BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001790
(1012 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 108/254 (42%), Gaps = 16/254 (6%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+VS V +SP+G ++ + LI+++ G+ D + I H ++D+A++ + LL
Sbjct: 47 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 102
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +K+W++ SG+ L +GH Y C + I S + D ++ W D
Sbjct: 103 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW--D 157
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ P H + + ++ DGS + S +S DG W+ + G +T
Sbjct: 158 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDG--LCRIWDTASGQCLKTLIDDD 213
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
V+F + LA D+ +K WD L + FS G
Sbjct: 214 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 273
Query: 645 AVTTADNGFKILAN 658
V+ +++ + N
Sbjct: 274 IVSGSEDNLVYIWN 287
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 26/246 (10%)
Query: 383 KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR 442
K KIW A F+ +I + +S VAWS D N + A ++++ + L+
Sbjct: 67 KLIKIW--GAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 123
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSIC 501
+ H V F + L +V+ D+ +++W++ +G+ L H PV ++
Sbjct: 124 ---TLKGHSNYVFCCNFNPQSNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV- 177
Query: 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSR-----VDYDAPGHWCTTMLYSADGSRLFSC 556
H + I S++ DG + W DT + +D D P + + +S +G + +
Sbjct: 178 -HFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAA 232
Query: 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVG-EDSQIKFWDM 614
D+ L W+ S+G +TY G + + + F T ++ G ED+ + W++
Sbjct: 233 TL----DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 288
Query: 615 DNVNIL 620
I+
Sbjct: 289 QTKEIV 294
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 13/146 (8%)
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
+IWD A+ + I D P VS V +SP+G Y+ A + ++L+ Y+ L+ ++
Sbjct: 196 RIWDTASGQC-LKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 253
Query: 446 QIDAHVGAVNDLAFAYPNKLLC----VVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSI 500
G N+ + N + +V+ +D L+ +W L +++ +GH V S
Sbjct: 254 ------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 307
Query: 501 CPHHKENIQFIFSTAIDGKIKAWLYD 526
H ENI + D IK W D
Sbjct: 308 ACHPTENIIASAALENDKTIKLWKSD 333
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 8/144 (5%)
Query: 832 EAVPCIALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 890
+AV + S N ++ S++ K I ++ K T + +A+ D+N++
Sbjct: 46 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDSNLLVS 104
Query: 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKR 950
++D T+ I++V + LKGH + F+ N++VS D + +W + T +
Sbjct: 105 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 164
Query: 951 KSVTIHIPAGKTPTGDTRVQFNAD 974
K+ +PA P + V FN D
Sbjct: 165 KT----LPAHSDPV--SAVHFNRD 182
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 834 VPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS--PPPASTFLAFHPQDNNIIAI 890
V + S N Y+++AT + L++ K + T+ F F I
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 276
Query: 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGA--DAQLCVWSID 945
G+ED+ ++I+N++ E+ KL+GH + A + NI+ S+ D + +W D
Sbjct: 277 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 333
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 837 IALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895
+A S + + ++SA+ K + ++++ + K + T F+PQ +N+I G+ D
Sbjct: 93 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDE 151
Query: 896 TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942
++ I++V+ + L H ++ + F+ +++VSS D +W
Sbjct: 152 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 93/191 (48%), Gaps = 9/191 (4%)
Query: 831 EEAVPCIALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNII- 888
E+ V C A S +DSY+ + + K + +++ T K++ T+ F + N+++
Sbjct: 664 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLL 723
Query: 889 AIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWE 948
A G+ D + ++++ E ++ + GH + FS +L S AD L +W + +
Sbjct: 724 ATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN 783
Query: 949 KRKSVTIH--IPAGKTPTGDTRV-----QFNADQVRMLVVHETQLAIYDASKMERIRQVG 1001
+RKS+ + + + P D V ++AD +++V + ++ ++D + ++
Sbjct: 784 ERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIH 843
Query: 1002 SPHICSIIFCN 1012
+ H +I +C+
Sbjct: 844 TGHHSTIQYCD 854
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 44/119 (36%), Gaps = 11/119 (9%)
Query: 535 DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFD 594
DA H C +S DG R+ SCG K F E E IK + F
Sbjct: 623 DAVYHAC----FSQDGQRIASCGADKTLQVFKAETGEKLLDIKA-----HEDEVLCCAFS 673
Query: 595 TTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653
+ ++ D ++K WD ++ + D N F+ + N L + T N F
Sbjct: 674 SDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNC--CHFTNKSNHLLLATGSNDF 730
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 852 GKISL--FNMMTFKVMTTFM-SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK 908
G++ L N T K ++ + P + + A QD IA D T+ ++ E
