Query 001789
Match_columns 1013
No_of_seqs 223 out of 1045
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 09:21:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001789.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001789hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2022 Nuclear transport rece 100.0 9.1E-99 2E-103 834.4 81.0 917 1-1011 1-978 (982)
2 COG5101 CRM1 Importin beta-rel 100.0 3.9E-73 8.5E-78 604.2 69.5 910 6-1008 13-1029(1053)
3 KOG2081 Nuclear transport regu 100.0 4.6E-69 9.9E-74 577.8 50.7 549 26-622 2-557 (559)
4 KOG2021 Nuclear mRNA export fa 100.0 4.8E-55 1E-59 476.1 59.9 764 7-816 3-829 (980)
5 KOG2020 Nuclear transport rece 100.0 2.7E-41 6E-46 399.9 63.7 901 4-964 7-991 (1041)
6 KOG2023 Nuclear transport rece 100.0 6.1E-38 1.3E-42 338.7 41.3 729 8-938 14-794 (885)
7 KOG2171 Karyopherin (importin) 100.0 3.4E-29 7.3E-34 290.8 48.2 600 6-735 3-614 (1075)
8 KOG1241 Karyopherin (importin) 99.9 5.6E-21 1.2E-25 211.8 59.6 598 19-738 12-649 (859)
9 KOG1991 Nuclear transport rece 99.9 7E-17 1.5E-21 185.2 67.9 713 8-834 5-780 (1010)
10 PF08767 CRM1_C: CRM1 C termin 99.9 2.4E-19 5.3E-24 194.4 28.4 243 722-1009 66-316 (319)
11 COG5215 KAP95 Karyopherin (imp 99.8 9E-15 2E-19 157.3 59.8 619 19-758 16-672 (858)
12 KOG1992 Nuclear export recepto 99.7 6.9E-12 1.5E-16 141.4 57.5 704 5-833 3-773 (960)
13 KOG1410 Nuclear transport rece 99.7 3E-10 6.5E-15 125.0 67.7 801 3-855 1-940 (1082)
14 PF08389 Xpo1: Exportin 1-like 99.7 7.1E-16 1.5E-20 150.4 13.3 146 104-263 1-148 (148)
15 COG5656 SXM1 Importin, protein 99.6 3E-09 6.6E-14 119.0 64.5 623 19-736 14-690 (970)
16 KOG2274 Predicted importin 9 [ 99.5 2.4E-08 5.2E-13 114.7 55.1 144 8-161 5-160 (1005)
17 KOG1993 Nuclear transport rece 99.1 4.7E-05 1E-09 87.0 56.9 170 10-197 3-181 (978)
18 PF03810 IBN_N: Importin-beta 98.7 2.6E-08 5.7E-13 84.4 7.2 67 28-98 1-76 (77)
19 KOG2171 Karyopherin (importin) 98.5 0.00056 1.2E-08 82.3 37.0 371 415-832 95-483 (1075)
20 COG5657 CSE1 CAS/CSE protein i 97.8 0.15 3.3E-06 60.6 42.8 143 5-158 3-152 (947)
21 COG5215 KAP95 Karyopherin (imp 97.1 0.7 1.5E-05 52.1 31.6 88 480-574 323-416 (858)
22 KOG2023 Nuclear transport rece 97.1 0.95 2.1E-05 52.1 35.1 343 460-853 454-818 (885)
23 KOG0915 Uncharacterized conser 97.0 1.9 4.1E-05 54.6 33.9 174 374-571 987-1173(1702)
24 PF08506 Cse1: Cse1; InterPro 96.3 0.43 9.3E-06 53.3 20.9 200 328-551 141-370 (370)
25 KOG1242 Protein containing ada 95.9 4.7 0.0001 46.6 27.1 215 377-629 208-426 (569)
26 KOG0212 Uncharacterized conser 94.8 9.8 0.00021 43.5 25.7 136 698-851 262-405 (675)
27 KOG1241 Karyopherin (importin) 93.7 19 0.00042 42.8 50.3 248 453-723 567-819 (859)
28 PF03378 CAS_CSE1: CAS/CSE pro 92.5 11 0.00024 43.3 19.9 244 565-851 22-271 (435)
29 KOG0213 Splicing factor 3b, su 92.4 29 0.00062 41.2 23.2 179 414-618 939-1125(1172)
30 PF03378 CAS_CSE1: CAS/CSE pro 92.3 12 0.00026 42.9 20.0 158 677-853 65-230 (435)
31 PF02985 HEAT: HEAT repeat; I 91.9 0.22 4.8E-06 33.2 3.3 29 530-558 1-31 (31)
32 PF01602 Adaptin_N: Adaptin N 91.8 34 0.00074 40.8 37.2 426 18-559 52-486 (526)
33 COG5101 CRM1 Importin beta-rel 91.4 33 0.00072 39.9 22.9 228 680-914 189-452 (1053)
34 PF10508 Proteasom_PSMB: Prote 91.1 39 0.00084 40.0 25.7 136 453-603 51-192 (503)
35 KOG1824 TATA-binding protein-i 90.6 50 0.0011 40.5 44.4 538 208-851 582-1185(1233)
36 PF08767 CRM1_C: CRM1 C termin 89.5 16 0.00034 40.3 16.9 169 211-394 42-223 (319)
37 PRK09687 putative lyase; Provi 87.1 47 0.001 35.7 20.3 208 9-268 25-250 (280)
38 KOG1991 Nuclear transport rece 86.7 92 0.002 38.6 56.2 115 508-630 437-559 (1010)
39 KOG1824 TATA-binding protein-i 86.6 91 0.002 38.5 58.6 85 44-136 6-90 (1233)
40 PF12755 Vac14_Fab1_bd: Vacuol 86.3 2.3 5.1E-05 37.3 6.5 39 524-562 22-62 (97)
41 PF08167 RIX1: rRNA processing 85.5 38 0.00083 33.1 16.1 111 789-919 36-148 (165)
42 PF12348 CLASP_N: CLASP N term 83.6 17 0.00037 37.7 12.9 139 450-603 17-163 (228)
43 PF12460 MMS19_C: RNAPII trans 82.6 98 0.0021 35.6 31.8 59 792-853 337-395 (415)
44 PF12755 Vac14_Fab1_bd: Vacuol 82.2 7 0.00015 34.3 7.6 87 458-553 4-93 (97)
45 COG5181 HSH155 U2 snRNP splice 80.8 36 0.00078 39.5 14.1 166 415-606 745-918 (975)
46 KOG2274 Predicted importin 9 [ 80.3 1.6E+02 0.0034 36.4 22.0 227 675-917 522-760 (1005)
47 PF12348 CLASP_N: CLASP N term 79.6 56 0.0012 33.8 15.1 138 698-853 65-207 (228)
48 PF13513 HEAT_EZ: HEAT-like re 78.7 4.7 0.0001 31.0 4.9 50 504-554 3-55 (55)
49 KOG1242 Protein containing ada 77.0 1.6E+02 0.0035 34.6 19.5 256 423-731 198-461 (569)
50 cd00020 ARM Armadillo/beta-cat 75.5 3.6 7.8E-05 37.4 4.1 93 453-556 20-120 (120)
51 PF01602 Adaptin_N: Adaptin N 74.9 1.9E+02 0.004 34.4 28.3 109 481-603 113-224 (526)
52 PF13513 HEAT_EZ: HEAT-like re 74.3 3.4 7.3E-05 31.8 3.0 54 454-515 1-54 (55)
53 PF10508 Proteasom_PSMB: Prote 73.9 1.9E+02 0.0042 34.1 30.3 343 510-913 59-419 (503)
54 KOG0166 Karyopherin (importin) 73.8 1.8E+02 0.004 33.8 21.0 268 531-851 111-392 (514)
55 KOG4541 Nuclear transport rece 73.3 1.8E+02 0.004 33.6 28.3 46 788-833 567-612 (748)
56 PTZ00429 beta-adaptin; Provisi 72.9 2.5E+02 0.0053 34.9 24.8 96 452-562 232-332 (746)
57 PF08167 RIX1: rRNA processing 71.5 19 0.0004 35.3 8.2 80 45-133 30-110 (165)
58 KOG2081 Nuclear transport regu 71.0 2.1E+02 0.0046 33.3 17.3 94 789-895 258-351 (559)
59 KOG1059 Vesicle coat complex A 69.9 2.5E+02 0.0055 33.8 28.6 53 520-574 172-226 (877)
60 KOG2956 CLIP-associating prote 69.8 1.2E+02 0.0026 34.4 14.4 201 481-728 286-491 (516)
61 KOG2753 Uncharacterized conser 68.3 1.4E+02 0.003 32.3 13.7 76 525-603 103-179 (378)
62 KOG1992 Nuclear export recepto 68.3 1.2E+02 0.0026 36.8 14.7 193 704-916 566-772 (960)
63 KOG0168 Putative ubiquitin fus 65.6 1.5E+02 0.0032 36.3 14.7 153 527-718 212-367 (1051)
64 PF13646 HEAT_2: HEAT repeats; 63.0 41 0.00089 28.4 7.8 55 10-71 2-56 (88)
65 PF14500 MMS19_N: Dos2-interac 61.2 1.6E+02 0.0035 31.3 13.3 199 525-758 38-241 (262)
66 PTZ00429 beta-adaptin; Provisi 58.7 4.5E+02 0.0097 32.7 43.6 127 17-159 77-209 (746)
67 PF12717 Cnd1: non-SMC mitotic 57.1 1.5E+02 0.0032 29.4 11.7 55 791-853 1-55 (178)
68 PF13646 HEAT_2: HEAT repeats; 56.5 26 0.00056 29.7 5.4 57 8-70 31-87 (88)
69 KOG0212 Uncharacterized conser 56.2 3.9E+02 0.0085 31.3 25.4 344 534-947 5-370 (675)
70 PF11707 Npa1: Ribosome 60S bi 52.9 3.6E+02 0.0077 29.8 16.0 86 790-896 68-170 (330)
71 PF01603 B56: Protein phosphat 52.6 4.1E+02 0.0088 30.4 16.8 79 792-895 269-347 (409)
72 PF08064 UME: UME (NUC010) dom 51.1 1.4E+02 0.003 26.7 9.3 89 529-623 11-105 (107)
73 KOG1062 Vesicle coat complex A 50.0 5.7E+02 0.012 31.4 38.3 48 510-557 487-545 (866)
74 KOG4653 Uncharacterized conser 49.2 4.3E+02 0.0094 32.6 15.0 177 512-726 747-929 (982)
75 KOG1059 Vesicle coat complex A 48.8 5.7E+02 0.012 31.0 35.4 214 84-357 140-363 (877)
76 COG5240 SEC21 Vesicle coat com 43.3 6.1E+02 0.013 29.8 14.9 85 5-98 300-385 (898)
77 smart00802 UME Domain in UVSB 43.3 2.4E+02 0.0053 25.3 9.4 90 527-622 9-104 (107)
78 KOG1020 Sister chromatid cohes 42.2 3.1E+02 0.0067 36.1 13.0 94 208-315 828-923 (1692)
79 PF08389 Xpo1: Exportin 1-like 38.4 30 0.00064 32.8 3.2 44 508-551 105-148 (148)
80 KOG0166 Karyopherin (importin) 37.0 7.5E+02 0.016 29.0 15.9 215 456-715 127-351 (514)
81 KOG2021 Nuclear mRNA export fa 36.5 8.8E+02 0.019 29.7 29.4 50 508-557 212-261 (980)
82 PF14664 RICTOR_N: Rapamycin-i 34.6 3.1E+02 0.0068 30.8 10.9 124 114-271 6-140 (371)
83 PF12717 Cnd1: non-SMC mitotic 32.7 1.1E+02 0.0023 30.4 6.2 47 511-557 7-55 (178)
84 PF05918 API5: Apoptosis inhib 29.2 1E+03 0.023 28.3 20.9 188 511-733 78-274 (556)
85 KOG1943 Beta-tubulin folding c 27.1 3.7E+02 0.0079 34.1 10.1 83 513-601 527-612 (1133)
86 PRK10236 hypothetical protein; 27.0 1.2E+02 0.0026 31.2 5.3 61 7-78 20-86 (237)
87 PF10274 ParcG: Parkin co-regu 26.9 3.3E+02 0.0072 27.1 8.2 66 803-889 63-129 (183)
88 PF09184 PPP4R2: PPP4R2; Inte 25.8 4.5E+02 0.0097 28.4 9.7 109 6-121 2-113 (288)
89 PF10274 ParcG: Parkin co-regu 24.8 6.4E+02 0.014 25.1 9.7 54 676-732 73-129 (183)
90 cd07064 AlkD_like_1 A new stru 24.7 2.8E+02 0.0061 28.3 7.7 62 16-87 20-83 (208)
91 PF00514 Arm: Armadillo/beta-c 23.8 1.4E+02 0.0029 21.1 3.8 27 530-556 13-41 (41)
92 KOG1062 Vesicle coat complex A 22.8 1.5E+03 0.033 28.0 21.1 180 681-914 140-323 (866)
93 cd00020 ARM Armadillo/beta-cat 22.7 3.5E+02 0.0077 23.8 7.5 90 19-119 18-119 (120)
94 KOG2256 Predicted protein invo 21.7 1.5E+03 0.032 27.4 18.4 202 511-735 264-476 (661)
95 KOG0915 Uncharacterized conser 21.4 2.1E+03 0.045 29.2 36.0 145 685-839 1038-1188(1702)
96 KOG1967 DNA repair/transcripti 21.1 1.7E+03 0.038 28.0 15.2 220 13-262 781-1018(1030)
97 COG5181 HSH155 U2 snRNP splice 20.6 1.5E+03 0.032 27.1 20.5 74 524-603 599-678 (975)
98 KOG2011 Sister chromatid cohes 20.5 6.3E+02 0.014 32.4 10.6 59 789-853 298-356 (1048)
99 PF11864 DUF3384: Domain of un 20.4 1.4E+03 0.03 26.6 15.6 61 791-854 147-208 (464)
100 PF08623 TIP120: TATA-binding 20.3 3.1E+02 0.0067 26.9 6.5 57 790-853 39-95 (169)
No 1
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.1e-99 Score=834.43 Aligned_cols=917 Identities=18% Similarity=0.261 Sum_probs=724.4
Q ss_pred CCchHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchHHHHHHHHHHHHHhcCCCC
Q 001789 1 MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYY 80 (1013)
Q Consensus 1 ~~~~~~~~v~~av~~ly~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaa~tL~~kI~~~w~~ 80 (1013)
|+.+.+++|+++|+.||++++++.++.+++||++.|+||+||+++++||+.+++ .++|||||.||+.||+++|++
T Consensus 1 md~~~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~k~-----~evqyFGAltL~~ki~~~~e~ 75 (982)
T KOG2022|consen 1 MDSDLIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQPDKS-----SEVQYFGALTLHDKINTRWEE 75 (982)
T ss_pred CCchHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCch-----hHHHHHhHHHHHHHHHhhhcc
Confidence 777789999999999999989999999999999999999999999999998764 588999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHchhc--ccCchHHHHHHHhhcccC----CCcchHHHHHHHh
Q 001789 81 LQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQS----QDNGNMAVLEMLT 154 (1013)
Q Consensus 81 l~~e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~--~W~~~i~~li~~l~~~~~----~~~~~~~~L~iL~ 154 (1013)
+|++++..|+.+++..+.+++.||+.|.||+|.+|+.+.+++. .||+++.+++..++.... +...+..+|+.|+
T Consensus 76 ~~~~~~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls 155 (982)
T KOG2022|consen 76 CPANEAVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVPDLWPTAIQDVIPTLQGQASPLVLADINCEILLEVLS 155 (982)
T ss_pred CChhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccccCCchHHHHHHHHhcccCccccchhhHHHHHHHhc
Confidence 9999999999999999999999999999999999999999985 699999999999987431 1235789999999
Q ss_pred hchhccccccccccCCChHHHHHHHHHHHhhhhHHHHHHHHhhhhccCCCCCcchhhhHHHHHHHHHHHHhcccccccCc
Q 001789 155 VLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQ 234 (1013)
Q Consensus 155 ~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~L~cl~sWi~~~~~~~~~~ 234 (1013)
.+|+|..+.+ ++..+|..++.++......+..++..++....+.....-+-..+..+++|+.+|+++. ..+.
T Consensus 156 ~~p~e~q~~~-----l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i---~~~~ 227 (982)
T KOG2022|consen 156 FMPAEFQHVT-----LPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYI---SLTG 227 (982)
T ss_pred cCcHhhhhcc-----chhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHh---cccc
Confidence 9999987543 6778889999999999999999888877664322100001135688999999999965 2232
Q ss_pred chhcccchHHHHHHhccC--CCcHHHHHHHHH---------------HHhhcCC--ChhH---HHHhhhhh-hHHhhh-c
Q 001789 235 GSLAAHPLLNFVFNSLQV--QSSFDVAIEVLV---------------ELVGRHE--GLPQ---ALLCRVPF-LKELLL-L 290 (1013)
Q Consensus 235 ~~~~~~~ll~~l~~~L~~--~~~~~~a~~~l~---------------eil~~~~--~~~~---~l~~~~~~-l~~~~~-~ 290 (1013)
. ....++..++..+.. ....+++-+|++ ..+...+ .|.+ .|++...+ +++.-. .
T Consensus 228 ~--~c~~i~~~ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~ 305 (982)
T KOG2022|consen 228 M--DCDQITQVLLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKI 305 (982)
T ss_pred c--cHHHHHHHHHHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 2 233455555555541 112222222221 1111111 1222 23333333 222110 0
Q ss_pred ccccCCc--HHHHhHHHHHHHHHHHhhhHHHHhc------ChhHHHHHHHHHhcccCCCCCchh----hhhcHHHHHHHH
Q 001789 291 PALTDGD--EKVIGGLACLMSEIGQAAPSLIVEA------SPEALALADALLSCVAFPSEDWEI----ADSTLQFWSTLA 358 (1013)
Q Consensus 291 ~~~~~~d--~~~~~~l~~l~~~~~e~~~~~l~~~------~~~~~~ll~~ll~~~~~p~~d~~v----~~~~l~FW~~l~ 358 (1013)
....+.| +|....+++++++.+|++.+.+.++ ++-+.+++..|+.|+++||+ |+| +..+++||++|+
T Consensus 306 ~~~e~~d~~~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~-ypveE~~S~~~l~FW~tL~ 384 (982)
T KOG2022|consen 306 QEEENADASEEEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQ-YPVEEIVSDRTLIFWYTLQ 384 (982)
T ss_pred HHHhCCCchhHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCC-ccHHHHHhHHHHHHHHHHH
Confidence 1334555 7788899999999999999988654 23457899999999999994 554 458899999999
Q ss_pred HHHhccchhhhhhhhhhhhhhH-HHHHHHHHHHHHhcccCCC-CCCCCCCCCCcchHHHHHHHHHHHHHHHHHhhCchH-
Q 001789 359 SYILGLDASIAKNKKHVEDMFF-SVFSALLDALLLRAQVDES-SFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSAT- 435 (1013)
Q Consensus 359 ~~l~~~~~~~~~~~~~~~~~~~-~~~~~L~~~li~k~~~p~~-~~~~~~~~d~~d~f~~fR~~~~d~l~~~~~~l~~~~- 435 (1013)
|++..+..++. +.....|+ |+|.+|++++++|+.+|.+ .|. .|.+|++|.|+.||++++|+++++|+++|+..
T Consensus 385 dei~~~~~e~~---~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~-~W~S~s~e~F~~YR~diSD~~~~~Y~ilgd~ll 460 (982)
T KOG2022|consen 385 DEIMQTINETQ---QIKKQILSQQIYAQLVEILLKKLALPSKEIWL-SWSSDSREQFESYRKDISDLLMSSYSILGDGLL 460 (982)
T ss_pred HHHHHhhhccC---CcchhHHHHHHHHHHHHHHHHHhcCCCHHHhc-cCCcchHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 99976655432 22334554 9999999999999999987 455 59999999999999999999999999999642
Q ss_pred -HHHHHHhhhhcCCC-CCCCchhhhHHHHHHHhhhhcccccCCccchHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHH
Q 001789 436 -FIQKVFFGSWGSAN-VPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVI 513 (1013)
Q Consensus 436 -~l~~~~~~l~~~~~-~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~i 513 (1013)
++...++++..++. .+.+|+..|+|+|++.++++.+..+++ +.+..++...++.+..... +. ..+|++.+|
T Consensus 461 ~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~----~~i~rl~~~~asik~S~~n--~q-l~~Tss~~i 533 (982)
T KOG2022|consen 461 DFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETES----TWIPRLFETSASIKLSAPN--PQ-LLSTSSDLI 533 (982)
T ss_pred HHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchh----HHHHHHHHhccccccccCC--hh-HHHHHHHHH
Confidence 44445555444333 466799999999999999999986554 5566666655543311000 11 344668999
Q ss_pred HhhHHHHHhchhchHHHHHHHHHhcCcCchHHHHHHHHHHHHHHhhcccCCCccHHHHHH-HHHHHHhcCCChhhHHHHH
Q 001789 514 GSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMW-IGEALEKRHLPLEDEEEVV 592 (1013)
Q Consensus 514 g~y~~wl~~~p~~L~~vl~~l~~~l~~~~v~~~Aa~a~~~lc~~c~~~l~~~~~~~~l~~-~~~~l~~~~l~~~~~~~l~ 592 (1013)
|.|+.|+..||.||++.++.||.++|+++....|..++++||++|+.+|. | +.+.+.. +++.+......+.++.+++
T Consensus 534 gs~s~~l~e~P~~ln~sl~~L~~~Lh~sk~s~q~i~tl~tlC~~C~~~L~-p-y~d~~~a~~~e~l~~~~~~~S~~~klm 611 (982)
T KOG2022|consen 534 GSLSNWLGEHPMYLNPSLPLLFQGLHNSKESEQAISTLKTLCETCPESLD-P-YADQFSAVCYEVLNKSNAKDSDRLKLM 611 (982)
T ss_pred HHHHHHHhcCCcccCchHHHHHHHhcCchHHHHHHHHHHHHHHhhhhhCc-h-HHHHHHHHHHHHhcccccCchHHHHHH
Confidence 99999999999999999999999999998888888999999999999995 3 5555554 4555566778899999999
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHHHHHHHHHHhhhcccccccccCCCC--
Q 001789 593 GAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTN-- 670 (1013)
Q Consensus 593 eai~~ii~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~-- 670 (1013)
.+||++++.+.+++ +.+|+.++++|+.++++.++....+ +++.. +. ..-.+.+++++|.++..+.+.-
T Consensus 612 ~sIGyvls~~~pEe-~~kyl~~lin~il~qle~~l~~~i~-----~~e~~---l~-~~~~l~~iS~LftSL~~~~~~~d~ 681 (982)
T KOG2022|consen 612 KSIGYVLSRLKPEE-IPKYLMKLINPILSQLEINLAPGID-----DQENH---LR-IAFQLNTISALFTSLINKKDIIDT 681 (982)
T ss_pred HHHHHHHHhccHHh-HHHHHHHHHHHHHHHHHHhhcCCCC-----CHHHH---HH-HHHHHHHHHHHHhccCCCCccccc
Confidence 99999999998766 6899999999999999998776532 22221 22 2334677788888776433211
Q ss_pred -CC-------CCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhchhh-hhhHHHHHHHHHHhhhhcCC
Q 001789 671 -PA-------GDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHF-VTLLPQVLDCLSTNFVSFQN 741 (1013)
Q Consensus 671 -~~-------~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~k~~i~~~~~~~-~~~l~~l~~~l~~~f~~~~~ 741 (1013)
.+ +..|++.++++++|+++.++. +|.++.+++|++|.+++++++++++.+ .|++|.++.++.+ |... +
T Consensus 682 d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s-~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r-~~~~-~ 758 (982)
T KOG2022|consen 682 DQPEQREEPFQQFPILQVLQKAIPVFEKVLS-MWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVR-FLTS-C 758 (982)
T ss_pred cchhhhccccccCCHHHHHHHHHHHHHHHHH-HHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHH-hccc-h
Confidence 00 123788899999999999999 799999999999999999999998877 8999999999987 7644 5
Q ss_pred cchHHHHhHHHHHHhcCCCCcchhHHHHHHHHhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHHhhHHHHhcchhch
Q 001789 742 HECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALL 821 (1013)
Q Consensus 742 ~~~~L~l~s~li~~~g~~~~~~~~i~~l~~~l~~~t~l~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~l~~~~~~~l 821 (1013)
...-+.+..+++..+..++.+.+.+...+..+++.+ +..+.+. .+.++||+.+.+|++++.++++.|+.+.++...+-
T Consensus 759 ~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~s-l~lf~~~-~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~t 836 (982)
T KOG2022|consen 759 LAVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQS-LLLFEQH-PFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFT 836 (982)
T ss_pred HHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHH-HHHHhcc-CCCCCchHHHHHHHHHHHHHHhCcCccccchHHHH
Confidence 555677888888888777788888888777677776 6666664 47999999999999999999999999998643444
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHHHhhhhhhccCCCCCCCCcchHHHHHHHHHhhhHHHHHHHHHHhcCCCcccc
Q 001789 822 EVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSR 901 (1013)
Q Consensus 822 ~~il~~~l~~l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lv~~ll~~l~g~~~rs~ 901 (1013)
..++.+++..++.+|+.+++++++||+.|+....+ .+.+.+.+++.+.|+.|+.++|+|++|.++||.
T Consensus 837 s~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s------------~~~~tv~~~V~~~G~~Li~~im~~vgg~~~RS~ 904 (982)
T KOG2022|consen 837 SLILICAFILLNSPEPTTIRAASQFLTALATYATS------------HDLVTVTSVVAEIGPILIYAIMRGVGGEASRST 904 (982)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhccc------------chhHHHHHHHHhcchHHHHHHHHHhcCcCccch
Confidence 45666999999999999999999999998876532 235789999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHhchhcccchhcccCHHHHHHHHHHHhc--cCCcccCCchhhccccHHHHHHHhhhhhhhhhccccC
Q 001789 902 VHKCATILQQLAAICSISERTSGKAILSWESLQGWLHSAVQ--VLPAEYLKQGETETLPPVWLKALAGAASDYLESMSCN 979 (1013)
Q Consensus 902 ~~~~~~iL~~L~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~--~~p~~~~~~~~~~~F~~~l~~~l~~~~~~~~~~~~~~ 979 (1013)
++.++|||++|+++|+ ..++.|+.++|. +||+..+++++|++|++++++.
T Consensus 905 ld~~aDIL~al~~k~~-------------se~r~wl~~~lq~~gfPs~~~s~e~k~rf~t~llre--------------- 956 (982)
T KOG2022|consen 905 LDALADILLALNAKFF-------------SETRTWLKAVLQIPGFPSAGVSNEIKSRFVTSLLRE--------------- 956 (982)
T ss_pred hHHHHHHHHHHHHhhh-------------HHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHH---------------
Confidence 9999999999999885 789999999998 9998889999999999999776
Q ss_pred CCCCCCCccccccchHHHHHHHHHHHhhcCCC
Q 001789 980 GGNSNYGHMQGKGGRVLKRIIREFADSHRNVN 1011 (1013)
Q Consensus 980 ~~~~~~~~~~~~~~r~~~~~~rdF~~~~rg~~ 1011 (1013)
..++|.++..+.+||+.|||+.
T Consensus 957 ----------r~n~R~~k~~il~~~L~~~~l~ 978 (982)
T KOG2022|consen 957 ----------RGNKRNFKQQILEFNLACTGLP 978 (982)
T ss_pred ----------HhcHHHHHHHHHHHHHHhcCCC
Confidence 2456999999999999999985
No 2
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=100.00 E-value=3.9e-73 Score=604.24 Aligned_cols=910 Identities=12% Similarity=0.140 Sum_probs=674.5
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchHHHHHHHHHHHHHhcCCCCCChHH
Q 001789 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA 85 (1013)
Q Consensus 6 ~~~v~~av~~ly~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaa~tL~~kI~~~w~~l~~e~ 85 (1013)
++-+++.|.++|.+ +...+++|++.|.+||..|+||+-++++|+.+. .++.+|.|.+.|..-|.++|+-+|+++
T Consensus 13 iallDkVVttfyqg-~g~~q~qAq~iLtkFq~~PdaWtkad~IL~~S~-----~pqskyiALs~LdklIttkWkllp~~~ 86 (1053)
T COG5101 13 IALLDKVVTTFYQG-DGRKQEQAQRILTKFQELPDAWTKADYILNNSK-----LPQSKYIALSLLDKLITTKWKLLPEGM 86 (1053)
T ss_pred HHHHHHHHHHhcCC-CchhHHHHHHHHHHHHhCchHHHHHHHHHhccc-----CcchhhhHHHHHHHHHHhhhhhCCcHH
Confidence 45678899999954 567899999999999999999999999998754 469999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHHHchhc--ccCchHHHHHHHhhcccCCCcchHHHHHHHhhch
Q 001789 86 KDALLNALLVAAKRFSSG------PPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (1013)
Q Consensus 86 ~~~lr~~Ll~~l~~~~~~------~~~v~~kL~~~La~l~~~~~--~W~~~i~~li~~l~~~~~~~~~~~~~L~iL~~l~ 157 (1013)
+.+||+.+++.+.+-+++ .+.+++|+..+|+.++++.| .||+||++++...+. +-+.|++.+.+|+.|.
T Consensus 87 r~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~FIpeli~~S~~---s~~vCeNnmivLklLs 163 (1053)
T COG5101 87 RQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPTFIPELINVSQI---SMEVCENNMIVLKLLS 163 (1053)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccchhhHHHHhhccc---hHHHHhccHHHHHHhH
Confidence 999999999999876643 36899999999999999987 699999999998764 5678999999999999
Q ss_pred hccccccccccCCChHHHHHHHHHHHhhhhHHHHHHHHhhhhccCCCCCcchhhhHHHH---HHHHHHHHhcccccccCc
Q 001789 158 EEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKI---LRCLLSWVRAGCFTEISQ 234 (1013)
Q Consensus 158 EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~---L~cl~sWi~~~~~~~~~~ 234 (1013)
||++++.... +++.+...++..|...++.++.++.+++++..+ +++..++ |.|+..||++
T Consensus 164 EEvFdfSaeq--mTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~-------~SLi~ATLesllrfl~wiPl-------- 226 (1053)
T COG5101 164 EEVFDFSAEQ--MTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRD-------ESLIEATLESLLRFLEWIPL-------- 226 (1053)
T ss_pred HHHHhccHHH--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHHHHhhCch--------
Confidence 9999987544 777788888999999999999999999998754 3455554 4555566665
Q ss_pred chhcccchHHHHH-HhccCCCcHHHHHHHHHHHhhcCC-----Chh--------HHHH-hhh-------hhhHHhhhccc
Q 001789 235 GSLAAHPLLNFVF-NSLQVQSSFDVAIEVLVELVGRHE-----GLP--------QALL-CRV-------PFLKELLLLPA 292 (1013)
Q Consensus 235 ~~~~~~~ll~~l~-~~L~~~~~~~~a~~~l~eil~~~~-----~~~--------~~l~-~~~-------~~l~~~~~~~~ 292 (1013)
+.+..+++++++. ++++.|+.+.++++|++|+.+.++ +.. +.+. ..+ -.+.+.|. .
T Consensus 227 ~yIfeTnIieLv~~~f~s~pd~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~--~ 304 (1053)
T COG5101 227 DYIFETNIIELVLEHFNSMPDTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYG--G 304 (1053)
T ss_pred hHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHc--c
Confidence 4578899999998 455678999999999999998663 111 1111 111 11222221 2
Q ss_pred ccCCcHHHHhHHHHHHHHHHHhhhHHHHhcCh--hHHHHHHHHHhcccCCCCCchhhhhcHHHHHHHHHHHhcc----c-
Q 001789 293 LTDGDEKVIGGLACLMSEIGQAAPSLIVEASP--EALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGL----D- 365 (1013)
Q Consensus 293 ~~~~d~~~~~~l~~l~~~~~e~~~~~l~~~~~--~~~~ll~~ll~~~~~p~~d~~v~~~~l~FW~~l~~~l~~~----~- 365 (1013)
....|.++++++|.+++++.+.|..++..... ..+..+.+|++++.+. +.++++.++++|..|.-++++- +
T Consensus 305 ~~~neq~Fvq~LA~fL~s~~~~~~~lLE~~e~~e~llnah~YLiqiSrIn--ereiFkt~leyW~klVadLy~E~q~lp~ 382 (1053)
T COG5101 305 MDKNEQIFVQKLAQFLSSLYEVYISLLEAREMAENLLNAHGYLIQISRIN--EREIFKTALEYWNKLVADLYSEFQRLPA 382 (1053)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhhhcc--HHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 23345679999999999999999998865422 3355688899999985 7899999999999988777631 1
Q ss_pred ----h---------------hhhhhhhhhhhhhHHHHHHHHHHHHHhcccCCCCCCCCCCCCCcchHHHH---------H
Q 001789 366 ----A---------------SIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQF---------R 417 (1013)
Q Consensus 366 ----~---------------~~~~~~~~~~~~~~~~~~~L~~~li~k~~~p~~~~~~~~~~d~~d~f~~f---------R 417 (1013)
+ ...+..+-++..|+.++++|.-+++.+|..|++++--+. |+++-.++| -
T Consensus 383 tem~Pli~ls~~s~~istnpn~~~~~pLrkhiY~~ilsqLrlvlienMvrPEEVliVen--degEivRefvketDtI~lY 460 (1053)
T COG5101 383 TEMSPLIQLSVGSQAISTNPNQDSTKPLRKHIYIGILSQLRLVLIENMVRPEEVLIVEN--DEGEIVREFVKETDTIELY 460 (1053)
T ss_pred cccCcchhccccchhccCCcchhcccchHHHHHHHHHHHHHHHHHHcCCCcceEEEEEC--CCcHHHHHHhccccHhHHH
Confidence 1 011223346678999999999999999999999542111 344444444 3
Q ss_pred HHHHHHHHHHHHhhCch--HHHHHHHhhhhcCCCCCCCchhhhHHHHHHHhhhhcccccCCccchHHHHHHHHHhccCch
Q 001789 418 MNLVELLVDICQLLRSA--TFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRS 495 (1013)
Q Consensus 418 ~~~~d~l~~~~~~l~~~--~~l~~~~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~ 495 (1013)
+.+++++.+..++.-.+ .++...+... -.+..|+|+.++..|||+|+|+++++++.+.-.+..+++.|..|++...
T Consensus 461 ksmRevLvyLthL~v~Dte~~mi~Klarq--~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKr 538 (1053)
T COG5101 461 KSMREVLVYLTHLIVDDTEKYMIGKLARQ--LDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKR 538 (1053)
T ss_pred HHHhhHHHHHhhhhhhhHHHHHHHHHHHH--hcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 56788999988875433 2333222222 2346899999999999999999999975442224456666667775442
Q ss_pred hhhhhHHHHHHHHHHHHHHhhHHHHHhchhchHHHHHHHHHhcCc--CchHHHHHHHHHHHHHHhhcccCCCc---cHHH
Q 001789 496 EELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALIDEPS---NLEI 570 (1013)
Q Consensus 496 ~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~~L~~vl~~l~~~l~~--~~v~~~Aa~a~~~lc~~c~~~l~~~~---~~~~ 570 (1013)
.++.+||+++.+|+++|+|++|++.||.||.+|+..||++|++ .+++++||++|.+|.++|+.+++..+ ..|+
T Consensus 539 --gKdnKAVvASnIMyvvGQYpRFLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpF 616 (1053)
T COG5101 539 --GKDNKAVVASNIMYVVGQYPRFLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPF 616 (1053)
T ss_pred --cCCcchhhecceeeeeccchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcH
Confidence 1222478999999999999999999999999999999999995 66999999999999999999886322 3678
Q ss_pred HHHHHHHHH--hcCCChhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHHHH
Q 001789 571 LMWIGEALE--KRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSS 648 (1013)
Q Consensus 571 l~~~~~~l~--~~~l~~~~~~~l~eai~~ii~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 648 (1013)
+..++.++. .+++.+.+...+|||+|.+|+..|........+..+++-....|.++..++..+..+.....
T Consensus 617 I~~Iirnl~ktT~dL~pqQ~htfYeAcg~vIse~p~~~~~~rlv~dlm~Lpn~aw~niv~qa~~n~~~L~d~~------- 689 (1053)
T COG5101 617 IVYIIRNLPKTTGDLEPQQKHTFYEACGMVISEVPKTRDYKRLVLDLMDLPNSAWLNIVIQADENINRLSDTM------- 689 (1053)
T ss_pred HHHHHHhhhhhcccCChHHHhHHHHHHhHHHhccchhhHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhcchh-------
Confidence 889988884 58899999999999999999999998777888889999999999998877643211111111
Q ss_pred HHHHHHhhhcccccccccCCCCCC---CCchHHHHHHHHHH------HHHHHHHh------h---hccchHHHHHHHHHH
Q 001789 649 ATRGLYRMGTVFSHLPVPLPTNPA---GDDPIFALLRVFWP------MLEKLFRS------E---HMENGNLSTAACRAL 710 (1013)
Q Consensus 649 ~~~~l~~L~~i~~~l~~~~~~~~~---~~~p~~~~~~~i~~------~l~~i~~~------~---~~~~~~v~e~~c~~~ 710 (1013)
..+.+++..+.-. ..+.+.+ .++.+-.+..++.+ .+...... + +.+--.|-..+.+++
T Consensus 690 ---tvki~an~~ktnV-a~ctslg~~fyPq~~~~y~~ml~ly~avs~~Is~~vaaeg~iatktp~vrglrtiKkEIlkLv 765 (1053)
T COG5101 690 ---TVKIDANKMKTNV-AKCTSLGYRFYPQTCSSYCIMLFLYFAVSFDISNSVAAEGLIATKTPAVRGLRTIKKEILKLV 765 (1053)
T ss_pred ---HHHHHHHHHHHHH-HHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccchHHHHHHHHHHH
Confidence 0111111111100 0000000 11122222222222 11111110 0 000001111222222
Q ss_pred HHHHHH---hchhhhhhHHHHHHHHHHhhhhcCC---cchHHHHhHHHHHHhcCC-CCcchhHHHHHHHHhhHHHHHHhh
Q 001789 711 SLAIQS---SGQHFVTLLPQVLDCLSTNFVSFQN---HECYIRTASVVIEEFGHK-DEYGPLFVTTFERFSQAASVRALN 783 (1013)
Q Consensus 711 k~~i~~---~~~~~~~~l~~l~~~l~~~f~~~~~---~~~~L~l~s~li~~~g~~-~~~~~~i~~l~~~l~~~t~l~~l~ 783 (1013)
..-+.. +..--..+++++++.++.+|....| .+.+|.+.++++...++. ..-++.+ +.....+| +.++.
T Consensus 766 ~tyIska~dl~~V~n~lv~~l~eaVl~DY~nNvPdardaevLnl~ttiV~~v~~~i~~~~~l~---l~svf~ct-l~mi~ 841 (1053)
T COG5101 766 ATYISKARDLKFVQNDLVNMLCEAVLFDYKNNVPDARDAEVLNLGTTIVRNVESVIYLQRELF---LISVFICT-LIMIV 841 (1053)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHhhhhhHHH---HHHHHhhh-HHHHH
Confidence 222211 1111235788999999999987644 677999999999988753 1112222 22444566 66665
Q ss_pred cCCCCCCCCchHHHHHHHHHHHHHHhhHHHHhcchhchHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhhhhhccCCCC
Q 001789 784 SSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTT 863 (1013)
Q Consensus 784 ~~~~~~~~pD~~~~~f~l~~~~l~~~p~~l~~~~~~~l~~il~~~l~~l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~ 863 (1013)
. +++++||++.+||.|+..+..+++..|+.-|++.|..+.+.++|++++..|++...+++.+..++.++.+. +
T Consensus 842 k--df~EypEhr~~f~~Ll~~inl~sF~afl~~p~p~Fklv~nti~wsfkhi~RDv~~~gLnill~l~kn~~~m----g- 914 (1053)
T COG5101 842 K--DFDEYPEHRKNFLLLLENINLFSFSAFLSFPQPSFKLVYNTILWSFKHINRDVSDLGLNILLILFKNCHEM----G- 914 (1053)
T ss_pred h--hhhhChHHHHHHHHHHHHHHHHhHHHHHcCCcHHHHHHHHHHHHHHHhccchHhhhhhHHHHHHHHHHHHh----C-
Confidence 4 78999999999999999999999999998888899999999999999999999999999999999887541 1
Q ss_pred CCCCcchHHHHHHHHHhhhHHHHHHHHHHhcCCCcccchhhhhHHHHHHHHHhchhcccc----hhcccCHHHHHHHHHH
Q 001789 864 SIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVHKCATILQQLAAICSISERTS----GKAILSWESLQGWLHS 939 (1013)
Q Consensus 864 ~~~~~~~~~~~~~~~~~~g~~Lv~~ll~~l~g~~~rs~~~~~~~iL~~L~~~~~~~~~~~----~~~~~~~~~~~~wl~~ 939 (1013)
+ ..+.+|+.+++-..+.+++..+++..|+|+++.++-+|..|++...++ ++. -+.-+|...+.+++.+
T Consensus 915 -~------~~~n~F~~~yy~s~l~~il~vltDsDhKsgF~~Q~Llla~li~lv~dn-kisVPlyd~~~~n~~~lseyi~~ 986 (1053)
T COG5101 915 -V------PFINQFYAQYYMSTLENILGVLTDSDHKSGFDQQCLLLAFLIRLVKDN-KISVPLYDGINPNITILSEYIVG 986 (1053)
T ss_pred -C------chHHHHHHHHHHHHHHHHHeeeeccchhccchHHHHHHHHHHHHHhcc-ccccccccCCCCchhhHHHHHHH
Confidence 1 468999999999999999999999999999999999999999877654 112 1123566788999998
Q ss_pred Hhc-cCCcccCCchhhccccHHHHHHHhhhhhhhhhccccCCCCCCCCccccccchHHHHHHHHHHHhhc
Q 001789 940 AVQ-VLPAEYLKQGETETLPPVWLKALAGAASDYLESMSCNGGNSNYGHMQGKGGRVLKRIIREFADSHR 1008 (1013)
Q Consensus 940 ~l~-~~p~~~~~~~~~~~F~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~rdF~~~~r 1008 (1013)
.+. +||+ +++++...|...+++. .++..-||++++||..+..
T Consensus 987 l~~~sfp~--it~e~v~~f~~~l~~~-------------------------~~d~~ifk~~~~df~vkv~ 1029 (1053)
T COG5101 987 LFVKSFPN--ITQESVKIFSVGLFEL-------------------------CGDDEIFKEHVEDFRVKVY 1029 (1053)
T ss_pred HHHhhcCc--ccHHHHHHHHHHHHHH-------------------------hCcHHHHHHHHHHHhhhee
Confidence 877 9999 9999999999999887 3677889999999987654
No 3
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.6e-69 Score=577.77 Aligned_cols=549 Identities=25% Similarity=0.391 Sum_probs=480.4
Q ss_pred HHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCCH
Q 001789 26 VAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPP 105 (1013)
Q Consensus 26 ~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaa~tL~~kI~~~w~~l~~e~~~~lr~~Ll~~l~~~~~~~~ 105 (1013)
.+|+.||++||+|+++|++|.++|+.. .+.+..+|||||+++||+++|++||+....++|+++++|+......+.
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~~-----~~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l~~~~~ 76 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQK-----CDVEALLFAAQTLRNKIQYDFSELPPLTHASLRDSLITHLKELHDHPD 76 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHccc-----chHHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHHHhCCc
Confidence 479999999999999999999999874 358999999999999999999999999999999999999998887777
Q ss_pred HHHHHHHHHHHHHHchhcccCchHHHHHHHhhcccCCCcchHHHHHHHhhchhccccccccccCCChHHHHHHHHHHHhh
Q 001789 106 QLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSH 185 (1013)
Q Consensus 106 ~v~~kL~~~La~l~~~~~~W~~~i~~li~~l~~~~~~~~~~~~~L~iL~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~ 185 (1013)
.+++||+.++|++++|+++|.|+|.+++....+. +.....+|++|+++|||+.+.+. + ....||.++++++...
T Consensus 77 ~i~tQL~vavA~Lal~~~~W~n~I~e~v~~~~~~---~~~~~~lLeiL~VlPEE~~~~~~-~--~~a~Rr~e~~~~l~~~ 150 (559)
T KOG2081|consen 77 VIRTQLAVAVAALALHMPEWVNPIFELVRALSNK---HPAVPILLEILKVLPEETRDIRL-T--VGANRRHEFIDELAAQ 150 (559)
T ss_pred hHHHHHHHHHHHHHHHhHhhcchHHHHHHHhhcC---CccHHHHHHHHHhCcHhhcchhh-h--hhhhhHHHHHHHHHHh
Confidence 9999999999999999999999999999999874 33478999999999999987643 2 5778999999999999
Q ss_pred hhHHHHHHHHhhhhccCCCCCcchhhhHHHHHHHHHHHHhcccccccCcchhcc-cchHHHHHHhccCCCcHHHHHHHHH
Q 001789 186 TPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAA-HPLLNFVFNSLQVQSSFDVAIEVLV 264 (1013)
Q Consensus 186 ~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~L~cl~sWi~~~~~~~~~~~~~~~-~~ll~~l~~~L~~~~~~~~a~~~l~ 264 (1013)
.+.++.++..+++..+. +..+...++|+|+.||.+++ .+|.+.+.. .+++.++|..++++++.+.|++|++
T Consensus 151 ~~~~L~~l~~lLe~~~l-----~~~~~l~~Vl~~l~SWl~~~---~~~~d~v~a~~pLi~l~F~sl~~~~lhe~At~cic 222 (559)
T KOG2081|consen 151 VSKVLVFLSDLLERSDL-----KSSDDLEQVLRCLGSWLRLH---VFPPDQVLASFPLITLAFRSLSDDELHEEATECIC 222 (559)
T ss_pred HHHHHHHHHHHHhhcCC-----ChhhHHHHHHHHHhhhhhhc---cCCHHHHHhhhHHHHHHHHHcccchhhHHHHHHHH
Confidence 99999999999987643 22467899999999999987 778888754 4999999999999999999999999
Q ss_pred HHhhcCC------ChhHHHHhhhhhhHHhhhcccccCCcHHHHhHHHHHHHHHHHhhhHHHHhcChhHHHHHHHHHhccc
Q 001789 265 ELVGRHE------GLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVA 338 (1013)
Q Consensus 265 eil~~~~------~~~~~l~~~~~~l~~~~~~~~~~~~d~~~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~ 338 (1013)
.+++... .+...++..+.-+...+. .+...+|.|...++||+|+++||+|...+..++++++.+++.+|.+++
T Consensus 223 ~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~-~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~ 301 (559)
T KOG2081|consen 223 ALLYCSLDRSEGLPLAAILFIGVIILETAFH-LAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAG 301 (559)
T ss_pred HHHHHhhhhhccCchhHHHhccccccchHHH-HhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhcc
Confidence 9988542 244444433333333333 467789999999999999999999999999999999999999999999
Q ss_pred CCCCCchhhhhcHHHHHHHHHHHhccchhhhhhhhhhhhhhHHHHHHHHHHHHHhcccCCCCCCCCCCCCCcchHHHHHH
Q 001789 339 FPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRM 418 (1013)
Q Consensus 339 ~p~~d~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~li~k~~~p~~~~~~~~~~d~~d~f~~fR~ 418 (1013)
|+ |++|.+.+|.||+.+++.++..+++ .....|+|+|.++++.+.++++||++. ++..|+.++|.+||.
