Query 001789
Match_columns 1013
No_of_seqs 214 out of 1045
Neff 9.4
Searched_HMMs 29240
Date Tue Mar 26 16:57:31 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001789.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1084-1088//hhsearch_pdb/001789hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gjx_A Exportin-1; transport, 1.0 1 1 853.3 68.9 914 3-1009 25-1026(1073)
2 4hat_C Exportin-1; heat repeat 1.0 1 1 853.1 77.3 906 3-1009 13-1006(1023)
3 2x1g_F Cadmus; transport prote 1.0 1 1 843.2 70.3 906 6-1013 6-969 (971)
4 2x19_B Importin-13; nuclear tr 1.0 1 1 804.2 85.6 899 5-1012 22-956 (963)
5 3ibv_A Exportin-T; karyopherin 1.0 1 1 746.2 71.3 895 3-1011 3-979 (980)
6 3m1i_C Exportin-1; heat repeat 1.0 1 1 728.1 79.3 907 2-1011 12-1008(1049)
7 3a6p_A Exportin-5; exportin-5, 1.0 1 1 554.6 55.9 913 5-1012 9-1162(1204)
8 1wa5_C Importin alpha RE-expor 1.0 1 1 316.4 57.5 722 3-852 1-791 (960)
9 4fdd_A Transportin-1; heat rep 1.0 1 1 301.2 62.4 742 4-917 10-787 (852)
10 2bpt_A Importin beta-1 subunit 1.0 1 1 279.8 65.8 719 3-852 1-763 (861)
No 1
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=1.00 E-value=1 Score=853.27 Aligned_cols=914 Identities=13% Similarity=0.175 Sum_probs=723.3
Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 41799999999996049995879999999999711948999999965359878776302789877989999823788889
Q 001789 3 MDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQ 82 (1013)
Q Consensus 3 ~~~~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~w~~l~ 82 (1013)
|| .+.++++|.++|+ |++++|++|++||++||++|+||+.|..+|..+ .+.++|||||++|+++|+++|+.+|
T Consensus 25 ~D-v~~Le~lv~~ly~-p~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~s-----~~~~vR~fAa~~L~~~I~~~W~~L~ 97 (1073)
T 3gjx_A 25 LD-INLLDNVVNCLYH-GEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFS-----QNMNTKYYGLQILENVIKTRWKILP 97 (1073)
T ss_dssp CS-HHHHHHHHHTTTC-SSHHHHHHHHHHHHTSSCCSCHHHHHTCC---C-----CSHHHHHHHHHHHHHHHHHTGGGSC
T ss_pred CC-HHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC-----CCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99-9999999999829-999999999999999872905899999994689-----9899999999999999976466299
Q ss_pred HHHHHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHHHCHHC--CCCCHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 478999999999999982379------97999999999999980412--5675599999994103589840499999972
Q 001789 83 SAAKDALLNALLVAAKRFSSG------PPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLT 154 (1013)
Q Consensus 83 ~e~~~~lr~~Ll~~l~~~~~~------~~~v~~kL~~aLa~l~~~~~--~W~~~i~~li~~l~~~~~~~~~~~~lL~iL~ 154 (1013)
++++..||+.|++++.+.+.+ ++.+++|+|.+++.++++.+ .||+++++++..+++ ++..+++.|.+|+
T Consensus 98 ~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~---~~~~~~~~L~IL~ 174 (1073)
T 3gjx_A 98 RNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT---SESLCQNNMVILK 174 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHCCHHHHHHHHHHCC---CHHHHHHHHHHHH
T ss_conf 9999999999999999872685323334689999999999999986833160899999998379---9889999999999
Q ss_pred HCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 10000012465556789678999999997403699999999562014899976215648999999999986036665571
Q 001789 155 VLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQ 234 (1013)
Q Consensus 155 ~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~ 234 (1013)
.|+||+.++++.+ ++..||.++++.+...++.|+.++..+++... +..+...+|+|+.+|+. |++.
T Consensus 175 ~L~EEV~d~~~~~--l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~-------~~~lv~~~L~~L~~~~s-----WI~i 240 (1073)
T 3gjx_A 175 LLSEEVFDFSSGQ--ITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQ-------NAPLVHATLETLLRFLN-----WIPL 240 (1073)
T ss_dssp HHHHHHTTSHHHH--BCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHTT-----TSCT
T ss_pred HHHHHHHHCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------CHHHHHHHHHHHHHHHH-----HCCH
T ss_conf 9999998514342--30889999999999999999999998755568-------87999999999999998-----6589
Q ss_pred CHHCCCCHHHHH-HHHCCCCCCHHHHHHHHHHHHHCCC-CHH---HHHHHHHH-----------HHHHHHHCCCCCCCCH
Q ss_conf 011012159999-9731698818999999999951488-946---98986434-----------2387510000047838
Q 001789 235 GSLAAHPLLNFV-FNSLQVQSSFDVAIEVLVELVGRHE-GLP---QALLCRVP-----------FLKELLLLPALTDGDE 298 (1013)
Q Consensus 235 ~~~~~~~ll~~l-~~~L~~~~~~~~a~~~l~eii~~~~-~~~---~~l~~~~~-----------~l~~~~~~~~~~~~d~ 298 (1013)
+.+.++++++.+ +..|++++++++|++|+++|+++.- ++. ..++..++ ++.+.|. ...++|.
T Consensus 241 ~~i~~~~ll~~L~~~~L~~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~--~~~~~d~ 318 (1073)
T 3gjx_A 241 GYIFETKLISTLIYKFLNVPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYS--NGKDDEQ 318 (1073)
T ss_dssp HHHHSSSHHHHHHHHTSSSHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHH--TCCTTHH
T ss_pred HHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH--CCCHHHH
T ss_conf 87605428999999866986789999999999996415206899999999999999886588202788874--4655149
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHCCCCCCCCCHHHHHCHHHHHHHHHHHHCCCHHH-------
Q ss_conf 89927999999997864599981693---48999999980006888773034400999999998870032345-------
Q 001789 299 KVIGGLACLMSEIGQAAPSLIVEASP---EALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASI------- 368 (1013)
Q Consensus 299 ~~~~~l~~l~~~~~e~~~~~l~~~~~---~~~~ll~~ll~~~~~p~~d~~v~~~~l~FW~~l~~~l~~~~~~~------- 368 (1013)
++++++|++|++++++|...+.+++. .....+++++.|++++ |++++++||+||+.|.++++...+..
T Consensus 319 e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~--d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~ 396 (1073)
T 3gjx_A 319 NFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVE--ETEIFKICLEYWNHLAAELYRESPFSTSASPLL 396 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 999999999999999999998358542479999999999983899--199999999999999999986142333445100
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH---------HHHHHHHHHHHHHCCHH
Q ss_conf ----44434344521889999999999860668998889898888633999999---------99999999988507067
Q 001789 369 ----AKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRM---------NLVELLVDICQLLRSAT 435 (1013)
Q Consensus 369 ----~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~~~~~~~~~~d~~d~f~~fR~---------~~~D~l~~~~~il~~~~ 435 (1013)
.++.+.++..|+|+|.+|+.+++.||.+|+|.+.. +.|++|.+++||+ .++|++.+++.+ +.+.
T Consensus 397 ~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~--e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l-~~~~ 473 (1073)
T 3gjx_A 397 SGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVV--ENDQGEVVREFMKDTDSINLYKNMRETLVYLTHL-DYVD 473 (1073)
T ss_dssp TSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEE--ECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHH-CHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCC-CHHH
T ss_conf 222100103389999999999999999825999423546--7651268999886132189999999999987048-8899
Q ss_pred HHHHHHHHHHCC-CCCCCCCHHHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999998633139-999988303458999887422101346-876664789999998316853555567999998899999
Q 001789 436 FIQKVFFGSWGS-ANVPIPWKEVETKLFALNVVSEVVLQE-GQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVI 513 (1013)
Q Consensus 436 ~l~~~~~~~~~~-~~~~~~W~~~Ea~L~~l~~iae~~~~~-~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~i 513 (1013)
++..+++.+... .+..++|+.+||+||++|+||+++.++ ++ ..++.+++.|..+|++++.+ ..++++++++|+++
T Consensus 474 ~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~-~~Lp~vi~~Ll~L~e~~~~k--d~k~~vas~i~~vl 550 (1073)
T 3gjx_A 474 TEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEK-RFLVTVIKDLLGLCEQKRGK--DNKAIIASNIMYIV 550 (1073)
T ss_dssp HHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHH-HHHHHHHHHHHHHHHHSCSH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC-CHHHHHHHHHHCCCCCCCCC--CHHHHHHHHHHHHH
T ss_conf 9999999999984678888788839999999987727862100-22999999986341444434--12699999999999
Q ss_pred HHHHHHHHHCHHCHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHCCCCCCC---CHHHHHHHHHHH--HHCCCCHH
Q ss_conf 841888986533249999999981176--83279999999999999320049975---089999999988--72699945
Q 001789 514 GSYSKWISAFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALIDEPS---NLEILMWIGEAL--EKRHLPLE 586 (1013)
Q Consensus 514 g~y~~wl~~~p~~L~~vl~~l~~~l~~--~~v~~~Aa~al~~lc~~c~~~l~~~~---~~~~l~~~~~~l--~~~~l~~~ 586 (1013)
|+|++|+..||++|+++++++++++++ ++++.+||.||.+||++|+.+++..+ ..|.+..++..+ ...+++.+
T Consensus 551 grY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~ 630 (1073)
T 3gjx_A 551 GQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQ 630 (1073)
T ss_dssp HHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHH
T ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHH
T ss_conf 50079998677999999999999984498789999999999999999898752355545359999999999999746999
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 29999999999971599078899999998799999999664026998777796136777777788787521001333556
Q 001789 587 DEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVP 666 (1013)
Q Consensus 587 ~~~~l~eai~~ii~~lp~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~ 666 (1013)
+...+|+|+|++++++|++..+..+++.++.|.++.|+++.+++.. ++... .-...++++..+++... .
T Consensus 631 ~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~-----~~~~~-----~d~~~i~~l~~il~~n~-~ 699 (1073)
T 3gjx_A 631 QVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATK-----NVDIL-----KDPETVKQLGSILKTNV-R 699 (1073)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----CGGGG-----GCHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCHHC-----CCHHHHHHHHHHHHHHH-H
T ss_conf 9999999999999859972029999999988999999999998621-----71420-----58389999999996539-9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC--------CHH-----HHHHHHHHHHHHHHHH-----CHH------HH
Q ss_conf 78898888548999998999999999731104--------128-----9999999999999975-----020------46
Q 001789 667 LPTNPAGDDPIFALLRVFWPMLEKLFRSEHME--------NGN-----LSTAACRALSLAIQSS-----GQH------FV 722 (1013)
Q Consensus 667 ~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~--------~~~-----v~e~~c~~~k~~i~~~-----~~~------~~ 722 (1013)
.+.+ ..+++.+++..+|+.+..++.. +.+ ++. ...+.||.+|+.+-.+ +.. ..
T Consensus 700 v~~~--~g~~f~~~~~~i~~~~l~~y~~-~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~ 776 (1073)
T 3gjx_A 700 ACKA--VGHPFVIQLGRIYLDMLNVYKC-LSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAE 776 (1073)
T ss_dssp HHHH--HCGGGHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHH--CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 8845--6525799999999999999999-999999999827841122599999899999999999999814797899999
Q ss_pred HHHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 528999999997442107---76317877699999806899860159999999766788998615798998974699999
Q 001789 723 TLLPQVLDCLSTNFVSFQ---NHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYT 799 (1013)
Q Consensus 723 ~~l~~i~~~l~~~f~~~~---~~~~~L~l~~~li~~~~~~~~~~~~i~~l~~~l~~~t~l~~l~~~~~~~~~pDi~~~~f 799 (1013)
.++||+++.++.+|..+. ++|++|++.+++|..+|. ...+.+..+++.+.++| +.++.+ ++++|||++.+||
T Consensus 777 ~~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~--~~~~~~~~il~~vf~~T-l~mi~~--~f~~~Pe~r~~ff 851 (1073)
T 3gjx_A 777 NFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGG--HITAEIPQIFDAVFECT-LNMINK--DFEEYPEHRTNFF 851 (1073)
T ss_dssp HTSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGG--GTGGGHHHHHHHHHHHH-HHHHSS--CSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHH-HHHHHC--CCCCCCHHHHHHH
T ss_conf 867899999999885388531369999999999999886--54044899999999999-999867--7312968899999
Q ss_pred HHHHHHHHHHHHHHHHCCHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99999997725998710202229999999987225873589999999999874343210488999998515999999997
Q 001789 800 NFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVIS 879 (1013)
Q Consensus 800 ~l~~~~l~~~p~~~~~~~~~~l~~i~~~~l~~l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (1013)
+|+.+++.+||..+++.|++.+..++++++|++++.+|++..++++++.+++..... + .+..+++++
T Consensus 852 ~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~------~-------~~~~~~F~~ 918 (1073)
T 3gjx_A 852 LLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQ------E-------EAAAQSFYQ 918 (1073)
T ss_dssp HHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTT------C-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC------C-------HHHHHHHHH
T ss_conf 999999997769998399999999999999991899716999999999999997624------8-------499999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCHHCCCC--HHC--CCCHHHHHHHHHHHHC-CCCCCCCCCHHH
Q ss_conf 30199999999982378865431025699999998700100010--000--1687989889999850-189544790100
Q 001789 880 HSGEGLVSNVVYALLGVSAMSRVHKCATILQQLAAICSISERTS--GKA--ILSWESLQGWLHSAVQ-VLPAEYLKQGET 954 (1013)
Q Consensus 880 ~~g~~Lv~~ll~~l~g~~~rs~~~~~~~iL~~l~~~~~~~~~~~--~~~--~~~~~~~~~wl~~~l~-~~p~~~v~~~~~ 954 (1013)
.|+..++..+|..+++..|+|++..++.+|+.|+.....+.... +.. ..|...+++|+.+.|. +||+ +++++.
T Consensus 919 ~~~~~~~~~i~~v~td~~h~~~f~~q~~il~~l~~~~~~~~i~~~l~~~~~~~n~~~~~~~~~~~l~~~fp~--~~~~qi 996 (1073)
T 3gjx_A 919 TYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEGKISTPLNPGNPVNNQMFIQDYVANLLKSAFPH--LQDAQV 996 (1073)
T ss_dssp HHHHHHHHHHHHHHTCTTCGGGHHHHHHHHHHHHHHHTTTCCSCSSSCTTTTCHHHHHHHHHHHHHHHHCTT--SCHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC--CCHHHH
T ss_conf 999999999999971826763104799999999999982773556666678765899999999999974799--999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 4631899999964434211002248999887765666514899999999874007
Q 001789 955 ETLPPVWLKALAGAASDYLESMSCNGGNSNYGHMQGKGGRVLKRIIREFADSHRN 1009 (1013)
Q Consensus 955 ~~F~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~F~~~crg 1009 (1013)
+.|++.+++. ..+..+||.++|||.++.|-
T Consensus 997 ~~fv~~l~~~-------------------------~~d~~~f~~~lrDFli~~ke 1026 (1073)
T 3gjx_A 997 KLFVTGLFSL-------------------------NQDIPAFKEHLRDFLVQIKE 1026 (1073)
T ss_dssp HHHHHHHHHS-------------------------TTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHH-------------------------CCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999980-------------------------28899999999999999999
No 2
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=1.00 E-value=1 Score=853.08 Aligned_cols=906 Identities=14% Similarity=0.168 Sum_probs=718.5
Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 41799999999996049995879999999999711948999999965359878776302789877989999823788889
Q 001789 3 MDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQ 82 (1013)
Q Consensus 3 ~~~~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~w~~l~ 82 (1013)
||+ +.++++|.++|++++ ..|++|++||++||++|++|..|..+|+.+ .+.++|||||++|+++|+++|+.+|
T Consensus 13 ~dv-~~Le~av~~ly~p~~-~~r~~A~~~L~~~q~sp~aw~~~~~iL~~s-----~~~~vR~faa~~Lk~~I~~~W~~L~ 85 (1023)
T 4hat_C 13 LDI-ALLDQVVSTFYQGSG-VQQKQAQEILTKFQDNPDAWQKADQILQFS-----TNPQSKFIALSILDKLITRKWKLLP 85 (1023)
T ss_dssp CCH-HHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHCTTGGGGHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred CCH-HHHHHHHHHHHCCCH-HHHHHHHHHHHHHHCCCCHHHHHHHHHCCC-----CCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999-999999999849995-999999999999871954888999995389-----9889999999999999976111299
Q ss_pred HHHHHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHHHCHHC--CCCCHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 478999999999999982379------97999999999999980412--5675599999994103589840499999972
Q 001789 83 SAAKDALLNALLVAAKRFSSG------PPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLT 154 (1013)
Q Consensus 83 ~e~~~~lr~~Ll~~l~~~~~~------~~~v~~kL~~aLa~l~~~~~--~W~~~i~~li~~l~~~~~~~~~~~~lL~iL~ 154 (1013)
++++..||+.|++++.++..+ ++.+++|+|.+++.++++.+ .||+++++++..+++ ++..++++|.+|+
T Consensus 86 ~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~---~~~~~~~~L~iL~ 162 (1023)
T 4hat_C 86 NDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSS---SVNVCENNMIVLK 162 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTT---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHCHHHHHHHHHHHCC---CHHHHHHHHHHHH
T ss_conf 9999999999999999865785222231999999999999999985733232899999998569---9778999999999
Q ss_pred HCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 10000012465556789678999999997403699999999562014899976215648999999999986036665571
Q 001789 155 VLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQ 234 (1013)
Q Consensus 155 ~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~ 234 (1013)
.|+||+.+....+ ++..||..+++.+...++.|+.++..+++... +.++...+|+|+.+|+. |+|.