Sbjct: 598 GRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKL 657
Query: 909 SKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942
+K H+ + AFS+ + + + AD ++ +W
Sbjct: 658 LDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW 691
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 888 IAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT 946
+A G ED I I + + V S GH+K + + F+ L+SS D+ + VW+ T
Sbjct: 983 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT 1041
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/115 (19%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 829 NLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPAST-FLAFHPQDNNI 887
++E V C + S + ++ A K+ LF++ T ++ + ++ + F P D+ +
Sbjct: 803 DVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH-L 861
Query: 888 IAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942
I + ++N+ + +GH + G+ FS + +++ D + VW
Sbjct: 862 AVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW 916
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 60/156 (38%), Gaps = 8/156 (5%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+V +S DG + +Q++ L I AH V AF+ +
Sbjct: 624 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLD---IKAHEDEVLCCAFSSDDSY-- 678
Query: 468 VVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
+ TC DK +K+W+ +G+ + ++ H V +K N + + + D +K W +
Sbjct: 679 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 738
Query: 527 TMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562
R + +S D L SC S DG
Sbjct: 739 QKECRNTMFGHTNSVNHCRFSPDDELLASC--SADG 772
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 894 DSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSID 945
D T+ ++NV ++ HQ + A S+ S+ AD +WS D
Sbjct: 1071 DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD 1122
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 93/191 (48%), Gaps = 9/191 (4%)
Query: 831 EEAVPCIALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNII- 888
E+ V C A S +DSY+ + + K + +++ T K++ T+ F + N+++
Sbjct: 657 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLL 716
Query: 889 AIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWE 948
A G+ D + ++++ E ++ + GH + FS +L S AD L +W + +
Sbjct: 717 ATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN 776
Query: 949 KRKSVTIH--IPAGKTPTGDTRV-----QFNADQVRMLVVHETQLAIYDASKMERIRQVG 1001
+RKS+ + + + P D V ++AD +++V + ++ ++D + ++
Sbjct: 777 ERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIH 836
Query: 1002 SPHICSIIFCN 1012
+ H +I +C+
Sbjct: 837 TGHHSTIQYCD 847
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 44/119 (36%), Gaps = 11/119 (9%)
Query: 535 DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFD 594
DA H C +S DG R+ SCG K F E E IK + F
Sbjct: 616 DAVYHAC----FSQDGQRIASCGADKTLQVFKAETGEKLLDIKA-----HEDEVLCCAFS 666
Query: 595 TTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653
+ ++ D ++K WD ++ + D N F+ + N L + T N F
Sbjct: 667 SDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNC--CHFTNKSNHLLLATGSNDF 723
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 852 GKISL--FNMMTFKVMTTFM-SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK 908
G++ L N T K ++ + P + + A QD IA D T+ ++ E
Sbjct: 591 GRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKL 650
Query: 909 SKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942
+K H+ + AFS+ + + + AD ++ +W
Sbjct: 651 LDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW 684
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 888 IAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT 946
+A G ED I I + + V S GH+K + + F+ L+SS D+ + VW+ T
Sbjct: 976 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT 1034
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/115 (19%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 829 NLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPAST-FLAFHPQDNNI 887
++E V C + S + ++ A K+ LF++ T ++ + ++ + F P D+ +
Sbjct: 796 DVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH-L 854
Query: 888 IAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942
I + ++N+ + +GH + G+ FS + +++ D + VW
Sbjct: 855 AVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW 909
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 60/156 (38%), Gaps = 8/156 (5%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+V +S DG + +Q++ L I AH V AF+ +
Sbjct: 617 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLD---IKAHEDEVLCCAFSSDDSY-- 671
Query: 468 VVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
+ TC DK +K+W+ +G+ + ++ H V +K N + + + D +K W +
Sbjct: 672 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731
Query: 527 TMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562
R + +S D L SC S DG
Sbjct: 732 QKECRNTMFGHTNSVNHCRFSPDDELLASC--SADG 765
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 894 DSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSID 945
D T+ ++NV ++ HQ + A S+ S+ AD +WS D
Sbjct: 1064 DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD 1115
