Query 001788
Match_columns 1013
No_of_seqs 289 out of 2284
Neff 6.8
Searched_HMMs 29240
Date Tue Mar 26 16:33:56 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001788.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1084-1088//hhsearch_pdb/001788hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qvr_A CLPB protein; coiled co 1.0 1 1 673.8 47.9 761 8-975 2-831 (854)
2 3pxi_A Negative regulator of g 1.0 1 1 652.5 40.0 674 8-975 2-736 (758)
3 1r6b_X CLPA protein; AAA+, N-t 1.0 1 1 621.9 46.5 654 12-975 2-727 (758)
4 3pxg_A Negative regulator of g 1.0 1 1 370.9 20.5 351 8-429 2-409 (468)
5 4fcw_A Chaperone protein CLPB; 1.0 1 1 240.4 24.8 275 618-975 4-290 (311)
6 3hws_A ATP-dependent CLP prote 1.0 1 1 217.5 8.2 281 622-969 6-328 (363)
7 3cf2_A TER ATPase, transitiona 1.0 1 1 197.1 11.5 126 203-360 243-373 (806)
8 1um8_A ATP-dependent CLP prote 1.0 1 1 196.9 19.1 282 620-970 10-346 (376)
9 1g41_A Heat shock protein HSLU 1.0 1 1 176.4 17.8 145 724-969 244-413 (444)
10 1ofh_A ATP-dependent HSL prote 1.0 1 1 169.7 19.9 233 622-967 6-277 (310)
No 1
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=1.00 E-value=1 Score=673.84 Aligned_cols=761 Identities=20% Similarity=0.233 Sum_probs=583.7
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 54211599999999999999971999888999999980899808999999709999954568999999999811067766
Q 001788 8 IQQTLTPEAASVLNHSIAEASRRNHGQTTPLHVAATLLASPSGYLRQACIKSHPNSSHPLQCRALELCFSVALERLPTAQ 87 (1013)
Q Consensus 8 ~~~~~T~~a~~aL~~A~~~A~~~~h~~itp~HLl~aLL~~~~gll~~~l~~~~~~~~~~~~~~~L~~~~~~~L~r~p~~~ 87 (1013)
+.++||++++++|..|+.+|++++|++|+|+|||++||++++|++..++.+++++ ...++..+...+.+.|...
T Consensus 2 ~~~~~t~~a~~al~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd------~~~l~~~l~~~l~~~p~~~ 75 (854)
T 1qvr_A 2 NLERWTQAAREALAQAQVLAQRMKHQAIDLPHLWAVLLKDERSLAWRLLEKAGAD------PKALKELQERELARLPKVE 75 (854)
T ss_dssp --CCSCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHCCSSSSHHHHHHHTTSSC------HHHHHHHHHHHHHTSCCCC
T ss_pred CHHHHCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCC------HHHHHHHHHHHHHHCCCCC
T ss_conf 7254399999999999999998599973199999999728884799999985999------9999999999983078888
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 89999999964699999999999999805997788872100124589999940697357788743999378999999761
Q 001788 88 QNVSPGLDPPISNALMAALKRAQAHQRRGCPEQQQQPLLAVKVELEQLIISILDDPSVSRVMREASFSSPAVKATIEQSL 167 (1013)
Q Consensus 88 ~~~~~~~~p~~S~~l~~vL~~A~~~a~~g~~e~~~~~~i~~kve~ehLllalL~d~~~~r~L~~~g~~~~~ik~~i~~~~ 167 (1013)
+. +..|++|+.+.++|++|+.+++. ++++||++ +||++||+++++. . ++...++..+.+.+
T Consensus 76 ~~---~~~~~~S~~~~~vL~~A~~~a~~-----~g~~~I~~----ehlLlall~~~~~--~-----~~~~~~~~~~~~~~ 136 (854)
T 1qvr_A 76 GA---EVGQYLTSRLSGALNRAEGLMEE-----LKDRYVAV----DTLVLALAEATPG--L-----PGLEALKGALKELR 136 (854)
T ss_dssp GG---GTTCEECHHHHHHHHHHHHHHHT-----TTCSSCCH----HHHHHHHHHHSTT--S-----CCHHHHHHHHTSSC
T ss_pred CC---CCCCCCCHHHHHHHHHHHHHHHH-----CCCCEEEH----HHHHHHHHHCCCC--C-----CCHHHHHHHHHHHC
T ss_conf 88---88878787999999999999998-----49957619----9999999841244--4-----78999999998742
Q ss_pred CCCC-CCCCC-CCC---------------CCCCCC--------------CCCCCCCCCCCCCCCCCCCCCC--HHHHHHH
Q ss_conf 5998-88999-999---------------989999--------------9877578943345787545898--1589999
Q 001788 168 NSSC-SVSNS-SPI---------------GLGFRP--------------SSRNLYMNPRLQQAGGVCGGQS--EPEMVVR 214 (1013)
Q Consensus 168 ~~~~-~~~~~-~~~---------------~g~~~p--------------l~r~~k~np~l~~~~~~~vG~~--gktaiv~ 214 (1013)
+... .+.++ ..+ .+.+|| ++++.++|++| +|+| |||++++
T Consensus 137 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL-------~G~pG~GKT~la~ 209 (854)
T 1qvr_A 137 GGRTVQTEHAESTYNALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVL-------IGEPGVGKTAIVE 209 (854)
T ss_dssp SCCSSCSSCCCCCCSHHHHHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEE-------EECTTSCHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEE-------ECCCCCCHHHHHH
T ss_conf 565555434443304599997867877751997556786999999999983589982289-------8599989999999
Q ss_pred HHHHHHHHCCCCCCCCCCEEEEECCC-C-CC--CHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHCCCCCCCCC
Q ss_conf 99999880577633348379981455-4-54--30346888999999998430799956999360258772164467888
Q 001788 215 ESLAKIESKELDGVLKNVQIIRLDKD-F-TC--DKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKWLVEQQVTSFGVP 290 (1013)
Q Consensus 215 ~la~~i~~~~vp~~L~~~~i~~l~~~-~-ag--~rge~e~rl~~l~~~v~~~~~~~~~vIl~idel~~lv~~~~~~~g~~ 290 (1013)
++++++..+++|..|++.+++.++.+ + +| |+|+++.+++.+++.+... ++++||||||+|++.+++..
T Consensus 210 ~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~---~~~~iL~IDEi~~l~~~~~~----- 281 (854)
T 1qvr_A 210 GLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQS---QGEVILFIDELHTVVGAGKA----- 281 (854)
T ss_dssp HHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTT---CSSEEEEECCC--------------
T ss_pred HHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHHC---CCCEEEEEECHHHHHCCCCC-----
T ss_conf 9999976079843315986999605775336764328999999999999966---99859999667877236786-----
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCC-------C
Q ss_conf 987503345579999999998775323899855899825989998744139999888997045316799999-------9
Q 001788 291 NSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATCETYLRCQVYHPSMENDWDLQAVPIAAKTPLS-------G 363 (1013)
Q Consensus 291 ~~~~~~~~~~~~~~~V~e~~~llkp~~~~~g~~~~IGatT~~~Y~k~~~~dpale~~~rfq~v~V~e~p~~~-------g 363 (1013)
.+.. ++.|+|++.+ .+|.+++||+||+.+|++ ++.+|+| .+||+.|.|++ |+.+ +
T Consensus 282 ---------~g~~----~~~~~L~~~l-~~~~i~~I~at~~~~~~~-~~~d~aL--~rRf~~i~l~~-p~~~e~~~iL~~ 343 (854)
T 1qvr_A 282 ---------EGAV----DAGNMLKPAL-ARGELRLIGATTLDEYRE-IEKDPAL--ERRFQPVYVDE-PTVEETISILRG 343 (854)
T ss_dssp -----------------------HHHH-HTTCCCEEEEECHHHHHH-HTTCTTT--CSCCCCEEECC-CCHHHHHHHHHH
T ss_pred ---------CCHH----HHHHHHHHHH-HCCCEEEEEECCCHHHHH-HCCCHHH--HHCCCEEEECC-CCHHHHHHHHHH
T ss_conf ---------5319----9999999998-279849999568267765-0368889--82771577189-799999999986
Q ss_pred CCCCCCC-CC--CCCHHHHHHCCCCCCCHHCCCCCCCCCCCCCCH---HHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8664456-78--872246520366100000001588989876760---1221-----21278778899999988565421
Q 001788 364 MFPRLGS-NG--ILSSSVESLSPLKSAFQTTAAALPRRVSENLDP---ARRM-----SCCRQCLQNYEQELAKLSKEFEK 432 (1013)
Q Consensus 364 l~~~~e~-h~--i~d~~~~~~v~~~~~s~~~~~~~r~~pd~aid~---~~~~-----~~~~~~~~~~e~e~~~i~~~~~~ 432 (1013)
+..+|+. |+ +.+.++..++ .++.+|+. ++++|++++|. +++. .++|.+++.+++.+.++..+.++
T Consensus 344 ~~~~~~~~~~~~i~~~al~~~~---~ls~r~i~-~~~lp~kai~lldea~a~~~~~~~~~p~~l~~~~~~~~~~~~~~~~ 419 (854)
T 1qvr_A 344 LKEKYEVHHGVRISDSAIIAAA---TLSHRYIT-ERRLPDKAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREA 419 (854)
T ss_dssp HHHHHHHHTTCEECHHHHHHHH---HHHHHHCC-SSCTHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHH---HHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 4666654268888889999999---98752224-4558499999999999998761367965699999999999999999
Q ss_pred CCCCHHHHHCCCCCHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12100011015873688853014899960122101214667989999999999998632169999999888644457877
Q 001788 433 SSSEVKSEVARPLLPQWLHNAKAHDGDDKTAEQTENKDQDLIWKQKSQELQKKWNDTCLNQHPNFHPSSLGHERIVPVPL 512 (1013)
Q Consensus 433 ~~~~~~~~~~~~~lp~wlq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kw~~~c~~lh~~~~~~~~~~~~~~~~~~ 512 (1013)
..... .......+.. ...++..+..++..+..+|...|..++.-+... ..+.