T Consensus 302 h~--~~evie~SF~fW~~lse~l~~~~~~------~~~~~frpy~~rLvs~l~~h~qlp~~~---~~l~Ee~~~f~~fR~ 370 (559)
T KOG2081|consen 302 HN--DTEVIEASFNFWYSLSEELTLTDDD------EALGIFRPYFLRLVSLLKRHVQLPPDQ---FDLPEEESEFFEFRL 370 (559)
T ss_pred CC--chhhhhhhHHhhhhhHHHHhccccH------HHHHHhHHHHHHHHHHHHHHccCCCcc---ccCccchhHHHHHHH
Confidence 98 7899999999999999998744433 456799999999999999999999854 344578899999999
Q ss_pred HHHHHHHHHHHhhCchHHHHHHHhhhhcCCCCCCCchhhhHHHHHHHhhhhcccccCCccchHHHHHHHHHhccCchhhh
Q 001789 419 NLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEEL 498 (1013)
Q Consensus 419 ~~~d~l~~~~~~l~~~~~l~~~~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~ 498 (1013)
.++|++.|+..++|.+.++.+++..+.+ ++.+|+..||+||.+++++..++.+++. .+|.+++.+.++|+..+
T Consensus 371 ~v~dvl~Dv~~iigs~e~lk~~~~~l~e---~~~~We~~EAaLF~l~~~~~~~~~~e~~-i~pevl~~i~nlp~Q~~--- 443 (559)
T KOG2081|consen 371 KVGDVLKDVAFIIGSDECLKQMYIRLKE---NNASWEEVEAALFILRAVAKNVSPEENT-IMPEVLKLICNLPEQAP--- 443 (559)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHcc---CCCchHHHHHHHHHHHHHhccCCccccc-hHHHHHHHHhCCccchh---
Confidence 9999999999999999999999988755 4678999999999999999999977663 47899999999987654
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHhchhchHHHHHHHHHhcCcCchHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHH
Q 001789 499 KGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEAL 578 (1013)
Q Consensus 499 ~~~~~v~~~t~~~~ig~y~~wl~~~p~~L~~vl~~l~~~l~~~~v~~~Aa~a~~~lc~~c~~~l~~~~~~~~l~~~~~~l 578 (1013)
+||+++ .++|+|++|+..||+++.+++++++.++...+++++|+.++..+|..|+..+. ...+.+..+...+
T Consensus 444 -----~~~ts~-ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~~as~~a~~~~~i~~~c~~~~~--~l~~~~~~l~~~l 515 (559)
T KOG2081|consen 444 -----LRYTSI-LLLGEYSEWVEQHPELLEPVLRYIRQGLQLKRLASAAALAFHRICSACRVQMT--CLIPSLLELIRSL 515 (559)
T ss_pred -----HHHHHH-HHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHH
Confidence 688775 89999999999999999999999999999888999999999999999999984 4899999988888
Q ss_pred HhcCCChhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Q 001789 579 EKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEA 622 (1013)
Q Consensus 579 ~~~~l~~~~~~~l~eai~~ii~~~p~~~~~~~~l~~ll~p~~~~ 622 (1013)
.....+.+... +++|++.+++.+|..+ .+..++.++.|.+..
T Consensus 516 ~~~~~~~e~a~-l~~~~s~i~~~lp~~k-~~~~~~el~~~~l~~ 557 (559)
T KOG2081|consen 516 DSTQINEEAAC-LLQGISLIISNLPAHK-AKIALEELCEPQLRN 557 (559)
T ss_pred HHHhccHHHHH-HHHHHHHHHhcCCHhh-hhHHHHHHhhHHHhc
Confidence 77666777777 9999999999999877 578899998886643
No 4
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.8e-55 Score=476.08 Aligned_cols=764 Identities=15% Similarity=0.147 Sum_probs=556.1
Q ss_pred HHHHHHHHHhccC-CChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchHHHHHHHHHHHHHhcCCCCCChHH
Q 001789 7 IKVAQAVHVLNHD-TESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA 85 (1013)
Q Consensus 7 ~~v~~av~~ly~~-~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaa~tL~~kI~~~w~~l~~e~ 85 (1013)
++++|||.+...+ .|+..|+||-+|+++++.||.||++|.+++.... .++.+|||+.|||..+++...++.+..+
T Consensus 3 ddiEqav~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~t----s~d~vkf~clqtL~e~vrekyne~nl~e 78 (980)
T KOG2021|consen 3 DDIEQAVNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLINET----SNDLVKFYCLQTLIELVREKYNEANLNE 78 (980)
T ss_pred hHHHHHHHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhc----ccchhhhhhHHHHHHHHHHhhccCCHHH
Confidence 4789999998875 6999999999999999999999999999998753 4689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh--c----CCCHHHHHHHHHHHHHHHchhc--ccCchHHHHHHHhhcccCCCcchHHHHHHHhhch
Q 001789 86 KDALLNALLVAAKRF--S----SGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (1013)
Q Consensus 86 ~~~lr~~Ll~~l~~~--~----~~~~~v~~kL~~~La~l~~~~~--~W~~~i~~li~~l~~~~~~~~~~~~~L~iL~~l~ 157 (1013)
.+.+|.+++.|+..- . .+|.+|+||++..|+.++..++ .|++++.|+...++-++ .....+..+++|-.+.
T Consensus 79 lqlvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s-~~~~~dfflkvllaId 157 (980)
T KOG2021|consen 79 LQLVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDS-AISGLDFFLKVLLAID 157 (980)
T ss_pred HHHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhccc-chhhHHHHHHHHHHhh
Confidence 999999999999742 2 2578999999999999999876 69999999999987632 2235889999999999
Q ss_pred hccccccccccCCChHHHHHHHHHHHh-hhhHHHHHHHHhhhhccCCCCCcchhhhHHHHHHHHHHHHhcccccccCcch
Q 001789 158 EEVIDSQASDCNISSAHRSQYGQELLS-HTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGS 236 (1013)
Q Consensus 158 EE~~~~~~~~~~l~~~~r~~~~~~l~~-~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~L~cl~sWi~~~~~~~~~~~~ 236 (1013)
.|+.|..-+++.-...+.+.+++.|++ +++.+.+.+-+++....+. .+..+...+|+|+.+|+. ||+.+.
T Consensus 158 sEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~----~npgl~~~cLdc~g~fVS-----WIdInL 228 (980)
T KOG2021|consen 158 SEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENI----VNPGLINSCLDCIGSFVS-----WIDINL 228 (980)
T ss_pred hHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhcc----CCchHHHHHHHHHHHHhh-----hhhhhh
Confidence 999987776643111233356677776 7899999999888764332 134588899999999999 889999
Q ss_pred hcccchHHHHHHhccCCCcHHHHHHHHHHHhhcCCC-hhHHHHhhhh--hhHHhhhcccccCCcHHHHhHHHHHHHHHHH
Q 001789 237 LAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEG-LPQALLCRVP--FLKELLLLPALTDGDEKVIGGLACLMSEIGQ 313 (1013)
Q Consensus 237 ~~~~~ll~~l~~~L~~~~~~~~a~~~l~eil~~~~~-~~~~l~~~~~--~l~~~~~~~~~~~~d~~~~~~l~~l~~~~~e 313 (1013)
+.+.+++++++++++.++++.+|++|+.+++++.++ ..+.-+-.++ .+.-.+..++.+.+|.|+...++++++.+|-
T Consensus 229 IaNd~f~nLLy~fl~ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gv 308 (980)
T KOG2021|consen 229 IANDYFLNLLYKFLNIEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGV 308 (980)
T ss_pred hhchhHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcce
Confidence 999999999999999999999999999999999985 2222111111 1111112135566889999999999999987
Q ss_pred hhhHHHHh----cC--------hhHHHHHHHHHhcccCCCCCchhhhhcHHHHHHHHHHHhccchhhhhhhhhhhhhhHH
Q 001789 314 AAPSLIVE----AS--------PEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFS 381 (1013)
Q Consensus 314 ~~~~~l~~----~~--------~~~~~ll~~ll~~~~~p~~d~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~ 381 (1013)
+......+ .+ ...+..+.++++...+. ++++..-+++||+.+...+-.+. ...+..+.
T Consensus 309 el~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e--~ddit~~ifpFlsdyl~~LKkl~--------~ls~~qk~ 378 (980)
T KOG2021|consen 309 ELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNE--FDDITAKIFPFLSDYLAFLKKLK--------ALSSPQKV 378 (980)
T ss_pred eeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhccc--chhhHHHHHHHHHHHHHHHhhcc--------cccchhhc
Confidence 76544432 11 13457899999999984 57899999999998776653321 12344455
Q ss_pred HHHHHHHHHHHhcccCCCC-CCCC-CCCCCcchHHHHHHHHHHHHHHHHHhhCchHHHHH---HHhhhhcCCCCCCCchh
Q 001789 382 VFSALLDALLLRAQVDESS-FNDD-GMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQK---VFFGSWGSANVPIPWKE 456 (1013)
Q Consensus 382 ~~~~L~~~li~k~~~p~~~-~~~~-~~~d~~d~f~~fR~~~~d~l~~~~~~l~~~~~l~~---~~~~l~~~~~~~~~W~~ 456 (1013)
.+.+++.++++|+.|++.- +.++ .+.|+++.|.+||+++. .+++....+.++.++.. .++....+ ....+|+.
T Consensus 379 ~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk-~fqdti~~idpsl~l~~Ir~slS~al~n-s~e~swqe 456 (980)
T KOG2021|consen 379 PLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLK-NFQDTIVVIDPSLFLNNIRQSLSAALMN-SKEESWQE 456 (980)
T ss_pred cHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHHHHhc-CCcchHHH
Confidence 6788889999999998763 2222 23366788999999996 55666566677654433 33332222 13567999
Q ss_pred hhHHHHHHHhhhhcccccCCcc---chH------HHHHHHH--HhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhchh
Q 001789 457 VETKLFALNVVSEVVLQEGQAF---DFS------VIMQLVA--VLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQT 525 (1013)
Q Consensus 457 ~Ea~L~~l~~iae~~~~~~~~~---~l~------~i~~~l~--~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~ 525 (1013)
+|+++|.++.++|+++.+.-.. +++ .++.++. .++.|+|+.. .+.+ |++|.||..||..+++
T Consensus 457 vE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lV----qLlf---mE~ivRY~kff~~esq 529 (980)
T KOG2021|consen 457 VELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELV----QLLF---MELIVRYNKFFSTESQ 529 (980)
T ss_pred HHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHH----HHHH---HHHHHHHHHHHhcchh
Confidence 9999999999999998521100 111 2222222 4567776432 2344 8999999999999999
Q ss_pred chHHHHHHHH--HhcCcCc--hHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHh----------cCCChhhHHHH
Q 001789 526 NARPLLLFLA--AGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEK----------RHLPLEDEEEV 591 (1013)
Q Consensus 526 ~L~~vl~~l~--~~l~~~~--v~~~Aa~a~~~lc~~c~~~l~~~~~~~~l~~~~~~l~~----------~~l~~~~~~~l 591 (1013)
++|.++++++ .|+++.. |+.+|++-|.++.+.-++.+. |...+++..+..-+.. ...+.+++..+
T Consensus 530 ~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlv-pfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyI 608 (980)
T KOG2021|consen 530 KIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLV-PFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYI 608 (980)
T ss_pred hhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCcCCCcCcccccccccccccee
Confidence 9999999998 6888754 999999999999999999886 4334455566555511 22356789999
Q ss_pred HHHHHHHHcc--CCcHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHHHHHHHHHHhhhcccccccccCCC
Q 001789 592 VGAISLILGS--VSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPT 669 (1013)
Q Consensus 592 ~eai~~ii~~--~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~ 669 (1013)
+|++|.+|.. .|.+. +..+...+++|.+.+..-....+.-.+....|+. +..+...+..+++.-|+..... .
T Consensus 609 fEtiGviI~l~n~paE~-qaay~~~litpl~~~~~igl~~a~lasde~~pv~----Ia~c~~~lmaig~lakgf~~rl-v 682 (980)
T KOG2021|consen 609 FETIGVIITLNNSPAEL-QAAYANTLITPLILDQIIGLLFAQLASDEASPVV----IAECHHILMAIGTLAKGFHIRL-V 682 (980)
T ss_pred eecceEEEeCCCCCHHH-HHHHHhcccChHHHHHHHHHHHHHHhccccccHH----HHHHHHHHHHHHHHhhcccccC-c
Confidence 9999999855 67665 6889999999988765433222210011122332 2233444455566666655432 1
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHhhhhcCCcchHHHHh
Q 001789 670 NPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTA 749 (1013)
Q Consensus 670 ~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~k~~i~~~~~~~~~~l~~l~~~l~~~f~~~~~~~~~L~l~ 749 (1013)
+.. +-.+..++.++..++..++. .++....+..++...+.|++.++|..+.|++|.+++.++.+-... ....||.++
T Consensus 683 t~~-qvg~~~vf~~~ldvil~~ls-~f~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~d~k-Emvdfl~fl 759 (980)
T KOG2021|consen 683 TEN-QVGNMVVFSNILDVILVTLS-FFNKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSSTDLK-EMVDFLGFL 759 (980)
T ss_pred chh-cccHHHHHHHHHHHHHHHHh-hccccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcCCHH-HHHHHHHHH
Confidence 111 12255667888888887777 488888999999999999999999999999999999999865433 466799999
Q ss_pred HHHHHHhcCCCCcchhHHHHHHHHhhHHHHHHhhcCCCCC------CCCchHHHHHHHHHHHHHHhhHHHHhc
Q 001789 750 SVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICD------QEPDLVEAYTNFASTFVRTSRKEVLAA 816 (1013)
Q Consensus 750 s~li~~~g~~~~~~~~i~~l~~~l~~~t~l~~l~~~~~~~------~~pD~~~~~f~l~~~~l~~~p~~l~~~ 816 (1013)
+++|+.|+. ++.+.+.+++..+.... +..+.....+. +.-+++.+|++|+..++.+-...++.+
T Consensus 760 sQLihkfk~--~~~~ilnqmlppll~rI-fsvi~r~a~p~dt~aa~ek~~lrksy~~fLqtftn~g~~silat 829 (980)
T KOG2021|consen 760 SQLIHKFKT--DCYQILNQMLPPLLNRI-FSVIERIAKPIDTAAAAEKILLRKSYCTFLQTFTNNGVTSILAT 829 (980)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHhcccCCCCChhHHHHHHHHHHHHHHHHHHHhcCCcceeeec
Confidence 999999995 45566666666555554 44444221111 123567789999999997765554443
No 5
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-41 Score=399.91 Aligned_cols=901 Identities=14% Similarity=0.126 Sum_probs=596.2
Q ss_pred hHHHHHHHHHHHhccC-CChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchHHHHHHHHHHHHHhcCCCCCC
Q 001789 4 DLQIKVAQAVHVLNHD-TESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQ 82 (1013)
Q Consensus 4 ~~~~~v~~av~~ly~~-~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaa~tL~~kI~~~w~~l~ 82 (1013)
+...++..|+.+-+.+ ++.+.|.+|++.|.+||..+++|..|..+|+.. ++.+++|||.|.|.+.|+++|+.+|
T Consensus 7 ~l~~~lldavv~~~~~~~s~~~r~eA~~~l~~lke~~~~~~~~~~iL~~s-----~~~~~k~f~Lqlle~vik~~W~~~~ 81 (1041)
T KOG2020|consen 7 KLDSELLDAVVVTLNPEGSNEERGEAQQILEELKEEPDSWLQVYLILKLS-----TNPILKYFALQLLENVIKFRWNSLP 81 (1041)
T ss_pred hHHHHHHHhHHHHhCcccchHHHHHHHHHHHHHHhCcchHHHHHHHHhcc-----CCchhheeeHHHHHHHHHHhcccCC
Confidence 4556677777775555 788899999999999999999999999999874 3579999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHHHchhc--ccCchHHHHHHHhhcccCCCcchHHHHHHHh
Q 001789 83 SAAKDALLNALLVAAKRFSSG------PPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLT 154 (1013)
Q Consensus 83 ~e~~~~lr~~Ll~~l~~~~~~------~~~v~~kL~~~La~l~~~~~--~W~~~i~~li~~l~~~~~~~~~~~~~L~iL~ 154 (1013)
.+++.++|+.+++.+...+.. .+.+++||+..++.++++.| .||++++++.+..+. ++..+++.+.+++
T Consensus 82 ~~~r~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp~~i~dl~~~s~~---s~~~~el~m~Il~ 158 (1041)
T KOG2020|consen 82 VEERVGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWPTFIPDLAQSSKT---SETVCELSMIILL 158 (1041)
T ss_pred ccccHHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcchhhhhHHHHhhc---CcccchHHHHHHH
Confidence 999999999999998765432 36899999999999999987 699999999999986 5668899999999
Q ss_pred hchhccccccccccCCChHHHHHHHHHHHhhhhHHHHHHHHhhhhccCCCCCcchhhhHHHHHHHHHHHHhcccccccCc
Q 001789 155 VLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQ 234 (1013)
Q Consensus 155 ~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~L~cl~sWi~~~~~~~~~~ 234 (1013)
.|.||++++.... +++.++.-+...+...+..+..++..+..+..+ .-.......|.++.+||+++
T Consensus 159 lLsEdvf~~ss~~--~~q~~~~il~~~~~~~f~~i~~l~~~~~~~a~~-----~~~~atl~tl~~fl~wip~~------- 224 (1041)
T KOG2020|consen 159 LLSEEVFDFSSSE--LTQQKIIILKNLLENEFQQIFTLCSYIKEKANS-----ELLSATLETLLRFLEWIPLG------- 224 (1041)
T ss_pred HHHHHHhcccchH--HHhhhHHHHHHHhhHHHHHHHHHHHHHHhhhhh-----HHHHHHHHHHHHHhhcccHH-------
Confidence 9999999876543 343333334444444677888888776554321 11123344555666666654
Q ss_pred chhcccchHHHHH-HhccCCCcHHHHHHHHHHHhhcCCC-h-------hHH------HHhhhhhhHHhhhcccccCCcH-
Q 001789 235 GSLAAHPLLNFVF-NSLQVQSSFDVAIEVLVELVGRHEG-L-------PQA------LLCRVPFLKELLLLPALTDGDE- 298 (1013)
Q Consensus 235 ~~~~~~~ll~~l~-~~L~~~~~~~~a~~~l~eil~~~~~-~-------~~~------l~~~~~~l~~~~~~~~~~~~d~- 298 (1013)
.+..++.+..++ ..++.++.+..|++|++++++.... + .+. .++..++..+.+. .....|.
T Consensus 225 -~I~~tn~l~~~l~~~ln~~~~r~~al~CL~ei~s~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~~~~~--~~~~~dq~ 301 (1041)
T KOG2020|consen 225 -YIFETNILELLLNKFLNAPELRNNALSCLTELLSRKRSIYERKTVPMFNLTIYQLRSIPQDLDIPEVYS--SLSDEDQD 301 (1041)
T ss_pred -HHHHhhhHHHHHHhccchHHHHHHHHHHHHHHHhccccchhHHhHHHHHHHHHHHHHhhhhhchhhhhh--cccHhHHH
Confidence 455555566555 5666789999999999999998642 1 110 1222233333332 2233445
Q ss_pred HHHhHHHHHHHHHHHhhhHHHHhc----ChhHHHHHHHHHhcccCCCCCchhhhhcHHHHHHHHHHHhccc-hh---h--
Q 001789 299 KVIGGLACLMSEIGQAAPSLIVEA----SPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLD-AS---I-- 368 (1013)
Q Consensus 299 ~~~~~l~~l~~~~~e~~~~~l~~~----~~~~~~ll~~ll~~~~~p~~d~~v~~~~l~FW~~l~~~l~~~~-~~---~-- 368 (1013)
.+.++++.+++.+++.|..++... +.....+..++ ..+..+ +-++...|+++|..+..+++..+ +. .
T Consensus 302 ~fi~~l~~~l~~f~~~~~~lle~~~~~~~~~~~~~~~li-~i~~~~--~se~~~~~ld~W~~lv~~l~~~~~~ll~~s~~ 378 (1041)
T KOG2020|consen 302 SFIEKLAQFLSLFFEQHIALLESSLSQRPVLLEALLELI-LISTIE--PSEIFKICLDYWNKLVADLYYNKPPLLQLSTT 378 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchhhhhHHHHHHHHHH-HHhccC--chhHHHHHHHHHHHHHHhhhcccccccccccc
Confidence 688999999999999999999773 11223444444 444443 45788889999999887765420 00 0
Q ss_pred ------hhhhhhhhhhhHHHHHHHHHHHHHhcccCCCCCCCCCCCCCcchHHHHH---------HHHHHHHHHHHHhhCc
Q 001789 369 ------AKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFR---------MNLVELLVDICQLLRS 433 (1013)
Q Consensus 369 ------~~~~~~~~~~~~~~~~~L~~~li~k~~~p~~~~~~~~~~d~~d~f~~fR---------~~~~d~l~~~~~~l~~ 433 (1013)
..+-+-++..|..++.++....+.+|.-|++.+--+. +..+.+++++ ..+.+.+.+.+.+-+.
T Consensus 379 ~~~~~~~~ri~~rk~~y~~~~~~~r~l~l~~m~~Pe~vlive~--~~~~~vre~~~~~~~~~ly~~~~e~l~~~~~L~~~ 456 (1041)
T KOG2020|consen 379 LPSISDYSRIDFRKSIYQEFLSKLRLLRLERMAKPEEVLIVEN--EQGEIVREFMKDHDFITLYPVLRETLVYLLHLDVV 456 (1041)
T ss_pred cccccchhccchHHHHHHHHHHHHHHHHHHHhcCchheeEEec--hHHHHHHHhccCcchhhhhHHHHHHHHHHHHhhhh
Confidence 0111224678889999999999999999988532111 2234444443 4455666665554332
Q ss_pred h--HHHHHHHhhhhcCCCCCCCchhhhHHHHHHHhhhhcccccCCccchHHHHHHHHHhccCchhhhhhHHHHHHHHHHH
Q 001789 434 A--TFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLAD 511 (1013)
Q Consensus 434 ~--~~l~~~~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~ 511 (1013)
. .++..-+...+ .+..++|..+...||+++++++.+.++.....+..++.-+.++.+.+..+ +..|++...+|+
T Consensus 457 ~t~~~~~~kl~~~l--~~~~~~~~~ln~l~~ai~sisg~~~e~~e~k~~~~v~~d~l~l~E~~~~k--dn~avi~~Ni~~ 532 (1041)
T KOG2020|consen 457 DTEKIMTEKLAIQL--DGDEWSLHNLNRLCWAIGSISGRMLEDMEKKFFVAVIRDLLNLCERKRGK--DNKAVIASNIMY 532 (1041)
T ss_pred hhhhhhhHhHHHHh--hHHHHhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcC--CchhHHHHHHHH
Confidence 1 12211122111 22467899999999999999987764321111222222223444333211 113678888999
Q ss_pred HHHhhHHHHHhchhchHHHHHHHHHhcCc--CchHHHHHHHHHHHHHHhhcccCCCc---cHHHHHHHHHHHH--hcCCC
Q 001789 512 VIGSYSKWISAFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALIDEPS---NLEILMWIGEALE--KRHLP 584 (1013)
Q Consensus 512 ~ig~y~~wl~~~p~~L~~vl~~l~~~l~~--~~v~~~Aa~a~~~lc~~c~~~l~~~~---~~~~l~~~~~~l~--~~~l~ 584 (1013)
++|+|++|++.|+.+|+++...+++.++. .+++++||++|.+|...|+.+++..+ ..|....+...+. ...+.
T Consensus 533 vv~q~p~Fl~~h~~~Lkt~~~~L~efmhe~h~gvqdmacd~F~~ii~~~~~~fv~~~~~e~~~fv~~~~~~l~~i~~~l~ 612 (1041)
T KOG2020|consen 533 VVGQYPRFLKAHWKFLKTVVHKLFEFMHETHEGVQDMACDTFIKIIQKCKRHFVITQLGETKPFVGELLLNLTAITEDLQ 612 (1041)
T ss_pred HhcccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhHHHHHHHHHhhhhhheeecccccccchHHHhhcccchhcCch
Confidence 99999999999999999999999999995 56899999999999999999642111 2334444444442 36778
Q ss_pred hhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhhhcccCCCC-CCCCchhhHHHHHHHHHHHHhhhcccccc
Q 001789 585 LEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHS-LIHNPATYTQILSSATRGLYRMGTVFSHL 663 (1013)
Q Consensus 585 ~~~~~~l~eai~~ii~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~l~~L~~i~~~l 663 (1013)
+.++...++++|.++.+-..+....++...++.-....|.+++.++.... .-..+.. +.+....+...+...+.+
T Consensus 613 ~~q~~~~~~al~~~V~~~~~~~~~~~~~~~~~vl~~~~~~nii~~~~~~~~~l~~~~~----v~s~~~i~~~~~~~~~sl 688 (1041)
T KOG2020|consen 613 PQQRHTFYEALGLMVSAEIDPAKAERLQSKLMVLPNRAWINIILQARCNDEILKLLET----VKSLLNILKTNSRALTSL 688 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhCCHhhHHHHHhcccccchhhhcchhhcCcccHHhhcchHH----HHHHHHHHHhHHHHHHhc
Confidence 88999999999987777555554677777877777777888776654211 1111111 112222233333344444
Q ss_pred cccCCCCCCC-CchHHHHHHHHHHHHHHHHHh--hhccchHHHHHHHHHHHHHHHH----hch-------hhhhhHHHHH
Q 001789 664 PVPLPTNPAG-DDPIFALLRVFWPMLEKLFRS--EHMENGNLSTAACRALSLAIQS----SGQ-------HFVTLLPQVL 729 (1013)
Q Consensus 664 ~~~~~~~~~~-~~p~~~~~~~i~~~l~~i~~~--~~~~~~~v~e~~c~~~k~~i~~----~~~-------~~~~~l~~l~ 729 (1013)
+.++....+- ......++...-+.+...... ....-.+.+.. .+-+++-+.. +.. .-..++|+.+
T Consensus 689 ~~~f~~~~~~~~~d~~~l~~~~s~~v~~~~~~~~~~~t~~~~v~~-~~svk~ei~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (1041)
T KOG2020|consen 689 GSTFVPQLGKIYLDMLQLYIKQSELVSINVTAGGSEKTKTPFVKT-LRSVKREILKLLETFISKSEQRDLYLLMLVPPLL 767 (1041)
T ss_pred CcccccccccccHHHHHHHHHhcccccHHHhcccccccccHHHHH-HHHHHHHHHHHHHhccCcccchhHHHHhhhhHHH
Confidence 4332111000 011122222222222221110 01111112211 2222222111 111 1234577777
Q ss_pred HHHHHhhhhcCC---cchHHHHhHHHHHHhcCC-CCcchhHHHHHHHHhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHH
Q 001789 730 DCLSTNFVSFQN---HECYIRTASVVIEEFGHK-DEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTF 805 (1013)
Q Consensus 730 ~~l~~~f~~~~~---~~~~L~l~s~li~~~g~~-~~~~~~i~~l~~~l~~~t~l~~l~~~~~~~~~pD~~~~~f~l~~~~ 805 (1013)
...+-.|....| .+..+.+...++..+|+- ..-.+ ..+..+.+++ +.++.. +++++||+...|+.++..+
T Consensus 768 ~~~~fd~~~nvPd~r~~~vl~l~~~iv~~Lg~~i~~~~~---~i~~~v~~c~-l~m~~~--d~qe~~e~~~~f~~lle~l 841 (1041)
T KOG2020|consen 768 DAVLFDYLDNVPDYRENEVLSLNATIVPKLGEFIPAELP---LINIAVLECT-LEMINK--DFQEYPEHRLNFLLLLEAL 841 (1041)
T ss_pred HHHHHHHHccCcchhcchHHHhhhhhhhhhhhHhhhhcc---HHHHHHHhhh-hhcccc--ccccchHHHHHHHHHHHHH
Confidence 777767765433 455677777777777753 22222 2233455665 565554 7889999999999999999
Q ss_pred HHHhhHHHHhcchhchHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhhhhhccCCCCCCCCcchHHHHHHHHHhhhHHH
Q 001789 806 VRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGL 885 (1013)
Q Consensus 806 l~~~p~~l~~~~~~~l~~il~~~l~~l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~L 885 (1013)
...|+..+...+++.+..+.+.+.|+..+..|.+.++++.-+..++...... . ...+.++..++..+
T Consensus 842 ~~~~~~~~~~l~~~~~~~~~~si~~~f~h~~r~i~~~~l~~l~~l~k~~~~~------------~-~~~~~~~~~~~~~~ 908 (1041)
T KOG2020|consen 842 LLFCFPAFSELPADQVKLVSDSIVWAFHHTMRNIAENGLNILLELLKNLAEM------------E-KFANAFYQTYFLSL 908 (1041)
T ss_pred HHhhhHHHHcCCchhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh------------h-HHHHHHHHHHHHHH
Confidence 9999999988877778889999999999999999999999998888765321 1 35788999999999
Q ss_pred HHHHHHHhcCCCcccchhhhhHHHHHHHHHhchhcccc--hhc--cc-CHHHHHHHHHHHhc-cCCcccCCchhhccccH
Q 001789 886 VSNVVYALLGVSAMSRVHKCATILQQLAAICSISERTS--GKA--IL-SWESLQGWLHSAVQ-VLPAEYLKQGETETLPP 959 (1013)
Q Consensus 886 v~~ll~~l~g~~~rs~~~~~~~iL~~L~~~~~~~~~~~--~~~--~~-~~~~~~~wl~~~l~-~~p~~~~~~~~~~~F~~ 959 (1013)
+...+..+.+..+.+++...+-.+..+.+...++.... +.+ .+ |...+...+...+. .||+ .++++...|..
T Consensus 909 l~~~~~~~~~~~~~~~f~~~~L~~~~l~~l~~~~~~~~~l~~~~~v~~n~~~L~e~i~~~l~~~f~~--~~~~~v~~~~~ 986 (1041)
T KOG2020|consen 909 LQKIIAVLTDTDHKAGFTKQVLKLQFLFRLVESAKLHTPLLQGNVVHGNQAFLREYIYGLLRPAFPN--LTDEQVRAFDI 986 (1041)
T ss_pred HHHHHHHHhccchhhcchHHHHHHHHHHHHHHhhhHHHhhccccccchHHHHHHHHHHHhhhhhchh--hchHHHHHHhH
Confidence 99999999999999999999999999888765442100 111 22 44555566655555 7887 67788888888
Q ss_pred HHHHH
Q 001789 960 VWLKA 964 (1013)
Q Consensus 960 ~l~~~ 964 (1013)
.++..
T Consensus 987 ~~~~~ 991 (1041)
T KOG2020|consen 987 GLFDE 991 (1041)
T ss_pred HHHHH
Confidence 88775
No 6
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.1e-38 Score=338.65 Aligned_cols=729 Identities=15% Similarity=0.142 Sum_probs=488.6
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchHHHHHHHHHHHHHhcCCCCCChHHHH
Q 001789 8 KVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKD 87 (1013)
Q Consensus 8 ~v~~av~~ly~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaa~tL~~kI~~~w~~l~~e~~~ 87 (1013)
++.+.++.- .+||++.|+.++.-|.+|+.-|+--.+...+|...+ +.+..+|--|...|++.++-+|...+.+...
T Consensus 14 ql~~lLk~s-~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~---~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~ 89 (885)
T KOG2023|consen 14 QLAQLLKNS-QSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAK---SEDVPTRSLAGLLLKNNVRGHYNSIPSEVLD 89 (885)
T ss_pred HHHHHHHhc-cCCChHHHHHHHHHHHHHhcccchhceeeEEEeccc---ccchhHHHHhhhhHhccccccccCCChHHHH
Confidence 444444432 268899999999999999999999998888887765 5678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHchhc--ccCchHHHHHHHhhcccCCCcchHHHHHHHhhchhccccccc
Q 001789 88 ALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQA 165 (1013)
Q Consensus 88 ~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~--~W~~~i~~li~~l~~~~~~~~~~~~~L~iL~~l~EE~~~~~~ 165 (1013)
.+|..++..+. ..++.||+..+..+..++-... .||+.++.+.+.+.+. +.+.++..+.-|+.+.|+... .
T Consensus 90 yiKs~~l~~lg---d~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~--d~n~~EgA~~AL~KIcEDsa~--~ 162 (885)
T KOG2023|consen 90 YIKSECLHGLG---DASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSP--DYNTCEGAFGALQKICEDSAQ--F 162 (885)
T ss_pred HHHHHHHhhcc---CchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCC--cccccchhHHHHHHHHhhhHH--H
Confidence 99999987765 4457899999888888887654 7999999999999874 446788889999999987542 1
Q ss_pred cccCCChHHHHHHHHHHHhhhhHHHHHHHHhhhhccCCCCCcchhhhHHHHHHHHHHHHhcccccccCcchhcccchHHH
Q 001789 166 SDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNF 245 (1013)
Q Consensus 166 ~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~L~cl~sWi~~~~~~~~~~~~~~~~~ll~~ 245 (1013)
.+ .+ -..+-+.--.|..++|..+ ++.+++..++.|++.+|... ...++
T Consensus 163 ld----s~---~~~rpl~~mipkfl~f~~h------------~spkiRs~A~~cvNq~i~~~-----------~qal~-- 210 (885)
T KOG2023|consen 163 LD----SD---VLTRPLNIMIPKFLQFFKH------------PSPKIRSHAVGCVNQFIIIQ-----------TQALY-- 210 (885)
T ss_pred Hh----hh---cccCchHHhHHHHHHHHhC------------CChhHHHHHHhhhhheeecC-----------cHHHH--
Confidence 11 10 0112233356676776653 23568999999999887732 11111
Q ss_pred HHHhccCCCcHHHHHHHHHHHhhcCCChhHHHHhhhhhhHHhhhcccccCCcHHHHhHHHHHHHHHHHhhhHHHHhcChh
Q 001789 246 VFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPE 325 (1013)
Q Consensus 246 l~~~L~~~~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~~~~~~l~~l~~~~~e~~~~~l~~~~~~ 325 (1013)
..+|-+.| .++. ...++|.++.+++|+.|+-+.|.++..++. +
T Consensus 211 ------------~~iD~Fle---------------------~lFa-lanD~~~eVRk~vC~alv~Llevr~dkl~p---h 253 (885)
T KOG2023|consen 211 ------------VHIDKFLE---------------------ILFA-LANDEDPEVRKNVCRALVFLLEVRPDKLVP---H 253 (885)
T ss_pred ------------HHHHHHHH---------------------HHHH-HccCCCHHHHHHHHHHHHHHHHhcHHhccc---c
Confidence 11111111 1111 125678889999999999999999888876 4
Q ss_pred HHHHHHHHHhcccCCCCCchhhhhcHHHHHHHHHHHhccchhhhhhhhhhhhhhHHHHHHHHHHHHHhcccCCCCC---C
Q 001789 326 ALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSF---N 402 (1013)
Q Consensus 326 ~~~ll~~ll~~~~~p~~d~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~li~k~~~p~~~~---~ 402 (1013)
...++++||..+.-+ |++|+-.+.|||..+++.- -..+...|++.+++.+++.+|.|.+++. .
T Consensus 254 l~~IveyML~~tqd~--dE~VALEACEFwla~aeqp------------i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~ 319 (885)
T KOG2023|consen 254 LDNIVEYMLQRTQDV--DENVALEACEFWLALAEQP------------ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLK 319 (885)
T ss_pred hHHHHHHHHHHccCc--chhHHHHHHHHHHHHhcCc------------CcHHHHHHHHHHHHHHHHccCccccccHHHhc
Confidence 457899999998876 7789999999999998742 3457889999999999999999965421 1
Q ss_pred -CCC-----------------------------------CCCCcchHHHH--HHHHHHHHHHHHHhhCchHHHHHHHhhh
Q 001789 403 -DDG-----------------------------------MVDLPDGLVQF--RMNLVELLVDICQLLRSATFIQKVFFGS 444 (1013)
Q Consensus 403 -~~~-----------------------------------~~d~~d~f~~f--R~~~~d~l~~~~~~l~~~~~l~~~~~~l 444 (1013)
+++ +.|++|.|.++ |+--+-.+.-..++.|.+ +|..++--+
T Consensus 320 ~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~e-lL~~l~PlL 398 (885)
T KOG2023|consen 320 NNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDE-LLPILLPLL 398 (885)
T ss_pred CccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHH-HHHHHHHHH
Confidence 000 00122223333 554444444455566654 455444332
Q ss_pred hcCCCCCCCchhhhHHHHHHHhhhhcccccCCccchHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhch
Q 001789 445 WGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQ 524 (1013)
Q Consensus 445 ~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p 524 (1013)
... ..+..|-..||+++++|+|||++-..-. .++|.++.++..+.+...+ .||..| |++++||+.|+...+
T Consensus 399 k~~-L~~~~W~vrEagvLAlGAIAEGcM~g~~-p~LpeLip~l~~~L~DKkp------lVRsIT-CWTLsRys~wv~~~~ 469 (885)
T KOG2023|consen 399 KEH-LSSEEWKVREAGVLALGAIAEGCMQGFV-PHLPELIPFLLSLLDDKKP------LVRSIT-CWTLSRYSKWVVQDS 469 (885)
T ss_pred HHH-cCcchhhhhhhhHHHHHHHHHHHhhhcc-cchHHHHHHHHHHhccCcc------ceeeee-eeeHhhhhhhHhcCC
Confidence 211 1246799999999999999999865332 2367777766666654431 267777 599999999998633
Q ss_pred --hchHHHHHHHHHhcCc--CchHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 001789 525 --TNARPLLLFLAAGISE--AVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILG 600 (1013)
Q Consensus 525 --~~L~~vl~~l~~~l~~--~~v~~~Aa~a~~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~ 600 (1013)
+|+.+++.-++..+-+ ..||.+||.||..+-++....|+ |+...+|.++...+..+ ..+....+|.|||.++.
T Consensus 470 ~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLV-p~l~~IL~~l~~af~kY--Q~KNLlILYDAIgtlAd 546 (885)
T KOG2023|consen 470 RDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELV-PYLEYILDQLVFAFGKY--QKKNLLILYDAIGTLAD 546 (885)
T ss_pred hHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhH-HHHHHHHHHHHHHHHHH--hhcceehHHHHHHHHHH
Confidence 7999999999988876 45999999999999999888886 44444555555555433 34567789999999998
Q ss_pred cCCcHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHHHHHHHHHHhhhcccccccccCCCCCCCCchHHHH
Q 001789 601 SVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFAL 680 (1013)
Q Consensus 601 ~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~ 680 (1013)
.+...-..+.|++.++.|++++|+.+-+.+. +. .-.++|++.+-+.++.++- .-+-++
T Consensus 547 svg~~Ln~~~YiqiLmPPLi~KW~~lsd~DK--------dL--------fPLLEClSsia~AL~~gF~------P~~~~V 604 (885)
T KOG2023|consen 547 SVGHALNKPAYIQILMPPLIEKWELLSDSDK--------DL--------FPLLECLSSIASALGVGFL------PYAQPV 604 (885)
T ss_pred HHHHhcCcHHHHHHhccHHHHHHHhcCcccc--------hH--------HHHHHHHHHHHHHHhcccc------ccCHHH
Confidence 8766555688999999999999998766432 22 3356777776666665431 112335
Q ss_pred HHHHHHHHHHHHHhh--hccchHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHhhhhcCCcchHHHHhHHHHHHhcC
Q 001789 681 LRVFWPMLEKLFRSE--HMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGH 758 (1013)
Q Consensus 681 ~~~i~~~l~~i~~~~--~~~~~~v~e~~c~~~k~~i~~~~~~~~~~l~~l~~~l~~~f~~~~~~~~~L~l~s~li~~~g~ 758 (1013)
+++++.++...++.. -.+++ - ...+.+ +..-+-|++.+.++...|+
T Consensus 605 y~Rc~~il~~t~q~~~~~~~~~---------------------------~----~~~pdk-dfiI~sLDL~SGLaegLg~ 652 (885)
T KOG2023|consen 605 YQRCFRILQKTLQLLAKVQQDP---------------------------T----VEAPDK-DFIIVSLDLLSGLAEGLGS 652 (885)
T ss_pred HHHHHHHHHHHHHHHHhccCCc---------------------------c----ccCCCc-ceEEEeHHHHhHHHHHhhh
Confidence 555555555443210 00100 0 001111 1345568999999999987
Q ss_pred CCCcchhHHH--HHHHHhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHHhhHHHHhcchhchHHHHHHHHHHhccCC
Q 001789 759 KDEYGPLFVT--TFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMH 836 (1013)
Q Consensus 759 ~~~~~~~i~~--l~~~l~~~t~l~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~l~~~~~~~l~~il~~~l~~l~~~e 836 (1013)
.- .+.+.+ +..-+.+| ..+.-||++++.|.|+..+.+.|+..+.+. +..++......+...+
T Consensus 653 ~i--e~Lva~snl~~lll~C----------~~D~~peVRQS~FALLGDltk~c~~~v~p~----~~~fl~~lg~Nl~~~~ 716 (885)
T KOG2023|consen 653 HI--EPLVAQSNLLDLLLQC----------LQDEVPEVRQSAFALLGDLTKACFEHVIPN----LADFLPILGANLNPEN 716 (885)
T ss_pred ch--HHHhhhccHHHHHHHH----------hccCChHHHHHHHHHHHHHHHHHHHhccch----HHHHHHHHhhcCChhh
Confidence 52 111111 11111122 336779999999999999999999998854 4555544444555555
Q ss_pred hhHHHHHHHHHHHHHhhhhhhccCCCCCCCCcchHHHHHHHHHhhhHHHHHHHHHHh-cCCCcccchhhhhHHHHHHHHH
Q 001789 837 RGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYAL-LGVSAMSRVHKCATILQQLAAI 915 (1013)
Q Consensus 837 ~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lv~~ll~~l-~g~~~rs~~~~~~~iL~~L~~~ 915 (1013)
..++..|+--+.++-.... .-+.++-..++..++..+ .-..|++.+++.+..+..|...
T Consensus 717 isv~nNA~WAiGeia~k~g--------------------~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~ 776 (885)
T KOG2023|consen 717 ISVCNNAIWAIGEIALKMG--------------------LKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYI 776 (885)
T ss_pred chHHHHHHHHHHHHHHHhc--------------------hhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhcc
Confidence 5555555443333222211 111123333444444442 3346888899999999999988
Q ss_pred hchhcccchhcccCHHHHHHHHH
Q 001789 916 CSISERTSGKAILSWESLQGWLH 938 (1013)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~~~wl~ 938 (1013)
+|+.- ..+.....+.|-.
T Consensus 777 ~Pe~v-----Ap~l~~f~~pWc~ 794 (885)
T KOG2023|consen 777 CPEEV-----APHLDSFMRPWCT 794 (885)
T ss_pred CHHhc-----chhHHHHHHHHHH
Confidence 87531 1234466788876
No 7
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-29 Score=290.76 Aligned_cols=600 Identities=17% Similarity=0.182 Sum_probs=423.2
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchHHHHHHHHHHHHHhcCCCCCChHH
Q 001789 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA 85 (1013)
Q Consensus 6 ~~~v~~av~~ly~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaa~tL~~kI~~~w~~l~~e~ 85 (1013)
+..+.+.+..|. +||++.|++|++-|+..-+++..-.....++.+ +.++++|.+||..+|+.+.+.|+.+++|.
T Consensus 3 ~~~l~qLl~~l~-spDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~-----~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~ 76 (1075)
T KOG2171|consen 3 SAPLEQLLQQLL-SPDNEVRRQAEEALETLAKTEPLLPALAHILAT-----SADPQVRQLAAVLLRKLLTKHWSRLSAEV 76 (1075)
T ss_pred hhHHHHHHHHhc-CCCchHHHHHHHHHHHhhcccchHHHHHHHHhc-----CCChHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 457999999987 678899999999999766665555555666665 35679999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHchhc--ccCchHHHHHHHhhcccCCCcchHHHHHHHhhchhccccc
Q 001789 86 KDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDS 163 (1013)
Q Consensus 86 ~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~--~W~~~i~~li~~l~~~~~~~~~~~~~L~iL~~l~EE~~~~ 163 (1013)
++.||.+|+..+.+ +..+.||+|+|.++|.++.... .||+.++-++++.++. ++...+..+.+|+.+|+-+++.
T Consensus 77 ~~siks~lL~~~~~--E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~--~~~~rE~al~il~s~~~~~~~~ 152 (1075)
T KOG2171|consen 77 QQSIKSSLLEIIQS--ETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSP--NPSLRESALLILSSLPETFGNT 152 (1075)
T ss_pred HHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCC--CcchhHHHHHHHHhhhhhhccc
Confidence 99999999999986 5567899999999999998764 5999999999999875 6778899999999999987631
Q ss_pred cccccCCChHHHHHHHHHHHhhhhHHHHHHHHhhhhccCCCCCcchhhhHHHHHHHHHHHHhcccccccCcchhcccchH
Q 001789 164 QASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLL 243 (1013)
Q Consensus 164 ~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~L~cl~sWi~~~~~~~~~~~~~~~~~ll 243 (1013)
+..+...+..++.+++.... ..++..+++++.+.+.+. +...+ ..
T Consensus 153 ------------------~~~~~~~l~~lf~q~~~d~s--------~~vr~~a~rA~~a~~~~~---~~~~~------~~ 197 (1075)
T KOG2171|consen 153 ------------------LQPHLDDLLRLFSQTMTDPS--------SPVRVAAVRALGAFAEYL---ENNKS------EV 197 (1075)
T ss_pred ------------------cchhHHHHHHHHHHhccCCc--------chHHHHHHHHHHHHHHHh---ccchH------HH
Confidence 12245567777777776532 238889999999998863 10011 00
Q ss_pred HHHHHhccCCCcHHHHHHHHHHHhhcCCChhHHHHhhhhhhHHhhhcccccCCcHHHHhHHHHHHHHHHHhhhHHHHhcC
Q 001789 244 NFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEAS 323 (1013)
Q Consensus 244 ~~l~~~L~~~~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~~~~~~l~~l~~~~~e~~~~~l~~~~ 323 (1013)
+....++|.+++..+. .+.++|.+.....-..|.++.++.++++-.
T Consensus 198 ----------------------------~~~~~llP~~l~vl~~----~i~~~d~~~a~~~l~~l~El~e~~pk~l~~-- 243 (1075)
T KOG2171|consen 198 ----------------------------DKFRDLLPSLLNVLQE----VIQDGDDDAAKSALEALIELLESEPKLLRP-- 243 (1075)
T ss_pred ----------------------------HHHHHHhHHHHHHhHh----hhhccchHHHHHHHHHHHHHHhhchHHHHH--
Confidence 1223456776664332 445677777888889999999998888865
Q ss_pred hhHHHHHHHHHhcccCCCCCchhhhhcHHHHHHHHHHHhccchhhhhhhhhhhhhhHHHHHHHHHHHHHhcccCCC---C
Q 001789 324 PEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDES---S 400 (1013)
Q Consensus 324 ~~~~~ll~~ll~~~~~p~~d~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~li~k~~~p~~---~ 400 (1013)
.+..++++.+.+.+...-|..+...+++|-..+.+.- +.......++..+|+.+++.-|. |.+ +
T Consensus 244 -~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~A-----------p~~~k~~~~~~~~lv~~~l~~mt-e~~~D~e 310 (1075)
T KOG2171|consen 244 -HLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYA-----------PAMCKKLALLGHTLVPVLLAMMT-EEEDDDE 310 (1075)
T ss_pred -HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhh-----------HHHhhhchhhhccHHHHHHHhcC-Ccccchh
Confidence 4567888888887765446678889999988888752 22334445555666666655553 222 2
Q ss_pred CCCCCCCCCcchHHHHHHHHHH-HHHHHHHhhCchHHHHHHHhhhhcCCCCCCCchhhhHHHHHHHhhhhcccccCCccc
Q 001789 401 FNDDGMVDLPDGLVQFRMNLVE-LLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFD 479 (1013)
Q Consensus 401 ~~~~~~~d~~d~f~~fR~~~~d-~l~~~~~~l~~~~~l~~~~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~ 479 (1013)
|.++++ .++|+ .+--+.++. .+.....-||++.++..+++.+.. ...+.+|....|+|.+|++++|++.+.... .