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 96/209 (45%), Gaps = 16/209 (7%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+VS V +SP+G ++ + LI+++ G+ D + I H ++D+A++ + LL
Sbjct: 49 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 104
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +K+W++ SG+ L +GH Y C + I S + D ++ W D
Sbjct: 105 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW--D 159
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ P H + + ++ DGS + S +S DG W+ + G +T
Sbjct: 160 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDG--LCRIWDTASGQCLKTLIDDD 215
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613
V+F + LA D+ +K WD
Sbjct: 216 NPPVSFVKFSPNGKYILAATLDNTLKLWD 244
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 26/246 (10%)
Query: 383 KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR 442
K KIW A F+ +I + +S VAWS D N + A ++++ + L+
Sbjct: 69 KLIKIW--GAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 125
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSIC 501
+ H V F + L +V+ D+ +++W++ +G+ L H PV ++
Sbjct: 126 ---TLKGHSNYVFCCNFNPQSNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV- 179
Query: 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSR-----VDYDAPGHWCTTMLYSADGSRLFSC 556
H + I S++ DG + W DT + +D D P + + +S +G + +
Sbjct: 180 -HFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAA 234
Query: 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVG-EDSQIKFWDM 614
D+ L W+ S+G +TY G + + + F T ++ G ED+ + W++
Sbjct: 235 TL----DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 290
Query: 615 DNVNIL 620
I+
Sbjct: 291 QTKEIV 296
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 13/146 (8%)
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
+IWD A+ + I D P VS V +SP+G Y+ A + ++L+ Y+ L+ ++
Sbjct: 198 RIWDTASGQC-LKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 255
Query: 446 QIDAHVGAVNDLAFAYPNKLLC----VVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSI 500
G N+ + N + +V+ +D L+ +W L +++ +GH V S
Sbjct: 256 ------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 309
Query: 501 CPHHKENIQFIFSTAIDGKIKAWLYD 526
H ENI + D IK W D
Sbjct: 310 ACHPTENIIASAALENDKTIKLWKSD 335
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 8/144 (5%)
Query: 832 EAVPCIALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 890
+AV + S N ++ S++ K I ++ K T + +A+ D+N++
Sbjct: 48 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDSNLLVS 106
Query: 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKR 950
++D T+ I++V + LKGH + F+ N++VS D + +W + T +
Sbjct: 107 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 166
Query: 951 KSVTIHIPAGKTPTGDTRVQFNAD 974
K+ +PA P + V FN D
Sbjct: 167 KT----LPAHSDPV--SAVHFNRD 184
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 834 VPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS--PPPASTFLAFHPQDNNIIAI 890
V + S N Y+++AT + L++ K + T+ F F I
Sbjct: 219 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 278
Query: 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGA--DAQLCVWSID 945
G+ED+ ++I+N++ E+ KL+GH + A + NI+ S+ D + +W D
Sbjct: 279 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 335
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 837 IALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895
+A S + + ++SA+ K + ++++ + K + T F+PQ +N+I G+ D
Sbjct: 95 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDE 153
Query: 896 TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942
++ I++V+ + L H ++ + F+ +++VSS D +W
Sbjct: 154 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 200
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 108/254 (42%), Gaps = 16/254 (6%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+VS V +SP+G ++ + LI+++ G+ D + I H ++D+A++ + LL
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +K+W++ SG+ L +GH Y C + I S + D ++ W D
Sbjct: 87 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW--D 141
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ P H + + ++ DGS + S +S DG W+ + G +T
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDG--LCRIWDTASGQCLKTLIDDD 197
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
V+F + LA D+ +K WD L + FS G
Sbjct: 198 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 257
Query: 645 AVTTADNGFKILAN 658
V+ +++ + N
Sbjct: 258 IVSGSEDNLVYIWN 271
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 26/246 (10%)
Query: 383 KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR 442
K KIW A F+ +I + +S VAWS D N + A ++++ + L+
Sbjct: 51 KLIKIW--GAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 107
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSIC 501
+ H V F + L +V+ D+ +++W++ +G+ L H PV ++
Sbjct: 108 ---TLKGHSNYVFCCNFNPQSNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV- 161
Query: 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSR-----VDYDAPGHWCTTMLYSADGSRLFSC 556
H + I S++ DG + W DT + +D D P + + +S +G + +
Sbjct: 162 -HFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAA 216
Query: 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVG-EDSQIKFWDM 614
D+ L W+ S+G +TY G + + + F T ++ G ED+ + W++