T Consensus 163 ~L~EEV~~~~~~~--l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~-------~~~l~~~~L~~l~s~l~-----WI~i 228 (1023)
T 4hat_C 163 LLSEEVFDFSAEQ--MTQAKALHLKNSMSKEFEQIFKLCFQVLEQGA-------SSSLIVATLESLLRYLH-----WIPY 228 (1023)
T ss_dssp HHHHHHHTSCTTT--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-------SCHHHHHHHHHHHHHTT-----TSCT
T ss_pred HHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHH-----HCCH
T ss_conf 9999998710000--15999888999999989999999999982789-------88999999999999998-----4899
Q ss_pred CHHCCCCHHHHHH-HHCCCCCCHHHHHHHHHHHHHCCC--C---HHHH---HHHH------------HHHHHHHHHCCCC
Q ss_conf 0110121599999-731698818999999999951488--9---4698---9864------------3423875100000
Q 001789 235 GSLAAHPLLNFVF-NSLQVQSSFDVAIEVLVELVGRHE--G---LPQA---LLCR------------VPFLKELLLLPAL 293 (1013)
Q Consensus 235 ~~~~~~~ll~~l~-~~L~~~~~~~~a~~~l~eii~~~~--~---~~~~---l~~~------------~~~l~~~~~~~~~ 293 (1013)
+.+..+++++.+| ++|.+++++++|++|+++++++.. + +.+. +++. ...+++.+. ..
T Consensus 229 ~~i~~~~ll~~l~~~~L~~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~--~~ 306 (1023)
T 4hat_C 229 RYIYETNILELLSTKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYA--NA 306 (1023)
T ss_dssp HHHHSSSHHHHHHTHHHHSHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHH--HT
T ss_pred HHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH--CC
T ss_conf 8751444999999987698788999999999998042578557788999999999999999973797412899986--26
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCH--HH-HHHHHHHHHCCCCCCCCCHHHHHCHHHHHHHHHHHHCCCHHHHH
Q ss_conf 4783889927999999997864599981693--48-99999998000688877303440099999999887003234544
Q 001789 294 TDGDEKVIGGLACLMSEIGQAAPSLIVEASP--EA-LALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAK 370 (1013)
Q Consensus 294 ~~~d~~~~~~l~~l~~~~~e~~~~~l~~~~~--~~-~~ll~~ll~~~~~p~~d~~v~~~~l~FW~~l~~~l~~~~~~~~~ 370 (1013)
.++|.++++++|++|+++|++|..++.+++. .. ...++.|+.|+.++ |++++++|++||+.|++++++.
T Consensus 307 ~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~--d~ei~~~tl~FW~~L~~~l~~e------ 378 (1023)
T 4hat_C 307 NGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE--ERELFKTTLDYWHNLVADLFYE------ 378 (1023)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHHHHHHHTTS------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHC------
T ss_conf 63119999999999999999999998679103589999999999861899--2889999999999999999856------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC---C--CCC------CCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 4343445218899999999998606689988---8--989------8888633999999999999999885070679999
Q 001789 371 NKKHVEDMFFSVFSALLDALLLRAQVDESSF---N--DDG------MVDLPDGLVQFRMNLVELLVDICQLLRSATFIQK 439 (1013)
Q Consensus 371 ~~~~~~~~~~~~~~~L~~~l~~k~~~p~~~~---~--~~~------~~d~~d~f~~fR~~~~D~l~~~~~il~~~~~l~~ 439 (1013)
+.+...|+|+|.+|+.++++||+||+++. + ++| +.|+.+.|+.|| |+|.+++.+.|++ ++..
T Consensus 379 --~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~R----d~L~~l~~l~~~~-~~~~ 451 (1023)
T 4hat_C 379 --PLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSER----EVLVYLTHLNVID-TEEI 451 (1023)
T ss_dssp --TTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHH----HHHHHHHHHCHHH-HHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHH----HHHHHHHCCCHHH-HHHH
T ss_conf --57888899999999999998657982026677888608887144558899999999----9999986068789-9999
Q ss_pred HHHHHHCC-CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98633139-99998830345899988742210134687666478999999831685355556799999889999984188
Q 001789 440 VFFGSWGS-ANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSK 518 (1013)
Q Consensus 440 ~~~~~~~~-~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~ 518 (1013)
++..+... .+.+++|+.+||++||+|+|++++.++.....++.++..+..++++...+.. .+++..|+|+++|+|++
T Consensus 452 ~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~--k~~v~~t~~~~lGry~~ 529 (1023)
T 4hat_C 452 MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDN--KAVVASDIMYVVGQYPR 529 (1023)
T ss_dssp HHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHH--HHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC--HHHHHHHHHHHHHHHHH
T ss_conf 9999999854887888999899999999976898155788899999999975410346762--59999999999999999
Q ss_pred HHHHCHHCHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHCCCCC------CCCHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 8986533249999999981176--832799999999999993200499------75089999999988726999452999
Q 001789 519 WISAFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALIDE------PSNLEILMWIGEALEKRHLPLEDEEE 590 (1013)
Q Consensus 519 wl~~~p~~L~~vl~~l~~~l~~--~~v~~~Aa~al~~lc~~c~~~l~~------~~~~~~l~~~~~~l~~~~l~~~~~~~ 590 (1013)
|+..||++|++++++++++|++ |+++.+||.||++||++|+.++.. .++++.+...+... ...++...+..
T Consensus 530 wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~-~~~l~~~~~~~ 608 (1023)
T 4hat_C 530 FLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKT-TADLQPQQVHT 608 (1023)
T ss_dssp HHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHH-HTTSCHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH-HHHCCHHHHHH
T ss_conf 98616798999999999986169878999999999999999888761357777860699999999999-88479888999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99999999715990788999999987999999996640269987777961367777777887875210013335567889
Q 001789 591 VVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTN 670 (1013)
Q Consensus 591 l~eai~~ii~~lp~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~ 670 (1013)
+|||+|.+++++|+++.+..+++.++.|+.+.|+++..+.. .++..+.. ...++++..+++.... ...+
T Consensus 609 lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~-----~~~~~~~d-----~~~~~~l~~il~~~~~-v~~~ 677 (1023)
T 4hat_C 609 FYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQST-----ANPTLLLD-----SETVKIIANIIKTNVA-VCTS 677 (1023)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHH-----HCTTGGGC-----HHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCHHHCC-----HHHHHHHHHHHHHHHH-HHHH
T ss_conf 99999999985887744899999998858999999999872-----27254128-----7889999999999999-9998
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCC--------CHHH-----HHHHHHHHHHHHHHHCH-H----------HHHHHH
Q ss_conf 8888548999998999999999731104--------1289-----99999999999997502-0----------465289
Q 001789 671 PAGDDPIFALLRVFWPMLEKLFRSEHME--------NGNL-----STAACRALSLAIQSSGQ-H----------FVTLLP 726 (1013)
Q Consensus 671 ~~~~~p~~~~~~~i~~~l~~i~~~~~~~--------~~~v-----~e~~c~~~k~~i~~~~~-~----------~~~~l~ 726 (1013)
..+++.++++.+|+.+..+++. +.+ ++.+ ..+.|+++|+.+-.+-. + ...++|
T Consensus 678 --lg~~f~~~~~~i~~~~l~~y~~-~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~ 754 (1023)
T 4hat_C 678 --MGADFYPQLGHIYYNMLQLYRA-VSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVE 754 (1023)
T ss_dssp --HGGGGHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHH
T ss_pred --HCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf --2688999999999999999999-9999999998479425316888888999999999999999627988999998678
Q ss_pred HHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99999997442107---763178776999998068998601599999997667889986157989989746999999999
Q 001789 727 QVLDCLSTNFVSFQ---NHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFAS 803 (1013)
Q Consensus 727 ~i~~~l~~~f~~~~---~~~~~L~l~~~li~~~~~~~~~~~~i~~l~~~l~~~t~l~~l~~~~~~~~~pDi~~~~f~l~~ 803 (1013)
++++.++.+|..+. ++|++|++.+++|..+|. .+.+.+..+++.+.++| +.++.+ ++++|||++.+||+|+.
T Consensus 755 ~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~--~~~~~~~~il~~vf~~T-l~mi~~--~~~~~Pe~r~~ff~ll~ 829 (1023)
T 4hat_C 755 PLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGH--MIPQGVILILQSVFECT-LDMINK--DFTEYPEHRVEFYKLLK 829 (1023)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGG--GCHHHHHHHHHHHHHHH-HHHHSS--CSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHC--CCCCCHHHHHHHHHHHH
T ss_conf 89999998887287201038899999999998877--41015689999999999-999855--62229498999999999
Q ss_pred HHHHHHHHHHHHCCHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99977259987102022299999999872258735899999999998743432104889999985159999999973019
Q 001789 804 TFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGE 883 (1013)
Q Consensus 804 ~~l~~~p~~~~~~~~~~l~~i~~~~l~~l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 883 (1013)
+++++||..+++.|++.+..++++++||++++||++..++++|+.+++.....+ ++ .+..+++++.|+.
T Consensus 830 ~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~----~~-------~~~~~~f~~~~~~ 898 (1023)
T 4hat_C 830 VINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERM----GN-------VPFANEFHKNYFF 898 (1023)
T ss_dssp HHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH----CS-------SHHHHHHHHHHHH
T ss_pred HHHHHCHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC----CC-------HHHHHHHHHHHHH
T ss_conf 999977699974999999999999999808995589999999999999987745----78-------4899999999999
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCHHCCCC--H------HCCCCHHHHHHHHHHHHC-CCCCCCCCCHHH
Q ss_conf 9999999982378865431025699999998700100010--0------001687989889999850-189544790100
Q 001789 884 GLVSNVVYALLGVSAMSRVHKCATILQQLAAICSISERTS--G------KAILSWESLQGWLHSAVQ-VLPAEYLKQGET 954 (1013)
Q Consensus 884 ~Lv~~ll~~l~g~~~rs~~~~~~~iL~~l~~~~~~~~~~~--~------~~~~~~~~~~~wl~~~l~-~~p~~~v~~~~~ 954 (1013)
.++..+|..+++..|+|++..++.+|+.|+.....+.... + .+..|...+++|+.+.|. +||+ +++++.
T Consensus 899 ~~~~~~~~v~td~~h~~~f~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~fp~--~~~~qi 976 (1023)
T 4hat_C 899 IFVSETFFVLTDSDHKSGFSKQALLLMKLISLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFPH--LTSEQI 976 (1023)
T ss_dssp HHHHHHHHHHHSSSCGGGHHHHHHHHHHHHHHHHTTCCCSCSSCTTSSCTTCCHHHHHHHHHHHHHHHHCTT--SCHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC--CCHHHH
T ss_conf 999999999838516531899999999999999738713446772226888744999999999999874899--999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 4631899999964434211002248999887765666514899999999874007
Q 001789 955 ETLPPVWLKALAGAASDYLESMSCNGGNSNYGHMQGKGGRVLKRIIREFADSHRN 1009 (1013)
Q Consensus 955 ~~F~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~F~~~crg 1009 (1013)
..|++.+++. .++..+||.++|||.++.|-
T Consensus 977 ~~fv~~l~~~-------------------------~~~~~~f~~~lrdfli~~ke 1006 (1023)
T 4hat_C 977 ASFLSALTKQ-------------------------CKDLVVFKGTLRDFLVQIKE 1006 (1023)
T ss_dssp HHHHHHHHHT-------------------------TTCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHC-------------------------CCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999973-------------------------39999999999998687676
No 3
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=843.24 Aligned_cols=906 Identities=16% Similarity=0.277 Sum_probs=738.0
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 99999999996049995879999999999711948999999965359878776302789877989999823788889478
Q 001789 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA 85 (1013)
Q Consensus 6 ~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~w~~l~~e~ 85 (1013)
.++++++++++| ++|++.|++|++||++||++|++|.+|..||..+ .+.++|||||++|+++|+++|..+|+++
T Consensus 6 ~~~l~~~l~~~~-~~d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~~-----~~~~vr~~aa~~L~~~i~~~w~~l~~~~ 79 (971)
T 2x1g_F 6 IARLEEAVVSFY-RSNSQNQAITHEWLTDAEASPQAWQFSWQLMQLG-----KSQEVQFFGAITLHSKLMKHWHEVPPEN 79 (971)
T ss_dssp -----CTHHHHH-TSTTTC----CHHHHHTTTSTHHHHHHHHHTCTT-----SCHHHHHHHHHHHHHHHHHCGGGCCGGG
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHCCHHHCCHHH
T ss_conf 999999999876-9999999999999999874979899999998359-----9498999999999999971586499999
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHC-CCCCHHHHHHHHHHCCCC----CCCCHHHHHHHHHHCHHCC
Q ss_conf 99999999999998237997999999999999980412-567559999999410358----9840499999972100000
Q 001789 86 KDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV-EHGKPIEKLFYSLQNLQS----QDNGNMAVLEMLTVLPEEV 160 (1013)
Q Consensus 86 ~~~lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~~~~~-~W~~~i~~li~~l~~~~~----~~~~~~~lL~iL~~l~EE~ 160 (1013)
+..+|+.|++++.....+++.|++|+|.+++.++.+.+ .||+++++++..++++.. ++..++..+++|+.++||+
T Consensus 80 ~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi 159 (971)
T 2x1g_F 80 REELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLGEWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEA 159 (971)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTCC------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999998679987899999999999999706224379999999971533456787889999999999859988
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCC
Q ss_conf 12465556789678999999997403699999999562014899976215648999999999986036665571011012
Q 001789 161 IDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAH 240 (1013)
Q Consensus 161 ~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~~~~~ 240 (1013)
...+ +..+|..+++.+...++.|+.++.+++....+++.......+...+++|+.+|+.++ |+|.+ ...
T Consensus 160 ~~~~------~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~---~ip~~--~~~ 228 (971)
T 2x1g_F 160 QVIH------TSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNI---GYTIE--GCV 228 (971)
T ss_dssp HHCC------CSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHS---CCCGG--GHH
T ss_pred HCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHC---CCCCC--CCC
T ss_conf 2468------578999999999987999999999998554678888642367999999999998257---83865--663
Q ss_pred CHHHHHHHHC------------------CCCCCHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 1599999731------------------698818999999999951488-----94698986434238751000004783
Q 001789 241 PLLNFVFNSL------------------QVQSSFDVAIEVLVELVGRHE-----GLPQALLCRVPFLKELLLLPALTDGD 297 (1013)
Q Consensus 241 ~ll~~l~~~L------------------~~~~~~~~a~~~l~eii~~~~-----~~~~~l~~~~~~l~~~~~~~~~~~~d 297 (1013)
++++.+|. | .+++.++.|++|+.++++..+ +.+..+++.+.++...+. ++..++|
T Consensus 229 ~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~d 306 (971)
T 2x1g_F 229 TITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEIT-KTEWKRE 306 (971)
T ss_dssp HHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHH-HHHSSSS
T ss_pred CHHHHHHH-HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHCCC
T ss_conf 19999986-435530232356655567677479999999999997680113208899999999998689999-9985656
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHH----H----CCHHHHHHHHHHHHCCCCCC---CCCHHHHHCHHHHHHHHHHHHC
Q ss_conf 8---8992799999999786459998----1----69348999999980006888---7730344009999999988700
Q 001789 298 E---KVIGGLACLMSEIGQAAPSLIV----E----ASPEALALADALLSCVAFPS---EDWEIADSTLQFWSTLASYILG 363 (1013)
Q Consensus 298 ~---~~~~~l~~l~~~~~e~~~~~l~----~----~~~~~~~ll~~ll~~~~~p~---~d~~v~~~~l~FW~~l~~~l~~ 363 (1013)
. +....+|++++.+++.+...+. + .++.+..+++.|+.++.+|| .|++++..+++||+.+.+.+.+
T Consensus 307 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~ 386 (971)
T 2x1g_F 307 NDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFA 386 (971)
T ss_dssp CSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 54068999999999999999999999873157653549999999999999758888886312458789999999999974
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 3234544434344521889999999999860668998-889898888633999999999999999885070679999986
Q 001789 364 LDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESS-FNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFF 442 (1013)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~~~-~~~~~~~d~~d~f~~fR~~~~D~l~~~~~il~~~~~l~~~~~ 442 (1013)
++.+. +.......++|+|.+++.+++.|+.||+++ +. +|+.+|+++|.+||+.++|++.+++.++|.+ ++..++.