T Consensus 311 w~~~d~-~ded~-~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~-~l~S~~w~~R~AaL~Als~i~EGc~~~m~~-~ 386 (1075)
T KOG2171|consen 311 WSNEDD-LDEDD-EETPYRAAEQALDRLALHLGGKQVLPPLFEALEA-MLQSTEWKERHAALLALSVIAEGCSDVMIG-N 386 (1075)
T ss_pred hccccc-ccccc-ccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHcccHHHHHH-H
Confidence 332111 12222 121222332 333334447887777766665421 113678999999999999999999753221 3
Q ss_pred hHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHH-----hchhchHHHHHHHHHhcCcCchHHHHHHHHHHH
Q 001789 480 FSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWIS-----AFQTNARPLLLFLAAGISEAVSSNACASALRKI 554 (1013)
Q Consensus 480 l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~-----~~p~~L~~vl~~l~~~l~~~~v~~~Aa~a~~~l 554 (1013)
++.|++++....++|+++ ||+.+ |+.||+.+.=|. .|++.+++.|-.+...-.+++|+.+||.|+..+
T Consensus 387 l~~Il~~Vl~~l~Dphpr------Vr~AA-~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf 459 (1075)
T KOG2171|consen 387 LPKILPIVLNGLNDPHPR------VRYAA-LNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNF 459 (1075)
T ss_pred HHHHHHHHHhhcCCCCHH------HHHHH-HHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHH
Confidence 788999888888888765 68866 699999987553 477888888888888778889999999999999
Q ss_pred HHHhhcccCCCccHHHHHH-HHHHHHhcCCChhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 001789 555 CEDASALIDEPSNLEILMW-IGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNH 633 (1013)
Q Consensus 555 c~~c~~~l~~~~~~~~l~~-~~~~l~~~~l~~~~~~~l~eai~~ii~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~ 633 (1013)
.++|.+....| +++.|++ ....+. ..-+...++.++.+||+|..+... ....|..+++ .-|.+++.++.+.
T Consensus 460 ~E~~~~~~l~p-YLd~lm~~~l~~L~-~~~~~~v~e~vvtaIasvA~AA~~--~F~pY~d~~M----p~L~~~L~n~~~~ 531 (1075)
T KOG2171|consen 460 SEECDKSILEP-YLDGLMEKKLLLLL-QSSKPYVQEQAVTAIASVADAAQE--KFIPYFDRLM----PLLKNFLQNADDK 531 (1075)
T ss_pred HHhCcHHHHHH-HHHHHHHHHHHHHh-cCCchhHHHHHHHHHHHHHHHHhh--hhHhHHHHHH----HHHHHHHhCCCch
Confidence 99999877654 7777776 444432 233678899999999999977643 2456666665 3445555554322
Q ss_pred CCCCCchhhHHHHHHHHHHHHhhhcccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Q 001789 634 SLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLA 713 (1013)
Q Consensus 634 ~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~k~~ 713 (1013)
+.+ . | -...++|++.+.+.++ .+++.+.-++++.++......--..|....+-....+.++
T Consensus 532 d~r---~-----L--rgktmEcisli~~AVG---------ke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warm 592 (1075)
T KOG2171|consen 532 DLR---E-----L--RGKTMECLSLIARAVG---------KEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARM 592 (1075)
T ss_pred hhH---H-----H--HhhHHHHHHHHHHHhh---------hhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHH
Confidence 111 1 1 1234777776666543 1345666677777766654221224555667777778888
Q ss_pred HHHhchhhhhhHHHHHHHHHHh
Q 001789 714 IQSSGQHFVTLLPQVLDCLSTN 735 (1013)
Q Consensus 714 i~~~~~~~~~~l~~l~~~l~~~ 735 (1013)
-+.+|++|.|++|.++..+...
T Consensus 593 c~ilg~~F~p~L~~Vmppl~~t 614 (1075)
T KOG2171|consen 593 CRILGDDFAPFLPVVMPPLLKT 614 (1075)
T ss_pred HHHhchhhHhHHHHHhHHHHHh
Confidence 8889999999999988877653
No 8
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=5.6e-21 Score=211.78 Aligned_cols=598 Identities=14% Similarity=0.119 Sum_probs=377.9
Q ss_pred CCChHHHHHHHHHHHHHhcCh--HHHHHHHHhhccCCCCCCccchHHHHHHHHHHHHHh-----------cCCCCCChHH
Q 001789 19 DTESCNRVAANQWLVQFQQTD--AAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQ-----------NEGYYLQSAA 85 (1013)
Q Consensus 19 ~~d~~~~~~A~~~L~~fq~s~--~aW~~~~~LL~~~~~~~~~~~~~~ffaa~tL~~kI~-----------~~w~~l~~e~ 85 (1013)
+||+..++.|+++|.++|+.+ .--....+.|.+++ .+...|.-|+.+||+-+. .+|-++|.|.
T Consensus 12 SpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~----~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~ 87 (859)
T KOG1241|consen 12 SPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDN----SSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEI 87 (859)
T ss_pred CCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccC----CcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHH
Confidence 689999999999999999874 33444555666554 457999999999999875 5699999999
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHchh-c--ccCchHHHHHHHhhcccCCCcchHHHHHHHhhchhcccc
Q 001789 86 KDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA-V--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVID 162 (1013)
Q Consensus 86 ~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~-~--~W~~~i~~li~~l~~~~~~~~~~~~~L~iL~~l~EE~~~ 162 (1013)
++++|+.++..|.. ..+.+.+--+.++|.++.-. | .||+++..++......++. ...+..|+-+..++|++.
T Consensus 88 reqVK~~il~tL~~---~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~-~~k~~slealGyice~i~- 162 (859)
T KOG1241|consen 88 REQVKNNILRTLGS---PEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQAS-MVKESSLEALGYICEDID- 162 (859)
T ss_pred HHHHHHHHHHHcCC---CCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccch-HHHHHHHHHHHHHHccCC-
Confidence 99999999988863 22334455666777777544 3 6999999999988765432 345789999999999874
Q ss_pred ccccccCCChHHHHHHHHHHHhhhhHHHHHHHHhhhhccCCCCCcchhhhHHHHHHHHHHHHhcccccccCcchhcccch
Q 001789 163 SQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPL 242 (1013)
Q Consensus 163 ~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~L~cl~sWi~~~~~~~~~~~~~~~~~l 242 (1013)
++ .+......|+.-+.+..... + ++..++..+++|+-.-+.+... ++.-+ ...+-+
T Consensus 163 --------pe--------vl~~~sN~iLtaIv~gmrk~---e---~s~~vRLaa~~aL~nsLef~~~-nF~~E-~ern~i 218 (859)
T KOG1241|consen 163 --------PE--------VLEQQSNDILTAIVQGMRKE---E---TSAAVRLAALNALYNSLEFTKA-NFNNE-MERNYI 218 (859)
T ss_pred --------HH--------HHHHHHhHHHHHHHhhcccc---C---CchhHHHHHHHHHHHHHHHHHH-hhccH-hhhcee
Confidence 11 23444555554333332221 1 3456889999999876665310 11111 112234
Q ss_pred HHHHHHhccCC--CcHHHHHHHHHHHhhcCCChhHHHHhhhhhhHHhhhcccccCCcHHHHhHHHHHHHHHHHhhhHHHH
Q 001789 243 LNFVFNSLQVQ--SSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIV 320 (1013)
Q Consensus 243 l~~l~~~L~~~--~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~~~~~~l~~l~~~~~e~~~~~l~ 320 (1013)
++.+.+.-+.| ++.-+|..||+.|.+.+-++ +-+.+.
T Consensus 219 MqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~---m~~yM~-------------------------------------- 257 (859)
T KOG1241|consen 219 MQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEF---MEPYME-------------------------------------- 257 (859)
T ss_pred eeeeeecccCCcHHHHHHHHHHHHHHHHHHHHH---HHHHHH--------------------------------------
Confidence 55555555544 44567777777776654111 111110
Q ss_pred hcChhHHHHHHHHHhcccCCCCCchhhhhcHHHHHHHHHHHhccc----hhhhhhhh-hhhhhhHHHHHHHHHHHHHhcc
Q 001789 321 EASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLD----ASIAKNKK-HVEDMFFSVFSALLDALLLRAQ 395 (1013)
Q Consensus 321 ~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~l~FW~~l~~~l~~~~----~~~~~~~~-~~~~~~~~~~~~L~~~li~k~~ 395 (1013)
..++..-+.-+.-+ +++|.-.+.|||...+++=.++. ......++ ......+.-+..++.++++.+.
T Consensus 258 ------~alfaitl~amks~--~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~ 329 (859)
T KOG1241|consen 258 ------QALFAITLAAMKSD--NDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLT 329 (859)
T ss_pred ------HHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHH
Confidence 01122222222222 56899999999998776532210 00000011 1122234456678888888887
Q ss_pred c-CCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHhhCchHHHHHHHhhhhcCCCCCCCchhhhHHHHHHHhhhhccccc
Q 001789 396 V-DESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQE 474 (1013)
Q Consensus 396 ~-p~~~~~~~~~~d~~d~f~~fR~~~~d~l~~~~~~l~~~~~l~~~~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~ 474 (1013)
. +++.. +|++.-. +..+-+|+-.....|++ ++.+++.-+.++ -.+.+|+..||+.+++|||-++-.++
T Consensus 330 kqde~~d--------~DdWnp~-kAAg~CL~l~A~~~~D~-Iv~~Vl~Fiee~-i~~pdwr~reaavmAFGSIl~gp~~~ 398 (859)
T KOG1241|consen 330 KQDEDDD--------DDDWNPA-KAAGVCLMLFAQCVGDD-IVPHVLPFIEEN-IQNPDWRNREAAVMAFGSILEGPEPD 398 (859)
T ss_pred hCCCCcc--------cccCcHH-HHHHHHHHHHHHHhccc-chhhhHHHHHHh-cCCcchhhhhHHHHHHHhhhcCCchh
Confidence 6 33322 2233222 34455666666666764 566554332211 13678999999999999997765433
Q ss_pred CCccchHHHHHHH---HHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh---chhchHHHHHHHHHhcCc-CchHHHH
Q 001789 475 GQAFDFSVIMQLV---AVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA---FQTNARPLLLFLAAGISE-AVSSNAC 547 (1013)
Q Consensus 475 ~~~~~l~~i~~~l---~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~---~p~~L~~vl~~l~~~l~~-~~v~~~A 547 (1013)
.. .|.+.+.+ ..+-.+|.. .++-|+ -+.+|+.++++.. |..++.+.+..+..+|++ |++...+
T Consensus 399 ~L---t~iV~qalp~ii~lm~D~sl------~VkdTa-AwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~ 468 (859)
T KOG1241|consen 399 KL---TPIVIQALPSIINLMSDPSL------WVKDTA-AWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNV 468 (859)
T ss_pred hh---hHHHhhhhHHHHHHhcCchh------hhcchH-HHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHH
Confidence 22 23333332 233334432 145444 5999999998864 667999999999999996 8999999
Q ss_pred HHHHHHHHHHhhcccCCC----ccHHHHHHHHHHHHh--cC---CChhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHH
Q 001789 548 ASALRKICEDASALIDEP----SNLEILMWIGEALEK--RH---LPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSS 618 (1013)
Q Consensus 548 a~a~~~lc~~c~~~l~~~----~~~~~l~~~~~~l~~--~~---l~~~~~~~l~eai~~ii~~~p~~~~~~~~l~~ll~p 618 (1013)
|-||..|.+.|..-...+ +..|++..++..|.. .. -+..-|...|+|++.+|...|.+ ....+..+..-
T Consensus 469 CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~--vy~~v~~~~l~ 546 (859)
T KOG1241|consen 469 CWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDD--VYPMVQKLTLV 546 (859)
T ss_pred HHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHH--HHHHHHHHHHH
Confidence 999999999998754332 233566666666532 22 23456888999999999998864 36777888888
Q ss_pred HHHHHHhhhcccCCCCCCCCchhhHHHHHHHHHHHHhhhcccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhcc
Q 001789 619 SYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHME 698 (1013)
Q Consensus 619 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~ 698 (1013)
++.+|.+.++...- ...+ .....-|++.+ -..|..+.|-+.++ +..+-.+++..+.++++ . ..
T Consensus 547 il~kl~q~i~~~~l--~~~d-r~q~~eLQs~L--c~~Lq~i~rk~~~~----------~~~~~d~iM~lflri~~-s-~~ 609 (859)
T KOG1241|consen 547 ILEKLDQTISSQIL--SLAD-RAQLNELQSLL--CNTLQSIIRKVGSD----------IREVSDQIMGLFLRIFE-S-KR 609 (859)
T ss_pred HHHHHHHHHHHHhc--cHhh-HHHHHHHHHHH--HHHHHHHHHHcccc----------chhHHHHHHHHHHHHHc-C-Cc
Confidence 89999998883210 0111 11111122211 12344555554431 23345677777778776 2 45
Q ss_pred chHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHhhhh
Q 001789 699 NGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVS 738 (1013)
Q Consensus 699 ~~~v~e~~c~~~k~~i~~~~~~~~~~l~~l~~~l~~~f~~ 738 (1013)
+..+-|.+.-.+...+..+|..|..++|.+..++..+...
T Consensus 610 s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n 649 (859)
T KOG1241|consen 610 SAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSN 649 (859)
T ss_pred cccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhc
Confidence 6667788888889999999999999999999988876643
No 9
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=7e-17 Score=185.19 Aligned_cols=713 Identities=13% Similarity=0.133 Sum_probs=401.6
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchHHHHHHHHHHHHHhcCCCCC------
Q 001789 8 KVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYL------ 81 (1013)
Q Consensus 8 ~v~~av~~ly~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaa~tL~~kI~~~w~~l------ 81 (1013)
.+.+++.+-- .+||..|+.|++.|.++++.|.--..+.++...+. .+..||.-||.-||++|.+.|..-
T Consensus 5 ~l~~~~~~T~-d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~----~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~ 79 (1010)
T KOG1991|consen 5 SLLQIFRATI-DSDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDG----VPLPVRQAAAIYLKNKITKSWSSHEAPGRP 79 (1010)
T ss_pred HHHHHHHHhc-CCChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccC----CchhHHHHHHHHHHHHHHhcCCccCCCCCc
Confidence 4666666644 56789999999999999999999999999998765 358899999999999999999854
Q ss_pred ---ChHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHchh-c-ccCchHHHHHHHhhcccCCCcchHHHHHHHhhc
Q 001789 82 ---QSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA-V-EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVL 156 (1013)
Q Consensus 82 ---~~e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~-~-~W~~~i~~li~~l~~~~~~~~~~~~~L~iL~~l 156 (1013)
+++++..+|+.|+..+.+ +|..+|.++..++-.+.... + .||+.++-+-..+++. +.+.....|..|..|
T Consensus 80 ~~I~e~dk~~irenIl~~iv~---~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~--~~~~vy~aLl~l~qL 154 (1010)
T KOG1991|consen 80 FGIPEEDKAVIRENILETIVQ---VPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQ--DANHVYGALLCLYQL 154 (1010)
T ss_pred CCCChHHHHHHHHHHHHHHHh---CchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCc--chhhHHHHHHHHHHH
Confidence 789999999999999984 68999999999998777664 4 7999999999999874 334456666666666
Q ss_pred hhccccccccccCCChHHHHHHHHHHHhhhhHHHHHHHHhhhhccCCCCCcchhhhHHHHHHHHHHHHhcccccccCcch
Q 001789 157 PEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGS 236 (1013)
Q Consensus 157 ~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~L~cl~sWi~~~~~~~~~~~~ 236 (1013)
..-- + . -..++|.-+...+...+|.+++.....+..... ....+...+||.+.+-+.| ++|...
T Consensus 155 ~k~y---e---~-k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~-----~s~el~klIlKifks~~~~----~LP~~L 218 (1010)
T KOG1991|consen 155 FKTY---E---W-KKDEERQPLGEAVEELFPDILQIFNGLLSQESY-----QSVELQKLILKIFKSLIYY----ELPLEL 218 (1010)
T ss_pred HHHH---h---h-ccccccccHHHHHHHHHHHHHHHHHhhccccch-----HHHHHHHHHHHHHHHHHHH----hCCHHh
Confidence 5321 1 1 123466667777777899999998888766422 3456888999999999987 455554
Q ss_pred hcccchHHHHHHhccCCCcHHHHHHHHHHHhhcCCC------------------hhHHHHhhhhhhHHhhhcccccC-Cc
Q 001789 237 LAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEG------------------LPQALLCRVPFLKELLLLPALTD-GD 297 (1013)
Q Consensus 237 ~~~~~ll~~l~~~L~~~~~~~~a~~~l~eil~~~~~------------------~~~~l~~~~~~l~~~~~~~~~~~-~d 297 (1013)
.+++.+...++.+..++++.-. ..+..+..+.-+.++|-.+.... +.
T Consensus 219 --------------~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y 284 (1010)
T KOG1991|consen 219 --------------SAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEY 284 (1010)
T ss_pred --------------hCchhHHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhh
Confidence 3556666777777777765410 01222221212222332111111 11
Q ss_pred HHHHhHHHHHHHHHHHhhhHHHHhcChhHHHHHHHHHhcccCCCCCchhhhhcHHHHHHHHHHHhccchhhhhhhhhhhh
Q 001789 298 EKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVED 377 (1013)
Q Consensus 298 ~~~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~ 377 (1013)
.++...+++- +...+.+ .++..++.--. ..+- ...|-..++.|... ..+ ....+.
T Consensus 285 ~~Fa~~f~~n-------~~~~ile---~~lk~l~~~~~-~~yl--s~rvl~~~l~fl~~----~Vs--------~~~twk 339 (1010)
T KOG1991|consen 285 KEFAQMFLKN-------FAQGILE---VFLKILEQWRQ-QLYL--SDRVLYYLLNFLEQ----CVS--------HASTWK 339 (1010)
T ss_pred HHHHHHHHHH-------HHHHHHH---HHHHHHHHHHh-cccC--CHHHHHHHHHHHHH----hcc--------HHHHHH
Confidence 2222222211 1221111 11111111111 1110 12333344444221 110 124577
Q ss_pred hhHHHHHHHHHHHH-HhcccCCCCCCCCCCCCCcchHHHH-HH-------------HHHHHHHHHHHhhCchH---HH--
Q 001789 378 MFFSVFSALLDALL-LRAQVDESSFNDDGMVDLPDGLVQF-RM-------------NLVELLVDICQLLRSAT---FI-- 437 (1013)
Q Consensus 378 ~~~~~~~~L~~~li-~k~~~p~~~~~~~~~~d~~d~f~~f-R~-------------~~~d~l~~~~~~l~~~~---~l-- 437 (1013)
..+|++.-++..++ .-|.+-+++. +.|+ +|-.+| |+ ...+++..++.=-|.+. ++
T Consensus 340 ll~PHl~~ii~~vIFPlmc~~d~de-elwe----~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F 414 (1010)
T KOG1991|consen 340 LLKPHLQVIIQDVIFPLMCFNDEDE-ELWE----EDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETLPKILSF 414 (1010)
T ss_pred HhhhHHHHHHHHhhhhhcCCCcccH-HHHh----cCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhhhhhHHHH
Confidence 88899877665544 3333422221 1342 122233 22 23355555555444432 22
Q ss_pred -HHHHhhhhcCCCCCCCchhhhHHHHHHHhhhhcccccCCccchHHHHH-HHHH--hccCchhhhhhHHHHHHHHHHHHH
Q 001789 438 -QKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQ-LVAV--LSASRSEELKGFMHIVYRSLADVI 513 (1013)
Q Consensus 438 -~~~~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~-~l~~--l~~~~~~~~~~~~~v~~~t~~~~i 513 (1013)
.+++.+...++....+-+..|.||+.++++++.+.+... ....++ +|.+ +|.... ..++ +|+++ |+++
T Consensus 415 ~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~---~~~~mE~flv~hVfP~f~s--~~g~--Lrara-c~vl 486 (1010)
T KOG1991|consen 415 IVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSP---YKSQMEYFLVNHVFPEFQS--PYGY--LRARA-CWVL 486 (1010)
T ss_pred HHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCc---hHHHHHHHHHHHhhHhhcC--chhH--HHHHH-HHHH
Confidence 233333222223345789999999999999987775332 233343 2221 333322 1222 67777 5999
Q ss_pred HhhHHHHHhchhchHHHHHHHHHhcC-cCc--hHHHHHHHHHHHHHHhhcc-cCCCccHHHHHHHHHHHHhcCCChhhHH
Q 001789 514 GSYSKWISAFQTNARPLLLFLAAGIS-EAV--SSNACASALRKICEDASAL-IDEPSNLEILMWIGEALEKRHLPLEDEE 589 (1013)
Q Consensus 514 g~y~~wl~~~p~~L~~vl~~l~~~l~-~~~--v~~~Aa~a~~~lc~~c~~~-l~~~~~~~~l~~~~~~l~~~~l~~~~~~ 589 (1013)
++|++-=-++|..+..++....++|. +++ |+--||-|++.+...|... ....++.|.+++-.-.+.+ ..+.++..
T Consensus 487 ~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~n-e~End~Lt 565 (1010)
T KOG1991|consen 487 SQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSN-EVENDDLT 565 (1010)
T ss_pred HHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHH-hcchhHHH
Confidence 99996433578889999999999999 444 8999999999999999864 1112244444432222222 23455555
Q ss_pred HHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHHHHHHHHHHhhhcccccccccCCC
Q 001789 590 EVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPT 669 (1013)
Q Consensus 590 ~l~eai~~ii~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~ 669 (1013)
.+++.+ +...+. + ...+--.+++-+.....+++....+.+...+.. ++ .+..+|+.+.+++.++..
T Consensus 566 ~vme~i---V~~fse-E-lsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk----~i-aA~GiL~Ti~Til~s~e~---- 631 (1010)
T KOG1991|consen 566 NVMEKI---VCKFSE-E-LSPFAVELCQNLAETFLKVLQTSEDEDESDDDK----AI-AASGILRTISTILLSLEN---- 631 (1010)
T ss_pred HHHHHH---HHHHHH-h-hchhHHHHHHHHHHHHHHHHhccCCCCccchHH----HH-HHHHHHHHHHHHHHHHhc----
Confidence 555553 333332 2 344555677777777777777532211111111 11 366778888888777653
Q ss_pred CCCCCch-HHH-HHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHhhhhcC--CcchH
Q 001789 670 NPAGDDP-IFA-LLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQ--NHECY 745 (1013)
Q Consensus 670 ~~~~~~p-~~~-~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~k~~i~~~~~~~~~~l~~l~~~l~~~f~~~~--~~~~~ 745 (1013)
+| ++. .-..++|++..++.. +-.++.|.+|.+... .+.+.+++.|.+=.+.+.+.+.|.... -.+.+
T Consensus 632 -----~p~vl~~le~~~l~vi~~iL~~---~i~dfyeE~~ei~~~-~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~ 702 (1010)
T KOG1991|consen 632 -----HPEVLKQLEPIVLPVIGFILKN---DITDFYEELLEIVSS-LTFLSKEISPIMWGLLELILEVFQDDGIDYFTDM 702 (1010)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHhh-hhhhhcccCHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 33 222 224567777777653 334567777766554 233333333333334444444443320 01112
Q ss_pred HHHhHHHHHHhcCCCCcc-hhHHHHHHHHhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHHhhHHHHhcchhchHHH
Q 001789 746 IRTASVVIEEFGHKDEYG-PLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVS 824 (1013)
Q Consensus 746 L~l~s~li~~~g~~~~~~-~~i~~l~~~l~~~t~l~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~l~~~~~~~l~~i 824 (1013)
+..+...|. +|...-.. +...+.+..++. ..+.+. -.+++| .+..+.++..++..|-+ .+. ..++.+
T Consensus 703 ~~~l~N~vt-~g~~~~~s~~~y~~il~~i~~----~~l~~e--~~~D~d-~~~a~kLle~iiL~~kg-~~d---q~iplf 770 (1010)
T KOG1991|consen 703 MPALHNYVT-YGTPSLLSNPDYLQILLEIIK----KVLTSE--NGEDSD-CESACKLLEVIILNCKG-LLD---QYIPLF 770 (1010)
T ss_pred HHHHhhhee-eCchhhhccchHHHHHHHHHH----HHHcCC--CCchHH-HHHHHHHHHHHHHHhcC-cHh---hHhHHH
Confidence 222222221 23321111 111111111111 123331 123343 34456777777777766 332 356666
Q ss_pred HHHHHHHhcc
Q 001789 825 FQKAAICCTA 834 (1013)
Q Consensus 825 l~~~l~~l~~ 834 (1013)
+..++..++.
T Consensus 771 ~~~a~~~l~~ 780 (1010)
T KOG1991|consen 771 LELALSRLTR 780 (1010)
T ss_pred HHHHHHHHhc
Confidence 6666666654
No 10
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=99.85 E-value=2.4e-19 Score=194.38 Aligned_cols=243 Identities=12% Similarity=0.153 Sum_probs=202.2
Q ss_pred hhhHHHHHHHHHHhhhhcCC---cchHHHHhHHHHHHhcCCCCcchhHHHHHHHHhhHHHHHHhhcCCCCCCCCchHHHH
Q 001789 722 VTLLPQVLDCLSTNFVSFQN---HECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAY 798 (1013)
Q Consensus 722 ~~~l~~l~~~l~~~f~~~~~---~~~~L~l~s~li~~~g~~~~~~~~i~~l~~~l~~~t~l~~l~~~~~~~~~pD~~~~~ 798 (1013)
..++||+++.++.+|..+.| .+.+|++.+++|.+.|+. ..+.+..+++.+.++| +.++.+ ++.++||++..|
T Consensus 66 ~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~--~~~~v~~I~~~vf~~T-l~MI~~--d~~~yPe~r~~f 140 (319)
T PF08767_consen 66 NNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGEL--IQPQVPQILEAVFECT-LPMINK--DFEEYPEHRVNF 140 (319)
T ss_dssp HHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGG--CCCCHHHHHHHHHHHH-HHHHSS--TSSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHH-HHHHHh--hhhhChHHHHHH
Confidence 46899999999999997643 677999999999999973 3345666667777898 899975 789999999999
Q ss_pred HHHHHHHHHHhhHHHHhcchhchHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhhhhhccCCCCCCCCcchHHHHHHHH
Q 001789 799 TNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVI 878 (1013)
Q Consensus 799 f~l~~~~l~~~p~~l~~~~~~~l~~il~~~l~~l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (1013)
|.|+..++++||..++..|++.+..++++.+||++++++++...+++.+.+++++... . ..+..++|+
T Consensus 141 f~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~------~------~~~~~~~F~ 208 (319)
T PF08767_consen 141 FKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK------T------NPEFANQFY 208 (319)
T ss_dssp HHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-------------SHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh------c------CHHHHHHHH
Confidence 9999999999999999888889999999999999999999999999999999988753 0 137789999
Q ss_pred HhhhHHHHHHHHHHhcCCCcccchhhhhHHHHHHHHHhchhcccc---hh-cccCHHHHHHHHHHHhc-cCCcccCCchh
Q 001789 879 SHSGEGLVSNVVYALLGVSAMSRVHKCATILQQLAAICSISERTS---GK-AILSWESLQGWLHSAVQ-VLPAEYLKQGE 953 (1013)
Q Consensus 879 ~~~g~~Lv~~ll~~l~g~~~rs~~~~~~~iL~~L~~~~~~~~~~~---~~-~~~~~~~~~~wl~~~l~-~~p~~~~~~~~ 953 (1013)
++|+..++..++..+++..|+++++.++.+|+.|+.....+. +. +. ...|...+.+|+.+.|. .||+ +++++
T Consensus 209 ~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ve~~~-i~~~l~~~~~~n~~~v~~~i~~~L~~~Fp~--l~~~q 285 (319)
T PF08767_consen 209 QQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRLVESGS-IQVPLFDPGMSNQEFVSEYIANLLSEAFPN--LSPKQ 285 (319)
T ss_dssp HHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHHHHTT--SSSSSSSTTT-HHHHHHHHHHHHHHHH-TT--S-HHH
T ss_pred HHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHccc-ccccccCCCCccHHHHHHHHHHHHHHhCCC--CCHHH
Confidence 999999999999999999999999999999999997643221 11 11 34567889999999998 8999 99999
Q ss_pred hccccHHHHHHHhhhhhhhhhccccCCCCCCCCccccccchHHHHHHHHHHHhhcC
Q 001789 954 TETLPPVWLKALAGAASDYLESMSCNGGNSNYGHMQGKGGRVLKRIIREFADSHRN 1009 (1013)
Q Consensus 954 ~~~F~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~rdF~~~~rg 1009 (1013)
.+.|+..+++. ..+..+||.++|||.++.|-
T Consensus 286 i~~fv~~Lf~~-------------------------~~d~~~Fk~~lrDFlI~~ke 316 (319)
T PF08767_consen 286 IENFVQGLFEL-------------------------NNDPEKFKTHLRDFLIQLKE 316 (319)
T ss_dssp HHHHHHHHHHT-------------------------TT-HHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHh-------------------------cCCHHHHHHHHHHHhhhhhh
Confidence 99999999876 35689999999999998763
No 11
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.85 E-value=9e-15 Score=157.28 Aligned_cols=619 Identities=13% Similarity=0.103 Sum_probs=342.8
Q ss_pred CCChHHHHHHHHHHHHHhcChHHH--HHHHHhhccCCCCCCccchHHHHHHHHHHHHHh-----------cCCCCCChHH
Q 001789 19 DTESCNRVAANQWLVQFQQTDAAW--EIATSILTSDRQSFLTDFEVEFFAAQILKRKIQ-----------NEGYYLQSAA 85 (1013)
Q Consensus 19 ~~d~~~~~~A~~~L~~fq~s~~aW--~~~~~LL~~~~~~~~~~~~~~ffaa~tL~~kI~-----------~~w~~l~~e~ 85 (1013)
+|||..|..|++.|.++|+.+-.= .+..+.|...+ ++.+.|..|+.+|++-+. .+|-.++.|.
T Consensus 16 spD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~n----s~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~ 91 (858)
T COG5215 16 SPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLN----SNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHES 91 (858)
T ss_pred CCCCCccccHHHHHHHhccccHHHHHHHHHHHHhccC----CcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHH
Confidence 679999999999999999875432 23344454443 457999999999999886 4599999999
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHchh-c--ccCchHHHHHHHhhcccCCCcchHHHHHHHhhchhcccc
Q 001789 86 KDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA-V--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVID 162 (1013)
Q Consensus 86 ~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~-~--~W~~~i~~li~~l~~~~~~~~~~~~~L~iL~~l~EE~~~ 162 (1013)
++++|...+..+.. ..+-+-+--+..+++++-.. + .||+++.+++...+..+. .+.....|.++....|-..
T Consensus 92 k~qvK~~al~aL~s---~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp-~~~k~~sl~~~gy~ces~~- 166 (858)
T COG5215 92 KEQVKGMALRALKS---PEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQP-VSGKCESLGICGYHCESEA- 166 (858)
T ss_pred HHHHHHHHHHHhcC---CccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCc-hHhHHHHHHHHHHHhhccC-
Confidence 99999999888863 22334455555666666443 3 699999999998876542 2233455666776666431
Q ss_pred ccccccCCChHHHHHHHHHHHhhhhHH-HHHHHHhhhhccCCCCCcchhhhHHHHHHHHHHHHhcccccccCcchhcccc
Q 001789 163 SQASDCNISSAHRSQYGQELLSHTPMV-VEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHP 241 (1013)
Q Consensus 163 ~~~~~~~l~~~~r~~~~~~l~~~~~~v-~~~l~~~l~~~~~~~~~~~~~~l~~~~L~cl~sWi~~~~~~~~~~~~~~~~~ 241 (1013)
+ +.+.+....+ +.++. ....++ ++..++..+|+|+-.=+-+... .+.-+ ....-
T Consensus 167 --------P--------e~li~~sN~il~aiv~----ga~k~e---t~~avRLaaL~aL~dsl~fv~~-nf~~E-~erNy 221 (858)
T COG5215 167 --------P--------EDLIQMSNVILFAIVM----GALKNE---TTSAVRLAALKALMDSLMFVQG-NFCYE-EERNY 221 (858)
T ss_pred --------H--------HHHHHHhhHHHHHHHH----hhcccC---chHHHHHHHHHHHHHHHHHHHH-hhcch-hhhch
Confidence 1 1233322222 22322 222212 3457889999998752221100 11111 11122
Q ss_pred hHHHHHHhccCC--CcHHHHHHHHHHHhhcCCChhHHHHhhhhhhHHhhhcccccCCcHHHHhHHHHHHHHHHHhhhHHH
Q 001789 242 LLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLI 319 (1013)
Q Consensus 242 ll~~l~~~L~~~--~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~~~~~~l~~l~~~~~e~~~~~l 319 (1013)
+++.+.+..+.+ ++.-+|..|++.|...+-++.+. ++
T Consensus 222 ~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~-----------------------------------------ym 260 (858)
T COG5215 222 FMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQS-----------------------------------------YM 260 (858)
T ss_pred hheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------HH
Confidence 444444444322 34445556665555433111110 01
Q ss_pred HhcChhHHHHHHHHHhcccCCCCCchhhhhcHHHHHHHHHHHhccc--hhhhhhhhh-hhhhhHHHHHHHHHHHHHhccc
Q 001789 320 VEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLD--ASIAKNKKH-VEDMFFSVFSALLDALLLRAQV 396 (1013)
Q Consensus 320 ~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~l~FW~~l~~~l~~~~--~~~~~~~~~-~~~~~~~~~~~L~~~li~k~~~ 396 (1013)
. ..+..+.-+.+..| +++|.-.+.|||...+++=.+.+ +...++.+. .....+.-...++..++.-+..
T Consensus 261 E------~aL~alt~~~mks~--nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~ 332 (858)
T COG5215 261 E------NALAALTGRFMKSQ--NDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEK 332 (858)
T ss_pred H------HHHHHHHHHHhcCc--chHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHh
Confidence 0 12233333445555 57999999999988776532111 100000010 0111122233344445444433
Q ss_pred -CCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHhhCchHHHHHHHhhhhcCCCCCCCchhhhHHHHHHHhhhhcccccC
Q 001789 397 -DESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEG 475 (1013)
Q Consensus 397 -p~~~~~~~~~~d~~d~f~~fR~~~~d~l~~~~~~l~~~~~l~~~~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~ 475 (1013)
.+|-+.|||.. . ...+-+|+--..+.|+ +++..++.-. ++.-.+.+|...|++..++|++-++-.++.
T Consensus 333 q~ed~~~DdWn~--------s-maA~sCLqlfaq~~gd-~i~~pVl~Fv-Eqni~~~~w~nreaavmAfGSvm~gp~~~~ 401 (858)
T COG5215 333 QGEDYYGDDWNP--------S-MAASSCLQLFAQLKGD-KIMRPVLGFV-EQNIRSESWANREAAVMAFGSVMHGPCEDC 401 (858)
T ss_pred cCCCccccccch--------h-hhHHHHHHHHHHHhhh-HhHHHHHHHH-HHhccCchhhhHHHHHHHhhhhhcCccHHH
Confidence 22222224422 1 1233444444444453 4555544332 112235789999999999999977654332
Q ss_pred CccchHHHHHHHHHh---ccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh--chh-chHHHHHHHHHhcCc-CchHHHHH
Q 001789 476 QAFDFSVIMQLVAVL---SASRSEELKGFMHIVYRSLADVIGSYSKWISA--FQT-NARPLLLFLAAGISE-AVSSNACA 548 (1013)
Q Consensus 476 ~~~~l~~i~~~l~~l---~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~--~p~-~L~~vl~~l~~~l~~-~~v~~~Aa 548 (1013)
- .+.+.+.++.+ -+++.. -+..+|+ +.+|+.++++.. +|+ +|+..+...+-|+.+ |.+...+|
T Consensus 402 l---T~~V~qalp~i~n~m~D~~l------~vk~ttA-wc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncs 471 (858)
T COG5215 402 L---TKIVPQALPGIENEMSDSCL------WVKSTTA-WCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSINCS 471 (858)
T ss_pred H---HhhHHhhhHHHHHhccccee------ehhhHHH-HHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhhhH
Confidence 2 12333444433 333321 1345565 999999999876 554 889999999988876 88888999
Q ss_pred HHHHHHHHHhhccc--CCCccHHHHHHHHHHHHh----cCCChhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Q 001789 549 SALRKICEDASALI--DEPSNLEILMWIGEALEK----RHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEA 622 (1013)
Q Consensus 549 ~a~~~lc~~c~~~l--~~~~~~~~l~~~~~~l~~----~~l~~~~~~~l~eai~~ii~~~p~~~~~~~~l~~ll~p~~~~ 622 (1013)
.++..+...-.+.. ......++...+...|.. ..-+...|...++++|.+|.--|+. ..+.+-.+.+.+..+
T Consensus 472 w~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~--V~~~~a~~~~~~~~k 549 (858)
T COG5215 472 WRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDA--VSDILAGFYDYTSKK 549 (858)
T ss_pred HHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchh--HHHHHHHHHHHHHHH
Confidence 99998886644322 111122333344433321 2224567889999999999887764 467778888888888
Q ss_pred HHhhhcccCCCCCCCCchhhHHHHHHHHHHHHhhhcccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHH
Q 001789 623 IGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNL 702 (1013)
Q Consensus 623 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v 702 (1013)
+.+.++-....-..++... .+-|++ ..+.-|.+|+|.-.++. +++ -.+++.++-++++. - +...+
T Consensus 550 l~~~isv~~q~l~~eD~~~-~~elqS--N~~~vl~aiir~~~~~i-------e~v---~D~lm~Lf~r~les-~-~~t~~ 614 (858)
T COG5215 550 LDECISVLGQILATEDQLL-VEELQS--NYIGVLEAIIRTRRRDI-------EDV---EDQLMELFIRILES-T-KPTTA 614 (858)
T ss_pred HHHHHHHhhhhhhhHHHHH-HHHHHH--HHHHHHHHHHHhcCCCc-------ccH---HHHHHHHHHHHHhc-c-CCchh
Confidence 8887765421000001100 011111 12333445555433222 222 23445556666653 2 22333
Q ss_pred HHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHhhhhcCCc--chHHHHhHHHHHHhcC
Q 001789 703 STAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNH--ECYIRTASVVIEEFGH 758 (1013)
Q Consensus 703 ~e~~c~~~k~~i~~~~~~~~~~l~~l~~~l~~~f~~~~~~--~~~L~l~s~li~~~g~ 758 (1013)
-+-+...+.....++++.|..+++.++.++......++.. ...+.+.+-+....|.
T Consensus 615 ~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~ 672 (858)
T COG5215 615 FGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGT 672 (858)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhh
Confidence 4566667777778888888888888888888766433221 1133444444444444
No 12
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=6.9e-12 Score=141.37 Aligned_cols=704 Identities=13% Similarity=0.117 Sum_probs=356.1
Q ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchHHHHHHHHHHHHHhcCCCC----
Q 001789 5 LQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYY---- 80 (1013)
Q Consensus 5 ~~~~v~~av~~ly~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaa~tL~~kI~~~w~~---- 80 (1013)
..+++-+.+..-. .|||+.|+-|++.|++.+..+.-=-....|+..+. .+.++|.-||..+++.|+++|..
T Consensus 3 ~le~l~~~l~qTl-~pdps~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~----~d~~~r~aaav~fKN~iKr~W~~~~~~ 77 (960)
T KOG1992|consen 3 NLETLANYLLQTL-SPDPSVRKPAERALRSLEGQQNYPLLLLNLVANGQ----QDPQIRVAAAVYFKNYIKRNWIPAEDS 77 (960)
T ss_pred cHHHHHHHHHhcC-CCCCccCchHHHHHHHhccCCCchHHHHHHHhccC----cChhHHHHHHHHHHHHHHhccCcCCCC
Confidence 3456666666533 57899999999999999877433334455665543 36899999999999999999974
Q ss_pred ---CChHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHchh-c-ccCchHHHHHHHhhcccCCCcchHHHHHHHhh
Q 001789 81 ---LQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA-V-EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTV 155 (1013)
Q Consensus 81 ---l~~e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~-~-~W~~~i~~li~~l~~~~~~~~~~~~~L~iL~~ 155 (1013)
+.+++++.+|.-++.... +.+..|..+|+.+++.++.+. | .||+.++++++.++++ +-......|..
T Consensus 78 ~~~i~~~~~e~ikslIv~lMl---~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~--D~~~~~gVL~t--- 149 (960)
T KOG1992|consen 78 PIKIIEEDREQIKSLIVTLML---SSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSG--DFNVINGVLVT--- 149 (960)
T ss_pred ccccchhHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhcccc--chHHHHHHHHH---
Confidence 456788888888887665 356779999999999999774 5 6999999999999864 22222333322
Q ss_pred chhccccccccc-cCCChHHHHHHHHHHHhhhhHHHHHHHHhhhhccCCCCCcchhhhHHHHHHHHHHHHhcccccccCc
Q 001789 156 LPEEVIDSQASD-CNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQ 234 (1013)
Q Consensus 156 l~EE~~~~~~~~-~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~L~cl~sWi~~~~~~~~~~ 234 (1013)
++-++ ++-+ .--+++--.+++..+-+......+++.+..+...... .+ .. .++.|.+.-
T Consensus 150 -ahsiF--kr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~---~~----~~---~l~~lf~vl------- 209 (960)
T KOG1992|consen 150 -AHSIF--KRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHA---ND----AA---ALNILFGVL------- 209 (960)
T ss_pred -HHHHH--HhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcc---cc----hh---HHHHHHHHH-------
Confidence 22222 1111 0012233333444344344444455544333221100 01 11 444555521
Q ss_pred chhcccchHHHHHHhccC---CCcHHHHHHHHHHHhhcCCChhHHHHhhhhhhHHhhhcccccCCcHH------HHhHHH
Q 001789 235 GSLAAHPLLNFVFNSLQV---QSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEK------VIGGLA 305 (1013)
Q Consensus 235 ~~~~~~~ll~~l~~~L~~---~~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~~------~~~~l~ 305 (1013)
-++.-+|..|.- |+.||.=++... +..+.+. .+.++.+.+++++ .-..+|
T Consensus 210 ------ll~~klfysLn~QDiPEFFEdnm~~wM--------------~~F~k~l-~~~~p~le~~~ee~~~l~~lka~IC 268 (960)
T KOG1992|consen 210 ------LLICKLFYSLNFQDIPEFFEDNMKTWM--------------GAFHKLL-TYDNPLLESDEEEATVLDKLKAQIC 268 (960)
T ss_pred ------HHHHHHHHhhhcccchHHHHhhHHHHH--------------HHHHHHH-hccCcccccCcccccHHHHHHHHHH
Confidence 144455655543 344433221111 1111110 0111223222211 112344
Q ss_pred HHHHHHHHhhhHHHHhcChhH-HHHHHHHHhcccCCCCCchhhhhcHHHHHHHHHHHhccchhhhhhhhhhhhhhHHHH-
Q 001789 306 CLMSEIGQAAPSLIVEASPEA-LALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVF- 383 (1013)
Q Consensus 306 ~l~~~~~e~~~~~l~~~~~~~-~~ll~~ll~~~~~p~~d~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~- 383 (1013)
.+|+-..+.|-.-+..--+++ .....+|...+..+.+|+ .+.-++.|.....+ ++.|..+|
T Consensus 269 Ei~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~-Lvs~Al~FLt~V~~----------------r~~y~~~F~ 331 (960)
T KOG1992|consen 269 EIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDY-LVSKALQFLTSVSR----------------RPHYAELFE 331 (960)
T ss_pred HHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHH-HHHHHHHHHHHHHh----------------hhhhHhhhc
Confidence 444433333322111101122 234566666666664332 33456777544332 23445444
Q ss_pred -HHHHHHHHHhcccCCCCCCCCCCCC-CcchHHH-------------HHHHHHHHHHHHHHhhCch--HHHHHHHhhhhc
Q 001789 384 -SALLDALLLRAQVDESSFNDDGMVD-LPDGLVQ-------------FRMNLVELLVDICQLLRSA--TFIQKVFFGSWG 446 (1013)
Q Consensus 384 -~~L~~~li~k~~~p~~~~~~~~~~d-~~d~f~~-------------fR~~~~d~l~~~~~~l~~~--~~l~~~~~~l~~ 446 (1013)
.+++..+.++...|.-..-. .|.| -+|+-.+ -|+...|+++..+...... .++..-.+.+..
T Consensus 332 ~~~vl~~i~e~VvlpN~~lR~-eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~ 410 (960)
T KOG1992|consen 332 GENVLAQICEKVVLPNLILRE-EDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLD 410 (960)
T ss_pred chHHHHHHHHhhcccccccch-hhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 46677777787777432210 0000 0111222 2445557777666544221 122222222221
Q ss_pred --CCCCCCCchhhhHHHHHHHhhhhc-------ccccCCccchHHHH--HHHHHhccCchhhhhhHHHHHHHHHHHHHHh
Q 001789 447 --SANVPIPWKEVETKLFALNVVSEV-------VLQEGQAFDFSVIM--QLVAVLSASRSEELKGFMHIVYRSLADVIGS 515 (1013)
Q Consensus 447 --~~~~~~~W~~~Ea~L~~l~~iae~-------~~~~~~~~~l~~i~--~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ 515 (1013)
..+++.+|...+.++|.+.+++-. +....+-.++...+ +++..|.+ | +...++-+.+.++ +
T Consensus 411 ~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s-~--~vn~~pilka~aI-----K 482 (960)
T KOG1992|consen 411 QYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLS-P--NVNEFPILKADAI-----K 482 (960)
T ss_pred HhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhcc-C--ccccccchhhccc-----c
Confidence 234577899999999999998633 22211111122211 12333322 0 0111122333332 2
Q ss_pred hHHHHHh--chhchHHHHHHHHHhcCcCc--hHHHHHHHHHHHHHHhhc---ccCCCccH-HHHHHHHHHHH-hcCCC-h
Q 001789 516 YSKWISA--FQTNARPLLLFLAAGISEAV--SSNACASALRKICEDASA---LIDEPSNL-EILMWIGEALE-KRHLP-L 585 (1013)
Q Consensus 516 y~~wl~~--~p~~L~~vl~~l~~~l~~~~--v~~~Aa~a~~~lc~~c~~---~l~~~~~~-~~l~~~~~~l~-~~~l~-~ 585 (1013)
|.--|.+ .|++|...++-+..++..+. |-.-||.++-++-.-|.. .+..+..+ |++..+..++. ...++ .
T Consensus 483 y~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~ 562 (960)
T KOG1992|consen 483 YIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGK 562 (960)
T ss_pred eeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcc
Confidence 2222334 46789999999999998644 778899999888766665 33223222 22233333332 11222 2
Q ss_pred hhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHHHHHHHHHHhhhcccccccc
Q 001789 586 EDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPV 665 (1013)
Q Consensus 586 ~~~~~l~eai~~ii~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~ 665 (1013)
.+.+.++++|-++++..++.- . ....+++.++.+++.....+..+..-..| ..+.++.+++....