T Consensus 420 ~~~~~-~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---- 471 (854)
T 1qvr_A 420 LKKEK-DPDSQERLKA-------------------IEAEIAKLTEEIAKLRAEWEREREILRKLREAQ----HRLD---- 471 (854)
T ss_dssp HSSCS-SHHHHSCTHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH----
T ss_pred HHHCC-CCCCHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH----
T ss_conf 98440-3234999999-------------------999999999999999999999999999999999----9999----
Q ss_pred CCCCC-CCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHCCC-CCCCCCEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 64555-542211138998011001134654445678778840110049-9999703200247555567898767742210
Q 001788 513 SMTGL-YNSNLLARQPFQPKVQLNRNLGDTLQLNSNMVSSQPAERAVS-PLNSPVRTDLVLGRSKVLESAPEKTHIEPVK 590 (1013)
Q Consensus 513 s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~v~tdl~lg~~~~s~~~~~~~~~~~i~ 590 (1013)
.. .......+. + +......++|..++.++..+..... ... .+.. ...+..+++.
T Consensus 472 ---~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~----------~~~v~~~~l~ 527 (854)
T 1qvr_A 472 ---EVRREIELAERQ-Y------DLNRAAELRYGELPKLEAEVEALSEKLRG----ARFV----------RLEVTEEDIA 527 (854)
T ss_dssp ---HHHHHHHHHTTT-T------CHHHHHHHHTTHHHHHHHHHHHHHHHSSS----CSSC----------CSEECHHHHH
T ss_pred ---HHHHHHHHHHHC-C------CHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCC----------CCCCCHHHHH
T ss_conf ---876558887752-2------67778887652468899999998753112----4445----------5776999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCEEE
Q ss_conf 11234458899875545445658899998899999999850346608999999999998563169-98899999980499
Q 001788 591 DFLGCISSEPPQNKLHESQNDQLQKPLDPDSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLGNG-KRRGAGSKGDMWLL 669 (1013)
Q Consensus 591 ~~~s~~t~~p~~~~~~~~~~~~~~~~~d~e~l~~l~~~L~~~ViGQ~~ai~~I~~ai~~~r~g~~-~~~p~~sk~~~~lL 669 (1013)
.+++.|+++|+.++.. .+.+.+..+.+.|.++|+||+.++..+..++.+.+.|+. +++|.+ ++|
T Consensus 528 ~~v~~~~~ip~~~~~~----------~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~-----~vL 592 (854)
T 1qvr_A 528 EIVSRWTGIPVSKLLE----------GEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIG-----SFL 592 (854)
T ss_dssp HHHHTTSSCHHHHTTC----------CHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSE-----EEE
T ss_pred HHHHHHHCCCHHHHCH----------HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCE-----EEE
T ss_conf 9999885988475367----------7999998799887411678388999999999999626677888850-----799
Q ss_pred EECCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCC--------CCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 7436887533599999999429999635309988889--------98543446430336999987099789999278888
Q 001788 670 FMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHE--------EPEVRVRGKTALDKIGEAVKRNPFSVILLEDIDEA 741 (1013)
Q Consensus 670 f~Gp~GvGKt~lAr~LA~~l~~~~~~~i~id~s~~~~--------~~~~g~~g~~~~~~L~eai~~~p~~VIllDEIeka 741 (1013)
|+||+|||||++|++|++.+++...+|+.++|+++.. +.++||+|++.++.++++++.+|++||||||||++
T Consensus 593 l~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l 672 (854)
T 1qvr_A 593 FLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKA 672 (854)
T ss_dssp EBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHHCSSEEEEESSGGGS
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCEEEEECHHCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCCC
T ss_conf 87999987999999999984488885799721210323478887289998867365655999998389908999251006
Q ss_pred CHHHHHHHHHHHHCCEEECCCCEEEECCCEEEEEECCCCCCCHHHCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCC
Q ss_conf 99999999999870607648990753396399993289982100002465213565431012013567631244322334
Q 001788 742 DMVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRA 821 (1013)
Q Consensus 742 ~~~vq~~Ll~~le~G~~~d~~G~~vd~~~~IiI~TSn~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~ 821 (1013)
++++|+.|++++++|++++..|+.++++|++||+|||.+...+...... + +
T Consensus 673 ~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~-----~---------------------~--- 723 (854)
T 1qvr_A 673 HPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQK-----G---------------------W--- 723 (854)
T ss_dssp CHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHT-----T---------------------C---
T ss_pred CHHHHHHHHHHHCCCCEECCCCCEECCCCEEEEEECCCCHHHHHHHCCC-----C---------------------C---
T ss_conf 9999999999861580477998774257769999568676878652135-----6---------------------4---
Q ss_pred CCHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEC
Q ss_conf 51035320266434468886432011101599989999999854421000121111246899999906487310102332
Q 001788 822 SWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVF 901 (1013)
Q Consensus 822 ~~~~~~~~~~~~~k~~~~~~~~DLn~~~~~~~~~~~~~~~~d~~~e~~~e~~~~~~~~~~~~~~~f~~ell~rid~iv~F 901 (1013)
.+.++...+ .. .+ . +.|+|+|++|+|.++.|
T Consensus 724 -------------------~~~~l~~~v-----------------~~-----~~-~-------~~f~~~l~~Rl~~~i~~ 754 (854)
T 1qvr_A 724 -------------------PYERIRDEV-----------------FK-----VL-Q-------QHFRPEFLNRLDEIVVF 754 (854)
T ss_dssp -------------------CHHHHHHHH-----------------HH-----HH-H-------TTSCHHHHHTCSBCCBC
T ss_pred -------------------CHHHHHHHH-----------------HH-----HH-H-------HHCCHHHHHHCCEEEEC
T ss_conf -------------------069999999-----------------99-----99-8-------60899999745837748
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999943599999999999998750699640328998999981998---99379999999997679999997189998
Q 001788 902 KPVDFGRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLVGGVW---LGRTGLEDWTEKVLVPSLHQLKLRLPNNA 975 (1013)
Q Consensus 902 ~pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~~~~~---~gar~l~~~ie~~l~~~l~~~~~~~~~~~ 975 (1013)
.|++.+++..|+..++.++..++...++.+.++++++++|+.++| .|+|+|+++|++.+..++++.++......
T Consensus 755 ~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~~~~~~~ 831 (854)
T 1qvr_A 755 RPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKE 831 (854)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHHHHTSSCS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99799999999999999999999857965988899999999809897888178999999999999999998286789
No 2
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=652.48 Aligned_cols=674 Identities=20% Similarity=0.255 Sum_probs=540.8
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 54211599999999999999971999888999999980899808999999709999954568999999999811067766
Q 001788 8 IQQTLTPEAASVLNHSIAEASRRNHGQTTPLHVAATLLASPSGYLRQACIKSHPNSSHPLQCRALELCFSVALERLPTAQ 87 (1013)
Q Consensus 8 ~~~~~T~~a~~aL~~A~~~A~~~~h~~itp~HLl~aLL~~~~gll~~~l~~~~~~~~~~~~~~~L~~~~~~~L~r~p~~~ 87 (1013)
|.++||++++++|..|+++|++++|++|+|+|||+|||.+++|++..++.++++| ...++..+...+.+.|...
T Consensus 2 m~~~~t~~a~~~l~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~~gvd------~~~l~~~l~~~l~~~~~~~ 75 (758)
T 3pxi_A 2 MFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLG------SEKIQKEVESLIGRGQEMS 75 (758)
T ss_dssp -CCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHHHHTCC------HHHHHHHHHTTSCCCCTTC
T ss_pred CHHHHCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCC------HHHHHHHHHHHHCCCCCCC
T ss_conf 5465689999999999999998398942499999998744575799999983999------9999999998735477777
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHCCCCC--HHHHHHHCCCCHHHHHHHHHH
Q ss_conf 899999999646999999999999998059977888721001245899999406973--577887439993789999997
Q 001788 88 QNVSPGLDPPISNALMAALKRAQAHQRRGCPEQQQQPLLAVKVELEQLIISILDDPS--VSRVMREASFSSPAVKATIEQ 165 (1013)
Q Consensus 88 ~~~~~~~~p~~S~~l~~vL~~A~~~a~~g~~e~~~~~~i~~kve~ehLllalL~d~~--~~r~L~~~g~~~~~ik~~i~~ 165 (1013)
..|++|+.+.++|++|+.++++ ++++||++ +|||+||+++++ ..++|.++|++.+.++..+.+
T Consensus 76 ------~~~~~s~~~~~vl~~A~~~A~~-----~~~~~I~~----ehlLlall~~~~~~a~~~L~~~gv~~~~l~~~i~~ 140 (758)
T 3pxi_A 76 ------QTIHYTPRAKKVIELSMDEARK-----LGHSYVGT----EHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQ 140 (758)
T ss_dssp ------SSCEECHHHHHHHHHHHHHHHT-----TTCSSBCH----HHHHHHHHHTCCSHHHHHHHHTTCCHHHHHHHHHT
T ss_pred ------CCCCCCHHHHHHHHHHHHHHHH-----CCCCCCCH----HHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH
T ss_conf ------8888798999999999999998-----59994269----99999997257767889998839999999999999
Q ss_pred HHCCCCCCC-----CC-------CCC---------CCCCCC--------------CCCCCCCCCCCCCCCCCCCCCC--H
Q ss_conf 615998889-----99-------999---------989999--------------9877578943345787545898--1
Q 001788 166 SLNSSCSVS-----NS-------SPI---------GLGFRP--------------SSRNLYMNPRLQQAGGVCGGQS--E 208 (1013)
Q Consensus 166 ~~~~~~~~~-----~~-------~~~---------~g~~~p--------------l~r~~k~np~l~~~~~~~vG~~--g 208 (1013)
.++.+.... .+ ..| .+++|| ++|+.++|++| +|+| |
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL-------~G~pGtG 213 (758)
T 3pxi_A 141 LLGSNETGSSAAGTNSNANTPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVL-------IGEPGVG 213 (758)
T ss_dssp TCCCCCTTC-----CCSTHHHHHHSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEE-------ESCTTTT
T ss_pred HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCEEE-------ECCCCCC
T ss_conf 846776665555566510266899999999998861898876486699999999984778897589-------8999989
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHCCCCCCC
Q ss_conf 58999999999880577633348379981455454303468889999999984307999569993602587721644678
Q 001788 209 PEMVVRESLAKIESKELDGVLKNVQIIRLDKDFTCDKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKWLVEQQVTSFG 288 (1013)
Q Consensus 209 ktaiv~~la~~i~~~~vp~~L~~~~i~~l~~~~ag~rge~e~rl~~l~~~v~~~~~~~~~vIl~idel~~lv~~~~~~~g 288 (1013)
||++++++|+++..+++|..+.+.+++.++. -..|+|+||.+++.++..++. .++.||||| +.
