 001788 356 AA 357 (1013)
Q Consensus 356 ~e 357 (1013)
|-
T Consensus 301 Pl 302 (388)
T KOG0651|consen 301 PL 302 (388)
T ss_pred CC
Confidence 53
No 349
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.51 E-value=0.033 Score=69.87 Aligned_cols=108 Identities=13% Similarity=0.181 Sum_probs=67.8
Q ss_pred cCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccccccchhhhHHHHHHHHHHHHhhcCCCCceEEEecchhHHHh
Q 001788 204 GGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKDFTCDKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKWLVE 281 (1013)
Q Consensus 204 vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~~~~rge~e~r~~~l~~~~~~~~~~~~~~il~idel~~l~~ 281 (1013)
.|+| |||.++..++..+ +.+++.++....+. .++.+.++.+.+.+... +.+.||||||+|.+-.
T Consensus 58 ~GPpGtGKTTLA~aIA~~~----------~~~f~~lna~~~~i-~dir~~i~~a~~~l~~~---~~~~IL~IDEIh~Ln~ 123 (725)
T PRK13341 58 YGPPGVGKTTLARIIANHT----------RAHFSSLNAVLAGV-KDLRAEVDRAKERLERH---GKRTILFIDEVHRFNK 123 (725)
T ss_pred ECCCCCCHHHHHHHHHHHh----------cCcceeehhhhhhh-HHHHHHHHHHHHHhhhc---CCceEEEEeChhhCCH
Confidence 9999 9999999999764 23455555332221 12222233332222222 4678999999998753
Q ss_pred cccccCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEecCHHHHHHhhhcCCCCCCCCCCeeeeccC
Q 001788 282 QQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATCETYLRCQVYHPSMENDWDLQAVPIAA 357 (1013)
Q Consensus 282 ~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~IgatT~~~Y~k~~~~~~ale~~~rfq~v~v~e 357 (1013)
.. -+.|-+.+ ..|.+.+||+||...|.+. ++++ ..|.+.+.++.
T Consensus 124 ~q--------------------------QdaLL~~l-E~g~IiLI~aTTenp~~~l---~~aL--~SR~~v~~l~p 167 (725)
T PRK13341 124 AQ--------------------------QDALLPWV-ENGTITLIGATTENPYFEV---NKAL--VSRSRLFRLKS 167 (725)
T ss_pred HH--------------------------HHHHHHHh-cCceEEEEEecCCChHhhh---hhHh--hccccceecCC
Confidence 21 22344566 4899999999998665543 4677 56677787776
No 350
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.45 E-value=0.0068 Score=62.36 Aligned_cols=62 Identities=15% Similarity=0.171 Sum_probs=38.2
Q ss_pred cccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCC
Q 001788 632 KVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRR 703 (1013)
Q Consensus 632 ~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~ 703 (1013)
+++|.++.++.+...+. ...+..+ .++++.|++|+|||++.+.+...+......++.+++..
T Consensus 1 ~fvgR~~e~~~l~~~l~-~~~~~~~---------~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~ 62 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLD-AAQSGSP---------RNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDD 62 (185)
T ss_dssp --TT-HHHHHHHHHTTG-GTSS--------------EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEET
T ss_pred CCCCHHHHHHHHHHHHH-HHHcCCC---------cEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEec
Confidence 36899999999888885 2111111 23999999999999999988877764433366666554
No 351
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.45 E-value=0.067 Score=61.49 Aligned_cols=85 Identities=19% Similarity=0.256 Sum_probs=53.0
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeC-CCCCCCCCcc-----------cccccchhhhHHHHHHcCCCEEEEE
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLG-PRRDHEEPEV-----------RVRGKTALDKIGEAVKRNPFSVILL 735 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id-~s~~~~~~~~-----------g~~G~~~~~~L~eal~~~p~~VV~l 735 (1013)
+++.||+|+|||+++++|...+.... .++.+. ..++....+. +..+.+....+..+++.+| ..|++
T Consensus 165 ilI~G~tGSGKTTll~aLl~~i~~~~-rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~p-D~Iiv 242 (344)
T PRK13851 165 MLLCGPTGSGKTTMSKTLISAIPPQE-RLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRP-DRILL 242 (344)
T ss_pred EEEECCCCccHHHHHHHHHcccCCCC-CEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCC-CeEEE
Confidence 99999999999999999999876543 333332 2222110000 0011222344556777777 78889
Q ss_pred eCCCCCCHHHHHHHHHHHHcce
Q 001788 736 EDIDEADMVVRGNIKRAMERGR 757 (1013)
Q Consensus 736 DEIdka~~~vq~~LL~~le~G~ 757 (1013)
-|+-- .+... +++++.+|.
T Consensus 243 GEiR~--~ea~~-~l~a~~tGh 261 (344)
T PRK13851 243 GEMRD--DAAWA-YLSEVVSGH 261 (344)
T ss_pred EeeCc--HHHHH-HHHHHHhCC
Confidence 99985 35554 677887765
No 352
>PRK08118 topology modulation protein; Reviewed
Probab=95.43 E-value=0.011 Score=60.95 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=27.3
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGP 701 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~ 701 (1013)
++++||+|+|||++|+.|++.+. .+++.+|.
T Consensus 4 I~I~G~~GsGKSTlak~L~~~l~---~~~~~lD~ 34 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKLN---IPVHHLDA 34 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC---CCceecch
Confidence 89999999999999999999886 66777773
No 353
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.055 Score=58.07 Aligned_cols=126 Identities=11% Similarity=0.139 Sum_probs=89.7
Q ss_pred cCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-ccc-chhhhHHHHHHHHHHHHhhcCCCCceEEEecchhHH
Q 001788 204 GGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-FTC-DKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKWL 279 (1013)
Q Consensus 204 vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~~~-~rge~e~r~~~l~~~~~~~~~~~~~~il~idel~~l 279 (1013)
-|+| |||-+++.+|.- ..+.++.++-+ +.. |-||=..-..+|+--+++ +.+.|+|.|||..+
T Consensus 187 ygppgtGktLlaraVahh----------t~c~firvsgselvqk~igegsrmvrelfvmare----hapsiifmdeidsi 252 (404)
T KOG0728|consen 187 YGPPGTGKTLLARAVAHH----------TDCTFIRVSGSELVQKYIGEGSRMVRELFVMARE----HAPSIIFMDEIDSI 252 (404)
T ss_pred ecCCCCchhHHHHHHHhh----------cceEEEEechHHHHHHHhhhhHHHHHHHHHHHHh----cCCceEeeeccccc
Confidence 8888 999999999976 78899999988 543 888877778889988888 79999999999998
Q ss_pred HhcccccCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEecCHHHHHHhhhcCCCCCCCCCC-eeeeccC
Q 001788 280 VEQQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATCETYLRCQVYHPSMENDWDL-QAVPIAA 357 (1013)
Q Consensus 280 ~~~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~IgatT~~~Y~k~~~~~~ale~~~rf-q~v~v~e 357 (1013)
-.+...++++ + -.+..+ -.-|+.|-|..+- +.-.+.+|-||+.=. -.||||=..-|. ..|..|.
T Consensus 253 gs~r~e~~~g---g----dsevqr-tmlellnqldgfe-atknikvimatnrid-----ild~allrpgridrkiefp~ 317 (404)
T KOG0728|consen 253 GSSRVESGSG---G----DSEVQR-TMLELLNQLDGFE-ATKNIKVIMATNRID-----ILDPALLRPGRIDRKIEFPP 317 (404)
T ss_pred ccccccCCCC---c----cHHHHH-HHHHHHHhccccc-cccceEEEEeccccc-----cccHhhcCCCcccccccCCC
Confidence 7665432210 0 012222 2237788888888 788999999997633 356776333333 3455554
No 354
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.38 E-value=0.073 Score=60.13 Aligned_cols=85 Identities=15% Similarity=0.231 Sum_probs=53.4
Q ss_pred EEEeccCCCccchHHHHHHHHhcCC--CCceeeeCC-CCCCCCCccccc------cc-chhhhHHHHHHcCCCEEEEEeC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGA--SPIMIPLGP-RRDHEEPEVRVR------GK-TALDKIGEAVKRNPFSVILLED 737 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~--~~~~i~id~-s~~~~~~~~g~~------G~-~~~~~L~eal~~~p~~VV~lDE 737 (1013)
+++.||+|+|||+++++|...+... ...++.+.- .++.-. .+..+ +. +....+..+++.+| ..|++.|
T Consensus 135 ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~-~~~~v~~~~~~~~~~~~~~l~~aLR~~p-D~iivGE 212 (299)
T TIGR02782 135 ILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCA-APNVVQLRTSDDAISMTRLLKATLRLRP-DRIIVGE 212 (299)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCC-CCCEEEEEecCCCCCHHHHHHHHhcCCC-CEEEEec
Confidence 9999999999999999999887532 233343332 121110 00000 11 23345666777777 7888999
Q ss_pred CCCCCHHHHHHHHHHHHcce
Q 001788 738 IDEADMVVRGNIKRAMERGR 757 (1013)
Q Consensus 738 Idka~~~vq~~LL~~le~G~ 757 (1013)
|-. ++... +++++..|.
T Consensus 213 iR~--~ea~~-~l~a~~tGh 229 (299)
T TIGR02782 213 VRG--GEALD-LLKAWNTGH 229 (299)
T ss_pred cCC--HHHHH-HHHHHHcCC
Confidence 985 35544 588998775
No 355
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.36 E-value=0.092 Score=59.48 Aligned_cols=40 Identities=18% Similarity=0.144 Sum_probs=33.2
Q ss_pred ceEEEeccCCCccchHHHHHHHHhcCC---CCceeeeCCCCCC
Q 001788 666 MWLLFMGPDRVGKKKMASALSELVSGA---SPIMIPLGPRRDH 705 (1013)
Q Consensus 666 ~~lLf~Gp~GvGKT~lAr~LA~~l~~~---~~~~i~id~s~~~ 705 (1013)
.++.+.|+=|+|||++.+.+-+.+... ...++.+|.-.|.
T Consensus 21 ~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~ 63 (325)
T PF07693_consen 21 FVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYD 63 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCC
Confidence 349999999999999999999998766 5678888875553
No 356
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.31 E-value=0.18 Score=58.32 Aligned_cols=88 Identities=14% Similarity=0.094 Sum_probs=54.5
Q ss_pred CceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCC------------cccccccchhhhHHHHHHc----C
Q 001788 665 DMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEP------------EVRVRGKTALDKIGEAVKR----N 728 (1013)
Q Consensus 665 ~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~------------~~g~~G~~~~~~L~eal~~----~ 728 (1013)
..+++|+||+|+|||+++..||..+.........+++..|..+. .+-+... ....+.+++.. .
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~-dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVAT-SPAELEEAVQYMTYVN 284 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecC-CHHHHHHHHHHHHhcC
Confidence 45699999999999999999998775444444455555553221 0112222 23445555543 3
Q ss_pred CCEEEEEeCCCCCCH--HHHHHHHHHH
Q 001788 729 PFSVILLEDIDEADM--VVRGNIKRAM 753 (1013)
Q Consensus 729 p~~VV~lDEIdka~~--~vq~~LL~~l 753 (1013)
.+.+||+|=..+.+. .....|..++
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~ 311 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYT 311 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHh
Confidence 468999999988763 3444444444
No 357
>PRK06696 uridine kinase; Validated
Probab=95.31 E-value=0.028 Score=60.57 Aligned_cols=57 Identities=18% Similarity=0.176 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCC
Q 001788 638 EAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRD 704 (1013)
Q Consensus 638 ~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~ 704 (1013)
+.+..|+..+..... .+ ...+.+.|++|+|||++|+.|++.+.....+.+.+.+..|
T Consensus 5 ~~~~~la~~~~~~~~----~~------~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf 61 (223)
T PRK06696 5 QLIKELAEHILTLNL----TR------PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDF 61 (223)
T ss_pred HHHHHHHHHHHHhCC----CC------ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccc
Confidence 455666666654221 11 2349999999999999999999999644456777777765
No 358
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.30 E-value=0.018 Score=61.65 Aligned_cols=59 Identities=19% Similarity=0.201 Sum_probs=35.9
Q ss_pred cCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccccccchhhhHHHHHHHHHHHHhhcCCCCceEEEecchhHHHh
Q 001788 204 GGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKDFTCDKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKWLVE 281 (1013)
Q Consensus 204 vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~~~~rge~e~r~~~l~~~~~~~~~~~~~~il~idel~~l~~ 281 (1013)
-|+| |||.++.=+|+. -|+.+..++... -++..+|...+.+. +.+-||||||||.+=.
T Consensus 56 ~GPPG~GKTTLA~IIA~e----------~~~~~~~~sg~~-------i~k~~dl~~il~~l---~~~~ILFIDEIHRlnk 115 (233)
T PF05496_consen 56 YGPPGLGKTTLARIIANE----------LGVNFKITSGPA-------IEKAGDLAAILTNL---KEGDILFIDEIHRLNK 115 (233)
T ss_dssp ESSTTSSHHHHHHHHHHH----------CT--EEEEECCC---------SCHHHHHHHHT-----TT-EEEECTCCC--H
T ss_pred ECCCccchhHHHHHHHhc----------cCCCeEeccchh-------hhhHHHHHHHHHhc---CCCcEEEEechhhccH
Confidence 9999 999999888877 445566555331 12334455555554 5688999999998865
Q ss_pred c
Q 001788 282 Q 282 (1013)
Q Consensus 282 ~ 282 (1013)
.
T Consensus 116 ~ 116 (233)
T PF05496_consen 116 A 116 (233)
T ss_dssp H
T ss_pred H
Confidence 4
No 359
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.30 E-value=0.053 Score=62.75 Aligned_cols=88 Identities=16% Similarity=0.187 Sum_probs=55.9
Q ss_pred EEEeccCCCccchHHHHHHHHhcCC---CCceeeeC-CCCCCCCC---cccc-----cc---cchhhhHHHHHHcCCCEE
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGA---SPIMIPLG-PRRDHEEP---EVRV-----RG---KTALDKIGEAVKRNPFSV 732 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~---~~~~i~id-~s~~~~~~---~~g~-----~G---~~~~~~L~eal~~~p~~V 732 (1013)
++++||+|+|||++.++|.+.+... ...++.+. .-+|.... ..+. ++ .+....+..+++..| .+
T Consensus 137 ilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~P-d~ 215 (358)
T TIGR02524 137 VFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRKP-HA 215 (358)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccCC-CE
Confidence 9999999999999999999987421 11222221 12221100 0000 01 123345666788888 68
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcceE
Q 001788 733 ILLEDIDEADMVVRGNIKRAMERGRL 758 (1013)
Q Consensus 733 V~lDEIdka~~~vq~~LL~~le~G~l 758 (1013)
+++.|+. +.+.....+++..+|..
T Consensus 216 i~vGEiR--d~et~~~al~aa~tGh~ 239 (358)
T TIGR02524 216 ILVGEAR--DAETISAALEAALTGHP 239 (358)
T ss_pred EeeeeeC--CHHHHHHHHHHHHcCCc
Confidence 9999877 56777888999988864
No 360
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.29 E-value=0.014 Score=60.24 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=19.9
Q ss_pred EEEeccCCCccchHHHHHHHHh
Q 001788 668 LLFMGPDRVGKKKMASALSELV 689 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l 689 (1013)
++++|++|+|||++.+.+.+.+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 8999999999999999999888
No 361
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.28 E-value=0.054 Score=61.43 Aligned_cols=85 Identities=16% Similarity=0.236 Sum_probs=52.0
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeC-CCCCCCCCcc-----------cccccchhhhHHHHHHcCCCEEEEE
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLG-PRRDHEEPEV-----------RVRGKTALDKIGEAVKRNPFSVILL 735 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id-~s~~~~~~~~-----------g~~G~~~~~~L~eal~~~p~~VV~l 735 (1013)
++|.||+|+|||+++++|...+.... ..+.+. ..++.-..+. +....+....+..+++.+| .+|++
T Consensus 147 ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~p-d~ii~ 224 (308)
T TIGR02788 147 IIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRP-DRIIL 224 (308)
T ss_pred EEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCC-CeEEE
Confidence 99999999999999999998875433 333333 2222111100 0011222334555666676 88999
Q ss_pred eCCCCCCHHHHHHHHHHHHcce
Q 001788 736 EDIDEADMVVRGNIKRAMERGR 757 (1013)
Q Consensus 736 DEIdka~~~vq~~LL~~le~G~ 757 (1013)
||+-. .++.. +++++..|.
T Consensus 225 gE~r~--~e~~~-~l~a~~~g~ 243 (308)
T TIGR02788 225 GELRG--DEAFD-FIRAVNTGH 243 (308)
T ss_pred eccCC--HHHHH-HHHHHhcCC
Confidence 99985 45544 577776654
No 362
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.25 E-value=0.067 Score=60.92 Aligned_cols=85 Identities=12% Similarity=0.170 Sum_probs=53.5
Q ss_pred EEEeccCCCccchHHHHHHHHhc--CCCCceeeeC-CCCCCCCCccccc------ccchhhhHHHHHHcCCCEEEEEeCC
Q 001788 668 LLFMGPDRVGKKKMASALSELVS--GASPIMIPLG-PRRDHEEPEVRVR------GKTALDKIGEAVKRNPFSVILLEDI 738 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~--~~~~~~i~id-~s~~~~~~~~g~~------G~~~~~~L~eal~~~p~~VV~lDEI 738 (1013)
+++.|++|+|||+++++|...+. .....++.+. ..++... .+.++ ..+....+..+++.+| +.|++.||
T Consensus 151 ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~-~~~~v~~~~~~~~~~~~ll~~aLR~~P-D~IivGEi 228 (319)
T PRK13894 151 ILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCA-AENYVQYHTSIDVNMTALLKTTLRMRP-DRILVGEV 228 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccC-CCCEEEEecCCCCCHHHHHHHHhcCCC-CEEEEecc
Confidence 99999999999999999998752 2223333332 2332210 01111 1223445666777777 78889999
Q ss_pred CCCCHHHHHHHHHHHHcce
Q 001788 739 DEADMVVRGNIKRAMERGR 757 (1013)
Q Consensus 739 dka~~~vq~~LL~~le~G~ 757 (1013)
-.. +... +++++..|.