T Consensus 387 ~~~~~--~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~-~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~-~l~~~~~ 462 (971)
T 2x1g_F 387 MSNDE--QKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLA-KWSSDDLECFRCYRQDISDTFMYCYDVLNDY-ILEILAA 462 (971)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTS-CSCHHHHHHHHHHHHHHHHHHHHHHTTCTTH-HHHHHHH
T ss_pred CCCCC--CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_conf 13310--008999999999999999999986199962433-5677579999999999999999999997099-9999999
Q ss_pred HHH----CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 331----399999883034589998874221013468766647899999983168-535555679999988999998418
Q 001789 443 GSW----GSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSAS-RSEELKGFMHIVYRSLADVIGSYS 517 (1013)
Q Consensus 443 ~~~----~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~-~~~~~~~~~~v~~~t~~~~ig~y~ 517 (1013)
.+. .....+.+|+.+||++|+++++++++.++.. ..++.+++++..++.. +++ .+|.++ |+++|+|+
T Consensus 463 ~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~-~~l~~l~~~l~~l~~~d~~~------~vr~~a-~~~l~~~~ 534 (971)
T 2x1g_F 463 MLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK-RQIPRLMRVLAEIPYEKLNV------KLLGTA-LETMGSYC 534 (971)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-------CHHHHHHHHHHHSCTTTSCH------HHHHHH-HHHHHHTH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHCCCCCCCH------HHHHHH-HHHHHHHH
T ss_conf 99999973468987389999999999999835480334-77999999998567653678------999999-99999878
Q ss_pred HHHHHCHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH-HHHHHCCCCHHHHHHHHHHHH
Q ss_conf 8898653324999999998117683279999999999999320049975089999999-988726999452999999999
Q 001789 518 KWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIG-EALEKRHLPLEDEEEVVGAIS 596 (1013)
Q Consensus 518 ~wl~~~p~~L~~vl~~l~~~l~~~~v~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~-~~l~~~~l~~~~~~~l~eai~ 596 (1013)
+|+..||+++++++++++.+++ |.|+.+||.||.+||++|+..+. | +++.+++.+ ..+.++.++.+.+..+++++|
T Consensus 535 ~~l~~~~~~l~~vl~~l~~~l~-~~v~~~A~~al~~l~~~~~~~l~-p-~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~ 611 (971)
T 2x1g_F 535 NWLMENPAYIPPAINLLVRGLN-SSMSAQATLGLKELCRDCQLQLK-P-YADPLLNACHASLNTGRMKNSDSVRLMFSIG 611 (971)
T ss_dssp HHHC----CHHHHHHHHHHHHH-SSCHHHHHHHHHHHHHHCHHHHH-H-HHHHHHHHHHHHHHSTTSCHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHCC-C-CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 8886088989999999998748-58899999999999999888623-0-0799999999997278999289999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC---C
Q ss_conf 9971599078899999998799999999664026998777796136777777788787521001333556788988---8
Q 001789 597 LILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPA---G 673 (1013)
Q Consensus 597 ~ii~~lp~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~---~ 673 (1013)
.+++++|.++ ...++..++.|+++.|+++.+.... ++.. .......+.+++.+++++....+.... .
T Consensus 612 ~i~~~~~~~~-~~~~~~~ll~~l~~~l~~~~~~~~~-----~~~~----~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~ 681 (971)
T 2x1g_F 612 KLMSLLRPEE-IPKYLDIIVSPCFEELQAICQADSK-----TPAA----RIRTIFRLNMISTLFSSLNTDVDEQATDQPI 681 (971)
T ss_dssp HHHHTSCTTH-HHHHHHHHHHHHHHHHHHHHTC--------CHHH----HHHHHHHHHHHHHHHHHHTC-----------
T ss_pred HHHHHCCHHH-HHHHHHHHHHHHHHHHHHHHHCCCC-----CHHH----HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 9997299999-9999999998999999999856899-----8225----9999999999999984167776853334567
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 85489999989999999997311041289999999999999975020465289999999974421077631787769999
Q 001789 674 DDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVI 753 (1013)
Q Consensus 674 ~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~k~~i~~~~~~~~~~l~~i~~~l~~~f~~~~~~~~~L~l~~~li 753 (1013)
.+++.++++.+||++..++.. +..+.+++|++|++++++++.+|..+.|++|++++++...|... +++|+|++++.++
T Consensus 682 ~~~~~~~~~~i~~~l~~~l~~-~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~-~~~~~l~l~~~~i 759 (971)
T 2x1g_F 682 VQPVLLVMQRTMPIFKRIAEM-WVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTR-CCAPTLEISKTAI 759 (971)
T ss_dssp --CCHHHHHTTHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC---CCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
T ss_conf 883699999999999999986-43637899999999999998614404252789999999998668-8349999999999
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHC-HHHHHHHHHH
Q ss_conf 98068998601599999997667889986157--98998974699999999999977259987102022-2999999998
Q 001789 754 EEFGHKDEYGPLFVTTFERFSQAASVRALNSS--YICDQEPDLVEAYTNFASTFVRTSRKEVLAASGAL-LEVSFQKAAI 830 (1013)
Q Consensus 754 ~~~~~~~~~~~~i~~l~~~l~~~t~l~~l~~~--~~~~~~pDi~~~~f~l~~~~l~~~p~~~~~~~~~~-l~~i~~~~l~ 830 (1013)
..||.++.+.+.+.+++..++.++ +..+.+. .+++++||++++||+|+.+++++||..++++ +. ++.++++++.
T Consensus 760 ~~~~~~~~~~~~l~~~~~~~~~~~-~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s--~~~l~~i~~~~~~ 836 (971)
T 2x1g_F 760 VMFFKDEGCKPLMQQLLREFIQHS-FKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDK--TLAYDRLVFYAQR 836 (971)
T ss_dssp TTCCC-----HHHHHHHHHHHHHH-HHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCT--TSCHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHH-HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHCCC--CCCHHHHHHHHHH
T ss_conf 995889005899999999999999-9998606546776484489999999999998685998188--2128999999999
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 72258735899999999998743432104889999985159999999973019999999998237886543102569999
Q 001789 831 CCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVHKCATILQ 910 (1013)
Q Consensus 831 ~l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lv~~ll~~l~g~~~rs~~~~~~~iL~ 910 (1013)
+++++|+++.+++++||+.++++.. . .+.+++++.++|+.|+..++.+++|..||+.+++++++|+
T Consensus 837 ~l~~~~~~~~~s~~~fl~~~i~~~~-------~-------~~~~~~~~~~~g~~l~~~l~~~~~~~~~~s~~~~~a~~l~ 902 (971)
T 2x1g_F 837 GMTLPESGAIRNSIQFLTHFVMQSR-------N-------HAHVTEVVLATGEQTLYTAMMCVGYLTPRSQVDKFADILL 902 (971)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHT-------T-------CHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGGGGHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHCCC-------C-------HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 8287877899999999999986078-------5-------6899999999679999999997564697567899999999
Q ss_pred HHHHHHCHHCCCCHHCCCCHHHHHHHHHHHHC--CCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99987001000100001687989889999850--1895447901004631899999964434211002248999887765
Q 001789 911 QLAAICSISERTSGKAILSWESLQGWLHSAVQ--VLPAEYLKQGETETLPPVWLKALAGAASDYLESMSCNGGNSNYGHM 988 (1013)
Q Consensus 911 ~l~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~--~~p~~~v~~~~~~~F~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 988 (1013)
++..++| ..+++||.+++. .||+..+++++|++|++++++.
T Consensus 903 ~l~~~~~-------------~~~~~~l~~~l~~~~~p~~~~~~~~~~~f~~~l~~~------------------------ 945 (971)
T 2x1g_F 903 AMNRKYA-------------AEMAVWMKSLMSTPNFPTQLITDADKTRYTALIIKE------------------------ 945 (971)
T ss_dssp HHHHHHH-------------HHHHHHHHHHHTSSSCSCSSSCHHHHHHHHHHHHHC------------------------
T ss_pred HHHHHCC-------------HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH------------------------
T ss_conf 9999785-------------999999999826368998769999999999999998------------------------
Q ss_pred CCC-CCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 666-5148999999998740077789
Q 001789 989 QGK-GGRVLKRIIREFADSHRNVNLT 1013 (1013)
Q Consensus 989 ~~~-~~r~~~~~~~~F~~~crg~~~~ 1013 (1013)
| ++|+||+.+||||..|||+.-|
T Consensus 946 --~~~~r~~~~~~~~f~~~~r~~~~~ 969 (971)
T 2x1g_F 946 --KVNKRLLQQHLSEMAMKTRGLTEK 969 (971)
T ss_dssp --SSCHHHHHHHHHHHHHHHHC----
T ss_pred --HHCHHHHHHHHHHHHHHHCCCCCC
T ss_conf --847176999999999998074466
No 4
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=1.00 E-value=1 Score=804.19 Aligned_cols=899 Identities=21% Similarity=0.342 Sum_probs=729.2
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 79999999999604999587999999999971194899999996535987877630278987798999982378888947
Q 001789 5 LQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSA 84 (1013)
Q Consensus 5 ~~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~w~~l~~e 84 (1013)
..+++.++++++|.++|++.|++|++||++||++|++|.+|..+|..+ .+.++|||||++|+++|+++|+.+|++
T Consensus 22 ~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~~-----~~~~vr~~aa~~L~~~i~~~w~~l~~~ 96 (963)
T 2x19_B 22 TVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPD-----KVPEIQYFGASALHIKISRYWSDIPTD 96 (963)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTSTT-----SCHHHHHHHHHHHHHHHHHCGGGSCGG
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC-----CCHHHHHHHHHHHHHHHHHCHHHCCHH
T ss_conf 599999999998359798999999999999846999999999986579-----725889999999999997388749999
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHC--CCCCHHHHHHHHHHCCCC---CCCCHHHHHHHHHHCHHC
Q ss_conf 899999999999998237997999999999999980412--567559999999410358---984049999997210000
Q 001789 85 AKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQS---QDNGNMAVLEMLTVLPEE 159 (1013)
Q Consensus 85 ~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~~~~~--~W~~~i~~li~~l~~~~~---~~~~~~~lL~iL~~l~EE 159 (1013)
++..+|+.|++++....++++.|++|+|.+++.++.+.+ .||+++++++..+++..+ ++..+..++.+|+.++||
T Consensus 97 ~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee 176 (963)
T 2x19_B 97 QYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEE 176 (963)
T ss_dssp GHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHH
T ss_conf 99999999999999874898899999999999999874831155599999999864335787478899999999868998
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCC
Q ss_conf 01246555678967899999999740369999999956201489997621564899999999998603666557101101
Q 001789 160 VIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAA 239 (1013)
Q Consensus 160 ~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~~~~ 239 (1013)
+.+.+ .+..+|..+++.+...++.|+.++.+++....+ +..+...+++|+.+|+..+. +. ...
T Consensus 177 ~~~~~-----~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~------~~~~~~~~l~~l~~wi~~~~----~~--~~~ 239 (963)
T 2x19_B 177 FQTSR-----LPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSS------PSCVRQKVLKCFSSWVQLEV----PL--QDC 239 (963)
T ss_dssp HTTCC-----C---------CCSGGGHHHHHHHHHHHHSCTTC------CHHHHHHHHHHHHHHHTSSC----CG--GGT
T ss_pred HHCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------CHHHHHHHHHHHHHHHCCCC----CC--CCC
T ss_conf 85065-----869999999999998788999999999827788------05799999999999982899----85--341
Q ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 215999997316988189999999999514889-----469898643423875100000478388992799999999786
Q 001789 240 HPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEG-----LPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQA 314 (1013)
Q Consensus 240 ~~ll~~l~~~L~~~~~~~~a~~~l~eii~~~~~-----~~~~l~~~~~~l~~~~~~~~~~~~d~~~~~~l~~l~~~~~e~ 314 (1013)
.++++.+|+++.+++.++.|++|+.++++.++. ....+++.++...+.+. .+..++|.+..+++|++|+++++.
T Consensus 240 ~~ll~~l~~~l~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~~~~~~~ 318 (963)
T 2x19_B 240 EALIQAAFAALQDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLR-QAVQNGDMETSHGICRIAVALGEN 318 (963)
T ss_dssp HHHHHHHHHHTTSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHH-HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 6899999998679647999999999997531124577999999999974079999-999877989999999999999998
Q ss_pred HHHHHHHC---CHHHHHHHHHHHHCCCCCC---CCCHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45999816---9348999999980006888---77303440099999999887003234544434344521889999999
Q 001789 315 APSLIVEA---SPEALALADALLSCVAFPS---EDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLD 388 (1013)
Q Consensus 315 ~~~~l~~~---~~~~~~ll~~ll~~~~~p~---~d~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 388 (1013)
+...+.++ ++.+..+++.++.++.+|| .|++++..+++||+.+.+.+..++.. .++.....++|++.+++.
T Consensus 319 ~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~---~~~~~~~~~~~~l~~l~~ 395 (963)
T 2x19_B 319 HSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAE---KQAVYQQVYRPVYFQLVD 395 (963)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_conf 69999737556589999999999997588888720345441299999999999862344---457889999999999999
Q ss_pred HHHHHCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH---HHCCCCCCCCCHHHHHHHHHH
Q ss_conf 999860668998-8898988886339999999999999998850706799999863---313999998830345899988
Q 001789 389 ALLLRAQVDESS-FNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFG---SWGSANVPIPWKEVETKLFAL 464 (1013)
Q Consensus 389 ~l~~k~~~p~~~-~~~~~~~d~~d~f~~fR~~~~D~l~~~~~il~~~~~l~~~~~~---~~~~~~~~~~W~~~Ea~L~~l 464 (1013)
+++.||.||+++ +. +|+.|++++|++||++++|++.+++.+.|.+ ++..++.. .......+.+|+.+||++|++
T Consensus 396 ~ll~~~~~p~~~~~~-~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al 473 (963)
T 2x19_B 396 VLLHKAQFPSDEEYG-FWSSDEKEQFRIYRVDISDTLMYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYSWQHTEALLYGF 473 (963)
T ss_dssp HHHHHHSCCCHHHHH-TSCHHHHHHHHHHHHHHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 999998099830226-7776389999999999999999999970689-99999999999997257998667998999999
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCHHHHHHHHHHHCCCCCHH
Q ss_conf 74221013468766647899999983168535555679999988999998418889865332499999999811768327
Q 001789 465 NVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSS 544 (1013)
Q Consensus 465 ~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~~L~~vl~~l~~~l~~~~v~ 544 (1013)
+++++++.++... .++.+++.+..++. ++ +.++.++ ++++|+|++|+..||+++++++++++++|++|.|+
T Consensus 474 ~~i~~~~~~~~~~-~l~~l~~~l~~l~~-~~------~~vr~~~-~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~~~V~ 544 (963)
T 2x19_B 474 QSIAETIDVNYSD-VVPGLIGLIPRISI-SN------VQLADTV-MFTIGALSEWLADHPVMINSVLPLVLHALGNPELS 544 (963)
T ss_dssp HHHTTSCCSSCCS-HHHHHHHHGGGSCC-CS------HHHHHHH-HHHHHHTHHHHHHCHHHHTTTHHHHHHHTTCGGGH
T ss_pred HHHHHHCCCHHHH-HHHHHHHHHHHCCC-CC------HHHHHHH-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHH
T ss_conf 9997043822467-89999999985799-85------8999999-99999888888758898999999999871784689
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH-HHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999320049975089999999-988726999452999999999997159907889999999879999999
Q 001789 545 NACASALRKICEDASALIDEPSNLEILMWIG-EALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAI 623 (1013)
Q Consensus 545 ~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~-~~l~~~~l~~~~~~~l~eai~~ii~~lp~~~~~~~~l~~ll~p~~~~l 623 (1013)
.+||.||.++|++|+..+. | +.+.++..+ ..+.+..++...+..+++++|.++.+.| .+....++..++.|+.+.|
T Consensus 545 ~~A~~al~~l~~~~~~~l~-p-~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~-~~~~~~~~~~l~~~l~~~l 621 (963)
T 2x19_B 545 VSSVSTLKKICRECKYDLP-P-YAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ-VEEILKNLHSLISPYIQQL 621 (963)
T ss_dssp HHHHHHHHHHHHHTGGGCT-T-THHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999899877-6-69999999999863578984889999999999996299-9999999999998999999
Q ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC------------CCCCCHHHHHHHHHHHHHHHH
Q ss_conf 96640269987777961367777777887875210013335567889------------888854899999899999999
Q 001789 624 GKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTN------------PAGDDPIFALLRVFWPMLEKL 691 (1013)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~------------~~~~~p~~~~~~~i~~~l~~i 691 (1013)
+++.+... ++... ......+.+++.+++.+....... ....+|+..+++.+||++..+
T Consensus 622 ~~~~~~~~------~~~~~----~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (963)
T 2x19_B 622 EKLAEEIP------NPSNK----LAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKV 691 (963)
T ss_dssp HHHHSSCS------CHHHH----HHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCC------CHHHH----HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99982789------87789----999999999999997748986433222322124777788994699999999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 97311041289999999999999975020465289999999974421077631787769999980689986015999999
Q 001789 692 FRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFE 771 (1013)
Q Consensus 692 ~~~~~~~~~~v~e~~c~~~k~~i~~~~~~~~~~l~~i~~~l~~~f~~~~~~~~~L~l~~~li~~~~~~~~~~~~i~~l~~ 771 (1013)
+.. |..+.++.|.+|+++++++..++..+.|++|++++.+...|... +.++++++++.++..||.++.+.+.+..++.