T Consensus 214 KT~la~~la~~l~~~~~p~~l~~~~~~~~~~-g~~~~G~~e~~l~~~~~~~~~----~~~~iLfiD--------~~---- 276 (758)
T 3pxi_A 214 KTAIAEGLAQQIINNEVPEILRDKRVMTLDM-GTKYRGEFEDRLKKVMDEIRQ----AGNIILFID--------AA---- 276 (758)
T ss_dssp THHHHHHHHHHHHSSCSCTTTSSCCEECC-----------CTTHHHHHHHHHT----CCCCEEEEC--------C-----
T ss_pred HHHHHHHHHHHHHCCCCCHHHCCCEEEEECC-CCCCCCHHHHHHHHHHHHHHH----CCCEEEEEC--------CC----
T ss_conf 9999999999975278972324886999516-644354589999999999985----599799986--------86----
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCC------
Q ss_conf 88987503345579999999998775323899855899825989998744139999888997045316799999------
Q 001788 289 VPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATCETYLRCQVYHPSMENDWDLQAVPIAAKTPLS------ 362 (1013)
Q Consensus 289 ~~~~~~~~~~~~~~~~~V~e~~~llkp~~~~~g~~~~IGatT~~~Y~k~~~~dpale~~~rfq~v~V~e~p~~~------ 362 (1013)
+ ++.++|++.+ .+|.++|||+||..+|+++++.||+| .+||+.|.|++ |+.+
T Consensus 277 --------------~----~~~~~L~~~l-~~~~v~~I~at~~~~~~~~~~~d~al--~rRf~~i~v~~-p~~~~~~~il 334 (758)
T 3pxi_A 277 --------------I----DASNILKPSL-ARGELQCIGATTLDEYRKYIEKDAAL--ERRFQPIQVDQ-PSVDESIQIL 334 (758)
T ss_dssp -------------------------CCCT-TSSSCEEEEECCTTTTHHHHTTCSHH--HHSEEEEECCC-CCHHHHHHHH
T ss_pred --------------H----HHHHHHHHHH-HCCCEEEEECCCHHHHHHHHHCCHHH--HHHCCEEEECC-CCHHHHHHHH
T ss_conf --------------6----5999889998-65987999678838888876245999--96284788389-9999999999
Q ss_pred -CCCCCCCC-CC--CCCHHHHHHCCCCCCCHHCCCCCCCCCCCCCCHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Q ss_conf -98664456-78--8722465203661000000015889898767601221--------212787788999999885654
Q 001788 363 -GMFPRLGS-NG--ILSSSVESLSPLKSAFQTTAAALPRRVSENLDPARRM--------SCCRQCLQNYEQELAKLSKEF 430 (1013)
Q Consensus 363 -gl~~~~e~-h~--i~d~~~~~~v~~~~~s~~~~~~~r~~pd~aid~~~~~--------~~~~~~~~~~e~e~~~i~~~~ 430 (1013)
++..+|+. |+ +.+.++..++ .++.+|++ ++++|++++|..+.. ...|.+++.+++++.++..+.
T Consensus 335 ~~~~~~~~~~~~~~i~~~al~~~~---~~s~~~i~-~~~~p~~ai~ll~~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~ 410 (758)
T 3pxi_A 335 QGLRDRYEAHHRVSITDDAIEAAV---KLSDRYIS-DRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEK 410 (758)
T ss_dssp HHTTTTSGGGSSCSCCHHHHHHHH---HHHHHSSC-CSCTTHHHHHHHHHHHHHHHHHTTC--CCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHH---HHHHCCCC-CCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 999999998629987879999999---97540056-67697179999999989998622479950466899999999999
Q ss_pred HHCCCCHHHHHCCCCCHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 21121000110158736888530148999601221012146679899999999999986321699999998886444578
Q 001788 431 EKSSSEVKSEVARPLLPQWLHNAKAHDGDDKTAEQTENKDQDLIWKQKSQELQKKWNDTCLNQHPNFHPSSLGHERIVPV 510 (1013)
Q Consensus 431 ~~~~~~~~~~~~~~~lp~wlq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kw~~~c~~lh~~~~~~~~~~~~~~~~ 510 (1013)
+.. ... .+ .+....+..++..+++.........
T Consensus 411 ~~~----------------~~~-~~-------------~~~~~~l~~~~~~~~~~l~~~~~~~----------------- 443 (758)
T 3pxi_A 411 DAA----------------VQS-QE-------------FEKAASLRDTEQRLREQVEDTKKSW----------------- 443 (758)
T ss_dssp HHH----------------HHH-CC-------------SHHHHHHHHHHHHHHHHHHHHHSGG-----------------
T ss_pred HHH----------------HHC-CC-------------HHHHHHHHHHHHHHHHHHHHHHHHH-----------------
T ss_conf 998----------------847-47-------------9999999999999999999999999-----------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 77645555422111389980110011346544456787788401100499999703200247555567898767742210
Q 001788 511 PLSMTGLYNSNLLARQPFQPKVQLNRNLGDTLQLNSNMVSSQPAERAVSPLNSPVRTDLVLGRSKVLESAPEKTHIEPVK 590 (1013)
Q Consensus 511 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~tdl~lg~~~~s~~~~~~~~~~~i~ 590 (1013)
... . ... ...++.+++.
T Consensus 444 ------------------~~~----------------------~----~~~-------------------~~~v~~~~i~ 460 (758)
T 3pxi_A 444 ------------------KEK----------------------Q----GQE-------------------NSEVTVDDIA 460 (758)
T ss_dssp ------------------GHH----------------------H----HCC----------------------CCTHHHH
T ss_pred ------------------HHH----------------------H----CCC-------------------CCCCCHHHHH
T ss_conf ------------------875----------------------4----136-------------------7611799999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCEEE
Q ss_conf 11234458899875545445658899998899999999850346608999999999998563169-98899999980499
Q 001788 591 DFLGCISSEPPQNKLHESQNDQLQKPLDPDSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLGNG-KRRGAGSKGDMWLL 669 (1013)
Q Consensus 591 ~~~s~~t~~p~~~~~~~~~~~~~~~~~d~e~l~~l~~~L~~~ViGQ~~ai~~I~~ai~~~r~g~~-~~~p~~sk~~~~lL 669 (1013)
.+++.|+++|..++.. .+.+.+..+.+.|.++|+||++++..+..++.+.+.+.. +.+|.+ ++|
T Consensus 461 ~~v~~~~~ip~~~~~~----------~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~-----~~L 525 (758)
T 3pxi_A 461 MVVSSWTGVPVSKIAQ----------TETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIG-----SFI 525 (758)
T ss_dssp HHHHTTC-------CH----------HHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSE-----EEE
T ss_pred HHHHHHHCCCHHHHHH----------HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCE-----EEE
T ss_conf 9999885898587617----------7999999999998386817399999999999999704678899834-----999
Q ss_pred EECCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH
Q ss_conf 74368875335999999994299996353099888899854344643033699998709978999927888899999999
Q 001788 670 FMGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKRNPFSVILLEDIDEADMVVRGNI 749 (1013)
Q Consensus 670 f~Gp~GvGKt~lAr~LA~~l~~~~~~~i~id~s~~~~~~~~g~~g~~~~~~L~eai~~~p~~VIllDEIeka~~~vq~~L 749 (1013)
|+||+|||||++|++||+.++++..+|+++||++|.+.. ... ++.++++++..|++||||||||++++++|+.|
T Consensus 526 l~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~----~~~--~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~L 599 (758)
T 3pxi_A 526 FLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKH----STS--GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNIL 599 (758)
T ss_dssp EESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSC----CCC-----CHHHHHHCSSSEEEEECGGGSCHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCEEEEECHHCCCCC----CCC--CCHHHHHHHHCCCEEEEEECCCCCCHHHHHHH
T ss_conf 988999879999999999855997666997120026643----445--64145999949983999957100599999999
Q ss_pred HHHHHCCEEECCCCEEEECCCEEEEEECCCCCCCHHHCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 99987060764899075339639999328998210000246521356543101201356763124432233451035320
Q 001788 750 KRAMERGRLVDSYGREISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEER 829 (1013)
Q Consensus 750 l~~le~G~~~d~~G~~vd~~~~IiI~TSn~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~ 829 (1013)
++++++|++++..|+.+++.|++||+|||.+........
T Consensus 600 l~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~----------------------------------------- 638 (758)
T 3pxi_A 600 LQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVM----------------------------------------- 638 (758)
T ss_dssp HHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHH-----------------------------------------
T ss_pred HHHHCCCEEECCCCCEECCCCEEEEEECCCCHHHHHHHH-----------------------------------------
T ss_conf 998546768758997843677699993788713379999-----------------------------------------
Q ss_pred CCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEECCCCCHHHH
Q ss_conf 26643446888643201110159998999999985442100012111124689999990648731010233299994359
Q 001788 830 STKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRI 909 (1013)
Q Consensus 830 ~~~~~k~~~~~~~~DLn~~~~~~~~~~~~~~~~d~~~e~~~e~~~~~~~~~~~~~~~f~~ell~rid~iv~F~pl~~~~l 909 (1013)
...+ +.|+|+|++|+|.+|.|.|++.+++
T Consensus 639 --~~~~-------------------------------------------------~~f~p~l~~Rl~~~i~~~~l~~~~~ 667 (758)
T 3pxi_A 639 --GELK-------------------------------------------------RAFRPEFINRIDEIIVFHSLEKKHL 667 (758)
T ss_dssp --HHHH-------------------------------------------------HHSCHHHHTTSSEEEECC--CHHHH
T ss_pred --HHHH-------------------------------------------------HHCCHHHHHHCCEEEECCCCCHHHH
T ss_conf --9999-------------------------------------------------6289999944785996599799999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHC--CC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999999987506996403289989999819--98-99379999999997679999997189998
Q 001788 910 RRDVTNAITKKFSSIIGDALSIEILDEALEKLVGG--VW-LGRTGLEDWTEKVLVPSLHQLKLRLPNNA 975 (1013)
Q Consensus 910 ~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~~~--~~-~gar~l~~~ie~~l~~~l~~~~~~~~~~~ 975 (1013)
..|+...+.++..++...++.+.++++++++|+.. .| +|+|+|+++|++.+.+++++.++......