T Consensus 229 R~~--Ea~~-~l~A~~tGh 244 (319)
T PRK13894 229 RGP--EALD-LLMAWNTGH 244 (319)
T ss_pred CCH--HHHH-HHHHHHcCC
Confidence 864 4444 689998875
No 363
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.17 E-value=0.03 Score=57.96 Aligned_cols=33 Identities=15% Similarity=0.033 Sum_probs=24.2
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLG 700 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id 700 (1013)
+++.||||+|||.++..++........+.+.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 799999999999999988766544334444443
No 364
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=95.15 E-value=0.053 Score=65.82 Aligned_cols=33 Identities=9% Similarity=0.263 Sum_probs=26.3
Q ss_pred HHHHHcCCCEEEEEeCC-CCCCHHHHHHHHHHHHc
Q 001788 722 GEAVKRNPFSVILLEDI-DEADMVVRGNIKRAMER 755 (1013)
Q Consensus 722 ~eal~~~p~~VV~lDEI-dka~~~vq~~LL~~le~ 755 (1013)
...+-.+| .++||||. .-++++.+..|++++++
T Consensus 527 ARilL~kP-~~v~LDEATsALDe~~e~~l~q~l~~ 560 (604)
T COG4178 527 ARLLLHKP-KWVFLDEATSALDEETEDRLYQLLKE 560 (604)
T ss_pred HHHHHcCC-CEEEEecchhccChHHHHHHHHHHHh
Confidence 34445566 89999999 56799999999999974
No 365
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.08 E-value=0.054 Score=55.72 Aligned_cols=90 Identities=16% Similarity=0.175 Sum_probs=54.9
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccccccchhhh---------HHHHHHcCCCEEEEEeC
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGKTALDK---------IGEAVKRNPFSVILLED 737 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G~~~~~~---------L~eal~~~p~~VV~lDE 737 (1013)
++.|+|.+|+|||++|.+|.+.|+........+|....-.+...+ .|++..++ +...+..+ ++|+|==
T Consensus 25 viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~d-LgFs~edR~eniRRvaevAkll~da--G~iviva 101 (197)
T COG0529 25 VIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRD-LGFSREDRIENIRRVAEVAKLLADA--GLIVIVA 101 (197)
T ss_pred EEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCC-CCCChHHHHHHHHHHHHHHHHHHHC--CeEEEEE
Confidence 489999999999999999999999887788888865432222221 12222221 22223222 3443333
Q ss_pred CCCCCHHHHHHHHHHHHcceEe
Q 001788 738 IDEADMVVRGNIKRAMERGRLV 759 (1013)
Q Consensus 738 Idka~~~vq~~LL~~le~G~l~ 759 (1013)
+=.-..+..+.-.+.+.+|.|.
T Consensus 102 ~ISP~r~~R~~aR~~~~~~~Fi 123 (197)
T COG0529 102 FISPYREDRQMARELLGEGEFI 123 (197)
T ss_pred eeCccHHHHHHHHHHhCcCceE
Confidence 3333445566667777777665
No 366
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.03 E-value=0.02 Score=58.36 Aligned_cols=31 Identities=16% Similarity=0.207 Sum_probs=26.1
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCCCCceeeeC
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGASPIMIPLG 700 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id 700 (1013)
.++|+|++|+|||++|+.||+.+. .+++..|
T Consensus 6 ~i~l~G~~GsGKstla~~La~~l~---~~~~d~d 36 (175)
T PRK00131 6 NIVLIGFMGAGKSTIGRLLAKRLG---YDFIDTD 36 (175)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC---CCEEECh
Confidence 399999999999999999999984 4566444
No 367
>PHA01747 putative ATP-dependent protease
Probab=95.02 E-value=0.083 Score=60.10 Aligned_cols=102 Identities=12% Similarity=0.128 Sum_probs=63.3
Q ss_pred CceEEEeccCCCccchHHHHHHHHhcCC----C--CceeeeCCCCCCCCCcccccccchhhhHHHHHHcCCCEEEEEeCC
Q 001788 665 DMWLLFMGPDRVGKKKMASALSELVSGA----S--PIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKRNPFSVILLEDI 738 (1013)
Q Consensus 665 ~~~lLf~Gp~GvGKT~lAr~LA~~l~~~----~--~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~~p~~VV~lDEI 738 (1013)
.-.++=.||.|||||++-+.+.+..... . .+-.-.|++. -..|.+|. ..+|+||||
T Consensus 190 NyNliELgPRGTGKS~~f~eis~fsp~~iSGG~~TvA~LFyN~~t----~~~GLVg~--------------~D~VaFDEV 251 (425)
T PHA01747 190 PVHIIELSNRGTGKTTTFVILQELFNFRYYTEPPTYANLVYDAKT----NALGLVFL--------------SNGLIFDEI 251 (425)
T ss_pred CeeEEEecCCCCChhhHHHHhhhcCCceeeCCCCchHHheEecCC----CceeEEee--------------ccEEEEEcc
Confidence 3348889999999999999986633200 0 0000111110 01122222 368999999
Q ss_pred CCCC----HHHHHHHHHHHHcceEecCCCeEee----cCceEEEEecCCCCcch
Q 001788 739 DEAD----MVVRGNIKRAMERGRLVDSYGREIS----LGNVIFILTADWLPDSL 784 (1013)
Q Consensus 739 dka~----~~vq~~LL~~le~G~l~d~~g~~vd----~~n~iiI~TSN~g~~~~ 784 (1013)
.... .++...|...|++|.++.+.+...+ ..++=+||.-|.-...+
T Consensus 252 a~i~f~~~kdiv~IMKdYMesG~FsRG~~~~ss~~sI~a~asiVf~GNin~~~l 305 (425)
T PHA01747 252 QTWKDSNMRAINSTLSTGMENCVWTRGAGTESDAATIVRCIPIIFAGNPDSSTL 305 (425)
T ss_pred ccccCCCHHHHHHHHHHHhhcceeecCCCCcccchhhccceeEEEecCCCCccc
Confidence 8754 5788999999999999976653221 12444888888764443
No 368
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.01 E-value=0.012 Score=58.10 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=22.0
Q ss_pred eEEEeccCCCccchHHHHHHHHhc
Q 001788 667 WLLFMGPDRVGKKKMASALSELVS 690 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~ 690 (1013)
+++++||||+|||++|+.|++.+.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 489999999999999999998875
No 369
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.00 E-value=0.38 Score=57.95 Aligned_cols=80 Identities=10% Similarity=0.204 Sum_probs=46.3
Q ss_pred CceEEEeccCCCccchHHHHHHHHhcCC--CCceeeeCCCCCCCCC---------ccc--ccccchhhhHHHHHHc-CCC
Q 001788 665 DMWLLFMGPDRVGKKKMASALSELVSGA--SPIMIPLGPRRDHEEP---------EVR--VRGKTALDKIGEAVKR-NPF 730 (1013)
Q Consensus 665 ~~~lLf~Gp~GvGKT~lAr~LA~~l~~~--~~~~i~id~s~~~~~~---------~~g--~~G~~~~~~L~eal~~-~p~ 730 (1013)
..++.|+||+|+|||+++..|+..+... ...+..+++..|..+. ..+ +........+.+.+++ ..+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~ 429 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY 429 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence 3458999999999999999998765322 1233334443332211 011 1111122345555543 346
Q ss_pred EEEEEeCCCCCCHH
Q 001788 731 SVILLEDIDEADMV 744 (1013)
Q Consensus 731 ~VV~lDEIdka~~~ 744 (1013)
.+||||.....+.+
T Consensus 430 DLVLIDTaG~s~~D 443 (559)
T PRK12727 430 KLVLIDTAGMGQRD 443 (559)
T ss_pred CEEEecCCCcchhh
Confidence 89999999887543
No 370
>COG1485 Predicted ATPase [General function prediction only]
Probab=94.99 E-value=0.11 Score=58.81 Aligned_cols=103 Identities=20% Similarity=0.335 Sum_probs=59.2
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeC--CCCCCCCCcccccccc-hhhhHHHHHHcCCCEEEEEeCCCCCCHH
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLG--PRRDHEEPEVRVRGKT-ALDKIGEAVKRNPFSVILLEDIDEADMV 744 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id--~s~~~~~~~~g~~G~~-~~~~L~eal~~~p~~VV~lDEIdka~~~ 744 (1013)
+.|+|+-|+|||.|.-..-+.+......-+++. |....... --..|.. ....+...+.+ ...|++|||++=-|..
T Consensus 68 lYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l-~~l~g~~dpl~~iA~~~~~-~~~vLCfDEF~VtDI~ 145 (367)
T COG1485 68 LYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRL-HTLQGQTDPLPPIADELAA-ETRVLCFDEFEVTDIA 145 (367)
T ss_pred EEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHH-HHHcCCCCccHHHHHHHHh-cCCEEEeeeeeecChH
Confidence 999999999999998887777765433333322 10000000 0012222 22333444433 3479999999766654
Q ss_pred ---HHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchh
Q 001788 745 ---VRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLK 785 (1013)
Q Consensus 745 ---vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~ 785 (1013)
+...|+..|= -+++++|+|||...+++-
T Consensus 146 DAMiL~rL~~~Lf-------------~~GV~lvaTSN~~P~~LY 176 (367)
T COG1485 146 DAMILGRLLEALF-------------ARGVVLVATSNTAPDNLY 176 (367)
T ss_pred HHHHHHHHHHHHH-------------HCCcEEEEeCCCChHHhc
Confidence 4444444331 124568999999887763
No 371
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.93 E-value=0.12 Score=58.75 Aligned_cols=85 Identities=12% Similarity=0.212 Sum_probs=52.8
Q ss_pred EEEeccCCCccchHHHHHHHHhcC--CCCceeeeC-CCCCCCCCcccc------cccchhhhHHHHHHcCCCEEEEEeCC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSG--ASPIMIPLG-PRRDHEEPEVRV------RGKTALDKIGEAVKRNPFSVILLEDI 738 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~--~~~~~i~id-~s~~~~~~~~g~------~G~~~~~~L~eal~~~p~~VV~lDEI 738 (1013)
+++.|++|+|||+++++|...+.. ....++.+. ..++... .+.. .+.+....+..+++.+| ..|++-||
T Consensus 147 ilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~-~~n~v~l~~~~~~~~~~lv~~aLR~~P-D~IivGEi 224 (323)
T PRK13833 147 IVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCA-AENAVALHTSDTVDMARLLKSTMRLRP-DRIIVGEV 224 (323)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccC-CCCEEEeccCCCcCHHHHHHHHhCCCC-CEEEEeec
Confidence 999999999999999999988731 122333333 2222110 0111 01223345556777777 78889999
Q ss_pred CCCCHHHHHHHHHHHHcce
Q 001788 739 DEADMVVRGNIKRAMERGR 757 (1013)
Q Consensus 739 dka~~~vq~~LL~~le~G~ 757 (1013)
-.. +.. .+++++..|.
T Consensus 225 Rg~--ea~-~~l~a~~tGh 240 (323)
T PRK13833 225 RDG--AAL-TLLKAWNTGH 240 (323)
T ss_pred CCH--HHH-HHHHHHcCCC
Confidence 753 454 4688887775
No 372
>PRK13947 shikimate kinase; Provisional
Probab=94.89 E-value=0.023 Score=58.23 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=27.5
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCCCCceeeeCC
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGASPIMIPLGP 701 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~ 701 (1013)
++++.|++|+|||++|+.||+.+. .+|+..|.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg---~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS---FGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC---CCEEECch
Confidence 399999999999999999999985 66776663
No 373
>PRK03839 putative kinase; Provisional
Probab=94.84 E-value=0.021 Score=59.26 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=25.5
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLG 700 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id 700 (1013)
++|.|+||+|||++++.||+.+. .+++.+|
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~---~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLG---YEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC---CcEEehh
Confidence 89999999999999999999885 5565544
No 374
>PHA02624 large T antigen; Provisional
Probab=94.69 E-value=0.058 Score=65.28 Aligned_cols=57 Identities=26% Similarity=0.423 Sum_probs=38.7
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccccccchhhhHHHHHHcCCCEEEEEeCCCC
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKRNPFSVILLEDIDE 740 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~~p~~VV~lDEIdk 740 (1013)
.++|+||+|+|||+++++|.+.+.|. .+.++++.. ..+-..+.+.++ .+++||++-.
T Consensus 433 ~il~~GPpnTGKTtf~~sLl~~L~G~---vlsVNsPt~--------ks~FwL~pl~D~------~~~l~dD~t~ 489 (647)
T PHA02624 433 YWLFKGPVNSGKTTLAAALLDLCGGK---SLNVNCPPD--------KLNFELGCAIDQ------FMVVFEDVKG 489 (647)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCe---EEEeeCCcc--------hhHHHhhhhhhc------eEEEeeeccc
Confidence 39999999999999999999999754 344554421 111123333333 6889999853
No 375
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.63 E-value=0.12 Score=53.09 Aligned_cols=38 Identities=18% Similarity=0.262 Sum_probs=29.0
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCC
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRD 704 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~ 704 (1013)
.++|.|++|+|||++++.++..+.........+|+..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 48999999999999999999887654445555555543
No 376
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.62 E-value=0.11 Score=60.47 Aligned_cols=75 Identities=12% Similarity=0.203 Sum_probs=47.3
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCC---------CC-ccc--ccccchhhhHHHHHHcCCCEEEE
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHE---------EP-EVR--VRGKTALDKIGEAVKRNPFSVIL 734 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~---------~~-~~g--~~G~~~~~~L~eal~~~p~~VV~ 734 (1013)
.+++.|+||+|||+++..++..+.......+.++..+... +. ... +........+.+.+......+|+
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~~lVV 163 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKPDLVI 163 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCCcEEE
Confidence 5999999999999999999877754434555555432110 00 000 11122234566667666668999
Q ss_pred EeCCCCC
Q 001788 735 LEDIDEA 741 (1013)
Q Consensus 735 lDEIdka 741 (1013)
||+|..+
T Consensus 164 IDSIq~l 170 (372)
T cd01121 164 IDSIQTV 170 (372)
T ss_pred EcchHHh
Confidence 9999654
No 377
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=94.60 E-value=0.063 Score=62.00 Aligned_cols=91 Identities=12% Similarity=0.206 Sum_probs=51.0
Q ss_pred eEEEeccCCCccchHHHHHHHHh--cCC--CCceeeeCCCCCC-------CCCcccccccc--hhhhHHHHHH-----cC
Q 001788 667 WLLFMGPDRVGKKKMASALSELV--SGA--SPIMIPLGPRRDH-------EEPEVRVRGKT--ALDKIGEAVK-----RN 728 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l--~~~--~~~~i~id~s~~~-------~~~~~g~~G~~--~~~~L~eal~-----~~ 728 (1013)
++++.|.+|||||.+|-.|++.+ ... ...++..+..... ....++..... ....+...+. ..
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 82 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNPKLKKSDFRKPTSFINNYSESDKEKN 82 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhcccchhhhhhhhhHHHHhhcccccccCC
Confidence 59999999999999999999988 222 2333444432110 00000000000 0111222121 34
Q ss_pred CCEEEEEeCCCCCCHH--------HHHHHHHHHHcce
Q 001788 729 PFSVILLEDIDEADMV--------VRGNIKRAMERGR 757 (1013)
Q Consensus 729 p~~VV~lDEIdka~~~--------vq~~LL~~le~G~ 757 (1013)
.+.|||+||.+++... ..+.|..++...+
T Consensus 83 ~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~~k 119 (352)
T PF09848_consen 83 KYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKRAK 119 (352)
T ss_pred cCCEEEEehhHhhhhccccccccccHHHHHHHHhcCC
Confidence 5789999999999872 3466777776533
No 378
>PRK07261 topology modulation protein; Provisional
Probab=94.59 E-value=0.028 Score=58.11 Aligned_cols=31 Identities=23% Similarity=0.316 Sum_probs=26.3
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGP 701 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~ 701 (1013)
++++|++|+|||++|+.|++.+. .+++.+|.
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~---~~~i~~D~ 33 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYN---CPVLHLDT 33 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC---CCeEecCC
Confidence 89999999999999999998764 56666664
No 379
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.59 E-value=0.47 Score=56.89 Aligned_cols=79 Identities=16% Similarity=0.069 Sum_probs=44.2
Q ss_pred ceEEEeccCCCccchHHHHHHHHhcCC--CCceeeeCCCCCCCCC------------cccccccchhhhHHHHHHcCCCE
Q 001788 666 MWLLFMGPDRVGKKKMASALSELVSGA--SPIMIPLGPRRDHEEP------------EVRVRGKTALDKIGEAVKRNPFS 731 (1013)
Q Consensus 666 ~~lLf~Gp~GvGKT~lAr~LA~~l~~~--~~~~i~id~s~~~~~~------------~~g~~G~~~~~~L~eal~~~p~~ 731 (1013)
.+++|+||+|+|||+++..||..+... ...+.-+++..|..+. .+-+..+...........-..+.
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d 336 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKH 336 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCC
Confidence 469999999999999999999766321 1223334443332110 00011111112222223334557
Q ss_pred EEEEeCCCCCCHH
Q 001788 732 VILLEDIDEADMV 744 (1013)
Q Consensus 732 VV~lDEIdka~~~ 744 (1013)
++++|.....+.+
T Consensus 337 ~VLIDTaGr~~~d 349 (484)
T PRK06995 337 IVLIDTIGMSQRD 349 (484)
T ss_pred eEEeCCCCcChhh
Confidence 9999999877654
No 380
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.52 E-value=0.12 Score=53.57 Aligned_cols=70 Identities=14% Similarity=0.235 Sum_probs=41.9
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCC------------CCcccccccchhhhHHHHHHc--CCCEE
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHE------------EPEVRVRGKTALDKIGEAVKR--NPFSV 732 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~------------~~~~g~~G~~~~~~L~eal~~--~p~~V 732 (1013)
.+++.|++|+|||++|..++..+. .+.+.+....-.. .-+.++.-.+....|.+.+.. ....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~---~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~~~~ 79 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG---LQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAPGRC 79 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC---CCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCCCCE
Confidence 489999999999999999998763 2344444322110 001223333333356666654 23467
Q ss_pred EEEeCCC
Q 001788 733 ILLEDID 739 (1013)
Q Consensus 733 V~lDEId 739 (1013)
|+||-+.