T Consensus 692 l~~-~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~-~~~~~l~l~~~li~~f~~~~~~~~~~~~~l~ 769 (963)
T 2x19_B 692 LSK-WLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTI-PQASALDLTRQLVHIFAHEPAHFPPIEALFL 769 (963)
T ss_dssp HHH-HTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHS-CCHHHHHHHHHHHHHHTTCTTTCHHHHHHHH
T ss_pred HHH-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 985-66746899999999999997501034240799999999998757-8508999999999985778013789999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 9766788998615798998974699999999999977259987102022-299999999872258735899999999998
Q 001789 772 RFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGAL-LEVSFQKAAICCTAMHRGAALAAMSYLSCF 850 (1013)
Q Consensus 772 ~l~~~t~l~~l~~~~~~~~~pDi~~~~f~l~~~~l~~~p~~~~~~~~~~-l~~i~~~~l~~l~~~e~~~~~a~~~fl~~l 850 (1013)
.+.+++ +.++.. ++.++||++++||.|+.+++++||..++++ +. +..++++++++++++|+++.+++++||.++
T Consensus 770 ~~~~~~-l~~~~~--~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~--~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l 844 (963)
T 2x19_B 770 LVTSVT-LTLFQQ--GPRDHPDIVDSFMQLLAQALKRKPDLFLCE--RLDVKAVFQCAVLALKFPEAPTVKASCGFFTEL 844 (963)
T ss_dssp HHHHHH-HHHHHH--CTTTCHHHHHHHHHHHHHHHHHCGGGGGCT--TSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHH--CCCCCCHHHHHHHHHHHHHHHHCCHHHCCC--CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 999999-999862--765586389999999999997583987298--514799999999975789779999999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCHHCCCCHHCCCCH
Q ss_conf 74343210488999998515999999997301999999999823788654310256999999987001000100001687
Q 001789 851 LEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVHKCATILQQLAAICSISERTSGKAILSW 930 (1013)
Q Consensus 851 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lv~~ll~~l~g~~~rs~~~~~~~iL~~l~~~~~~~~~~~~~~~~~~ 930 (1013)
++... . ...+++++.++|+.|+..++.+++|..||+.++.++++|+.++.++ +
T Consensus 845 ~~~~~-------~-------~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~il~~l~~~~-------------~ 897 (963)
T 2x19_B 845 LPRCG-------E-------VESVGKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFALNKHC-------------F 897 (963)
T ss_dssp GGGTT-------S-------SCHHHHHTTTSHHHHHHHHHHHHTTTSCGGGHHHHHHHHHHHHHHS-------------H
T ss_pred HHCCC-------C-------HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC-------------H
T ss_conf 85189-------7-------3789999999799999999998533598467788999999999977-------------1
Q ss_pred HHHHHHHHHHHC--CCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 989889999850--189544790100463189999996443421100224899988776566651489999999987400
Q 001789 931 ESLQGWLHSAVQ--VLPAEYLKQGETETLPPVWLKALAGAASDYLESMSCNGGNSNYGHMQGKGGRVLKRIIREFADSHR 1008 (1013)
Q Consensus 931 ~~~~~wl~~~l~--~~p~~~v~~~~~~~F~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~F~~~cr 1008 (1013)
..+++|+.+++. +||+..++++++++|+++++.. .++.|+||+.+||||..||
T Consensus 898 ~~~~~~l~~~l~~~~~p~~~~~~~~~~~f~~~l~~~-------------------------~~~~~~f~~~l~~F~~~~r 952 (963)
T 2x19_B 898 SLLSMWIKEALQPPGFPSARLSPEQKDTFSQQILRE-------------------------RVNKRRVKEMVKEFTLLCR 952 (963)
T ss_dssp HHHHHHHHHHTCSTTSSCTTCCHHHHHHHHHHHTCS-------------------------SCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH-------------------------HCCCHHHHHHHHHHHHHHC
T ss_conf 999999999846368997758999999999999997-------------------------7081889999999999971
Q ss_pred CCCC
Q ss_conf 7778
Q 001789 1009 NVNL 1012 (1013)
Q Consensus 1009 g~~~ 1012 (1013)
|..-
T Consensus 953 ~~~~ 956 (963)
T 2x19_B 953 GLHG 956 (963)
T ss_dssp C---
T ss_pred CCCC
T ss_conf 8557
No 5
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=1.00 E-value=1 Score=746.17 Aligned_cols=895 Identities=12% Similarity=0.128 Sum_probs=667.4
Q ss_pred CHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 417999999999960-4999587999999999971194899999996535987877630278987798999982378888
Q 001789 3 MDLQIKVAQAVHVLN-HDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYL 81 (1013)
Q Consensus 3 ~~~~~~v~~ai~~ly-~~~d~~~~~~A~~~L~~~q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~w~~l 81 (1013)
|+ .++|.+||+..| .++|++.|++|++||++||++|+||++|..+|..+. ..+.++|||||+||++||+ .+
T Consensus 3 m~-~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~---~~~~~vr~fa~~~L~~~I~----~l 74 (980)
T 3ibv_A 3 MS-AQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKT---KYKPSTRLICLQTLSEKVR----EW 74 (980)
T ss_dssp CH-HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTT---TSCHHHHHHHHHHHHHHHH----HC
T ss_pred CC-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHHHH----HC
T ss_conf 99-9999999999848999999999999999998739459999999983799---9989999999999999987----58
Q ss_pred CHH----HHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHCHHC--CCCCHHHHHHHHHHCCCCCC-CCHHHHHHH
Q ss_conf 947----89999999999999823--7997999999999999980412--56755999999941035898-404999999
Q 001789 82 QSA----AKDALLNALLVAAKRFS--SGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQD-NGNMAVLEM 152 (1013)
Q Consensus 82 ~~e----~~~~lr~~Ll~~l~~~~--~~~~~v~~kL~~aLa~l~~~~~--~W~~~i~~li~~l~~~~~~~-~~~~~lL~i 152 (1013)
|++ ++..||+.|++++.+.. .+|++|++|+|.+++.++++.+ .||+++++++..++++ ++ .....+|++
T Consensus 75 ~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~--~~~~~~~~~Lri 152 (980)
T 3ibv_A 75 NNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAAS--SQSEFSNFYLKV 152 (980)
T ss_dssp CTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHH--CCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC--CHHHHHHHHHHH
T ss_conf 820108899999999999999705777867999999999999999868544753999999985689--726899999999
Q ss_pred HHHCHHCCCCCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 721000001246555678967899999999740-3699999999562014899976215648999999999986036665
Q 001789 153 LTVLPEEVIDSQASDCNISSAHRSQYGQELLSH-TPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTE 231 (1013)
Q Consensus 153 L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~-~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~ 231 (1013)
|..++||+.+.+..+......|+..+++.+..+ ++.+++.+...+...... .+..+...+|+|+.+|+. |
T Consensus 153 L~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~----~~~~l~~~~L~~l~s~i~-----w 223 (980)
T 3ibv_A 153 LLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNA----KNYGTVGLCLQVYAQWVS-----W 223 (980)
T ss_dssp HHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHTT-----T
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHH-----H
T ss_conf 9985899972323667887766599999998662889999999999987412----889999999999999986-----5
Q ss_pred CCCCHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHH
Q ss_conf 57101101215999997316988189999999999514889469--8986434238751000004-78388992799999
Q 001789 232 ISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQ--ALLCRVPFLKELLLLPALT-DGDEKVIGGLACLM 308 (1013)
Q Consensus 232 ~~~~~~~~~~ll~~l~~~L~~~~~~~~a~~~l~eii~~~~~~~~--~l~~~~~~l~~~~~~~~~~-~~d~~~~~~l~~l~ 308 (1013)
+|.+.+.++++++.+|++|.+++++++|++|++++++++++-.. .++.. +++.+.+.. ... ++|.|..+++|+++
T Consensus 224 i~~~~i~~~~ll~~l~~~L~~~~~r~~A~ecL~ei~~k~~~~~~k~~li~~-l~L~~~~~~-l~~~~~D~d~~~~la~L~ 301 (980)
T 3ibv_A 224 ININLIVNEPCMNLLYSFLQIEELRCAACETMTEIVNKKMKPLEKLNLLNI-LNLNLFFSK-SQEQSTDPNFDEHVAKLI 301 (980)
T ss_dssp SCHHHHHCHHHHHHHHHHTTSHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH-HHHHHHHCC------CCHHHHHHHHHHH
T ss_pred CCHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH-HHHHHHHHH-HHCCCCCHHHHHHHHHHH
T ss_conf 277865030189999998288677999999999999737895668999999-757999998-744555689999999999
Q ss_pred HHHHHHHHHHHHHCC------------HHHHHHHHHHHHCCCCCCCCCHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 999786459998169------------34899999998000688877303440099999999887003234544434344
Q 001789 309 SEIGQAAPSLIVEAS------------PEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVE 376 (1013)
Q Consensus 309 ~~~~e~~~~~l~~~~------------~~~~~ll~~ll~~~~~p~~d~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~ 376 (1013)
+++|+.+... ...+ +....+++.+|.|++|| +++|+..+++||+.+.+.+...+ .+....
T Consensus 302 ~~~ge~l~~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~--~deVs~~t~~Fw~~~l~~~~~~~-----~~~~~~ 373 (980)
T 3ibv_A 302 NAQGVELVAI-KSDPSELSPELKENCSFQLYNLFPYLIRYLSDD--YDETSTAVFPFLSDLLVSLRKES-----SSKELS 373 (980)
T ss_dssp HHHHHHHHHH-HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCS--SHHHHHTTHHHHHHHHHHHHHHT-----TSCCCC
T ss_pred HHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHCC-----CCCCCC
T ss_conf 9999999987-358655552556668999999999999996798--06399999999999999987244-----223433
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH----HCC--CC
Q ss_conf 52188999999999986066899-888989888863399999999999999988507067999998633----139--99
Q 001789 377 DMFFSVFSALLDALLLRAQVDES-SFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGS----WGS--AN 449 (1013)
Q Consensus 377 ~~~~~~~~~L~~~l~~k~~~p~~-~~~~~~~~d~~d~f~~fR~~~~D~l~~~~~il~~~~~l~~~~~~~----~~~--~~ 449 (1013)
+.++|+|.+|++++++||+||++ +|++++|.|++++|.+||++++ ++++++.++|++.++..+++.+ ... ..
T Consensus 374 ~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~ 452 (980)
T 3ibv_A 374 ASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLS 452 (980)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 7899999999999998722898656666655547999999999999-999999964849888889999999999871555
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCC-----CCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99883034589998874221013468-----7666478999999831-----6853555567999998899999841888
Q 001789 450 VPIPWKEVETKLFALNVVSEVVLQEG-----QAFDFSVIMQLVAVLS-----ASRSEELKGFMHIVYRSLADVIGSYSKW 519 (1013)
Q Consensus 450 ~~~~W~~~Ea~L~~l~~iae~~~~~~-----~~~~l~~i~~~l~~l~-----~~~~~~~~~~~~v~~~t~~~~ig~y~~w 519 (1013)
.+.+|+++||+||+++++||++..+. ....+|.++.++..+. .++++ .|++++ |+++|+|++|
T Consensus 453 ~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp------~V~~~~-~~~l~rys~~ 525 (980)
T 3ibv_A 453 PENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHP------LVQLLY-MEILVRYASF 525 (980)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCH------HHHHHH-HHHHHHTGGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCH------HHHHHH-HHHHHHHHHH
T ss_conf 899879999999999998765343123667552106899999999984788889978------999999-9999999999
Q ss_pred HHHCHHCHHHHHHHHHH--HCCCC--CHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH-HHCCC-----------
Q ss_conf 98653324999999998--11768--3279999999999999320049975089999999988-72699-----------
Q 001789 520 ISAFQTNARPLLLFLAA--GISEA--VSSNACASALRKICEDASALIDEPSNLEILMWIGEAL-EKRHL----------- 583 (1013)
Q Consensus 520 l~~~p~~L~~vl~~l~~--~l~~~--~v~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l-~~~~l----------- 583 (1013)
|..||++++++|++++. |++++ +|+.+||++|.++|++|+.++. | +.+.+++.+..+ .....
T Consensus 526 ~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~-~-~~~~il~~l~~lL~~~~~~~~~~~~~~~~ 603 (980)
T 3ibv_A 526 FDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVV-N-YTESSLAMLGDLLNISVSPVTDMDAPVPT 603 (980)
T ss_dssp GGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCS-S-SHHHHHHHTTGGGCCCCCCCCC--CSSCC
T ss_pred HHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 851935499999998260026699765999999999999998668744-5-89999999998616867888753222210
Q ss_pred --------CHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf --------94529999999999971599-078899999998799999999664026998777796136777777788787
Q 001789 584 --------PLEDEEEVVGAISLILGSVS-NKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLY 654 (1013)
Q Consensus 584 --------~~~~~~~l~eai~~ii~~lp-~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 654 (1013)
..+++..++||+|.+++..+ +.+.+..+++.++.|++++++++++.....+ + .. . .....+.
T Consensus 604 ~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~---~-~~-~----~i~~~i~ 674 (980)
T 3ibv_A 604 LNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSAL---E-NI-I----SVYCSLM 674 (980)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC-----C-HH-H----HHHHHHH
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---C-HH-H----HHHHHHH
T ss_conf 454203677147889999999999278998789999999999999999999886413586---3-88-8----9999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q ss_conf 52100133355678898888548999998999999999731104128999999999999997502046528999999997
Q 001789 655 RMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLST 734 (1013)
Q Consensus 655 ~l~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~k~~i~~~~~~~~~~l~~i~~~l~~ 734 (1013)
.++++.|++... ....+|+..+++++|+++..++. .|.++..|+|++|+++++++.++|.++.|++|++++.++.
T Consensus 675 al~~lakgf~~~----~~~~~p~~~~f~~~~~~il~~l~-~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~ 749 (980)
T 3ibv_A 675 AIGNFAKGFPAR----GSEEVAWLASFNKASDEIFLILD-RMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLN 749 (980)
T ss_dssp HHHHHHHTSCSC----C-CCCSHHHHHHHHHHHHHHHHH-HSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHH
T ss_pred HHHHHHCCCCCC----CCCCCCHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 999973167864----68888189999999999999988-2678678999999999999997557679878999999983
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC----CCCCCCCHHHHHHHHHHHHHHH-H
Q ss_conf 4421077631787769999980689986015999999976678899861579----8998974699999999999977-2
Q 001789 735 NFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSY----ICDQEPDLVEAYTNFASTFVRT-S 809 (1013)
Q Consensus 735 ~f~~~~~~~~~L~l~~~li~~~~~~~~~~~~i~~l~~~l~~~t~l~~l~~~~----~~~~~pDi~~~~f~l~~~~l~~-~ 809 (1013)
.|... .+++||++++++|..||.+ +.+.+.+++..+.+.+ +..+.++. .+++..|+.++||.|+..++.+ +
T Consensus 750 ~~~~~-e~~~fL~l~~qli~~f~~~--~~~~l~~ll~~l~~~i-f~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~ 825 (980)
T 3ibv_A 750 SIDMN-ELVDVLSFISQLIHIYKDN--MMEITNRMLPTLLMRI-FSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGF 825 (980)
T ss_dssp HCCTT-THHHHHHHHHHHHHHTTTT--SHHHHHHHHHHHHHHH-HHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCHH-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 69879-9999999999999999888--9999998899999999-997168989947999999999999999999983786
Q ss_pred HHHHHHCC-HHCHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 59987102-0222999999998-722587358999999999987434321048899999851599999999730199999
Q 001789 810 RKEVLAAS-GALLEVSFQKAAI-CCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVS 887 (1013)
Q Consensus 810 p~~~~~~~-~~~l~~i~~~~l~-~l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lv~ 887 (1013)
+.++++.. .+.++.++...+. +...+|+.+.|+++.|++.++..-++. +. .+...+++-+ .+.