T Consensus 668 ~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~~~~l~~~~~~ 736 (758)
T 3pxi_A 668 TEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIHK 736 (758)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHHHHHHTTCSCS
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 999999999999999967995997999999999828997789707999999999999999998087899
No 3
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=1.00 E-value=1 Score=621.87 Aligned_cols=654 Identities=19% Similarity=0.234 Sum_probs=525.8
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC-CCCCCCCC
Q ss_conf 15999999999999999719998889999999808998089999997099999545689999999998110-67766899
Q 001788 12 LTPEAASVLNHSIAEASRRNHGQTTPLHVAATLLASPSGYLRQACIKSHPNSSHPLQCRALELCFSVALER-LPTAQQNV 90 (1013)
Q Consensus 12 ~T~~a~~aL~~A~~~A~~~~h~~itp~HLl~aLL~~~~gll~~~l~~~~~~~~~~~~~~~L~~~~~~~L~r-~p~~~~~~ 90 (1013)
||++++++|..|+++|++++|++|+|+|||++||+++ .+..++.+++++ ...++..+...+.+ .|...+..
T Consensus 2 ~t~~a~~~l~~A~~~A~~~~h~~i~~eHLLlaLl~~~--~~~~iL~~~gvd------~~~l~~~l~~~l~~~~p~~~~~~ 73 (758)
T 1r6b_X 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNP--SAREALEACSVD------LVALRQELEAFIEQTTPVLPASE 73 (758)
T ss_dssp BCHHHHHHHHHHHHHHHHTTBSEECHHHHHHHHTTSH--HHHHHHHHTTCC------HHHHHHHHHHHHHHHSCBCCCSS
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCC--HHHHHHHHCCCC------HHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 8979999999999999985999740999999997594--799999984999------89999999999833488777766
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHCCCCC--HHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 999999646999999999999998059977888721001245899999406973--577887439993789999997615
Q 001788 91 SPGLDPPISNALMAALKRAQAHQRRGCPEQQQQPLLAVKVELEQLIISILDDPS--VSRVMREASFSSPAVKATIEQSLN 168 (1013)
Q Consensus 91 ~~~~~p~~S~~l~~vL~~A~~~a~~g~~e~~~~~~i~~kve~ehLllalL~d~~--~~r~L~~~g~~~~~ik~~i~~~~~ 168 (1013)
....|++|+.+.++|++|+.+++. ++++||++ +|||+||++++. ..++|.++|++.+.+...+.+...
T Consensus 74 -~~~~~~~s~~~~~vl~~A~~~a~~-----~~~~~I~~----ehlLlall~~~~~~a~~~L~~~gi~~~~l~~~i~~~~~ 143 (758)
T 1r6b_X 74 -EERDTQPTLSFQRVLQRAVFHVQS-----SGRNEVTG----ANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTR 143 (758)
T ss_dssp -SCCCCEECHHHHHHHHHHHHHHHH-----HTCSSBCH----HHHHHHHTTCTTCHHHHHHHHTTCCHHHHHHHHHTC--
T ss_pred -CCCCCCCCHHHHHHHHHHHHHHHH-----CCCCEEEH----HHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHC
T ss_conf -667778598999999999999998-----39977608----99999986166425788888719988999999987321
Q ss_pred CC---------CC-C-CC---C----CCC---------CCCCCC--------------CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99---------88-8-99---9----999---------989999--------------9877578943345787545898
Q 001788 169 SS---------CS-V-SN---S----SPI---------GLGFRP--------------SSRNLYMNPRLQQAGGVCGGQS 207 (1013)
Q Consensus 169 ~~---------~~-~-~~---~----~~~---------~g~~~p--------------l~r~~k~np~l~~~~~~~vG~~ 207 (1013)
.. .. . .. . ..+ .+.+|| ++++.++|++| +|+|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL-------~G~~ 216 (758)
T 1r6b_X 144 KDEPTQSSDPGSQPNSEEQAGGEERLENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLL-------VGES 216 (758)
T ss_dssp -------------------------CCSSSCBHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEE-------ECCT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEE-------ECCC
T ss_conf 123433556554445556654313799986757999854999876687999999999985467888079-------8499
Q ss_pred --HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC-C-CC--CHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHH
Q ss_conf --158999999999880577633348379981455-4-54--30346888999999998430799956999360258772
Q 001788 208 --EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-F-TC--DKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKWLVE 281 (1013)
Q Consensus 208 --gktaiv~~la~~i~~~~vp~~L~~~~i~~l~~~-~-ag--~rge~e~rl~~l~~~v~~~~~~~~~vIl~idel~~lv~ 281 (1013)
|||++++++++++..+++|..+.+.+++.++++ + ++ |+|+++.+++.+++.+.. .++.||||||+|++++
T Consensus 217 GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~----~~~~iL~IDEi~~l~~ 292 (758)
T 1r6b_X 217 GVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ----DTNSILFIDEIHTIIG 292 (758)
T ss_dssp TSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSS----SSCEEEEETTTTTTTT
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHCCCEEEEECHHHHHCCCCCCCHHHHHHHHHHHHHHH----CCCEEEEEECHHHHHH
T ss_conf 998999999999999737998454388799975788743655452699999999999996----6984999956688851
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCEEEECCCCCCC
Q ss_conf 16446788898750334557999999999877532389985589982598999874413999988899704531679999
Q 001788 282 QQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATCETYLRCQVYHPSMENDWDLQAVPIAAKTPL 361 (1013)
Q Consensus 282 ~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llkp~~~~~g~~~~IGatT~~~Y~k~~~~dpale~~~rfq~v~V~e~p~~ 361 (1013)
++... .+.. ++.++|++++ .+|++++||+||+.+|.++++.||+| .+||+.|.|++ |+.
T Consensus 293 ~~~~~-------------~~~~----~~~~~L~~~l-~~~~~~~I~at~~~~~~~~~~~d~aL--~~Rf~~i~v~~-p~~ 351 (758)
T 1r6b_X 293 AGAAS-------------GGQV----DAANLIKPLL-SSGKIRVIGSTTYQEFSNIFEKDRAL--ARRFQKIDITE-PSI 351 (758)
T ss_dssp SCCSS-------------SCHH----HHHHHHSSCS-SSCCCEEEEEECHHHHHCCCCCTTSS--GGGEEEEECCC-CCH
T ss_pred CCCCC-------------CCHH----HHHHHHHHHH-HCCCEEEEEEECCHHHHHHHHCCHHH--HHCCEEEECCC-CCH
T ss_conf 67877-------------6608----8999999998-57986999984746775555429898--84766888279-898
Q ss_pred C-------CCCCCCCC-CC--CCCHHHHHHCCCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9-------98664456-78--87224652036610000000158898987676012212127877889999998856542
Q 001788 362 S-------GMFPRLGS-NG--ILSSSVESLSPLKSAFQTTAAALPRRVSENLDPARRMSCCRQCLQNYEQELAKLSKEFE 431 (1013)
Q Consensus 362 ~-------gl~~~~e~-h~--i~d~~~~~~v~~~~~s~~~~~~~r~~pd~aid~~~~~~~~~~~~~~~e~e~~~i~~~~~ 431 (1013)
+ ++..+|+. |+ +.+.++..++ .++.+|+. ++++|++++|..+.
T Consensus 352 ~e~~~il~~l~~~~~~~~~v~~~~~al~~~~---~~s~~~i~-~~~lp~~~i~lld~----------------------- 404 (758)
T 1r6b_X 352 EETVQIINGLKPKYEAHHDVRYTAKAVRAAV---ELAVKYIN-DRHLPDKAIDVIDE----------------------- 404 (758)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH---HHHHHHCT-TSCTTHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH---HHHHHHCC-CCCCCHHHHHHHHH-----------------------
T ss_conf 9999999999999987338987999999999---98655321-54585078899999-----------------------
Q ss_pred HCCCCHHHHHCCCCCHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11210001101587368885301489996012210121466798999999999999863216999999988864445787
Q 001788 432 KSSSEVKSEVARPLLPQWLHNAKAHDGDDKTAEQTENKDQDLIWKQKSQELQKKWNDTCLNQHPNFHPSSLGHERIVPVP 511 (1013)
Q Consensus 432 ~~~~~~~~~~~~~~lp~wlq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kw~~~c~~lh~~~~~~~~~~~~~~~~~ 511 (1013)
.|....
T Consensus 405 ---------------------------------------------------------a~~~~~----------------- 410 (758)
T 1r6b_X 405 ---------------------------------------------------------AGARAR----------------- 410 (758)
T ss_dssp ---------------------------------------------------------HHHHHH-----------------
T ss_pred ---------------------------------------------------------HHHHHH-----------------
T ss_conf ---------------------------------------------------------999974-----------------
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 76455554221113899801100113465444567877884011004999997032002475555678987677422101
Q 001788 512 LSMTGLYNSNLLARQPFQPKVQLNRNLGDTLQLNSNMVSSQPAERAVSPLNSPVRTDLVLGRSKVLESAPEKTHIEPVKD 591 (1013)
Q Consensus 512 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~tdl~lg~~~~s~~~~~~~~~~~i~~ 591 (1013)
+.+ . .. . ...++.++++.