T Consensus 563 ~EneylmKaImRii~i~~~~i--~----p~~~~~l~~Lteiv~~v~KNPs~P~fnHY---------LFEsi~~li~~t~~ 627 (960)
T KOG1992|consen 563 AENEYLMKAIMRIISILQSAI--I----PHAPELLRQLTEIVEEVSKNPSNPQFNHY---------LFESIGLLIRKTCK 627 (960)
T ss_pred cccHHHHHHHHHHHHhCHHhh--h----hhhhHHHHHHHHHHHHHhcCCCCchhHHH---------HHHHHHHHHHHHhc
Confidence 577899999999999876532 2 33444455555555444322111111112 24445555554321
Q ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhch----hhhhhHHHHHHHHHHhhhhcCC
Q 001789 666 PLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQ----HFVTLLPQVLDCLSTNFVSFQN 741 (1013)
Q Consensus 666 ~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~k~~i~~~~~----~~~~~l~~l~~~l~~~f~~~~~ 741 (1013)
. .+..+...-..++|++..++.. .-.+++--+..++...+...+. .+.+++|+++.-- .+..+..
T Consensus 628 ~------~~~~vs~~e~aL~p~fq~Il~e---DI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~--lW~r~gN 696 (960)
T KOG1992|consen 628 A------NPSAVSSLEEALFPVFQTILSE---DIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPN--LWKRSGN 696 (960)
T ss_pred c------CchHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHH--HHhhcCC
Confidence 0 1122334457889999998863 2223344444555554554433 4455555554432 2444434
Q ss_pred cchHHHHhHHHHHHhcCCC----CcchhHHHHHHHHhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHHhhHHHHhcc
Q 001789 742 HECYIRTASVVIEEFGHKD----EYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAAS 817 (1013)
Q Consensus 742 ~~~~L~l~s~li~~~g~~~----~~~~~i~~l~~~l~~~t~l~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~l~~~~ 817 (1013)
.+..+.++..++.. |... +..+.+...|.. +..+ +-.=+..|.|+.+++.+.|...+.
T Consensus 697 ipalvrLl~aflk~-g~~~~~~~~~l~~iLGifqk---------LiaS------ka~Dh~GF~LLn~i~~~~~~~~~~-- 758 (960)
T KOG1992|consen 697 IPALVRLLQAFLKT-GSQIVEAADKLSGILGIFQK---------LIAS------KANDHHGFYLLNTIIESIPPNELA-- 758 (960)
T ss_pred cHHHHHHHHHHHhc-CchhhcccccchhHHHHHHH---------HhcC------cccchhHHHHHHHHHhcCCHhhhh--
Confidence 56666777776653 2211 112223332222 2211 112234678888888887665543
Q ss_pred hhchHHHHHHHHHHhc
Q 001789 818 GALLEVSFQKAAICCT 833 (1013)
Q Consensus 818 ~~~l~~il~~~l~~l~ 833 (1013)
+....++...+.=++
T Consensus 759 -py~k~i~~llf~Rlq 773 (960)
T KOG1992|consen 759 -PYMKQIFGLLFQRLQ 773 (960)
T ss_pred -HHHHHHHHHHHHHHh
Confidence 345555544443343
No 13
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=3e-10 Score=124.98 Aligned_cols=801 Identities=12% Similarity=0.131 Sum_probs=407.3
Q ss_pred chHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchHHHHHHHHHHHHHhcCCCCCC
Q 001789 3 MDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQ 82 (1013)
Q Consensus 3 ~~~~~~v~~av~~ly~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaa~tL~~kI~~~w~~l~ 82 (1013)
|+..++++..-..||.+.|+..|.+|++-|.+|-.||+.-+-|.-||...+. +..+..|+.+|-.-+ .+-..||
T Consensus 1 m~sLaqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~gs~-----pYs~mlAst~L~Klv-s~~t~lp 74 (1082)
T KOG1410|consen 1 MQSLAQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLERGSY-----PYSQMLASTCLMKLV-SRKTPLP 74 (1082)
T ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC-----chHHHHHHHHHHHHH-cCCCCCc
Confidence 3478899999999999999999999999999999999999999999987653 478888888886555 4556899
Q ss_pred hHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHchhc--------ccCchHHHHHHHhhcccCCCcchHHHHHHH
Q 001789 83 SAAKDALLNALLVAAKRFS-SGPPQLLTQICLALSALILRAV--------EHGKPIEKLFYSLQNLQSQDNGNMAVLEML 153 (1013)
Q Consensus 83 ~e~~~~lr~~Ll~~l~~~~-~~~~~v~~kL~~~La~l~~~~~--------~W~~~i~~li~~l~~~~~~~~~~~~~L~iL 153 (1013)
.+++..||+.+++++..-. .-+++|+.-||+.+|.+.+.-| ...++|.++...++.. +.+.+.+.+.+|
T Consensus 75 l~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~--~ve~~~igv~iL 152 (1082)
T KOG1410|consen 75 LEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMD--NVEHCIIGVQIL 152 (1082)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccC--chHHHHHHHHHH
Confidence 9999999999999998522 1246899999999999988754 1357778887777653 567888999999
Q ss_pred hhchhccccccccccCCChHHHHHHHHHHHh-hhhHHHHHHHHhhhhccCCCCCcc-----hhhhHHHHHHHHH-HHHhc
Q 001789 154 TVLPEEVIDSQASDCNISSAHRSQYGQELLS-HTPMVVEFLMQQSDKRFDGGVPVQ-----LHDRNRKILRCLL-SWVRA 226 (1013)
Q Consensus 154 ~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~-~~~~v~~~l~~~l~~~~~~~~~~~-----~~~l~~~~L~cl~-sWi~~ 226 (1013)
+.|..|+...... .+..+++++...++. ..-+|+.+-.+.+....+-++... ...+...+++|+. -+|.-
T Consensus 153 sqLvqemN~~~~~---~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGs 229 (1082)
T KOG1410|consen 153 SQLVQEMNQADGM---DPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGS 229 (1082)
T ss_pred HHHHHHhhCCCCC---CcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhcccccccc
Confidence 9999999754322 345566666666655 345565554444444321111000 1124455667765 23221
Q ss_pred cc--------ccccCcc---hhcccchHHHHHHhccC--CCcHHHHHHHHHHHhhcCC---------ChhHHHHhhhhhh
Q 001789 227 GC--------FTEISQG---SLAAHPLLNFVFNSLQV--QSSFDVAIEVLVELVGRHE---------GLPQALLCRVPFL 284 (1013)
Q Consensus 227 ~~--------~~~~~~~---~~~~~~ll~~l~~~L~~--~~~~~~a~~~l~eil~~~~---------~~~~~l~~~~~~l 284 (1013)
.. ...||.+ .+..+..+++.|+.... |++.+.|++|++.+.+..+ +|.+.++..+..
T Consensus 230 s~DEssed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~~Lv~Gvk~- 308 (1082)
T KOG1410|consen 230 STDESSEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQHLVEGVKR- 308 (1082)
T ss_pred ccccccccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-
Confidence 10 0022222 12345567888877763 6788999999998876432 244445544332
Q ss_pred HHhhhcccccCCcHHHHhHHHHHHHHHHHhh-hHHHHhcChhHHHHHHHHHhcc--cCCCCC--chhhhhcHHHHHHHHH
Q 001789 285 KELLLLPALTDGDEKVIGGLACLMSEIGQAA-PSLIVEASPEALALADALLSCV--AFPSED--WEIADSTLQFWSTLAS 359 (1013)
Q Consensus 285 ~~~~~~~~~~~~d~~~~~~l~~l~~~~~e~~-~~~l~~~~~~~~~ll~~ll~~~--~~p~~d--~~v~~~~l~FW~~l~~ 359 (1013)
.+.+ ...-.|.+..+.+||++.-+-.+| ..-++.-+ ..-..+.++..+| +....+ ..-....+.+|..+..
T Consensus 309 --il~n-p~~LsD~~nyHeFCRllaRlktNYQL~ELv~v~-~Y~e~irLiAeFTv~SLq~wefa~nSvyyLlt~WqRmva 384 (1082)
T KOG1410|consen 309 --ILEN-PQGLSDPANYHEFCRLLARLKTNYQLGELVKVE-CYPEVIRLIAEFTVTSLQHWEFAPNSVYYLLTLWQRMVA 384 (1082)
T ss_pred --HHhC-CcCCCCcchHHHHHHHHHHHHhhhhhHhhhccC-CcHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHh
Confidence 2221 112346677777888877665444 11111111 0111222222221 110000 1223466889998775
Q ss_pred HHhccchhhhhhhhhhhhhhHHHHHH-HHHHHHHhcc--cCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHhhCch--
Q 001789 360 YILGLDASIAKNKKHVEDMFFSVFSA-LLDALLLRAQ--VDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSA-- 434 (1013)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~~~~~~~~-L~~~li~k~~--~p~~~~~~~~~~d~~d~f~~fR~~~~d~l~~~~~~l~~~-- 434 (1013)
.+--.... .+...+.|.|-..+ .+..=+...+ .|++ . |. --|+-. .-.+.-|.+-.+|..-=..
T Consensus 385 SVPyvk~~----~phlLd~y~PeIt~afi~SRl~sV~~ivrd~-~--d~---PLdd~~-~~~q~le~l~~icRceYEkTc 453 (1082)
T KOG1410|consen 385 SVPYVKNT----EPHLLDTYCPEITKAFITSRLQSVEIIVRDG-L--DD---PLDDTG-AVQQQLEQLATICRCEYEKTC 453 (1082)
T ss_pred cCCcccCC----ChHHHhhhcHHHHHHHHHHHhhhhheecccC-C--CC---cchhhH-HHHHHHHHhhhhhhhhHhhHH
Confidence 44211111 12333444432211 1111112221 2322 1 11 112211 1112223333333220000
Q ss_pred HHHHHHHhh-------hhcC-CCCCCCchhhhHH----HHHHHhhhhc-cc---ccCC-ccc---hHHHHHHHH----Hh
Q 001789 435 TFIQKVFFG-------SWGS-ANVPIPWKEVETK----LFALNVVSEV-VL---QEGQ-AFD---FSVIMQLVA----VL 490 (1013)
Q Consensus 435 ~~l~~~~~~-------l~~~-~~~~~~W~~~Ea~----L~~l~~iae~-~~---~~~~-~~~---l~~i~~~l~----~l 490 (1013)
..+.+.|+. ++.. ..++.+..-.|+- .|.+|++..+ ++ .++. ..+ ...+++++. .+
T Consensus 454 ~llvq~fdq~aqsyqe~~~~~s~~~~d~ai~EgrL~Wlv~lvgtvV~gk~t~~Std~~d~mDgEL~arvlql~nlmdsr~ 533 (1082)
T KOG1410|consen 454 ALLVQLFDQNAQSYQELLQNGSANDADIAIQEGRLVWLVYLVGTVVGGKTTATSTDEHDAMDGELSARVLQLVNLMDSRL 533 (1082)
T ss_pred HHHHHHHhhhHHHHHHHhcccCCCchhHHHHhhhhhhhHHHhHHHhcceecccccchhhhhhhHHHHHHHHHHHhhhccc
Confidence 133344433 2211 1122223333432 4556654322 21 1111 000 123444443 22
Q ss_pred ccCchhhhh-hHH----HHHHHHH-------HHHHHhhHHHHH--hchhchHHHHHHHHHhcCc----CchHHHHHHHHH
Q 001789 491 SASRSEELK-GFM----HIVYRSL-------ADVIGSYSKWIS--AFQTNARPLLLFLAAGISE----AVSSNACASALR 552 (1013)
Q Consensus 491 ~~~~~~~~~-~~~----~v~~~t~-------~~~ig~y~~wl~--~~p~~L~~vl~~l~~~l~~----~~v~~~Aa~a~~ 552 (1013)
|.....+.. .+. ..|.+-+ ..+-.+.++-+. .|...|..++..++..+.- ..+-+..-.-|.
T Consensus 534 ~~~~n~rle~ail~f~eqFRk~YvgDQ~~rsSkvY~rl~e~Lgi~de~~~L~viv~KI~TNLK~w~~~e~vi~~tLslf~ 613 (1082)
T KOG1410|consen 534 PLKGNERLELAILHFLEQFRKAYVGDQIQRSSKVYARLSEVLGITDESDVLGVIVGKILTNLKYWGRNEPVISLTLSLFN 613 (1082)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcccccCCchHHHHHHHHHH
Confidence 322211100 000 0000000 112222233222 2345667777777766642 235555555555
Q ss_pred HHHHHhh--cccCCCccHHHHHHHHHHH---------HhcC-CChhhHHHHHHHHHHHHcc-CCcHHHHHHHHHHHHHHH
Q 001789 553 KICEDAS--ALIDEPSNLEILMWIGEAL---------EKRH-LPLEDEEEVVGAISLILGS-VSNKELKNNLLARLLSSS 619 (1013)
Q Consensus 553 ~lc~~c~--~~l~~~~~~~~l~~~~~~l---------~~~~-l~~~~~~~l~eai~~ii~~-~p~~~~~~~~l~~ll~p~ 619 (1013)
.+.-.-. +.+. -++...-+..+- .+.+ -+...|-.+|+++|.++-. ..+++ ..+++++.|+
T Consensus 614 dLs~GY~~~kkL~---kl~~VqfmlnNHT~ehF~FLg~~~~~~~~r~RTTFY~al~rLl~~d~sede---~~fe~fm~PL 687 (1082)
T KOG1410|consen 614 DLSLGYSAVKKLV---KLDAVQFMLNNHTSEHFPFLGINIDLQDMRCRTTFYTALTRLLMVDLSEDE---DMFERFMLPL 687 (1082)
T ss_pred HHhhhHHHHHHHh---cchhhhhHhcccchhhCcccccCccchhhhhHhHHHHHHHHHHhhcccccH---HHHHHHHHHH
Confidence 5543211 1111 111111111110 0111 1345788999999999865 33333 3478999999
Q ss_pred HHHHHhhhcccCCCCCCCCchhhHHHHHHHHHHHHhhhcccccccccCCCCCCCCchHHH----HHHHHHHHHHHHHHhh
Q 001789 620 YEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFA----LLRVFWPMLEKLFRSE 695 (1013)
Q Consensus 620 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~----~~~~i~~~l~~i~~~~ 695 (1013)
.+..+.++..-+++-.+ .++. -+.+-.|..=+|++. +..+ ....+.- ..-..+|++....+ +
T Consensus 688 t~~fe~v~~~~~nn~f~--ee~v-------K~~liGL~RDLRGiA--~A~~--tktsy~~LFdWmYP~~mpllq~~Ve-~ 753 (1082)
T KOG1410|consen 688 TDAFEGVLQVFQNNCFE--EEQV-------KRILIGLCRDLRGIA--FASN--TKTSYQMLFDWMYPEYMPLLQRAVE-K 753 (1082)
T ss_pred HHHHHHHHHHhcccccc--HHHH-------HHHHHHHHHHhhhhh--hhhc--cchHHHHHHHHhhhhHHHHHHHHHH-h
Confidence 99998777665432222 1111 122222222222221 1111 1111222 22466778887777 5
Q ss_pred hccchHHHHHHHHHHHHHHHHh----chh------------hhhhHHHHHHHHHH--------hhh-hcCC-cchHHHHh
Q 001789 696 HMENGNLSTAACRALSLAIQSS----GQH------------FVTLLPQVLDCLST--------NFV-SFQN-HECYIRTA 749 (1013)
Q Consensus 696 ~~~~~~v~e~~c~~~k~~i~~~----~~~------------~~~~l~~l~~~l~~--------~f~-~~~~-~~~~L~l~ 749 (1013)
|.+.++++.-+.+++...+..= .-+ ...++..-=+.+++ -|. +... ..||.-+-
T Consensus 754 W~~~p~vtTPiLklmaE~v~NrsQRL~Fd~SSpngiLLFrEtSKmv~~YG~riL~Lp~vskdqiY~~kyKgI~v~~siLk 833 (1082)
T KOG1410|consen 754 WYGCPDVTTPILKLMAELVQNRSQRLKFDVSSPNGILLFRETSKMVSIYGNRILQLPEVSKDQIYAEKYKGISVCFSILK 833 (1082)
T ss_pred cCCCCccccHHHHHHHHHHhhhHhheecccCCCceeEEehhhhHHHHHHhhHhhcccCcchhhhHHHHhcCceehHHHHH
Confidence 9999988877777666554321 000 00111110011110 010 0001 12232233
Q ss_pred HHHHHHh---cCCCCcc-hhHHHHHHHHhhHHHHHHhhcC--CCCCCCCchHHHHHHHHHHHHHHhhHHHHhcchhchHH
Q 001789 750 SVVIEEF---GHKDEYG-PLFVTTFERFSQAASVRALNSS--YICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEV 823 (1013)
Q Consensus 750 s~li~~~---g~~~~~~-~~i~~l~~~l~~~t~l~~l~~~--~~~~~~pD~~~~~f~l~~~~l~~~p~~l~~~~~~~l~~ 823 (1013)
..+...| |--.-|. ..+.+.+..+ +.++.+. .++-+|+-+.++||+|+..+.+.+-..+....++.+-.
T Consensus 834 ~AL~GnYv~FGVFrLYGD~~l~daL~~f-----vKm~lsIp~sD~l~Y~Klsqsyy~llE~l~qdhm~Fi~nL~~~vfm~ 908 (1082)
T KOG1410|consen 834 NALSGNYVNFGVFRLYGDSALDDALQTF-----VKMLLSIPHSDLLSYRKLSQSYYNLLEVLTQDHMPFITNLEPDVFMY 908 (1082)
T ss_pred HHhhcCccccceeeeeCchHHHHHHHHH-----HHHHhcCCHHHHHhHHHHHHHHhhHHHHHHhccchhhhcCcHHHHHH
Confidence 3333222 1100011 1233333222 3333331 35668999999999999999988766666655577777
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHHHhhhh
Q 001789 824 SFQKAAICCTAMHRGAALAAMSYLSCFLEECL 855 (1013)
Q Consensus 824 il~~~l~~l~~~e~~~~~a~~~fl~~li~~~~ 855 (1013)
++..+-.+++.-+.-+..++|.-+..+++.-.
T Consensus 909 ll~Si~sGLt~lDt~v~ssccsslD~i~tYlf 940 (1082)
T KOG1410|consen 909 LLRSISSGLTSLDTIVSSSCCSSLDTIVTYLF 940 (1082)
T ss_pred HHHHHHhccchhhHHHHhHHHHHHHHHHHHHH
Confidence 77777778887788888888877777766543
No 14
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=99.66 E-value=7.1e-16 Score=150.41 Aligned_cols=146 Identities=27% Similarity=0.396 Sum_probs=126.6
Q ss_pred CHHHHHHHHHHHHHHHchhc--ccCchHHHHHHHhhcccCCCcchHHHHHHHhhchhccccccccccCCChHHHHHHHHH
Q 001789 104 PPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQE 181 (1013)
Q Consensus 104 ~~~v~~kL~~~La~l~~~~~--~W~~~i~~li~~l~~~~~~~~~~~~~L~iL~~l~EE~~~~~~~~~~l~~~~r~~~~~~ 181 (1013)
|++|++|+|.+++.++++.+ .||++++++++.+++ ++....+.|++|+.++||+.+..+.. ++..+|.++.+.
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~---~~~~~~~~L~iL~~l~eEi~~~~~~~--~~~~r~~~l~~~ 75 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS---SPQHLELVLRILRILPEEITDFRRSS--LSQERRRELKDA 75 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHTSHCCH--SHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc---chhHHHHHHHHHHHHHHHHHhhhchh--hhHHHHHHHHHH
Confidence 68899999999999999985 799999999999887 46678899999999999998643333 678899999999
Q ss_pred HHhhhhHHHHHHHHhhhhccCCCCCcchhhhHHHHHHHHHHHHhcccccccCcchhcccchHHHHHHhccCCCcHHHHHH
Q 001789 182 LLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIE 261 (1013)
Q Consensus 182 l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~L~cl~sWi~~~~~~~~~~~~~~~~~ll~~l~~~L~~~~~~~~a~~ 261 (1013)
+....+.|++++.++++...+. ....+...+|+|+.+|+. |++.+.+.++++++.+|+.|+++++++.|+|
T Consensus 76 l~~~~~~i~~~l~~~l~~~~~~----~~~~~~~~~L~~l~s~i~-----~~~~~~i~~~~~l~~~~~~l~~~~~~~~A~~ 146 (148)
T PF08389_consen 76 LRSNSPDILEILSQILSQSSSE----ANEELVKAALKCLKSWIS-----WIPIELIINSNLLNLIFQLLQSPELREAAAE 146 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHC----CHHHHHHHHHHHHHHHTT-----TS-HHHHHSSSHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccc----cHHHHHHHHHHHHHHHHH-----hCCHHHhccHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999875421 125788999999999999 7889988888999999999999999999999
Q ss_pred HH
Q 001789 262 VL 263 (1013)
Q Consensus 262 ~l 263 (1013)
||
T Consensus 147 cl 148 (148)
T PF08389_consen 147 CL 148 (148)
T ss_dssp HH
T ss_pred hC
Confidence 97
No 15
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=3e-09 Score=118.97 Aligned_cols=623 Identities=12% Similarity=0.042 Sum_probs=304.3
Q ss_pred CCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchHHHHHHHHHHHHHhcCCCCC-----ChHHHHHHHHHH
Q 001789 19 DTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYL-----QSAAKDALLNAL 93 (1013)
Q Consensus 19 ~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaa~tL~~kI~~~w~~l-----~~e~~~~lr~~L 93 (1013)
+.|+..|..|+.-|.+++|.|.--..|..++..+. .+.++|.-||.-+++||.+.|+.. +.+.+...|..+
T Consensus 14 dada~~rt~AE~~Lk~leKqPgFv~all~i~s~de----~~lnvklsAaIYfKNkI~rsWss~~d~~i~~Dek~e~K~~l 89 (970)
T COG5656 14 DADAGKRTIAEAMLKDLEKQPGFVMALLHICSKDE----GDLNVKLSAAIYFKNKIIRSWSSKRDDGIKADEKSEAKKYL 89 (970)
T ss_pred ccCcchhhHHHHHHHHhhcCCcHHHHHHHHHhhcc----CCchhhHHHHHHHhhhhhhhhhhcccCCCCCcccHHHHHHH
Confidence 56888999999999999999999999999998764 358999999999999999999973 345566666666
Q ss_pred HHHHHHh-cCCCHHHHHHHHHHHHHHHchhc---ccCchHHHHHHHhhcccCCCcchHHHHHHHhhchhccccccccccC
Q 001789 94 LVAAKRF-SSGPPQLLTQICLALSALILRAV---EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCN 169 (1013)
Q Consensus 94 l~~l~~~-~~~~~~v~~kL~~~La~l~~~~~---~W~~~i~~li~~l~~~~~~~~~~~~~L~iL~~l~EE~~~~~~~~~~ 169 (1013)
++.+... -.+|...|+.+..++..++-..+ -|+ ..+...+.+.++ +...+...|..+ +|+.+.-+ .+
T Consensus 90 ienil~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~--ea~~vy~gLlcl----~elfkayR--wk 160 (970)
T COG5656 90 IENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSS--EANHVYTGLLCL----EELFKAYR--WK 160 (970)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhccc--chhHHHHHHHHH----HHHHHHHh--hh
Confidence 6655442 25676777778777766654432 277 666666666653 233444445444 34443222 22
Q ss_pred CChHHHHHHHHHHHhhhhHHHHHHHHhhhhccCCCCCcchhhhHHHHHHHHHHHHhcccccccCcchhcccchHHHHHHh
Q 001789 170 ISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNS 249 (1013)
Q Consensus 170 l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~L~cl~sWi~~~~~~~~~~~~~~~~~ll~~l~~~ 249 (1013)
... +|.-+..-..+-+|.+.++=..+... ++. ...++...+|+.+.+-+-+ ++|......
T Consensus 161 ~nd-eq~di~~li~alfpile~~g~nl~s~-~ny----~s~e~l~LILk~fKsvcy~----~LP~~lsa~---------- 220 (970)
T COG5656 161 YND-EQVDILMLITALFPILEKVGGNLESQ-GNY----GSVETLMLILKSFKSVCYY----SLPDFLSAI---------- 220 (970)
T ss_pred ccc-hHhhHHHHHHHhhHHHHHHhhccccC-Cch----hHHHHHHHHHHHHHHHHHh----hCCHHHccc----------
Confidence 332 22222222333455555544333331 222 1346777888988887776 445443222
Q ss_pred ccCCCcHHHHHHHHHHHhhcCC---------------C---hhHHHHhhhhhhHHhhhcccccCCcHHHHhHHHHHHHHH
Q 001789 250 LQVQSSFDVAIEVLVELVGRHE---------------G---LPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEI 311 (1013)
Q Consensus 250 L~~~~~~~~a~~~l~eil~~~~---------------~---~~~~l~~~~~~l~~~~~~~~~~~~d~~~~~~l~~l~~~~ 311 (1013)
+.+-..+.....++.+.- . ..+.-+-.+..+.++|..+........+...++..+..+
T Consensus 221 ----e~f~sw~ql~l~i~qkplp~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~i 296 (970)
T COG5656 221 ----ETFSSWFQLSLRILQKPLPNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMI 296 (970)
T ss_pred ----hhhHHHHHHHHHHHcCCCCHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 222222333333333220 0 111111111111112211010111111222222222222
Q ss_pred HHhhhHHHHhcChhHHHHHHHHHhcccCCCCCchhhhhcHHHHHHHHHHHhccchhhhhhhhhhhhhhHHHHHHHHHHHH
Q 001789 312 GQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALL 391 (1013)
Q Consensus 312 ~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~li 391 (1013)
.+.+.+.+.. -+. | ..=.+..++-|--.|.+.... ..+.+...+|++.=++...+
T Consensus 297 l~tffkqie~--------------wgq--g-qLWlsd~~LYfi~~Fve~cv~--------~d~tw~l~ePhlq~ii~~vI 351 (970)
T COG5656 297 LATFFKQIEE--------------WGQ--G-QLWLSDIELYFIDFFVELCVD--------ADQTWRLMEPHLQYIISGVI 351 (970)
T ss_pred HHHHHHHHHH--------------hhc--C-CeecchHHHHHHHHHHHHHhh--------hHhhHhhhccHHHHHHHhhh
Confidence 2233222221 111 1 112344455554445443321 12456778888865554443
Q ss_pred HhcccCCCCCCCCCCCCCcchHH-HH--------HHHHH--HHHHHHHHhhCchHHHHHH----HhhhhcC---CCCCCC
Q 001789 392 LRAQVDESSFNDDGMVDLPDGLV-QF--------RMNLV--ELLVDICQLLRSATFIQKV----FFGSWGS---ANVPIP 453 (1013)
Q Consensus 392 ~k~~~p~~~~~~~~~~d~~d~f~-~f--------R~~~~--d~l~~~~~~l~~~~~l~~~----~~~l~~~---~~~~~~ 453 (1013)
--+-.+.++..+.|+. +.++|- +| |-|++ +++.-+ ..=+++..+.-+ .+.+... +.+-.+
T Consensus 352 fPllc~see~eElfEn-Dp~eyirry~df~d~g~spdlaal~fl~~~-~sKrke~TfqgiLsf~~sil~qsaa~psn~dn 429 (970)
T COG5656 352 FPLLCLSEEEEELFEN-DPDEYIRRYYDFFDNGLSPDLAALFFLIIS-KSKRKEETFQGILSFLLSILGQSAATPSNIDN 429 (970)
T ss_pred hhhcCCChhhHHHHhc-CHHHHHHHhcchhcCCCChhHHHHHHHHHH-hcccchhhhhhHHHHHHHHHhcccCCCCcccc
Confidence 3322222211112321 122221 11 11222 112111 111223323222 2222111 111245
Q ss_pred chhhhHHHHHHHhhhhcccccCCccchHHHHHHH-HH--hccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhchhchHHH
Q 001789 454 WKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLV-AV--LSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPL 530 (1013)
Q Consensus 454 W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l-~~--l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~~L~~v 530 (1013)
-+..|.|++.+.+|..-+++ ++ .+..+++.+ .. +|.... ..+| ++.++ |+++++|+.=++. +..+..+
T Consensus 430 arq~egalr~lasi~s~itk-~s--p~an~me~fiv~hv~P~f~s--~ygf--L~Sra-ce~is~~eeDfkd-~~ill~a 500 (970)
T COG5656 430 ARQAEGALRLLASIKSFITK-MS--PAANVMEYFIVNHVIPAFRS--NYGF--LKSRA-CEFISTIEEDFKD-NGILLEA 500 (970)
T ss_pred HHHHhhHHHHHHHHHHHhcc-Cc--hHHHHHHHHHHHHhhHhhcC--cccc--hHHHH-HHHHHHHHHhccc-chHHHHH
Confidence 78899999999999885543 32 235555532 22 233221 1222 45555 6999999765543 4556667
Q ss_pred HHHHHHhcCcCc--hHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHH----HHHHccCCc
Q 001789 531 LLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAI----SLILGSVSN 604 (1013)
Q Consensus 531 l~~l~~~l~~~~--v~~~Aa~a~~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai----~~ii~~~p~ 604 (1013)
.+....+|.+.. |+-.||.|++-+..+-..+.....+.|..++-.-.+. ...+.+....++|++ +.=++...
T Consensus 501 ye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLS-n~feiD~LS~vMe~fVe~fseELspfa- 578 (970)
T COG5656 501 YENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLS-NTFEIDPLSMVMESFVEYFSEELSPFA- 578 (970)
T ss_pred HHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhc-ccccchHHHHHHHHHHHHhHHhhchhH-
Confidence 777777777633 8889999999888654433322234444433322222 223444445555443 22222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHHHHHHHHHHhhhcccccccccCCCCCCCCchHHHHHHHH
Q 001789 605 KELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVF 684 (1013)
Q Consensus 605 ~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i 684 (1013)
++...++.+-.+.-.+..+...++ .....++. ++ .+...+..+.+++-+++.. +.......+..
T Consensus 579 ----~eLa~~Lv~qFlkiaq~l~ens~d--~~s~vDDK--qm-aasGiL~T~~smiLSlen~-------p~vLk~le~sl 642 (970)
T COG5656 579 ----PELAGSLVRQFLKIAQSLLENSSD--TSSVVDDK--QM-AASGILRTIESMILSLENR-------PLVLKYLEVSL 642 (970)
T ss_pred ----HHHHHHHHHHHHHHHHHHHcCCcc--ccccccHH--HH-HHHHHHHHHHHHHHhcccc-------hHHHHHHHHHH
Confidence 122222222222222233333221 11111111 11 3455566666665555431 12233344677
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHhh
Q 001789 685 WPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNF 736 (1013)
Q Consensus 685 ~~~l~~i~~~~~~~~~~v~e~~c~~~k~~i~~~~~~~~~~l~~l~~~l~~~f 736 (1013)
.|++.-++.. .-.++...+|.++.... -....+.|..+++.+.+...-
T Consensus 643 ypvi~Filkn---~i~dfy~Ea~dildg~t-f~skeI~pimwgi~Ell~~~l 690 (970)
T COG5656 643 YPVISFILKN---EISDFYQEALDILDGYT-FMSKEIEPIMWGIFELLLNLL 690 (970)
T ss_pred HHHHHHHHhh---hHHHHHHHHHHHHhhhh-HHHHHhhhhhhHHHHHHHhcc
Confidence 8888888753 33456666777665432 223345577888888877643
No 16
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.50 E-value=2.4e-08 Score=114.69 Aligned_cols=144 Identities=15% Similarity=0.136 Sum_probs=107.4
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchHHHHHHHHHHHHHhcCCCCC------
Q 001789 8 KVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYL------ 81 (1013)
Q Consensus 8 ~v~~av~~ly~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaa~tL~~kI~~~w~~l------ 81 (1013)
.+.+.+.... ++|+..|.+|+..|.++..+++--.....+..+.. .+.+.|.+|+..|+.-|.++|...
T Consensus 5 ~ii~~L~~~l-s~d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~----~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~ 79 (1005)
T KOG2274|consen 5 AIIELLSGSL-SADQNVRSQAETQLKQLELTEGFGVALAEVAANKD----ASLPLRQIALVLLKRYIEKHWSPNFEAFRY 79 (1005)
T ss_pred HHHHHHHhhc-CCChhHHHHHHHHHhccccchHHHHHHHHHHhCcc----cCchHHHHHHHHHHHHHHHhCCChHhhccC
Confidence 3444444443 67999999999999999998773333333333322 357899999999999999999854
Q ss_pred ----ChHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHch-hc-ccCchHHHHHHHhhcccCCCcchHHHHHHHhh
Q 001789 82 ----QSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILR-AV-EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTV 155 (1013)
Q Consensus 82 ----~~e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~-~~-~W~~~i~~li~~l~~~~~~~~~~~~~L~iL~~ 155 (1013)
+++.+.-||+.|++.+. ..++.+++-.+.+++.++-- +| .||+.++-+..+++++ +.+.....|++|..
T Consensus 80 ~~~~~e~~K~~IRe~Ll~~l~---~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~--n~n~i~~am~vL~e 154 (1005)
T KOG2274|consen 80 PLIVSEEVKALIREQLLNLLD---DSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSG--NENSIHGAMRVLAE 154 (1005)
T ss_pred CCcccHHHHHHHHHHHHhhhh---ccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhcc--chhhhhhHHHHHHH
Confidence 34567788888887776 56678888899899988754 44 6999998888888863 56677888888888
Q ss_pred chhccc
Q 001789 156 LPEEVI 161 (1013)
Q Consensus 156 l~EE~~ 161 (1013)
+..|+.
T Consensus 155 l~~ev~ 160 (1005)
T KOG2274|consen 155 LSDEVD 160 (1005)
T ss_pred HHHHHH
Confidence 887774
No 17
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=4.7e-05 Score=86.98 Aligned_cols=170 Identities=17% Similarity=0.139 Sum_probs=121.3
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchHHHHHHHHHHHHHhcCCC-----CCChH
Q 001789 10 AQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGY-----YLQSA 84 (1013)
Q Consensus 10 ~~av~~ly~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaa~tL~~kI~~~w~-----~l~~e 84 (1013)
.+.+++.. ++|+..++-|++.|.+..+.|.-......+.-+. +.+.++|..|+.-+|+-|.+.|. .+|+|
T Consensus 3 vq~Lq~At-s~d~~v~k~AE~qLr~WEtqPGF~~~L~sI~l~~----t~dv~vRWmAviyfKNgIdryWR~~~~~sl~~E 77 (978)
T KOG1993|consen 3 VQVLQQAT-SQDHIVVKPAEAQLRQWETQPGFFSKLYSIFLSK----TNDVSVRWMAVIYFKNGIDRYWRRNTKMSLPPE 77 (978)
T ss_pred HHHHHHhc-CCCcccchhHHHHHHhhccCCcHHHHHHHHHhcc----ccceeeeeehhhhHhcchhHHhhcCCcccCCHH
Confidence 34444433 6788899999999999999999888877776553 35699999999999999999887 68999
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHc-hhc-ccCchHHHHHHHhhcccCCC--cchHHHHHHHhhchhcc
Q 001789 85 AKDALLNALLVAAKRFSSGPPQLLTQICLALSALIL-RAV-EHGKPIEKLFYSLQNLQSQD--NGNMAVLEMLTVLPEEV 160 (1013)
Q Consensus 85 ~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~-~~~-~W~~~i~~li~~l~~~~~~~--~~~~~~L~iL~~l~EE~ 160 (1013)
++..||..++.++. +.++.+..|.++.++.+|- .+| .||+.+++++..+++..+.. .....+|..|--+-.++
T Consensus 78 EK~~iR~~Ll~~~~---E~~nQlaiQ~AvlisrIARlDyPreWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~L 154 (978)
T KOG1993|consen 78 EKDFIRCNLLLHSD---EENNQLAIQNAVLISRIARLDYPREWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKAL 154 (978)
T ss_pred HHHHHHHHHHHhcc---cchhHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence 99999999998875 4567788888999999984 456 79999999999998743222 12223333333333433
Q ss_pred ccccccccCCChHHHHHHHHHHHhhhhHHHHHHHHhh
Q 001789 161 IDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQS 197 (1013)
Q Consensus 161 ~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l 197 (1013)
...| +. +-++.+..-++.|++++..++
T Consensus 155 at~R-----L~-----a~rk~F~el~~~I~~~l~~~l 181 (978)
T KOG1993|consen 155 ATKR-----LL-----ADRKAFYELAPEILTILAPIL 181 (978)
T ss_pred HHhH-----Hh-----hhhHHHHHHhHHHHHHHHHHH
Confidence 3211 22 223345556677777554433
No 18
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=98.73 E-value=2.6e-08 Score=84.43 Aligned_cols=67 Identities=33% Similarity=0.375 Sum_probs=62.0
Q ss_pred HHHHHHHHhcC-hHHHHHHHHhhccCCCCCCccchHHHHHHHHHHHHHhcCCC--------CCChHHHHHHHHHHHHHHH
Q 001789 28 ANQWLVQFQQT-DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGY--------YLQSAAKDALLNALLVAAK 98 (1013)
Q Consensus 28 A~~~L~~fq~s-~~aW~~~~~LL~~~~~~~~~~~~~~ffaa~tL~~kI~~~w~--------~l~~e~~~~lr~~Ll~~l~ 98 (1013)
|+++|.+|+++ |+.|..+..++.+.+ .+.++|+||+.+|+++|+++|. .+|++++..||+.|++.+.
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~~~----~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSSNS----QDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHCTT----SCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHccC----CCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHc
Confidence 78999999999 999999999996643 4689999999999999999999 9999999999999999875
No 19
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=0.00056 Score=82.35 Aligned_cols=371 Identities=14% Similarity=0.146 Sum_probs=212.9
Q ss_pred HHHHHHHHHHHHHHHhhCch---HHHHHHHhhhhcCCCCCCCchhhhHHHHHHHhhhhcccccCCccchHHHHHHHHHhc
Q 001789 415 QFRMNLVELLVDICQLLRSA---TFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLS 491 (1013)
Q Consensus 415 ~fR~~~~d~l~~~~~~l~~~---~~l~~~~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~ 491 (1013)
.-|+.++|++-.+..-..++ ..+.-+++.. .+.+-+..|++++.++++.+.+...... .+..+..++.+--
T Consensus 95 ~vr~k~~dviAeia~~~l~e~WPell~~L~q~~-----~S~~~~~rE~al~il~s~~~~~~~~~~~-~~~~l~~lf~q~~ 168 (1075)
T KOG2171|consen 95 SVRHKLADVIAEIARNDLPEKWPELLQFLFQST-----KSPNPSLRESALLILSSLPETFGNTLQP-HLDDLLRLFSQTM 168 (1075)
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHHHHh-----cCCCcchhHHHHHHHHhhhhhhccccch-hHHHHHHHHHHhc
Confidence 57899999999888876654 2344333332 2445667799999999999999854432 2455666665544
Q ss_pred cCchhhhhhHHHHHHHHHHHHHHhhHHHHHhch-------hchHHHHHHHHHhcCcCc--hHHHHHHHHHHHHHHhhccc
Q 001789 492 ASRSEELKGFMHIVYRSLADVIGSYSKWISAFQ-------TNARPLLLFLAAGISEAV--SSNACASALRKICEDASALI 562 (1013)
Q Consensus 492 ~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p-------~~L~~vl~~l~~~l~~~~--v~~~Aa~a~~~lc~~c~~~l 562 (1013)
..+... ||.++ .+.+|.|..++..++ ..||.+++.+-..+.+-+ ....+-.+|..|...+.+.+
T Consensus 169 ~d~s~~------vr~~a-~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l 241 (1075)
T KOG2171|consen 169 TDPSSP------VRVAA-VRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLL 241 (1075)
T ss_pred cCCcch------HHHHH-HHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHH
Confidence 444322 45545 489999999886333 245556666655555432 45566677778888888877
Q ss_pred CCCccHHHHHHHHHHH-HhcCCChhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhhhcccCC-----CCCC
Q 001789 563 DEPSNLEILMWIGEAL-EKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNN-----HSLI 636 (1013)
Q Consensus 563 ~~~~~~~~l~~~~~~l-~~~~l~~~~~~~l~eai~~ii~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~-----~~~~ 636 (1013)
.+ ++..+.++.-.+ .+..+++..|...+|-+...+...|.- .+....+..+++..+-..+..... +...
T Consensus 242 ~~--~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~---~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~ 316 (1075)
T KOG2171|consen 242 RP--HLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAM---CKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDD 316 (1075)
T ss_pred HH--HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHH---hhhchhhhccHHHHHHHhcCCcccchhhccccc
Confidence 53 666666555444 468899999999999999998875542 222333555555544444332211 1000
Q ss_pred CCchhhHHHHHHHHHHHHhhhcccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 001789 637 HNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQS 716 (1013)
Q Consensus 637 ~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~k~~i~~ 716 (1013)
.+.++....=..+.+++++++.-+ .+. . ++-.+++.+.+.++. .+-.-..++...+..+..-
T Consensus 317 ~ded~~~~~~~~A~~~lDrlA~~L---~g~--------~----v~p~~~~~l~~~l~S---~~w~~R~AaL~Als~i~EG 378 (1075)
T KOG2171|consen 317 LDEDDEETPYRAAEQALDRLALHL---GGK--------Q----VLPPLFEALEAMLQS---TEWKERHAALLALSVIAEG 378 (1075)
T ss_pred cccccccCcHHHHHHHHHHHHhcC---Chh--------h----ehHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHcc
Confidence 011110001113567788887422 210 0 111223444444332 1222234566666666666
Q ss_pred hchhhhhhHHHHHHHHHHhhhhcCCcchHHHHhHHHHHHhcCCCCcchhHHHHHHHHhhHHHHHHhhcCCCCCCCCchHH
Q 001789 717 SGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVE 796 (1013)
Q Consensus 717 ~~~~~~~~l~~l~~~l~~~f~~~~~~~~~L~l~s~li~~~g~~~~~~~~i~~l~~~l~~~t~l~~l~~~~~~~~~pD~~~ 796 (1013)
+.+.+...+|++++.++..+. +||+-+=|.++-.+..+..+ +.|.+..-...... ..+...-+-..+|-+-.
T Consensus 379 c~~~m~~~l~~Il~~Vl~~l~--DphprVr~AA~naigQ~std--l~p~iqk~~~e~l~----~aL~~~ld~~~~~rV~a 450 (1075)
T KOG2171|consen 379 CSDVMIGNLPKILPIVLNGLN--DPHPRVRYAALNAIGQMSTD--LQPEIQKKHHERLP----PALIALLDSTQNVRVQA 450 (1075)
T ss_pred cHHHHHHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHhhhhh--hcHHHHHHHHHhcc----HHHHHHhcccCchHHHH
Confidence 777888899999999887664 48888888888888777653 34444442221111 11111111134444444
Q ss_pred HHHHHHHHHHHHhhHHHHhcchhchHHHHHHHHHHh
Q 001789 797 AYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICC 832 (1013)
Q Consensus 797 ~~f~l~~~~l~~~p~~l~~~~~~~l~~il~~~l~~l 832 (1013)
..-.-+-.+...|+...+. ++++.+++.-+.-+
T Consensus 451 hAa~al~nf~E~~~~~~l~---pYLd~lm~~~l~~L 483 (1075)
T KOG2171|consen 451 HAAAALVNFSEECDKSILE---PYLDGLMEKKLLLL 483 (1075)
T ss_pred HHHHHHHHHHHhCcHHHHH---HHHHHHHHHHHHHH
Confidence 4444444555677777664 57777777544444
No 20
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=97.82 E-value=0.15 Score=60.59 Aligned_cols=143 Identities=16% Similarity=0.084 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchHHHHHHHHHHHHHhcCCCC----
Q 001789 5 LQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYY---- 80 (1013)
Q Consensus 5 ~~~~v~~av~~ly~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaa~tL~~kI~~~w~~---- 80 (1013)
..+.|.++-.+ .++||..++.|++-|++..+.++ ++..|+.-... .+.+...|.-|+.-+++-|.++|.+
T Consensus 3 ~~~vv~~~~~a--qs~~p~s~k~AE~~Lrqwe~q~g---F~~kL~~I~~~-~~~~m~lR~~a~i~fkn~I~~~W~~~~~~ 76 (947)
T COG5657 3 DLPVVKQLDLA--QSPDPPSVKCAEERLRQWEKQHG---FALKLLSINLS-AFNSMSLRWAALIQFKNYIDKHWREENGN 76 (947)
T ss_pred chHHHHHHHhh--cCCCCchHhhHHHHHHhhhcccc---HHHHHHHHHhc-cccchhHHHHHHHHHHhhHHHHhhhhccc
Confidence 44444444333 26788889999999999999887 44444432211 1356899999999999999999985
Q ss_pred -CChHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHch-hc-ccCchHHHHHHHhhcccCCCcchHHHHHHHhhch
Q 001789 81 -LQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILR-AV-EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (1013)
Q Consensus 81 -l~~e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~-~~-~W~~~i~~li~~l~~~~~~~~~~~~~L~iL~~l~ 157 (1013)
+++++...+|..++..+.+. +....-|.+.+.+.+|-- +| .||..++|+++.++.. +-......|..+-.+-
T Consensus 77 ~i~p~e~v~IR~~l~~lii~s---~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~~--D~~tn~~~L~~~h~If 151 (947)
T COG5657 77 SILPDENVLIRDELFSLIISS---SNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSLLSEK--DMVTNENSLRVLHHIF 151 (947)
T ss_pred CCCCccchHHHHHHHHHHHcc---cchHHHHHHHHHHHHHhccCcccchhHHHHHHhhhccc--chHHHHHHHHHHHHHH
Confidence 44555569999999998753 333333888888888844 55 7999999999999863 2223344444444333
Q ss_pred h
Q 001789 158 E 158 (1013)
Q Consensus 158 E 158 (1013)
.
T Consensus 152 k 152 (947)
T COG5657 152 K 152 (947)
T ss_pred H
Confidence 3
No 21
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.14 E-value=0.7 Score=52.12 Aligned_cols=88 Identities=17% Similarity=0.189 Sum_probs=51.2
Q ss_pred hHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhchhchHHHHHHHHHhcCcCc--hHHHHHHHHHHH---
Q 001789 480 FSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAV--SSNACASALRKI--- 554 (1013)
Q Consensus 480 l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~~L~~vl~~l~~~l~~~~--v~~~Aa~a~~~l--- 554 (1013)
+|.+.++|..--+++... ...+..-.++|+.+..+.. ....+.+|+.|+=..++.+. -+.+|..||.++
T Consensus 323 lP~lL~LL~~q~ed~~~D-dWn~smaA~sCLqlfaq~~-----gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~g 396 (858)
T COG5215 323 LPELLSLLEKQGEDYYGD-DWNPSMAASSCLQLFAQLK-----GDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHG 396 (858)
T ss_pred HHHHHHHHHhcCCCcccc-ccchhhhHHHHHHHHHHHh-----hhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcC
Confidence 355666665543333211 1112233444444444322 23467789999999999876 578899999988
Q ss_pred -HHHhhcccCCCccHHHHHHH
Q 001789 555 -CEDASALIDEPSNLEILMWI 574 (1013)
Q Consensus 555 -c~~c~~~l~~~~~~~~l~~~ 574 (1013)
|++|...++ |+.+|.+...