T Consensus 826 ~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~~~~~-----~~------~~gf~~f~~~----~~~ 890 (980)
T 3ibv_A 826 GSILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSLWGGK-----DG------IAGFENFTLS----LTP 890 (980)
T ss_dssp TGGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC------------------CCHHHHHHH----HHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC-----CC------CHHHHHHHHH----HHH
T ss_conf 04521776567899999999998266787489989999999999997799-----86------2179999999----999
Q ss_pred HHHHHH-------CCCCCCCCHHHHHHHHHHHHHHHCHHCCCCHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHCCCCHH
Q ss_conf 999982-------3788654310256999999987001000100001687989889999850189544790100463189
Q 001789 888 NVVYAL-------LGVSAMSRVHKCATILQQLAAICSISERTSGKAILSWESLQGWLHSAVQVLPAEYLKQGETETLPPV 960 (1013)
Q Consensus 888 ~ll~~l-------~g~~~rs~~~~~~~iL~~l~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~p~~~v~~~~~~~F~~~ 960 (1013)
.++... .++..+-.+...+.+++.+..+.- +.+.++|.+. -+|+-.++++..+.|+++
T Consensus 891 ~~f~~p~~~~f~~~Daq~~~~~~e~~~~~k~~~~~~g-------------~~~~~~l~~~--~lp~~~~~~~~~~~~~~~ 955 (980)
T 3ibv_A 891 LCFEMPVNPNFNTRDGQSLVVLGELAGLQKIILEKLG-------------DIYKSYLVTV--YFPTVNFPDVMASEYLQA 955 (980)
T ss_dssp HHHHGGGC----------CHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHT--TTTC----CCHHHHHHHC
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC-------------HHHHHHHHHH--CCCCCCCCHHHHHHHHHH
T ss_conf 9998516988890238899999999999999999627-------------8999999983--377689898999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 999996443421100224899988776566651489999999987400777
Q 001789 961 WLKALAGAASDYLESMSCNGGNSNYGHMQGKGGRVLKRIIREFADSHRNVN 1011 (1013)
Q Consensus 961 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~F~~~crg~~ 1011 (1013)
+.. -+.|.||+-++.|...-||-|
T Consensus 956 l~~---------------------------~~~k~f~~~~~~~~~~~~~~~ 979 (980)
T 3ibv_A 956 LSN---------------------------LDSRSFKQFFQKFIQALKSGN 979 (980)
T ss_dssp -------------------------------------------CHHHHC--
T ss_pred HHC---------------------------CCHHHHHHHHHHHHHHHHCCC
T ss_conf 861---------------------------162369999999999863589
No 6
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=1.00 E-value=1 Score=728.13 Aligned_cols=907 Identities=14% Similarity=0.161 Sum_probs=672.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 84179999999999604999587999999999971194899999996535987877630278987798999982378888
Q 001789 2 QMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYL 81 (1013)
Q Consensus 2 ~~~~~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~w~~l 81 (1013)
+|+ .+++.++++++|+ |+++.|++|+++|++||++|++|..|..+|..+ .+.++|||||++|+++|+++|..+
T Consensus 12 ~~~-~~~l~~~l~~~~~-p~~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~s-----~~~~vr~~aa~~Lk~~i~~~W~~l 84 (1049)
T 3m1i_C 12 DLD-IALLDQVVSTFYQ-GSGVQQKQAQEILTKFQDNPDAWQKADQILQFS-----TNPQSKFIALSILDKLITRKWKLL 84 (1049)
T ss_dssp CCC-HHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHSTTGGGGHHHHHHHC-----SCHHHHHHHHHHHHHHHHHTGGGS
T ss_pred CCC-HHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 465-9999999999868-993899999999999883956999999998629-----988999999999999997607049
Q ss_pred CHHHHHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHHHCHHC--CCCCHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 9478999999999999982379------97999999999999980412--567559999999410358984049999997
Q 001789 82 QSAAKDALLNALLVAAKRFSSG------PPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEML 153 (1013)
Q Consensus 82 ~~e~~~~lr~~Ll~~l~~~~~~------~~~v~~kL~~aLa~l~~~~~--~W~~~i~~li~~l~~~~~~~~~~~~lL~iL 153 (1013)
|++++..||+.|++++.....+ ++.|++|+|.+++.++.+.+ .||+++++++..+++ ++..++..+.+|
T Consensus 85 ~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~~---~~~~~~~~l~~L 161 (1049)
T 3m1i_C 85 PNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSS---SVNVCENNMIVL 161 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC---CHHHHHHHHHHH
T ss_conf 99999999999999998627762000002899999999999999976811154799999998715---858899999999
Q ss_pred HHCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 21000001246555678967899999999740369999999956201489997621564899999999998603666557
Q 001789 154 TVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEIS 233 (1013)
Q Consensus 154 ~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~ 233 (1013)
+.++||+.+.+..+ ++..++..++..+..+.+.++.++.+++.... +..+...+++|+.+|+. |++
T Consensus 162 ~~l~eev~~~~~~~--~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~-------~~~~~~~aL~~l~~~l~-----wi~ 227 (1049)
T 3m1i_C 162 KLLSEEVFDFSAEQ--MTQAKALHLKNSMSKEFEQIFKLCFQVLEQGS-------SSSLIVATLESLLRYLH-----WIP 227 (1049)
T ss_dssp HHHHHHHHTSCTTT--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHTT-----TSC
T ss_pred HHHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHH-----HCC
T ss_conf 99999998726001--32689999999999999999999999998668-------88999999999999986-----088
Q ss_pred CCHHCCCCHHHHHH-HHCCCCCCHHHHHHHHHHHHHCCC-C----HHH---HHHHHHHH------------HHHHHHCCC
Q ss_conf 10110121599999-731698818999999999951488-9----469---89864342------------387510000
Q 001789 234 QGSLAAHPLLNFVF-NSLQVQSSFDVAIEVLVELVGRHE-G----LPQ---ALLCRVPF------------LKELLLLPA 292 (1013)
Q Consensus 234 ~~~~~~~~ll~~l~-~~L~~~~~~~~a~~~l~eii~~~~-~----~~~---~l~~~~~~------------l~~~~~~~~ 292 (1013)
.+.+..+++++.++ ..+.+++++++|++|++++++... + +.. .+++.++. +...+. .
T Consensus 228 ~~~~~~~~ll~~l~~~~l~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~--~ 305 (1049)
T 3m1i_C 228 YRYIYETNILELLSTKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYA--N 305 (1049)
T ss_dssp THHHHSSSHHHHHHTHHHHSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHH--H
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHC--C
T ss_conf 99886055999999986898767999999999999488995034688999999999999998862798541787744--5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHCCCCCCCCCHHHHHCHHHHHHHHHHHHCCCHHHH
Q ss_conf 0478388992799999999786459998169---3489999999800068887730344009999999988700323454
Q 001789 293 LTDGDEKVIGGLACLMSEIGQAAPSLIVEAS---PEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIA 369 (1013)
Q Consensus 293 ~~~~d~~~~~~l~~l~~~~~e~~~~~l~~~~---~~~~~ll~~ll~~~~~p~~d~~v~~~~l~FW~~l~~~l~~~~~~~~ 369 (1013)
..++|.++.+++|++|+++++.+...+.+.+ +....++++++.++.++ |.+++..+++||+.+.++++.
T Consensus 306 ~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~--d~~v~~~~lefw~~l~~~l~~------ 377 (1049)
T 3m1i_C 306 ANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE--ERELFKTTLDYWHNLVADLFY------ 377 (1049)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSS--CHHHHHHHHHHHHHHHHHHHH------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHH------
T ss_conf 771028999999999999999999998288214799999999999988689--089999999999999999974------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCC------CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 4434344521889999999999860668998-8898988------88633999999999999999885070679999986
Q 001789 370 KNKKHVEDMFFSVFSALLDALLLRAQVDESS-FNDDGMV------DLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFF 442 (1013)
Q Consensus 370 ~~~~~~~~~~~~~~~~L~~~l~~k~~~p~~~-~~~~~~~------d~~d~f~~fR~~~~D~l~~~~~il~~~~~l~~~~~ 442 (1013)
.+.....+++++.+++.+++.||.||+++ |.++.+. ++++|...+|+.++|++.+++.+.+.+ ++..++.
T Consensus 378 --~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~-~l~~v~~ 454 (1049)
T 3m1i_C 378 --EPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVID-TEEIMIS 454 (1049)
T ss_dssp --STTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHH-HHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHH
T ss_conf --6358999999999999999986589962000057998504865312227999999999999988369899-9999999
Q ss_pred HHHCC-CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33139-99998830345899988742210134687666478999999831685355556799999889999984188898
Q 001789 443 GSWGS-ANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWIS 521 (1013)
Q Consensus 443 ~~~~~-~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~ 521 (1013)
.+... .+.+++|+.+||++|+++++++.+.+......++.+++.+..+++....+. . ..+++.++|+++|+|++|+.
T Consensus 455 ~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~-~-~~~v~~~~~~~lgry~~~~~ 532 (1049)
T 3m1i_C 455 KLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKD-N-KAVVASDIMYVVGQYPRFLK 532 (1049)
T ss_dssp HHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHH-H-HHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC-C-HHHHHHHHHHHHHHHHHHHH
T ss_conf 999872778789899999999999986023762557999999999998776543566-5-49999889999997799998
Q ss_pred HCHHCHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHCCCC-------CCCCHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 6533249999999981176--83279999999999999320049-------97508999999998872699945299999
Q 001789 522 AFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALID-------EPSNLEILMWIGEALEKRHLPLEDEEEVV 592 (1013)
Q Consensus 522 ~~p~~L~~vl~~l~~~l~~--~~v~~~Aa~al~~lc~~c~~~l~-------~~~~~~~l~~~~~~l~~~~l~~~~~~~l~ 592 (1013)
.||+++++++++++++|++ +.|+.+||.||.+||++|+..+. .| +++.+++.+..+. ..++.++...++
T Consensus 533 ~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p-~~~~il~~l~~~~-~~~~~~~~~~~~ 610 (1049)
T 3m1i_C 533 AHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEP-FIQTIIRDIQKTT-ADLQPQQVHTFY 610 (1049)
T ss_dssp HCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSC-HHHHHHHTHHHHH-TTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-HHHHHHHHHHHHH-HHCCHHHHHHHH
T ss_conf 67899999999999986189878999999999999999889861156778775-7999999899999-858999999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--
Q ss_conf 99999971599078899999998799999999664026998-777796136777777788787521001333556788--
Q 001789 593 GAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNH-SLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPT-- 669 (1013)
Q Consensus 593 eai~~ii~~lp~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~-- 669 (1013)
||+|.++++.|+.+....++..++.|++++|++++.....+ +...+++.. ......+.+++.+.+.+...+..
T Consensus 611 eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~l~~~l~~~~~~~~~l~~~f~p~~ 686 (1049)
T 3m1i_C 611 KACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETV----KIIANIIKTNVAVCTSMGADFYPQL 686 (1049)
T ss_dssp HHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHH----HHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999975997899999999999889999999999873164640487999----9999999999999998567889999
Q ss_pred -------------------------C-CCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHH
Q ss_conf -------------------------9-88885489999989999999997311041289999999999999975020465
Q 001789 670 -------------------------N-PAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVT 723 (1013)
Q Consensus 670 -------------------------~-~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~k~~i~~~~~~~~~ 723 (1013)
+ ....+|....++.+||.+..++.. |..+.+ .++..+.|
T Consensus 687 ~~i~~~~l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~-~~~~~~--------------~l~~~~~~ 751 (1049)
T 3m1i_C 687 GHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVET-YISKAR--------------NLDDVVKV 751 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHH-HHHHCS--------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCC--------------CHHHHHHH
T ss_conf 999999999999999989999970585022108899999999999999999-998479--------------77999998
Q ss_pred HHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 28999999997442107---763178776999998068998601599999997667889986157989989746999999
Q 001789 724 LLPQVLDCLSTNFVSFQ---NHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTN 800 (1013)
Q Consensus 724 ~l~~i~~~l~~~f~~~~---~~~~~L~l~~~li~~~~~~~~~~~~i~~l~~~l~~~t~l~~l~~~~~~~~~pDi~~~~f~ 800 (1013)
++|++++.++..|.... +.+.+|++++.++..+|. .+.+.+..++..+.+++ +.++.+ +++++||++++||.
T Consensus 752 ~~~~~l~~ll~~~~~~~~~~~~~~~l~l~~~ii~~~~~--~~~~~l~~i~~~l~~~~-~~~i~~--~~~~~pd~~~~~f~ 826 (1049)
T 3m1i_C 752 LVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGH--MIPQGVILILQSVFECT-LDMINK--DFTEYPEHRVEFYK 826 (1049)
T ss_dssp THHHHHHHHHHHHHHSCGGGCCTHHHHHHHHHHHHHGG--GCHHHHHHHHHHHHHHH-HHHHSS--CSSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHC--CHHHCHHHHHHHHH
T ss_conf 78999999999887189632368799999999999887--60666899999999999-999852--42108999999999
Q ss_pred HHHHHHHHHHHHHHHCCHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99999977259987102022299999999872258735899999999998743432104889999985159999999973
Q 001789 801 FASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISH 880 (1013)
Q Consensus 801 l~~~~l~~~p~~~~~~~~~~l~~i~~~~l~~l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (1013)
|+.+++++||..+++.++..+..++++++++++++|+++.+++++||.+++++.... .+ .+..+.+++.
T Consensus 827 ll~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~~~~----~~-------~~~~~~f~~~ 895 (1049)
T 3m1i_C 827 LLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERM----GN-------VPFANEFHKN 895 (1049)
T ss_dssp HHHHHHHHCTHHHHHSCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHS----CS-------CHHHHHHHHH
T ss_pred HHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC----CC-------HHHHHHHHHH
T ss_conf 999999867899975999999999999999947998169999999999999998762----88-------6889999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCHHCCCC--HHC------CCCHHHHHHHHHHHH-CCCCCCCCCC
Q ss_conf 0199999999982378865431025699999998700100010--000------168798988999985-0189544790
Q 001789 881 SGEGLVSNVVYALLGVSAMSRVHKCATILQQLAAICSISERTS--GKA------ILSWESLQGWLHSAV-QVLPAEYLKQ 951 (1013)
Q Consensus 881 ~g~~Lv~~ll~~l~g~~~rs~~~~~~~iL~~l~~~~~~~~~~~--~~~------~~~~~~~~~wl~~~l-~~~p~~~v~~ 951 (1013)
+|..|+..++.+++|..|||++++++++|++|+.....+.... ++. ..+...+++|+.+.+ ..||+ +++
T Consensus 896 ~~~~l~~~~~~~l~~~~h~s~~~~~~~~l~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~ 973 (1049)
T 3m1i_C 896 YFFIFVSETFFVLTDSDHKSGFSKQALLLMKLISLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFPH--LTS 973 (1049)
T ss_dssp HHHHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHHHHTTCCCSCSSCGGGSSTTCCHHHHHHHHHHHHHHHHCTT--SCH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC--CCH
T ss_conf 999999999999856427521899999999999998627615666671015777874999999999999874899--999
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 100463189999996443421100224899988776566651489999999987400777
Q 001789 952 GETETLPPVWLKALAGAASDYLESMSCNGGNSNYGHMQGKGGRVLKRIIREFADSHRNVN 1011 (1013)
Q Consensus 952 ~~~~~F~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~F~~~crg~~ 1011 (1013)
+++++|++++++. .++..+||+++||||+.||+..
T Consensus 974 ~~~~~f~~~l~~~-------------------------~~~~~~f~~~~rdf~~~~~~~~ 1008 (1049)
T 3m1i_C 974 EQIASFLSALTKQ-------------------------YKDLVVFKGTLRDFLVQIKEVG 1008 (1049)
T ss_dssp HHHHHHHHHHHHC-------------------------TTCHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHC-------------------------CCCHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999970-------------------------2889999999999848656426
No 7
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=1.00 E-value=1 Score=554.56 Aligned_cols=913 Identities=14% Similarity=0.104 Sum_probs=598.6
Q ss_pred HHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 799999999996049-9958799999999997119489999999653598787763027898779899998237888894
Q 001789 5 LQIKVAQAVHVLNHD-TESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQS 83 (1013)
Q Consensus 5 ~~~~v~~ai~~ly~~-~d~~~~~~A~~~L~~~q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~w~~l~~ 83 (1013)
..+++.++++.+|++ +|++.|++|+++|++||++|++|..+..+|... +.+.++||||+++|+++|+++|..+++
T Consensus 9 ~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~~~----s~~~~vR~~A~~~Lk~~I~~~W~~l~~ 84 (1204)
T 3a6p_A 9 LCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEK----TQVAIVRHFGLQILEHVVKFRWNGMSR 84 (1204)
T ss_dssp HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTST----TSCHHHHHHHHHHHHHHHHHSGGGSCH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC----CCCHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 9999999999985899986999999999999883952799999999713----899899999999999999871566999
Q ss_pred HHHHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHCHHC--CCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCH
Q ss_conf 7899999999999998237----997999999999999980412--5675599999994103589840499999972100
Q 001789 84 AAKDALLNALLVAAKRFSS----GPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (1013)
Q Consensus 84 e~~~~lr~~Ll~~l~~~~~----~~~~v~~kL~~aLa~l~~~~~--~W~~~i~~li~~l~~~~~~~~~~~~lL~iL~~l~ 157 (1013)
+++..||+.+++++..... .++.|++|+|.+++.++.+.+ .||+++++++..+.+ ++..++..|.+|..++
T Consensus 85 e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~---~~~~~e~~L~iL~~L~ 161 (1204)
T 3a6p_A 85 LEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ---GETQTELVMFILLRLA 161 (1204)
T ss_dssp HHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC---CHHHHHHHHHHHHHHH
T ss_conf 9999999999999873034555565799999999999999986813125899999998648---9889999999999999
Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------CCC--CCCHHHHHHHHHHHHHHHHHC
Q ss_conf 000124655567896789999999974036999999995620148---------999--762156489999999999860
Q 001789 158 EEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFD---------GGV--PVQLHDRNRKILRCLLSWVRA 226 (1013)
Q Consensus 158 EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~---------~~~--~~~~~~~~~~~l~c~~sWi~~ 226 (1013)
||+.+++. +...++..+++.+..+++.|+.++..++....+ .+. ..++..+...+|+|+.+|+.