T Consensus 411 ----------~~~------~----------------------~~---~---------------------~~~v~~~di~~ 428 (758)
T 1r6b_X 411 ----------LMP------V----------------------SK---R---------------------KKTVNVADIES 428 (758)
T ss_dssp ----------HSS------S----------------------CC---C---------------------CCSCCHHHHHH
T ss_pred ----------CCC------C----------------------CC---C---------------------CCCCCHHHHHH
T ss_conf ----------263------1----------------------13---6---------------------88548999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCEEEE
Q ss_conf 1234458899875545445658899998899999999850346608999999999998563169-988999999804997
Q 001788 592 FLGCISSEPPQNKLHESQNDQLQKPLDPDSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLGNG-KRRGAGSKGDMWLLF 670 (1013)
Q Consensus 592 ~~s~~t~~p~~~~~~~~~~~~~~~~~d~e~l~~l~~~L~~~ViGQ~~ai~~I~~ai~~~r~g~~-~~~p~~sk~~~~lLf 670 (1013)
+++.|+++|..++.. .+.+.+..+.+.|.+.|+||++++..+..++...+.|+. +++|.+ ++||
T Consensus 429 ~~~~~~~ip~~~~~~----------~~~~~l~~l~~~l~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~-----~~ll 493 (758)
T 1r6b_X 429 VVARIARIPEKSVSQ----------SDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVG-----SFLF 493 (758)
T ss_dssp HHHHHSCCCCCCSSS----------SHHHHHHHHHHHHTTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSE-----EEEE
T ss_pred HHHHHCCCCCCCCCH----------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCE-----EEEE
T ss_conf 998750899644556----------5899999999999865067899999999999999644677888765-----8998
Q ss_pred ECCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCC--------CCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 436887533599999999429999635309988889--------985434464303369999870997899992788889
Q 001788 671 MGPDRVGKKKMASALSELVSGASPIMIPLGPRRDHE--------EPEVRVRGKTALDKIGEAVKRNPFSVILLEDIDEAD 742 (1013)
Q Consensus 671 ~Gp~GvGKt~lAr~LA~~l~~~~~~~i~id~s~~~~--------~~~~g~~g~~~~~~L~eai~~~p~~VIllDEIeka~ 742 (1013)
+||+|||||++|++|++.+. .++++++|++|.+ +.++||+|++.++.+++++++.|++||||||||+++
T Consensus 494 ~G~~GtGKT~la~~la~~l~---~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~ 570 (758)
T 1r6b_X 494 AGPTGVGKTEVTVQLSKALG---IELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH 570 (758)
T ss_dssp ECSTTSSHHHHHHHHHHHHT---CEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSC
T ss_pred ECCCCCCHHHHHHHHHHHHC---CCEEEEECHHHCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 78999769999999999845---777998614521044576643899877675655248999995799489990821039
Q ss_pred HHHHHHHHHHHHCCEEECCCCEEEECCCEEEEEECCCCCCCHHHCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 99999999998706076489907533963999932899821000024652135654310120135676312443223345
Q 001788 743 MVVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRAS 822 (1013)
Q Consensus 743 ~~vq~~Ll~~le~G~~~d~~G~~vd~~~~IiI~TSn~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~ 822 (1013)
+++++.|+++|++|++++..|+.++++|++||+|||.+...+.....++ . ...
T Consensus 571 ~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~---------------~----------~~~-- 623 (758)
T 1r6b_X 571 PDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGL---------------I----------HQD-- 623 (758)
T ss_dssp HHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC----------------------------------------
T ss_pred HHHHHHHHHHHCCCEEECCCCCEEECCCEEEEEECCCCHHHHHHCCCCC---------------C----------CCC--
T ss_conf 8999999998647579828997772587389982475524443224676---------------5----------410--
Q ss_pred CHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEECC
Q ss_conf 10353202664344688864320111015999899999998544210001211112468999999064873101023329
Q 001788 823 WLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFK 902 (1013)
Q Consensus 823 ~~~~~~~~~~~~k~~~~~~~~DLn~~~~~~~~~~~~~~~~d~~~e~~~e~~~~~~~~~~~~~~~f~~ell~rid~iv~F~ 902 (1013)
... . +.. .+.. .|.|+|++|+|.+|.|.
T Consensus 624 -----------~~~-------~---------------------~~~-----~~~~--------~~~~~l~~R~~~~i~~~ 651 (758)
T 1r6b_X 624 -----------NST-------D---------------------AME-----EIKK--------IFTPEFRNRLDNIIWFD 651 (758)
T ss_dssp -------------------------------------------CHH-----HHHH--------HSCHHHHTTCSEEEECC
T ss_pred -----------HHH-------H---------------------HHH-----HHHH--------HCCHHHHHHCCCCEEEC
T ss_conf -----------678-------8---------------------999-----9987--------55999996378404647
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHCCCC---CHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999435999999999999987506996403289989999819989---9379999999997679999997189998
Q 001788 903 PVDFGRIRRDVTNAITKKFSSIIGDALSIEILDEALEKLVGGVWL---GRTGLEDWTEKVLVPSLHQLKLRLPNNA 975 (1013)
Q Consensus 903 pl~~~~l~~ii~~~l~~~~~~~~~~~~~L~id~~a~~~L~~~~~~---gar~l~~~ie~~l~~~l~~~~~~~~~~~ 975 (1013)
|++.+++..|+...+.++..++...++.+.++++++++|+.++|. |+|++++++++.+.+++++.++......
T Consensus 652 ~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~~l~~~~~~ 727 (758)
T 1r6b_X 652 HLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVD 727 (758)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHHHHHSTTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9999999999999999999999978938996899999999808896789658999999998999999997186789
No 4
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=370.90 Aligned_cols=351 Identities=17% Similarity=0.213 Sum_probs=295.5
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 54211599999999999999971999888999999980899808999999709999954568999999999811067766
Q 001788 8 IQQTLTPEAASVLNHSIAEASRRNHGQTTPLHVAATLLASPSGYLRQACIKSHPNSSHPLQCRALELCFSVALERLPTAQ 87 (1013)
Q Consensus 8 ~~~~~T~~a~~aL~~A~~~A~~~~h~~itp~HLl~aLL~~~~gll~~~l~~~~~~~~~~~~~~~L~~~~~~~L~r~p~~~ 87 (1013)
+..+||++++++|..|+.+|++++|.+|+|+|||++||.+++|++..+|.++++| ...++..+...+.+.|...
T Consensus 2 m~~~ft~~a~~al~~A~~~A~~~~h~~v~~eHLLlaLl~~~~~~~~~iL~~~gvd------~~~l~~~l~~~l~~~~~~~ 75 (468)
T 3pxg_A 2 MFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLG------SEKIQKEVESLIGRGQEMS 75 (468)
T ss_dssp -CCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHHHHTCC------HHHHHHHHHTTSCCCCTTC
T ss_pred CCHHHCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCC------HHHHHHHHHHHHCCCCCCC
T ss_conf 6043489999999999999998399953599999999744585899999984999------9999999998845367777
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHCCCCC-H-HHHHHHCCCCHHHHHHHHHH
Q ss_conf 899999999646999999999999998059977888721001245899999406973-5-77887439993789999997
Q 001788 88 QNVSPGLDPPISNALMAALKRAQAHQRRGCPEQQQQPLLAVKVELEQLIISILDDPS-V-SRVMREASFSSPAVKATIEQ 165 (1013)
Q Consensus 88 ~~~~~~~~p~~S~~l~~vL~~A~~~a~~g~~e~~~~~~i~~kve~ehLllalL~d~~-~-~r~L~~~g~~~~~ik~~i~~ 165 (1013)
..|++|+.+.++|+.|+.++++ ++++||++ +|||+||+++++ . .++|.++|++.+.++..+.+
T Consensus 76 ------~~~~~S~~~~~vL~~A~~~A~~-----~g~~~I~t----eHLLlaLl~~~~~~a~~iL~~~gv~~~~l~~~i~~ 140 (468)
T 3pxg_A 76 ------QTIHYTPRAKKVIELSMDEARK-----LGHSYVGT----EHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQ 140 (468)
T ss_dssp ------SSCEECHHHHHHHHHHHHHHHT-----TTCSSBCH----HHHHHHHHHTCCSHHHHHHHHTTCCHHHHHHHHHT
T ss_pred ------CCCCCCHHHHHHHHHHHHHHHH-----CCCCEECH----HHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH
T ss_conf ------8888898999999999999998-----59981649----99999987166556999998849999999999999
Q ss_pred HHCCCCCC-----CCC-------CCC---------CCCCCC--------------CCCCCCCCCCCCCCCCCCCCCC--H
Q ss_conf 61599888-----999-------999---------989999--------------9877578943345787545898--1
Q 001788 166 SLNSSCSV-----SNS-------SPI---------GLGFRP--------------SSRNLYMNPRLQQAGGVCGGQS--E 208 (1013)
Q Consensus 166 ~~~~~~~~-----~~~-------~~~---------~g~~~p--------------l~r~~k~np~l~~~~~~~vG~~--g 208 (1013)
..+..... ... ..+ .+.+|| ++|+.++|++| +|+| |
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL-------~G~pG~G 213 (468)
T 3pxg_A 141 LLGSNETGSSAAGTNSNANTPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVL-------IGEPGVG 213 (468)
T ss_dssp TCCCCCTTC-----CCSTHHHHHHSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEE-------ESCTTTT
T ss_pred HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEE-------ECCCCCC
T ss_conf 845675444556767766755799999989989864998876684999999999982567787378-------7899988
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHCCCCCCC
Q ss_conf 58999999999880577633348379981455454303468889999999984307999569993602587721644678
Q 001788 209 PEMVVRESLAKIESKELDGVLKNVQIIRLDKDFTCDKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKWLVEQQVTSFG 288 (1013)
Q Consensus 209 ktaiv~~la~~i~~~~vp~~L~~~~i~~l~~~~ag~rge~e~rl~~l~~~v~~~~~~~~~vIl~idel~~lv~~~~~~~g 288 (1013)
||++++++++++..+++|..|.+..++.++.+ +.|+|+|+.+++.+++.++. .++.||||| +.