T Consensus 397 p~~~~lT~~V-~qalp~i~n~ 416 (858)
T COG5215 397 PCEDCLTKIV-PQALPGIENE 416 (858)
T ss_pred ccHHHHHhhH-HhhhHHHHHh
Confidence 466666554 4555555443
No 22
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.95 Score=52.12 Aligned_cols=343 Identities=14% Similarity=0.122 Sum_probs=168.5
Q ss_pred HHHHHHhhhhcccccCC-ccchHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh-chh---chHHHHHHH
Q 001789 460 KLFALNVVSEVVLQEGQ-AFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA-FQT---NARPLLLFL 534 (1013)
Q Consensus 460 ~L~~l~~iae~~~~~~~-~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~-~p~---~L~~vl~~l 534 (1013)
+||-++..+..+..+.. ....|.+..++..+....+ + |.- + ..+.++.+-+. .++ ||..+|.-|
T Consensus 454 TCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK--~-----VQE-A---AcsAfAtleE~A~~eLVp~l~~IL~~l 522 (885)
T KOG2023|consen 454 TCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNK--K-----VQE-A---ACSAFATLEEEAGEELVPYLEYILDQL 522 (885)
T ss_pred eeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccH--H-----HHH-H---HHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 35566666655543322 1213444456666554432 1 222 2 22333444333 222 667777777
Q ss_pred HHhcCc---CchHHHHHHHHHHHHHHhhcccCCCccHHHHH----HHHHHHHhcCCChhhHHHHHHHHHHHHccCCc---
Q 001789 535 AAGISE---AVSSNACASALRKICEDASALIDEPSNLEILM----WIGEALEKRHLPLEDEEEVVGAISLILGSVSN--- 604 (1013)
Q Consensus 535 ~~~l~~---~~v~~~Aa~a~~~lc~~c~~~l~~~~~~~~l~----~~~~~l~~~~l~~~~~~~l~eai~~ii~~~p~--- 604 (1013)
..++.. ..+ .--.+|+..+++.|+.+|..|.++..|+ +-.+.+. -+.++.--++|.+++|.+++..
T Consensus 523 ~~af~kYQ~KNL-lILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~ls---d~DKdLfPLLEClSsia~AL~~gF~ 598 (885)
T KOG2023|consen 523 VFAFGKYQKKNL-LILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLS---DSDKDLFPLLECLSSIASALGVGFL 598 (885)
T ss_pred HHHHHHHhhcce-ehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcC---cccchHHHHHHHHHHHHHHHhcccc
Confidence 666652 222 2236789999999999987665554443 3333321 1345666778888888877533
Q ss_pred --HHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCch-hhHHHHHHHHHHHHhhhcccccccccCCCCCCCCchHHHHH
Q 001789 605 --KELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPA-TYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALL 681 (1013)
Q Consensus 605 --~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~ 681 (1013)
.... ..+.+.-+-..++.......+... ..|+ ++ .+-.++-++.+.+++.... +|.+ .-
T Consensus 599 P~~~~V---y~Rc~~il~~t~q~~~~~~~~~~~-~~pdkdf------iI~sLDL~SGLaegLg~~i-------e~Lv-a~ 660 (885)
T KOG2023|consen 599 PYAQPV---YQRCFRILQKTLQLLAKVQQDPTV-EAPDKDF------IIVSLDLLSGLAEGLGSHI-------EPLV-AQ 660 (885)
T ss_pred ccCHHH---HHHHHHHHHHHHHHHHhccCCccc-cCCCcce------EEEeHHHHhHHHHHhhhch-------HHHh-hh
Confidence 2211 222222222222222222211111 1111 11 1122343444444443211 2211 11
Q ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHhhhhcCCcch---HHHHhHHHHHHhcC
Q 001789 682 RVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHEC---YIRTASVVIEEFGH 758 (1013)
Q Consensus 682 ~~i~~~l~~i~~~~~~~~~~v~e~~c~~~k~~i~~~~~~~~~~l~~l~~~l~~~f~~~~~~~~---~L~l~s~li~~~g~ 758 (1013)
..+..++...+.. .-++|.+.+..++....+.+-+++.|.+..++..+...+... ..|. ..|.++-+..++|.
T Consensus 661 snl~~lll~C~~D---~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~-~isv~nNA~WAiGeia~k~g~ 736 (885)
T KOG2023|consen 661 SNLLDLLLQCLQD---EVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPE-NISVCNNAIWAIGEIALKMGL 736 (885)
T ss_pred ccHHHHHHHHhcc---CChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChh-hchHHHHHHHHHHHHHHHhch
Confidence 2344444444332 456888888888887777765555555555555444433321 1222 35667777777776
Q ss_pred CCCcchhHHHHHHHHhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHHhhHHHHhcchhchHHHHHHHHHHhc-cCCh
Q 001789 759 KDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCT-AMHR 837 (1013)
Q Consensus 759 ~~~~~~~i~~l~~~l~~~t~l~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~l~~~~~~~l~~il~~~l~~l~-~~e~ 837 (1013)
. ..+.+..++..+.. .++. ....-.+.++.=--++|+-..||..+.+ .++.++.-....+. ..+.
T Consensus 737 ~--~~~~v~~vl~~L~~-----iin~---~~~~~tllENtAITIGrLg~~~Pe~vAp----~l~~f~~pWc~sl~~i~Dn 802 (885)
T KOG2023|consen 737 K--MKQYVSPVLEDLIT-----IINR---QNTPKTLLENTAITIGRLGYICPEEVAP----HLDSFMRPWCTSLRNIDDN 802 (885)
T ss_pred h--hhhHHHHHHHHHHH-----Hhcc---cCchHHHHHhhhhhhhhhhccCHHhcch----hHHHHHHHHHHHhcccccc
Confidence 4 22344443332211 1221 1223345666555677888889998764 35554443333443 4456
Q ss_pred hHHHHHHHHHHHHHhh
Q 001789 838 GAALAAMSYLSCFLEE 853 (1013)
Q Consensus 838 ~~~~a~~~fl~~li~~ 853 (1013)
+-..+|+.=+.++|..
T Consensus 803 eEK~sAFrG~c~mi~v 818 (885)
T KOG2023|consen 803 EEKESAFRGLCNMINV 818 (885)
T ss_pred hhHHHHHHHHHHheee
Confidence 6667777766666654
No 23
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=1.9 Score=54.61 Aligned_cols=174 Identities=13% Similarity=0.119 Sum_probs=97.6
Q ss_pred hhhhhhHHHHHHHHHHHHHhcccCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHhhCc------hHHHHHHHhhhhcC
Q 001789 374 HVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRS------ATFIQKVFFGSWGS 447 (1013)
Q Consensus 374 ~~~~~~~~~~~~L~~~li~k~~~p~~~~~~~~~~d~~d~f~~fR~~~~d~l~~~~~~l~~------~~~l~~~~~~l~~~ 447 (1013)
+..+...|++.+|+..+. |.+|+++ ..+.+.+.+++..+-. +.++..+++.++.+
T Consensus 987 ~a~~kl~p~l~kLIPrLy-RY~yDP~------------------~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~ 1047 (1702)
T KOG0915|consen 987 QAGEKLEPYLKKLIPRLY-RYQYDPD------------------KKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVN 1047 (1702)
T ss_pred HHHHhhhhHHHHhhHHHh-hhccCCc------------------HHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHh
Confidence 346677888888887774 3556544 2345666666665432 24677777776542
Q ss_pred CCCCCCchhhhHHHHHHHhhhhcccccCCccchHHHHHHHHHhccCc--hhhhhhHHHHHHHHHHHHHHhhHHHH--Hhc
Q 001789 448 ANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASR--SEELKGFMHIVYRSLADVIGSYSKWI--SAF 523 (1013)
Q Consensus 448 ~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~--~~~~~~~~~v~~~t~~~~ig~y~~wl--~~~ 523 (1013)
..+..|+-.||+|.|+.-+-.+=+.++-...+|.++..+-+.-++- ..|..+. -..+++..++.+.++=. ...
T Consensus 1048 -lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~--~~~~~lsKl~vr~~d~~~~~~~ 1124 (1702)
T KOG0915|consen 1048 -LTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAAD--KAARALSKLCVRICDVTNGAKG 1124 (1702)
T ss_pred -ccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhcccCCcccH
Confidence 1356799999999999876544222111111444444333322221 2222111 11112222333322210 112
Q ss_pred hhchHHHHHHHH-HhcCc--CchHHHHHHHHHHHHHHhhcccCCCccHHHH
Q 001789 524 QTNARPLLLFLA-AGISE--AVSSNACASALRKICEDASALIDEPSNLEIL 571 (1013)
Q Consensus 524 p~~L~~vl~~l~-~~l~~--~~v~~~Aa~a~~~lc~~c~~~l~~~~~~~~l 571 (1013)
.+.+..+|+||+ +|+.. ++++..+-.++.++.+..++.+. | +.+-|
T Consensus 1125 ~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lk-P-~~~~L 1173 (1702)
T KOG0915|consen 1125 KEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELK-P-HFPKL 1173 (1702)
T ss_pred HHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhc-c-hhhHH
Confidence 368888888888 34433 56899999999999999998875 3 44433
No 24
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=96.34 E-value=0.43 Score=53.35 Aligned_cols=200 Identities=14% Similarity=0.214 Sum_probs=100.6
Q ss_pred HHHHHHHhcccCCCCCchhhhhcHHHHHHHHHHHhccchhhhhhhhhhhhhh--HHHHHHHHH-HHHHhcccCCCC---C
Q 001789 328 ALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMF--FSVFSALLD-ALLLRAQVDESS---F 401 (1013)
Q Consensus 328 ~ll~~ll~~~~~p~~d~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~--~~~~~~L~~-~li~k~~~p~~~---~ 401 (1013)
...++|......+.+ +.++..++.|-..+.+. ......| +|++.++++ +++..|.+-+++ |
T Consensus 141 ~vw~lL~~~~~~~~~-D~lv~~al~FL~~v~~~------------~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~Elf 207 (370)
T PF08506_consen 141 AVWNLLTKISQQPKY-DILVSKALQFLSSVAES------------PHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELF 207 (370)
T ss_dssp HHHHHHTC--SSGGG-HHHHHHHHHHHHHHHTS------------HHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHH
T ss_pred HHHHHHHHhhhcccc-cHHHHHHHHHHHHHHcc------------hhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHH
Confidence 456666666555442 34556778885543321 1112233 677777776 445667664331 2
Q ss_pred CCCC------CCCCcchHHHHHHHHHHHHHHHHHhhCch--H----HHHHHHhhhhcCCCCCCCchhhhHHHHHHHhhhh
Q 001789 402 NDDG------MVDLPDGLVQFRMNLVELLVDICQLLRSA--T----FIQKVFFGSWGSANVPIPWKEVETKLFALNVVSE 469 (1013)
Q Consensus 402 ~~~~------~~d~~d~f~~fR~~~~d~l~~~~~~l~~~--~----~l~~~~~~l~~~~~~~~~W~~~Ea~L~~l~~iae 469 (1013)
+||. + -|..|+..-|+...|+++.++.-.+.. . ++..++++...+ ++.+|+..++++|.+++++.
T Consensus 208 EddP~EYIrrd-~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~--~~~~w~~KD~Al~Li~ala~ 284 (370)
T PF08506_consen 208 EDDPEEYIRRD-LEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASN--PSNNWRSKDGALYLIGALAS 284 (370)
T ss_dssp HHSHHHHHHHH-SCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTT-HHHHHHHHHHHHHHHB
T ss_pred ccCHHHHHHhh-ccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhC--CcccHHHHHHHHHHHHHHHh
Confidence 1100 0 112455556777788888877654432 1 222333332222 35689999999999999975
Q ss_pred cccc--cC--CccchHHHHHHHH-----Hhc-cCchhhhhhHHHHHHHHHHHHHHhhHHHHHhchhchHHHHHHHHHhcC
Q 001789 470 VVLQ--EG--QAFDFSVIMQLVA-----VLS-ASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGIS 539 (1013)
Q Consensus 470 ~~~~--~~--~~~~l~~i~~~l~-----~l~-~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~~L~~vl~~l~~~l~ 539 (1013)
.... .+ ....+..+.+++. .|. +... .+-++..+ +..+..+..-+ .++.+..+++.+..+|.
T Consensus 285 k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~-----~piLka~a-ik~~~~Fr~~l--~~~~l~~~~~~l~~~L~ 356 (370)
T PF08506_consen 285 KGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNS-----HPILKADA-IKFLYTFRNQL--PKEQLLQIFPLLVNHLQ 356 (370)
T ss_dssp SS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S------HHHHHHH-HHHHHHHGGGS---HHHHHHHHHHHHHHTT
T ss_pred hhccccCCcccccccccHHHHHHHHhHHHhcccCCC-----CcchHHHH-HHHHHHHHhhC--CHHHHHHHHHHHHHHhC
Confidence 5421 00 0000112233222 222 1111 12244434 57776665533 35788999999999999
Q ss_pred cCc--hHHHHHHHH
Q 001789 540 EAV--SSNACASAL 551 (1013)
Q Consensus 540 ~~~--v~~~Aa~a~ 551 (1013)
++. |..-||.|+
T Consensus 357 ~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 357 SSSYVVHTYAAIAI 370 (370)
T ss_dssp SS-HHHHHHHHHHH
T ss_pred CCCcchhhhhhhhC
Confidence 876 667777664
No 25
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.89 E-value=4.7 Score=46.60 Aligned_cols=215 Identities=10% Similarity=0.129 Sum_probs=125.2
Q ss_pred hhhHHHHHHHHHHHHHhcccCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHhhCchHHHHHHHhhhhcCCCCCCCchh
Q 001789 377 DMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKE 456 (1013)
Q Consensus 377 ~~~~~~~~~L~~~li~k~~~p~~~~~~~~~~d~~d~f~~fR~~~~d~l~~~~~~l~~~~~l~~~~~~l~~~~~~~~~W~~ 456 (1013)
..+.|++..++..++.+.. |-..+.++--.+..+.++.|....|...++...+..+.. ..||.
T Consensus 208 ~~~EPyiv~~lp~il~~~~------------d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~-----~kWrt 270 (569)
T KOG1242|consen 208 PPFEPYIVPILPSILTNFG------------DKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLE-----AKWRT 270 (569)
T ss_pred CCCCchHHhhHHHHHHHhh------------ccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHH-----Hhhhh
Confidence 3455666666666665551 111222332234456677777766666677777766643 26999
Q ss_pred hhHHHHHHHhhhhcccccCCccchHHHHHHHH-Hhcc-CchhhhhhHHHHHHHHHHHHHHhhHHHHHhchhchHHHHHHH
Q 001789 457 VETKLFALNVVSEVVLQEGQAFDFSVIMQLVA-VLSA-SRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFL 534 (1013)
Q Consensus 457 ~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~-~l~~-~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~~L~~vl~~l 534 (1013)
..+++..+++++++.+..-+ ..+|.++..+. .+.+ ||. ++.+. ..++-+|++.++ ||+ +.+.++.|
T Consensus 271 K~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT~~e--------vr~a~-~~~l~~~~svid-N~d-I~~~ip~L 338 (569)
T KOG1242|consen 271 KMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDTKPE--------VRKAG-IETLLKFGSVID-NPD-IQKIIPTL 338 (569)
T ss_pred HHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccCCHH--------HHHHH-HHHHHHHHHhhc-cHH-HHHHHHHH
Confidence 99999999999998774211 11355544443 3332 232 34433 478888888764 566 89999999
Q ss_pred HHhcCcCc-hHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHH-HHHhcCCChhhHHHHHHHHHHHHccCCcHHHHHHHH
Q 001789 535 AAGISEAV-SSNACASALRKICEDASALIDEPSNLEILMWIGE-ALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLL 612 (1013)
Q Consensus 535 ~~~l~~~~-v~~~Aa~a~~~lc~~c~~~l~~~~~~~~l~~~~~-~l~~~~l~~~~~~~l~eai~~ii~~~p~~~~~~~~l 612 (1013)
+.++.+|. -...+.+++.. .-=-+.+.++.+..+.-+.. .+. .-+...+...+.-++.+..-++++.....++
T Consensus 339 ld~l~dp~~~~~e~~~~L~~---ttFV~~V~~psLalmvpiL~R~l~--eRst~~kr~t~~IidNm~~LveDp~~lapfl 413 (569)
T KOG1242|consen 339 LDALADPSCYTPECLDSLGA---TTFVAEVDAPSLALMVPILKRGLA--ERSTSIKRKTAIIIDNMCKLVEDPKDLAPFL 413 (569)
T ss_pred HHHhcCcccchHHHHHhhcc---eeeeeeecchhHHHHHHHHHHHHh--hccchhhhhHHHHHHHHHHhhcCHHHHhhhH
Confidence 99999997 33333333321 11111122335555554442 222 1244556777788888888887766555555
Q ss_pred HHHHHHHHHHHHhhhcc
Q 001789 613 ARLLSSSYEAIGKLIDG 629 (1013)
Q Consensus 613 ~~ll~p~~~~l~~~~~~ 629 (1013)
..|+ ..++..+..
T Consensus 414 ~~Ll----p~lk~~~~d 426 (569)
T KOG1242|consen 414 PSLL----PGLKENLDD 426 (569)
T ss_pred HHHh----hHHHHHhcC
Confidence 5544 455555543
No 26
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.76 E-value=9.8 Score=43.46 Aligned_cols=136 Identities=14% Similarity=0.183 Sum_probs=78.3
Q ss_pred cchHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHhhhhcCCcchH-H----H--HhHHHHHHhcCCC-CcchhHHHH
Q 001789 698 ENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECY-I----R--TASVVIEEFGHKD-EYGPLFVTT 769 (1013)
Q Consensus 698 ~~~~v~e~~c~~~k~~i~~~~~~~~~~l~~l~~~l~~~f~~~~~~~~~-L----~--l~s~li~~~g~~~-~~~~~i~~l 769 (1013)
.++.+-.++...+...+...|....++++.++..++.+...+.+.+.. . . +.+.+....+..+ ++.+.+
T Consensus 262 s~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii--- 338 (675)
T KOG0212|consen 262 SEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSII--- 338 (675)
T ss_pred CcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHH---
Confidence 566677777777777888888899999999888888766554332221 1 1 2222222222211 122222
Q ss_pred HHHHhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHHhhHHHHhcchhchHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 001789 770 FERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSC 849 (1013)
Q Consensus 770 ~~~l~~~t~l~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~l~~~~~~~l~~il~~~l~~l~~~e~~~~~a~~~fl~~ 849 (1013)
+.+. ..+. .+.-|..-..++-+..+..+.|..++.- ...+|...+..+.-..-+++--++..+..
T Consensus 339 -~vl~-----~~l~-----~~~~~tri~~L~Wi~~l~~~~p~ql~~h----~~~if~tLL~tLsd~sd~vvl~~L~lla~ 403 (675)
T KOG0212|consen 339 -EVLT-----KYLS-----DDREETRIAVLNWIILLYHKAPGQLLVH----NDSIFLTLLKTLSDRSDEVVLLALSLLAS 403 (675)
T ss_pred -HHHH-----HHhh-----cchHHHHHHHHHHHHHHHhhCcchhhhh----ccHHHHHHHHhhcCchhHHHHHHHHHHHH
Confidence 2111 1111 4556778888888888888888877743 34455555556665555555555555544
Q ss_pred HH
Q 001789 850 FL 851 (1013)
Q Consensus 850 li 851 (1013)
+.
T Consensus 404 i~ 405 (675)
T KOG0212|consen 404 IC 405 (675)
T ss_pred Hh
Confidence 43
No 27
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.73 E-value=19 Score=42.79 Aligned_cols=248 Identities=12% Similarity=0.077 Sum_probs=129.9
Q ss_pred CchhhhHHH-HHHHhhhhcccccCCccchHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh-chhchHHH
Q 001789 453 PWKEVETKL-FALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA-FQTNARPL 530 (1013)
Q Consensus 453 ~W~~~Ea~L-~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~-~p~~L~~v 530 (1013)
..+++++.| =.|++|-..+.++-. .....++.++.++.+.+... ++...++..||...+-+.. .-+|.+..
T Consensus 567 q~~eLQs~Lc~~Lq~i~rk~~~~~~-~~~d~iM~lflri~~s~~s~------~v~e~a~laV~tl~~~Lg~~F~kym~~f 639 (859)
T KOG1241|consen 567 QLNELQSLLCNTLQSIIRKVGSDIR-EVSDQIMGLFLRIFESKRSA------VVHEEAFLAVSTLAESLGKGFAKYMPAF 639 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHccccch-hHHHHHHHHHHHHHcCCccc------cchHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 356666655 345555444443211 12356788777665543211 1222334444444444433 34688999
Q ss_pred HHHHHHhcCcCc---hHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCcHHH
Q 001789 531 LLFLAAGISEAV---SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKEL 607 (1013)
Q Consensus 531 l~~l~~~l~~~~---v~~~Aa~a~~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~~p~~~~ 607 (1013)
.+|+..+|.+-. |..+|.--..+||+.-...+. |+.......+.+.|.++.+..+.+-.++...|-|.-++..+
T Consensus 640 ~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~-py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~-- 716 (859)
T KOG1241|consen 640 KPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDIL-PYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGAD-- 716 (859)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHh--
Confidence 999999996532 677777777888888887775 44344444556667677777666666777777776665432
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHHHHHHHHHHhhhcccccccccCCCCCCCCchHHHHHHHHHHH
Q 001789 608 KNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPM 687 (1013)
Q Consensus 608 ~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~ 687 (1013)
...|++.++ |++ +++-+...++ ...+..+|.+.|.. .+++.-..|+.++....+ ..-..++...|+++
T Consensus 717 F~~Yl~~vm-~ll---q~as~~~~d~-~~~~~~dYvd~LRe--~~leay~gi~qglk~~~~-----~~~~~p~v~~I~sf 784 (859)
T KOG1241|consen 717 FEPYLEMVM-PLL---QQASSVQTDP-ADDSMVDYVDELRE--GILEAYTGIIQGLKTHAD-----VMLVQPYVPHIISF 784 (859)
T ss_pred HHHHHHHHH-HHH---HHHHhccCCC-CcccHHHHHHHHHH--HHHHHHHHHHHHhhcccc-----hhhhhcchHHHHHH
Confidence 456665554 333 3333222111 22334455443332 123333445555542111 11233455666777
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHHhchhhhh
Q 001789 688 LEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVT 723 (1013)
Q Consensus 688 l~~i~~~~~~~~~~v~e~~c~~~k~~i~~~~~~~~~ 723 (1013)
+..+... -..++.+.-.+..++.-....+|++..+
T Consensus 785 i~~I~~e-~~~~~~~~~~a~GlIgDL~~~fg~~~~~ 819 (859)
T KOG1241|consen 785 IDRIAAE-PDVSEALHAAALGLIGDLATMFGKGVIK 819 (859)
T ss_pred HHHHhcC-cccchHHHHHHHHHHHHHHHHcccchhh
Confidence 7777642 1122333444445555555555544433
No 28
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=92.47 E-value=11 Score=43.27 Aligned_cols=244 Identities=12% Similarity=0.129 Sum_probs=125.4
Q ss_pred CccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHH
Q 001789 565 PSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQ 644 (1013)
Q Consensus 565 ~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~ 644 (1013)
|...+.+..+...+..+ +..+.+.++++|-+++....+.- ..+...+++-+...+..+..++. +|.-
T Consensus 22 p~~~~ll~~Lf~~i~~~--~s~ENeylMk~iMRvl~~~~e~~--~p~~~~il~~L~~il~~v~kNPs------nP~F--- 88 (435)
T PF03378_consen 22 PFAQQLLQNLFALIEKP--GSAENEYLMKCIMRVLSVLQEDI--LPIAVEILQHLTAILKEVSKNPS------NPRF--- 88 (435)
T ss_dssp CCHHHHHHHHHHHHHTT---STC-HHHHHHHHHHHHHSTTTT--GGGHHHHHHHHHHHHHHHHTS---------HHH---
T ss_pred hhHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHhCCC------Ccch---
Confidence 33344455555544322 22778999999999998876532 34444555555566655555432 2211
Q ss_pred HHHHHHHHHHhhhcccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhc-----h
Q 001789 645 ILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSG-----Q 719 (1013)
Q Consensus 645 ~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~k~~i~~~~-----~ 719 (1013)
..-..+.++.++|..... .++-+...-+.+||.+..++++ +-.+.+.-+..++...+..-. +
T Consensus 89 ----nHylFEsi~~lir~~~~~------~~~~v~~~E~~L~P~f~~ILq~---dV~EF~PYvfQIla~Lle~~~~~~~p~ 155 (435)
T PF03378_consen 89 ----NHYLFESIGALIRFVCEA------DPEAVSQFEEALFPPFQEILQQ---DVQEFIPYVFQILAQLLELRPSSPLPD 155 (435)
T ss_dssp ----HHHHHHHHHHHHHHS-GG------GHH---HHHHHHHHHHHHHHHT---T-TTTHHHHHHHHHHHHHHSS--S--T
T ss_pred ----hhhHHHHHHHHHHhccCC------ChhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHcCCCCCCcH
Confidence 122456666666653311 1111334457899999999974 224566667777776666543 2
Q ss_pred hhhhhHHHHHHHHHHhhhhcCCcchHHHHhHHHHHHhcCCCCcchhHHHHHHHHhhHHHHHHhhcCCCCCCCCchHHHHH
Q 001789 720 HFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYT 799 (1013)
Q Consensus 720 ~~~~~l~~l~~~l~~~f~~~~~~~~~L~l~s~li~~~g~~~~~~~~i~~l~~~l~~~t~l~~l~~~~~~~~~pD~~~~~f 799 (1013)
....++|+++... .++.....+....+++..+..-+..-.-.+.+..+++. ++.+.++ +. .| ...|
T Consensus 156 ~y~~L~~~Ll~p~--lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgv------FQkLi~s---k~-~D--~~gF 221 (435)
T PF03378_consen 156 AYKQLFPPLLSPA--LWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGV------FQKLIAS---KA-ND--HYGF 221 (435)
T ss_dssp TTGGGHHHHTSGG--GGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHH------HHHHHT----TT-CH--HHHH
T ss_pred HHHHHHHHHcCcc--hhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHH------HHHHHCC---CC-cc--hHHH
Confidence 3344556554432 23322234556667777777655421001122233331 1222221 11 22 4578
Q ss_pred HHHHHHHHHhhHHHHhcchhchHHHHHHHHHHhccCChh-HHHHHHHHHHHHH
Q 001789 800 NFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRG-AALAAMSYLSCFL 851 (1013)
Q Consensus 800 ~l~~~~l~~~p~~l~~~~~~~l~~il~~~l~~l~~~e~~-~~~a~~~fl~~li 851 (1013)
.++..++.++|...+. +++..++...+.=++....+ -.+.-+.|+.-++
T Consensus 222 ~LL~~iv~~~p~~~l~---~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~ 271 (435)
T PF03378_consen 222 DLLESIVENLPPEALE---PYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFA 271 (435)
T ss_dssp HHHHHHHHHS-HHHHG---GGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHH---HHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHH
Confidence 9999999999997765 46777777666555432222 2444445544333
No 29
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=92.41 E-value=29 Score=41.19 Aligned_cols=179 Identities=9% Similarity=0.069 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHHHhhCchHHHHHHHhhhhcCCCCCCCchhhhHHHHHHHhhhhcccccCCccchHHHHHHHHHhccC
Q 001789 414 VQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSAS 493 (1013)
Q Consensus 414 ~~fR~~~~d~l~~~~~~l~~~~~l~~~~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~ 493 (1013)
.+-|+..-++|-++...+|+..+|..+++.+..+ +-|..=..--+|+-++|.+.. ...++.++... ..
T Consensus 939 K~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvq-----eRq~RvcTtvaIaIVaE~c~p------FtVLPalmneY-rt 1006 (1172)
T KOG0213|consen 939 KEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQ-----ERQNRVCTTVAIAIVAETCGP------FTVLPALMNEY-RT 1006 (1172)
T ss_pred HHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHH-----HHHhchhhhhhhhhhhhhcCc------hhhhHHHHhhc-cC
Confidence 3466777789999999999988888888776321 223333344567777887752 12233332221 12
Q ss_pred chhhhhhHHHHHHHHHHHHHHhhHHHHH----hchhchHHHHHHHHHhcCcCc--hHHHHHHHHHHHHHHhhcccCCCcc
Q 001789 494 RSEELKGFMHIVYRSLADVIGSYSKWIS----AFQTNARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSN 567 (1013)
Q Consensus 494 ~~~~~~~~~~v~~~t~~~~ig~y~~wl~----~~p~~L~~vl~~l~~~l~~~~--v~~~Aa~a~~~lc~~c~~~l~~~~~ 567 (1013)
|..+ ++.- ++.+.+.+|. ...+|+-.+++.|-.+|.+.+ -+..|+.+++.++-.|.... .
T Consensus 1007 Pe~n-------VQnG---VLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g----~ 1072 (1172)
T KOG0213|consen 1007 PEAN-------VQNG---VLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTG----C 1072 (1172)
T ss_pred chhH-------HHHh---HHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcC----c
Confidence 2211 1211 2222233333 245799999999999998754 67889999999988776643 4
Q ss_pred HHHHHHHHHHH-H-hcCCChhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHH
Q 001789 568 LEILMWIGEAL-E-KRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSS 618 (1013)
Q Consensus 568 ~~~l~~~~~~l-~-~~~l~~~~~~~l~eai~~ii~~~p~~~~~~~~l~~ll~p 618 (1013)
.+.+..+..-+ . ...-++.....+.|++-.+-.++.+.......++.|..|
T Consensus 1073 eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~~~~~~Y~~QGLFHP 1125 (1172)
T KOG0213|consen 1073 EDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGPQAMLKYCLQGLFHP 1125 (1172)
T ss_pred HHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhchHHHHHHHHHhccCc
Confidence 45444443322 1 123356777888888877777776644333333334333
No 30
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=92.35 E-value=12 Score=42.92 Aligned_cols=158 Identities=10% Similarity=0.137 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchHHH----HHHHHHHHHHHHHhch---hhhh-hHHHHHHHHHHhhhhcCCcchHHHH
Q 001789 677 IFALLRVFWPMLEKLFRSEHMENGNLS----TAACRALSLAIQSSGQ---HFVT-LLPQVLDCLSTNFVSFQNHECYIRT 748 (1013)
Q Consensus 677 ~~~~~~~i~~~l~~i~~~~~~~~~~v~----e~~c~~~k~~i~~~~~---~~~~-~l~~l~~~l~~~f~~~~~~~~~L~l 748 (1013)
...+++++..++..+.. -++++... |.++.++|..-..-.. .+.+ ++|++...+.++... -.+.++.+
T Consensus 65 ~~~il~~L~~il~~v~k--NPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~E--F~PYvfQI 140 (435)
T PF03378_consen 65 AVEILQHLTAILKEVSK--NPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQE--FIPYVFQI 140 (435)
T ss_dssp HHHHHHHHHHHHHHHHT--S---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TT--THHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--CCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 45566788888877775 35566655 5566665543221111 2333 445544433333321 35667889
Q ss_pred hHHHHHHhcCCCCcchhHHHHHHHHhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHHhhHHHHhcchhchHHHHHHH
Q 001789 749 ASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKA 828 (1013)
Q Consensus 749 ~s~li~~~g~~~~~~~~i~~l~~~l~~~t~l~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~l~~~~~~~l~~il~~~ 828 (1013)
++.+++...+. ...+....++..+..++ .-+.+.-+-..-+|+..++++.|..+... +.++.++...
T Consensus 141 la~Lle~~~~~-~~p~~y~~L~~~Ll~p~----------lWe~~gniPalvrLL~a~i~k~~~~i~~~--~~l~~iLgvF 207 (435)
T PF03378_consen 141 LAQLLELRPSS-PLPDAYKQLFPPLLSPA----------LWERRGNIPALVRLLQAYIKKDPSFIVAN--NQLEPILGVF 207 (435)
T ss_dssp HHHHHHHSS---S--TTTGGGHHHHTSGG----------GGGSTTTHHHHHHHHHHHHHHHGGG------S-CHHHHHHH
T ss_pred HHHHHHcCCCC-CCcHHHHHHHHHHcCcc----------hhccCCCcCcHHHHHHHHHHhCchhhcch--hhHHHHHHHH
Confidence 99999877622 11122222222222222 23445677888899999999999988654 5566665544
Q ss_pred HHHhccCChhHHHHHHHHHHHHHhh
Q 001789 829 AICCTAMHRGAALAAMSYLSCFLEE 853 (1013)
Q Consensus 829 l~~l~~~e~~~~~a~~~fl~~li~~ 853 (1013)
-..+...-.+ ..++.++..++..
T Consensus 208 QkLi~sk~~D--~~gF~LL~~iv~~ 230 (435)
T PF03378_consen 208 QKLIASKAND--HYGFDLLESIVEN 230 (435)
T ss_dssp HHHHT-TTCH--HHHHHHHHHHHHH
T ss_pred HHHHCCCCcc--hHHHHHHHHHHHH
Confidence 3344322111 2355555555544
No 31
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=91.87 E-value=0.22 Score=33.23 Aligned_cols=29 Identities=28% Similarity=0.320 Sum_probs=24.1
Q ss_pred HHHHHHHhcCcCc--hHHHHHHHHHHHHHHh
Q 001789 530 LLLFLAAGISEAV--SSNACASALRKICEDA 558 (1013)
Q Consensus 530 vl~~l~~~l~~~~--v~~~Aa~a~~~lc~~c 558 (1013)
+++.+++.+.||. |+.+|+.++..|++.|
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 4678888899865 9999999999999876
No 32
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=91.81 E-value=34 Score=40.76 Aligned_cols=426 Identities=16% Similarity=0.131 Sum_probs=206.1
Q ss_pred cCCChHHHHHHHHHHHHHhcC-hHHHHHHHHhhccCCCCCCccchHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH
Q 001789 18 HDTESCNRVAANQWLVQFQQT-DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVA 96 (1013)
Q Consensus 18 ~~~d~~~~~~A~~~L~~fq~s-~~aW~~~~~LL~~~~~~~~~~~~~~ffaa~tL~~kI~~~w~~l~~e~~~~lr~~Ll~~ 96 (1013)
.+.|.+.|+-+.=++..+... ++...++..-+..+= .+.++.+|-.|..++-+-. +++..+.+-..+...
T Consensus 52 ~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl--~~~n~~~~~lAL~~l~~i~-------~~~~~~~l~~~v~~l 122 (526)
T PF01602_consen 52 SSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDL--NSPNPYIRGLALRTLSNIR-------TPEMAEPLIPDVIKL 122 (526)
T ss_dssp SSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHH--CSSSHHHHHHHHHHHHHH--------SHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhh--cCCCHHHHHHHHhhhhhhc-------ccchhhHHHHHHHHH
Confidence 356888899999999987665 443555554444321 1345678888888886533 456666666666655
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHchhcc-cCc-hHHHHHHHhhcccCCCcchHHHHHHHhhchhccccccccccCCChHH
Q 001789 97 AKRFSSGPPQLLTQICLALSALILRAVE-HGK-PIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAH 174 (1013)
Q Consensus 97 l~~~~~~~~~v~~kL~~~La~l~~~~~~-W~~-~i~~li~~l~~~~~~~~~~~~~L~iL~~l~EE~~~~~~~~~~l~~~~ 174 (1013)
+. ..++.||++-+.++..++...++ -+. +++.+...+... ++......+.++..+ .. .+..
T Consensus 123 l~---~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~--~~~V~~~a~~~l~~i--~~----------~~~~ 185 (526)
T PF01602_consen 123 LS---DPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDK--DPSVVSAALSLLSEI--KC----------NDDS 185 (526)
T ss_dssp HH---SSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHS--SHHHHHHHHHHHHHH--HC----------THHH
T ss_pred hc---CCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCC--cchhHHHHHHHHHHH--cc----------Ccch
Confidence 54 45679999999999999987652 123 577777777542 343444555555555 10 0000
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhhhccCCCCCcchhhhHHHHHHHHHHHHhcccccccCcchhcccchHHHHHHhccC--
Q 001789 175 RSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQV-- 252 (1013)
Q Consensus 175 r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~L~cl~sWi~~~~~~~~~~~~~~~~~ll~~l~~~L~~-- 252 (1013)
. ....+.++..+.+.+.. .++-....+++++..+.+.. ...-....+++.+...+.+
T Consensus 186 ~-------~~~~~~~~~~L~~~l~~--------~~~~~q~~il~~l~~~~~~~------~~~~~~~~~i~~l~~~l~s~~ 244 (526)
T PF01602_consen 186 Y-------KSLIPKLIRILCQLLSD--------PDPWLQIKILRLLRRYAPME------PEDADKNRIIEPLLNLLQSSS 244 (526)
T ss_dssp H-------TTHHHHHHHHHHHHHTC--------CSHHHHHHHHHHHTTSTSSS------HHHHHHHHHHHHHHHHHHHHH
T ss_pred h-------hhhHHHHHHHhhhcccc--------cchHHHHHHHHHHHhcccCC------hhhhhHHHHHHHHHHHhhccc
Confidence 0 01122333333333322 22345666777776554421 1110003456666655552
Q ss_pred CCcHHHHHHHHHHHhhcCCChhHHHHhhhhhhHHhhhcccccCCcHHHHhHHHHHHHHHHHhhhHHHHhcChhHHHHHHH
Q 001789 253 QSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADA 332 (1013)
Q Consensus 253 ~~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~~~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ 332 (1013)
+...-.|+.++..+.... ...+.+++.+.. .+.+.|.+..--....+..++..+.+.+. ....
T Consensus 245 ~~V~~e~~~~i~~l~~~~-~~~~~~~~~L~~--------lL~s~~~nvr~~~L~~L~~l~~~~~~~v~--------~~~~ 307 (526)
T PF01602_consen 245 PSVVYEAIRLIIKLSPSP-ELLQKAINPLIK--------LLSSSDPNVRYIALDSLSQLAQSNPPAVF--------NQSL 307 (526)
T ss_dssp HHHHHHHHHHHHHHSSSH-HHHHHHHHHHHH--------HHTSSSHHHHHHHHHHHHHHCCHCHHHHG--------THHH
T ss_pred cHHHHHHHHHHHHhhcch-HHHHhhHHHHHH--------HhhcccchhehhHHHHHHHhhcccchhhh--------hhhh
Confidence 122223333333222211 112222222221 22334443222222334444444322222 1111
Q ss_pred HHhcccCCCCCchhhhhcHHHHHHHHHHHhccchhhhhhhhhhhhhhHHHHHHHHHHHHHhcccCCCCCCCCCCCCCcch
Q 001789 333 LLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDG 412 (1013)
Q Consensus 333 ll~~~~~p~~d~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~li~k~~~p~~~~~~~~~~d~~d~ 412 (1013)
.+.+... +.|..|...+++--+.+.+. .....++.+|. .-+. +. .+
T Consensus 308 ~~~~l~~-~~d~~Ir~~~l~lL~~l~~~----------------~n~~~Il~eL~----~~l~-~~---------~d--- 353 (526)
T PF01602_consen 308 ILFFLLY-DDDPSIRKKALDLLYKLANE----------------SNVKEILDELL----KYLS-EL---------SD--- 353 (526)
T ss_dssp HHHHHHC-SSSHHHHHHHHHHHHHH--H----------------HHHHHHHHHHH----HHHH-HC--------------
T ss_pred hhheecC-CCChhHHHHHHHHHhhcccc----------------cchhhHHHHHH----HHHH-hc---------cc---
Confidence 1122222 11455666666654443331 11222333333 2221 00 00
Q ss_pred HHHHHHHHHHHHHHHHHhhCc--hHHHHHHHhhhhcCCCCCCCchhhhHHHHHHHhhhhcccccCCccchHHHHHHHHHh
Q 001789 413 LVQFRMNLVELLVDICQLLRS--ATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVL 490 (1013)
Q Consensus 413 f~~fR~~~~d~l~~~~~~l~~--~~~l~~~~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l 490 (1013)
.+||..+...+..++....+ +.++..++..+... ...-.+.+...+..+....++ .. -..+..++..+
T Consensus 354 -~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~-----~~~~~~~~~~~i~~ll~~~~~-~~---~~~l~~L~~~l 423 (526)
T PF01602_consen 354 -PDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEIS-----GDYVSNEIINVIRDLLSNNPE-LR---EKILKKLIELL 423 (526)
T ss_dssp -HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCT-----GGGCHCHHHHHHHHHHHHSTT-TH---HHHHHHHHHHH
T ss_pred -hhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhc-----cccccchHHHHHHHHhhcChh-hh---HHHHHHHHHHH
Confidence 12777777777776655433 33555444443221 122244445555555443321 11 12233344444
Q ss_pred ccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhchhchHHHHHHHHHhcCc--CchHHHHHHHHHHHHHHhh
Q 001789 491 SASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDAS 559 (1013)
Q Consensus 491 ~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~~L~~vl~~l~~~l~~--~~v~~~Aa~a~~~lc~~c~ 559 (1013)
.+...+. ++. ++++++|+|++.... .+..+.++..+.+.+.. +.++...-.++.++.....
T Consensus 424 ~~~~~~~------~~~-~~~wilGEy~~~~~~-~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~ 486 (526)
T PF01602_consen 424 EDISSPE------ALA-AAIWILGEYGELIEN-TESAPDILRSLIENFIEESPEVKLQILTALAKLFKRNP 486 (526)
T ss_dssp TSSSSHH------HHH-HHHHHHHHHCHHHTT-TTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHhhHHH------HHH-HHHhhhcccCCcccc-cccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCC
Confidence 4433222 333 446999999998876 11455556666655543 4488888888888887654
No 33
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=91.43 E-value=33 Score=39.86 Aligned_cols=228 Identities=10% Similarity=0.104 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHhhhhcCCc--chHHHHhHHHHHHhc
Q 001789 680 LLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNH--ECYIRTASVVIEEFG 757 (1013)
Q Consensus 680 ~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~k~~i~~~~~~~~~~l~~l~~~l~~~f~~~~~~--~~~L~l~s~li~~~g 757 (1013)
-+.+|+....++++ +..++.++++...-+-+......-.. -+...+++.++..|... |. ...|.++.-+++ .|
T Consensus 189 EF~qIF~lc~qiLE--~~~~~SLi~ATLesllrfl~wiPl~y-IfeTnIieLv~~~f~s~-pd~r~~tl~CLtEi~~-L~ 263 (1053)
T COG5101 189 EFPQIFGLCKQILE--YSRDESLIEATLESLLRFLEWIPLDY-IFETNIIELVLEHFNSM-PDTRVATLSCLTEIVD-LG 263 (1053)
T ss_pred hHHHHHHHHHHHHH--hcCChHHHHHHHHHHHHHHhhCchhH-HHHHHHHHHHHHHhccC-CchhHHHHHHHHHHHh-hc
Confidence 35677888888886 67788898887776666554432111 24567889999888754 43 334566655543 46
Q ss_pred CCCCcchhHHHHHHHHhhHHHHHHhhc------------CCCCCCCCchHHHHHHHHHHHHHHhhHHHHhcchhchHHHH
Q 001789 758 HKDEYGPLFVTTFERFSQAASVRALNS------------SYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSF 825 (1013)
Q Consensus 758 ~~~~~~~~i~~l~~~l~~~t~l~~l~~------------~~~~~~~pD~~~~~f~l~~~~l~~~p~~l~~~~~~~l~~il 825 (1013)
+.+.........+..+.+++-+..+.+ .+.-.++-+-++++-.|+..+...+-..+- ++ ...+.++
T Consensus 264 ~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~LA~fL~s~~~~~~~lLE-~~-e~~e~ll 341 (1053)
T COG5101 264 RHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQKLAQFLSSLYEVYISLLE-AR-EMAENLL 341 (1053)
T ss_pred cCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHHHHHHHHHHHHHHHHHhc-Ch-hHHHHHH
Confidence 544333333332222223331111100 001123355566666666666666644433 22 2222222
Q ss_pred ---HHHHHHhccCChhHHHHHHHHHHHHHhhhhhhc-----cCCCC----CCCCc-----chHHHHHHHHHhhhHHHHHH
Q 001789 826 ---QKAAICCTAMHRGAALAAMSYLSCFLEECLASL-----LGYTT----SIPEG-----SFNAMAIQVISHSGEGLVSN 888 (1013)
Q Consensus 826 ---~~~l~~l~~~e~~~~~a~~~fl~~li~~~~~~~-----~~~~~----~~~~~-----~~~~~~~~~~~~~g~~Lv~~ 888 (1013)
.+.+.--+..|++..+.++..|..|+....+.. +|... +.+.+ .-...-..+=...+..++++
T Consensus 342 nah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~s~~istnpn~~~~~pLrkhiY~~ilsq 421 (1053)
T COG5101 342 NAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVGSQAISTNPNQDSTKPLRKHIYIGILSQ 421 (1053)
T ss_pred HHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhccccchhccCCcchhcccchHHHHHHHHHHH
Confidence 233323356799999999999999986543311 11100 00000 00011112234567788999
Q ss_pred HHHHhcCCCcccc-----hhhhhHHHHHHHH
Q 001789 889 VVYALLGVSAMSR-----VHKCATILQQLAA 914 (1013)
Q Consensus 889 ll~~l~g~~~rs~-----~~~~~~iL~~L~~ 914 (1013)
+...+....+|.. .+..+++.+..++
T Consensus 422 LrlvlienMvrPEEVliVendegEivRefvk 452 (1053)
T COG5101 422 LRLVLIENMVRPEEVLIVENDEGEIVREFVK 452 (1053)
T ss_pred HHHHHHHcCCCcceEEEEECCCcHHHHHHhc
Confidence 9999999999987 5678899998875
No 34
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=91.06 E-value=39 Score=39.96 Aligned_cols=136 Identities=10% Similarity=0.032 Sum_probs=78.8
Q ss_pred CchhhhHHHHHHHhhhhcccccCCccchHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhchhch--HHH
Q 001789 453 PWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNA--RPL 530 (1013)
Q Consensus 453 ~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~~L--~~v 530 (1013)
+-..++.++.+|..+-+.....+. .+.+...+.....||.+. |+.-+ +..|+++.+--..--+.+ ..+
T Consensus 51 ~~e~v~~~~~iL~~~l~~~~~~~l---~~~~~~~L~~gL~h~~~~------Vr~l~-l~~l~~~~~~~~~~~~~~~~~~l 120 (503)
T PF10508_consen 51 NREQVELICDILKRLLSALSPDSL---LPQYQPFLQRGLTHPSPK------VRRLA-LKQLGRIARHSEGAAQLLVDNEL 120 (503)
T ss_pred ChHHHHHHHHHHHHHHhccCHHHH---HHHHHHHHHHHhcCCCHH------HHHHH-HHHHHHHhcCCHHHHHHhcCccH
Confidence 455678888888877665543221 466777777766777543 44433 467777643110000111 346
Q ss_pred HHHHHHhcCcCc--hHHHHHHHHHHHHHHhhc--ccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCC
Q 001789 531 LLFLAAGISEAV--SSNACASALRKICEDASA--LIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVS 603 (1013)
Q Consensus 531 l~~l~~~l~~~~--v~~~Aa~a~~~lc~~c~~--~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~~p 603 (1013)
+..+..++.+++ |+..|+.++.++++.-.. .+..+.. ......+.. .-+...|.++++.+..+.+.-+
T Consensus 121 ~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~----~~~L~~l~~-~~~~~vR~Rv~el~v~i~~~S~ 192 (503)
T PF10508_consen 121 LPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNL----LSKLKSLMS-QSSDIVRCRVYELLVEIASHSP 192 (503)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcch----HHHHHHHHh-ccCHHHHHHHHHHHHHHHhcCH
Confidence 777888888876 899999999999853111 1111111 222222111 1145679999999999876544
No 35
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=90.57 E-value=50 Score=40.49 Aligned_cols=538 Identities=13% Similarity=0.109 Sum_probs=249.4
Q ss_pred chhhhHHHHHHHHHHHHhcccccccCcchhcccchHHHHHHhccCCCcHHHHHHHHHHHhhcCCCh-----hHHHHhhhh
Q 001789 208 QLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGL-----PQALLCRVP 282 (1013)
Q Consensus 208 ~~~~l~~~~L~cl~sWi~~~~~~~~~~~~~~~~~ll~~l~~~L~~~~~~~~a~~~l~eil~~~~~~-----~~~l~~~~~ 282 (1013)
.+.+++..++.|+...|..-. .... ......++.+.+-|+++-++-.|+..++.|....-++ ...+++.+.