T Consensus 162 Eev~~~~~----~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~- 236 (1204)
T 3a6p_A 162 EDVVTFQT----LPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYID- 236 (1204)
T ss_dssp HHHHTSCC----SCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTT-
T ss_pred HHHCCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf 98706220----6899999999999999999999999999998787730452000011224459999999999999984-
Q ss_pred CCCCCCCCCHHCCC--CHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHH--HHHHHHHH--HHHHHHCC------CCC
Q ss_conf 36665571011012--15999997316988189999999999514889469--89864342--38751000------004
Q 001789 227 GCFTEISQGSLAAH--PLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQ--ALLCRVPF--LKELLLLP------ALT 294 (1013)
Q Consensus 227 ~~~~~~~~~~~~~~--~ll~~l~~~L~~~~~~~~a~~~l~eii~~~~~~~~--~l~~~~~~--l~~~~~~~------~~~ 294 (1013)
|++.+.+... .+++.++..+.+++++.+|++|++++++++++... .++..+.. +...+... .+.
T Consensus 237 ----Wi~~~~i~~~~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~ 312 (1204)
T 3a6p_A 237 ----WVSMSHITAENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLV 312 (1204)
T ss_dssp ----TSCHHHHHTTTSHHHHHHHHGGGCTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCC
T ss_pred ----CCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf ----2688999855552999999975988889999999999994889825678999997168999999986337878876
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH-----CCHHHHHHHHHHHHCCCCCCCCCHHHHHCHHHHHHHHHHHHCCCHHHH
Q ss_conf 783889927999999997864599981-----693489999999800068887730344009999999988700323454
Q 001789 295 DGDEKVIGGLACLMSEIGQAAPSLIVE-----ASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIA 369 (1013)
Q Consensus 295 ~~d~~~~~~l~~l~~~~~e~~~~~l~~-----~~~~~~~ll~~ll~~~~~p~~d~~v~~~~l~FW~~l~~~l~~~~~~~~ 369 (1013)
++|.++.+.+|++++++|+.+...+.+ .++.+..++++++.++.+| +.+++..+++||+.+.+... .
T Consensus 313 e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~--~~~vs~~~l~fW~~ll~~~~-~----- 384 (1204)
T 3a6p_A 313 EKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHP--SQFLRSSTQMTWGALFRHEI-L----- 384 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSS--CHHHHHHHHHHHHHHHSCTT-T-----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHCCC-C-----
T ss_conf 078999999999999999999999812323467167999999999998182--07868999999999970644-4-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHCCCCCCCC------C-C--CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCH---
Q ss_conf 443434452188999999999---98606689988------8-9--8988886339999999999999998850706---
Q 001789 370 KNKKHVEDMFFSVFSALLDAL---LLRAQVDESSF------N-D--DGMVDLPDGLVQFRMNLVELLVDICQLLRSA--- 434 (1013)
Q Consensus 370 ~~~~~~~~~~~~~~~~L~~~l---~~k~~~p~~~~------~-~--~~~~d~~d~f~~fR~~~~D~l~~~~~il~~~--- 434 (1013)
...+.+++++.+|+.++ +.|++||++.. . + +.+.|.+++|.+||++++|++..++.+.+..
T Consensus 385 ----~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~ 460 (1204)
T 3a6p_A 385 ----SRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQ 460 (1204)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred ----CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf ----6547899989999999999989715864468841134322558708999999999999999999998528899999
Q ss_pred HHHHHHHHHHHCC--------------------CCCCCCCHHHHHHHHHHHHHHHCCCC-C--CCCC--CHHHHHHHHHH
Q ss_conf 7999998633139--------------------99998830345899988742210134-6--8766--64789999998
Q 001789 435 TFIQKVFFGSWGS--------------------ANVPIPWKEVETKLFALNVVSEVVLQ-E--GQAF--DFSVIMQLVAV 489 (1013)
Q Consensus 435 ~~l~~~~~~~~~~--------------------~~~~~~W~~~Ea~L~~l~~iae~~~~-~--~~~~--~l~~i~~~l~~ 489 (1013)
.++..+.+.+... ...+.+|...||..+.++++.+++.. . +... ..+.+++.+..
T Consensus 461 ~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~ 540 (1204)
T 3a6p_A 461 MAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLN 540 (1204)
T ss_dssp HHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99999999975340044566532212355654576888999999999999999999840124453338999999999983
Q ss_pred H-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCHHHHHHHHHHHCCC--------------CCHHHHHHHHHHHH
Q ss_conf 3-16853555567999998899999841888986533249999999981176--------------83279999999999
Q 001789 490 L-SASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISE--------------AVSSNACASALRKI 554 (1013)
Q Consensus 490 l-~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~p~~L~~vl~~l~~~l~~--------------~~v~~~Aa~al~~l 554 (1013)
+ +++|. ++++. +.++|+|++|+..||++++++|++++.++.+ .+++.+||.+|.+|
T Consensus 541 ~~~~~p~--------l~~~~-i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L 611 (1204)
T 3a6p_A 541 FDTKDPL--------ILSCV-LTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKM 611 (1204)
T ss_dssp CCCSCHH--------HHHHH-HHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHH--------HHHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 7887757--------99999-99999878788629257999999999861568843124663189999999999999999
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHH-HHCC-CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH-----HH
Q ss_conf 999320049975089999999988-7269-9945299999999999715990788999999987999999996-----64
Q 001789 555 CEDASALIDEPSNLEILMWIGEAL-EKRH-LPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGK-----LI 627 (1013)
Q Consensus 555 c~~c~~~l~~~~~~~~l~~~~~~l-~~~~-l~~~~~~~l~eai~~ii~~lp~~~~~~~~l~~ll~p~~~~l~~-----~~ 627 (1013)
|++|+..|.+ +.+.|.+.+..+ ..+. ++..++..+++|++.+...+++++.+..+++.++.|++++|.+ .+
T Consensus 612 ~~~~~~~L~p--~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~~~~~~~~ 689 (1204)
T 3a6p_A 612 CRDYPQLVLP--NFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLSQDMHRVL 689 (1204)
T ss_dssp HHHCHHHHGG--GHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 9974687878--99999999999984765146888999999999996367979999999999999999987469898760
Q ss_pred CCCC---------CC--C-CCCCCHHH-----HHHHHHHHHHHHHHH---------CC-CCCCCCCCCCCCCCCCHHHHH
Q ss_conf 0269---------98--7-77796136-----777777788787521---------00-133355678898888548999
Q 001789 628 DGDN---------NH--S-LIHNPATY-----TQILSSATRGLYRMG---------TV-FSHLPVPLPTNPAGDDPIFAL 680 (1013)
Q Consensus 628 ~~~~---------~~--~-~~~~~~~~-----~~~l~~~~~~l~~l~---------~i-~~~l~~~~~~~~~~~~p~~~~ 680 (1013)
.... .. . ...++... ...+......++++. +. |-....+ ..++...+|+...
T Consensus 690 s~~~~f~~~~G~~~~~~~~~~~d~~~~~r~~l~~~~~~l~~~l~r~~~~~~~~~~~~~gf~~~~~~-~~~p~~~~p~~~~ 768 (1204)
T 3a6p_A 690 SDVDAFIAYVGTDQKSCDPGLEDPCGLNRARMSFCVYSILGVVKRTCWPTDLEEAKAGGFVVGYTS-SGNPIFRNPCTEQ 768 (1204)
T ss_dssp HCHHHHHHHHTSSCC--CTTCCTHHHHHHHHHHHHHHHHHHHHHHCCCCSSHHHHHHTTCEEEECS-SCCEEECCTTHHH
T ss_pred CCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCEECCCC-CCCCCCCCCHHHH
T ss_conf 599999999677987656664461120489999999999999999628887666513786111478-9870013835889
Q ss_pred HHHHHHHHHHHHHHHHC--CCHHHHHHHH-------------HHHHHHHHHH-CHHHH-HHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99899999999973110--4128999999-------------9999999975-02046-528999999997442107763
Q 001789 681 LRVFWPMLEKLFRSEHM--ENGNLSTAAC-------------RALSLAIQSS-GQHFV-TLLPQVLDCLSTNFVSFQNHE 743 (1013)
Q Consensus 681 ~~~i~~~l~~i~~~~~~--~~~~v~e~~c-------------~~~k~~i~~~-~~~~~-~~l~~i~~~l~~~f~~~~~~~ 743 (1013)
+..+||.+.+++.. +. .++++.+++| ++.+.|+... ..+.. +..+...+.+-.-+.. .+.+
T Consensus 769 i~~ilP~ll~Ll~~-~~~l~~p~~~~~l~~~~~~~~~~~~~er~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~re~ 846 (1204)
T 3a6p_A 769 ILKLLDNLLALIRT-HNTLYAPEMLAKMAEPFTKALDMLDAEKSAILGLPQPLLELNDSPVFKTVLERMQRFFST-LYEN 846 (1204)
T ss_dssp HHHHHHHHHHHHHH-HHHTTSHHHHTTSCGGGTTTTSCCHHHHHHHTCCCCCCCCTTCCCSCCCHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHH-HHHHCCCHHHHHCCHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-HHHH
T ss_conf 99983789999999-987459075654588889997346999998637976656532357776748999999988-9999
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHC-CHHC
Q ss_conf 1787769999980689986015999999976678899861579899--897469999999999997725998710-2022
Q 001789 744 CYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICD--QEPDLVEAYTNFASTFVRTSRKEVLAA-SGAL 820 (1013)
Q Consensus 744 ~~L~l~~~li~~~~~~~~~~~~i~~l~~~l~~~t~l~~l~~~~~~~--~~pDi~~~~f~l~~~~l~~~p~~~~~~-~~~~ 820 (1013)
||+++.+.. ..+|..-...+.+... +.+.. +.....+. .-+++++.+| ..++++||..+..+ =.+.
T Consensus 847 ~y~~lg~~~-~~l~~~fy~~~~l~~~---l~~~~----f~~l~~~~~~~l~~li~~~~---~p~i~~CP~~~~~~~l~pl 915 (1204)
T 3a6p_A 847 CFHILGKAG-PSMQQDFYTVEDLATQ---LLSSA----FVNLNNIPDYRLRPMLRVFV---KPLVLFCPPEHYEALVSPI 915 (1204)
T ss_dssp HHHHHHHHH-HHHCTTTTTSTTHHHH---HHHHT----TSSTTTSCHHHHHHHHHHTH---HHHHHTCCGGGTTTTHHHH
T ss_pred HHHHHHHHH-HCCCCCCCCCCCHHHH---HHHHH----HHCCHHCCHHHHHHHHHHHH---HHHHHCCCHHHHHHHHHHH
T ss_conf 999999775-1166100288415789---99999----72501031789999999999---9988609899999889878
Q ss_pred HHHHHHHHHHHHC-------------------------------------------------------------------
Q ss_conf 2999999998722-------------------------------------------------------------------
Q 001789 821 LEVSFQKAAICCT------------------------------------------------------------------- 833 (1013)
Q Consensus 821 l~~i~~~~l~~l~------------------------------------------------------------------- 833 (1013)
+..+|......++
T Consensus 916 L~~lf~~~~~~L~~~W~~i~~~~~~~~~~~~~~~~~~~~E~~~e~llr~lTr~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 995 (1204)
T 3a6p_A 916 LGPLFTYLHMRLSQKWQVINQRSLLCGEDEAADENPESQEMLEEQLVRMLTREVMDLITVCCVSKKGADHSSAPPADGDD 995 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--------------CHHHHHHHHHHHHHHHHHHHHHHHHHBC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 89999999999998999999875203566434553058999999999999999999999996288887766554444433
Q ss_pred -----------------------CCCHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCHHHHHHHHHH-----HHHHH
Q ss_conf -----------------------587358999999999987434321-0488999998515999999997-----30199
Q 001789 834 -----------------------AMHRGAALAAMSYLSCFLEECLAS-LLGYTTSIPEGSFNAMAIQVIS-----HSGEG 884 (1013)
Q Consensus 834 -----------------------~~e~~~~~a~~~fl~~li~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~g~~ 884 (1013)
..++.+..+.+.|+.+.+.|.-.. .. .+. .......++.++. +.|..
T Consensus 996 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~l~~~~~~l~~~D~~~~~--~~~--~~~~~~~v~~~~~~~~~~~~~~~ 1071 (1204)
T 3a6p_A 996 EEMMATEVTPSAMAELTDLGKCLMKHEDVCTALLITAFNSLAWKDTLSCQ--RTT--SQLCWPLLKQVLSGTLLADAVTW 1071 (1204)
T ss_dssp --------------CBCHHHHHHHSSHHHHHHHHHHHHHHTTSSCHHHHH--HHH--HHTHHHHHTTSCSSCCCHHHHHH
T ss_pred CCCCCCCCCCCCHHHCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHH--HHH--HHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 21235555653100002589998258878899999999882256828899--999--99899999998404570679999
Q ss_pred HHHHHHHHHC-CCCCCCCHHHHHHHHHHHHHHHCHHCCCCHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHH
Q ss_conf 9999999823-788654310256999999987001000100001687989889999850189544790100463189999
Q 001789 885 LVSNVVYALL-GVSAMSRVHKCATILQQLAAICSISERTSGKAILSWESLQGWLHSAVQVLPAEYLKQGETETLPPVWLK 963 (1013)
Q Consensus 885 Lv~~ll~~l~-g~~~rs~~~~~~~iL~~l~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~p~~~v~~~~~~~F~~~i~~ 963 (1013)
+...++.|+. +..|.+....++.+++.+...++ ... .|+.+++..+|+ +++++.++|..++.+
T Consensus 1072 l~~~vl~~l~~~~~~~~~~~~l~~l~~~i~~~~~-------------~~~-~~~~~vl~~lP~--i~~~~~~~f~~~l~~ 1135 (1204)
T 3a6p_A 1072 LFTSVLKGLQMHGQHDGCMASLVHLAFQIYEALR-------------PRY-LEIRAVMEQIPE--IQKDSLDQFDCKLLN 1135 (1204)
T ss_dssp HHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHST-------------TTC-STHHHHHTTSSS--CCHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC-------------CCC-CCHHHHHHHCCC--CCHHHHHHHHHHHHC
T ss_conf 9999999998448883558999999999999847-------------799-619999986899--999999999999746
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 9964434211002248999887765666514899999999874007778
Q 001789 964 ALAGAASDYLESMSCNGGNSNYGHMQGKGGRVLKRIIREFADSHRNVNL 1012 (1013)
Q Consensus 964 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~F~~~crg~~~ 1012 (1013)
.. . +.++.|+-|.+++||...+||.+.
T Consensus 1136 ~~--------------~--------~~~~~k~qr~~~~~ll~~~~g~~~ 1162 (1204)
T 3a6p_A 1136 PS--------------L--------QKVADKRRKDQFKRLIAGCIGKPL 1162 (1204)
T ss_dssp C------------------------------------------------
T ss_pred CC--------------C--------CCCCHHHHHHHHHHHHHHHCCCCH
T ss_conf 35--------------4--------652358999999999987548729
No 8
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=1.00 E-value=1 Score=316.45 Aligned_cols=722 Identities=11% Similarity=0.062 Sum_probs=433.5
Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC---
Q ss_conf 41799999999996049995879999999999711948999999965359878776302789877989999823788---
Q 001789 3 MDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGY--- 79 (1013)
Q Consensus 3 ~~~~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~w~--- 79 (1013)
|+..+++.+++.... +||++.| |+++|++++++|+.|..+.+++.... .+.++|++||++|+++|+++|.
T Consensus 1 M~d~~~l~~~L~~~~-spd~~~r--Ae~~L~~~~~~p~~~~~L~~il~~~~----~~~~vR~~A~i~lkn~i~~~w~~~~ 73 (960)
T 1wa5_C 1 MSDLETVAKFLAESV-IASTAKT--SERNLRQLETQDGFGLTLLHVIASTN----LPLSTRLAGALFFKNFIKRKWVDEN 73 (960)
T ss_dssp CCHHHHHHHHHHHTT-SGGGHHH--HHHHHHHHHTSTTHHHHHHHHHHCTT----SCHHHHHHHHHHHHHHHHHHSBCSS
T ss_pred CCCHHHHHHHHHHHC-CCCHHHH--HHHHHHHHHCCCCHHHHHHHHHHCCC----CCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 975999999999765-9987899--99999985559988999999986579----8888999999999999985488765
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHC--CCCCHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf ---88947899999999999998237997999999999999980412--5675599999994103589840499999972
Q 001789 80 ---YLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLT 154 (1013)
Q Consensus 80 ---~l~~e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~~~~~--~W~~~i~~li~~l~~~~~~~~~~~~lL~iL~ 154 (1013)
.++++.+..||+.|++.+.. .++.|++|+|.+++.++.+.. .||+++++++..++++ ++......|.++.