T Consensus 214 KT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-~~~~g~~e~~~~~~~~~~~~----~~~~iLfiD--------~~---- 276 (468)
T 3pxg_A 214 KTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-TKYRGEFEDRLKKVMDEIRQ----AGNIILFID--------AA---- 276 (468)
T ss_dssp THHHHHHHHHHHHSSCSCTTTSSCCEECC-----------CTTHHHHHHHHHT----CCCCEEEEC--------C-----
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCCEEEEEECC-CCCCCHHHHHHHHHHHHHHH----CCCEEEEEE--------CC----
T ss_conf 99999999999871799766549848996177-66562689999999999995----699699981--------86----
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCC------
Q ss_conf 88987503345579999999998775323899855899825989998744139999888997045316799999------
Q 001788 289 VPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATCETYLRCQVYHPSMENDWDLQAVPIAAKTPLS------ 362 (1013)
Q Consensus 289 ~~~~~~~~~~~~~~~~~V~e~~~llkp~~~~~g~~~~IGatT~~~Y~k~~~~dpale~~~rfq~v~V~e~p~~~------ 362 (1013)
. ++.|+|++.+ .+|.+++||+||..+|+++++.+|+| .+||+.|.|++ |+.+
T Consensus 277 --------------~----~a~~~L~~~L-~~g~v~vI~at~~~e~~~~~~~~~al--~~Rf~~i~v~~-p~~e~~~~iL 334 (468)
T 3pxg_A 277 --------------I----DASNILKPSL-ARGELQCIGATTLDEYRKYIEKDAAL--ERRFQPIQVDQ-PSVDESIQIL 334 (468)
T ss_dssp -------------------------CCCT-TSSSCEEEEECCTTTTHHHHTTCSHH--HHSEEEEECCC-CCHHHHHHHH
T ss_pred --------------H----HHHHHHHHHH-CCCCEEEEECCCHHHHHHHHHCCHHH--HHHCCCCEECC-CCHHHHHHHH
T ss_conf --------------1----5999987765-07987999618879998876247999--97575465389-8999999999
Q ss_pred -CCCCCCCC-CC--CCCHHHHHHCCCCCCCHHCCCCCCCCCCCCCCHHHHH--------HHHHHHHHHHHHHHHHHHHH
Q ss_conf -98664456-78--8722465203661000000015889898767601221--------21278778899999988565
Q 001788 363 -GMFPRLGS-NG--ILSSSVESLSPLKSAFQTTAAALPRRVSENLDPARRM--------SCCRQCLQNYEQELAKLSKE 429 (1013)
Q Consensus 363 -gl~~~~e~-h~--i~d~~~~~~v~~~~~s~~~~~~~r~~pd~aid~~~~~--------~~~~~~~~~~e~e~~~i~~~ 429 (1013)
++..+|+. |+ |.+.++..++ .++.+|+. ++++||+++|..+.. ...|..+..+++++..+..+
T Consensus 335 ~~~~~~~~~~~~~~i~~~al~~l~---~~s~~~~~-~~~lp~~ai~ll~~a~~~~~~~~~~~p~~i~~l~~~i~~l~~~ 409 (468)
T 3pxg_A 335 QGLRDRYEAHHRVSITDDAIEAAV---KLSDRYIS-DRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKE 409 (468)
T ss_dssp HHTTTTSGGGSSCSCCHHHHHHHH---HHHHHSSC-CSCTTHHHHHHHHHHHHHHHHHTTSCCSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHH---HHHHHHHC-CCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 999999998549997999999999---99887752-6769837999999999999740679916799999999999999
No 5
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=1.00 E-value=1 Score=240.35 Aligned_cols=275 Identities=24% Similarity=0.299 Sum_probs=225.5
Q ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCE
Q ss_conf 98899999999850346608999999999998563169-98899999980499743688753359999999942999963
Q 001788 618 DPDSFKRLLKSLMEKVWWQQEAASAVATTVTQCKLGNG-KRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIM 696 (1013)
Q Consensus 618 d~e~l~~l~~~L~~~ViGQ~~ai~~I~~ai~~~r~g~~-~~~p~~sk~~~~lLf~Gp~GvGKt~lAr~LA~~l~~~~~~~ 696 (1013)
+.+.+..+.+.|.+.++||+.+++.+...+...+.++. +.+ +..+++|+||+|+|||.+|++|++.+.....++
T Consensus 4 ~~~~l~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~-----~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 4 EREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNR-----PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp HHHHHHTHHHHHHTTCCSCHHHHHHHHHHHHHHHHTCSCTTS-----CSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCC-----CCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCE
T ss_conf 778999999999625289899999999999998657788899-----862899989999579999999999973887634
Q ss_pred EEECCCCCCC--------CCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEECCCCEEEEC
Q ss_conf 5309988889--------98543446430336999987099789999278888999999999998706076489907533
Q 001788 697 IPLGPRRDHE--------EPEVRVRGKTALDKIGEAVKRNPFSVILLEDIDEADMVVRGNIKRAMERGRLVDSYGREISL 768 (1013)
Q Consensus 697 i~id~s~~~~--------~~~~g~~g~~~~~~L~eai~~~p~~VIllDEIeka~~~vq~~Ll~~le~G~~~d~~G~~vd~ 768 (1013)
+.++|+.+.. +.++++.|+...+.+.+++...+++||||||||++++.+|+.|+++++++.+.+..++.+++
T Consensus 79 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~ 158 (311)
T 4fcw_A 79 IRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDF 158 (311)
T ss_dssp EEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEEC
T ss_pred EEEECCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECHHHCCHHHHHHHHHHHHCCEEECCCCCEEEC
T ss_conf 89606554663228872699986556045506899998599819999573433989999999998459797699977877
Q ss_pred CCEEEEEECCCCCCCHHHCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf 96399993289982100002465213565431012013567631244322334510353202664344688864320111
Q 001788 769 GNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKA 848 (1013)
Q Consensus 769 ~~~IiI~TSn~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~~DLn~~ 848 (1013)
++++||+|||.+.+.+....... .. +-++...
T Consensus 159 ~~~iiI~ttn~~~~~i~~~~~~~---------------------------~~---------------------~~~l~~~ 190 (311)
T 4fcw_A 159 RNTVIIMTSNLGSPLILEGLQKG---------------------------WP---------------------YERIRDE 190 (311)
T ss_dssp TTEEEEEEESTTHHHHHTTTTSC---------------------------CC---------------------SSTHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHCCC---------------------------CC---------------------HHHHHHH
T ss_conf 77589992466879997543146---------------------------64---------------------8999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 01599989999999854421000121111246899999906487310102332999943599999999999998750699
Q 001788 849 ADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVTNAITKKFSSIIGDA 928 (1013)
Q Consensus 849 ~~~~~~~~~~~~~~d~~~e~~~e~~~~~~~~~~~~~~~f~~ell~rid~iv~F~pl~~~~l~~ii~~~l~~~~~~~~~~~ 928 (1013)
+ .. .+. ..|.++|++|++.++.|.|++.+++..|+...+.+....+...+
T Consensus 191 ~-----------------~~-----~~~--------~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~ 240 (311)
T 4fcw_A 191 V-----------------FK-----VLQ--------QHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKR 240 (311)
T ss_dssp T-----------------HH-----HHH--------HHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTT
T ss_pred H-----------------HH-----HHH--------HHCCHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9-----------------99-----998--------75899898247859980789999999999999999999999689
Q ss_pred CCEECCHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 640328998999981998---99379999999997679999997189998
Q 001788 929 LSIEILDEALEKLVGGVW---LGRTGLEDWTEKVLVPSLHQLKLRLPNNA 975 (1013)
Q Consensus 929 ~~L~id~~a~~~L~~~~~---~gar~l~~~ie~~l~~~l~~~~~~~~~~~ 975 (1013)
..+.++++++++|+.++| .+.|.|++++++.+..++++.++.....+
T Consensus 241 ~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~~~~~~~ 290 (311)
T 4fcw_A 241 ISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKE 290 (311)
T ss_dssp CEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHHHHTSSCT
T ss_pred CEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 67971999999999837785678530799999999999999998278999
No 6
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=1.00 E-value=1 Score=217.50 Aligned_cols=281 Identities=15% Similarity=0.144 Sum_probs=182.2
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC-CCC-CCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEE
Q ss_conf 9999999850346608999999999998563169-988-99999980499743688753359999999942999963530
Q 001788 622 FKRLLKSLMEKVWWQQEAASAVATTVTQCKLGNG-KRR-GAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASPIMIPL 699 (1013)
Q Consensus 622 l~~l~~~L~~~ViGQ~~ai~~I~~ai~~~r~g~~-~~~-p~~sk~~~~lLf~Gp~GvGKt~lAr~LA~~l~~~~~~~i~i 699 (1013)
...+.+.|.+.|+||+.+++.+..++........ ... .....+...+||+||||||||.+|++||+.+. .+|+.+
T Consensus 6 ~~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~---~~~~~~ 82 (363)
T 3hws_A 6 PHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD---VPFTMA 82 (363)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT---CCEEEE
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCC---CCEEEE
T ss_conf 99999998746038899999999999999865200111234567998189989999889999999999829---988981
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCC-------CCEEEEEECCCCCCHH--------------HHHHHHHHHHCCEE
Q ss_conf 99888899854344643033699998709-------9789999278888999--------------99999999870607
Q 001788 700 GPRRDHEEPEVRVRGKTALDKIGEAVKRN-------PFSVILLEDIDEADMV--------------VRGNIKRAMERGRL 758 (1013)
Q Consensus 700 d~s~~~~~~~~g~~g~~~~~~L~eai~~~-------p~~VIllDEIeka~~~--------------vq~~Ll~~le~G~~ 758 (1013)
+++.+. ..+|+|++..+.+.+.+... +.+||||||||++++. +|+.|+++|+ |.+
T Consensus 83 ~~~~l~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~le-g~~ 158 (363)
T 3hws_A 83 DATTLT---EAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIE-GTV 158 (363)
T ss_dssp EHHHHT---TCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHH-CC-
T ss_pred CHHHHC---CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHC-CCE
T ss_conf 467731---3322464277899999997435687369968999686663503356533432132899999999853-762
Q ss_pred ---ECCCCEEEECCCEEEEEECCC---------CCCCHHHCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf ---648990753396399993289---------98210000246521356543101201356763124432233451035
Q 001788 759 ---VDSYGREISLGNVIFILTADW---------LPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDE 826 (1013)
Q Consensus 759 ---~d~~G~~vd~~~~IiI~TSn~---------g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~ 826 (1013)
.+..|+.++..+.++|+|||. +.+.+.....+. -...+|.-.. ..+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~---------~~~~gf~~~~-------~~~~----- 217 (363)
T 3hws_A 159 AAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVET---------GSGIGFGATV-------KAKS----- 217 (363)
T ss_dssp ---------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCC---------CC------------------------
T ss_pred EECCCCCCCCCCCCCEEEEECCCCEEEECCCCHHHHHHHHHHHHC---------CCCCCCCCCC-------CCCC-----
T ss_conf 522676665467776499987870078437707799999986312---------4567866554-------5443-----
Q ss_pred HHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEECCCCCH
Q ss_conf 32026643446888643201110159998999999985442100012111124689999990648731010233299994
Q 001788 827 EERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDF 906 (1013)
Q Consensus 827 ~~~~~~~~k~~~~~~~~DLn~~~~~~~~~~~~~~~~d~~~e~~~e~~~~~~~~~~~~~~~f~~ell~rid~iv~F~pl~~ 906 (1013)
..... -++. .......+.+. .|.|+|++|++.+++|.|++.