T Consensus 582 ~DqeVkeraIscmgq~i~~fg--D~l~--~eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~ 657 (1233)
T KOG1824|consen 582 SDQEVKERAISCMGQIIANFG--DFLG--NELPRTLPILLERLGNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELA 657 (1233)
T ss_pred ccHHHHHHHHHHHHHHHHHHh--hhhh--hhhHHHHHHHHHHHhchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHH
Confidence 356789999999998775310 1111 2345677888889999999999999999988765322 233444333
Q ss_pred hhHHhhhcccccCCcHHHHhHHHHHHHHHHHhhhHHHHhcChh-HHHHHHHHHhcccCCCCCchhhhhcHHHHHHHHHHH
Q 001789 283 FLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPE-ALALADALLSCVAFPSEDWEIADSTLQFWSTLASYI 361 (1013)
Q Consensus 283 ~l~~~~~~~~~~~~d~~~~~~l~~l~~~~~e~~~~~l~~~~~~-~~~ll~~ll~~~~~p~~d~~v~~~~l~FW~~l~~~l 361 (1013)
+....-. .+.. ......+..+.++|...+ +.+ ...++.-|..+.+- .|.-+.+.++.|...+.-..
T Consensus 658 ~flrK~~-r~lr-------~~~l~a~~~L~~~~~~~~---~~~~~e~vL~el~~Lise--sdlhvt~~a~~~L~tl~~~~ 724 (1233)
T KOG1824|consen 658 SFLRKNQ-RALR-------LATLTALDKLVKNYSDSI---PAELLEAVLVELPPLISE--SDLHVTQLAVAFLTTLAIIQ 724 (1233)
T ss_pred HHHHHHH-HHHH-------HHHHHHHHHHHHHHhccc---cHHHHHHHHHHhhhhhhH--HHHHHHHHHHHHHHHHHhcc
Confidence 3211100 0110 001111122222221111 111 12233333333332 15567778888865543211
Q ss_pred hccchhhhhhhhhhhhhhHHHHHHHHHHHHHhcccCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHhhC--chHH-HH
Q 001789 362 LGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLR--SATF-IQ 438 (1013)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~li~k~~~p~~~~~~~~~~d~~d~f~~fR~~~~d~l~~~~~~l~--~~~~-l~ 438 (1013)
. ...-.+-..+++.++...+-|--. + .....-..||. .+++ .+.. ..
T Consensus 725 ----p----------s~l~~~~~~iL~~ii~ll~Spllq----g--~al~~~l~~f~----------alV~t~~~~l~y~ 774 (1233)
T KOG1824|consen 725 ----P----------SSLLKISNPILDEIIRLLRSPLLQ----G--GALSALLLFFQ----------ALVITKEPDLDYI 774 (1233)
T ss_pred ----c----------HHHHHHhhhhHHHHHHHhhCcccc----c--hHHHHHHHHHH----------HHHhcCCCCccHH
Confidence 0 111223345556666777666321 1 01111112221 1111 1100 11
Q ss_pred HHHhhhhcC----CCCCCCchhhhHHHHHHHhhhhcccccCCccchHHHHHHHHHhcc-CchhhhhhHHHHHHHHHHHHH
Q 001789 439 KVFFGSWGS----ANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSA-SRSEELKGFMHIVYRSLADVI 513 (1013)
Q Consensus 439 ~~~~~l~~~----~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~-~~~~~~~~~~~v~~~t~~~~i 513 (1013)
.++..+... .....+-|..-+.--|..++...+++... +..-+++..+.+ +.... ++.-+ +..+
T Consensus 775 ~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~----s~a~kl~~~~~s~~s~~~------ikvfa-~Lsl 843 (1233)
T KOG1824|consen 775 SLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSK----SLATKLIQDLQSPKSSDS------IKVFA-LLSL 843 (1233)
T ss_pred HHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccch----hHHHHHHHHHhCCCCchh------HHHHH-Hhhh
Confidence 122222110 00112333333444444445555553222 334445554442 22211 11112 4678
Q ss_pred HhhHHHHHhchhchHHHHHHHHHhcCcCc--hHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHH
Q 001789 514 GSYSKWISAFQTNARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEV 591 (1013)
Q Consensus 514 g~y~~wl~~~p~~L~~vl~~l~~~l~~~~--v~~~Aa~a~~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l 591 (1013)
|+..+-.. +.+-+.....++++++.|. +..+|++|+.++.-. .+ +-++|++.+.++. ++..+..+
T Consensus 844 GElgr~~~--~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vg---nl--~~yLpfil~qi~s------qpk~QyLL 910 (1233)
T KOG1824|consen 844 GELGRRKD--LSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVG---NL--PKYLPFILEQIES------QPKRQYLL 910 (1233)
T ss_pred hhhccCCC--CCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcC---ch--HhHHHHHHHHHhc------chHhHHHH
Confidence 87655222 2222334446778888865 999999999998753 22 3378888877764 56778888
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHHHHHHHHHHhhhcc-----ccccc--
Q 001789 592 VGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTV-----FSHLP-- 664 (1013)
Q Consensus 592 ~eai~~ii~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i-----~~~l~-- 664 (1013)
.-++-.+|.....+. ...+.+.+..-++...+..-. ..+ + -+.+|+..|.-+ +-.++
T Consensus 911 LhSlkevi~~~svd~-~~~~v~~IW~lL~k~cE~~ee-----gtR-------~---vvAECLGkL~l~epesLlpkL~~~ 974 (1233)
T KOG1824|consen 911 LHSLKEVIVSASVDG-LKPYVEKIWALLFKHCECAEE-----GTR-------N---VVAECLGKLVLIEPESLLPKLKLL 974 (1233)
T ss_pred HHHHHHHHHHhccch-hhhhHHHHHHHHHHhcccchh-----hhH-------H---HHHHHhhhHHhCChHHHHHHHHHH
Confidence 888888887655442 233333333322222111000 001 0 112233222100 00000
Q ss_pred -------------ccCCCC-CCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhchhhhhhHHHHHH
Q 001789 665 -------------VPLPTN-PAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLD 730 (1013)
Q Consensus 665 -------------~~~~~~-~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~k~~i~~~~~~~~~~l~~l~~ 730 (1013)
+.+... ...++|.-.++++.+.-....++. .|.+|...+..++-.++..=..-+..++|.++.
T Consensus 975 ~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~d---pDl~VrrvaLvv~nSaahNKpslIrDllpeLLp 1051 (1233)
T KOG1824|consen 975 LRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRD---PDLEVRRVALVVLNSAAHNKPSLIRDLLPELLP 1051 (1233)
T ss_pred hcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhC---CchhHHHHHHHHHHHHHccCHhHHHHHHHHHHH
Confidence 000000 123455555555444444443332 456666666666655544333334556676666
Q ss_pred HHHHhhhhcCCcchHHHHhHHHHHH--hcCCC-------Ccch-hHHHHHHHHhhH------HH-HHHhhcCCCCCCCCc
Q 001789 731 CLSTNFVSFQNHECYIRTASVVIEE--FGHKD-------EYGP-LFVTTFERFSQA------AS-VRALNSSYICDQEPD 793 (1013)
Q Consensus 731 ~l~~~f~~~~~~~~~L~l~s~li~~--~g~~~-------~~~~-~i~~l~~~l~~~------t~-l~~l~~~~~~~~~pD 793 (1013)
.+. ..+. +=+.+|.. .|.-. +.+. .|.-+|..+-.+ +. +..+ ..++.+|-|
T Consensus 1052 ~Ly---~eTk-------vrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscld~~dit~Fl~~~--~~GL~Dhyd 1119 (1233)
T KOG1824|consen 1052 LLY---SETK-------VRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLDRLDITEFLNHV--EDGLEDHYD 1119 (1233)
T ss_pred HHH---Hhhh-------hhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhhhhccHHHHHHHH--HhhcchhhH
Confidence 553 3331 11122221 12211 0111 121122211111 11 1111 136678889
Q ss_pred hHHHHHHHHHHHHHHhhHHHHhcchhchHHHHHHHHHHhcc--------C----ChhHHHHHHHHHHHHH
Q 001789 794 LVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTA--------M----HRGAALAAMSYLSCFL 851 (1013)
Q Consensus 794 ~~~~~f~l~~~~l~~~p~~l~~~~~~~l~~il~~~l~~l~~--------~----e~~~~~a~~~fl~~li 851 (1013)
+.-=.|-++.+....||+.+++- ++.+++-.-..+++ + .-+..|+|++-+..+.
T Consensus 1120 iKmlt~l~l~rLa~lcPs~Vlqr----lD~l~EpLr~t~~~k~k~~svKqE~ek~~eLkRSAlRav~~L~ 1185 (1233)
T KOG1824|consen 1120 IKMLTFLMLARLADLCPSAVLQR----LDRLVEPLRKTCTLKVKANSVKQEFEKQDELKRSALRAVAALL 1185 (1233)
T ss_pred HHHHHHHHHHHHHhhCcHHHHHH----HHHHHHHHHHHhhcccccchHhHhHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999863 55555432222321 1 2345778887777764
No 36
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=89.48 E-value=16 Score=40.28 Aligned_cols=169 Identities=9% Similarity=0.141 Sum_probs=101.1
Q ss_pred hhHHHHHHHHHHHHhcccccccCcchhcccchHHHHHH-----hc-cCCCcHH-HHHHHHHHHhhcCC----ChhHHHHh
Q 001789 211 DRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFN-----SL-QVQSSFD-VAIEVLVELVGRHE----GLPQALLC 279 (1013)
Q Consensus 211 ~l~~~~L~cl~sWi~~~~~~~~~~~~~~~~~ll~~l~~-----~L-~~~~~~~-~a~~~l~eil~~~~----~~~~~l~~ 279 (1013)
.++..+|+-+..||.... +.+. ....+++.+++ .- ..|+.++ ....++..++.+.. +....++.
T Consensus 42 ~iKkeIL~Li~t~i~~~~----~~~~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~ 116 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAE----DPEE-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILE 116 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-----HHH-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhccC----CHHH-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 366788888899998541 1122 23334444443 21 2456665 46677777777543 22333333
Q ss_pred hhhh-hHHhhhcccccCCcHHHHhHHHHHHHHHHHhhhHHHHhcCh-hHHHHHHHHHhcccCCCCCchhhhhcHHHHHHH
Q 001789 280 RVPF-LKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASP-EALALADALLSCVAFPSEDWEIADSTLQFWSTL 357 (1013)
Q Consensus 280 ~~~~-l~~~~~~~~~~~~d~~~~~~l~~l~~~~~e~~~~~l~~~~~-~~~~ll~~ll~~~~~p~~d~~v~~~~l~FW~~l 357 (1013)
.+.. ..+.+. .--++-+|...++-+++..+.+.+...+..-|+ .+..+++.++....|+ +.+|++.+++.-..+
T Consensus 117 ~vf~~Tl~MI~--~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~--~~~I~~~~L~~l~~l 192 (319)
T PF08767_consen 117 AVFECTLPMIN--KDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHT--NREISETGLNILLEL 192 (319)
T ss_dssp HHHHHHHHHHS--STSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSS--SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHH
Confidence 3322 111111 111234688889999999999988888877554 5567899999999998 789999999888877
Q ss_pred HHHHhccchhhhhhhhhhhhhhHHHHHHHHHHHHHhc
Q 001789 358 ASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRA 394 (1013)
Q Consensus 358 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~li~k~ 394 (1013)
.+.+...+. +.....|+.+|..++..++.-+
T Consensus 193 l~~~~~~~~------~~~~~F~~~y~~~il~~if~vl 223 (319)
T PF08767_consen 193 LNNVSKTNP------EFANQFYQQYYLDILQDIFSVL 223 (319)
T ss_dssp HHHHHH-SH------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 776653111 2334556666666666555544
No 37
>PRK09687 putative lyase; Provisional
Probab=87.12 E-value=47 Score=35.73 Aligned_cols=208 Identities=15% Similarity=0.110 Sum_probs=115.6
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchHHHHHHHHHHHHHhcCCCCCChHHHHH
Q 001789 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDA 88 (1013)
Q Consensus 9 v~~av~~ly~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaa~tL~~kI~~~w~~l~~e~~~~ 88 (1013)
+...+..|. ++|...|..|...|.++. +++++..+..++.++ +..+|.+|+.+|.. +.. +......
T Consensus 25 ~~~L~~~L~-d~d~~vR~~A~~aL~~~~-~~~~~~~l~~ll~~~------d~~vR~~A~~aLg~-lg~-----~~~~~~~ 90 (280)
T PRK09687 25 DDELFRLLD-DHNSLKRISSIRVLQLRG-GQDVFRLAIELCSSK------NPIERDIGADILSQ-LGM-----AKRCQDN 90 (280)
T ss_pred HHHHHHHHh-CCCHHHHHHHHHHHHhcC-cchHHHHHHHHHhCC------CHHHHHHHHHHHHh-cCC-----CccchHH
Confidence 344445554 678889999999998775 699999999988764 46999999999975 221 1110111
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHchhccc-CchHHHHHHHhhccc--------------CCCcchHHHHHHH
Q 001789 89 LLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEH-GKPIEKLFYSLQNLQ--------------SQDNGNMAVLEML 153 (1013)
Q Consensus 89 lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~~W-~~~i~~li~~l~~~~--------------~~~~~~~~~L~iL 153 (1013)
.-..|...+. ......|+...+.+|..+......| +..+..+...+.... +++...+.++..|
T Consensus 91 a~~~L~~l~~--~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L 168 (280)
T PRK09687 91 VFNILNNLAL--EDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLL 168 (280)
T ss_pred HHHHHHHHHh--cCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Confidence 1122222222 1344678888888888775443334 444444443332210 0122223333333
Q ss_pred hhchhccccccccccCCChHHHHHHHHHHHh---hhhHHHHHHHHhhhhccCCCCCcchhhhHHHHHHHHHHHHhccccc
Q 001789 154 TVLPEEVIDSQASDCNISSAHRSQYGQELLS---HTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFT 230 (1013)
Q Consensus 154 ~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~---~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~L~cl~sWi~~~~~~ 230 (1013)
+ .+ ...-|..-...|.. ..+.+...|...+.. .+..++..+...+.. ++
T Consensus 169 ~---d~-----------~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D--------~~~~VR~~A~~aLg~---~~--- 220 (280)
T PRK09687 169 K---DP-----------NGDVRNWAAFALNSNKYDNPDIREAFVAMLQD--------KNEEIRIEAIIGLAL---RK--- 220 (280)
T ss_pred c---CC-----------CHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC--------CChHHHHHHHHHHHc---cC---
Confidence 2 10 11233333333433 255666666666543 234566666665543 11
Q ss_pred ccCcchhcccchHHHHHHhccCCCcHHHHHHHHHHHhh
Q 001789 231 EISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVG 268 (1013)
Q Consensus 231 ~~~~~~~~~~~ll~~l~~~L~~~~~~~~a~~~l~eil~ 268 (1013)
...-++.+++.|.++..+..+++.+.++-.
T Consensus 221 --------~~~av~~Li~~L~~~~~~~~a~~ALg~ig~ 250 (280)
T PRK09687 221 --------DKRVLSVLIKELKKGTVGDLIIEAAGELGD 250 (280)
T ss_pred --------ChhHHHHHHHHHcCCchHHHHHHHHHhcCC
Confidence 234677778888888777777777766554
No 38
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.69 E-value=92 Score=38.61 Aligned_cols=115 Identities=11% Similarity=0.052 Sum_probs=71.9
Q ss_pred HHHHHHHhhHHHHHhchh---ch-HHHHHHHHHhcCcCc--hHHHHHHHHHHHHHH-hhcccCCCc-cHHHHHHHHHHHH
Q 001789 508 SLADVIGSYSKWISAFQT---NA-RPLLLFLAAGISEAV--SSNACASALRKICED-ASALIDEPS-NLEILMWIGEALE 579 (1013)
Q Consensus 508 t~~~~ig~y~~wl~~~p~---~L-~~vl~~l~~~l~~~~--v~~~Aa~a~~~lc~~-c~~~l~~~~-~~~~l~~~~~~l~ 579 (1013)
.++.++|+.++.+.+..- -+ .-+++.++..+..|. ++++||..+..+|+. -+. +. ...++......+.
T Consensus 437 GAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d----~~~l~~ale~t~~~l~ 512 (1010)
T KOG1991|consen 437 GALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKD----PNNLSEALELTHNCLL 512 (1010)
T ss_pred hHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCC----hHHHHHHHHHHHHHhc
Confidence 346899999998876432 22 245677778888775 899999999999843 222 11 2233333444443
Q ss_pred hcCCChhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhhhccc
Q 001789 580 KRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGD 630 (1013)
Q Consensus 580 ~~~l~~~~~~~l~eai~~ii~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~ 630 (1013)
+ +-+-..+..-.-|+-..|+..+. ...++...+.|+++.+-.+.+..
T Consensus 513 ~-d~~lPV~VeAalALq~fI~~~~~---~~e~~~~hvp~~mq~lL~L~ne~ 559 (1010)
T KOG1991|consen 513 N-DNELPVRVEAALALQSFISNQEQ---ADEKVSAHVPPIMQELLKLSNEV 559 (1010)
T ss_pred c-CCcCchhhHHHHHHHHHHhcchh---hhhhHhhhhhHHHHHHHHHHHhc
Confidence 2 11223444555566677776543 34567888888888888887764
No 39
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=86.58 E-value=91 Score=38.45 Aligned_cols=85 Identities=15% Similarity=0.246 Sum_probs=55.0
Q ss_pred HHHHhhccCCCCCCccchHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHchhc
Q 001789 44 IATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV 123 (1013)
Q Consensus 44 ~~~~LL~~~~~~~~~~~~~~ffaa~tL~~kI~~~w~~l~~e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~ 123 (1013)
+...|+..-. +.|-..||.|..=|-+.++++--.|..|.-.-+-.-|+..+. ..+.-|.+--.-+++-++-+..
T Consensus 6 ~~i~Llekmt---ssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~---D~ngEVQnlAVKClg~lvsKvk 79 (1233)
T KOG1824|consen 6 VGINLLEKMT---SSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLE---DKNGEVQNLAVKCLGPLVSKVK 79 (1233)
T ss_pred HHHHHHHHcc---CCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHh---ccCcHHHHHHHHHHHHHHhhch
Confidence 3335554433 456789999999999999999888887776666666666654 3344566655567777775544
Q ss_pred ccCchHHHHHHHh
Q 001789 124 EHGKPIEKLFYSL 136 (1013)
Q Consensus 124 ~W~~~i~~li~~l 136 (1013)
.+-+.++++.+
T Consensus 80 --e~~le~~ve~L 90 (1233)
T KOG1824|consen 80 --EDQLETIVENL 90 (1233)
T ss_pred --HHHHHHHHHHH
Confidence 23344444443
No 40
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=86.34 E-value=2.3 Score=37.29 Aligned_cols=39 Identities=15% Similarity=0.045 Sum_probs=34.8
Q ss_pred hhchHHHHHHHHHhcCcCc--hHHHHHHHHHHHHHHhhccc
Q 001789 524 QTNARPLLLFLAAGISEAV--SSNACASALRKICEDASALI 562 (1013)
Q Consensus 524 p~~L~~vl~~l~~~l~~~~--v~~~Aa~a~~~lc~~c~~~l 562 (1013)
.+|++.+++-++.++.+++ |+-.||.++.+|++.++..+
T Consensus 22 ~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~ 62 (97)
T PF12755_consen 22 SKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEI 62 (97)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999865 99999999999999998765
No 41
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=85.47 E-value=38 Score=33.12 Aligned_cols=111 Identities=10% Similarity=0.013 Sum_probs=80.5
Q ss_pred CCCCchHHHHHHHHHHHHHHh-hHHHHhcchhchHHHHHHHHHHhccCC-hhHHHHHHHHHHHHHhhhhhhccCCCCCCC
Q 001789 789 DQEPDLVEAYTNFASTFVRTS-RKEVLAASGALLEVSFQKAAICCTAMH-RGAALAAMSYLSCFLEECLASLLGYTTSIP 866 (1013)
Q Consensus 789 ~~~pD~~~~~f~l~~~~l~~~-p~~l~~~~~~~l~~il~~~l~~l~~~e-~~~~~a~~~fl~~li~~~~~~~~~~~~~~~ 866 (1013)
+.+|+-+-....++...++.| +..|.....+++..++. -+..++ +.+.++++..++.++....+ .|
T Consensus 36 s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~----~L~~~~~~~~~~~ai~~L~~l~~~~~~-------~p- 103 (165)
T PF08167_consen 36 SKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLS----ILEKPDPPSVLEAAIITLTRLFDLIRG-------KP- 103 (165)
T ss_pred CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH----HHcCCCCHHHHHHHHHHHHHHHHHhcC-------CC-
Confidence 355888889999999999999 66666654455555443 454444 45578888888888877532 11
Q ss_pred CcchHHHHHHHHHhhhHHHHHHHHHHhcCCCcccchhhhhHHHHHHHHHhchh
Q 001789 867 EGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVHKCATILQQLAAICSIS 919 (1013)
Q Consensus 867 ~~~~~~~~~~~~~~~g~~Lv~~ll~~l~g~~~rs~~~~~~~iL~~L~~~~~~~ 919 (1013)
+..+++..++.+.++..++.-+.+ -+..+..-+.|..++..||..
T Consensus 104 -----~l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~~~ptt 148 (165)
T PF08167_consen 104 -----TLTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLLPHHPTT 148 (165)
T ss_pred -----chHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHCCcc
Confidence 457788888899999999887764 345667778888999888855
No 42
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=83.63 E-value=17 Score=37.73 Aligned_cols=139 Identities=16% Similarity=0.119 Sum_probs=80.2
Q ss_pred CCCCchhhhHHHHHHHhhhhcccccCCccchHHHHHHHH----Hhcc-CchhhhhhHHHHHHHHHHHHHHhhHHHHHhch
Q 001789 450 VPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVA----VLSA-SRSEELKGFMHIVYRSLADVIGSYSKWISAFQ 524 (1013)
Q Consensus 450 ~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~----~l~~-~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p 524 (1013)
.+.+|.....++=-+.++...-...+. .+.++..+. .+.. ....+. .+. .++|.+++..+.-+..+-
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~---~~~~~~~l~~~~~~i~~~l~d~Rs----~v~-~~A~~~l~~l~~~l~~~~ 88 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDF---PPDFVECLRQLLDAIIKQLSDLRS----KVS-KTACQLLSDLARQLGSHF 88 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B--------HHHHHHHH---HHHHH-S-HH-------HH-HHHHHHHHHHHHHHGGGG
T ss_pred CccCHHHHHHHHHHHHHHHHcCCcccc---HHHHHHHHHHhHHHHHHHHhhhHH----HHH-HHHHHHHHHHHHHHhHhH
Confidence 356799999999888887554411111 233433333 2221 111111 133 355689999988887764
Q ss_pred -hchHHHHHHHHHhcCcCc--hHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHcc
Q 001789 525 -TNARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGS 601 (1013)
Q Consensus 525 -~~L~~vl~~l~~~l~~~~--v~~~Aa~a~~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~ 601 (1013)
.++..+++.|++.+.++. ++.+|..++..+|+.|... +.. +........ ..-++..|....+.+..++..
T Consensus 89 ~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~---~~~---~~~~l~~~~-~~Kn~~vR~~~~~~l~~~l~~ 161 (228)
T PF12348_consen 89 EPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYS---PKI---LLEILSQGL-KSKNPQVREECAEWLAIILEK 161 (228)
T ss_dssp HHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HH---HHHHHHHHT-T-S-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH---HHH---HHHHHHHHH-hCCCHHHHHHHHHHHHHHHHH
Confidence 367888888888888754 8899999999999988710 111 122221111 223577899999999999998
Q ss_pred CC
Q 001789 602 VS 603 (1013)
Q Consensus 602 ~p 603 (1013)
.+
T Consensus 162 ~~ 163 (228)
T PF12348_consen 162 WG 163 (228)
T ss_dssp --
T ss_pred cc
Confidence 88
No 43
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=82.60 E-value=98 Score=35.56 Aligned_cols=59 Identities=19% Similarity=0.202 Sum_probs=51.5
Q ss_pred CchHHHHHHHHHHHHHHhhHHHHhcchhchHHHHHHHHHHhccCChhHHHHHHHHHHHHHhh
Q 001789 792 PDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEE 853 (1013)
Q Consensus 792 pD~~~~~f~l~~~~l~~~p~~l~~~~~~~l~~il~~~l~~l~~~e~~~~~a~~~fl~~li~~ 853 (1013)
.+....|+.-+..++++.|..++. +.++.++...+.++..++.+...++++.+..++..
T Consensus 337 ~~~k~~yL~ALs~ll~~vP~~vl~---~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 337 DEIKSNYLTALSHLLKNVPKSVLL---PELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE 395 (415)
T ss_pred hhhHHHHHHHHHHHHhhCCHHHHH---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 347889999999999999998886 46888999999999999999999999988888853
No 44
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=82.21 E-value=7 Score=34.34 Aligned_cols=87 Identities=13% Similarity=0.076 Sum_probs=57.5
Q ss_pred hHHHHHHHhhhhcccccCCccchHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh-chhchHHHHHHHHH
Q 001789 458 ETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA-FQTNARPLLLFLAA 536 (1013)
Q Consensus 458 Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~-~p~~L~~vl~~l~~ 536 (1013)
-++|.++.+++-++...-. ..++.|++.+.....++..+ ||+.+ |+.+...++.... .-.+++.+++.|++
T Consensus 4 ~ggli~Laa~ai~l~~~~~-~~l~~Il~pVL~~~~D~d~r------VRy~A-cEaL~ni~k~~~~~~l~~f~~IF~~L~k 75 (97)
T PF12755_consen 4 KGGLIGLAAVAIALGKDIS-KYLDEILPPVLKCFDDQDSR------VRYYA-CEALYNISKVARGEILPYFNEIFDALCK 75 (97)
T ss_pred hHHHHHHHHHHHHchHhHH-HHHHHHHHHHHHHcCCCcHH------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788899998888875422 12556666555555555433 68866 5888888887654 23467888888898
Q ss_pred hcCcCc--hHHHHHHHHHH
Q 001789 537 GISEAV--SSNACASALRK 553 (1013)
Q Consensus 537 ~l~~~~--v~~~Aa~a~~~ 553 (1013)
.+.+|+ |+..| ..+-+
T Consensus 76 l~~D~d~~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 76 LSADPDENVRSAA-ELLDR 93 (97)
T ss_pred HHcCCchhHHHHH-HHHHH
Confidence 888865 66554 44443
No 45
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=80.77 E-value=36 Score=39.47 Aligned_cols=166 Identities=10% Similarity=0.078 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHhhhhcCCCCCCCchhhhHHHHHHHhhhhcccccCCccchHHHHHHHHHhccCc
Q 001789 415 QFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASR 494 (1013)
Q Consensus 415 ~fR~~~~d~l~~~~~~l~~~~~l~~~~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~ 494 (1013)
+-|+..-+++-.+...+|+..+|..+++.+.. .+-|..=..--+++-+||.+-. ...++.++... ..|
T Consensus 745 eiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkv-----qeRq~RvctsvaI~iVae~cgp------fsVlP~lm~dY-~TP 812 (975)
T COG5181 745 EIRRNATETFGCISRAIGPQDVLDILLNNLKV-----QERQQRVCTSVAISIVAEYCGP------FSVLPTLMSDY-ETP 812 (975)
T ss_pred HHHHhhhhhhhhHHhhcCHHHHHHHHHhcchH-----HHHHhhhhhhhhhhhhHhhcCc------hhhHHHHHhcc-cCc
Confidence 44566667888888889998888888776632 1233333444567777877642 12222222211 223
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhHHHHHh----chhchHHHHHHHHHhcCc--CchHHHHHHHHHHHHHHhhcccCCCccH
Q 001789 495 SEELKGFMHIVYRSLADVIGSYSKWISA----FQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALIDEPSNL 568 (1013)
Q Consensus 495 ~~~~~~~~~v~~~t~~~~ig~y~~wl~~----~p~~L~~vl~~l~~~l~~--~~v~~~Aa~a~~~lc~~c~~~l~~~~~~ 568 (1013)
..+ ++.- ++...+.+|.. .-+|...+.+.|-.+|.+ |.-+..|+.-++.|.-.|.... ..
T Consensus 813 e~n-------VQnG---vLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg----~e 878 (975)
T COG5181 813 EAN-------VQNG---VLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTG----DE 878 (975)
T ss_pred hhH-------HHHh---HHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcc----cH
Confidence 211 1111 22223333332 346888899999999986 4468889999999998898754 44
Q ss_pred HHHHHHHHHHH-h-cCCChhhHHHHHHHHHHHHccCCcHH
Q 001789 569 EILMWIGEALE-K-RHLPLEDEEEVVGAISLILGSVSNKE 606 (1013)
Q Consensus 569 ~~l~~~~~~l~-~-~~l~~~~~~~l~eai~~ii~~~p~~~ 606 (1013)
+....+..-+- + ..-++.....+-||+-.+..++.+.-
T Consensus 879 da~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g~ 918 (975)
T COG5181 879 DAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSGA 918 (975)
T ss_pred HHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccHH
Confidence 44444333221 1 22256677777777777777766543
No 46
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=80.34 E-value=1.6e+02 Score=36.38 Aligned_cols=227 Identities=15% Similarity=0.154 Sum_probs=107.2
Q ss_pred chHHHHHHHHHHHHHHHHHhhhcc--chHHHHHHHHHHHHHHHHhchhhh-hhHHHHHHHHHHhhhhcCCcchHHHHhHH
Q 001789 675 DPIFALLRVFWPMLEKLFRSEHME--NGNLSTAACRALSLAIQSSGQHFV-TLLPQVLDCLSTNFVSFQNHECYIRTASV 751 (1013)
Q Consensus 675 ~p~~~~~~~i~~~l~~i~~~~~~~--~~~v~e~~c~~~k~~i~~~~~~~~-~~l~~l~~~l~~~f~~~~~~~~~L~l~s~ 751 (1013)
+++.+....++..+.++..+ +.. ..-++|++|.+++.-=... ..+. .+.|.++..++ .|. ..+.+..++.-
T Consensus 522 ~vl~~~~p~ild~L~qlas~-~s~evl~llmE~Ls~vv~~dpef~-as~~skI~P~~i~lF~-k~s---~DP~V~~~~qd 595 (1005)
T KOG2274|consen 522 KVLLSLQPMILDGLLQLASK-SSDEVLVLLMEALSSVVKLDPEFA-ASMESKICPLTINLFL-KYS---EDPQVASLAQD 595 (1005)
T ss_pred eeccccchHHHHHHHHHccc-ccHHHHHHHHHHHHHHhccChhhh-hhhhcchhHHHHHHHH-Hhc---CCchHHHHHHH
Confidence 45555555666666665542 321 2235677777776421110 0111 12333333322 343 23343344333
Q ss_pred HHHHhcCC-CCcchhHHHHHHHHhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHHhhHHHHhcchhchHHHHHHHHH
Q 001789 752 VIEEFGHK-DEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAI 830 (1013)
Q Consensus 752 li~~~g~~-~~~~~~i~~l~~~l~~~t~l~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~l~~~~~~~l~~il~~~l~ 830 (1013)
+++..-+. ..+.+....++..+ +..++. ++-..++.+..-.+++++.++|+.|.-+-+ ......|.-...
T Consensus 596 ~f~el~q~~~~~g~m~e~~iPsl-----isil~~-~~~~~~~~l~~~aidvLttvvr~tp~pL~~---~l~~~~FpaVak 666 (1005)
T KOG2274|consen 596 LFEELLQIAANYGPMQERLIPSL-----ISVLQL-NADKAPAGLCAIAIDVLTTVLRNTPSPLPN---LLICYAFPAVAK 666 (1005)
T ss_pred HHHHHHHHHHhhcchHHHHHHHH-----HHHHcC-cccccCchhhHHHHHHHHHHHhcCCCCccH---HHHHHHhHHhHh
Confidence 33332211 11223333333322 222332 233455777777888899999998765332 233444443333
Q ss_pred Hhc-cCChhHHHHHHHHHHHHHhhhhhhccCCCCCCCCcc---hHHHHHHHHH----hhhHHHHHHHHHHhcCCCcccch
Q 001789 831 CCT-AMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGS---FNAMAIQVIS----HSGEGLVSNVVYALLGVSAMSRV 902 (1013)
Q Consensus 831 ~l~-~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~---~~~~~~~~~~----~~g~~Lv~~ll~~l~g~~~rs~~ 902 (1013)
+.- ..+.+....+...+..+|+.......+ +...+.-. ....+.+++. ..+...|--++..+...++|-.-
T Consensus 667 ~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t-~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~ 745 (1005)
T KOG2274|consen 667 ITLHSDDHETLQNATECLRALISVTLEQLLT-WHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELG 745 (1005)
T ss_pred heeecCChHHHHhHHHHHHHHHhcCHHHHHh-hccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhc
Confidence 333 346777888889999999875432111 11111111 1233333332 23333444444444444455555
Q ss_pred hhhhHHHHHHHHHhc
Q 001789 903 HKCATILQQLAAICS 917 (1013)
Q Consensus 903 ~~~~~iL~~L~~~~~ 917 (1013)
+....||++.+++..
T Consensus 746 ~n~d~IL~Avisrmq 760 (1005)
T KOG2274|consen 746 PNLDQILRAVISRLQ 760 (1005)
T ss_pred hhHHHHHHHHHHHHH
Confidence 666677777777654
No 47
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=79.63 E-value=56 Score=33.82 Aligned_cols=138 Identities=18% Similarity=0.221 Sum_probs=77.3
Q ss_pred cchHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHhhhhcCC--cchHHHHhHHHHHHhcCCCCcchhH-HHHHHHHh
Q 001789 698 ENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQN--HECYIRTASVVIEEFGHKDEYGPLF-VTTFERFS 774 (1013)
Q Consensus 698 ~~~~v~e~~c~~~k~~i~~~~~~~~~~l~~l~~~l~~~f~~~~~--~~~~L~l~s~li~~~g~~~~~~~~i-~~l~~~l~ 774 (1013)
..+.|+-.+|.+++..+..++..+.|+++.++..++.....+.. ......++..++...+ +.+.+ ...+.
T Consensus 65 ~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~----~~~~~~~~~l~--- 137 (228)
T PF12348_consen 65 LRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS----YSPKILLEILS--- 137 (228)
T ss_dssp H---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-----H--HHHHHHHH---
T ss_pred hHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC----cHHHHHHHHHH---
Confidence 34568899999999999999999999988888888776543210 0011123333333222 01111 11111
Q ss_pred hHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHHhh--HHHHhcchhchHHHHHHHHHHhccCChhHHHHHHHHHHHHHh
Q 001789 775 QAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSR--KEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLE 852 (1013)
Q Consensus 775 ~~t~l~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p--~~l~~~~~~~l~~il~~~l~~l~~~e~~~~~a~~~fl~~li~ 852 (1013)
. . .-+-+|.++.....++..++..++ ...+.. ...++.+......++.-.++++-.+|-..+..+..
T Consensus 138 ~------~----~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~-~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 138 Q------G----LKSKNPQVREECAEWLAIILEKWGSDSSVLQK-SAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp H------H----TT-S-HHHHHHHHHHHHHHHTT-----GGG---HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred H------H----HhCCCHHHHHHHHHHHHHHHHHccchHhhhcc-cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 1 1 114669999999999999999998 222322 13356677777777777777776666665555544
Q ss_pred h
Q 001789 853 E 853 (1013)
Q Consensus 853 ~ 853 (1013)
.
T Consensus 207 ~ 207 (228)
T PF12348_consen 207 H 207 (228)
T ss_dssp H
T ss_pred H
Confidence 3
No 48
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=78.74 E-value=4.7 Score=30.97 Aligned_cols=50 Identities=20% Similarity=0.122 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhHHHHH-hchhchHHHHHHHHHhcCcCc--hHHHHHHHHHHH
Q 001789 504 IVYRSLADVIGSYSKWIS-AFQTNARPLLLFLAAGISEAV--SSNACASALRKI 554 (1013)
Q Consensus 504 v~~~t~~~~ig~y~~wl~-~~p~~L~~vl~~l~~~l~~~~--v~~~Aa~a~~~l 554 (1013)
+|..+ ++.+|+.+.--. .-..+++.+++.|+..+.|+. |+..|+.|+.+|
T Consensus 3 vR~~A-~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 3 VRRAA-AWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHH-HHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHH-HHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 56655 588986442111 112378899999999998754 999999998754
No 49
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=76.96 E-value=1.6e+02 Score=34.63 Aligned_cols=256 Identities=13% Similarity=0.102 Sum_probs=127.1
Q ss_pred HHHHHHHhhCch--HHHHHHHhhhhcCCCCCCCchhhhHHHHHHHhhhhcccccCCccchHHHHHHHHHhccCchhhhhh
Q 001789 423 LLVDICQLLRSA--TFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKG 500 (1013)
Q Consensus 423 ~l~~~~~~l~~~--~~l~~~~~~l~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~ 500 (1013)
.+...+..+|+. -++..++-.+..+. ++..=.-.+|+-.+..++-.+++...-. ..++.+|..+-+. ..+.+
T Consensus 198 a~~~~~~~Lg~~~EPyiv~~lp~il~~~-~d~~~~Vr~Aa~~a~kai~~~~~~~aVK---~llpsll~~l~~~-kWrtK- 271 (569)
T KOG1242|consen 198 AFEAAQGNLGPPFEPYIVPILPSILTNF-GDKINKVREAAVEAAKAIMRCLSAYAVK---LLLPSLLGSLLEA-KWRTK- 271 (569)
T ss_pred HHHHHHHhcCCCCCchHHhhHHHHHHHh-hccchhhhHHHHHHHHHHHHhcCcchhh---HhhhhhHHHHHHH-hhhhH-
Confidence 344555567753 23443333332211 1112334589999999998888743321 2234455554433 11110
Q ss_pred HHHHHHHHHHHHHHhhHHHHH-hchhchHHHHHHHHHhcCc--CchHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHH
Q 001789 501 FMHIVYRSLADVIGSYSKWIS-AFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALIDEPSNLEILMWIGEA 577 (1013)
Q Consensus 501 ~~~v~~~t~~~~ig~y~~wl~-~~p~~L~~vl~~l~~~l~~--~~v~~~Aa~a~~~lc~~c~~~l~~~~~~~~l~~~~~~ 577 (1013)
. ....++|...+--. .+..+++.+++.+.+.|.| |+++.++-.++.++|+--+..... .+.|-+.+ .
T Consensus 272 -----~-aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~-~~ip~Lld---~ 341 (569)
T KOG1242|consen 272 -----M-ASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQ-KIIPTLLD---A 341 (569)
T ss_pred -----H-HHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHH-HHHHHHHH---H
Confidence 1 12467775554221 2345778888888899986 679999999999999765442210 12233333 2
Q ss_pred HHhcCCChhhHHHHHHHHHH--HHccCCcHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHHHHHHHHHHh
Q 001789 578 LEKRHLPLEDEEEVVGAISL--ILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYR 655 (1013)
Q Consensus 578 l~~~~l~~~~~~~l~eai~~--ii~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 655 (1013)
+..+. ..-...+.+++. .+..+..+. + .++-|++.+ -++....+ .. ...+..++.
T Consensus 342 l~dp~---~~~~e~~~~L~~ttFV~~V~~ps-----L-almvpiL~R---~l~eRst~--~k---------r~t~~IidN 398 (569)
T KOG1242|consen 342 LADPS---CYTPECLDSLGATTFVAEVDAPS-----L-ALMVPILKR---GLAERSTS--IK---------RKTAIIIDN 398 (569)
T ss_pred hcCcc---cchHHHHHhhcceeeeeeecchh-----H-HHHHHHHHH---HHhhccch--hh---------hhHHHHHHH
Confidence 21111 022222333332 222222211 2 445555543 22211110 00 011222333
Q ss_pred hhcccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhchhhhh-hHHHHHHH
Q 001789 656 MGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVT-LLPQVLDC 731 (1013)
Q Consensus 656 L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~k~~i~~~~~~~~~-~l~~l~~~ 731 (1013)
+.... . .+.-+.+++..++|-++..+.. . .+++.+-+-+.+...++-.|....+ .+|.+.+.
T Consensus 399 m~~Lv---e--------Dp~~lapfl~~Llp~lk~~~~d--~-~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~ 461 (569)
T KOG1242|consen 399 MCKLV---E--------DPKDLAPFLPSLLPGLKENLDD--A-VPEVRAVAARALGALLERLGEVSFDDLIPELSET 461 (569)
T ss_pred HHHhh---c--------CHHHHhhhHHHHhhHHHHHhcC--C-ChhHHHHHHHHHHHHHHHHHhhcccccccHHHHh
Confidence 32211 1 1122556788889999998752 3 7888887777777777766554333 34544443
No 50
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=75.53 E-value=3.6 Score=37.38 Aligned_cols=93 Identities=15% Similarity=0.030 Sum_probs=54.5
Q ss_pred CchhhhHHHHHHHhhhhcccccCCc----cchHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhchhchH
Q 001789 453 PWKEVETKLFALNVVSEVVLQEGQA----FDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNAR 528 (1013)
Q Consensus 453 ~W~~~Ea~L~~l~~iae~~~~~~~~----~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~~L~ 528 (1013)
+|...+.++++++.++...++.... ..++.+.+++. ++..+ ++..+ ++++++.+.......+.+.
T Consensus 20 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~----~~~~~------v~~~a-~~~L~~l~~~~~~~~~~~~ 88 (120)
T cd00020 20 DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK----SEDEE------VVKAA-LWALRNLAAGPEDNKLIVL 88 (120)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh----CCCHH------HHHHH-HHHHHHHccCcHHHHHHHH
Confidence 4899999999999998763321000 11333333332 22211 34434 4788877664432222221
Q ss_pred --HHHHHHHHhcCcC--chHHHHHHHHHHHHH
Q 001789 529 --PLLLFLAAGISEA--VSSNACASALRKICE 556 (1013)
Q Consensus 529 --~vl~~l~~~l~~~--~v~~~Aa~a~~~lc~ 556 (1013)
.+++.+.+.+.++ +++..|+.+|..||+
T Consensus 89 ~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 89 EAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 2567777777764 488999999998874
No 51
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=74.91 E-value=1.9e+02 Score=34.39 Aligned_cols=109 Identities=13% Similarity=-0.047 Sum_probs=63.8
Q ss_pred HHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhchhchHH-HHHHHHHhcCcC--chHHHHHHHHHHHHHH
Q 001789 481 SVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARP-LLLFLAAGISEA--VSSNACASALRKICED 557 (1013)
Q Consensus 481 ~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~~L~~-vl~~l~~~l~~~--~v~~~Aa~a~~~lc~~ 557 (1013)
+.+...+..+..++.+. ||.+++ ..+.+ .+...|+.++. .++.+.+.+.++ .|..+|..++..+ +
T Consensus 113 ~~l~~~v~~ll~~~~~~------VRk~A~-~~l~~---i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~ 180 (526)
T PF01602_consen 113 EPLIPDVIKLLSDPSPY------VRKKAA-LALLK---IYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--K 180 (526)
T ss_dssp HHHHHHHHHHHHSSSHH------HHHHHH-HHHHH---HHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--H
T ss_pred hHHHHHHHHHhcCCchH------HHHHHH-HHHHH---HhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--c
Confidence 55666666666566432 566554 44443 34557888877 688888888864 4888888888888 3
Q ss_pred hhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCC
Q 001789 558 ASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVS 603 (1013)
Q Consensus 558 c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~~p 603 (1013)
|...... ...+.+......+. ...++-.+..+++.+......-+
T Consensus 181 ~~~~~~~-~~~~~~~~~L~~~l-~~~~~~~q~~il~~l~~~~~~~~ 224 (526)
T PF01602_consen 181 CNDDSYK-SLIPKLIRILCQLL-SDPDPWLQIKILRLLRRYAPMEP 224 (526)
T ss_dssp CTHHHHT-THHHHHHHHHHHHH-TCCSHHHHHHHHHHHTTSTSSSH
T ss_pred cCcchhh-hhHHHHHHHhhhcc-cccchHHHHHHHHHHHhcccCCh
Confidence 3333211 13333333322211 34566777777777776654433
No 52
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=74.29 E-value=3.4 Score=31.77 Aligned_cols=54 Identities=13% Similarity=0.085 Sum_probs=35.1
Q ss_pred chhhhHHHHHHHhhhhcccccCCccchHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHh
Q 001789 454 WKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGS 515 (1013)
Q Consensus 454 W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ 515 (1013)
|+..++++++|+.+++...+.... .++.++..|..+..++.+. ||..+ ++.+|+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~------VR~~A-~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDS------VRAAA-AWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHH------HHHHH-HHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHH------HHHHH-HHHHhc
Confidence 777899999999988766543221 2456666665555555432 56655 588875
No 53
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=73.95 E-value=1.9e+02 Score=34.14 Aligned_cols=343 Identities=14% Similarity=0.168 Sum_probs=158.1
Q ss_pred HHHHHhhHHHHHhchhc-hHHHHHHHHHhcCcCc--hHHHHHHHHHHHHHHhhc---ccCCCccHHHHHHHHHHHHhcCC
Q 001789 510 ADVIGSYSKWISAFQTN-ARPLLLFLAAGISEAV--SSNACASALRKICEDASA---LIDEPSNLEILMWIGEALEKRHL 583 (1013)
Q Consensus 510 ~~~ig~y~~wl~~~p~~-L~~vl~~l~~~l~~~~--v~~~Aa~a~~~lc~~c~~---~l~~~~~~~~l~~~~~~l~~~~l 583 (1013)
+.++++.-. ...|.. ++...++|..++.+|. |+..|++++.++.+.-.. .+.....++.+..+.. .-
T Consensus 59 ~~iL~~~l~--~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~-----~~ 131 (503)
T PF10508_consen 59 CDILKRLLS--ALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLR-----DP 131 (503)
T ss_pred HHHHHHHHh--ccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHc-----CC
Confidence 456655444 224443 6788899999999865 899999998887643222 2221112233333221 11
Q ss_pred ChhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHH-HHHHHHhhhcccCCCCCCCCchhhHHHHHHHHHHHHhhhccccc
Q 001789 584 PLEDEEEVVGAISLILGSVSNKELKNNLLARLLSS-SYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSH 662 (1013)
Q Consensus 584 ~~~~~~~l~eai~~ii~~~p~~~~~~~~l~~ll~p-~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~ 662 (1013)
+.+.......++..+.+.-+ .++.++.+ ....+.+++...++ .. -++.+..+..+.+.