T Consensus 80 VlID~Lt 86 (170)
T PRK05800 80 VLVDCLT 86 (170)
T ss_pred EEehhHH
Confidence 8888764
No 381
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=94.50 E-value=0.12 Score=69.41 Aligned_cols=89 Identities=16% Similarity=0.232 Sum_probs=65.0
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccccc-c---c------hhhhHHHHHHcCCCEEEEEeC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRG-K---T------ALDKIGEAVKRNPFSVILLED 737 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G-~---~------~~~~L~eal~~~p~~VV~lDE 737 (1013)
+||.||+++|||.+++.+|+... ..+++++--+.++- -.|.| | . ..+.+..++++ +..+||||
T Consensus 443 illqG~tssGKtsii~~la~~~g---~~~vrinnhehtd~--qeyig~y~~~~~g~l~freg~LV~Alr~--G~~~vlD~ 515 (1856)
T KOG1808|consen 443 ILLQGPTSSGKTSIIKELARATG---KNIVRINNHEHTDL--QEYIGTYVADDNGDLVFREGVLVQALRN--GDWIVLDE 515 (1856)
T ss_pred eEEecCcCcCchhHHHHHHHHhc---cCceehhccccchH--HHHHHhhhcCCCCCeeeehhHHHHHHHh--CCEEEecc
Confidence 99999999999999999999987 56677665432210 01222 1 0 13456777665 46899999
Q ss_pred CCCCCHHHHHHHHHHHHc-ceEecCCC
Q 001788 738 IDEADMVVRGNIKRAMER-GRLVDSYG 763 (1013)
Q Consensus 738 Idka~~~vq~~LL~~le~-G~l~d~~g 763 (1013)
+.-++.++++.|.+++++ .++--..+
T Consensus 516 lnla~~dvL~aLnrllddnRel~ipe~ 542 (1856)
T KOG1808|consen 516 LNLAPHDVLEALNRLLDDNRELFIPET 542 (1856)
T ss_pred ccccchHHHHHHHhhhhhhcccccccc
Confidence 999999999999999987 55554444
No 382
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.47 E-value=0.11 Score=53.05 Aligned_cols=87 Identities=16% Similarity=0.211 Sum_probs=54.9
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCC-------ccccccc-----chhhhHHHHHHcCCCEEEE
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEP-------EVRVRGK-----TALDKIGEAVKRNPFSVIL 734 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~-------~~g~~G~-----~~~~~L~eal~~~p~~VV~ 734 (1013)
++.+.||+|+|||++.+.|+........ -+.++-....... ..+|+.. ...-.+..++-..| .|++
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~~~~G-~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p-~ill 105 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYKPDSG-EILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNA-RLLI 105 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCC-CEEE
Confidence 4899999999999999999987643322 2334322111110 0122111 11113556666666 8999
Q ss_pred EeCCC-CCCHHHHHHHHHHHHc
Q 001788 735 LEDID-EADMVVRGNIKRAMER 755 (1013)
Q Consensus 735 lDEId-ka~~~vq~~LL~~le~ 755 (1013)
+||-. .+|+.....+.+++.+
T Consensus 106 lDEP~~~LD~~~~~~l~~~l~~ 127 (163)
T cd03216 106 LDEPTAALTPAEVERLFKVIRR 127 (163)
T ss_pred EECCCcCCCHHHHHHHHHHHHH
Confidence 99986 5788888888888863
No 383
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.46 E-value=0.14 Score=51.39 Aligned_cols=82 Identities=13% Similarity=0.282 Sum_probs=54.3
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCccccc-----ccchhhhHHHHHHcCCCEEEEEeCCC-C
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVR-----GKTALDKIGEAVKRNPFSVILLEDID-E 740 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~-----G~~~~~~L~eal~~~p~~VV~lDEId-k 740 (1013)
.+.+.||+|+|||++.+.|+........ -+.+|-.. ..+|+ |....-.+..++-.+| .++++||-. .
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~~G-~i~~~~~~-----~i~~~~~lS~G~~~rv~laral~~~p-~illlDEP~~~ 100 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELEPDEG-IVTWGSTV-----KIGYFEQLSGGEKMRLALAKLLLENP-NLLLLDEPTNH 100 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCce-EEEECCeE-----EEEEEccCCHHHHHHHHHHHHHhcCC-CEEEEeCCccC
Confidence 3899999999999999999887643222 23333210 01121 1111224566777777 899999985 6
Q ss_pred CCHHHHHHHHHHHHc
Q 001788 741 ADMVVRGNIKRAMER 755 (1013)
Q Consensus 741 a~~~vq~~LL~~le~ 755 (1013)
+|+.....|.+++.+
T Consensus 101 LD~~~~~~l~~~l~~ 115 (144)
T cd03221 101 LDLESIEALEEALKE 115 (144)
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888899888864
No 384
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=94.42 E-value=0.31 Score=65.10 Aligned_cols=50 Identities=16% Similarity=0.142 Sum_probs=36.8
Q ss_pred ccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcC
Q 001788 631 EKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSG 691 (1013)
Q Consensus 631 ~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~ 691 (1013)
+.++|.+..++.+...+. ... ...-++.++|+.|+|||++|++++..+..
T Consensus 184 ~~~vG~~~~l~~l~~lL~-----l~~------~~~~vvgI~G~gGiGKTTLA~~l~~~l~~ 233 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLH-----LES------EEVRMVGIWGSSGIGKTTIARALFSRLSR 233 (1153)
T ss_pred ccccchHHHHHHHHHHHc-----ccc------CceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence 357899988888776653 111 11234899999999999999999887654
No 385
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.39 E-value=0.088 Score=57.02 Aligned_cols=35 Identities=11% Similarity=0.114 Sum_probs=24.6
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCCCCceeeeCC
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGASPIMIPLGP 701 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~ 701 (1013)
.+++.|+||+|||.++..++..........+.++.
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 48999999999999999986543333334444443
No 386
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=94.38 E-value=0.065 Score=62.24 Aligned_cols=126 Identities=16% Similarity=0.283 Sum_probs=68.9
Q ss_pred cHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCC-----CCCCC--
Q 001788 636 QQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRR-----DHEEP-- 708 (1013)
Q Consensus 636 Q~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~-----~~~~~-- 708 (1013)
|..+...|..++.. . .| ..+++.||.|||||++.++|...+......++..-.+. +.+|.
T Consensus 6 Q~~~~~~v~~~~~~----~---~~------~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~ 72 (364)
T PF05970_consen 6 QRRVFDTVIEAIEN----E---EG------LNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTI 72 (364)
T ss_pred HHHHHHHHHHHHHc----c---CC------cEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcch
Confidence 66777777776643 1 11 12899999999999999999988855433333222110 00110
Q ss_pred ------cccccccc-----hhhhHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEec
Q 001788 709 ------EVRVRGKT-----ALDKIGEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTA 777 (1013)
Q Consensus 709 ------~~g~~G~~-----~~~~L~eal~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TS 777 (1013)
+.+..... ....+.+.++ .-.+|++|||-.++..+...+-+.|.. +.........|....+|+.-
T Consensus 73 hs~f~i~~~~~~~~~~~~~~~~~~~~~l~--~~~~lIiDEism~~~~~l~~i~~~lr~--i~~~~~~~~pFGG~~vil~G 148 (364)
T PF05970_consen 73 HSFFGIPINNNEKSQCKISKNSRLRERLR--KADVLIIDEISMVSADMLDAIDRRLRD--IRKSKDSDKPFGGKQVILFG 148 (364)
T ss_pred HHhcCccccccccccccccccchhhhhhh--hheeeecccccchhHHHHHHHHHhhhh--hhcccchhhhcCcceEEeeh
Confidence 00000000 0011222222 226899999999999888877665542 11110013456666677765
Q ss_pred C
Q 001788 778 D 778 (1013)
Q Consensus 778 N 778 (1013)
.
T Consensus 149 D 149 (364)
T PF05970_consen 149 D 149 (364)
T ss_pred h
Confidence 4
No 387
>PRK00625 shikimate kinase; Provisional
Probab=94.35 E-value=0.034 Score=57.72 Aligned_cols=30 Identities=23% Similarity=0.394 Sum_probs=26.1
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLG 700 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id 700 (1013)
|+|.|.+|+|||++++.||+.+. .+|+.+|
T Consensus 3 I~LiG~pGsGKTT~~k~La~~l~---~~~id~D 32 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFLS---LPFFDTD 32 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC---CCEEEhh
Confidence 89999999999999999999985 5666555
No 388
>PRK06217 hypothetical protein; Validated
Probab=94.34 E-value=0.033 Score=58.05 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=26.2
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLG 700 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id 700 (1013)
|++.|++|+|||++|+.|++.+. .+++..|
T Consensus 4 I~i~G~~GsGKSTla~~L~~~l~---~~~~~~D 33 (183)
T PRK06217 4 IHITGASGSGTTTLGAALAERLD---IPHLDTD 33 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC---CcEEEcC
Confidence 89999999999999999999874 5666665
No 389
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=94.27 E-value=0.077 Score=60.23 Aligned_cols=30 Identities=17% Similarity=0.345 Sum_probs=26.5
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLG 700 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id 700 (1013)
|+|+|++|+|||++++.||+.+. .+|+.+|
T Consensus 136 I~l~G~~GsGKStvg~~La~~Lg---~~~id~D 165 (309)
T PRK08154 136 IALIGLRGAGKSTLGRMLAARLG---VPFVELN 165 (309)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC---CCEEeHH
Confidence 99999999999999999999886 6677555
No 390
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=94.25 E-value=0.21 Score=57.50 Aligned_cols=86 Identities=21% Similarity=0.275 Sum_probs=55.6
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCc------------ccccccchhhhHHHHHHcCCCEEEEE
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPE------------VRVRGKTALDKIGEAVKRNPFSVILL 735 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~------------~g~~G~~~~~~L~eal~~~p~~VV~l 735 (1013)
+++.|++|+|||++.++|...+......+.--|..++.-..+ .|-.+.+....+..+++.+| ..|++
T Consensus 181 ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~~El~~~~~~~~~l~~r~~~~~g~~~~t~~~ll~~aLR~~P-D~Iiv 259 (340)
T TIGR03819 181 FLISGGTGSGKTTLLSALLALVAPDERIVLVEDAAELRPDHPHVVRLEARPANVEGAGAVTLTDLVRQALRMRP-DRIVV 259 (340)
T ss_pred EEEECCCCCCHHHHHHHHHccCCCCCcEEEECCcceecCCCCCeeeEEeccccccCcCccCHHHHHHHHhccCC-CeEEE
Confidence 999999999999999999988765443333223333321100 01111233455667777787 78889
Q ss_pred eCCCCCCHHHHHHHHHHHHcce
Q 001788 736 EDIDEADMVVRGNIKRAMERGR 757 (1013)
Q Consensus 736 DEIdka~~~vq~~LL~~le~G~ 757 (1013)
-||-- +++.. +++++.+|.
T Consensus 260 GEiRg--~Ea~~-~l~a~~tGh 278 (340)
T TIGR03819 260 GEVRG--AEVVD-LLAALNTGH 278 (340)
T ss_pred eCcCc--HHHHH-HHHHHHcCC
Confidence 99984 46654 589998876
No 391
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.24 E-value=0.034 Score=57.51 Aligned_cols=33 Identities=21% Similarity=0.398 Sum_probs=26.6
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCC
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPR 702 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s 702 (1013)
.++|.|+||+|||++|+.|++.+. .++++++..
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~~---~~~~~~~~D 36 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVLA---EPWLHFGVD 36 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhC---CCccccCcc
Confidence 499999999999999999999874 345555544
No 392
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=94.21 E-value=0.13 Score=62.29 Aligned_cols=50 Identities=18% Similarity=0.294 Sum_probs=32.9
Q ss_pred CCCEEEEEeCCCC--CCHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchhhc
Q 001788 728 NPFSVILLEDIDE--ADMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLKFL 787 (1013)
Q Consensus 728 ~p~~VV~lDEIdk--a~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~~~ 787 (1013)
..|+||+|||++. ++.+++-.||+-+-..+ .+++ +||++.++.++.++++
T Consensus 162 skYsvIIlDEAHERsl~TDiLlGlLKki~~~R--------~~Lk--lIimSATlda~kfS~y 213 (674)
T KOG0922|consen 162 SKYSVIILDEAHERSLHTDILLGLLKKILKKR--------PDLK--LIIMSATLDAEKFSEY 213 (674)
T ss_pred ccccEEEEechhhhhhHHHHHHHHHHHHHhcC--------CCce--EEEEeeeecHHHHHHH
Confidence 4589999999985 55666666665554322 2233 5788877777777665
No 393
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.21 E-value=0.17 Score=53.61 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.8
Q ss_pred eEEEeccCCCccchHHHHHHHHh
Q 001788 667 WLLFMGPDRVGKKKMASALSELV 689 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l 689 (1013)
+++++||+|+|||++.|.|+-..
T Consensus 27 ~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 27 GILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 58999999999999999998655
No 394
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.20 E-value=0.1 Score=58.16 Aligned_cols=94 Identities=7% Similarity=0.022 Sum_probs=62.8
Q ss_pred cCCCcccccCCCcccCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEecccc--ccchhh-hHHHHHHHHHHHHhhcC
Q 001788 190 LYMNPRLQQAGGVCGGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKDF--TCDKAG-IVSKLKDLGALIETKFG 264 (1013)
Q Consensus 190 ~~~np~l~~~~~~~vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~--~~~rge-~e~r~~~l~~~~~~~~~ 264 (1013)
.|.|.+| ||+. |||-+++.||..+ +||-.+.+++- + |||-|| +|.=|-.|+..+.--+.
T Consensus 96 ~KSNILL-------iGPTGsGKTlLAqTLAk~L---nVPFaiADATt------LTEAGYVGEDVENillkLlqaadydV~ 159 (408)
T COG1219 96 SKSNILL-------IGPTGSGKTLLAQTLAKIL---NVPFAIADATT------LTEAGYVGEDVENILLKLLQAADYDVE 159 (408)
T ss_pred eeccEEE-------ECCCCCcHHHHHHHHHHHh---CCCeeeccccc------hhhccccchhHHHHHHHHHHHcccCHH
Confidence 4789999 9998 9999999999774 46644433321 4 588765 77777777765432221
Q ss_pred CCCceEEEecchhHHHhcccccCCCCCCCcchhhhhHHHH
Q 001788 265 NGDGVILDLGDLKWLVEQQVTSFGVPNSGTLQQQQQVLAE 304 (1013)
Q Consensus 265 ~~~~~il~idel~~l~~~~~~~~g~~~~~~~~~~~~~~~~ 304 (1013)
....-|+|||||.-+.....+.+ -++..+.+|+..
T Consensus 160 rAerGIIyIDEIDKIarkSeN~S-----ITRDVSGEGVQQ 194 (408)
T COG1219 160 RAERGIIYIDEIDKIARKSENPS-----ITRDVSGEGVQQ 194 (408)
T ss_pred HHhCCeEEEechhhhhccCCCCC-----cccccCchHHHH
Confidence 23566899999999988764422 233355577764
No 395
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=94.20 E-value=0.033 Score=57.41 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=27.7
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCCCCceeeeC
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGASPIMIPLG 700 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id 700 (1013)
+++|+|+.|+|||++.+.||+.|. .+|+..|
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~---~~F~D~D 34 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALN---LPFIDTD 34 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcC---CCcccch
Confidence 399999999999999999999997 7777665
No 396
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.18 E-value=0.032 Score=53.66 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=20.7
Q ss_pred EEEeccCCCccchHHHHHHHHh
Q 001788 668 LLFMGPDRVGKKKMASALSELV 689 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l 689 (1013)
|++.|++|+|||++|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999986
No 397
>PF13479 AAA_24: AAA domain
Probab=94.16 E-value=0.071 Score=57.10 Aligned_cols=72 Identities=22% Similarity=0.335 Sum_probs=41.0
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCC-CC-cccccccchhhhHHHHH-----HcCCCEEEEEeCCCC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHE-EP-EVRVRGKTALDKIGEAV-----KRNPFSVILLEDIDE 740 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~-~~-~~g~~G~~~~~~L~eal-----~~~p~~VV~lDEIdk 740 (1013)
++++|+||+|||++|..+ ...-|+.++-..... .. ....+.-.....+.+++ ...++.+|+||.|+.
T Consensus 6 ~lIyG~~G~GKTt~a~~~------~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~ 79 (213)
T PF13479_consen 6 ILIYGPPGSGKTTLAASL------PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISW 79 (213)
T ss_pred EEEECCCCCCHHHHHHhC------CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHH
Confidence 999999999999999887 223345555442110 00 00011111223333333 246889999999987
Q ss_pred CCHHH
Q 001788 741 ADMVV 745 (1013)
Q Consensus 741 a~~~v 745 (1013)
+-.-+
T Consensus 80 ~~~~~ 84 (213)
T PF13479_consen 80 LEDMC 84 (213)
T ss_pred HHHHH
Confidence 74433
No 398
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.13 E-value=0.039 Score=54.58 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=25.5
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLG 700 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id 700 (1013)
+++.|++|+|||++|+.||+.+. .+++..|
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~---~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLG---LPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC---Cceeccc
Confidence 78999999999999999999875 5565554
No 399
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=94.13 E-value=0.21 Score=56.03 Aligned_cols=115 Identities=13% Similarity=0.090 Sum_probs=69.2
Q ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCC
Q 001788 622 FKRLLKSLMEKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGP 701 (1013)
Q Consensus 622 l~~L~~~L~~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~ 701 (1013)
+....+.+.+.+.|....+-.++.++.......-.. ....|-|+|.+++|||++++..+. ++|....++ .