Sbjct: 217 TL----DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
Query: 615 DNVNIL 620
I+
Sbjct: 273 QTKEIV 278
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 8/144 (5%)
Query: 832 EAVPCIALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 890
+AV + S N ++ S++ K I ++ K T + +A+ D+N++
Sbjct: 30 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDSNLLVS 88
Query: 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKR 950
++D T+ I++V + LKGH + F+ N++VS D + +W + T +
Sbjct: 89 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 148
Query: 951 KSVTIHIPAGKTPTGDTRVQFNAD 974
K+ +PA P + V FN D
Sbjct: 149 KT----LPAHSDPV--SAVHFNRD 166
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 13/146 (8%)
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
+IWD A+ + I D P VS V +SP+G Y+ A + ++L+ Y+ L+ ++
Sbjct: 180 RIWDTASGQC-LKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 237
Query: 446 QIDAHVGAVNDLAFAYPNKLLC----VVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSI 500
G N+ + N + +V+ +D L+ +W L +++ +GH V S
Sbjct: 238 ------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 291
Query: 501 CPHHKENIQFIFSTAIDGKIKAWLYD 526
H ENI + D IK W D
Sbjct: 292 ACHPTENIIASAALENDKTIKLWKSD 317
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 834 VPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS--PPPASTFLAFHPQDNNIIAI 890
V + S N Y+++AT + L++ K + T+ F F I
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 260
Query: 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGA--DAQLCVWSID 945
G+ED+ ++I+N++ E+ KL+GH + A + NI+ S+ D + +W D
Sbjct: 261 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/163 (20%), Positives = 76/163 (46%), Gaps = 6/163 (3%)
Query: 837 IALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895
+A S + + ++SA+ K + ++++ + K + T F+PQ +N+I G+ D
Sbjct: 77 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDE 135
Query: 896 TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTI 955
++ I++V+ + L H ++ + F+ +++VSS D +W + + K++
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-- 193
Query: 956 HIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIR 998
I P + N + + T L ++D SK + ++
Sbjct: 194 -IDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKGKCLK 234
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 907 VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGD 966
+K L GH K ++ + FS + L SS AD + +W + K+++ H G
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH------KLGI 74
Query: 967 TRVQFNADQVRMLVVHETQ-LAIYDASKMERIRQVGSPHICSIIFCN 1012
+ V +++D ++ + + L I+D S + ++ + H + CN
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCN 120
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 96/209 (45%), Gaps = 16/209 (7%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+VS V +SP+G ++ + LI+++ G+ D + I H ++D+A++ + LL
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +K+W++ SG+ L +GH Y C + I S + D ++ W D
Sbjct: 87 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW--D 141
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ P H + + ++ DGS + S +S DG W+ + G +T
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDG--LCRIWDTASGQCLKTLIDDD 197
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613
V+F + LA D+ +K WD
Sbjct: 198 NPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 26/246 (10%)
Query: 383 KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR 442
K KIW A F+ +I + +S VAWS D N + A ++++ + L+
Sbjct: 51 KLIKIW--GAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 107
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSIC 501
+ H V F + L +V+ D+ +++W++ +G+ L H PV ++
Sbjct: 108 ---TLKGHSNYVFCCNFNPQSNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV- 161
Query: 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSR-----VDYDAPGHWCTTMLYSADGSRLFSC 556
H + I S++ DG + W DT + +D D P + + +S +G + +
Sbjct: 162 -HFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAA 216
Query: 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVG-EDSQIKFWDM 614
D+ L W+ S+G +TY G + + + F T ++ G ED+ + W++
Sbjct: 217 TL----DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
Query: 615 DNVNIL 620
I+
Sbjct: 273 QTKEIV 278
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 8/144 (5%)
Query: 832 EAVPCIALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 890
+AV + S N ++ S++ K I ++ K T + +A+ D+N++
Sbjct: 30 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDSNLLVS 88
Query: 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKR 950
++D T+ I++V + LKGH + F+ N++VS D + +W + T +
Sbjct: 89 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 148
Query: 951 KSVTIHIPAGKTPTGDTRVQFNAD 974
K+ +PA P + V FN D
Sbjct: 149 KT----LPAHSDPV--SAVHFNRD 166
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 17/148 (11%)
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
+IWD A+ + I D P VS V +SP+G Y+ A + ++L+ Y+ L+ ++
Sbjct: 180 RIWDTASGQC-LKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 237
Query: 446 QIDAHVGAVNDLAFAYPNKLLC----VVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSI 500
G N+ + N + +V+ +D L+ +W L +++ +GH V S