T Consensus 218 ---~~~~~--------~~l~---------------------~~v~~~~l~~~-------~~~~~l~~R~~~~~~~~pl~~ 258 (363)
T 3hws_A 218 ---DKASE--------GELL---------------------AQVEPEDLIKF-------GLIPEFIGRLPVVATLNELSE 258 (363)
T ss_dssp ---CCSCH--------HHHH---------------------HTCCHHHHHHH-------TCCHHHHTTCCEEEECCCCCH
T ss_pred ---CCHHH--------HHHH---------------------HHCCHHHHHHC-------CCCHHHHCCCCEEEECCCCCH
T ss_conf ---20106--------8898---------------------85799999871-------988788656671540489999
Q ss_pred HHHHHHHHH----HHHHHHHHHHCCCCCEECCHHHHHHHHHCC--C-CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 359999999----999999875069964032899899998199--8-99379999999997679999997
Q 001788 907 GRIRRDVTN----AITKKFSSIIGDALSIEILDEALEKLVGGV--W-LGRTGLEDWTEKVLVPSLHQLKL 969 (1013)
Q Consensus 907 ~~l~~ii~~----~l~~~~~~~~~~~~~L~id~~a~~~L~~~~--~-~gar~l~~~ie~~l~~~l~~~~~ 969 (1013)
+++.+|+.. .+.++...+...+..+.++++++++|+..+ | .|+|.|+++|++.+.+++.++..
T Consensus 259 ~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~ 328 (363)
T 3hws_A 259 EALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPS 328 (363)
T ss_dssp HHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999989989999999999846964887899999999961687668247999999998999974524
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=197.13 Aligned_cols=126 Identities=11% Similarity=0.146 Sum_probs=102.7
Q ss_pred CCCCC--HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC-C-CCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHH
Q ss_conf 45898--158999999999880577633348379981455-4-5430346888999999998430799956999360258
Q 001788 203 CGGQS--EPEMVVRESLAKIESKELDGVLKNVQIIRLDKD-F-TCDKAGIVSKLKDLGALIETKFGNGDGVILDLGDLKW 278 (1013)
Q Consensus 203 ~vG~~--gktaiv~~la~~i~~~~vp~~L~~~~i~~l~~~-~-ag~rge~e~rl~~l~~~v~~~~~~~~~vIl~idel~~ 278 (1013)
+.|+| |||.+++.+|.. -|++++.++.. + ..|.|+.|.+++++++.++. ..+.|||||||+.
T Consensus 243 L~GPPGTGKT~LAraiA~e----------lg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~----~~PsIIfIDEiDa 308 (806)
T 3cf2_A 243 LYGPPGTGKTLIARAVANE----------TGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPAIIFIDELDA 308 (806)
T ss_dssp EECCTTSCHHHHHHHHHTT----------TTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTT----SCSEEEEEESGGG
T ss_pred EECCCCCCHHHHHHHHHHH----------HCCEEEEEEHHHHHCCCCHHHHHHHHHHHHHHHH----CCCEEEEEEHHCC
T ss_conf 7798999889999999997----------1983999973795433316789999999999997----2992999851002
Q ss_pred HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCC-EEEECCC
Q ss_conf 772164467888987503345579999999998775323899855899825989998744139999888997-0453167
Q 001788 279 LVEQQVTSFGVPNSGTLQQQQQVLAEVVAEIGKLVARFGGGGGRLWLIGTATCETYLRCQVYHPSMENDWDL-QAVPIAA 357 (1013)
Q Consensus 279 lv~~~~~~~g~~~~~~~~~~~~~~~~~V~e~~~llkp~~~~~g~~~~IGatT~~~Y~k~~~~dpale~~~rf-q~v~V~e 357 (1013)
+......+.+ +....+|+.+..++.... .++.+.+||||+..+ .-||+|-..-|| ..|.|+-
T Consensus 309 l~~~r~~~~~-----------~~~~riv~~LL~~mdg~~-~~~~V~VIaaTN~~d-----~LD~ALrR~GRFd~~I~i~~ 371 (806)
T 3cf2_A 309 IAPKREKTHG-----------EVERRIVSQLLTLMDGLK-QRAHVIVMAATNRPN-----SIDPALRRFGRFDREVDIGI 371 (806)
T ss_dssp TCCTTTTCCC-----------TTHHHHHHHHHTHHHHCC-GGGCEEEEEECSSTT-----TSCTTTTSTTSSCEEEECCC
T ss_pred CCCCCCCCCC-----------HHHHHHHHHHHHHHHCCC-CCCCEEEEEECCCHH-----HCCHHHHCCCCCCEEEECCC
T ss_conf 3344577887-----------399999999999974666-669879999669803-----26988857863616886689
Q ss_pred CCC
Q ss_conf 999
Q 001788 358 KTP 360 (1013)
Q Consensus 358 ~p~ 360 (1013)
|+
T Consensus 372 -Pd 373 (806)
T 3cf2_A 372 -PD 373 (806)
T ss_dssp -CC
T ss_pred -CC
T ss_conf -79
No 8
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=1.00 E-value=1 Score=196.92 Aligned_cols=282 Identities=15% Similarity=0.183 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHH----HHHHHC--------CCCCCC-----CCCCCCEEEEECCCCCCCCHHH
Q ss_conf 89999999985034660899999999999----856316--------998899-----9999804997436887533599
Q 001788 620 DSFKRLLKSLMEKVWWQQEAASAVATTVT----QCKLGN--------GKRRGA-----GSKGDMWLLFMGPDRVGKKKMA 682 (1013)
Q Consensus 620 e~l~~l~~~L~~~ViGQ~~ai~~I~~ai~----~~r~g~--------~~~~p~-----~sk~~~~lLf~Gp~GvGKt~lA 682 (1013)
.+...+.+.|.+.|+||+++++.+..++. +.+.|. .+.+|+ ..++...++|+||+|||||.+|
T Consensus 10 ~~~~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 10 PAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHH
T ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHH
T ss_conf 99899999986581590999999999999999988754322100112334455655545568998899898998889999
Q ss_pred HHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH-------CCCCEEEEEECCCCCCHH-----------
Q ss_conf 99999942999963530998888998543446430336999987-------099789999278888999-----------
Q 001788 683 SALSELVSGASPIMIPLGPRRDHEEPEVRVRGKTALDKIGEAVK-------RNPFSVILLEDIDEADMV----------- 744 (1013)
Q Consensus 683 r~LA~~l~~~~~~~i~id~s~~~~~~~~g~~g~~~~~~L~eai~-------~~p~~VIllDEIeka~~~----------- 744 (1013)
++||+.+. .+++.+++..+.. .+|.|....+.+...+. ..+.+|||||||+++...
T Consensus 90 ~~la~~l~---~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~ 163 (376)
T 1um8_A 90 QTLAKHLD---IPIAISDATSLTE---AGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVS 163 (376)
T ss_dssp HHHHHHTT---CCEEEEEGGGCC-----------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------
T ss_pred HHHHHHHC---CCEEEECCHHHHH---CCCCCCCHHHHHHHHHHHCCCHHHHCCCEEEEECCHHHHHHHCCCCCEECCCC
T ss_conf 99999819---9889953135431---47678569999999876401116645980999857777743047872001454
Q ss_pred ---HHHHHHHHHHCCEE--ECCCCEEEE--------CCCEEEEEECCCCCCCHHHCCCCCCHHHHHHHHHCCCHHHHHHH
Q ss_conf ---99999999870607--648990753--------39639999328998210000246521356543101201356763
Q 001788 745 ---VRGNIKRAMERGRL--VDSYGREIS--------LGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLS 811 (1013)
Q Consensus 745 ---vq~~Ll~~le~G~~--~d~~G~~vd--------~~~~IiI~TSn~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~ 811 (1013)
+|+.|+++|+++.+ .+.+|+..+ .+|.++|+++|. +.+... +
T Consensus 164 ~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~--~~l~~~----------l------------- 218 (376)
T 1um8_A 164 GEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAF--DGLAEI----------I------------- 218 (376)
T ss_dssp CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECC--TTHHHH----------T-------------
T ss_pred HHHHHHHHHHHHHCCCEECCCCCCCCCCCCCEEEEECCCEEEEECCCH--HHHHHH----------H-------------
T ss_conf 378999999986155020156555445776417995587579946987--777899----------9-------------
Q ss_pred HCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 12443223345103532026643446888643201110159998999999985442100012111124689999990648
Q 001788 812 IRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDL 891 (1013)
Q Consensus 812 ~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~~DLn~~~~~~~~~~~~~~~~d~~~e~~~e~~~~~~~~~~~~~~~f~~el 891 (1013)
.++.. ...++|. ....+. .+. ...........+.. ..|.|+|
T Consensus 219 ------~~R~~---------------~~~~g~~--~~~~~~------~~~--~~~~~~~~~~~l~~-------~~~~p~l 260 (376)
T 1um8_A 219 ------KKRTT---------------QNVLGFT--QEKMSK------KEQ--EAILHLVQTHDLVT-------YGLIPEL 260 (376)
T ss_dssp ------TTSCS---------------SCCCSCC--CSSCCT------TTT--TTSGGGCCHHHHHH-------TTCCHHH
T ss_pred ------HHHHC---------------CCCCCCC--CHHHHC------CCH--HHHHHHCCHHHHHH-------CCCCHHH
T ss_conf ------98842---------------3555778--444320------006--68886418888855-------5897687
Q ss_pred HHHHCCCEECCCCCHHHHHHHHHH----HHHHHHHHHHCCCCCEECCHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHH
Q ss_conf 731010233299994359999999----9999998750699640328998999981998---993799999999976799
Q 001788 892 LNSVDSAIVFKPVDFGRIRRDVTN----AITKKFSSIIGDALSIEILDEALEKLVGGVW---LGRTGLEDWTEKVLVPSL 964 (1013)
Q Consensus 892 l~rid~iv~F~pl~~~~l~~ii~~----~l~~~~~~~~~~~~~L~id~~a~~~L~~~~~---~gar~l~~~ie~~l~~~l 964 (1013)
++|++.++.|.|++.+++..|+.. .+.++...+...+..+.++++++++|+..+| .|+|.|++++++.+..++
T Consensus 261 ~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~ 340 (376)
T 1um8_A 261 IGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDIM 340 (376)
T ss_dssp HTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHH
T ss_pred HCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 54787144446799999999985257779999999986659669988999999999743566682779999999999998
Q ss_pred HHHHHC
Q ss_conf 999971
Q 001788 965 HQLKLR 970 (1013)
Q Consensus 965 ~~~~~~ 970 (1013)
.+....