T Consensus 132 d~~Va~~A~~~L~~l~~~~~-------~~~~l~~~~~~~~L~~l~~~~~~-------~v-------R~Rv~el~v~i~~~ 190 (503)
T PF10508_consen 132 DLSVAKAAIKALKKLASHPE-------GLEQLFDSNLLSKLKSLMSQSSD-------IV-------RCRVYELLVEIASH 190 (503)
T ss_pred cHHHHHHHHHHHHHHhCCch-------hHHHHhCcchHHHHHHHHhccCH-------HH-------HHHHHHHHHHHHhc
Confidence 33344444555555544211 12233222 24555565554211 11 02334434433322
Q ss_pred ccccCCCCCCCCchHHHHHHHHHH--HHHHHHHhhhc-cchHHHHHHHHHHHHHHHHh-chhh---hhhHHHHHHHHHHh
Q 001789 663 LPVPLPTNPAGDDPIFALLRVFWP--MLEKLFRSEHM-ENGNLSTAACRALSLAIQSS-GQHF---VTLLPQVLDCLSTN 735 (1013)
Q Consensus 663 l~~~~~~~~~~~~p~~~~~~~i~~--~l~~i~~~~~~-~~~~v~e~~c~~~k~~i~~~-~~~~---~~~l~~l~~~l~~~ 735 (1013)
- + ..++.++. ++..++.. .. .|.-+...++.++.....+- |..+ ..+++.+.+.+...
T Consensus 191 S------------~--~~~~~~~~sgll~~ll~e-L~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~ 255 (503)
T PF10508_consen 191 S------------P--EAAEAVVNSGLLDLLLKE-LDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDS 255 (503)
T ss_pred C------------H--HHHHHHHhccHHHHHHHH-hcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhcc
Confidence 1 0 11222222 44444432 32 33333446666666554421 1110 12334444433321
Q ss_pred hhhcCCcchHHHHhHHHHHHhcCCCCc-chhHHHHHHHHhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHHhhH-HH
Q 001789 736 FVSFQNHECYIRTASVVIEEFGHKDEY-GPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRK-EV 813 (1013)
Q Consensus 736 f~~~~~~~~~L~l~s~li~~~g~~~~~-~~~i~~l~~~l~~~t~l~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~-~l 813 (1013)
. .+|....+++.+.+ .-||.-... .+.+...+..|.... +.++. ..+++.....|+-++.+-...-+ .+
T Consensus 256 -~-~dp~~~~~~l~g~~-~f~g~la~~~~~~v~~~~p~~~~~l-~~~~~-----s~d~~~~~~A~dtlg~igst~~G~~~ 326 (503)
T PF10508_consen 256 -E-EDPRLSSLLLPGRM-KFFGNLARVSPQEVLELYPAFLERL-FSMLE-----SQDPTIREVAFDTLGQIGSTVEGKQL 326 (503)
T ss_pred -c-cCCcccchhhhhHH-HHHHHHHhcChHHHHHHHHHHHHHH-HHHhC-----CCChhHHHHHHHHHHHHhCCHHHHHH
Confidence 1 12311223332222 333332111 122333444444443 33333 46677777777767666644322 22
Q ss_pred H-hcchhchHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhhhhhccCCCCCCCCcchHHHHHHHHHhhhHHHHHHHHHH
Q 001789 814 L-AASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYA 892 (1013)
Q Consensus 814 ~-~~~~~~l~~il~~~l~~l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lv~~ll~~ 892 (1013)
+ ...++.+..++..+....+..-.+....+++-+..++.... + .+..+.....+.++...|..=...++..
T Consensus 327 L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~-------~-~~~~~i~~~~~~w~~~~~~~~~~~~l~~ 398 (503)
T PF10508_consen 327 LLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGT-------D-RQDNDILSITESWYESLSGSPLSNLLMS 398 (503)
T ss_pred HHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCC-------C-CchHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 2 22235666677666656666666778888888888876431 1 1112334556667766665444435555
Q ss_pred hcCCCcccchhhhh-HHHHHHH
Q 001789 893 LLGVSAMSRVHKCA-TILQQLA 913 (1013)
Q Consensus 893 l~g~~~rs~~~~~~-~iL~~L~ 913 (1013)
+.. .|.+.+...+ .+|..++
T Consensus 399 ~~~-qPF~elr~a~~~~l~~l~ 419 (503)
T PF10508_consen 399 LLK-QPFPELRCAAYRLLQALA 419 (503)
T ss_pred Hhc-CCchHHHHHHHHHHHHHh
Confidence 443 4555555433 4444444
No 54
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.78 E-value=1.8e+02 Score=33.81 Aligned_cols=268 Identities=15% Similarity=0.166 Sum_probs=136.3
Q ss_pred HHHHHHhcC---cCchHHHHHHHHHHHHHHhhc---ccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCc
Q 001789 531 LLFLAAGIS---EAVSSNACASALRKICEDASA---LIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSN 604 (1013)
Q Consensus 531 l~~l~~~l~---~~~v~~~Aa~a~~~lc~~c~~---~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~~p~ 604 (1013)
++-++.++. +|.++-.||-|+.+||..-.. ..+.....|.|..+... -+.+.++.-+=|+|.|+.--|.
T Consensus 111 v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s-----~~~~v~eQavWALgNIagds~~ 185 (514)
T KOG0166|consen 111 VPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSS-----PSADVREQAVWALGNIAGDSPD 185 (514)
T ss_pred HHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcC-----CcHHHHHHHHHHHhccccCChH
Confidence 344444443 377899999999999964332 32222356776666542 2566788999999999987665
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHHHHHHHHHHhhhcccccccccCCCCCCCCchHHHHHHHH
Q 001789 605 KELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVF 684 (1013)
Q Consensus 605 ~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i 684 (1013)
-... -.-...+.|++..+. .. .+ ...+..+.. .|+.+.|+-+ ++|.....+.+
T Consensus 186 ~Rd~-vl~~g~l~pLl~~l~----~~-------~~---~~~lRn~tW---~LsNlcrgk~---------P~P~~~~v~~i 238 (514)
T KOG0166|consen 186 CRDY-VLSCGALDPLLRLLN----KS-------DK---LSMLRNATW---TLSNLCRGKN---------PSPPFDVVAPI 238 (514)
T ss_pred HHHH-HHhhcchHHHHHHhc----cc-------cc---hHHHHHHHH---HHHHHHcCCC---------CCCcHHHHHHH
Confidence 3321 111234444443322 11 11 011111222 2344555533 24556778889
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhchhhh-----hhHHHHHHHHHHhhhhcCCcchHHHHhHHHHHHhcCC
Q 001789 685 WPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFV-----TLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHK 759 (1013)
Q Consensus 685 ~~~l~~i~~~~~~~~~~v~e~~c~~~k~~i~~~~~~~~-----~~l~~l~~~l~~~f~~~~~~~~~L~l~s~li~~~g~~ 759 (1013)
+|++..++. ..|.+|..-+|-.+.....-..+.+. ..+|.+++.+.. .......| .|...+-++. |++
T Consensus 239 Lp~L~~ll~---~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~-~~~~v~~P-aLRaiGNIvt--G~d 311 (514)
T KOG0166|consen 239 LPALLRLLH---STDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGH-SSPKVVTP-ALRAIGNIVT--GSD 311 (514)
T ss_pred HHHHHHHHh---cCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcC-CCcccccH-HHhhccceee--ccH
Confidence 999998874 47888888788777765432222211 133444443321 11100112 2332222222 443
Q ss_pred CCcchhHHH-HHHHHhhHHHHHHhhcCCCCCCCCc-hHHHHHHHHHHHHHHhhHHHHhcchhchH-HHHHHHHHHhccCC
Q 001789 760 DEYGPLFVT-TFERFSQAASVRALNSSYICDQEPD-LVEAYTNFASTFVRTSRKEVLAASGALLE-VSFQKAAICCTAMH 836 (1013)
Q Consensus 760 ~~~~~~i~~-l~~~l~~~t~l~~l~~~~~~~~~pD-~~~~~f~l~~~~l~~~p~~l~~~~~~~l~-~il~~~l~~l~~~e 836 (1013)
......+.. .+. + +..+.+ .++.+ +.++..=.++.|..-++...-. +++ .+++..+..+...|
T Consensus 312 ~QTq~vi~~~~L~----~--l~~ll~----~s~~~~ikkEAcW~iSNItAG~~~qiqa----Vida~l~p~Li~~l~~~e 377 (514)
T KOG0166|consen 312 EQTQVVINSGALP----V--LSNLLS----SSPKESIKKEACWTISNITAGNQEQIQA----VIDANLIPVLINLLQTAE 377 (514)
T ss_pred HHHHHHHhcChHH----H--HHHHhc----cCcchhHHHHHHHHHHHhhcCCHHHHHH----HHHcccHHHHHHHHhccc
Confidence 211011100 111 1 222221 24444 5676777788877766644322 111 25556666777777
Q ss_pred hhHHHHHHHHHHHHH
Q 001789 837 RGAALAAMSYLSCFL 851 (1013)
Q Consensus 837 ~~~~~a~~~fl~~li 851 (1013)
....|.|+--.+++.
T Consensus 378 f~~rKEAawaIsN~t 392 (514)
T KOG0166|consen 378 FDIRKEAAWAISNLT 392 (514)
T ss_pred hHHHHHHHHHHHhhc
Confidence 777777765554443
No 55
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.26 E-value=1.8e+02 Score=33.58 Aligned_cols=46 Identities=11% Similarity=0.003 Sum_probs=36.3
Q ss_pred CCCCCchHHHHHHHHHHHHHHhhHHHHhcchhchHHHHHHHHHHhc
Q 001789 788 CDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCT 833 (1013)
Q Consensus 788 ~~~~pD~~~~~f~l~~~~l~~~p~~l~~~~~~~l~~il~~~l~~l~ 833 (1013)
.-.+|.+.-+||+++.=+..+.|..+-+.+......+.+|.-.+++
T Consensus 567 lLk~P~lc~~~~~lIty~ce~~pe~la~~~~~l~~sl~qc~~LGMT 612 (748)
T KOG4541|consen 567 LLKYPKLCFDDVDLITYMCERAPEALASYHYKLKNSLNQCSGLGMT 612 (748)
T ss_pred HHhchHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHhhccCCc
Confidence 3468999999999999999999999887765566666666555665
No 56
>PTZ00429 beta-adaptin; Provisional
Probab=72.94 E-value=2.5e+02 Score=34.91 Aligned_cols=96 Identities=8% Similarity=0.118 Sum_probs=49.5
Q ss_pred CCchhhhHHHHHHHhhhhcccccCCccchHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhchhchHHHH
Q 001789 452 IPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLL 531 (1013)
Q Consensus 452 ~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~~L~~vl 531 (1013)
..|..+ +.|..++...+.++.. ...++..+.....|.. .+|+..++ .++-.|.... +++.+..++
T Consensus 232 ~EW~Qi----~IL~lL~~y~P~~~~e--~~~il~~l~~~Lq~~N------~AVVl~Ai-k~il~l~~~~--~~~~~~~~~ 296 (746)
T PTZ00429 232 NEWGQL----YILELLAAQRPSDKES--AETLLTRVLPRMSHQN------PAVVMGAI-KVVANLASRC--SQELIERCT 296 (746)
T ss_pred ChHHHH----HHHHHHHhcCCCCcHH--HHHHHHHHHHHhcCCC------HHHHHHHH-HHHHHhcCcC--CHHHHHHHH
Confidence 468665 5666666655543321 2334443333333332 24666554 6666665432 244444433
Q ss_pred HHHH----Hhc-CcCchHHHHHHHHHHHHHHhhccc
Q 001789 532 LFLA----AGI-SEAVSSNACASALRKICEDASALI 562 (1013)
Q Consensus 532 ~~l~----~~l-~~~~v~~~Aa~a~~~lc~~c~~~l 562 (1013)
..+- .-+ .+|+++-.+-+.+..|.+.+...+
T Consensus 297 ~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf 332 (746)
T PTZ00429 297 VRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLL 332 (746)
T ss_pred HHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHH
Confidence 2221 112 246788888888888887766544
No 57
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=71.48 E-value=19 Score=35.33 Aligned_cols=80 Identities=20% Similarity=0.204 Sum_probs=59.6
Q ss_pred HHHhhccCCCCCCccchHHHHHHHHHHHHHhcC-CCCCChHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHchhc
Q 001789 45 ATSILTSDRQSFLTDFEVEFFAAQILKRKIQNE-GYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV 123 (1013)
Q Consensus 45 ~~~LL~~~~~~~~~~~~~~ffaa~tL~~kI~~~-w~~l~~e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~ 123 (1013)
...+|+++ +.+.|+.|+..++.-+... |.-+-... ...-+.++..+.+ .+++.++.-.|.+++.++....
T Consensus 30 i~~LL~s~------~~~~rw~G~~Ll~~~~~~~~~e~l~~~~-~~W~~~Ll~~L~~--~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 30 INSLLQSK------SAYSRWAGLCLLKVTVEQCSWEILLSHG-SQWLRALLSILEK--PDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHhCCC------ChhhHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHhc
Confidence 45677653 3688999999999999986 76664333 3444447777765 4567788888899999998888
Q ss_pred ccCchHHHHH
Q 001789 124 EHGKPIEKLF 133 (1013)
Q Consensus 124 ~W~~~i~~li 133 (1013)
+||+...++.
T Consensus 101 ~~p~l~Rei~ 110 (165)
T PF08167_consen 101 GKPTLTREIA 110 (165)
T ss_pred CCCchHHHHh
Confidence 9999887764
No 58
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.98 E-value=2.1e+02 Score=33.32 Aligned_cols=94 Identities=12% Similarity=-0.015 Sum_probs=71.7
Q ss_pred CCCCchHHHHHHHHHHHHHHhhHHHHhcchhchHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhhhhhccCCCCCCCCc
Q 001789 789 DQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEG 868 (1013)
Q Consensus 789 ~~~pD~~~~~f~l~~~~l~~~p~~l~~~~~~~l~~il~~~l~~l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~ 868 (1013)
.+++|..+++-+++..+.+.+.......| ..+-.+++..+..-.+++.+++.+.+.||..+=..... ++
T Consensus 258 ~~d~d~~~a~~RIFtel~eaf~~~i~~np-~~~l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~-----~~----- 326 (559)
T KOG2081|consen 258 GEDLDKNEAICRIFTELGEAFVVLISTNP-EEFLRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTL-----TD----- 326 (559)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHhhCC-CcchhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhc-----cc-----
Confidence 57899999999999999888877776665 34555676777777889999999999999987655422 11
Q ss_pred chHHHHHHHHHhhhHHHHHHHHHHhcC
Q 001789 869 SFNAMAIQVISHSGEGLVSNVVYALLG 895 (1013)
Q Consensus 869 ~~~~~~~~~~~~~g~~Lv~~ll~~l~g 895 (1013)
......++.+|...+|+.+..-+.-
T Consensus 327 --~~~~~~~frpy~~rLvs~l~~h~ql 351 (559)
T KOG2081|consen 327 --DDEALGIFRPYFLRLVSLLKRHVQL 351 (559)
T ss_pred --cHHHHHHhHHHHHHHHHHHHHHccC
Confidence 1345668889999999999988763
No 59
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.87 E-value=2.5e+02 Score=33.76 Aligned_cols=53 Identities=9% Similarity=0.118 Sum_probs=36.1
Q ss_pred HHhchhchHHHHHHHHHhcCcCc--hHHHHHHHHHHHHHHhhcccCCCccHHHHHHH
Q 001789 520 ISAFQTNARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWI 574 (1013)
Q Consensus 520 l~~~p~~L~~vl~~l~~~l~~~~--v~~~Aa~a~~~lc~~c~~~l~~~~~~~~l~~~ 574 (1013)
|-+.|+-|.++++.|.+.|.+|+ |+++|..-|=.++++-.+.... ..|.|..+
T Consensus 172 FLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~--LAP~ffkl 226 (877)
T KOG1059|consen 172 FLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ--LAPLFYKL 226 (877)
T ss_pred HHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc--ccHHHHHH
Confidence 34558899999999999999855 8888776666666555554332 44444443
No 60
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=69.82 E-value=1.2e+02 Score=34.37 Aligned_cols=201 Identities=18% Similarity=0.187 Sum_probs=108.2
Q ss_pred HHHHHHHHHhccC-chhhhhhHHHHHHHHHHHHHHhhHHHHHhchhchHHHHHHHHHhcCcCc---hHHHHHHHHHHHHH
Q 001789 481 SVIMQLVAVLSAS-RSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAV---SSNACASALRKICE 556 (1013)
Q Consensus 481 ~~i~~~l~~l~~~-~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~~L~~vl~~l~~~l~~~~---v~~~Aa~a~~~lc~ 556 (1013)
+.+-+.+..+..+ +...+.+-..-+. . |.+-|.++-|- ++...+|..+++-+++.+ .+..|-+-++++|+
T Consensus 286 ~~v~~~l~~~~g~e~a~~~k~alsel~-~-m~~e~sfsvWe----q~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~ 359 (516)
T KOG2956|consen 286 ALVADLLKEISGSERASERKEALSELP-K-MLCEGSFSVWE----QHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLT 359 (516)
T ss_pred HHHHHHHHhccCccchhHHHHHHHHHH-H-HHHccchhHHH----HHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHH
Confidence 4556677777655 2221111000011 1 34667777774 456677777777778732 56667777777776
Q ss_pred HhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q 001789 557 DASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLI 636 (1013)
Q Consensus 557 ~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~ 636 (1013)
.=...+.. +..-.+..+.+.-. +-..+....--|....+++...+..+. ..+.|++.. +
T Consensus 360 ~Q~~~l~D-stE~ai~K~Leaa~--ds~~~v~~~Aeed~~~~las~~P~~~I-----~~i~~~Ilt-------~------ 418 (516)
T KOG2956|consen 360 NQPARLFD-STEIAICKVLEAAK--DSQDEVMRVAEEDCLTTLASHLPLQCI-----VNISPLILT-------A------ 418 (516)
T ss_pred hchHhhhc-hHHHHHHHHHHHHh--CCchhHHHHHHHHHHHHHHhhCchhHH-----HHHhhHHhc-------C------
Confidence 65555543 23334444444321 112222333334444444443322222 122232211 1
Q ss_pred CCchhhHHHHHHHHHHHHhhhcccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 001789 637 HNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQS 716 (1013)
Q Consensus 637 ~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~k~~i~~ 716 (1013)
.+| .+..+++++..+|..+.. +....++..+.|.+-+.+.. .++.|...+..|+-.++..
T Consensus 419 D~~--------~~~~~iKm~Tkl~e~l~~---------EeL~~ll~diaP~~iqay~S---~SS~VRKtaVfCLVamv~~ 478 (516)
T KOG2956|consen 419 DEP--------RAVAVIKMLTKLFERLSA---------EELLNLLPDIAPCVIQAYDS---TSSTVRKTAVFCLVAMVNR 478 (516)
T ss_pred cch--------HHHHHHHHHHHHHhhcCH---------HHHHHhhhhhhhHHHHHhcC---chHHhhhhHHHhHHHHHHH
Confidence 011 234568888888887653 23555667777877776543 4566777888888888888
Q ss_pred hc-hhhhhhHHHH
Q 001789 717 SG-QHFVTLLPQV 728 (1013)
Q Consensus 717 ~~-~~~~~~l~~l 728 (1013)
+| ..+.|.|.++
T Consensus 479 vG~~~mePhL~~L 491 (516)
T KOG2956|consen 479 VGMEEMEPHLEQL 491 (516)
T ss_pred HhHHhhhhHhhhc
Confidence 88 6777766543
No 61
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=68.32 E-value=1.4e+02 Score=32.34 Aligned_cols=76 Identities=14% Similarity=0.166 Sum_probs=59.0
Q ss_pred hchHHHHHHHHHhcCcCc-hHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCC
Q 001789 525 TNARPLLLFLAAGISEAV-SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVS 603 (1013)
Q Consensus 525 ~~L~~vl~~l~~~l~~~~-v~~~Aa~a~~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~~p 603 (1013)
...-.+|..|+.++.+|. ++-.--.++..+|.+|+.... ..+.+.++-.-+.+-.++.+++..++.++..++..-.
T Consensus 103 ~l~L~vLsnLfn~~d~~~~aR~~Vy~~lv~la~~~~~~~~---i~~~lk~~~~~lkew~~~vedqrel~r~v~~al~~~k 179 (378)
T KOG2753|consen 103 SLRLQVLSNLFNGVDKPTPARYQVYMSLVTLAASCKLIEY---IVPNLKQLDDWLKEWNISVEDQRELLRAVHKALKDNK 179 (378)
T ss_pred ccHHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcceeee---ecccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcc
Confidence 344567888889998877 888899999999999997543 3445555555555678899999999999999986544
No 62
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.28 E-value=1.2e+02 Score=36.84 Aligned_cols=193 Identities=11% Similarity=0.104 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHhchhhhhhHHHHHHHHHH---hhhhcCCcch---HH-HHhHHHHHHhcCCC-CcchhHHH-HHHHHh
Q 001789 704 TAACRALSLAIQSSGQHFVTLLPQVLDCLST---NFVSFQNHEC---YI-RTASVVIEEFGHKD-EYGPLFVT-TFERFS 774 (1013)
Q Consensus 704 e~~c~~~k~~i~~~~~~~~~~l~~l~~~l~~---~f~~~~~~~~---~L-~l~s~li~~~g~~~-~~~~~i~~-l~~~l~ 774 (1013)
|-+.+++-|++..+.....|+.|.++..+.+ ...+++..|- || ...+.++..-++.. ...+.+.. ++-.
T Consensus 566 eylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~-- 643 (960)
T KOG1992|consen 566 EYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPV-- 643 (960)
T ss_pred HHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHH--
Confidence 4566666666666666555555555444443 2223322222 33 35666776665532 22233322 2221
Q ss_pred hHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHHhhHHHHhcchhchHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhh
Q 001789 775 QAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEEC 854 (1013)
Q Consensus 775 ~~t~l~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~l~~~~~~~l~~il~~~l~~l~~~e~~~~~a~~~fl~~li~~~ 854 (1013)
++.+.+ .+-.|.+-.-|.+++.++..+-..+-.+..++++.++.=.+|.-+..-+ +....+..|+..+
T Consensus 644 ----fq~Il~----eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNip----alvrLl~aflk~g 711 (960)
T KOG1992|consen 644 ----FQTILS----EDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIP----ALVRLLQAFLKTG 711 (960)
T ss_pred ----HHHHHH----HHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCcH----HHHHHHHHHHhcC
Confidence 122221 2335666677888888888875522111124555555555666665544 3445556666554
Q ss_pred hhhccCCCCCCCCcchHHHHHHHHH-----hhhHHHHHHHHHHhcCCCcccchhhhhHHHHHHHHHh
Q 001789 855 LASLLGYTTSIPEGSFNAMAIQVIS-----HSGEGLVSNVVYALLGVSAMSRVHKCATILQQLAAIC 916 (1013)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~Lv~~ll~~l~g~~~rs~~~~~~~iL~~L~~~~ 916 (1013)
..... ..+ .-+......+.++. +||..|+..++..+- |-...++...|+..|..+.
T Consensus 712 ~~~~~-~~~--~l~~iLGifqkLiaSka~Dh~GF~LLn~i~~~~~---~~~~~py~k~i~~llf~Rl 772 (960)
T KOG1992|consen 712 SQIVE-AAD--KLSGILGIFQKLIASKANDHHGFYLLNTIIESIP---PNELAPYMKQIFGLLFQRL 772 (960)
T ss_pred chhhc-ccc--cchhHHHHHHHHhcCcccchhHHHHHHHHHhcCC---HhhhhHHHHHHHHHHHHHH
Confidence 32110 000 01223456666665 899999998888763 3344456667777777654
No 63
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=65.61 E-value=1.5e+02 Score=36.34 Aligned_cols=153 Identities=14% Similarity=0.105 Sum_probs=78.5
Q ss_pred hHHHHHHHHHhcCcCchHHHHHHHHHHHHHHhhcccCC---CccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCC
Q 001789 527 ARPLLLFLAAGISEAVSSNACASALRKICEDASALIDE---PSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVS 603 (1013)
Q Consensus 527 L~~vl~~l~~~l~~~~v~~~Aa~a~~~lc~~c~~~l~~---~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~~p 603 (1013)
+-++|-.|++.=+++++...||+|+.++|+-|...... -..+|.|..-...+ ..+ +.-+...+++-.|-+.=|
T Consensus 212 lvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~I--eyi--DvAEQ~LqALE~iSR~H~ 287 (1051)
T KOG0168|consen 212 LVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTI--EYI--DVAEQSLQALEKISRRHP 287 (1051)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhh--hhh--HHHHHHHHHHHHHHhhcc
Confidence 34444455554456789999999999999999874321 12456555433221 111 223444555555444333
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHHHHHHHHHHhhhcccccccccCCCCCCCCchHHHHHHH
Q 001789 604 NKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRV 683 (1013)
Q Consensus 604 ~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~ 683 (1013)
..--+...|...+. .++-+....+. .+ |...+++-+.+.+ ...|++. .
T Consensus 288 ~AiL~AG~l~a~Ls-ylDFFSi~aQR------------------~A---laiaaN~Cksi~s------d~f~~v~----e 335 (1051)
T KOG0168|consen 288 KAILQAGALSAVLS-YLDFFSIHAQR------------------VA---LAIAANCCKSIRS------DEFHFVM----E 335 (1051)
T ss_pred HHHHhcccHHHHHH-HHHHHHHHHHH------------------HH---HHHHHHHHhcCCC------ccchHHH----H
Confidence 22111111211111 11111110000 00 1111233333332 1234443 6
Q ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhc
Q 001789 684 FWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSG 718 (1013)
Q Consensus 684 i~~~l~~i~~~~~~~~~~v~e~~c~~~k~~i~~~~ 718 (1013)
.+|++..++.. +|...+|..|-++-+++..+.
T Consensus 336 alPlL~~lLs~---~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 336 ALPLLTPLLSY---QDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred HHHHHHHHHhh---ccchhHHHHHHHHHHHHHhcc
Confidence 67999999874 678899999999999988763
No 64
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=62.96 E-value=41 Score=28.43 Aligned_cols=55 Identities=22% Similarity=0.207 Sum_probs=43.5
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchHHHHHHHHHH
Q 001789 10 AQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILK 71 (1013)
Q Consensus 10 ~~av~~ly~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaa~tL~ 71 (1013)
...++.|-+++++..|..|-..|.++. ++++-.....++.++ +..+|..|+.+|.
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~-~~~~~~~L~~~l~d~------~~~vr~~a~~aL~ 56 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG-DPEAIPALIELLKDE------DPMVRRAAARALG 56 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT-HHHHHHHHHHHHTSS------SHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHcCC------CHHHHHHHHHHHH
Confidence 344555546789999999999999875 678888888888553 4699999999997
No 65
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=61.23 E-value=1.6e+02 Score=31.26 Aligned_cols=199 Identities=16% Similarity=0.175 Sum_probs=98.1
Q ss_pred hchHHHHHHHHHhcCcCchHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCc
Q 001789 525 TNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSN 604 (1013)
Q Consensus 525 ~~L~~vl~~l~~~l~~~~v~~~Aa~a~~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~~p~ 604 (1013)
+-....++|+.+.+.+......|.+++..+. +++..-. ......+..+.+...-+.....+|..+++-+-.+++.-.
T Consensus 38 ~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~-~~~~~~~-~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~- 114 (262)
T PF14500_consen 38 QEVQVLLDFFCSRLDDHACVQPALKGLLALV-KMKNFSP-ESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHR- 114 (262)
T ss_pred HHHHHHHHHHHHHhccHhhHHHHHHHHHHHH-hCcCCCh-hhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhH-
Confidence 4456677888888887766666688888888 4443211 112223333333333345567788888888888876532
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHHHHHHHHHHhhhcccccccccCCCCCCCCchHHHHHHHH
Q 001789 605 KELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVF 684 (1013)
Q Consensus 605 ~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i 684 (1013)
..+..+-...+..+-++++.. .+|.-. ..+.+.+..+. +. ++ .....+.+
T Consensus 115 -----~~l~~~~~~fv~~~i~~~~gE------kDPRnL----l~~F~l~~~i~---~~----~~--------~~~~~e~l 164 (262)
T PF14500_consen 115 -----EALQSMGDDFVYGFIQLIDGE------KDPRNL----LLSFKLLKVIL---QE----FD--------ISEFAEDL 164 (262)
T ss_pred -----HHHHhchhHHHHHHHHHhccC------CCHHHH----HHHHHHHHHHH---Hh----cc--------cchhHHHH
Confidence 222333334444444555443 344321 11222222221 11 11 01223344
Q ss_pred HHHHHHHHHh---hhccch--HHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHhhhhcCCcchHHHHhHHHHHHhcC
Q 001789 685 WPMLEKLFRS---EHMENG--NLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGH 758 (1013)
Q Consensus 685 ~~~l~~i~~~---~~~~~~--~v~e~~c~~~k~~i~~~~~~~~~~l~~l~~~l~~~f~~~~~~~~~L~l~s~li~~~g~ 758 (1013)
+.++...+.- +-++|+ ...|.+-+.++.++.+-.......+|.+++.+.+.... --...|.++..++..||.
T Consensus 165 Fd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~--~K~D~L~tL~~c~~~y~~ 241 (262)
T PF14500_consen 165 FDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPS--VKLDSLQTLKACIENYGA 241 (262)
T ss_pred HHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHHHHCCH
Confidence 4444443311 112333 23355555555555543222223466666666543211 123357788888899985
No 66
>PTZ00429 beta-adaptin; Provisional
Probab=58.65 E-value=4.5e+02 Score=32.73 Aligned_cols=127 Identities=12% Similarity=0.083 Sum_probs=78.1
Q ss_pred ccCCChHHHHHHHHHHHHHhc-ChH-HHHHHHHhhccCCCCCCccchHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 001789 17 NHDTESCNRVAANQWLVQFQQ-TDA-AWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALL 94 (1013)
Q Consensus 17 y~~~d~~~~~~A~~~L~~fq~-s~~-aW~~~~~LL~~~~~~~~~~~~~~ffaa~tL~~kI~~~w~~l~~e~~~~lr~~Ll 94 (1013)
..++|.+.|+-..-||..+-+ .|+ +-..+..+...-. +.++.+|=.|..||-. |+ .++ +-+.++
T Consensus 77 ~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~---d~Np~IRaLALRtLs~-Ir------~~~----i~e~l~ 142 (746)
T PTZ00429 77 APSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTT---NSSPVVRALAVRTMMC-IR------VSS----VLEYTL 142 (746)
T ss_pred hCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHc-CC------cHH----HHHHHH
Confidence 346688889999999988766 565 5555555554333 3456788888777753 21 122 333344
Q ss_pred HHHHHhc-CCCHHHHHHHHHHHHHHHchhcc---cCchHHHHHHHhhcccCCCcchHHHHHHHhhchhc
Q 001789 95 VAAKRFS-SGPPQLLTQICLALSALILRAVE---HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEE 159 (1013)
Q Consensus 95 ~~l~~~~-~~~~~v~~kL~~~La~l~~~~~~---W~~~i~~li~~l~~~~~~~~~~~~~L~iL~~l~EE 159 (1013)
..+.+.. ..++.||++-+.++.-++...++ =.++++.+...+... ++....+.+..|..+.++
T Consensus 143 ~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~--dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 143 EPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDN--NPVVASNAAAIVCEVNDY 209 (746)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCC--CccHHHHHHHHHHHHHHh
Confidence 4443322 45689999999999998766542 234566666666542 455556666666666553
No 67
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=57.14 E-value=1.5e+02 Score=29.37 Aligned_cols=55 Identities=15% Similarity=0.062 Sum_probs=42.5
Q ss_pred CCchHHHHHHHHHHHHHHhhHHHHhcchhchHHHHHHHHHHhccCChhHHHHHHHHHHHHHhh
Q 001789 791 EPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEE 853 (1013)
Q Consensus 791 ~pD~~~~~f~l~~~~l~~~p~~l~~~~~~~l~~il~~~l~~l~~~e~~~~~a~~~fl~~li~~ 853 (1013)
||.++......++.+..++|..+- ++.+ ....++..+++.+-+.|+..++.++..
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve----~~~~----~l~~~L~D~~~~VR~~al~~Ls~Li~~ 55 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE----PYLP----NLYKCLRDEDPLVRKTALLVLSHLILE 55 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH----hHHH----HHHHHHCCCCHHHHHHHHHHHHHHHHc
Confidence 577888888888888888887653 2344 444578888899999999999998865
No 68
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=56.53 E-value=26 Score=29.70 Aligned_cols=57 Identities=26% Similarity=0.170 Sum_probs=44.0
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchHHHHHHHHH
Q 001789 8 KVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQIL 70 (1013)
Q Consensus 8 ~v~~av~~ly~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaa~tL 70 (1013)
++...+..+..++|+..|.+|-..|.++. +++++.....++.+++ +..+|.-|+..|
T Consensus 31 ~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-~~~~~~~L~~~l~~~~-----~~~vr~~a~~aL 87 (88)
T PF13646_consen 31 EAIPALIELLKDEDPMVRRAAARALGRIG-DPEAIPALIKLLQDDD-----DEVVREAAAEAL 87 (88)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHCCH-HHHTHHHHHHHHTC-S-----SHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHcCCC-----cHHHHHHHHhhc
Confidence 44555555557889999999999999996 6999999999997753 356788887765
No 69
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.20 E-value=3.9e+02 Score=31.29 Aligned_cols=344 Identities=12% Similarity=0.140 Sum_probs=162.7
Q ss_pred HHHhcCcCc--hHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHh-cCC--ChhhHHHHHHHHHHHHccCCcHHHH
Q 001789 534 LAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEK-RHL--PLEDEEEVVGAISLILGSVSNKELK 608 (1013)
Q Consensus 534 l~~~l~~~~--v~~~Aa~a~~~lc~~c~~~l~~~~~~~~l~~~~~~l~~-~~l--~~~~~~~l~eai~~ii~~~p~~~~~ 608 (1013)
+.+++.|+- =+.+||.-+.++.++|-..= ..+.+-.+++.+.+ ... ....+..-.=|++.+.-++..+.
T Consensus 5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~----~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~-- 78 (675)
T KOG0212|consen 5 IARGLTDKLYEKRKAAALELEKLVKDLVNNN----DYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKD-- 78 (675)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHccC----cHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhcccc--
Confidence 345666543 36778888999998876532 45566666665532 111 12223334445566655666655
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHHHHHHHHHHhhhcccccccccCCCCCCCCchHHHHHHHHHHHH
Q 001789 609 NNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPML 688 (1013)
Q Consensus 609 ~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l 688 (1013)
..|++.++.|++.-+..-.. + ..+ -++..+..++.+.|+- +..+++.++-++
T Consensus 79 ~~Y~~~iv~Pv~~cf~D~d~-------~---vRy-----yACEsLYNiaKv~k~~-------------v~~~Fn~iFdvL 130 (675)
T KOG0212|consen 79 AGYLEKIVPPVLNCFSDQDS-------Q---VRY-----YACESLYNIAKVAKGE-------------VLVYFNEIFDVL 130 (675)
T ss_pred HHHHHHhhHHHHHhccCccc-------e---eee-----HhHHHHHHHHHHhccC-------------cccchHHHHHHH
Confidence 23899999998865442111 1 111 2466676666665552 223455555555
Q ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHh-hhhcCCcchHHHHhHHHHHHhcCCC-CcchhH
Q 001789 689 EKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTN-FVSFQNHECYIRTASVVIEEFGHKD-EYGPLF 766 (1013)
Q Consensus 689 ~~i~~~~~~~~~~v~e~~c~~~k~~i~~~~~~~~~~l~~l~~~l~~~-f~~~~~~~~~L~l~s~li~~~g~~~-~~~~~i 766 (1013)
-.+....-++.-.-.|-.=+++|.++.+-.. ..-++.++..+... |..+ | ..=.++.+++-.-....+ ++...+
T Consensus 131 ~klsaDsd~~V~~~aeLLdRLikdIVte~~~--tFsL~~~ipLL~eriy~~n-~-~tR~flv~Wl~~Lds~P~~~m~~yl 206 (675)
T KOG0212|consen 131 CKLSADSDQNVRGGAELLDRLIKDIVTESAS--TFSLPEFIPLLRERIYVIN-P-MTRQFLVSWLYVLDSVPDLEMISYL 206 (675)
T ss_pred HHHhcCCccccccHHHHHHHHHHHhcccccc--ccCHHHHHHHHHHHHhcCC-c-hHHHHHHHHHHHHhcCCcHHHHhcc
Confidence 5554321111112235556666666654332 11234444444333 2221 2 112334444433222111 111111
Q ss_pred HHHHHHHhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHHhhHHHHhcchh-chHHHHHHHHHHhccCChhHHHHHHH
Q 001789 767 VTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGA-LLEVSFQKAAICCTAMHRGAALAAMS 845 (1013)
Q Consensus 767 ~~l~~~l~~~t~l~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~l~~~~~~-~l~~il~~~l~~l~~~e~~~~~a~~~ 845 (1013)
..++. .- |.++. ++++|++.-.=..++.+++. +-++|+. ....+++..+..+...|++....|+.
T Consensus 207 ~~~ld----GL-f~~Ls-----D~s~eVr~~~~t~l~~fL~e----I~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~ 272 (675)
T KOG0212|consen 207 PSLLD----GL-FNMLS-----DSSDEVRTLTDTLLSEFLAE----IRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALT 272 (675)
T ss_pred hHHHH----HH-HHHhc-----CCcHHHHHHHHHHHHHHHHH----HhcCccccCcccchhhccccccCCcHHHHHHHHH
Confidence 11222 11 22232 45666664333333333321 1122211 22335555556777888999888888
Q ss_pred HHHHHHhhhhhhccCCCCCCCCcchHHHHHHHH----------HhhhHHHHHHHHHHhcCCCcccc--hh--hhhHHHHH
Q 001789 846 YLSCFLEECLASLLGYTTSIPEGSFNAMAIQVI----------SHSGEGLVSNVVYALLGVSAMSR--VH--KCATILQQ 911 (1013)
Q Consensus 846 fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~g~~Lv~~ll~~l~g~~~rs~--~~--~~~~iL~~ 911 (1013)
++.+|+........ + .....+...+ .....+.++..+..+.+. ++.. ++ ...++|.+
T Consensus 273 Wi~efV~i~g~~~l------~--~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~-~~~~~~id~~~ii~vl~~ 343 (675)
T KOG0212|consen 273 WIQEFVKIPGRDLL------L--YLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSS-ERLKEEIDYGSIIEVLTK 343 (675)
T ss_pred HHHHHhcCCCcchh------h--hhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhh-hhhccccchHHHHHHHHH
Confidence 88888865421000 0 0001011110 012334455555555542 3333 33 44455555
Q ss_pred HHHHhchhcccchhcccCHHHHHHHHHHHhccCCcc
Q 001789 912 LAAICSISERTSGKAILSWESLQGWLHSAVQVLPAE 947 (1013)
Q Consensus 912 L~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~p~~ 947 (1013)
... ......+..+-+|+......+|++
T Consensus 344 ~l~---------~~~~~tri~~L~Wi~~l~~~~p~q 370 (675)
T KOG0212|consen 344 YLS---------DDREETRIAVLNWIILLYHKAPGQ 370 (675)
T ss_pred Hhh---------cchHHHHHHHHHHHHHHHhhCcch
Confidence 542 112344466789998877788875
No 70
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=52.88 E-value=3.6e+02 Score=29.84 Aligned_cols=86 Identities=14% Similarity=0.142 Sum_probs=52.8
Q ss_pred CCCchHHHHHHHHHHHHHHhhHHHHhcchhchHHHHHHHHHHh----cc----CC---------hhHHHHHHHHHHHHHh
Q 001789 790 QEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICC----TA----MH---------RGAALAAMSYLSCFLE 852 (1013)
Q Consensus 790 ~~pD~~~~~f~l~~~~l~~~p~~l~~~~~~~l~~il~~~l~~l----~~----~e---------~~~~~a~~~fl~~li~ 852 (1013)
..+.++...++|+..++.+....+... ++. -|++...++ .. .+ +.+-....+||..|+.
T Consensus 68 ~~~~~~~~~LrLL~~iv~f~~g~~a~~---v~~-~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~ 143 (330)
T PF11707_consen 68 SKPSLTNPALRLLTAIVSFDGGALARE---VLR-SFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLS 143 (330)
T ss_pred CcHHHHHHHHHHHHHHHccCCHHHHHH---HHH-hcCCchhhHHHHhccccccccccccccccCcCHHHHHHHHHHHHHc
Confidence 337888899999999999554333321 111 112222111 10 11 1555677899999997
Q ss_pred hhhhhccCCCCCCCCcchHHHHHHHHHhhhHHHHHHHHHHhcCC
Q 001789 853 ECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGV 896 (1013)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lv~~ll~~l~g~ 896 (1013)
... .....+++.+++. +..+++++..+
T Consensus 144 ~~~---------------~~~~~~lL~~~~~--~~~l~k~l~~D 170 (330)
T PF11707_consen 144 SGD---------------PELKRDLLSQKKL--MSALFKGLRKD 170 (330)
T ss_pred cCC---------------HHHHHHHHHcCch--HHHHHhcccCC
Confidence 641 1567778877766 89999998874
No 71
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=52.64 E-value=4.1e+02 Score=30.44 Aligned_cols=79 Identities=15% Similarity=0.186 Sum_probs=53.4
Q ss_pred CchHHHHHHHHHHHHHHhhHHHHhcchhchHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhhhhhccCCCCCCCCcchH
Q 001789 792 PDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFN 871 (1013)
Q Consensus 792 pD~~~~~f~l~~~~l~~~p~~l~~~~~~~l~~il~~~l~~l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~~ 871 (1013)
+-=-.-|++.+..++...|..-+. .....++.....|+..+|..++..|+.||.+
T Consensus 269 s~Kev~FL~el~~il~~~~~~~f~---~i~~~lf~~la~ci~S~h~qVAErAl~~w~n---------------------- 323 (409)
T PF01603_consen 269 SQKEVLFLNELEEILEVLPPEEFQ---KIMVPLFKRLAKCISSPHFQVAERALYFWNN---------------------- 323 (409)
T ss_dssp HHHHHHHHHHHHHHHTT--HHHHH---HHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS----------------------
T ss_pred chhHHHHHHHHHHHHHhcCHHHHH---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC----------------------
Confidence 333444777777888776654443 3566678888889999999999999988743
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhcC
Q 001789 872 AMAIQVISHSGEGLVSNVVYALLG 895 (1013)
Q Consensus 872 ~~~~~~~~~~g~~Lv~~ll~~l~g 895 (1013)
+.+-.++.++...++..++.++-.
T Consensus 324 ~~~~~li~~~~~~i~p~i~~~L~~ 347 (409)
T PF01603_consen 324 EYFLSLISQNSRVILPIIFPALYR 347 (409)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhChHHHHHHHHHHHHH
Confidence 334556666777777777777654
No 72
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=51.10 E-value=1.4e+02 Score=26.74 Aligned_cols=89 Identities=9% Similarity=0.097 Sum_probs=60.4
Q ss_pred HHHHHHHHhcCc---C---chHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccC
Q 001789 529 PLLLFLAAGISE---A---VSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSV 602 (1013)
Q Consensus 529 ~vl~~l~~~l~~---~---~v~~~Aa~a~~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~~ 602 (1013)
.+++++-..+++ . .-+.+|-+++..+.+-|++.+.. ..|.+..+...... .++-+..-+++-...+..+
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~--~~pQI~a~L~sal~---~~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISS--ARPQIMACLQSALE---IPELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHHHhC---ChhhHHHHHHHHHHHHHHC
Confidence 344445444544 1 15788999999999999998753 78888877765322 1256777889999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHH
Q 001789 603 SNKELKNNLLARLLSSSYEAI 623 (1013)
Q Consensus 603 p~~~~~~~~l~~ll~p~~~~l 623 (1013)
++++ ....+.+....++..|
T Consensus 86 ~~~~-l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 86 DEED-LGPLLDQIFAILLPLW 105 (107)
T ss_pred CHHH-HHHHHHHHHHHHHHhc
Confidence 9766 5666666655544433
No 73
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.03 E-value=5.7e+02 Score=31.38 Aligned_cols=48 Identities=17% Similarity=0.161 Sum_probs=30.6
Q ss_pred HHHHHhhHHHHHhc----------hhchHHHHHHHH-HhcCcCchHHHHHHHHHHHHHH
Q 001789 510 ADVIGSYSKWISAF----------QTNARPLLLFLA-AGISEAVSSNACASALRKICED 557 (1013)
Q Consensus 510 ~~~ig~y~~wl~~~----------p~~L~~vl~~l~-~~l~~~~v~~~Aa~a~~~lc~~ 557 (1013)
.|+||.|.+++-.+ ++.+-.++..++ ....+......|-.|+.||...
T Consensus 487 ~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr 545 (866)
T KOG1062|consen 487 SWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSR 545 (866)
T ss_pred HHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence 59999999988763 233333333333 2333445778888888888754
No 74
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.21 E-value=4.3e+02 Score=32.64 Aligned_cols=177 Identities=13% Similarity=0.063 Sum_probs=100.4
Q ss_pred HHHhhHHHHHh--chh--chHHHHHHHHHhcCcCc--hHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCCh
Q 001789 512 VIGSYSKWISA--FQT--NARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPL 585 (1013)
Q Consensus 512 ~ig~y~~wl~~--~p~--~L~~vl~~l~~~l~~~~--v~~~Aa~a~~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~ 585 (1013)
-+....+|++. +.. +...++......+.|.+ +-..|-+++..+|+--.+. .+|.+.+-|.+- +.....
T Consensus 747 gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~-----il~dL~e~Y~s~-k~k~~~ 820 (982)
T KOG4653|consen 747 GLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPED-----ILPDLSEEYLSE-KKKLQT 820 (982)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchh-----hHHHHHHHHHhc-ccCCCc
Confidence 34445678873 322 55678888888888754 7888999999999873332 466777777653 334457
Q ss_pred hhHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHHHHHHHHHHhhhcccccccc
Q 001789 586 EDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPV 665 (1013)
Q Consensus 586 ~~~~~l~eai~~ii~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~ 665 (1013)
+.+.+|=|+++.++++.++- ...|.. ++++.....+.. |+.... .+++..+..+..+.+...+
T Consensus 821 d~~lkVGEai~k~~qa~Gel--~~~y~~----~Li~tfl~gvre---------pd~~~R--aSS~a~lg~Lcq~~a~~vs 883 (982)
T KOG4653|consen 821 DYRLKVGEAILKVAQALGEL--VFKYKA----VLINTFLSGVRE---------PDHEFR--ASSLANLGQLCQLLAFQVS 883 (982)
T ss_pred cceehHHHHHHHHHHHhccH--HHHHHH----HHHHHHHHhcCC---------chHHHH--HhHHHHHHHHHHHHhhhhh
Confidence 88999999999999987642 233333 444443333331 111000 0222223322222221111
Q ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhchhhhhhHH
Q 001789 666 PLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLP 726 (1013)
Q Consensus 666 ~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~k~~i~~~~~~~~~~l~ 726 (1013)
+ .+-++...+..+.. -.+..-+.-++..++...++..|..+.|++.