Sbjct: 238 ------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 291
Query: 501 CPHHKENIQFIFSTAI--DGKIKAWLYD 526
H ENI I S A+ D IK W D
Sbjct: 292 ACHPTENI--IASAALENDKTIKLWKSD 317
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 834 VPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS--PPPASTFLAFHPQDNNIIAI 890
V + S N Y+++AT + L++ K + T+ F F I
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 260
Query: 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGA--DAQLCVWSID 945
G+ED+ ++I+N++ E+ KL+GH + A + NI+ S+ D + +W D
Sbjct: 261 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 837 IALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895
+A S + + ++SA+ K + ++++ + K + T F+PQ +N+I G+ D
Sbjct: 77 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDE 135
Query: 896 TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942
++ I++V+ + L H ++ + F+ +++VSS D +W
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 907 VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGD 966
+K L GH K ++ + FS + L SS AD + +W + K+++ H G
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH------KLGI 74
Query: 967 TRVQFNADQVRMLVVHETQ-LAIYDASKMERIRQVGSPHICSIIFCN 1012
+ V +++D ++ + + L I+D S + ++ + H + CN
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCN 120
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 108/254 (42%), Gaps = 16/254 (6%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+VS V +SP+G ++ + LI+++ G+ D + I H ++D+A++ + LL
Sbjct: 25 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 80
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +K+W++ SG+ L +GH Y C + I S + D ++ W D
Sbjct: 81 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW--D 135
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ P H + + ++ DGS + S +S DG W+ + G +T
Sbjct: 136 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDG--LCRIWDTASGQCLKTLIDDD 191
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
V+F + LA D+ +K WD L + FS G
Sbjct: 192 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 251
Query: 645 AVTTADNGFKILAN 658
V+ +++ + N
Sbjct: 252 IVSGSEDNLVYIWN 265
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 26/246 (10%)
Query: 383 KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR 442
K KIW A F+ +I + +S VAWS D N + A ++++ + L+
Sbjct: 45 KLIKIW--GAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 101
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSIC 501
+ H V F + L +V+ D+ +++W++ +G+ L H PV ++
Sbjct: 102 ---TLKGHSNYVFCCNFNPQSNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV- 155
Query: 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSR-----VDYDAPGHWCTTMLYSADGSRLFSC 556
H + I S++ DG + W DT + +D D P + + +S +G + +
Sbjct: 156 -HFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAA 210
Query: 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVG-EDSQIKFWDM 614
D+ L W+ S+G +TY G + + + F T ++ G ED+ + W++
Sbjct: 211 TL----DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 266
Query: 615 DNVNIL 620
I+
Sbjct: 267 QTKEIV 272
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 8/144 (5%)
Query: 832 EAVPCIALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 890
+AV + S N ++ S++ K I ++ K T + +A+ D+N++
Sbjct: 24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDSNLLVS 82
Query: 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKR 950
++D T+ I++V + LKGH + F+ N++VS D + +W + T +
Sbjct: 83 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 142
Query: 951 KSVTIHIPAGKTPTGDTRVQFNAD 974
K+ +PA P + V FN D
Sbjct: 143 KT----LPAHSDPV--SAVHFNRD 160
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 17/148 (11%)
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
+IWD A+ + I D P VS V +SP+G Y+ A + ++L+ Y+ L+ ++
Sbjct: 174 RIWDTASGQC-LKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 231
Query: 446 QIDAHVGAVNDLAFAYPNKLLC----VVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSI 500
G N+ + N + +V+ +D L+ +W L +++ +GH V S
Sbjct: 232 ------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 285
Query: 501 CPHHKENIQFIFSTAI--DGKIKAWLYD 526
H ENI I S A+ D IK W D
Sbjct: 286 ACHPTENI--IASAALENDKTIKLWKSD 311
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 834 VPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS--PPPASTFLAFHPQDNNIIAI 890
V + S N Y+++AT + L++ K + T+ F F I
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254
Query: 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGA--DAQLCVWSID 945
G+ED+ ++I+N++ E+ KL+GH + A + NI+ S+ D + +W D
Sbjct: 255 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 837 IALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895
+A S + + ++SA+ K + ++++ + K + T F+PQ +N+I G+ D
Sbjct: 71 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDE 129
Query: 896 TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942
++ I++V+ + L H ++ + F+ +++VSS D +W
Sbjct: 130 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 907 VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGD 966
+K L GH K ++ + FS + L SS AD + +W + K+++ H G
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH------KLGI 68