T Consensus 74 ~~~~l~~~~k~~ik~~ll~~l~~---~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~--~~~~~~~aL~~l~ 148 (960)
T 1wa5_C 74 GNHLLPANNVELIKKEIVPLMIS---LPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSND--DMVTNKGVLTVAH 148 (960)
T ss_dssp SCBSSCHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSS--CTTHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC--CHHHHHHHHHHHH
T ss_conf 67889989999999999999980---879999999999999998617130157999999984789--8899999999999
Q ss_pred HCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH----HHHHHHHHHHHHHHHHCCCCC
Q ss_conf 1000001246555678967899999999740369999999956201489997621----564899999999998603666
Q 001789 155 VLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQL----HDRNRKILRCLLSWVRAGCFT 230 (1013)
Q Consensus 155 ~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~----~~~~~~~l~c~~sWi~~~~~~ 230 (1013)
.+.+... ..- ...+.+..+...+....+.+++++....+...++..+... ......+++++.+-+.+
T Consensus 149 ~i~~~~~---~~~--~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~---- 219 (960)
T 1wa5_C 149 SIFKRWR---PLF--RSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQ---- 219 (960)
T ss_dssp HHHGGGT---TSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSS----
T ss_pred HHHHHHH---HHH--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_conf 9999988---761--4847789999999998999999999999998735798799999999999999999998625----
Q ss_pred CCCCCHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC-CCC---C-HHHHHHHH
Q ss_conf 557101101215999997316988189999999999514889469898643423875100000-478---3-88992799
Q 001789 231 EISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPAL-TDG---D-EKVIGGLA 305 (1013)
Q Consensus 231 ~~~~~~~~~~~ll~~l~~~L~~~~~~~~a~~~l~eii~~~~~~~~~l~~~~~~l~~~~~~~~~-~~~---d-~~~~~~l~ 305 (1013)
.+|... . +.+...+..+..++.... + ... .. .++ . ...-+.++
T Consensus 220 ~~~~~~--~--------------~~~~~~~~~~~~~l~~~~--------------p-~~~-~d~d~~~~~~~~~vk~~~~ 267 (960)
T 1wa5_C 220 DIPEFF--E--------------DNIQVGMGIFHKYLSYSN--------------P-LLE-DPDETEHASVLIKVKSSIQ 267 (960)
T ss_dssp CCCHHH--H--------------HTHHHHHHHHHHHHSCCS--------------C-CCC-------CCCHHHHHHHHHH
T ss_pred CCHHHH--H--------------HHHHHHHHHHHHHHCCCC--------------C-CCC-CCCCCCCCCHHHHHHHHHH
T ss_conf 655999--9--------------989999999999976899--------------8-555-7855331327999999999
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC----CCCCCCCHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-
Q ss_conf 99999978645999816934899999998000----6888773034400999999998870032345444343445218-
Q 001789 306 CLMSEIGQAAPSLIVEASPEALALADALLSCV----AFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFF- 380 (1013)
Q Consensus 306 ~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~----~~p~~d~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~~- 380 (1013)
+.++.+.+.|...+... ...+++.++... .... ++++...+++||..+.+. +..+..++
T Consensus 268 ~~l~~l~~~~~~~f~~~---~~~~~~~~~~~l~~~~~~~~-~~~~~~~al~fl~~~~~~------------~~~~~~~~~ 331 (960)
T 1wa5_C 268 ELVQLYTTRYEDVFGPM---INEFIQITWNLLTSISNQPK-YDILVSKSLSFLTAVTRI------------PKYFEIFNN 331 (960)
T ss_dssp HHHHHHHHHCHHHHHHH---HHHHHHHHHHHHHHCCSCTT-SHHHHHHHHHHHHHHHTS------------HHHHGGGCS
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHCC------------HHHHHHHCC
T ss_conf 99999999989999999---99999999999984377767-289999999999999686------------768998768
Q ss_pred -HHHHHHH-HHHHHHCCCCCCCCCCCCCCC---------CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH----HH
Q ss_conf -8999999-999986066899888989888---------86339999999999999998850706799999863----31
Q 001789 381 -SVFSALL-DALLLRAQVDESSFNDDGMVD---------LPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFG----SW 445 (1013)
Q Consensus 381 -~~~~~L~-~~l~~k~~~p~~~~~~~~~~d---------~~d~f~~fR~~~~D~l~~~~~il~~~~~l~~~~~~----~~ 445 (1013)
+++.+++ .+++..|.+++++.. .|+.| +.+++...|+..++++..++...|. .++..++.. +.
T Consensus 332 ~~~l~~li~~~i~~~m~~~~~d~e-~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~-~v~~~~l~~i~~~l~ 409 (960)
T 1wa5_C 332 ESAMNNITEQIILPNVTLREEDVE-LFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEV-LVTNIFLAHMKGFVD 409 (960)
T ss_dssp HHHHHHHHHHTHHHHHSCCGGGTT-TTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHH-HHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHH
T ss_conf 518999999996873488887899-884499999986357551237188999999999997013-278999999999998
Q ss_pred C-CCCCCCCCHHHHHHHHHHHHHHHCCC--CC--C---CCCCHHH-HHHH-HHHHCCC-C-HHHHHHHHHHHHHHHHHHH
Q ss_conf 3-99999883034589998874221013--46--8---7666478-9999-9983168-5-3555567999998899999
Q 001789 446 G-SANVPIPWKEVETKLFALNVVSEVVL--QE--G---QAFDFSV-IMQL-VAVLSAS-R-SEELKGFMHIVYRSLADVI 513 (1013)
Q Consensus 446 ~-~~~~~~~W~~~Ea~L~~l~~iae~~~--~~--~---~~~~l~~-i~~~-l~~l~~~-~-~~~~~~~~~v~~~t~~~~i 513 (1013)
. ..+.+.+|+..||++++++++++... .. . ....+.. +.+. +..+... + + +.+|+++ |+++
T Consensus 410 ~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~------p~vr~~a-~~~l 482 (960)
T 1wa5_C 410 QYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPH------IILRVDA-IKYI 482 (960)
T ss_dssp HHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSC------HHHHHHH-HHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC------CEEHHHH-HHHH
T ss_conf 73669612179999999999999987412567741234435699999997378744998888------3303989-9999
Q ss_pred HHHHHHHHHCHHCHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHHH-----------HHCCCCCCCCHHHHH-HHHHHHH
Q ss_conf 84188898653324999999998117683--279999999999999-----------320049975089999-9999887
Q 001789 514 GSYSKWISAFQTNARPLLLFLAAGISEAV--SSNACASALRKICED-----------ASALIDEPSNLEILM-WIGEALE 579 (1013)
Q Consensus 514 g~y~~wl~~~p~~L~~vl~~l~~~l~~~~--v~~~Aa~al~~lc~~-----------c~~~l~~~~~~~~l~-~~~~~l~ 579 (1013)
|+|++|+ +++++.++++.++.++.++. |+.+||.||.++|+. ++..+. | +++.++ .+...+.
T Consensus 483 g~~~~~~--~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~-p-~l~~ll~~L~~ll~ 558 (960)
T 1wa5_C 483 YTFRNQL--TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDIS-N-STEILLKNLIALIL 558 (960)
T ss_dssp HHTGGGS--CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTT-T-THHHHHHHHHHHHH
T ss_pred HHHHHHC--CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH-H-HHHHHHHHHHHHHH
T ss_conf 9988658--999999999999998489972199999999999984436444665443598756-4-69999999999997
Q ss_pred HCC---CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 269---99452999999999997159907889999999879999999966402699877779613677777778878752
Q 001789 580 KRH---LPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRM 656 (1013)
Q Consensus 580 ~~~---l~~~~~~~l~eai~~ii~~lp~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l 656 (1013)
... .+..+...++++++.++...+. + ...+...++..+...+....+.. .++.. ....+.++
T Consensus 559 ~~~~~~~~~~~~e~l~~al~~vv~~~~~-~-~~p~~~~l~~~L~~~l~~~~~~~------~~~~~-------~~~~~e~l 623 (960)
T 1wa5_C 559 KHGSSPEKLAENEFLMRSIFRVLQTSED-S-IQPLFPQLLAQFIEIVTIMAKNP------SNPRF-------THYTFESI 623 (960)
T ss_dssp TTCCCHHHHTSCHHHHHHHHHHHHHHTT-T-TGGGHHHHHHHHHHHHHHHTTSC------CCHHH-------HHHHHHHH
T ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHCC------CCCHH-------HHHHHHHH
T ss_conf 1467877643227999999999998888-6-12479999999999999997398------97278-------89999999
Q ss_pred HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH--H
Q ss_conf 10013335567889888854899999899999999973110412899999999999999750204652899999999--7
Q 001789 657 GTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLS--T 734 (1013)
Q Consensus 657 ~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~k~~i~~~~~~~~~~l~~i~~~l~--~ 734 (1013)
+.+.+.. .+++...+.+.+||.+..++.. .. .++.+.++.++...+... ..+.+.+..+++.+. .
T Consensus 624 ~~l~~~~---------~~~~~~~~~~~~~p~~~~iL~~-~~--~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~~~~ 690 (960)
T 1wa5_C 624 GAILNYT---------QRQNLPLLVDSMMPTFLTVFSE-DI--QEFIPYVFQIIAFVVEQS-ATIPESIKPLAQPLLAPN 690 (960)
T ss_dssp HHHHHTS---------CGGGHHHHHHHHHHHHHHHHHT-TC--TTTHHHHHHHHHHHHHHC-SSCCTTTGGGHHHHTSGG
T ss_pred HHHHHCC---------CCCHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHCCHH
T ss_conf 9999638---------9536999999999999999986-05--766999999999999735-478899999999980999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44210776317877699999806899860159999999766788998615798998974699999999999977259987
Q 001789 735 NFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVL 814 (1013)
Q Consensus 735 ~f~~~~~~~~~L~l~~~li~~~~~~~~~~~~i~~l~~~l~~~t~l~~l~~~~~~~~~pDi~~~~f~l~~~~l~~~p~~~~ 814 (1013)
.+......+..+.+...++...++ .... +..++.. +..+.+. . .+| ...|.++..++.++|...+
T Consensus 691 ~~~~~~~~~~~~~~L~~~~~~~~~--~~~~-~~~~l~~------~~~~~~~---~-~~~--~~a~~ll~~i~~~~~~~~~ 755 (960)
T 1wa5_C 691 VWELKGNIPAVTRLLKSFIKTDSS--IFPD-LVPVLGI------FQRLIAS---K-AYE--VHGFDLLEHIMLLIDMNRL 755 (960)
T ss_dssp GGCCTTTHHHHHHHHHHHHHHHGG--GCSC-SHHHHHH------HHHHHTC---T-TTH--HHHHHHHHHHHHHSCHHHH
T ss_pred HHCCCCCCHHHHHHHHHHHHHCHH--HHHH-HHHHHHH------HHHHHCC---C-CCC--CHHHHHHHHHHHHCCHHHH
T ss_conf 855778735589999999976849--9999-9999999------9999679---9-420--3599999999997987778
Q ss_pred HCCHHCHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHH
Q ss_conf 1020222999999998722587358-9999999999874
Q 001789 815 AASGALLEVSFQKAAICCTAMHRGA-ALAAMSYLSCFLE 852 (1013)
Q Consensus 815 ~~~~~~l~~i~~~~l~~l~~~e~~~-~~a~~~fl~~li~ 852 (1013)
. +.++.++...+..+.....+. .++.+.|+..+..
T Consensus 756 ~---~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~~ 791 (960)
T 1wa5_C 756 R---PYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISN 791 (960)
T ss_dssp G---GGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9---88999999999998317747499999999999998
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=301.19 Aligned_cols=742 Identities=12% Similarity=0.101 Sum_probs=442.1
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 17999999999960499958799999999997119489999999653598787763027898779899998237888894
Q 001789 4 DLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQS 83 (1013)
Q Consensus 4 ~~~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~w~~l~~ 83 (1013)
+..+++.++++..+ ++|++.|++|+++|++++++|+.|..+..++.... +.+.++|++|+..|++.|+++|..+++
T Consensus 10 ~~~~~l~~~l~~~~-s~d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~---~~~~~vR~~a~~~Lkn~i~~~w~~~~~ 85 (852)
T 4fdd_A 10 QGLQQILQLLKESQ-SPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLK---SEDEPTRSLSGLILKNNVKAHFQNFPN 85 (852)
T ss_dssp HHHHHHHHHHHHHT-CSCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCT---TSCHHHHHHHHHHHHHHTTTSGGGCCH
T ss_pred HHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 23999999999873-94989999999999998709988999999985668---898679999999999989874477999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHC--CCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCHHCCC
Q ss_conf 7899999999999998237997999999999999980412--56755999999941035898404999999721000001
Q 001789 84 AAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVI 161 (1013)
Q Consensus 84 e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~~~~~--~W~~~i~~li~~l~~~~~~~~~~~~lL~iL~~l~EE~~ 161 (1013)
+.+..+|+.+++.+. ..++.|+++++.+++.++.+.+ .||+.++.++..+.+. ++......+..|..+.++..
T Consensus 86 ~~~~~ik~~ll~~l~---~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~--~~~~r~~al~~L~~i~~~~~ 160 (852)
T 4fdd_A 86 GVTDFIKSECLNNIG---DSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSE--DYNTCEGAFGALQKICEDSA 160 (852)
T ss_dssp HHHHHHHHHHHTTTT---CSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCS--SHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999874---9989999999999999998648135689999999987099--98999999999999999857
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCC
Q ss_conf 24655567896789999999974036999999995620148999762156489999999999860366655710110121
Q 001789 162 DSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHP 241 (1013)
Q Consensus 162 ~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ 241 (1013)
.. ... ..+......++..+.+.+.. ++..++..+++|+..++... +....
T Consensus 161 ~~---------~~~----~~~~~~~~~il~~l~~~l~~--------~~~~vR~~A~~aL~~~~~~~-----~~~~~---- 210 (852)
T 4fdd_A 161 EI---------LDS----DVLDRPLNIMIPKFLQFFKH--------SSPKIRSHAVACVNQFIISR-----TQALM---- 210 (852)
T ss_dssp TH---------HHH----CSSSSCHHHHHHHHTTTTTC--------SSHHHHHHHHHHHHTTTTTT-----CHHHH----
T ss_pred HH---------HCH----HHHCCHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHHHHCC-----CHHHH----
T ss_conf 87---------563----43133299999999998567--------97899999999999998646-----38799----
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 59999973169881899999999995148894698986434238751000004783889927999999997864599981
Q 001789 242 LLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVE 321 (1013)
Q Consensus 242 ll~~l~~~L~~~~~~~~a~~~l~eii~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~~~~~~l~~l~~~~~e~~~~~l~~ 321 (1013)
.....+++.+.. ...++|.+.....+..+..+.+.+...+..
T Consensus 211 ------------------------------~~~~~~l~~l~~--------~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~ 252 (852)
T 4fdd_A 211 ------------------------------LHIDSFIENLFA--------LAGDEEPEVRKNVCRALVMLLEVRMDRLLP 252 (852)
T ss_dssp ------------------------------TSHHHHHHHHHH--------HHTCCCHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred ------------------------------HHHHHHHHHHHH--------HCCCCCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf ------------------------------889999999998--------717997789999999999999857798998
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-
Q ss_conf 6934899999998000688877303440099999999887003234544434344521889999999999860668998-
Q 001789 322 ASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESS- 400 (1013)
Q Consensus 322 ~~~~~~~ll~~ll~~~~~p~~d~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~~~- 400 (1013)
+...+++.++.+...+ |.++...+++||..+.+.. ......+|++.+++..++.++.+++++
T Consensus 253 ---~l~~l~~~l~~~~~~~--~~~vr~~a~e~l~~l~~~~------------~~~~~~~~~~~~l~p~ll~~l~~~e~d~ 315 (852)
T 4fdd_A 253 ---HMHNIVEYMLQRTQDQ--DENVALEACEFWLTLAEQP------------ICKDVLVRHLPKLIPVLVNGMKYSDIDI 315 (852)
T ss_dssp ---GHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHTTST------------THHHHHTTTHHHHHHHHHHHTSCCHHHH
T ss_pred ---HHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHCCH------------HHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf ---8999999999870699--6899999999999986036------------5798878889889999998757867679
Q ss_pred -C--CC-CCCCCCCCHH--HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf -8--89-8988886339--9999999999999988507067999998633139999988303458999887422101346
Q 001789 401 -F--ND-DGMVDLPDGL--VQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQE 474 (1013)
Q Consensus 401 -~--~~-~~~~d~~d~f--~~fR~~~~D~l~~~~~il~~~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~ 474 (1013)
| .+ +.|.+++|++ ...|+...+.+..+....|.+ ++..++..+.... .+.+|+..++++++++++++++.+.