T Consensus 156 le~W~~~v~~~~~~n~~~~~~l~~afa~pLL~~l~~------~~~~~hl~G~Ss~GKTt~~~~a~S-v~G~p~~l~---~ 225 (286)
T PF06048_consen 156 LEEWQEMVAALAKGNPRLMLALCAAFAAPLLSLLGV------EGFGFHLYGQSSSGKTTALQLAAS-VWGNPDGLI---R 225 (286)
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhCC------CceEEEEEeCCCCCHHHHHHHhhh-hCcCchhhh---h
Confidence 455556566667787777666666665444432111 112389999999999999887765 444432000 0
Q ss_pred CCCCCCCcccccccchhhhHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHcce
Q 001788 702 RRDHEEPEVRVRGKTALDKIGEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGR 757 (1013)
Q Consensus 702 s~~~~~~~~g~~G~~~~~~L~eal~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~ 757 (1013)
+ +. .+ ...|......+...+++|||+..+++.-...+...|-+|+
T Consensus 226 s---------w~-~T-~n~le~~a~~~nd~~l~lDE~~~~~~~~~~~~iY~l~nG~ 270 (286)
T PF06048_consen 226 S---------WN-ST-DNGLERTAAAHNDLPLVLDELSQADPKDVGSIIYMLANGQ 270 (286)
T ss_pred c---------ch-hh-HHHHHHHHHHcCCcceEehhccccchhHHHHHHHHHhCCC
Confidence 0 11 11 1223333344556789999999999876666666665554
No 400
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.09 E-value=0.042 Score=54.92 Aligned_cols=30 Identities=17% Similarity=0.341 Sum_probs=25.2
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLG 700 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id 700 (1013)
++++|++|+|||++|+.||+.+. .+++..|
T Consensus 2 i~l~G~~GsGKstla~~la~~l~---~~~~~~d 31 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG---LPFVDLD 31 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC---CCEEEch
Confidence 89999999999999999999884 4555444
No 401
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.04 E-value=0.041 Score=56.96 Aligned_cols=31 Identities=16% Similarity=0.262 Sum_probs=25.9
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRR 703 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~ 703 (1013)
+++.||||+|||++|+.||+.+. ++++++++
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~-----~~~is~~d 32 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG-----FTHLSAGD 32 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC-----CeEEECCh
Confidence 89999999999999999999873 45666653
No 402
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.03 E-value=0.054 Score=47.20 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=20.8
Q ss_pred EEEeccCCCccchHHHHHHHHh
Q 001788 668 LLFMGPDRVGKKKMASALSELV 689 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l 689 (1013)
+.+.|++|+|||++++.|++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7889999999999999999987
No 403
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.02 E-value=0.039 Score=55.23 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=20.7
Q ss_pred EEEeccCCCccchHHHHHHHHh
Q 001788 668 LLFMGPDRVGKKKMASALSELV 689 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l 689 (1013)
++|.|++|+|||++|+.|++.+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 7899999999999999999985
No 404
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.98 E-value=0.035 Score=56.43 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.9
Q ss_pred EEEeccCCCccchHHHHHHHHhc
Q 001788 668 LLFMGPDRVGKKKMASALSELVS 690 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~ 690 (1013)
+++.||+|+|||++|+.|++.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 46889999999999999999874
No 405
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=93.97 E-value=0.093 Score=66.42 Aligned_cols=111 Identities=15% Similarity=0.188 Sum_probs=59.1
Q ss_pred EEEeccCCCccchHHH-HHHHHhcCCCCceeeeCCC------------CCCCCCcccccccch----------------h
Q 001788 668 LLFMGPDRVGKKKMAS-ALSELVSGASPIMIPLGPR------------RDHEEPEVRVRGKTA----------------L 718 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr-~LA~~l~~~~~~~i~id~s------------~~~~~~~~g~~G~~~----------------~ 718 (1013)
+++.||||+|||+-.- .|.+..++....++..... +..+......+||.. .
T Consensus 68 vii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~~~s~~Trik~mTd 147 (845)
T COG1643 68 VIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFESKVSPRTRIKVMTD 147 (845)
T ss_pred EEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEeeccCCCCceeEEecc
Confidence 9999999999988653 3344333332233322211 111111122344431 2
Q ss_pred hhHHHHHHc----CCCEEEEEeCCCCC--CHHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCCCcchhhc
Q 001788 719 DKIGEAVKR----NPFSVILLEDIDEA--DMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLKFL 787 (1013)
Q Consensus 719 ~~L~eal~~----~p~~VV~lDEIdka--~~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g~~~~~~~ 787 (1013)
|.|...+.. ..+++|+|||++.= +.++.-.|+.-+...+ .-|++ +|||+.++..+.+..+
T Consensus 148 GiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~r-------r~DLK--iIimSATld~~rfs~~ 213 (845)
T COG1643 148 GILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARR-------RDDLK--LIIMSATLDAERFSAY 213 (845)
T ss_pred HHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhc-------CCCce--EEEEecccCHHHHHHH
Confidence 456655553 45789999999863 3444444443322221 11233 6888888887777654
No 406
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.96 E-value=0.25 Score=54.96 Aligned_cols=107 Identities=16% Similarity=0.193 Sum_probs=64.0
Q ss_pred ccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccc
Q 001788 633 VWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRV 712 (1013)
Q Consensus 633 ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~ 712 (1013)
++=-++|+..|++..+..+. |.|. .|+.|..|+||++++|..|-... ..+..+.++. +|
T Consensus 10 lVlf~~ai~hi~ri~RvL~~------~~Gh-----~LLvG~~GsGr~sl~rLaa~i~~---~~~~~i~~~~-------~y 68 (268)
T PF12780_consen 10 LVLFDEAIEHIARISRVLSQ------PRGH-----ALLVGVGGSGRQSLARLAAFICG---YEVFQIEITK-------GY 68 (268)
T ss_dssp ----HHHHHHHHHHHHHHCS------TTEE-----EEEECTTTSCHHHHHHHHHHHTT---EEEE-TTTST-------TT
T ss_pred eeeHHHHHHHHHHHHHHHcC------CCCC-----eEEecCCCccHHHHHHHHHHHhc---cceEEEEeeC-------Cc
Confidence 44556677776665543221 1123 99999999999999995554432 4555555542 23
Q ss_pred cccchhhhHHHHHH----cCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEec
Q 001788 713 RGKTALDKIGEAVK----RNPFSVILLEDIDEADMVVRGNIKRAMERGRLVD 760 (1013)
Q Consensus 713 ~G~~~~~~L~eal~----~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d 760 (1013)
.-.+....|-.++. ++...|++|++-+-.+..+...+-.+|.+|.+.+
T Consensus 69 ~~~~f~~dLk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~ 120 (268)
T PF12780_consen 69 SIKDFKEDLKKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPN 120 (268)
T ss_dssp HHHHHHHHHHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TT
T ss_pred CHHHHHHHHHHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCC
Confidence 22222333333322 3445788899988888888999999999998875
No 407
>PRK13949 shikimate kinase; Provisional
Probab=93.91 E-value=0.044 Score=56.57 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=26.1
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLG 700 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id 700 (1013)
++++|++|+|||++++.||+.+. .+++..|
T Consensus 4 I~liG~~GsGKstl~~~La~~l~---~~~id~D 33 (169)
T PRK13949 4 IFLVGYMGAGKTTLGKALARELG---LSFIDLD 33 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC---CCeeccc
Confidence 89999999999999999999985 5666555
No 408
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=93.88 E-value=0.095 Score=56.29 Aligned_cols=84 Identities=11% Similarity=-0.012 Sum_probs=43.9
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCC--cccccccchhhhHHHHHHcCCCEEEEEeCCCCCCHHH
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEP--EVRVRGKTALDKIGEAVKRNPFSVILLEDIDEADMVV 745 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~--~~g~~G~~~~~~L~eal~~~p~~VV~lDEIdka~~~v 745 (1013)
+++.|++|+|||++.+.+.... ......+-....+.... .....+......+.......++..++|||+-.+|+..
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~~~~~~~~~~~liiDE~~~~~~g~ 78 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR--LVVTVISPTIELYTEWLPDPPSKSVRTVDSFLKALVKPKSYDTLIIDEAQLLPPGY 78 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc--cccccccccceeccccccccCCccccEEeEhhhcccccCcCCEEEEeccccCChHH
Confidence 4689999999999999988873 00000000001111110 0011111111111111122346899999999999987
Q ss_pred HHHHHHHH
Q 001788 746 RGNIKRAM 753 (1013)
Q Consensus 746 q~~LL~~l 753 (1013)
...|+...
T Consensus 79 l~~l~~~~ 86 (234)
T PF01443_consen 79 LLLLLSLS 86 (234)
T ss_pred HHHHHhhc
Confidence 77755544
No 409
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.83 E-value=0.16 Score=60.66 Aligned_cols=75 Identities=12% Similarity=0.229 Sum_probs=46.8
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCC---------CC--c-ccccccchhhhHHHHHHcCCCEEEE
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHE---------EP--E-VRVRGKTALDKIGEAVKRNPFSVIL 734 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~---------~~--~-~g~~G~~~~~~L~eal~~~p~~VV~ 734 (1013)
.+++.|+||+|||+++..++..+.......+.++..+... +. . --+........+.+.+++....+|+
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~~lVV 161 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKPDLVV 161 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCCCEEE
Confidence 5899999999999999999887753334555555432110 00 0 0011112234566666666668999
Q ss_pred EeCCCCC
Q 001788 735 LEDIDEA 741 (1013)
Q Consensus 735 lDEIdka 741 (1013)
||+|..+
T Consensus 162 IDSIq~l 168 (446)
T PRK11823 162 IDSIQTM 168 (446)
T ss_pred Eechhhh
Confidence 9999754
No 410
>PRK13764 ATPase; Provisional
Probab=93.82 E-value=0.19 Score=61.56 Aligned_cols=78 Identities=17% Similarity=0.300 Sum_probs=46.0
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeC-CCCCCCCC-ccccc--ccchhhhHHH-HHHcCCCEEEEEeCCCCCC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLG-PRRDHEEP-EVRVR--GKTALDKIGE-AVKRNPFSVILLEDIDEAD 742 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id-~s~~~~~~-~~g~~--G~~~~~~L~e-al~~~p~~VV~lDEIdka~ 742 (1013)
+|++||||+|||+++++|++.+......+..+. ..++.... ...|. +.+ ...+.+ .++..| .+|++||+-..
T Consensus 260 ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~~~~-~~~~~~~lLR~rP-D~IivGEiRd~- 336 (602)
T PRK13764 260 ILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKLEGS-MEETADILLLVRP-DYTIYDEMRKT- 336 (602)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeecccc-HHHHHHHHHhhCC-CEEEECCCCCH-
Confidence 999999999999999999998865444333432 22222110 01111 111 122233 355666 89999999853
Q ss_pred HHHHHHH
Q 001788 743 MVVRGNI 749 (1013)
Q Consensus 743 ~~vq~~L 749 (1013)
+....+
T Consensus 337 -Et~~~~ 342 (602)
T PRK13764 337 -EDFKIF 342 (602)
T ss_pred -HHHHHH
Confidence 444444
No 411
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.81 E-value=0.095 Score=58.09 Aligned_cols=89 Identities=21% Similarity=0.379 Sum_probs=57.9
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCC-CceeeeC-CCCCCCCCccc-----cccc---chhhhHHHHHHcCCCEEEEEeC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGAS-PIMIPLG-PRRDHEEPEVR-----VRGK---TALDKIGEAVKRNPFSVILLED 737 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~-~~~i~id-~s~~~~~~~~g-----~~G~---~~~~~L~eal~~~p~~VV~lDE 737 (1013)
+|.+||+|+|||+..-++-.++.... ..++.+. .=+|...+... -+|. ++...|-.++++.| +|||+=|
T Consensus 128 ILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDP-DVIlvGE 206 (353)
T COG2805 128 ILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDP-DVILVGE 206 (353)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCC-CEEEEec
Confidence 99999999999988888877776442 2223322 22222111100 1222 23445777888888 8999988
Q ss_pred CCCCCHHHHHHHHHHHHcceEe
Q 001788 738 IDEADMVVRGNIKRAMERGRLV 759 (1013)
Q Consensus 738 Idka~~~vq~~LL~~le~G~l~ 759 (1013)
+-. .+....-|.+-|+|.+.
T Consensus 207 mRD--~ETi~~ALtAAETGHLV 226 (353)
T COG2805 207 MRD--LETIRLALTAAETGHLV 226 (353)
T ss_pred ccc--HHHHHHHHHHHhcCCEE
Confidence 764 57788889999999864
No 412
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.74 E-value=0.21 Score=54.21 Aligned_cols=27 Identities=19% Similarity=0.423 Sum_probs=23.6
Q ss_pred ceEEEeccCCCccchHHHHHHHHhcCC
Q 001788 666 MWLLFMGPDRVGKKKMASALSELVSGA 692 (1013)
Q Consensus 666 ~~lLf~Gp~GvGKT~lAr~LA~~l~~~ 692 (1013)
-++.+.||+|||||++-+.||-....+
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~~p~ 56 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLEKPT 56 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 368999999999999999999877544
No 413
>PRK05541 adenylylsulfate kinase; Provisional
Probab=93.73 E-value=0.059 Score=55.61 Aligned_cols=36 Identities=25% Similarity=0.191 Sum_probs=28.0
Q ss_pred ceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCC
Q 001788 666 MWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGP 701 (1013)
Q Consensus 666 ~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~ 701 (1013)
..++|.|++|+|||++|+.|++.+.......+.+|.
T Consensus 8 ~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~ 43 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDG 43 (176)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEec
Confidence 359999999999999999999998644334455553
No 414
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.64 E-value=0.32 Score=55.76 Aligned_cols=108 Identities=14% Similarity=0.132 Sum_probs=69.3
Q ss_pred CCCcccccCCCcccCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-cccchhhhHHHHHHHHHHHHhhcCCCC
Q 001788 191 YMNPRLQQAGGVCGGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-FTCDKAGIVSKLKDLGALIETKFGNGD 267 (1013)
Q Consensus 191 ~~np~l~~~~~~~vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~~~~rge~e~r~~~l~~~~~~~~~~~~ 267 (1013)
+.|.++ -|+| |||.++++||++ .|...--+--+ ++-.-.+--.+|.+|++-.+.+ ..
T Consensus 384 fRNilf-------yGPPGTGKTm~ArelAr~----------SGlDYA~mTGGDVAPlG~qaVTkiH~lFDWakkS---~r 443 (630)
T KOG0742|consen 384 FRNILF-------YGPPGTGKTMFARELARH----------SGLDYAIMTGGDVAPLGAQAVTKIHKLFDWAKKS---RR 443 (630)
T ss_pred hhheee-------eCCCCCCchHHHHHHHhh----------cCCceehhcCCCccccchHHHHHHHHHHHHHhhc---cc
Confidence 557788 9999 999999999987 44332222222 3322334456899999999986 89
Q ss_pred ceEEEecchhHHHhcccccCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEecCH
Q 001788 268 GVILDLGDLKWLVEQQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATC 331 (1013)
Q Consensus 268 ~~il~idel~~l~~~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~IgatT~ 331 (1013)
|++|||||...++-.... .+ ..+... +-+-.+|=+-++-+.++.++-||+.
T Consensus 444 GLllFIDEADAFLceRnk-ty---------mSEaqR---saLNAlLfRTGdqSrdivLvlAtNr 494 (630)
T KOG0742|consen 444 GLLLFIDEADAFLCERNK-TY---------MSEAQR---SALNALLFRTGDQSRDIVLVLATNR 494 (630)
T ss_pred ceEEEehhhHHHHHHhch-hh---------hcHHHH---HHHHHHHHHhcccccceEEEeccCC
Confidence 999999999988876532 11 011122 1233345444433557777777754
No 415
>PRK14532 adenylate kinase; Provisional
Probab=93.61 E-value=0.054 Score=56.51 Aligned_cols=30 Identities=33% Similarity=0.512 Sum_probs=24.8
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPR 702 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s 702 (1013)
++|.||||+|||++|+.||+.+. +.++++.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g-----~~~is~~ 32 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERG-----MVQLSTG 32 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC-----CeEEeCc
Confidence 89999999999999999999763 4555554
No 416
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.61 E-value=0.36 Score=56.34 Aligned_cols=122 Identities=13% Similarity=0.241 Sum_probs=69.1
Q ss_pred cCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-cc--------------c----chh-hhHHHHHHHHHHHHh
Q 001788 204 GGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-FT--------------C----DKA-GIVSKLKDLGALIET 261 (1013)
Q Consensus 204 vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~~--------------~----~rg-e~e~r~~~l~~~~~~ 261 (1013)
.|++ |||++++.+++.+.... .+..++.++.. .. + .+| .+++-+..+.+.+++
T Consensus 61 ~G~~GtGKT~l~~~v~~~l~~~~-----~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 135 (394)
T PRK00411 61 YGPPGTGKTTTVKKVFEELEEIA-----VKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDE 135 (394)
T ss_pred ECCCCCCHHHHHHHHHHHHHHhc-----CCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHh
Confidence 9999 99999999999886542 24556666543 11 1 111 234444445555544
Q ss_pred hcCCCCceEEEecchhHHHhcccccCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCceEEEEecCHHHHHHhhhcC
Q 001788 262 KFGNGDGVILDLGDLKWLVEQQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATCETYLRCQVYH 341 (1013)
Q Consensus 262 ~~~~~~~~il~idel~~l~~~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~~g~~~~IgatT~~~Y~k~~~~~ 341 (1013)
. +.++||+|||++.+..... . ... ..+.+++...- ..++-+|++++....... .+
T Consensus 136 ~---~~~~viviDE~d~l~~~~~--------------~-~~l---~~l~~~~~~~~--~~~v~vI~i~~~~~~~~~--l~ 190 (394)
T PRK00411 136 R---DRVLIVALDDINYLFEKEG--------------N-DVL---YSLLRAHEEYP--GARIGVIGISSDLTFLYI--LD 190 (394)
T ss_pred c---CCEEEEEECCHhHhhccCC--------------c-hHH---HHHHHhhhccC--CCeEEEEEEECCcchhhh--cC
Confidence 2 5679999999999983211 0 111 13444433222 237888998876544443 24
Q ss_pred CCCCCCCCC--eeeeccC
Q 001788 342 PSMENDWDL--QAVPIAA 357 (1013)
Q Consensus 342 ~ale~~~rf--q~v~v~e 357 (1013)
|.+ ..+| +.|.++.
T Consensus 191 ~~~--~s~~~~~~i~f~p 206 (394)
T PRK00411 191 PRV--KSVFRPEEIYFPP 206 (394)
T ss_pred HHH--HhcCCcceeecCC
Confidence 555 3344 3455554
No 417
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=93.60 E-value=0.18 Score=56.17 Aligned_cols=85 Identities=13% Similarity=0.142 Sum_probs=47.8
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCC-------ceeeeCC-CCCC---CCCcccccc--------cchhhhHHHHHHcC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASP-------IMIPLGP-RRDH---EEPEVRVRG--------KTALDKIGEAVKRN 728 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~-------~~i~id~-s~~~---~~~~~g~~G--------~~~~~~L~eal~~~ 728 (1013)
++|.||+|+|||++.+.|+..+..... .+..+|. .+.. ...+...+| ......+..+++..
T Consensus 114 ~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~~~ 193 (270)
T TIGR02858 114 TLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIRSM 193 (270)
T ss_pred EEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHHhC
Confidence 899999999999999999998864321 1111220 0100 000000111 11122355566655
Q ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHH
Q 001788 729 PFSVILLEDIDEADMVVRGNIKRAME 754 (1013)
Q Consensus 729 p~~VV~lDEIdka~~~vq~~LL~~le 754 (1013)
...||++||+.. .+....+++.+.