T Consensus 341 ~~~~~~ 346 (376)
T 1um8_A 341 FDLPKL 346 (376)
T ss_dssp HTGGGG
T ss_pred HHCCCC
T ss_conf 625578
No 9
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=1.00 E-value=1 Score=176.38 Aligned_cols=145 Identities=13% Similarity=0.276 Sum_probs=107.7
Q ss_pred HHHCC-CCEEEEEECCCCCCH------------HHHHHHHHHHHCCEEECCCCEEEECCCEEEEEECCCCCCCHHHCCCC
Q ss_conf 98709-978999927888899------------99999999987060764899075339639999328998210000246
Q 001788 724 AVKRN-PFSVILLEDIDEADM------------VVRGNIKRAMERGRLVDSYGREISLGNVIFILTADWLPDSLKFLSQG 790 (1013)
Q Consensus 724 ai~~~-p~~VIllDEIeka~~------------~vq~~Ll~~le~G~~~d~~G~~vd~~~~IiI~TSn~g~~~~~~~~~~ 790 (1013)
++.+. ++.|+++|||||+.. .+|+.||+++|........ ..++.++.+||+|.....
T Consensus 244 ai~~ae~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~-~~~d~~~ilfI~~gaf~~--------- 313 (444)
T 1g41_A 244 AIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKH-GMVKTDHILFIASGAFQV--------- 313 (444)
T ss_dssp HHHHHHHHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETT-EEEECTTCEEEEEECCSS---------
T ss_pred HHHHHCCCCEEEHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC-CEECCCCEEEEECCCCCC---------
T ss_conf 9997325785358899998503477788841789999999874155211352-001477479992263244---------
Q ss_pred CCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 52135654310120135676312443223345103532026643446888643201110159998999999985442100
Q 001788 791 ITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPRKETGSGLSFDLNKAADVGDDKDGSHNSSDLTVDHEE 870 (1013)
Q Consensus 791 ~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~k~~~~~~~~DLn~~~~~~~~~~~~~~~~d~~~e~~~ 870 (1013)
.+
T Consensus 314 -------------------------------------------~~----------------------------------- 315 (444)
T 1g41_A 314 -------------------------------------------AR----------------------------------- 315 (444)
T ss_dssp -------------------------------------------CC-----------------------------------
T ss_pred -------------------------------------------CC-----------------------------------
T ss_conf -------------------------------------------89-----------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHCCCEECCCCCHHHHHHHHH---HHHHHHHHHHH-CCCCCEECCHHHHHHHHHCCC
Q ss_conf 01211112468999999064873101023329999435999999---99999998750-699640328998999981998
Q 001788 871 EHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVT---NAITKKFSSII-GDALSIEILDEALEKLVGGVW 946 (1013)
Q Consensus 871 e~~~~~~~~~~~~~~~f~~ell~rid~iv~F~pl~~~~l~~ii~---~~l~~~~~~~~-~~~~~L~id~~a~~~L~~~~~ 946 (1013)
| ..+.|+|++|++.+|.|.+|+.+++.+|+. ..+.+.+..+. ..++.+.|+++|+++|+..++
T Consensus 316 -----------~--~dlipel~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~ 382 (444)
T 1g41_A 316 -----------P--SDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAF 382 (444)
T ss_dssp -----------G--GGSCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHH
T ss_pred -----------H--HHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHH
T ss_conf -----------3--440657754463254179999999999999788769999999851459458989999999999988
Q ss_pred --------CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --------99379999999997679999997
Q 001788 947 --------LGRTGLEDWTEKVLVPSLHQLKL 969 (1013)
Q Consensus 947 --------~gar~l~~~ie~~l~~~l~~~~~ 969 (1013)
.|+|.|++.|++++...+.++..
T Consensus 383 ~~~~~t~~~GaR~L~~~ie~~~~~~~~~~~~ 413 (444)
T 1g41_A 383 RVNEKTENIGARRLHTVMERLMDKISFSASD 413 (444)
T ss_dssp HHHHHSCCCGGGHHHHHHHHHHHHHHHHGGG
T ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 7414786478258999999999999853422
No 10
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=1.00 E-value=1 Score=169.70 Aligned_cols=233 Identities=16% Similarity=0.227 Sum_probs=171.8
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH--HCC-----CCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 9999999850346608999999999998563--169-----988999999804997436887533599999999429999
Q 001788 622 FKRLLKSLMEKVWWQQEAASAVATTVTQCKL--GNG-----KRRGAGSKGDMWLLFMGPDRVGKKKMASALSELVSGASP 694 (1013)
Q Consensus 622 l~~l~~~L~~~ViGQ~~ai~~I~~ai~~~r~--g~~-----~~~p~~sk~~~~lLf~Gp~GvGKt~lAr~LA~~l~~~~~ 694 (1013)
...+...|.+.|+||+++++.+..++..... +.. ...+ ..++|+||+|||||.+|+++++.+. .
T Consensus 6 ~~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~------~~vll~G~~GtGKT~la~~la~~l~---~ 76 (310)
T 1ofh_A 6 PREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTP------KNILMIGPTGVGKTEIARRLAKLAN---A 76 (310)
T ss_dssp HHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCC------CCEEEECCTTSSHHHHHHHHHHHHT---C
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC------CEEEEECCCCCCHHHHHHHHHHHHC---C
T ss_conf 999999876444782999999999999887665302100025788------6499889798999999999999818---9
Q ss_pred CEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHC--------CCCEEEEEECCCCCCHHH------------HHHHHHHHH
Q ss_conf 635309988889985434464303369999870--------997899992788889999------------999999987
Q 001788 695 IMIPLGPRRDHEEPEVRVRGKTALDKIGEAVKR--------NPFSVILLEDIDEADMVV------------RGNIKRAME 754 (1013)
Q Consensus 695 ~~i~id~s~~~~~~~~g~~g~~~~~~L~eai~~--------~p~~VIllDEIeka~~~v------------q~~Ll~~le 754 (1013)
+++.++++.+.. .+|+|.+....+.+.... .+..||||||||++++.. |+.|+++++
T Consensus 77 ~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le 153 (310)
T 1ofh_A 77 PFIKVEATKFTE---VGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVE 153 (310)
T ss_dssp CEEEEEGGGGSS---CCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHH
T ss_pred CEEEECCHHCCC---CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 879970012235---77567557789999998755777622589889997755417100125555037899999999854
Q ss_pred CCEEECCCCEEEECCCEEEEEECCCCCCCHHHCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf 06076489907533963999932899821000024652135654310120135676312443223345103532026643
Q 001788 755 RGRLVDSYGREISLGNVIFILTADWLPDSLKFLSQGITLDEKKLTSLASGEWQLRLSIRGKTTKRRASWLDEEERSTKPR 834 (1013)
Q Consensus 755 ~G~~~d~~G~~vd~~~~IiI~TSn~g~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~krk~~~~~~~~~~~~~~ 834 (1013)
++.+....+ ..+..+.+||+++|..... .
T Consensus 154 ~~~~~~~~~-~~~~~~~~~i~~~~~~~~~--------------------------------------------------~ 182 (310)
T 1ofh_A 154 GSTVSTKHG-MVKTDHILFIASGAFQVAR--------------------------------------------------P 182 (310)
T ss_dssp CCEEEETTE-EEECTTCEEEEEECCSSSC--------------------------------------------------G
T ss_pred CCEEECCCC-CCCCCCEEEEECCCCCCCC--------------------------------------------------C
T ss_conf 773731454-2357857999727766678--------------------------------------------------0
Q ss_pred CCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEECCCCCHHHHHHHHH
Q ss_conf 44688864320111015999899999998544210001211112468999999064873101023329999435999999
Q 001788 835 KETGSGLSFDLNKAADVGDDKDGSHNSSDLTVDHEEEHGFTNRLLMTPSTSTPSQDLLNSVDSAIVFKPVDFGRIRRDVT 914 (1013)
Q Consensus 835 k~~~~~~~~DLn~~~~~~~~~~~~~~~~d~~~e~~~e~~~~~~~~~~~~~~~f~~ell~rid~iv~F~pl~~~~l~~ii~ 914 (1013)
..+.++|++|++.++.|.|++.+++..|+.
T Consensus 183 --------------------------------------------------~~l~~~l~~R~~~~i~~~~~~~~~~~~il~ 212 (310)
T 1ofh_A 183 --------------------------------------------------SDLIPELQGRLPIRVELTALSAADFERILT 212 (310)
T ss_dssp --------------------------------------------------GGSCHHHHHTCCEEEECCCCCHHHHHHHHH
T ss_pred --------------------------------------------------CCCCHHHHHHCCCEEECCCCCHHHHHHHHH
T ss_conf --------------------------------------------------218998980178158768969899999998
Q ss_pred H----HHHHHHHHHHCCCCCEECCHHHHHHHHHCCC--------CCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9----9999998750699640328998999981998--------993799999999976799999
Q 001788 915 N----AITKKFSSIIGDALSIEILDEALEKLVGGVW--------LGRTGLEDWTEKVLVPSLHQL 967 (1013)
Q Consensus 915 ~----~l~~~~~~~~~~~~~L~id~~a~~~L~~~~~--------~gar~l~~~ie~~l~~~l~~~ 967 (1013)
. .+.++...+...+..+.++++++++|+..+| .+.|.+.+++++.+.....+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~ 277 (310)
T 1ofh_A 213 EPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSA 277 (310)
T ss_dssp SSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 66888899999998756971043999999999986540344211270779999999988651477
Done!