T Consensus 316 ~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~-~~~~l~~~l~~~l-~~~~~~~R~aa~~alg~i~~~~~~~ 393 (852)
T 4fdd_A 316 ILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE-LLPHILPLLKELL-FHHEWVVKESGILVLGAIAEGCMQG 393 (852)
T ss_dssp HHHHC------------CCCCHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHTTTTTHHH
T ss_pred HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHCCHHH
T ss_conf 9866984432224564011169999999999998746187-8999999999985-5998899999999999998635688
Q ss_pred CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CHHCHHHHHHHHHHHCCC--CCHHHHHHHH
Q ss_conf 876664789999998316853555567999998899999841888986--533249999999981176--8327999999
Q 001789 475 GQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA--FQTNARPLLLFLAAGISE--AVSSNACASA 550 (1013)
Q Consensus 475 ~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~--~p~~L~~vl~~l~~~l~~--~~v~~~Aa~a 550 (1013)
-.. .++.++..+..+..++... ||.++ ++++|++++|+.. +..++..+++.++..+.+ +.++..|+.+
T Consensus 394 ~~~-~l~~~l~~l~~~l~d~~~~------Vr~~a-~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~a 465 (852)
T 4fdd_A 394 MIP-YLPELIPHLIQCLSDKKAL------VRSIT-CWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSA 465 (852)
T ss_dssp HGG-GHHHHHHHHHHHTTCSSHH------HHHHH-HHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHCCCCCHH------HHHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 998-7999999999871799889------99999-999999998861104789999999999999858988899999999
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHH-HHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999320049975089999999-988726999452999999999997159907889999999879999999966402
Q 001789 551 LRKICEDASALIDEPSNLEILMWIG-EALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDG 629 (1013)
Q Consensus 551 l~~lc~~c~~~l~~~~~~~~l~~~~-~~l~~~~l~~~~~~~l~eai~~ii~~lp~~~~~~~~l~~ll~p~~~~l~~~~~~ 629 (1013)
+..+|+.|+..+. | +++.++... ..+... +......++++++.++..++..-....++..++.++++.|..+...
T Consensus 466 L~~l~~~~~~~l~-~-~l~~ll~~L~~~l~~~--~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~ 541 (852)
T 4fdd_A 466 FATLEEEACTELV-P-YLAYILDTLVFAFSKY--QHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDE 541 (852)
T ss_dssp HHHHHHHHGGGGG-G-GHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999997367667-6-7999999999999883--7479999999999999974243136789999889999998733304
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH----HHHHHHHH-------H--H
Q ss_conf 699877779613677777778878752100133355678898888548999998999----99999973-------1--1
Q 001789 630 DNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWP----MLEKLFRS-------E--H 696 (1013)
Q Consensus 630 ~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~----~l~~i~~~-------~--~ 696 (1013)
. +... ..+.+++.+.+.+... +.++...+++ .+...+.. . +
T Consensus 542 ~--------~~~~--------~~~~~l~~i~~~~g~~----------~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~ 595 (852)
T 4fdd_A 542 D--------KDLF--------PLLECLSSVATALQSG----------FLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQY 595 (852)
T ss_dssp C--------TTHH--------HHHHHHHHHHHHHGGG----------GHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTS
T ss_pred C--------HHHH--------HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 6--------9999--------9999999999997486----------798899999999999999999998753388666
Q ss_pred -CCCHHHHHHHHHHHHHHHHHHCHHHHHHH--HHHHHHHHHHHHHCCCCCH----HHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf -04128999999999999997502046528--9999999974421077631----7877699999806899860159999
Q 001789 697 -MENGNLSTAACRALSLAIQSSGQHFVTLL--PQVLDCLSTNFVSFQNHEC----YIRTASVVIEEFGHKDEYGPLFVTT 769 (1013)
Q Consensus 697 -~~~~~v~e~~c~~~k~~i~~~~~~~~~~l--~~i~~~l~~~f~~~~~~~~----~L~l~~~li~~~~~~~~~~~~i~~l 769 (1013)
..+.++...++..+...++.+|.++.+++ +.+++.+...+.. +.+. ...+.+.+...++. ...+.+..+
T Consensus 596 ~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~--~~~~vr~~a~~~l~~l~~~~~~--~~~~~l~~~ 671 (852)
T 4fdd_A 596 EAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQD--KMPEVRQSSFALLGDLTKACFQ--HVKPCIADF 671 (852)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTC--SSHHHHHHHHHHHHHHHHHCGG--GTGGGHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_conf 887611999999999789998747699883677189999998389--9844999999999999998168--889879999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHCHHHHHHHHHHHHCCCC--HHHHHHHHHHH
Q ss_conf 9997667889986157989989746999999999999772599871020222999999998722587--35899999999
Q 001789 770 FERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMH--RGAALAAMSYL 847 (1013)
Q Consensus 770 ~~~l~~~t~l~~l~~~~~~~~~pDi~~~~f~l~~~~l~~~p~~~~~~~~~~l~~i~~~~l~~l~~~e--~~~~~a~~~fl 847 (1013)
+..+. ..+. .+++++.......+..+.++....+. +....++...+.-+..++ +...+.++.-+
T Consensus 672 lp~l~-----~~l~-----~~~~~v~~~a~~alg~i~~~~~~~~~----p~~~~il~~L~~~l~~~~~~~~~~~~a~~~i 737 (852)
T 4fdd_A 672 MPILG-----TNLN-----PEFISVCNNATWAIGEISIQMGIEMQ----PYIPMVLHQLVEIINRPNTPKTLLENTAITI 737 (852)
T ss_dssp HHHHH-----HTCC-----TTSHHHHHHHHHHHHHHHHHHGGGGG----GGTHHHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred HHHHH-----HHCC-----CCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 99999-----8769-----42068999999999999997117678----7899999999998579988720778899999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 9987434321048899999851599999999730199999999982378865431025699999998700
Q 001789 848 SCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVHKCATILQQLAAICS 917 (1013)
Q Consensus 848 ~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lv~~ll~~l~g~~~rs~~~~~~~iL~~l~~~~~ 917 (1013)
..+... ....+.++.+.++...+.++-.......-+....-|-.++..+|
T Consensus 738 grl~~~--------------------~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p 787 (852)
T 4fdd_A 738 GRLGYV--------------------CPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNP 787 (852)
T ss_dssp HHHHHH--------------------CHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHH--------------------CHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCH
T ss_conf 999986--------------------88976755899999999986536660799999999999998691
No 10
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=279.78 Aligned_cols=719 Identities=12% Similarity=0.115 Sum_probs=452.3
Q ss_pred CHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHCC--HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCC-
Q ss_conf 41799999999996-0499958799999999997119--4899999996535987877630278987798999982378-
Q 001789 3 MDLQIKVAQAVHVL-NHDTESCNRVAANQWLVQFQQT--DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEG- 78 (1013)
Q Consensus 3 ~~~~~~v~~ai~~l-y~~~d~~~~~~A~~~L~~~q~s--~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~w- 78 (1013)
||. .++.+++..+ + ++|++.|++|+++|++++++ |+.|..+.+++.... .+.++|++|+++|+++|.++|
T Consensus 1 Md~-~~l~~~L~~~~~-s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~----~~~~vR~~A~~~lk~~i~~~w~ 74 (861)
T 2bpt_A 1 MST-AEFAQLLENSIL-SPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDEN----TKLEGRILAALTLKNELVSKDS 74 (861)
T ss_dssp CCH-HHHHHHHHHHHH-CSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTT----SCHHHHHHHHHHHHTTTCCSSH
T ss_pred CCH-HHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHHHHCCCCCH
T ss_conf 987-799999997426-9397999999999999985199999999999983789----9867999999998702257574
Q ss_pred ----------CC-CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHH-C--CCCCHHHHHHHHHHCCCCCCC
Q ss_conf ----------88-894789999999999999823799799999999999998041-2--567559999999410358984
Q 001789 79 ----------YY-LQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA-V--EHGKPIEKLFYSLQNLQSQDN 144 (1013)
Q Consensus 79 ----------~~-l~~e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~~~~-~--~W~~~i~~li~~l~~~~~~~~ 144 (1013)
.. ++++.+..||+.|++.+. ..+..++++++.+++.++.+. + .||++++.++..+.+.. ++.
T Consensus 75 ~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~---~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~-~~~ 150 (861)
T 2bpt_A 75 VKTQQFAQRWITQVSPEAKNQIKTNALTALV---SIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQ-PEN 150 (861)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTS-CHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC-CHH
T ss_conf 8789999767662999999999999999877---996379999999999999846764554999999999872689-789
Q ss_pred CHHHHHHHHHHCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 04999999721000001246555678967899999999740369999999956201489997621564899999999998
Q 001789 145 GNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWV 224 (1013)
Q Consensus 145 ~~~~lL~iL~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi 224 (1013)
.....+.++..+++++... .. .+....+.++..+...+.... ++..++..+++|+.+|+
T Consensus 151 ~r~~al~~l~~l~~~~~~~------~~---------~~~~~~~~ll~~l~~~l~~~~------~~~~vr~~al~~l~~~~ 209 (861)
T 2bpt_A 151 VKRASLLALGYMCESADPQ------SQ---------ALVSSSNNILIAIVQGAQSTE------TSKAVRLAALNALADSL 209 (861)
T ss_dssp HHHHHHHHHHHHHHTSSTT------SS---------TTGGGHHHHHHHHHHHHSTTC------CCHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHCCCHH------HH---------HHHHHHHHHHHHHHHHHCCCC------CCHHHHHHHHHHHHHHH
T ss_conf 9999999999999727843------56---------789889999999998415799------98789999999999999
Q ss_pred HCCCCCCCCCCHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 60366655710110121599999731698818999999999951488946989864342387510000047838899279
Q 001789 225 RAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGL 304 (1013)
Q Consensus 225 ~~~~~~~~~~~~~~~~~ll~~l~~~L~~~~~~~~a~~~l~eii~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~~~~~~l 304 (1013)
.+... .+.... ....+++.+...+ .+++.+.....
T Consensus 210 ~~~~~-~~~~~~-~~~~ll~~l~~~~-------------------------------------------~~~~~~~r~~a 244 (861)
T 2bpt_A 210 IFIKN-NMEREG-ERNYLMQVVCEAT-------------------------------------------QAEDIEVQAAA 244 (861)
T ss_dssp GGCHH-HHTSHH-HHHHHHHHHHHHH-------------------------------------------TCSCHHHHHHH
T ss_pred HHHHH-HCCCHH-HHHHHHHHHHHHH-------------------------------------------CCCCHHHHHHH
T ss_conf 99998-706766-8999999999986-------------------------------------------59988999999
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHCCCCCCCCCHHHHHCHHHHHHHHHHHHCCCHHHHH--HHH-HHHHHHH
Q ss_conf 99999997864599981693489-9999998000688877303440099999999887003234544--434-3445218
Q 001789 305 ACLMSEIGQAAPSLIVEASPEAL-ALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAK--NKK-HVEDMFF 380 (1013)
Q Consensus 305 ~~l~~~~~e~~~~~l~~~~~~~~-~ll~~ll~~~~~p~~d~~v~~~~l~FW~~l~~~l~~~~~~~~~--~~~-~~~~~~~ 380 (1013)
++.+..+.+.+...+.. ... .+++.++.....+ +.++...+++||..+.+........... ..+ ......+
T Consensus 245 ~~~l~~l~~~~~~~~~~---~l~~~l~~~~~~~~~~~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (861)
T 2bpt_A 245 FGCLCKIMSKYYTFMKP---YMEQALYALTIATMKSP--NDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFAL 319 (861)
T ss_dssp HHHHHHHHHHHGGGCHH---HHHHTHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 99999999998899999---88999999999987377--27899999999999998788643332103577325699999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 89999999999860668998889898888633999999999999999885070679999986331399999883034589
Q 001789 381 SVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETK 460 (1013)
Q Consensus 381 ~~~~~L~~~l~~k~~~p~~~~~~~~~~d~~d~f~~fR~~~~D~l~~~~~il~~~~~l~~~~~~~~~~~~~~~~W~~~Ea~ 460 (1013)
+++..++..++.++..++++ + +++++ ..|+...+++..+...+|.+ .+..++..+.... .+.+|+..+++
T Consensus 320 ~~~~~il~~ll~~l~~~~~d---~----~d~~~-~~r~~a~~~L~~l~~~~~~~-~~~~l~~~l~~~l-~~~~~~~r~~a 389 (861)
T 2bpt_A 320 SSIKDVVPNLLNLLTRQNED---P----EDDDW-NVSMSAGACLQLFAQNCGNH-ILEPVLEFVEQNI-TADNWRNREAA 389 (861)
T ss_dssp HHHHHHHHHHHHHTTCCCCC--------CCCCC-HHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHT-TCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCC---C----CCCCC-CHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHC-CCCCHHHHHHH
T ss_conf 99988999999998706653---0----12468-68999999999999874086-8999999999875-79972699999
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---HHCHHHHHHHHHHH
Q ss_conf 998874221013468766647899999983168535555679999988999998418889865---33249999999981
Q 001789 461 LFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAF---QTNARPLLLFLAAG 537 (1013)
Q Consensus 461 L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~---p~~L~~vl~~l~~~ 537 (1013)
++++++++++...+.-...++.++..+.....++... +|.++ ++++|+++.++..+ +.+++.+++.++.+
T Consensus 390 ~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~------vr~~a-~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~ 462 (861)
T 2bpt_A 390 VMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQ------VKETT-AWCIGRIADSVAESIDPQQHLPGVVQACLIG 462 (861)
T ss_dssp HHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHH------HHHHH-HHHHHHHHHHHGGGSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHH------HHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9999999859987888998999999999882899599------99999-9999999987354048788899999999997
Q ss_pred CCC-CCHHHHHHHHHHHHHHHHH----CCCCCCCCHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 176-8327999999999999932----0049975089999-999988726999452999999999997159907889999
Q 001789 538 ISE-AVSSNACASALRKICEDAS----ALIDEPSNLEILM-WIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNL 611 (1013)
Q Consensus 538 l~~-~~v~~~Aa~al~~lc~~c~----~~l~~~~~~~~l~-~~~~~l~~~~l~~~~~~~l~eai~~ii~~lp~~~~~~~~ 611 (1013)
+.+ +.++..|+.++..+|+.|+ ..+. | +++.+. .+...+.....+...+...+++++.++...+.. ...+
T Consensus 463 l~~~~~v~~~a~~al~~l~~~~~~~~~~~l~-~-~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~--~~~~ 538 (861)
T 2bpt_A 463 LQDHPKVATNCSWTIINLVEQLAEATPSPIY-N-FYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT--VAET 538 (861)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHHSSSSSCGGG-G-GHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG--GHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHCCCCCCHHHH-H-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHH--HHHH
T ss_conf 6447289999999999999862313542468-9-9999999999998575861589999999999999976265--6999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99987999999996640269987777961367777777887875210013335567889888854899999899999999
Q 001789 612 LARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKL 691 (1013)
Q Consensus 612 l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i 691 (1013)
+..++.++++.|..............+...... + -...+..++.+.+.+... +.++...+++.+..+
T Consensus 539 ~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~-~--~~~~~~~l~~l~~~~~~~----------~~~~~~~l~~~l~~~ 605 (861)
T 2bpt_A 539 SASISTFVMDKLGQTMSVDENQLTLEDAQSLQE-L--QSNILTVLAAVIRKSPSS----------VEPVADMLMGLFFRL 605 (861)
T ss_dssp HHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHH-H--HHHHHHHHHHHHHHCGGG----------TGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH-H--HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
T ss_conf 999999999999988753201388556777999-9--999999999999985563----------478999999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 97311041289999999999999975020465289999999974421077--6317877699999806899860159999
Q 001789 692 FRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQN--HECYIRTASVVIEEFGHKDEYGPLFVTT 769 (1013)
Q Consensus 692 ~~~~~~~~~~v~e~~c~~~k~~i~~~~~~~~~~l~~i~~~l~~~f~~~~~--~~~~L~l~~~li~~~~~~~~~~~~i~~l 769 (1013)
+.. ...+ .+.+.++.++.......+..+.|+++.++..+...+....+ ....+.+.+.++...|. ...+.+..+
T Consensus 606 l~~-~~~~-~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~l 681 (861)
T 2bpt_A 606 LEK-KDSA-FIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEE--DFRRYSDAM 681 (861)
T ss_dssp HHS-TTGG-GTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGG--GGHHHHHHH
T ss_pred HCC-CCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCH--HCCCHHHHH
T ss_conf 746-7887-579999999999999976609999999999999886556678999999999999987454--031119999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHCHHHHHHHHHHHHCCCC-----------HH
Q ss_conf 9997667889986157989989746999999999999772599871020222999999998722587-----------35
Q 001789 770 FERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMH-----------RG 838 (1013)
Q Consensus 770 ~~~l~~~t~l~~l~~~~~~~~~pDi~~~~f~l~~~~l~~~p~~~~~~~~~~l~~i~~~~l~~l~~~e-----------~~ 838 (1013)
+..+ +..+.. .+.+++++...+..+..+..+++..|. +.++.++...+.++.... ..
T Consensus 682 ~~~l-----~~~l~~---~~~~~~vr~~~~~~l~~l~~~~~~~~~----~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~ 749 (861)
T 2bpt_A 682 MNVL-----AQMISN---PNARRELKPAVLSVFGDIASNIGADFI----PYLNDIMALCVAAQNTKPENGTLEALDYQIK 749 (861)
T ss_dssp HHHH-----HHHHHC---TTCCTTHHHHHHHHHHHHHHHHGGGGH----HHHHHHHHHHHHHHTCCCSSSSHHHHHHHHH
T ss_pred HHHH-----HHHHCC---CCCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 9999-----997278---655676659999999999998405089----9999999999999736789997588999999
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 89999999999874
Q 001789 839 AALAAMSYLSCFLE 852 (1013)
Q Consensus 839 ~~~a~~~fl~~li~ 852 (1013)
...++++.+..++.
T Consensus 750 vr~~~l~~~~~i~~ 763 (861)
T 2bpt_A 750 VLEAVLDAYVGIVA 763 (861)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999999
Done!