T Consensus 194 ~P~villDE~~~--~e~~~~l~~~~~ 217 (270)
T TIGR02858 194 SPDVIVVDEIGR--EEDVEALLEALH 217 (270)
T ss_pred CCCEEEEeCCCc--HHHHHHHHHHHh
Confidence 559999999864 344455556554
No 418
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.54 E-value=0.22 Score=50.38 Aligned_cols=87 Identities=17% Similarity=0.271 Sum_probs=53.9
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCC------Cccccc-----ccchhhhHHHHHHcCCCEEEEE
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEE------PEVRVR-----GKTALDKIGEAVKRNPFSVILL 735 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~------~~~g~~-----G~~~~~~L~eal~~~p~~VV~l 735 (1013)
.+.+.||+|+|||++.++|+..+... .--+.++-...... ...+|. |....-.+..++-..| .++++
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~~~~~-~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~-~i~il 104 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLLKPT-SGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNP-DLLLL 104 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC-ccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCC-CEEEE
Confidence 48999999999999999998876422 22234443211100 001121 1111123455555555 89999
Q ss_pred eCCC-CCCHHHHHHHHHHHHc
Q 001788 736 EDID-EADMVVRGNIKRAMER 755 (1013)
Q Consensus 736 DEId-ka~~~vq~~LL~~le~ 755 (1013)
||.. .+|......|.+++..
T Consensus 105 DEp~~~lD~~~~~~l~~~l~~ 125 (157)
T cd00267 105 DEPTSGLDPASRERLLELLRE 125 (157)
T ss_pred eCCCcCCCHHHHHHHHHHHHH
Confidence 9996 6788888888888863
No 419
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.52 E-value=0.16 Score=52.91 Aligned_cols=87 Identities=20% Similarity=0.208 Sum_probs=53.8
Q ss_pred ceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCC--CCCCCccccc-ccchhhhHHHHHHcCCCEEEEEeCCC-CC
Q 001788 666 MWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRR--DHEEPEVRVR-GKTALDKIGEAVKRNPFSVILLEDID-EA 741 (1013)
Q Consensus 666 ~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~--~~~~~~~g~~-G~~~~~~L~eal~~~p~~VV~lDEId-ka 741 (1013)
.++.+.||+|+|||++.+.|+..+..... -|.++-.. |.... ..+- |....-.+..++-..| .++++||-- .+
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~q~-~~LSgGq~qrv~laral~~~p-~lllLDEPts~L 102 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGD-NDEWDGITPVYKPQY-IDLSGGELQRVAIAAALLRNA-TFYLFDEPSAYL 102 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCc-EEEECCEEEEEEccc-CCCCHHHHHHHHHHHHHhcCC-CEEEEECCcccC
Confidence 35899999999999999999987643322 23333210 00000 0011 1111223566666666 899999985 67
Q ss_pred CHHHHHHHHHHHHc
Q 001788 742 DMVVRGNIKRAMER 755 (1013)
Q Consensus 742 ~~~vq~~LL~~le~ 755 (1013)
++..+..+++++.+
T Consensus 103 D~~~~~~l~~~l~~ 116 (177)
T cd03222 103 DIEQRLNAARAIRR 116 (177)
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888887753
No 420
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=93.50 E-value=0.23 Score=62.32 Aligned_cols=120 Identities=14% Similarity=0.138 Sum_probs=71.1
Q ss_pred ccCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-ccc-----------------chh-hhHHHHHHHHHHHHh
Q 001788 203 CGGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-FTC-----------------DKA-GIVSKLKDLGALIET 261 (1013)
Q Consensus 203 ~vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~~~-----------------~rg-e~e~r~~~l~~~~~~ 261 (1013)
|.|.| |||++|+.+++.+..----..+..+.++.++.. +.. .+| ...+-|..+++.+.+
T Consensus 786 IyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k 865 (1164)
T PTZ00112 786 ISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKK 865 (1164)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhc
Confidence 39999 999999999998854210112334666666653 211 111 123345556665533
Q ss_pred hcCCCCceEEEecchhHHHhcccccCCCCCCCcchhhhhHHHHHHHHHHHHHh-hhcCCCCceEEEEecCHHHHHHhhhc
Q 001788 262 KFGNGDGVILDLGDLKWLVEQQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVA-RFGGGGGRLWLIGTATCETYLRCQVY 340 (1013)
Q Consensus 262 ~~~~~~~~il~idel~~l~~~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk-~~~~~~g~~~~IgatT~~~Y~k~~~~ 340 (1013)
. .....||+|||||.|+.... . .+-+|++ +.. ..++|-+||+++.-.+... .
T Consensus 866 ~--~r~v~IIILDEID~L~kK~Q-------------------D---VLYnLFR~~~~-s~SKLiLIGISNdlDLper--L 918 (1164)
T PTZ00112 866 D--NRNVSILIIDEIDYLITKTQ-------------------K---VLFTLFDWPTK-INSKLVLIAISNTMDLPER--L 918 (1164)
T ss_pred c--cccceEEEeehHhhhCccHH-------------------H---HHHHHHHHhhc-cCCeEEEEEecCchhcchh--h
Confidence 2 13456999999999986421 1 2344444 233 4678999999986555443 2
Q ss_pred CCCCCCCCCCe
Q 001788 341 HPSMENDWDLQ 351 (1013)
Q Consensus 341 ~~ale~~~rfq 351 (1013)
+|.+ .-||.
T Consensus 919 dPRL--RSRLg 927 (1164)
T PTZ00112 919 IPRC--RSRLA 927 (1164)
T ss_pred hhhh--hhccc
Confidence 5677 55554
No 421
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=93.43 E-value=0.11 Score=55.04 Aligned_cols=38 Identities=13% Similarity=0.181 Sum_probs=29.8
Q ss_pred ceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCC
Q 001788 666 MWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRR 703 (1013)
Q Consensus 666 ~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~ 703 (1013)
..++++||||+|||.++..++..........+.++..+
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 45899999999999999999877655545666666653
No 422
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.39 E-value=0.057 Score=56.29 Aligned_cols=30 Identities=27% Similarity=0.467 Sum_probs=25.6
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPR 702 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s 702 (1013)
++|.||||+||+++|+.||+.+ ++.++|..
T Consensus 3 iiilG~pGaGK~T~A~~La~~~-----~i~hlstg 32 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKL-----GLPHLDTG 32 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHh-----CCcEEcHh
Confidence 8999999999999999999984 46666643
No 423
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.39 E-value=0.057 Score=55.00 Aligned_cols=91 Identities=11% Similarity=0.111 Sum_probs=55.5
Q ss_pred ceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcccccccchh---------hhHHHHHHcCCCEEEEEe
Q 001788 666 MWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGKTAL---------DKIGEAVKRNPFSVILLE 736 (1013)
Q Consensus 666 ~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~G~~~~---------~~L~eal~~~p~~VV~lD 736 (1013)
.++.|+|.+|+|||++|++|.+.|+....+.+.+|....-.+...+ .|++.. +.+...+..+. .+++..
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~d-l~fs~~dR~e~~rr~~~~A~ll~~~G-~ivIva 80 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNAD-LGFSKEDREENIRRIAEVAKLLADQG-IIVIVA 80 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT---SSHHHHHHHHHHHHHHHHHHHHTT-SEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCC-CCCCHHHHHHHHHHHHHHHHHHHhCC-CeEEEe
Confidence 3589999999999999999999999877888888866543322111 122221 22333344433 455555
Q ss_pred CCCCCCHHHHHHHHHHHHcceEe
Q 001788 737 DIDEADMVVRGNIKRAMERGRLV 759 (1013)
Q Consensus 737 EIdka~~~vq~~LL~~le~G~l~ 759 (1013)
+--...+......+.+.++.|.
T Consensus 81 -~isp~~~~R~~~R~~~~~~~f~ 102 (156)
T PF01583_consen 81 -FISPYREDREWARELIPNERFI 102 (156)
T ss_dssp -----SHHHHHHHHHHHHTTEEE
T ss_pred -eccCchHHHHHHHHhCCcCceE
Confidence 3334466777777788765554
No 424
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=93.39 E-value=0.28 Score=53.42 Aligned_cols=62 Identities=23% Similarity=0.283 Sum_probs=49.9
Q ss_pred CCCcccccCCCcccCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-cccchhhhHHHHHHHHHHHHhhcCCCC
Q 001788 191 YMNPRLQQAGGVCGGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-FTCDKAGIVSKLKDLGALIETKFGNGD 267 (1013)
Q Consensus 191 ~~np~l~~~~~~~vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~~~~rge~e~r~~~l~~~~~~~~~~~~ 267 (1013)
-||.+| -|+. ||+.+|+++..+... +|+++|.++.. +. -|.+|++.++.. .-
T Consensus 52 annvLL-------~G~rGtGKSSlVkall~~y~~-------~GLRlIev~k~~L~--------~l~~l~~~l~~~---~~ 106 (249)
T PF05673_consen 52 ANNVLL-------WGARGTGKSSLVKALLNEYAD-------QGLRLIEVSKEDLG--------DLPELLDLLRDR---PY 106 (249)
T ss_pred CcceEE-------ecCCCCCHHHHHHHHHHHHhh-------cCceEEEECHHHhc--------cHHHHHHHHhcC---CC
Confidence 358899 9999 999999999988665 35889999866 42 366777777764 67
Q ss_pred ceEEEecchh
Q 001788 268 GVILDLGDLK 277 (1013)
Q Consensus 268 ~~il~idel~ 277 (1013)
+.|||+|||-
T Consensus 107 kFIlf~DDLs 116 (249)
T PF05673_consen 107 KFILFCDDLS 116 (249)
T ss_pred CEEEEecCCC
Confidence 9999999976
No 425
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=93.36 E-value=0.059 Score=59.21 Aligned_cols=63 Identities=14% Similarity=0.171 Sum_probs=42.9
Q ss_pred CcccccCCCcccCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccccccchhhhHHHHHHHHHHHHhhcCCCCceE
Q 001788 193 NPRLQQAGGVCGGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKDFTCDKAGIVSKLKDLGALIETKFGNGDGVI 270 (1013)
Q Consensus 193 np~l~~~~~~~vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~~~~rge~e~r~~~l~~~~~~~~~~~~~~i 270 (1013)
..+| .|+| |||.++.=+|..+..+ +-. .-|-.=+|-.+|...+-.. .++=|
T Consensus 54 HvLl-------~GPPGlGKTTLA~IIA~Emgvn----------~k~-------tsGp~leK~gDlaaiLt~L---e~~DV 106 (332)
T COG2255 54 HVLL-------FGPPGLGKTTLAHIIANELGVN----------LKI-------TSGPALEKPGDLAAILTNL---EEGDV 106 (332)
T ss_pred eEEe-------eCCCCCcHHHHHHHHHHHhcCC----------eEe-------cccccccChhhHHHHHhcC---CcCCe
Confidence 4677 9999 9998877776653322 222 2233334666777777665 68999
Q ss_pred EEecchhHHHhc
Q 001788 271 LDLGDLKWLVEQ 282 (1013)
Q Consensus 271 l~idel~~l~~~ 282 (1013)
|||||||.|-..
T Consensus 107 LFIDEIHrl~~~ 118 (332)
T COG2255 107 LFIDEIHRLSPA 118 (332)
T ss_pred EEEehhhhcChh
Confidence 999999988653
No 426
>PRK14530 adenylate kinase; Provisional
Probab=93.33 E-value=0.064 Score=57.41 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.7
Q ss_pred EEEeccCCCccchHHHHHHHHhc
Q 001788 668 LLFMGPDRVGKKKMASALSELVS 690 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~ 690 (1013)
++|.||||+|||++|+.||+.+.
T Consensus 6 I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 6 ILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999999884
No 427
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.32 E-value=0.11 Score=60.25 Aligned_cols=87 Identities=16% Similarity=0.232 Sum_probs=47.3
Q ss_pred eEEEeccCCCccch-HHHHHHHHhc-CC--CCceeeeCCCCCCCCCccccccc-----------chhhhHHHHHHc-CCC
Q 001788 667 WLLFMGPDRVGKKK-MASALSELVS-GA--SPIMIPLGPRRDHEEPEVRVRGK-----------TALDKIGEAVKR-NPF 730 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~-lAr~LA~~l~-~~--~~~~i~id~s~~~~~~~~g~~G~-----------~~~~~L~eal~~-~p~ 730 (1013)
+|.|.||+|||||+ +|+.-|+++. .. ...+|..| .|-.|+...+..| .....|.+++.. ..+
T Consensus 205 vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtD--tYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 205 VIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTD--TYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEec--cchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 49999999999975 5555555551 22 23455555 3433221111111 012234444433 334
Q ss_pred EEEEEeCCCCCCHH--HHHHHHHHHHc
Q 001788 731 SVILLEDIDEADMV--VRGNIKRAMER 755 (1013)
Q Consensus 731 ~VV~lDEIdka~~~--vq~~LL~~le~ 755 (1013)
.+||+|=+.+-+.+ ...-|-.++.-
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~ 309 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDV 309 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhc
Confidence 79999999987654 34455555543
No 428
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=93.32 E-value=0.28 Score=47.35 Aligned_cols=98 Identities=10% Similarity=0.067 Sum_probs=56.7
Q ss_pred cCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-cc-cchhhhHHH--HHHHHHHHHhhcCCCCceEEEecchh
Q 001788 204 GGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-FT-CDKAGIVSK--LKDLGALIETKFGNGDGVILDLGDLK 277 (1013)
Q Consensus 204 vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~~-~~rge~e~r--~~~l~~~~~~~~~~~~~~il~idel~ 277 (1013)
+|++ |||.+++.++..+.. .+.+++.++.. +. ......... ........... ..+.+|+|||++
T Consensus 25 ~G~~G~GKT~l~~~i~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~lilDe~~ 94 (151)
T cd00009 25 YGPPGTGKTTLARAIANELFR-------PGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEK---AKPGVLFIDEID 94 (151)
T ss_pred ECCCCCCHHHHHHHHHHHhhc-------CCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhcc---CCCeEEEEeChh
Confidence 9999 999999999998762 34567777766 32 111111111 01111111111 568899999999
Q ss_pred HHHhcccccCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcCC---CCceEEEEecCHHH
Q 001788 278 WLVEQQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGG---GGRLWLIGTATCET 333 (1013)
Q Consensus 278 ~l~~~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~~---~g~~~~IgatT~~~ 333 (1013)
.+-... .. ++-.++...... .+++.+|++++...
T Consensus 95 ~~~~~~------------------~~----~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 95 SLSRGA------------------QN----ALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hhhHHH------------------HH----HHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 872211 11 344555544311 36899999887644
No 429
>PRK13948 shikimate kinase; Provisional
Probab=93.29 E-value=0.082 Score=55.33 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=27.4
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCCCCceeeeC
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGASPIMIPLG 700 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id 700 (1013)
.++|.|.+|+|||++++.||+.+. .+|+..|
T Consensus 12 ~I~LiG~~GsGKSTvg~~La~~lg---~~~iD~D 42 (182)
T PRK13948 12 WVALAGFMGTGKSRIGWELSRALM---LHFIDTD 42 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC---CCEEECC
Confidence 499999999999999999999885 6777666
No 430
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=93.28 E-value=0.23 Score=63.22 Aligned_cols=96 Identities=14% Similarity=0.176 Sum_probs=58.2
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCCcc-----cccc-cchhhhH---H-HHHHcCCCEEEEEe
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEV-----RVRG-KTALDKI---G-EAVKRNPFSVILLE 736 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~-----g~~G-~~~~~~L---~-eal~~~p~~VV~lD 736 (1013)
|+++.||+|+|||..|...++.+. ..++.+|.+..-.+.+. ...+ +...+.. . ..-.+..+-||+||
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g---~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~d 435 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELG---FKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMD 435 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcc---cceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEe
Confidence 689999999999999999999886 67788887643211000 0000 0001111 0 00112445699999
Q ss_pred CCCCCCH---HHHHHHHHHHHcceEecCCCeEeecCceEEEEecC
Q 001788 737 DIDEADM---VVRGNIKRAMERGRLVDSYGREISLGNVIFILTAD 778 (1013)
Q Consensus 737 EIdka~~---~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN 778 (1013)
|+|=+.. .....|-+++..-... +|+|+|
T Consensus 436 evD~~~~~dRg~v~~l~~l~~ks~~P-------------iv~~cn 467 (871)
T KOG1968|consen 436 EVDGMFGEDRGGVSKLSSLCKKSSRP-------------LVCTCN 467 (871)
T ss_pred ccccccchhhhhHHHHHHHHHhccCC-------------eEEEec
Confidence 9998866 4555666666522211 788887
No 431
>PRK08233 hypothetical protein; Provisional
Probab=93.27 E-value=0.086 Score=54.28 Aligned_cols=35 Identities=9% Similarity=0.091 Sum_probs=27.1
Q ss_pred ceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCC
Q 001788 666 MWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPR 702 (1013)
Q Consensus 666 ~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s 702 (1013)
..+.+.|++|+|||++|+.|++.+.. ..++.+|.-
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~--~~~~~~d~~ 38 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKN--SKALYFDRY 38 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCC--CceEEECCE
Confidence 35889999999999999999998742 244555543
No 432
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=93.23 E-value=0.15 Score=64.39 Aligned_cols=87 Identities=13% Similarity=0.124 Sum_probs=49.3
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCC--CceeeeCCCCC-----C--CCCcc----cccccchhhhHHHHH-HcCCCEEE
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGAS--PIMIPLGPRRD-----H--EEPEV----RVRGKTALDKIGEAV-KRNPFSVI 733 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~--~~~i~id~s~~-----~--~~~~~----g~~G~~~~~~L~eal-~~~p~~VV 733 (1013)
+++.|++|||||+++++|.+.+.... ..++-+..+.- . .+.+. .+.+........... ...+..+|
T Consensus 341 ~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~ll 420 (720)
T TIGR01448 341 VILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDLL 420 (720)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCEE
Confidence 89999999999999999988775432 22222221100 0 00000 011110000000000 11345799
Q ss_pred EEeCCCCCCHHHHHHHHHHHH
Q 001788 734 LLEDIDEADMVVRGNIKRAME 754 (1013)
Q Consensus 734 ~lDEIdka~~~vq~~LL~~le 754 (1013)
++||+..++......|++.+.