T Consensus 884 ---------d----~~~ev~~~Il~l~~--~d~s~~vRRaAv~li~~lL~~tg~dlLpilr 929 (982)
T KOG4653|consen 884 ---------D----FFHEVLQLILSLET--TDGSVLVRRAAVHLLAELLNGTGEDLLPILR 929 (982)
T ss_pred ---------H----HHHHHHHHHHHHHc--cCCchhhHHHHHHHHHHHHhccchhhHHHHH
Confidence 1 22233333333322 2234455678888888888888877766553
No 75
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.83 E-value=5.7e+02 Score=31.01 Aligned_cols=214 Identities=16% Similarity=0.158 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHchhc-ccCchHHHHHHHhhcccCCCcchHHHHHHHhhchhcccc
Q 001789 84 AAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV-EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVID 162 (1013)
Q Consensus 84 e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~-~W~~~i~~li~~l~~~~~~~~~~~~~L~iL~~l~EE~~~ 162 (1013)
+-...|-+-++.++. ..-++||.|--..|=-++++++ .-...++.+.+.+... ++....+.. .+++|=.-
T Consensus 140 dLARDLa~Dv~tLL~---sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDp--Dp~V~SAAV---~VICELAr- 210 (877)
T KOG1059|consen 140 DLARDLADDVFTLLN---SSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDP--DPSVVSAAV---SVICELAR- 210 (877)
T ss_pred hhhHHHHHHHHHHHh---cCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCC--CchHHHHHH---HHHHHHHh-
Confidence 344555666666654 2346888888877878888877 3456677777777653 343333333 34444331
Q ss_pred ccccccCCChHHHHHHHHHHHhhhhHHHHHHHHhhhhccCCCCCcchhhhHHHHHHHHHHHHhcccccccCcchhcccch
Q 001789 163 SQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPL 242 (1013)
Q Consensus 163 ~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~L~cl~sWi~~~~~~~~~~~~~~~~~l 242 (1013)
+-+ +....-+|..+.++.+.-. .=+..+.++-|.+-.++.++ .. -.+
T Consensus 211 --KnP------------knyL~LAP~ffkllttSsN-----------NWmLIKiiKLF~aLtplEPR--Lg------KKL 257 (877)
T KOG1059|consen 211 --KNP------------QNYLQLAPLFYKLLVTSSN-----------NWVLIKLLKLFAALTPLEPR--LG------KKL 257 (877)
T ss_pred --hCC------------cccccccHHHHHHHhccCC-----------CeehHHHHHHHhhccccCch--hh------hhh
Confidence 111 0122345666666654211 12667888888887776542 11 123
Q ss_pred HHHHHHhccCCCcHHHHHHHHHHHhhcCC-----Ch---hHHHHhhhhhhHHhhhcccccCCcHHHHhHHHHHHHHHHHh
Q 001789 243 LNFVFNSLQVQSSFDVAIEVLVELVGRHE-----GL---PQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQA 314 (1013)
Q Consensus 243 l~~l~~~L~~~~~~~~a~~~l~eil~~~~-----~~---~~~l~~~~~~l~~~~~~~~~~~~d~~~~~~l~~l~~~~~e~ 314 (1013)
++.+.+.+.+...-...-+|+..++...+ +- .+.-+.++ +. .+.+.|. ..+.++-+.
T Consensus 258 ieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKL---r~-----fiedsDq-NLKYlgLla------ 322 (877)
T KOG1059|consen 258 IEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKL---RI-----FIEDSDQ-NLKYLGLLA------ 322 (877)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHH---hh-----hhhcCCc-cHHHHHHHH------
Confidence 33333333332222233355555554321 11 12222222 11 1223332 223333222
Q ss_pred hhHHH-HhcChhHHHHHHHHHhcccCCCCCchhhhhcHHHHHHH
Q 001789 315 APSLI-VEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTL 357 (1013)
Q Consensus 315 ~~~~l-~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~l~FW~~l 357 (1013)
...| ..|+..++..-+++++|..-. |..|.-.+++--|.+
T Consensus 323 -m~KI~ktHp~~Vqa~kdlIlrcL~Dk--D~SIRlrALdLl~gm 363 (877)
T KOG1059|consen 323 -MSKILKTHPKAVQAHKDLILRCLDDK--DESIRLRALDLLYGM 363 (877)
T ss_pred -HHHHhhhCHHHHHHhHHHHHHHhccC--CchhHHHHHHHHHHH
Confidence 2222 234445566778899998864 667777777765543
No 76
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=43.31 E-value=6.1e+02 Score=29.80 Aligned_cols=85 Identities=13% Similarity=0.064 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHHH-hcChHHHHHHHHhhccCCCCCCccchHHHHHHHHHHHHHhcCCCCCCh
Q 001789 5 LQIKVAQAVHVLNHDTESCNRVAANQWLVQF-QQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQS 83 (1013)
Q Consensus 5 ~~~~v~~av~~ly~~~d~~~~~~A~~~L~~f-q~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaa~tL~~kI~~~w~~l~~ 83 (1013)
..+++.++++.+..++....|=.|-..|+++ ++.|+-...|..=+.+-- ...+..+--||-.||-.. =.+
T Consensus 300 ~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLI--sd~Nr~IstyAITtLLKT-------Gt~ 370 (898)
T COG5240 300 FVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLI--SDENRTISTYAITTLLKT-------GTE 370 (898)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHh--hcccccchHHHHHHHHHc-------Cch
Confidence 3456667777777777777788888888874 556766555543222110 023456777887776421 234
Q ss_pred HHHHHHHHHHHHHHH
Q 001789 84 AAKDALLNALLVAAK 98 (1013)
Q Consensus 84 e~~~~lr~~Ll~~l~ 98 (1013)
+....|-+.+...+.
T Consensus 371 e~idrLv~~I~sfvh 385 (898)
T COG5240 371 ETIDRLVNLIPSFVH 385 (898)
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555554444443
No 77
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=43.26 E-value=2.4e+02 Score=25.27 Aligned_cols=90 Identities=10% Similarity=0.084 Sum_probs=61.8
Q ss_pred hHHHHHHHHHhcCcCc------hHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 001789 527 ARPLLLFLAAGISEAV------SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILG 600 (1013)
Q Consensus 527 L~~vl~~l~~~l~~~~------v~~~Aa~a~~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~ 600 (1013)
+-.+++.+-+.++++. -+.+|-+|+..+.+-|++++. ...|.+..+...-.. .++-+..-+++-...+.
T Consensus 9 ~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~--~a~pQI~acL~saL~---~~eL~~~al~~W~~~i~ 83 (107)
T smart00802 9 FLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHIS--SALPQIMACLQSALE---IPELRSLALRCWHVLIK 83 (107)
T ss_pred HHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhC---chhHHHHHHHHHHHHHH
Confidence 3345666666666643 378899999999999998874 378888877654211 34467778888899999
Q ss_pred cCCcHHHHHHHHHHHHHHHHHH
Q 001789 601 SVSNKELKNNLLARLLSSSYEA 622 (1013)
Q Consensus 601 ~~p~~~~~~~~l~~ll~p~~~~ 622 (1013)
.+++++ ....+++.+.-+...
T Consensus 84 ~L~~~~-l~~ll~~~~~~i~~~ 104 (107)
T smart00802 84 TLKEEE-LGPLLDQIFAAILPL 104 (107)
T ss_pred hCCHHH-HHHHHHHHHHHHHHh
Confidence 998765 556565555444443
No 78
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=42.15 E-value=3.1e+02 Score=36.13 Aligned_cols=94 Identities=18% Similarity=0.171 Sum_probs=52.9
Q ss_pred chhhhHHHHHHHHHHHHhcccccccCcchhcccchHHHHHHhccCC--CcHHHHHHHHHHHhhcCCChhHHHHhhhhhhH
Q 001789 208 QLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEGLPQALLCRVPFLK 285 (1013)
Q Consensus 208 ~~~~l~~~~L~cl~sWi~~~~~~~~~~~~~~~~~ll~~l~~~L~~~--~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~ 285 (1013)
+..+++.+|++|+..-+.. ++..+....+...+-.-+.|. ..+++|+|.+-..+-.++++....+..+ .
T Consensus 828 ~~ialRtkAlKclS~ive~------Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~~i---~ 898 (1692)
T KOG1020|consen 828 NAIALRTKALKCLSMIVEA------DPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYYDQI---I 898 (1692)
T ss_pred chHHHHHHHHHHHHHHHhc------ChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHHHHH---H
Confidence 3467999999999987764 444433333444444445443 5678999888765544433222112111 1
Q ss_pred HhhhcccccCCcHHHHhHHHHHHHHHHHhh
Q 001789 286 ELLLLPALTDGDEKVIGGLACLMSEIGQAA 315 (1013)
Q Consensus 286 ~~~~~~~~~~~d~~~~~~l~~l~~~~~e~~ 315 (1013)
+ .+.+....+.+...+++.++++.+
T Consensus 899 e-----rIlDtgvsVRKRvIKIlrdic~e~ 923 (1692)
T KOG1020|consen 899 E-----RILDTGVSVRKRVIKILRDICEET 923 (1692)
T ss_pred h-----hcCCCchhHHHHHHHHHHHHHHhC
Confidence 1 222333445566777777776655
No 79
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=38.37 E-value=30 Score=32.85 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=32.2
Q ss_pred HHHHHHHhhHHHHHhchhchHHHHHHHHHhcCcCchHHHHHHHH
Q 001789 508 SLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASAL 551 (1013)
Q Consensus 508 t~~~~ig~y~~wl~~~p~~L~~vl~~l~~~l~~~~v~~~Aa~a~ 551 (1013)
.++.++++|-.|+.-+.-.-.+.++.+++.+++|.++..|++.+
T Consensus 105 ~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~~~~A~~cl 148 (148)
T PF08389_consen 105 AALKCLKSWISWIPIELIINSNLLNLIFQLLQSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 34688988888876543333458888899999999999988764
No 80
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.98 E-value=7.5e+02 Score=29.01 Aligned_cols=215 Identities=13% Similarity=0.137 Sum_probs=101.9
Q ss_pred hhhHHHHHHHhhhhcccccCCccchHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhchh---ch--HHH
Q 001789 456 EVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQT---NA--RPL 530 (1013)
Q Consensus 456 ~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~---~L--~~v 530 (1013)
.+|| -|+|.-||.+-++......-...+.++..+...|+.. ++-.++ +.+|..+. ..|. |. ..+
T Consensus 127 q~eA-AWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~------v~eQav-WALgNIag---ds~~~Rd~vl~~g~ 195 (514)
T KOG0166|consen 127 QFEA-AWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSAD------VREQAV-WALGNIAG---DSPDCRDYVLSCGA 195 (514)
T ss_pred HHHH-HHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHH------HHHHHH-HHHhcccc---CChHHHHHHHhhcc
Confidence 4554 6888888776553221110001112233333444322 344453 77776553 2222 11 123
Q ss_pred HHHHHHhcCcCc---hHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHHHccCCcH
Q 001789 531 LLFLAAGISEAV---SSNACASALRKICEDASALIDEPSNLEILMWIGEALEK--RHLPLEDEEEVVGAISLILGSVSNK 605 (1013)
Q Consensus 531 l~~l~~~l~~~~---v~~~Aa~a~~~lc~~c~~~l~~~~~~~~l~~~~~~l~~--~~l~~~~~~~l~eai~~ii~~~p~~ 605 (1013)
+.-|+..+..+. ..+.+.-++.+||+.... ++.++.+..+...+.. ...|.+.....+=|++++...-++
T Consensus 196 l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P----~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne- 270 (514)
T KOG0166|consen 196 LDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNP----SPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNE- 270 (514)
T ss_pred hHHHHHHhccccchHHHHHHHHHHHHHHcCCCC----CCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChH-
Confidence 444445555433 567788899999976652 2244444444443321 344666777777788887654432
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHHHHHHHHHHhhhcccccccccCCCCCCCCchHHHHHHHHH
Q 001789 606 ELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFW 685 (1013)
Q Consensus 606 ~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~ 685 (1013)
.. ... +-...+.++-.++..... . . ....|..++.|.-+-+. ..-.-+-...+
T Consensus 271 ~i-q~v---i~~gvv~~LV~lL~~~~~---~----v-------~~PaLRaiGNIvtG~d~---------QTq~vi~~~~L 323 (514)
T KOG0166|consen 271 KI-QMV---IDAGVVPRLVDLLGHSSP---K----V-------VTPALRAIGNIVTGSDE---------QTQVVINSGAL 323 (514)
T ss_pred HH-HHH---HHccchHHHHHHHcCCCc---c----c-------ccHHHhhccceeeccHH---------HHHHHHhcChH
Confidence 21 111 122344555555554321 0 0 01235555554433110 00111224567
Q ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHH
Q 001789 686 PMLEKLFRSEHMENGNLSTAACRALSLAIQ 715 (1013)
Q Consensus 686 ~~l~~i~~~~~~~~~~v~e~~c~~~k~~i~ 715 (1013)
|.+..++.. ...+ .|...+|-.+..+..
T Consensus 324 ~~l~~ll~~-s~~~-~ikkEAcW~iSNItA 351 (514)
T KOG0166|consen 324 PVLSNLLSS-SPKE-SIKKEACWTISNITA 351 (514)
T ss_pred HHHHHHhcc-Ccch-hHHHHHHHHHHHhhc
Confidence 777777752 2222 266667777776543
No 81
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=36.50 E-value=8.8e+02 Score=29.68 Aligned_cols=50 Identities=22% Similarity=0.233 Sum_probs=40.1
Q ss_pred HHHHHHHhhHHHHHhchhchHHHHHHHHHhcCcCchHHHHHHHHHHHHHH
Q 001789 508 SLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICED 557 (1013)
Q Consensus 508 t~~~~ig~y~~wl~~~p~~L~~vl~~l~~~l~~~~v~~~Aa~a~~~lc~~ 557 (1013)
+++.++|+|-.|+.-+---=.+.++.|++.+...+++.+||..+..+..+
T Consensus 212 ~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl~ieelR~aac~cilaiVsK 261 (980)
T KOG2021|consen 212 SCLDCIGSFVSWIDINLIANDYFLNLLYKFLNIEELRIAACNCILAIVSK 261 (980)
T ss_pred HHHHHHHHHhhhhhhhhhhchhHHHHHHHHHhHHHHHHHHHHHHHHHHhc
Confidence 44699999999998654333567788888888888999999999998865
No 82
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=34.56 E-value=3.1e+02 Score=30.84 Aligned_cols=124 Identities=18% Similarity=0.143 Sum_probs=65.1
Q ss_pred HHHHHHchhc------ccCchHHHHHHHhhcccCCCcchHHHHHHHhhchhccccccccccCCChHHHHHHHHHHHh-hh
Q 001789 114 ALSALILRAV------EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLS-HT 186 (1013)
Q Consensus 114 ~La~l~~~~~------~W~~~i~~li~~l~~~~~~~~~~~~~L~iL~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~-~~ 186 (1013)
.|+.++.+.+ .|..+.+++...+-+. +.....+.+++++.+-....+. +.+.+ +.
T Consensus 6 ~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~--~~~vraa~yRilRy~i~d~~~l----------------~~~~~l~i 67 (371)
T PF14664_consen 6 DLVDLLKRHPTLKYDLVLSFFGERIQCMLLSD--SKEVRAAGYRILRYLISDEESL----------------QILLKLHI 67 (371)
T ss_pred HHHHHHHhCchhhhhhhHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHHHcCHHHH----------------HHHHHcCC
Confidence 3455555544 4777777777644332 2334456777777665432210 01111 11
Q ss_pred hHHHHHHHHhhhhccCCCCCcchhhhHHHHHHHHHHHHhc--ccccccCcchhcccchHHHHHHhc--cCCCcHHHHHHH
Q 001789 187 PMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRA--GCFTEISQGSLAAHPLLNFVFNSL--QVQSSFDVAIEV 262 (1013)
Q Consensus 187 ~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~L~cl~sWi~~--~~~~~~~~~~~~~~~ll~~l~~~L--~~~~~~~~a~~~ 262 (1013)
+ .++...+.... ....-+.+|||-+..|+.+ |.. .+|. .++..+.... .++.++..|+++
T Consensus 68 d---~~ii~SL~~~~------~~~~ER~QALkliR~~l~~~~~~~-~~~~------~vvralvaiae~~~D~lr~~clet 131 (371)
T PF14664_consen 68 D---IFIIRSLDRDN------KNDVEREQALKLIRAFLEIKKGPK-EIPR------GVVRALVAIAEHEDDRLRRICLET 131 (371)
T ss_pred c---hhhHhhhcccC------CChHHHHHHHHHHHHHHHhcCCcc-cCCH------HHHHHHHHHHhCCchHHHHHHHHH
Confidence 1 12222333322 1223467999999999998 321 2232 2333333333 345678889999
Q ss_pred HHHHhhcCC
Q 001789 263 LVELVGRHE 271 (1013)
Q Consensus 263 l~eil~~~~ 271 (1013)
++|+.-...
T Consensus 132 L~El~l~~P 140 (371)
T PF14664_consen 132 LCELALLNP 140 (371)
T ss_pred HHHHHhhCH
Confidence 998776553
No 83
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=32.66 E-value=1.1e+02 Score=30.37 Aligned_cols=47 Identities=11% Similarity=0.102 Sum_probs=38.3
Q ss_pred HHHHhhHHHHHhchhchHHHHHHHHHhcCcCc--hHHHHHHHHHHHHHH
Q 001789 511 DVIGSYSKWISAFQTNARPLLLFLAAGISEAV--SSNACASALRKICED 557 (1013)
Q Consensus 511 ~~ig~y~~wl~~~p~~L~~vl~~l~~~l~~~~--v~~~Aa~a~~~lc~~ 557 (1013)
.++..+++...++|..+.+.++.++.+|.++. |+..|...+.++...
T Consensus 7 n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~ 55 (178)
T PF12717_consen 7 NAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE 55 (178)
T ss_pred HHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc
Confidence 44555566777899999999999999999864 899998888888754
No 84
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=29.18 E-value=1e+03 Score=28.29 Aligned_cols=188 Identities=10% Similarity=0.058 Sum_probs=83.4
Q ss_pred HHHHhhHHHHHhchhchHHHHHHHHHhcCcC--chHHHHHHHHHHHHHHhhcccCCCccHHHH-HHHHHHHHhcCCChhh
Q 001789 511 DVIGSYSKWISAFQTNARPLLLFLAAGISEA--VSSNACASALRKICEDASALIDEPSNLEIL-MWIGEALEKRHLPLED 587 (1013)
Q Consensus 511 ~~ig~y~~wl~~~p~~L~~vl~~l~~~l~~~--~v~~~Aa~a~~~lc~~c~~~l~~~~~~~~l-~~~~~~l~~~~l~~~~ 587 (1013)
..|...+.+-+.+|++++.+...|.+-|... .-..+.-.||..+-+.-.+. .+..+ .++... ... +...
T Consensus 78 ~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~-----tL~~lf~~i~~~-~~~--de~~ 149 (556)
T PF05918_consen 78 QAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG-----TLTGLFSQIESS-KSG--DEQV 149 (556)
T ss_dssp HHHHHGGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH-----HHHHHHHHHH----HS---HHH
T ss_pred HHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH-----HHHHHHHHHHhc-ccC--chHH
Confidence 3444445555667888888888887777643 24455566666655432221 12222 222210 011 3456
Q ss_pred HHHHHHHHHHHHccCCcHHHH-HHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHHHHHHHHHHhhhccccccccc
Q 001789 588 EEEVVGAISLILGSVSNKELK-NNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVP 666 (1013)
Q Consensus 588 ~~~l~eai~~ii~~~p~~~~~-~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~ 666 (1013)
|++++.-|..-+..++.+... ..-.+. .++..+..++.... .+ ..+-+..+++.+..
T Consensus 150 Re~~lkFl~~kl~~l~~~~~~p~~E~e~---~i~~~ikkvL~DVT-------ae-----------EF~l~m~lL~~lk~- 207 (556)
T PF05918_consen 150 RERALKFLREKLKPLKPELLTPQKEMEE---FIVDEIKKVLQDVT-------AE-----------EFELFMSLLKSLKI- 207 (556)
T ss_dssp HHHHHHHHHHHGGGS-TTTS---HHHHH---HHHHHHHHHCTT---------HH-----------HHHHHHHHHHTSGG-
T ss_pred HHHHHHHHHHHHhhCcHHHhhchHHHHH---HHHHHHHHHHHhcc-------HH-----------HHHHHHHHHHhCcc-
Confidence 788887776666555543311 011222 23455555554210 01 12222333444331
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHH--hhhc-cchHHHHHHHHHHHHHHHHh--chhhhhhHHHHHHHHH
Q 001789 667 LPTNPAGDDPIFALLRVFWPMLEKLFR--SEHM-ENGNLSTAACRALSLAIQSS--GQHFVTLLPQVLDCLS 733 (1013)
Q Consensus 667 ~~~~~~~~~p~~~~~~~i~~~l~~i~~--~~~~-~~~~v~e~~c~~~k~~i~~~--~~~~~~~l~~l~~~l~ 733 (1013)
+. ...+ ..-.+++..++..... ..|. .|.+.++++..|+++++.-+ +.....|+.-+++.++
T Consensus 208 ~~----~~~t-~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvl 274 (556)
T PF05918_consen 208 YG----GKQT-IEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVL 274 (556)
T ss_dssp -------GSS-HHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTC
T ss_pred cc----ccCC-hHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhc
Confidence 10 0011 1234456666665442 1233 78899999999999886654 3344445555554443
No 85
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=27.11 E-value=3.7e+02 Score=34.11 Aligned_cols=83 Identities=16% Similarity=0.101 Sum_probs=57.3
Q ss_pred HHhhHHHHHhchhchHHHHHHHHHh-cCc--CchHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHH
Q 001789 513 IGSYSKWISAFQTNARPLLLFLAAG-ISE--AVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEE 589 (1013)
Q Consensus 513 ig~y~~wl~~~p~~L~~vl~~l~~~-l~~--~~v~~~Aa~a~~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~ 589 (1013)
-+..+..++..|.|..++++=++.. +.+ +.++..|+.++.+|...-.+.+.. +.++.++.... .-+...+.
T Consensus 527 y~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~-~~L~~lld~~l-----s~~~~~r~ 600 (1133)
T KOG1943|consen 527 YLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLAD-YVLPPLLDSTL-----SKDASMRH 600 (1133)
T ss_pred HHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcc-cchhhhhhhhc-----CCChHHhh
Confidence 3444556667788999999888754 654 668999999999999887777753 45544443321 22556677
Q ss_pred HHHHHHHHHHcc
Q 001789 590 EVVGAISLILGS 601 (1013)
Q Consensus 590 ~l~eai~~ii~~ 601 (1013)
..+-+.|.|+.+
T Consensus 601 g~~la~~ev~~~ 612 (1133)
T KOG1943|consen 601 GVFLAAGEVIGA 612 (1133)
T ss_pred hhHHHHHHHHHH
Confidence 777777777765
No 86
>PRK10236 hypothetical protein; Provisional
Probab=26.98 E-value=1.2e+02 Score=31.16 Aligned_cols=61 Identities=15% Similarity=0.274 Sum_probs=36.9
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHH---HHhc---ChHHHHHHHHhhccCCCCCCccchHHHHHHHHHHHHHhcCC
Q 001789 7 IKVAQAVHVLNHDTESCNRVAANQWLV---QFQQ---TDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEG 78 (1013)
Q Consensus 7 ~~v~~av~~ly~~~d~~~~~~A~~~L~---~fq~---s~~aW~~~~~LL~~~~~~~~~~~~~~ffaa~tL~~kI~~~w 78 (1013)
+++...+..|-++.|-. ....+-|. .+|+ .+.-..--|+++. .+.|+||+.++.+.++...
T Consensus 20 edL~~Lv~~Lt~d~dG~--~R~te~lt~~~~yk~~~~~~~~~~~yw~~Ia---------~elq~fGgnt~~n~lRG~G 86 (237)
T PRK10236 20 EQLANFARLLTHNEKGK--TRLSSVLMRNELFKSMEGHPEQHRRNWQLIA---------GELQHFGGDSIANKLRGHG 86 (237)
T ss_pred HHHHHHHHHHhcCCCCC--EeehhhhcccHHHHhhcccchhHHHHHHHHH---------HHHHHhcchHHHHHHhcCC
Confidence 46777787776554422 23333343 4666 4333333344443 4899999999998888543
No 87
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=26.90 E-value=3.3e+02 Score=27.06 Aligned_cols=66 Identities=9% Similarity=0.072 Sum_probs=45.7
Q ss_pred HHHHHH-hhHHHHhcchhchHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhhhhhccCCCCCCCCcchHHHHHHHHHhh
Q 001789 803 STFVRT-SRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHS 881 (1013)
Q Consensus 803 ~~~l~~-~p~~l~~~~~~~l~~il~~~l~~l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 881 (1013)
..++++ .+..++ +.++.++.-...|+...++++..++++.+..++... +.+.+.+..|
T Consensus 63 ~dll~~~~~~kil----PvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~-----------------~~vG~aLvPy 121 (183)
T PF10274_consen 63 KDLLERGGGEKIL----PVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSS-----------------DMVGEALVPY 121 (183)
T ss_pred HHHHHhcchhHHH----HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh-----------------hhhhHHHHHH
Confidence 345555 666666 457777766778999999999999999998876532 2355666666
Q ss_pred hHHHHHHH
Q 001789 882 GEGLVSNV 889 (1013)
Q Consensus 882 g~~Lv~~l 889 (1013)
+.+|+..+
T Consensus 122 yrqLLp~l 129 (183)
T PF10274_consen 122 YRQLLPVL 129 (183)
T ss_pred HHHHHHHH
Confidence 66665443
No 88
>PF09184 PPP4R2: PPP4R2; InterPro: IPR015267 PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast [], and may confer resistance in higher eukaryotes.
Probab=25.78 E-value=4.5e+02 Score=28.39 Aligned_cols=109 Identities=13% Similarity=0.174 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCh---HHHHHHHHhhccCCCCCCccchHHHHHHHHHHHHHhcCCCCCC
Q 001789 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTD---AAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQ 82 (1013)
Q Consensus 6 ~~~v~~av~~ly~~~d~~~~~~A~~~L~~fq~s~---~aW~~~~~LL~~~~~~~~~~~~~~ffaa~tL~~kI~~~w~~l~ 82 (1013)
++.|.++++.+-.-...+.-.....+|...-++. ..|.....|+.+-- ...--.||- ..-...+. ......
T Consensus 2 ~~~~~~~l~~f~~~k~~~l~~~L~~il~~ia~tg~~~~~W~~lk~l~~~kl----~~v~~e~~~-~~p~~~~~-~~~~~~ 75 (288)
T PF09184_consen 2 IEELLDALENFMKIKSKELPPELEDILEHIAKTGETWYPWSLLKSLFRHKL----EKVIDEFFE-SAPEESGP-QNPNVE 75 (288)
T ss_pred hHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHH----HHHHHHHHh-cCccccCC-CCCCcc
Confidence 3567788888765444466678888888887773 46888777775410 001112220 00001111 122344
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHch
Q 001789 83 SAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILR 121 (1013)
Q Consensus 83 ~e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~ 121 (1013)
......++..+..++..|.. +++-+.+||..|..=..+
T Consensus 76 ~~~~~~~~~~~~~~~~~f~~-~PfTiqRlcEl~~~P~~~ 113 (288)
T PF09184_consen 76 PEDYEEMKERILELLDSFDE-PPFTIQRLCELLLDPRKH 113 (288)
T ss_pred hhhHHHHHHHHHHHHHhcCC-CChhHHHHHHHHhChhhc
Confidence 56778899999999988876 899999999776554333
No 89
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=24.77 E-value=6.4e+02 Score=25.10 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH---hchhhhhhHHHHHHHH
Q 001789 676 PIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQS---SGQHFVTLLPQVLDCL 732 (1013)
Q Consensus 676 p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~k~~i~~---~~~~~~~~l~~l~~~l 732 (1013)
-+++++-++.+-+...+.. .|.+|+.++..++++.+++ .|+...|++..++..+
T Consensus 73 kilPvlPqLI~plk~AL~t---r~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~l 129 (183)
T PF10274_consen 73 KILPVLPQLIIPLKRALNT---RDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPVL 129 (183)
T ss_pred HHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 3556665555555555432 6899999999999998665 4666677766665544
No 90
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=24.68 E-value=2.8e+02 Score=28.28 Aligned_cols=62 Identities=13% Similarity=0.275 Sum_probs=47.7
Q ss_pred hccCCChHHHHHHHHHHHHHhcC--hHHHHHHHHhhccCCCCCCccchHHHHHHHHHHHHHhcCCCCCChHHHH
Q 001789 16 LNHDTESCNRVAANQWLVQFQQT--DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKD 87 (1013)
Q Consensus 16 ly~~~d~~~~~~A~~~L~~fq~s--~~aW~~~~~LL~~~~~~~~~~~~~~ffaa~tL~~kI~~~w~~l~~e~~~ 87 (1013)
+|+-+.|..|+-|..++.+.+.. ++-|.++..|.+++- -|.|++|...|..+.. .+++++..
T Consensus 20 f~Gv~~P~~R~lak~~~~~~~~~~~~~~~~l~~~Lw~~~~------~E~r~~al~~l~~~~~----~~~~~~~~ 83 (208)
T cd07064 20 FYGIKTPERRALSKPFLKESKLPDKEELWELVLELWQQPE------REYQYVAIDLLRKYKK----FLTPEDLP 83 (208)
T ss_pred cCCCChHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcchH------HHHHHHHHHHHHHHHh----cCCHHHHH
Confidence 56777899999999999988775 688999999997642 5899999988877544 24555433
No 91
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=23.76 E-value=1.4e+02 Score=21.07 Aligned_cols=27 Identities=15% Similarity=0.033 Sum_probs=20.2
Q ss_pred HHHHHHHhcCc--CchHHHHHHHHHHHHH
Q 001789 530 LLLFLAAGISE--AVSSNACASALRKICE 556 (1013)
Q Consensus 530 vl~~l~~~l~~--~~v~~~Aa~a~~~lc~ 556 (1013)
+++.|++.|.+ ++++..|+.|+.+||.
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 45566666665 4499999999999873
No 92
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.81 E-value=1.5e+03 Score=28.00 Aligned_cols=180 Identities=14% Similarity=0.130 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHhhhhcCCcchHHHHhHHHHHHhcCCC
Q 001789 681 LRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKD 760 (1013)
Q Consensus 681 ~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~k~~i~~~~~~~~~~l~~l~~~l~~~f~~~~~~~~~L~l~s~li~~~g~~~ 760 (1013)
...+.|-++.+++ + .++-|..++.-|.-|.++.....+..|++.....+.+. .|+..+.....+.+.....+
T Consensus 140 ardlapeVe~Ll~--~-~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek-----~hGVL~~~l~l~~e~c~~~~ 211 (866)
T KOG1062|consen 140 ARDLAPEVERLLQ--H-RDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEK-----HHGVLIAGLHLITELCKISP 211 (866)
T ss_pred hHHhhHHHHHHHh--C-CCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhc-----CCceeeeHHHHHHHHHhcCH
Confidence 3456788888886 3 67788888888888888876666666666655554331 23332222222222222111
Q ss_pred CcchhHHHHHHHHhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHH-h-hHHHHh-cchhchHHHHHHHHHHhccCCh
Q 001789 761 EYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRT-S-RKEVLA-ASGALLEVSFQKAAICCTAMHR 837 (1013)
Q Consensus 761 ~~~~~i~~l~~~l~~~t~l~~l~~~~~~~~~pD~~~~~f~l~~~~l~~-~-p~~l~~-~~~~~l~~il~~~l~~l~~~e~ 837 (1013)
+... .+-|++.+|+..+.++... + |..=+. .+.|+++.-+-..+.-+...+.
T Consensus 212 ~~l~-------------------------~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~ 266 (866)
T KOG1062|consen 212 DALS-------------------------YFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDA 266 (866)
T ss_pred HHHH-------------------------HHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCc
Confidence 1111 1122444444444444432 1 111111 1335555533345556677788
Q ss_pred hHHHHHHHHHHHHHhhhhhhccCCCCCCCCcchHHHHHHHHHhhhHHHHHHHHHHhcCCCcccchhhhh-HHHHHHHH
Q 001789 838 GAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVHKCA-TILQQLAA 914 (1013)
Q Consensus 838 ~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lv~~ll~~l~g~~~rs~~~~~~-~iL~~L~~ 914 (1013)
++.......|....+++-++ ..-|..|+..++..+.+--|.+++..++ .||.++..
T Consensus 267 daSd~M~DiLaqvatntdss---------------------kN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~ 323 (866)
T KOG1062|consen 267 DASDLMNDILAQVATNTDSS---------------------KNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLL 323 (866)
T ss_pred cHHHHHHHHHHHHHhccccc---------------------ccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhc
Confidence 88888888888877765321 1346677777777777766777665544 66666553
No 93
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=22.66 E-value=3.5e+02 Score=23.79 Aligned_cols=90 Identities=18% Similarity=0.063 Sum_probs=51.6
Q ss_pred CCChHHHHHHHHHHHHHhcC-h---------HHHHHHHHhhccCCCCCCccchHHHHHHHHHHHHHhcCCCCCChHHHHH
Q 001789 19 DTESCNRVAANQWLVQFQQT-D---------AAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDA 88 (1013)
Q Consensus 19 ~~d~~~~~~A~~~L~~fq~s-~---------~aW~~~~~LL~~~~~~~~~~~~~~ffaa~tL~~kI~~~w~~l~~e~~~~ 88 (1013)
++++..+..|-..|..+-.. | ++++....+|..+ +..++..++.+|.+-.... ++....
T Consensus 18 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~------~~~v~~~a~~~L~~l~~~~-----~~~~~~ 86 (120)
T cd00020 18 SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE------DEEVVKAALWALRNLAAGP-----EDNKLI 86 (120)
T ss_pred cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC------CHHHHHHHHHHHHHHccCc-----HHHHHH
Confidence 45566777777666666554 2 5555666677553 3688888888888776532 222222
Q ss_pred -HHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHH
Q 001789 89 -LLNALLVAAKRFS-SGPPQLLTQICLALSALI 119 (1013)
Q Consensus 89 -lr~~Ll~~l~~~~-~~~~~v~~kL~~~La~l~ 119 (1013)
.+..++..+.+.- .++..++...+.+|..++
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 2222444444322 234567777777766553
No 94
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=21.67 E-value=1.5e+03 Score=27.39 Aligned_cols=202 Identities=13% Similarity=0.090 Sum_probs=96.2
Q ss_pred HHHHhhHHHHHhchhchHHHHHHHHHhcC--cCchHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHH-hc---CCC
Q 001789 511 DVIGSYSKWISAFQTNARPLLLFLAAGIS--EAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALE-KR---HLP 584 (1013)
Q Consensus 511 ~~ig~y~~wl~~~p~~L~~vl~~l~~~l~--~~~v~~~Aa~a~~~lc~~c~~~l~~~~~~~~l~~~~~~l~-~~---~l~ 584 (1013)
.-+.+...|+..+|..+...+..++..=. +..++-.|---+..+|..-.... ..+.|.+.|-.+. +. ...
T Consensus 264 ~~l~~l~~~~~~f~k~lk~liK~~V~vWstge~~~rv~Afl~l~~l~~~~~~~~----l~~vlk~mY~afv~nsk~~~~~ 339 (661)
T KOG2256|consen 264 RHLTVLVPFLATFPKLLKKLIKAVVHVWSTGEESLRVLAFLCLIDLCRKFKSTC----LDPVLKTMYLAFVRNSKFVTVN 339 (661)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHheeeccCCcchhhHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHhCCCCCCc
Confidence 56666677777888877776666653222 33467666666677776655433 3445556665442 21 111
Q ss_pred hhhHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHHHHHHHHHHhh---hccc
Q 001789 585 LEDEE-EVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRM---GTVF 660 (1013)
Q Consensus 585 ~~~~~-~l~eai~~ii~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L---~~i~ 660 (1013)
..... .+-.+...+.+ +.... ....-...+..+.--|.+.+......+.+ ..|. -+.++|| ..++
T Consensus 340 tl~~i~Fl~~slvEL~~-ld~~~-~Yq~aF~yIrQLAihLRnam~~k~K~s~~---~VYn------Wqfi~cL~lW~rvi 408 (661)
T KOG2256|consen 340 TLPLINFLQNSLVELLG-LDLQV-SYQHAFVYIRQLAIHLRNAMITKNKESVQ---SVYN------WQYVHCLDLWLRVI 408 (661)
T ss_pred ccchhHHHHHHHHHHhc-cCHHH-HHHHHHHHHHHHHHHHHHHhhcCCHHHHH---HHHH------HHHHHHHHHHHHHH
Confidence 11122 22233333332 22111 12222233444445555555544321111 1111 1233333 3333
Q ss_pred ccccccCCCCCCCCch-HHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHh
Q 001789 661 SHLPVPLPTNPAGDDP-IFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTN 735 (1013)
Q Consensus 661 ~~l~~~~~~~~~~~~p-~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~k~~i~~~~~~~~~~l~~l~~~l~~~ 735 (1013)
..-+. . . ....| +++..+-+..++.-+- -+....+.-+||+.+.+.-++.|.++ |+.|.+++.+-..
T Consensus 409 sf~~~-~--~-s~lq~LvYpLvQvi~GvirLip---T~qy~PLRlhcir~Li~Ls~ssg~fI-Pi~~ll~Eml~~~ 476 (661)
T KOG2256|consen 409 SFANG-S--A-SQLQPLVYPLVQVILGVIRLIP---TPQYYPLRLHCIRSLISLSRSSGTFI-PLSPLLVEMLKSV 476 (661)
T ss_pred HHhhc-c--H-hhhhhhhhHHHHHHHHHhhhcC---cccchhHHHHHHHHHHHHHhhcCcee-ecHHHHHHHHHHh
Confidence 31111 1 0 11122 2333344444433332 33556677888998888888877654 6777777766543
No 95
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.45 E-value=2.1e+03 Score=29.16 Aligned_cols=145 Identities=11% Similarity=0.056 Sum_probs=81.6
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHh-chhhhhhHHHHHHHHHH---hhhhcCCcch--HHHHhHHHHHHhcC
Q 001789 685 WPMLEKLFRSEHMENGNLSTAACRALSLAIQSS-GQHFVTLLPQVLDCLST---NFVSFQNHEC--YIRTASVVIEEFGH 758 (1013)
Q Consensus 685 ~~~l~~i~~~~~~~~~~v~e~~c~~~k~~i~~~-~~~~~~~l~~l~~~l~~---~f~~~~~~~~--~L~l~s~li~~~g~ 758 (1013)
|.++..++.+.-...-+|.|++|..+.-.++.- -.++...+|.+-+.+.+ +...+.+.+. +...++.++...++
T Consensus 1038 neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d 1117 (1702)
T KOG0915|consen 1038 NEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICD 1117 (1702)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 334444443212244578999999999888853 22334455554444332 2222222222 34445555544444
Q ss_pred CCCcchhHHHHHHHHhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHHhhHHHHhcchhchHHHHHHHHHHhccCChh
Q 001789 759 KDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRG 838 (1013)
Q Consensus 759 ~~~~~~~i~~l~~~l~~~t~l~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~l~~~~~~~l~~il~~~l~~l~~~e~~ 838 (1013)
..+-.. -.+.+. .. ++.+.....++.-++++.-.++.+.++.++.+..+.+ .+..++.+.+.+....|+.
T Consensus 1118 ~~~~~~-~~~~l~----~i-LPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP----~~~~LIp~ll~~~s~lE~~ 1187 (1702)
T KOG0915|consen 1118 VTNGAK-GKEALD----II-LPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKP----HFPKLIPLLLNAYSELEPQ 1187 (1702)
T ss_pred cCCccc-HHHHHH----HH-HHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcc----hhhHHHHHHHHHccccchH
Confidence 321111 111111 22 4445444455666999999999999999999998764 4667777777777766655
Q ss_pred H
Q 001789 839 A 839 (1013)
Q Consensus 839 ~ 839 (1013)
+
T Consensus 1188 v 1188 (1702)
T KOG0915|consen 1188 V 1188 (1702)
T ss_pred H
Confidence 4
No 96
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=21.06 E-value=1.7e+03 Score=28.05 Aligned_cols=220 Identities=14% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHhccCCChHHHHH-HHHHHHH---HhcChHHHHHHHHhhccCCCCCCccchHHHHHHHHHHHHHhcCCCCCChH---H
Q 001789 13 VHVLNHDTESCNRVA-ANQWLVQ---FQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSA---A 85 (1013)
Q Consensus 13 v~~ly~~~d~~~~~~-A~~~L~~---fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaa~tL~~kI~~~w~~l~~e---~ 85 (1013)
+....+++|-..+.. ...|+.+ .+++|++-.++..++..-+.|+..+.-++-|...+....--...+...+- -
T Consensus 781 v~~y~gs~dls~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~Ls~~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLy 860 (1030)
T KOG1967|consen 781 VENYCGSLDLSEIALTVLAWVTKALLLRNHPESSEIAEKLLDLLSGPSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILY 860 (1030)
T ss_pred HhhccCCcchhhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhcCCccccchHHHhhHhhhccChHHhhhccccchhHHH
Q ss_pred HHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHchhc------ccCchHHHHHHHhhcccCCCcchHHHHHHHhhchh
Q 001789 86 KDALLNALLVAAKR-FSSGPPQLLTQICLALSALILRAV------EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPE 158 (1013)
Q Consensus 86 ~~~lr~~Ll~~l~~-~~~~~~~v~~kL~~~La~l~~~~~------~W~~~i~~li~~l~~~~~~~~~~~~~L~iL~~l~E 158 (1013)
++-....+...+.+ +...+..++.-+-.+|+...-+.| .-|...+-+++.++-. +....--.++.+..+--
T Consensus 861 kQRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~--D~~v~vstl~~i~~~l~ 938 (1030)
T KOG1967|consen 861 KQRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMP--DVIVRVSTLRTIPMLLT 938 (1030)
T ss_pred HHHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCC--ccchhhhHhhhhhHHHH
Q ss_pred ccccccccccCCChHHHHHHHHHHHhhhhHHHHHHHHhhhhccCCCCCcchhhhHHHHHHHHHHHHhcccccccCcchh-
Q 001789 159 EVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSL- 237 (1013)
Q Consensus 159 E~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~L~cl~sWi~~~~~~~~~~~~~- 237 (1013)
|...- +..+..+++.++..+-..+.+ ....++..+|+|+.+-.+ ..|...+
T Consensus 939 ~~~tL------------------~t~~~~Tlvp~lLsls~~~~n-----~~~~VR~~ALqcL~aL~~-----~~P~~~l~ 990 (1030)
T KOG1967|consen 939 ESETL------------------QTEHLSTLVPYLLSLSSDNDN-----NMMVVREDALQCLNALTR-----RLPTKSLL 990 (1030)
T ss_pred hcccc------------------chHHHhHHHHHHHhcCCCCCc-----chhHHHHHHHHHHHHHhc-----cCCCcccc
Q ss_pred -cccchHHHHHHhccCC--CcHHHHHHH
Q 001789 238 -AAHPLLNFVFNSLQVQ--SSFDVAIEV 262 (1013)
Q Consensus 238 -~~~~ll~~l~~~L~~~--~~~~~a~~~ 262 (1013)
.....+..+...|.|+ -.+..|++|
T Consensus 991 ~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 991 SFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred cccHHHHHHhhhccCcHHHHHHHHHHHH
No 97
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=20.56 E-value=1.5e+03 Score=27.09 Aligned_cols=74 Identities=14% Similarity=0.008 Sum_probs=48.5
Q ss_pred hhchHHHHHHHHHhcCc--CchHHHHHHHHHHHH---HHhhcccCCCccHHHHHHH-HHHHHhcCCChhhHHHHHHHHHH
Q 001789 524 QTNARPLLLFLAAGISE--AVSSNACASALRKIC---EDASALIDEPSNLEILMWI-GEALEKRHLPLEDEEEVVGAISL 597 (1013)
Q Consensus 524 p~~L~~vl~~l~~~l~~--~~v~~~Aa~a~~~lc---~~c~~~l~~~~~~~~l~~~-~~~l~~~~l~~~~~~~l~eai~~ 597 (1013)
..|+++++.-++.-|.+ |.++..|++....|. +.|+..- .+.-+..+ ++++ +...++..-.++.||..
T Consensus 599 kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~----~l~klg~iLyE~l--ge~ypEvLgsil~Ai~~ 672 (975)
T COG5181 599 KPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETK----ELAKLGNILYENL--GEDYPEVLGSILKAICS 672 (975)
T ss_pred CcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHH----HHHHHhHHHHHhc--CcccHHHHHHHHHHHHH
Confidence 46889999999999987 559999988766555 5566421 22223222 3433 23356777788888888
Q ss_pred HHccCC
Q 001789 598 ILGSVS 603 (1013)
Q Consensus 598 ii~~~p 603 (1013)
|.+...
T Consensus 673 I~sv~~ 678 (975)
T COG5181 673 IYSVHR 678 (975)
T ss_pred Hhhhhc
Confidence 887644
No 98
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=20.52 E-value=6.3e+02 Score=32.38 Aligned_cols=59 Identities=12% Similarity=0.170 Sum_probs=49.0
Q ss_pred CCCCchHHHHHHHHHHHHHHhhHHHHhcchhchHHHHHHHHHHhccCChhHHHHHHHHHHHHHhh
Q 001789 789 DQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEE 853 (1013)
Q Consensus 789 ~~~pD~~~~~f~l~~~~l~~~p~~l~~~~~~~l~~il~~~l~~l~~~e~~~~~a~~~fl~~li~~ 853 (1013)
+-.||++..++.-++--++.+|..|+.. . .+.++-|.|.-.+..+-+.+++-+..|.+.
T Consensus 298 DV~~~IRaiCiqeLgiWi~~yP~~Fl~d--s----YLKYiGWtLsDk~~~VRl~~lkaL~~L~e~ 356 (1048)
T KOG2011|consen 298 DVDPDIRAICIQELGIWIKSYPEIFLSD--S----YLKYIGWTLSDKNGTVRLRCLKALIKLYEK 356 (1048)
T ss_pred cCchHHHHHHHHHHHHHHHhccHHHhcc--h----HHHHhcceeecCccHHHHHHHHHHHHHHhc
Confidence 4569999999999999999999999986 3 444677888777888888888888777765
No 99
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=20.39 E-value=1.4e+03 Score=26.63 Aligned_cols=61 Identities=10% Similarity=0.117 Sum_probs=43.6
Q ss_pred CCchHHHHHHHHHHHHHHhhHHHHhcchhchHHHHHHHHHHh-ccCChhHHHHHHHHHHHHHhhh
Q 001789 791 EPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICC-TAMHRGAALAAMSYLSCFLEEC 854 (1013)
Q Consensus 791 ~pD~~~~~f~l~~~~l~~~p~~l~~~~~~~l~~il~~~l~~l-~~~e~~~~~a~~~fl~~li~~~ 854 (1013)
+.....++|.|+..+++++...+-. ..+..+++.++.-+ .....+.++++++++..++..+
T Consensus 147 ~~~~l~~ll~~l~nviKfn~~~l~e---~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~ 208 (464)
T PF11864_consen 147 EESNLSDLLQFLVNVIKFNFNYLDE---DEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYG 208 (464)
T ss_pred hhhhHHHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcC
Confidence 4567889999999999998665432 34555666555443 4556666799999998888764
No 100
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=20.25 E-value=3.1e+02 Score=26.93 Aligned_cols=57 Identities=11% Similarity=0.037 Sum_probs=42.5
Q ss_pred CCCchHHHHHHHHHHHHHHhhHHHHhcchhchHHHHHHHHHHhccCChhHHHHHHHHHHHHHhh
Q 001789 790 QEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEE 853 (1013)
Q Consensus 790 ~~pD~~~~~f~l~~~~l~~~p~~l~~~~~~~l~~il~~~l~~l~~~e~~~~~a~~~fl~~li~~ 853 (1013)
+==|++...|+++..++..|+..+- +..+++.+..|++- |.++..-+...+..++..
T Consensus 39 DGLelRK~ayE~lytlLd~~~~~~~------~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~ 95 (169)
T PF08623_consen 39 DGLELRKAAYECLYTLLDTCLSRID------ISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQL 95 (169)
T ss_dssp GGGHHHHHHHHHHHHHHHSTCSSS-------HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhCC------HHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHh
Confidence 3467999999999999998765432 34567788888876 888888888877777654
Done!