T Consensus 421 IvDEaSMvd~~~~~~Ll~~~~ 441 (720)
T TIGR01448 421 IVDESSMMDTWLALSLLAALP 441 (720)
T ss_pred EEeccccCCHHHHHHHHHhCC
Confidence 999999999999888888764
No 433
>PRK06762 hypothetical protein; Provisional
Probab=93.23 E-value=0.059 Score=54.93 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=22.1
Q ss_pred ceEEEeccCCCccchHHHHHHHHh
Q 001788 666 MWLLFMGPDRVGKKKMASALSELV 689 (1013)
Q Consensus 666 ~~lLf~Gp~GvGKT~lAr~LA~~l 689 (1013)
+.++|.|++|+|||++|+.|++.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999988
No 434
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.22 E-value=0.074 Score=53.64 Aligned_cols=34 Identities=24% Similarity=0.247 Sum_probs=26.8
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGP 701 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~ 701 (1013)
++|.|++|+|||++|+.|++.+.......+.++.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~ 35 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDG 35 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 7899999999999999999998643334455553
No 435
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.12 E-value=0.082 Score=53.63 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=22.3
Q ss_pred eEEEeccCCCccchHHHHHHHHhc
Q 001788 667 WLLFMGPDRVGKKKMASALSELVS 690 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~ 690 (1013)
.+.+.||||+|||++|+.||+.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 378999999999999999999986
No 436
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=93.11 E-value=0.083 Score=54.15 Aligned_cols=30 Identities=20% Similarity=0.372 Sum_probs=26.0
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLG 700 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id 700 (1013)
++|+|++|+|||++|+.||+.+. .+|+..|
T Consensus 5 i~~~G~~GsGKst~~~~la~~lg---~~~~d~D 34 (171)
T PRK03731 5 LFLVGARGCGKTTVGMALAQALG---YRFVDTD 34 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC---CCEEEcc
Confidence 89999999999999999999885 5666555
No 437
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.09 E-value=0.3 Score=52.87 Aligned_cols=34 Identities=26% Similarity=0.216 Sum_probs=25.5
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCCCCceeeeCC
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGASPIMIPLGP 701 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~ 701 (1013)
.+-+.|++|+|||+++|+|+-....+ .--|.++.
T Consensus 35 ~lgivGeSGsGKSTL~r~l~Gl~~p~-~G~I~~~G 68 (252)
T COG1124 35 TLGIVGESGSGKSTLARLLAGLEKPS-SGSILLDG 68 (252)
T ss_pred EEEEEcCCCCCHHHHHHHHhcccCCC-CceEEECC
Confidence 38999999999999999999876433 22344444
No 438
>PRK06547 hypothetical protein; Provisional
Probab=93.06 E-value=0.084 Score=54.71 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.5
Q ss_pred eEEEeccCCCccchHHHHHHHHhc
Q 001788 667 WLLFMGPDRVGKKKMASALSELVS 690 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~ 690 (1013)
.+++.|++|+|||++|+.|++.+.
T Consensus 17 ~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 17 TVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 388889999999999999999853
No 439
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.03 E-value=0.099 Score=53.91 Aligned_cols=36 Identities=28% Similarity=0.268 Sum_probs=28.4
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCC
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPR 702 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s 702 (1013)
.+.|.|++|+|||++|+.|+..+......+..+|..
T Consensus 6 ~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D 41 (175)
T PRK00889 6 TVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGD 41 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence 589999999999999999999986443345555554
No 440
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.03 E-value=0.076 Score=55.35 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=21.3
Q ss_pred EEEeccCCCccchHHHHHHHHhc
Q 001788 668 LLFMGPDRVGKKKMASALSELVS 690 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~ 690 (1013)
++++||||+|||++|+.||+.+.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~ 24 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG 24 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999863
No 441
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=93.03 E-value=0.2 Score=63.96 Aligned_cols=114 Identities=7% Similarity=0.075 Sum_probs=72.7
Q ss_pred cCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-c------c----cchhhhHHHHHHHHHHHHhhcCCCCceE
Q 001788 204 GGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-F------T----CDKAGIVSKLKDLGALIETKFGNGDGVI 270 (1013)
Q Consensus 204 vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~------~----~~rge~e~r~~~l~~~~~~~~~~~~~~i 270 (1013)
+|+| |||.+++.+|..+. ..++.++++ + . .|.|....++.+.+..+.. ..+ |
T Consensus 353 ~GppG~GKT~lAk~iA~~l~----------~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~----~~~-v 417 (775)
T TIGR00763 353 VGPPGVGKTSLGKSIAKALN----------RKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKT----KNP-L 417 (775)
T ss_pred ECCCCCCHHHHHHHHHHHhc----------CCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCc----CCC-E
Confidence 9999 99999999998862 335555443 2 1 2667777777766665543 234 7
Q ss_pred EEecchhHHHhcccccCCCCCCCcchhhhhHHHHHHHHHHHHHhh---------hcC---CCCceEEEEecCHHHHHHhh
Q 001788 271 LDLGDLKWLVEQQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVAR---------FGG---GGGRLWLIGTATCETYLRCQ 338 (1013)
Q Consensus 271 l~idel~~l~~~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk~---------~~~---~~g~~~~IgatT~~~Y~k~~ 338 (1013)
|+||||+.+..... | ++.. -+-.+|.| +++ .-+.+.+|+||+.-.
T Consensus 418 illDEidk~~~~~~---~-----------~~~~----aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~----- 474 (775)
T TIGR00763 418 FLLDEIDKIGSSFR---G-----------DPAS----ALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSID----- 474 (775)
T ss_pred EEEechhhcCCccC---C-----------CHHH----HHHHhcCHHhcCccccccCCceeccCCEEEEEecCCch-----
Confidence 89999999875321 1 1211 23444443 210 025788898887622
Q ss_pred hcCCCCCCCCCCeeeeccC
Q 001788 339 VYHPSMENDWDLQAVPIAA 357 (1013)
Q Consensus 339 ~~~~ale~~~rfq~v~v~e 357 (1013)
.-+|+| -.||+.|.++.
T Consensus 475 ~i~~~L--~~R~~vi~~~~ 491 (775)
T TIGR00763 475 TIPRPL--LDRMEVIELSG 491 (775)
T ss_pred hCCHHH--hCCeeEEecCC
Confidence 357999 88999888877
No 442
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.02 E-value=0.29 Score=55.01 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=22.3
Q ss_pred ceEEEeccCCCccchHHHHHHHHhc
Q 001788 666 MWLLFMGPDRVGKKKMASALSELVS 690 (1013)
Q Consensus 666 ~~lLf~Gp~GvGKT~lAr~LA~~l~ 690 (1013)
..+.+.||+|+|||++|+.|...+.
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3588999999999999999988875
No 443
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.02 E-value=0.82 Score=57.50 Aligned_cols=121 Identities=12% Similarity=0.038 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhc-CC-CCcee
Q 001788 620 DSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVS-GA-SPIMI 697 (1013)
Q Consensus 620 e~l~~L~~~L~~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~-~~-~~~~i 697 (1013)
+-.+.|.+.+.+.. ..+++...+...|.............- ....+++|+||+|+|||+++..||..+. .. ...+.
T Consensus 142 ~la~~l~~~l~~~~-~~~~~~~~l~~~L~~~l~il~~~~~~~-~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~ 219 (767)
T PRK14723 142 QLARALLERLPVGY-DRPAAMAWIRNELATHLPVLRDEDALL-AQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLA 219 (767)
T ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhhhccCCCccc-CCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEE
Confidence 33444445554432 333445555555544332111111100 1234699999999999999998987652 22 12333
Q ss_pred eeCCCCCCCCC------------cccccccchhhhHHHHHHc-CCCEEEEEeCCCCCCH
Q 001788 698 PLGPRRDHEEP------------EVRVRGKTALDKIGEAVKR-NPFSVILLEDIDEADM 743 (1013)
Q Consensus 698 ~id~s~~~~~~------------~~g~~G~~~~~~L~eal~~-~p~~VV~lDEIdka~~ 743 (1013)
-+++..|..+. .+-++.++ ...+.+++.. ..+.+||||=..+.+.
T Consensus 220 lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~-~~~l~~al~~~~~~D~VLIDTAGRs~~ 277 (767)
T PRK14723 220 LLTTDSFRIGALEQLRIYGRILGVPVHAVKD-AADLRFALAALGDKHLVLIDTVGMSQR 277 (767)
T ss_pred EecCcccchHHHHHHHHHHHhCCCCccccCC-HHHHHHHHHHhcCCCEEEEeCCCCCcc
Confidence 34444442111 01122222 3345555554 3457999999998764
No 444
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.00 E-value=0.091 Score=55.84 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=22.7
Q ss_pred ceEEEeccCCCccchHHHHHHHHhc
Q 001788 666 MWLLFMGPDRVGKKKMASALSELVS 690 (1013)
Q Consensus 666 ~~lLf~Gp~GvGKT~lAr~LA~~l~ 690 (1013)
..+.+.|++|+|||++++.|++.+.
T Consensus 7 ~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3599999999999999999999884
No 445
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=92.95 E-value=0.17 Score=55.95 Aligned_cols=36 Identities=11% Similarity=-0.000 Sum_probs=28.5
Q ss_pred ceEEEEecCHHHHHHhhhcCCCCCCCCCCeeeeccCCCC
Q 001788 322 RLWLIGTATCETYLRCQVYHPSMENDWDLQAVPIAAKTP 360 (1013)
Q Consensus 322 ~~~~IgatT~~~Y~k~~~~~~ale~~~rfq~v~v~e~~~ 360 (1013)
.+++|+|++...|.--.+..++| -+||..+.|+- |+
T Consensus 151 ~frvIaTsN~~~~~g~~~l~~aL--~~R~~~i~i~~-P~ 186 (262)
T TIGR02640 151 EFRVIFTSNPVEYAGVHETQDAL--LDRLITIFMDY-PD 186 (262)
T ss_pred CCEEEEeeCCccccceecccHHH--HhhcEEEECCC-CC
Confidence 67899999987776555667888 88898888887 63
No 446
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=92.92 E-value=0.37 Score=52.36 Aligned_cols=34 Identities=15% Similarity=0.138 Sum_probs=22.6
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCCCCceeeeC
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGASPIMIPLG 700 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id 700 (1013)
.+++.||+|+|||++|..++..+.......+.++
T Consensus 26 ~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 26 LILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 4999999999999998555443422223444444
No 447
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.91 E-value=0.085 Score=54.58 Aligned_cols=31 Identities=16% Similarity=0.346 Sum_probs=26.5
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGP 701 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~ 701 (1013)
++|.|++|+|||++++.||+.+. .+++..|.
T Consensus 7 I~liG~~GaGKStl~~~La~~l~---~~~vd~D~ 37 (172)
T PRK05057 7 IFLVGPMGAGKSTIGRQLAQQLN---MEFYDSDQ 37 (172)
T ss_pred EEEECCCCcCHHHHHHHHHHHcC---CcEEECCc
Confidence 99999999999999999999874 56666663
No 448
>PTZ00088 adenylate kinase 1; Provisional
Probab=92.90 E-value=0.085 Score=57.27 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=21.7
Q ss_pred EEEeccCCCccchHHHHHHHHhc
Q 001788 668 LLFMGPDRVGKKKMASALSELVS 690 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~ 690 (1013)
++|.||||+|||++|+.||+.+.
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999999874
No 449
>PRK02496 adk adenylate kinase; Provisional
Probab=92.86 E-value=0.079 Score=55.11 Aligned_cols=24 Identities=38% Similarity=0.630 Sum_probs=22.0
Q ss_pred eEEEeccCCCccchHHHHHHHHhc
Q 001788 667 WLLFMGPDRVGKKKMASALSELVS 690 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~ 690 (1013)
+++|.||||+|||++|+.|++.+.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~ 26 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLH 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999874
No 450
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=92.84 E-value=0.48 Score=54.67 Aligned_cols=125 Identities=13% Similarity=0.218 Sum_probs=71.2
Q ss_pred cCCC--hhHHHHHHHHHHHHhcCCcc-cccCcEEEEeccc-ccc--------------------chh-hhHHHHHHHHHH
Q 001788 204 GGQS--EPEMVVRESLAKIESKELDG-VLKNVQIIRLDKD-FTC--------------------DKA-GIVSKLKDLGAL 258 (1013)
Q Consensus 204 vG~~--gkta~v~~la~~i~~~~vp~-~L~~~~~~~l~~~-~~~--------------------~rg-e~e~r~~~l~~~ 258 (1013)
.|+| |||++++.++..+.... +. .+ ...++.++.. ... .+| .+++.++.+.+.
T Consensus 46 ~G~~GtGKT~l~~~~~~~l~~~~-~~~~~-~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 123 (365)
T TIGR02928 46 YGKTGTGKTAVTKYVMKELEEAA-EDRDV-RVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKE 123 (365)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHh-hccCC-ceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHH
Confidence 9999 99999999998875311 10 01 1445555532 110 011 234445666666
Q ss_pred HHhhcCCCCceEEEecchhHHHhcccccCCCCCCCcchhhhhHHHHHHHHHHHHHh-hhcCCCCceEEEEecCHHHHHHh
Q 001788 259 IETKFGNGDGVILDLGDLKWLVEQQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVA-RFGGGGGRLWLIGTATCETYLRC 337 (1013)
Q Consensus 259 ~~~~~~~~~~~il~idel~~l~~~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llk-~~~~~~g~~~~IgatT~~~Y~k~ 337 (1013)
++.. +.++||+|||++.|++... ... .++.++.. ... ....+.+|++++.-.++..
T Consensus 124 l~~~---~~~~vlvIDE~d~L~~~~~----------------~~L---~~l~~~~~~~~~-~~~~v~lI~i~n~~~~~~~ 180 (365)
T TIGR02928 124 LNER---GDSLIIVLDEIDYLVGDDD----------------DLL---YQLSRARSNGDL-DNAKVGVIGISNDLKFREN 180 (365)
T ss_pred HHhc---CCeEEEEECchhhhccCCc----------------HHH---HhHhccccccCC-CCCeEEEEEEECCcchHhh
Confidence 6543 6789999999999984321 111 13333311 122 2368999999876554432
Q ss_pred hhcCCCCCCCCCCe--eeeccC
Q 001788 338 QVYHPSMENDWDLQ--AVPIAA 357 (1013)
Q Consensus 338 ~~~~~ale~~~rfq--~v~v~e 357 (1013)
.++.+ .+||. .|.++.
T Consensus 181 --l~~~~--~s~~~~~~i~f~p 198 (365)
T TIGR02928 181 --LDPRV--KSSLCEEEIIFPP 198 (365)
T ss_pred --cCHHH--hccCCcceeeeCC
Confidence 35667 67774 355544
No 451
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.83 E-value=0.086 Score=55.51 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=21.4
Q ss_pred EEEeccCCCccchHHHHHHHHhc
Q 001788 668 LLFMGPDRVGKKKMASALSELVS 690 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~ 690 (1013)
+.+.||+|+|||++++.|+..+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~ 24 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLG 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999999883
No 452
>PRK14531 adenylate kinase; Provisional
Probab=92.81 E-value=0.09 Score=54.82 Aligned_cols=23 Identities=39% Similarity=0.615 Sum_probs=21.6
Q ss_pred EEEeccCCCccchHHHHHHHHhc
Q 001788 668 LLFMGPDRVGKKKMASALSELVS 690 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~ 690 (1013)
++|+||||+|||++++.||+.+.
T Consensus 5 i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 5 LLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999999874
No 453
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=92.75 E-value=0.64 Score=47.65 Aligned_cols=87 Identities=17% Similarity=0.237 Sum_probs=53.0
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCC---C-CCCC--cc----c---c-cccc------hhhhHHHHHH
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRR---D-HEEP--EV----R---V-RGKT------ALDKIGEAVK 726 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~---~-~~~~--~~----g---~-~G~~------~~~~L~eal~ 726 (1013)
.+.+.||+|+|||++++.|+..+...... +.++-.. | .... .. . + .... ..=.+..++-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~laral~ 107 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLWPWGSGR-IGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARLLL 107 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCce-EEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHHHHH
Confidence 48999999999999999999876432221 2222100 0 0000 00 0 0 0000 0113555666
Q ss_pred cCCCEEEEEeCCC-CCCHHHHHHHHHHHHc
Q 001788 727 RNPFSVILLEDID-EADMVVRGNIKRAMER 755 (1013)
Q Consensus 727 ~~p~~VV~lDEId-ka~~~vq~~LL~~le~ 755 (1013)
.+| .++++||-. .+|+..+..|.+++.+
T Consensus 108 ~~p-~~lllDEPt~~LD~~~~~~l~~~l~~ 136 (166)
T cd03223 108 HKP-KFVFLDEATSALDEESEDRLYQLLKE 136 (166)
T ss_pred cCC-CEEEEECCccccCHHHHHHHHHHHHH
Confidence 666 899999986 5789999999999974
No 454
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=92.71 E-value=0.34 Score=52.82 Aligned_cols=86 Identities=13% Similarity=0.164 Sum_probs=57.1
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCC-----------CCccccc----ccchhhhHHHHHHcCCC-E
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHE-----------EPEVRVR----GKTALDKIGEAVKRNPF-S 731 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~-----------~~~~g~~----G~~~~~~L~eal~~~p~-~ 731 (1013)
+.++|+.|+|||.+.|++...+.++....+.+|-..... ..+|... .......|.+...+..+ -
T Consensus 54 ~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v 133 (269)
T COG3267 54 LAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRPV 133 (269)
T ss_pred EEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCCe
Confidence 899999999999999988888876665556676543321 1111100 00012345555555555 6
Q ss_pred EEEEeCCCCCCHHHHHHHHHHH
Q 001788 732 VILLEDIDEADMVVRGNIKRAM 753 (1013)
Q Consensus 732 VV~lDEIdka~~~vq~~LL~~l 753 (1013)
++++||.+.+..++...|..+.
T Consensus 134 ~l~vdEah~L~~~~le~Lrll~ 155 (269)
T COG3267 134 VLMVDEAHDLNDSALEALRLLT 155 (269)
T ss_pred EEeehhHhhhChhHHHHHHHHH
Confidence 7899999999999888866555
No 455
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=92.70 E-value=0.18 Score=50.04 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=22.5
Q ss_pred eEEEeccCCCccchHHHHHHHHhc
Q 001788 667 WLLFMGPDRVGKKKMASALSELVS 690 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~ 690 (1013)
+++|.|+.|+|||+++|.+++.+.
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 499999999999999999999885
No 456
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.66 E-value=0.27 Score=50.66 Aligned_cols=87 Identities=16% Similarity=0.205 Sum_probs=52.4
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCC-------------CCCcccccccch------------hhhH
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDH-------------EEPEVRVRGKTA------------LDKI 721 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~-------------~~~~~g~~G~~~------------~~~L 721 (1013)
++.+.||+|+|||++.+.|+........ -+.++..... ...+.-+.+.+. .=.+
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv~l 106 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLLKPDSG-EIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRLAL 106 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHHHHHH
Confidence 4899999999999999999987632221 1223221100 000000111111 1134
Q ss_pred HHHHHcCCCEEEEEeCCC-CCCHHHHHHHHHHHHc
Q 001788 722 GEAVKRNPFSVILLEDID-EADMVVRGNIKRAMER 755 (1013)
Q Consensus 722 ~eal~~~p~~VV~lDEId-ka~~~vq~~LL~~le~ 755 (1013)
..++-.+| .|+++||-. -+|+..+..+++++.+
T Consensus 107 aral~~~p-~illlDEPt~~LD~~~~~~l~~~l~~ 140 (173)
T cd03230 107 AQALLHDP-ELLILDEPTSGLDPESRREFWELLRE 140 (173)
T ss_pred HHHHHcCC-CEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 55565666 899999985 5788888888888864
No 457
>PRK13946 shikimate kinase; Provisional
Probab=92.63 E-value=0.09 Score=54.91 Aligned_cols=30 Identities=13% Similarity=0.297 Sum_probs=26.7
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLG 700 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id 700 (1013)
|+|.|.+|+|||++++.||+.+. .+|+..|
T Consensus 13 I~l~G~~GsGKsti~~~LA~~Lg---~~~id~D 42 (184)
T PRK13946 13 VVLVGLMGAGKSTVGRRLATMLG---LPFLDAD 42 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC---CCeECcC
Confidence 99999999999999999999985 5677666
No 458
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.60 E-value=2.1 Score=50.59 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=20.9
Q ss_pred ceEEEeccCCCccchHHHHHHHHh
Q 001788 666 MWLLFMGPDRVGKKKMASALSELV 689 (1013)
Q Consensus 666 ~~lLf~Gp~GvGKT~lAr~LA~~l 689 (1013)
..+.|+||+|+|||++...||...
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 459999999999999999998643
No 459
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=92.57 E-value=0.48 Score=50.14 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.4
Q ss_pred eEEEeccCCCccchHHHHHHHHh
Q 001788 667 WLLFMGPDRVGKKKMASALSELV 689 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l 689 (1013)
.++++||.|+|||++.+.|+...
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~~~ 53 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGLAV 53 (202)
T ss_pred EEEEECCCCCccHHHHHHHHHHH
Confidence 39999999999999999999543
No 460
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=92.53 E-value=0.48 Score=50.69 Aligned_cols=26 Identities=15% Similarity=0.196 Sum_probs=22.5
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCC
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGA 692 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~ 692 (1013)
.+.+.||+|+|||++.+.|+......
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl~~~~ 40 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGLDAPD 40 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCccCC
Confidence 48899999999999999999876543
No 461
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.53 E-value=0.31 Score=50.76 Aligned_cols=35 Identities=6% Similarity=0.138 Sum_probs=26.4
Q ss_pred hHHHHHHcC--CCEEEEEeCCC-CCCHHHHHHHHHHHHc
Q 001788 720 KIGEAVKRN--PFSVILLEDID-EADMVVRGNIKRAMER 755 (1013)
Q Consensus 720 ~L~eal~~~--p~~VV~lDEId-ka~~~vq~~LL~~le~ 755 (1013)
.+..++-.+ | .+++|||-- .+++.....|++++.+
T Consensus 97 ~laral~~~~~p-~llLlDEPt~~LD~~~~~~l~~~l~~ 134 (176)
T cd03238 97 KLASELFSEPPG-TLFILDEPSTGLHQQDINQLLEVIKG 134 (176)
T ss_pred HHHHHHhhCCCC-CEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 355666666 5 899999985 5788888888888863
No 462
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=92.49 E-value=0.6 Score=52.83 Aligned_cols=130 Identities=11% Similarity=0.120 Sum_probs=67.5
Q ss_pred HhccccccHHHHHHHHHHHHHhhhhcCCCCCCCCCCCceEEEeccCCCccchHHHHHHHHhcCCCCc--eeeeCCCCCCC
Q 001788 629 LMEKVWWQQEAASAVATTVTQCKLGNGKRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPI--MIPLGPRRDHE 706 (1013)
Q Consensus 629 L~~~ViGQ~~ai~~I~~ai~~~~~g~~~~r~~~sk~~~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~--~i~id~s~~~~ 706 (1013)
|.+-+-|..+.++-+...+..+..+..+ ....++|+|+.|+||+++...|...+ |.... ...+.+...
T Consensus 47 L~~~~~~d~~~~~~l~~~lg~~L~~~~~-------~~~~~~l~G~g~nGKStl~~~l~~l~-G~~~~~~~~~~~~~~~-- 116 (304)
T TIGR01613 47 LLETFGGDNELIEYLQRVIGYSLTGNYT-------EQKLFFLYGNGGNGKSTFQNLLSNLL-GDYATTAVASLKMNEF-- 116 (304)
T ss_pred HHHHhCCCHHHHHHHHHHHhHHhcCCCC-------ceEEEEEECCCCCcHHHHHHHHHHHh-ChhhccCCcchhhhhc--
Confidence 4443445555666666666555444221 12349999999999999999887665 44221 011111110
Q ss_pred CCcccccccchhhhHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHcceEec-CC-CeEeecC-ceEEEEecCC
Q 001788 707 EPEVRVRGKTALDKIGEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVD-SY-GREISLG-NVIFILTADW 779 (1013)
Q Consensus 707 ~~~~g~~G~~~~~~L~eal~~~p~~VV~lDEIdka~~~vq~~LL~~le~G~l~d-~~-g~~vd~~-n~iiI~TSN~ 779 (1013)
-+.. -.+. .+ ....+++.||+++-...-...|..+.....++- .. ...+.+. ++.+|++||-
T Consensus 117 ------~~~~--f~~a-~l--~gk~l~~~~E~~~~~~~~~~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~ 181 (304)
T TIGR01613 117 ------QEHR--FGLA-RL--EGKRAVIGDEVQKGYRDDESTFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNH 181 (304)
T ss_pred ------cCCC--chhh-hh--cCCEEEEecCCCCCccccHHhhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCC
Confidence 0000 0111 11 224789999997643333345555553333331 11 1233333 4568999985
No 463
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.47 E-value=0.23 Score=57.42 Aligned_cols=76 Identities=12% Similarity=0.068 Sum_probs=56.9
Q ss_pred cCCCcccccCCCcccCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-c--ccchhh-hHHHHHHHHHHHHhhc
Q 001788 190 LYMNPRLQQAGGVCGGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-F--TCDKAG-IVSKLKDLGALIETKF 263 (1013)
Q Consensus 190 ~~~np~l~~~~~~~vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~--~~~rge-~e~r~~~l~~~~~~~~ 263 (1013)
.|.|.+| +|++ |||-++..||+-+ +|| |.--|.- + |||-|| +|.=|..|+..++-.+
T Consensus 225 eKSNvLl-------lGPtGsGKTllaqTLAr~l---dVP-------faIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nV 287 (564)
T KOG0745|consen 225 EKSNVLL-------LGPTGSGKTLLAQTLARVL---DVP-------FAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNV 287 (564)
T ss_pred ecccEEE-------ECCCCCchhHHHHHHHHHh---CCC-------eEEecccchhhcccccccHHHHHHHHHHHccCCH
Confidence 4889999 9999 9999999999653 455 6656666 5 688765 8998999988765322
Q ss_pred CCCCceEEEecchhHHHhc
Q 001788 264 GNGDGVILDLGDLKWLVEQ 282 (1013)
Q Consensus 264 ~~~~~~il~idel~~l~~~ 282 (1013)
.....=|+||||+.-+...
T Consensus 288 ekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 288 EKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred HHHhcCeEEEehhhhhccc
Confidence 2234668999999988754
No 464
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.46 E-value=0.087 Score=54.42 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=22.2
Q ss_pred eEEEeccCCCccchHHHHHHHHhc
Q 001788 667 WLLFMGPDRVGKKKMASALSELVS 690 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~ 690 (1013)
++++.||+|+|||++++.|+..+.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999999874
No 465
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=92.44 E-value=0.5 Score=48.66 Aligned_cols=87 Identities=18% Similarity=0.248 Sum_probs=52.7
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCC------Cccccccc-------c-----------hhhhHH
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEE------PEVRVRGK-------T-----------ALDKIG 722 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~------~~~g~~G~-------~-----------~~~~L~ 722 (1013)
.+.+.||+|+|||+|.+.|+........ -+.++-...... ...+|+.. + ..=.+.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~la 108 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLRPTSG-RVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLGLA 108 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCC-eEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHHHHH
Confidence 3899999999999999999987643222 123332111000 00011110 0 111345
Q ss_pred HHHHcCCCEEEEEeCCC-CCCHHHHHHHHHHHHc
Q 001788 723 EAVKRNPFSVILLEDID-EADMVVRGNIKRAMER 755 (1013)
Q Consensus 723 eal~~~p~~VV~lDEId-ka~~~vq~~LL~~le~ 755 (1013)
.++-..| .|+++||-- -+|+..+..+++++.+
T Consensus 109 ~al~~~p-~~lllDEPt~~LD~~~~~~l~~~l~~ 141 (173)
T cd03246 109 RALYGNP-RILVLDEPNSHLDVEGERALNQAIAA 141 (173)
T ss_pred HHHhcCC-CEEEEECCccccCHHHHHHHHHHHHH
Confidence 5555566 899999985 6788888888888863
No 466
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=92.43 E-value=0.29 Score=50.61 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=19.6
Q ss_pred EEEeccCCCccchHHHHHHHH
Q 001788 668 LLFMGPDRVGKKKMASALSEL 688 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~ 688 (1013)
+|+.|++|+|||.+|..++..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~ 22 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE 22 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 689999999999999999876
No 467
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=92.41 E-value=0.099 Score=57.27 Aligned_cols=34 Identities=26% Similarity=0.403 Sum_probs=26.9
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGP 701 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~ 701 (1013)
++|+|+||+|||++|+.|++.+......++.++.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~ 35 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT 35 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc
Confidence 7999999999999999999988543344555543
No 468
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=92.40 E-value=0.23 Score=55.87 Aligned_cols=59 Identities=14% Similarity=0.163 Sum_probs=36.5
Q ss_pred cCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccccccchhhhHHHHHHHHHHHHhhcCCCCceEEEecchhHHHh
Q 001788 204 GGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKDFTCDKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKWLVE 281 (1013)
Q Consensus 204 vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~~~~~rge~e~r~~~l~~~~~~~~~~~~~~il~idel~~l~~ 281 (1013)
.|+| |||.++..+|..+.. .+..++... ..+..++...+... +.+.||||||+|.+-+
T Consensus 36 ~Gp~G~GKT~la~~ia~~~~~----------~~~~~~~~~-------~~~~~~l~~~l~~~---~~~~vl~iDEi~~l~~ 95 (305)
T TIGR00635 36 YGPPGLGKTTLAHIIANEMGV----------NLKITSGPA-------LEKPGDLAAILTNL---EEGDVLFIDEIHRLSP 95 (305)
T ss_pred ECCCCCCHHHHHHHHHHHhCC----------CEEEeccch-------hcCchhHHHHHHhc---ccCCEEEEehHhhhCH
Confidence 9999 999999999987531 222222210 01122333444443 4678999999998864
Q ss_pred c
Q 001788 282 Q 282 (1013)
Q Consensus 282 ~ 282 (1013)
.
T Consensus 96 ~ 96 (305)
T TIGR00635 96 A 96 (305)
T ss_pred H
Confidence 3
No 469
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=92.37 E-value=0.11 Score=55.12 Aligned_cols=32 Identities=31% Similarity=0.465 Sum_probs=25.5
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCCCCceeeeCC
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGASPIMIPLGP 701 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~ 701 (1013)
++++.||||+|||.+|-.||+... .++|..|-
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g---~pvI~~Dr 34 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTG---APVISLDR 34 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH-----EEEEE-S
T ss_pred EEEEECCCCCChhHHHHHHHHHhC---CCEEEecc
Confidence 489999999999999999999986 68888884
No 470
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=92.37 E-value=0.097 Score=54.53 Aligned_cols=37 Identities=19% Similarity=0.158 Sum_probs=28.9
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRD 704 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~ 704 (1013)
+.+.|++|+|||++|+.|++.+.........+.+..|
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf 38 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDY 38 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhc
Confidence 7899999999999999999998533344556666554
No 471
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=92.30 E-value=0.21 Score=58.93 Aligned_cols=72 Identities=13% Similarity=0.115 Sum_probs=52.9
Q ss_pred CCCcccccCCCcccCCC--hhHHHHHHHHHHHHhcCCcccccCcEEEEeccc-c--ccchhh-hHHHHHHHHHH----HH
Q 001788 191 YMNPRLQQAGGVCGGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-F--TCDKAG-IVSKLKDLGAL----IE 260 (1013)
Q Consensus 191 ~~np~l~~~~~~~vG~~--gkta~v~~la~~i~~~~vp~~L~~~~~~~l~~~-~--~~~rge-~e~r~~~l~~~----~~ 260 (1013)
+.|.+| +|+| |||.+++.||.++ +..++.++.. + +||.|+ ++..+..+++. ++
T Consensus 108 ~~~iLl-------~Gp~GtGKT~lAr~lA~~l----------~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~ 170 (412)
T PRK05342 108 KSNILL-------IGPTGSGKTLLAQTLARIL----------DVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVE 170 (412)
T ss_pred CceEEE-------EcCCCCCHHHHHHHHHHHh----------CCCceecchhhcccCCcccchHHHHHHHHHHhccccHH
Confidence 457888 9999 9999999999774 3457888877 5 367775 55555665543 33
Q ss_pred hhcCCCCceEEEecchhHHHhcc
Q 001788 261 TKFGNGDGVILDLGDLKWLVEQQ 283 (1013)
Q Consensus 261 ~~~~~~~~~il~idel~~l~~~~ 283 (1013)
. ..+-|||||||+.+....
T Consensus 171 ~----a~~gIi~iDEIdkl~~~~ 189 (412)
T PRK05342 171 K----AQRGIVYIDEIDKIARKS 189 (412)
T ss_pred H----cCCcEEEEechhhhcccc
Confidence 3 357799999999998663
No 472
>PRK05439 pantothenate kinase; Provisional
Probab=92.25 E-value=0.37 Score=54.62 Aligned_cols=39 Identities=23% Similarity=0.175 Sum_probs=28.4
Q ss_pred ceEEEeccCCCccchHHHHHHHHhcCC--CCceeeeCCCCC
Q 001788 666 MWLLFMGPDRVGKKKMASALSELVSGA--SPIMIPLGPRRD 704 (1013)
Q Consensus 666 ~~lLf~Gp~GvGKT~lAr~LA~~l~~~--~~~~i~id~s~~ 704 (1013)
.++.+.|++|+|||++|+.|+..+... ......+.+..|
T Consensus 87 ~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdF 127 (311)
T PRK05439 87 FIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGF 127 (311)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccc
Confidence 458999999999999999999977432 223445555543
No 473
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=92.19 E-value=0.13 Score=54.75 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=23.1
Q ss_pred ceEEEeccCCCccchHHHHHHHHhcC
Q 001788 666 MWLLFMGPDRVGKKKMASALSELVSG 691 (1013)
Q Consensus 666 ~~lLf~Gp~GvGKT~lAr~LA~~l~~ 691 (1013)
.++.+.||+|+|||++++.|+..+..
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 45899999999999999999998753
No 474
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=92.18 E-value=0.1 Score=54.84 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=23.2
Q ss_pred EEEeccCCCccchHHHHHHHHhcCC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGA 692 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~ 692 (1013)
++|.|+||+|||++|+.||+.|-..
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHh
Confidence 8999999999999999999999644
No 475
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=92.11 E-value=0.88 Score=52.99 Aligned_cols=116 Identities=15% Similarity=0.133 Sum_probs=62.2
Q ss_pred ccCCC--hhHHHHHHHHHHHHhcCCcccccCcE-EEEec--c------------c--cc-cchhhhHHHHH---HHHHHH
Q 001788 203 CGGQS--EPEMVVRESLAKIESKELDGVLKNVQ-IIRLD--K------------D--FT-CDKAGIVSKLK---DLGALI 259 (1013)
Q Consensus 203 ~vG~~--gkta~v~~la~~i~~~~vp~~L~~~~-~~~l~--~------------~--~~-~~rge~e~r~~---~l~~~~ 259 (1013)
+||++ |||.+++.++..+.... | ++. +|.+- . + ++ ..-+.-+.|+. .++..+
T Consensus 174 IvgppGvGKTTLaK~Ian~I~~nh-F----Dv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 174 IVAPPKAGKTVLLQNIANSITTNH-P----EVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred EeCCCCCChhHHHHHHHHHHHhhc-C----CeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 79999 99999999999988761 1 122 11110 0 0 11 11222233333 333444
Q ss_pred HhhcCCCCceEEEecchhHHHhcccc---cCCCCCCCcchhhhhHHHHHHHHHHHHHhhhcC--CCCceEEEEec
Q 001788 260 ETKFGNGDGVILDLGDLKWLVEQQVT---SFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGG--GGGRLWLIGTA 329 (1013)
Q Consensus 260 ~~~~~~~~~~il~idel~~l~~~~~~---~~g~~~~~~~~~~~~~~~~~V~e~~~llk~~~~--~~g~~~~Igat 329 (1013)
+.....+..|||||||||.+..+... .+| +.++ ..|...+.+ ...+++..+.- .+|.|..|+|+
T Consensus 249 e~~~e~G~dVlL~iDsItR~arAqrev~~~sG--~~~s-gG~~~~~~~---~~~r~f~~Arn~e~~GSlT~i~T~ 317 (416)
T PRK09376 249 KRLVEHGKDVVILLDSITRLARAYNTVVPSSG--KVLS-GGVDANALH---RPKRFFGAARNIEEGGSLTIIATA 317 (416)
T ss_pred HHHHHcCCCEEEEEEChHHHHHHHHhhhhccC--CCCC-CCCChhHhh---hhHHHHHhhcCCCCCcceEEEEEE
Confidence 43322378999999999999888743 222 2222 222222222 33444443331 26788888873
No 476
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=92.11 E-value=0.55 Score=50.10 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=18.0
Q ss_pred EEEeccCCCccchHHHHHHHHhc
Q 001788 668 LLFMGPDRVGKKKMASALSELVS 690 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~ 690 (1013)
+.+.||.|||||.+|-+.|-.+.
T Consensus 22 v~~~G~AGTGKT~LA~a~Al~~v 44 (205)
T PF02562_consen 22 VIVNGPAGTGKTFLALAAALELV 44 (205)
T ss_dssp EEEE--TTSSTTHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 89999999999999988885443
No 477
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=92.10 E-value=0.1 Score=53.98 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=21.7
Q ss_pred eEEEeccCCCccchHHHHHHHHhc
Q 001788 667 WLLFMGPDRVGKKKMASALSELVS 690 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~ 690 (1013)
.+++.||||+|||++|+.|++.+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g 28 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYG 28 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999998763
No 478
>PRK14528 adenylate kinase; Provisional
Probab=91.93 E-value=0.14 Score=53.62 Aligned_cols=23 Identities=43% Similarity=0.703 Sum_probs=21.4
Q ss_pred EEEeccCCCccchHHHHHHHHhc
Q 001788 668 LLFMGPDRVGKKKMASALSELVS 690 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~ 690 (1013)
+++.||||+|||++|+.|++.+.
T Consensus 4 i~i~G~pGsGKtt~a~~la~~~~ 26 (186)
T PRK14528 4 IIFMGPPGAGKGTQAKILCERLS 26 (186)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999998874
No 479
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=91.88 E-value=0.15 Score=53.57 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=23.2
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCC
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGA 692 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~ 692 (1013)
++.+.||+|+|||++|+.|+..+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 37899999999999999999999644
No 480
>PRK03846 adenylylsulfate kinase; Provisional
Probab=91.75 E-value=0.16 Score=53.66 Aligned_cols=36 Identities=28% Similarity=0.264 Sum_probs=29.3
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCC
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPR 702 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s 702 (1013)
++.|.|++|+|||++|+.|+..++......+.+|..
T Consensus 26 ~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d 61 (198)
T PRK03846 26 VLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGD 61 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCE
Confidence 589999999999999999999987554455666653
No 481
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.72 E-value=0.39 Score=49.37 Aligned_cols=88 Identities=19% Similarity=0.223 Sum_probs=53.4
Q ss_pred ceEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCC------ccccc-------ccch-----------hhhH
Q 001788 666 MWLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEP------EVRVR-------GKTA-----------LDKI 721 (1013)
Q Consensus 666 ~~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~------~~g~~-------G~~~-----------~~~L 721 (1013)
.++.+.||+|+|||++.+.|+..+...... +.++-....... ..+|+ ..+. .=.|
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~rl~l 107 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYDPTSGE-ILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQRIAI 107 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCE-EEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHHHHH
Confidence 358999999999999999999876433221 223321100000 00111 0000 1124
Q ss_pred HHHHHcCCCEEEEEeCCC-CCCHHHHHHHHHHHHc
Q 001788 722 GEAVKRNPFSVILLEDID-EADMVVRGNIKRAMER 755 (1013)
Q Consensus 722 ~eal~~~p~~VV~lDEId-ka~~~vq~~LL~~le~ 755 (1013)
..++-..| .++++||-. -+|+.....|.+++.+
T Consensus 108 a~al~~~p-~llllDEP~~gLD~~~~~~l~~~l~~ 141 (171)
T cd03228 108 ARALLRDP-PILILDEATSALDPETEALILEALRA 141 (171)
T ss_pred HHHHhcCC-CEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 55555566 899999985 6788888888888864
No 482
>PRK07667 uridine kinase; Provisional
Probab=91.64 E-value=0.17 Score=53.30 Aligned_cols=38 Identities=18% Similarity=0.080 Sum_probs=29.8
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCC
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRD 704 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~ 704 (1013)
.+.+.|++|+|||++|+.|++.+.....+...+++..|
T Consensus 19 iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 19 ILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 48999999999999999999998644445555555554
No 483
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=91.61 E-value=0.34 Score=52.40 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=24.1
Q ss_pred ceEEEeccCCCccchHHHHHHHHhcCCC
Q 001788 666 MWLLFMGPDRVGKKKMASALSELVSGAS 693 (1013)
Q Consensus 666 ~~lLf~Gp~GvGKT~lAr~LA~~l~~~~ 693 (1013)
..+.|.||+|+|||++++.|+..+....
T Consensus 34 ~iigi~G~~GsGKTTl~~~L~~~l~~~~ 61 (229)
T PRK09270 34 TIVGIAGPPGAGKSTLAEFLEALLQQDG 61 (229)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence 3489999999999999999999886443
No 484
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=91.55 E-value=0.14 Score=54.61 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=21.2
Q ss_pred EEEeccCCCccchHHHHHHHHhc
Q 001788 668 LLFMGPDRVGKKKMASALSELVS 690 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~ 690 (1013)
+++.||||+|||++|+.||+.+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g 24 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG 24 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999998763
No 485
>PF13245 AAA_19: Part of AAA domain
Probab=91.54 E-value=0.16 Score=45.40 Aligned_cols=22 Identities=32% Similarity=0.673 Sum_probs=16.5
Q ss_pred EEEeccCCCccc-hHHHHHHHHh
Q 001788 668 LLFMGPDRVGKK-KMASALSELV 689 (1013)
Q Consensus 668 lLf~Gp~GvGKT-~lAr~LA~~l 689 (1013)
+++.||||+||| +++..+++.+
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 667999999999 5555555555
No 486
>PRK12608 transcription termination factor Rho; Provisional
Probab=91.48 E-value=0.38 Score=55.66 Aligned_cols=96 Identities=20% Similarity=0.250 Sum_probs=0.0
Q ss_pred EEEeccCCCccchHHHHHHHHhcCC--CCceee--------------------eCCCCCCCCCcccccccchhhhHHHHH
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGA--SPIMIP--------------------LGPRRDHEEPEVRVRGKTALDKIGEAV 725 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~--~~~~i~--------------------id~s~~~~~~~~g~~G~~~~~~L~eal 725 (1013)
.+++||+|+|||++++.|++.+... +..++. +-.+.....+.....-....-.+.+.+
T Consensus 136 ~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae~f 215 (380)
T PRK12608 136 GLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAKRL 215 (380)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHHHH
Q ss_pred HcCCCE-EEEEeCCC-------------------CCCHHHHHHHHHHHH-------cceEecCCCeEeecCceEEEEe
Q 001788 726 KRNPFS-VILLEDID-------------------EADMVVRGNIKRAME-------RGRLVDSYGREISLGNVIFILT 776 (1013)
Q Consensus 726 ~~~p~~-VV~lDEId-------------------ka~~~vq~~LL~~le-------~G~l~d~~g~~vd~~n~iiI~T 776 (1013)
....+. ||++|++. -.++.+...+-++++ .|.+| +|+|
T Consensus 216 ~~~GkdVVLvlDsltr~A~A~rei~~~~G~~~s~G~~~s~~~~~~rl~~~A~~~~~~GSiT-------------~i~T 280 (380)
T PRK12608 216 VEQGKDVVILLDSLTRLARAYNNEVESSGRTLSGGVDARALQRPKRLFGAARNIEEGGSLT-------------IIAT 280 (380)
T ss_pred HHcCCCEEEEEeCcHHHHHHHHhhhcccCCCCCCCcChHHHhhhHHHHHhcCCCCCCcchh-------------heEE
No 487
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=91.43 E-value=0.28 Score=57.74 Aligned_cols=93 Identities=14% Similarity=0.203 Sum_probs=58.7
Q ss_pred EEEeccCCCccchHHHHHHHHhc---CCC--CceeeeCCCCCCCCCcccccccchhhhHHHHHHcCCCEEEEEeCCCCCC
Q 001788 668 LLFMGPDRVGKKKMASALSELVS---GAS--PIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKRNPFSVILLEDIDEAD 742 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~---~~~--~~~i~id~s~~~~~~~~g~~G~~~~~~L~eal~~~p~~VV~lDEIdka~ 742 (1013)
++=.||.|||||++=+.|+.... |.. .+-.-.|++. -..|.+|. +.+|.||||....
T Consensus 211 liELgPrGTGKS~vy~eiSp~~~liSGG~~T~A~LFyn~~~----~~~GlV~~--------------~D~VafDEv~~i~ 272 (457)
T PF13337_consen 211 LIELGPRGTGKSYVYKEISPYGILISGGQVTVAKLFYNMST----GQIGLVGR--------------WDVVAFDEVAGIK 272 (457)
T ss_pred eEEEcCCCCCceeehhhcCcccEEEECCCcchHHheeeccC----Ccceeeee--------------ccEEEEEeccCcc
Confidence 88999999999999777655422 000 0000111111 01122222 3789999998764
Q ss_pred ---HHHHHHHHHHHHcceEecCCCeEeecCceEEEEecCCC
Q 001788 743 ---MVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWL 780 (1013)
Q Consensus 743 ---~~vq~~LL~~le~G~l~d~~g~~vd~~n~iiI~TSN~g 780 (1013)
++....|..+|++|.++.++. --..++=+||..|+-
T Consensus 273 f~d~d~i~imK~YMesG~fsRG~~--~i~a~as~vf~GNi~ 311 (457)
T PF13337_consen 273 FKDKDEIQIMKDYMESGSFSRGKE--EINADASMVFVGNIN 311 (457)
T ss_pred cCChHHHHHHHHHHhccceeeccc--ccccceeEEEEcCcC
Confidence 666699999999999996653 233444588888864
No 488
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=91.41 E-value=0.32 Score=59.93 Aligned_cols=26 Identities=15% Similarity=0.492 Sum_probs=23.2
Q ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHH
Q 001788 729 PFSVILLEDIDEADMVVRGNIKRAME 754 (1013)
Q Consensus 729 p~~VV~lDEIdka~~~vq~~LL~~le 754 (1013)
+..||++||+-.++......|++++.
T Consensus 259 ~~dvlIiDEaSMvd~~l~~~ll~al~ 284 (586)
T TIGR01447 259 PLDVLVVDEASMVDLPLMAKLLKALP 284 (586)
T ss_pred cccEEEEcccccCCHHHHHHHHHhcC
Confidence 46799999999999999999998885
No 489
>PRK00279 adk adenylate kinase; Reviewed
Probab=91.39 E-value=0.16 Score=54.24 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=21.6
Q ss_pred EEEeccCCCccchHHHHHHHHhc
Q 001788 668 LLFMGPDRVGKKKMASALSELVS 690 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~ 690 (1013)
+++.||||+|||++|+.||+.+.
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999999874
No 490
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=91.39 E-value=0.45 Score=52.36 Aligned_cols=86 Identities=19% Similarity=0.226 Sum_probs=52.5
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCC---CC--------------CCccc--------ccc-cchhhhH
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRD---HE--------------EPEVR--------VRG-KTALDKI 721 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~---~~--------------~~~~g--------~~G-~~~~~~L 721 (1013)
+-+.|++|||||+++|.|.+....... -|.++..+. .. +.++. +-| ..+.=.+
T Consensus 42 ~glVGESG~GKSTlgr~i~~L~~pt~G-~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~I 120 (268)
T COG4608 42 LGLVGESGCGKSTLGRLILGLEEPTSG-EILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGI 120 (268)
T ss_pred EEEEecCCCCHHHHHHHHHcCcCCCCc-eEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHH
Confidence 899999999999999999997753322 233332111 00 11110 111 1111135
Q ss_pred HHHHHcCCCEEEEEeCCCC-CCHHHHHHHHHHHHc
Q 001788 722 GEAVKRNPFSVILLEDIDE-ADMVVRGNIKRAMER 755 (1013)
Q Consensus 722 ~eal~~~p~~VV~lDEIdk-a~~~vq~~LL~~le~ 755 (1013)
+.++.-+| .+|+.||.-. ++..+|..++.+|.+
T Consensus 121 ARALal~P-~liV~DEpvSaLDvSiqaqIlnLL~d 154 (268)
T COG4608 121 ARALALNP-KLIVADEPVSALDVSVQAQILNLLKD 154 (268)
T ss_pred HHHHhhCC-cEEEecCchhhcchhHHHHHHHHHHH
Confidence 66777777 7888999865 467777777777753
No 491
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=91.36 E-value=0.49 Score=53.46 Aligned_cols=26 Identities=19% Similarity=0.196 Sum_probs=22.9
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCC
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGA 692 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~ 692 (1013)
++.|.|++|+|||+++..|+..+...
T Consensus 36 ~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 36 RVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 48999999999999999999887654
No 492
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.31 E-value=0.59 Score=52.04 Aligned_cols=87 Identities=11% Similarity=0.154 Sum_probs=51.9
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCCCCCCC---------ccc---ccccchhhhHHHHHH---c-CCC
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEP---------EVR---VRGKTALDKIGEAVK---R-NPF 730 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~~~~~~---------~~g---~~G~~~~~~L~eal~---~-~p~ 730 (1013)
+++|.||+|+|||++++.|+..+.........+++..+..+. ..+ +... ....+.+++. . ..+
T Consensus 77 ~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~-~~~~l~~~l~~l~~~~~~ 155 (270)
T PRK06731 77 TIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR-DEAAMTRALTYFKEEARV 155 (270)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecC-CHHHHHHHHHHHHhcCCC
Confidence 499999999999999999998876433333334443321100 001 1111 1223444432 2 357
Q ss_pred EEEEEeCCCCCC--HHHHHHHHHHHH
Q 001788 731 SVILLEDIDEAD--MVVRGNIKRAME 754 (1013)
Q Consensus 731 ~VV~lDEIdka~--~~vq~~LL~~le 754 (1013)
.+|+||-..+.+ ......|.++++
T Consensus 156 D~ViIDt~Gr~~~~~~~l~el~~~~~ 181 (270)
T PRK06731 156 DYILIDTAGKNYRASETVEEMIETMG 181 (270)
T ss_pred CEEEEECCCCCcCCHHHHHHHHHHHh
Confidence 899999999985 455566666664
No 493
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=91.24 E-value=0.71 Score=47.74 Aligned_cols=86 Identities=10% Similarity=0.119 Sum_probs=53.6
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCCCCceeeeCCCC-------------CCCCCcccccc--------------cchhh
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGASPIMIPLGPRR-------------DHEEPEVRVRG--------------KTALD 719 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id~s~-------------~~~~~~~g~~G--------------~~~~~ 719 (1013)
.+.+.||+|+|||++++.|+......... +.++-.. |.... +.+.. ....-
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~i~~~~q~-~~~~~~tv~~~i~~~LS~G~~qrv 107 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDLKPQQGE-ITLDGVPVSDLEKALSSLISVLNQR-PYLFDTTLRNNLGRRFSGGERQRL 107 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCE-EEECCEEHHHHHHHHHhhEEEEccC-CeeecccHHHhhcccCCHHHHHHH
Confidence 38999999999999999999876433221 2233210 00000 00100 00011
Q ss_pred hHHHHHHcCCCEEEEEeCCC-CCCHHHHHHHHHHHHc
Q 001788 720 KIGEAVKRNPFSVILLEDID-EADMVVRGNIKRAMER 755 (1013)
Q Consensus 720 ~L~eal~~~p~~VV~lDEId-ka~~~vq~~LL~~le~ 755 (1013)
.|..++-.+| .|+++||-- .+|+.....+++++.+
T Consensus 108 ~laral~~~p-~~lllDEP~~~LD~~~~~~l~~~l~~ 143 (178)
T cd03247 108 ALARILLQDA-PIVLLDEPTVGLDPITERQLLSLIFE 143 (178)
T ss_pred HHHHHHhcCC-CEEEEECCcccCCHHHHHHHHHHHHH
Confidence 3555666666 899999985 6799999999999864
No 494
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=91.21 E-value=0.29 Score=51.57 Aligned_cols=19 Identities=26% Similarity=0.282 Sum_probs=14.1
Q ss_pred eEEEeccCCCccchHHHHH
Q 001788 667 WLLFMGPDRVGKKKMASAL 685 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~L 685 (1013)
..+++|.+|+|||..|-..
T Consensus 2 I~~~~G~pGsGKS~~av~~ 20 (193)
T PF05707_consen 2 IYLITGKPGSGKSYYAVSY 20 (193)
T ss_dssp EEEEE--TTSSHHHHHHHH
T ss_pred EEEEEcCCCCcHhHHHHHH
Confidence 3789999999999988544
No 495
>PRK04182 cytidylate kinase; Provisional
Probab=91.19 E-value=0.14 Score=52.52 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=22.2
Q ss_pred eEEEeccCCCccchHHHHHHHHhc
Q 001788 667 WLLFMGPDRVGKKKMASALSELVS 690 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~ 690 (1013)
.+++.|++|+|||++|+.||+.+.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999999875
No 496
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.19 E-value=0.15 Score=53.81 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=21.8
Q ss_pred ceEEEeccCCCccchHHHHHHHHh
Q 001788 666 MWLLFMGPDRVGKKKMASALSELV 689 (1013)
Q Consensus 666 ~~lLf~Gp~GvGKT~lAr~LA~~l 689 (1013)
..++|.||+|+|||++++.|+..+
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 359999999999999999999975
No 497
>PLN02165 adenylate isopentenyltransferase
Probab=91.15 E-value=0.18 Score=57.42 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=25.7
Q ss_pred eEEEeccCCCccchHHHHHHHHhcCCCCceeeeC
Q 001788 667 WLLFMGPDRVGKKKMASALSELVSGASPIMIPLG 700 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id 700 (1013)
.++|.||||+|||++|..||+.+. ..+|..|
T Consensus 45 iivIiGPTGSGKStLA~~LA~~l~---~eIIsaD 75 (334)
T PLN02165 45 VVVIMGATGSGKSRLSVDLATRFP---SEIINSD 75 (334)
T ss_pred EEEEECCCCCcHHHHHHHHHHHcC---CceecCC
Confidence 399999999999999999999875 2455544
No 498
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=91.15 E-value=0.15 Score=53.25 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.7
Q ss_pred eEEEeccCCCccchHHHHHHHHhc
Q 001788 667 WLLFMGPDRVGKKKMASALSELVS 690 (1013)
Q Consensus 667 ~lLf~Gp~GvGKT~lAr~LA~~l~ 690 (1013)
.++|.||+|+|||++++.|+..+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 489999999999999999988764
No 499
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=91.14 E-value=0.19 Score=54.21 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=26.5
Q ss_pred EEEeccCCCccchHHHHHHHHhcC--CCCceeeeCCCC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSG--ASPIMIPLGPRR 703 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~--~~~~~i~id~s~ 703 (1013)
+.+.||+|+|||++|+.|+..+.. .......+.+..
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~ 39 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDG 39 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCc
Confidence 678999999999999999998852 223344455554
No 500
>PLN02199 shikimate kinase
Probab=91.14 E-value=0.28 Score=54.88 Aligned_cols=30 Identities=13% Similarity=0.264 Sum_probs=26.5
Q ss_pred EEEeccCCCccchHHHHHHHHhcCCCCceeeeC
Q 001788 668 LLFMGPDRVGKKKMASALSELVSGASPIMIPLG 700 (1013)
Q Consensus 668 lLf~Gp~GvGKT~lAr~LA~~l~~~~~~~i~id 700 (1013)
++|.|.+|+|||++++.||+.+. .+|+..|
T Consensus 105 I~LIG~~GSGKSTVgr~LA~~Lg---~~fIDtD 134 (303)
T PLN02199 105 MYLVGMMGSGKTTVGKLMSKVLG---YTFFDCD 134 (303)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC---CCEEehH
Confidence 99999999999999999999885 5677655
Done!