Query: 967 TRVQFNADQVRMLVVHETQ-LAIYDASKMERIRQVGSPHICSIIFCN 1012
+ V +++D ++ + + L I+D S + ++ + H + CN
Sbjct: 69 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCN 114
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 108/254 (42%), Gaps = 16/254 (6%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+VS V +SP+G ++ + LI+++ G+ D + I H ++D+A++ + LL
Sbjct: 21 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 76
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +K+W++ SG+ L +GH Y C + I S + D ++ W D
Sbjct: 77 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW--D 131
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ P H + + ++ DGS + S +S DG W+ + G +T
Sbjct: 132 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDG--LCRIWDTASGQCLKTLIDDD 187
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
V+F + LA D+ +K WD L + FS G
Sbjct: 188 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 247
Query: 645 AVTTADNGFKILAN 658
V+ +++ + N
Sbjct: 248 IVSGSEDNLVYIWN 261
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 26/246 (10%)
Query: 383 KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR 442
K KIW A F+ +I + +S VAWS D N + A ++++ + L+
Sbjct: 41 KLIKIW--GAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 97
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSIC 501
+ H V F + L +V+ D+ +++W++ +G+ L H PV ++
Sbjct: 98 ---TLKGHSNYVFCCNFNPQSNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV- 151
Query: 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSR-----VDYDAPGHWCTTMLYSADGSRLFSC 556
H + I S++ DG + W DT + +D D P + + +S +G + +
Sbjct: 152 -HFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAA 206
Query: 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVG-EDSQIKFWDM 614
D+ L W+ S+G +TY G + + + F T ++ G ED+ + W++
Sbjct: 207 TL----DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 262
Query: 615 DNVNIL 620
I+
Sbjct: 263 QTKEIV 268
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 8/144 (5%)
Query: 832 EAVPCIALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 890
+AV + S N ++ S++ K I ++ K T + +A+ D+N++
Sbjct: 20 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDSNLLVS 78
Query: 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKR 950
++D T+ I++V + LKGH + F+ N++VS D + +W + T +
Sbjct: 79 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 138
Query: 951 KSVTIHIPAGKTPTGDTRVQFNAD 974
K+ +PA P + V FN D
Sbjct: 139 KT----LPAHSDPV--SAVHFNRD 156
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 17/148 (11%)
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
+IWD A+ + I D P VS V +SP+G Y+ A + ++L+ Y+ L+ ++
Sbjct: 170 RIWDTASGQC-LKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 227
Query: 446 QIDAHVGAVNDLAFAYPNKLLC----VVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSI 500
G N+ + N + +V+ +D L+ +W L +++ +GH V S
Sbjct: 228 ------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 281
Query: 501 CPHHKENIQFIFSTAI--DGKIKAWLYD 526
H ENI I S A+ D IK W D
Sbjct: 282 ACHPTENI--IASAALENDKTIKLWKSD 307
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 834 VPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS--PPPASTFLAFHPQDNNIIAI 890
V + S N Y+++AT + L++ K + T+ F F I
Sbjct: 191 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 250
Query: 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGA--DAQLCVWSID 945
G+ED+ ++I+N++ E+ KL+GH + A + NI+ S+ D + +W D
Sbjct: 251 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 307
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 837 IALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895
+A S + + ++SA+ K + ++++ + K + T F+PQ N I++ G+ D
Sbjct: 67 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS-GSFDE 125
Query: 896 TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942
++ I++V+ + L H ++ + F+ +++VSS D +W
Sbjct: 126 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 172
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 907 VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGD 966
+K L GH K ++ + FS + L SS AD + +W + K+++ H G
Sbjct: 11 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH------KLGI 64
Query: 967 TRVQFNADQVRMLVVHETQ-LAIYDASKMERIRQVGSPHICSIIFCN 1012
+ V +++D ++ + + L I+D S + ++ + H + CN
Sbjct: 65 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCN 110
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 108/254 (42%), Gaps = 16/254 (6%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+VS V +SP+G ++ + LI+++ G+ D + I H ++D+A++ + LL
Sbjct: 25 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 80
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +K+W++ SG+ L +GH Y C + I S + D ++ W D
Sbjct: 81 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW--D 135
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ P H + + ++ DGS + S +S DG W+ + G +T
Sbjct: 136 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDG--LCRIWDTASGQCLKTLIDDD 191
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
V+F + LA D+ +K WD L + FS G
Sbjct: 192 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 251
Query: 645 AVTTADNGFKILAN 658
V+ +++ + N
Sbjct: 252 IVSGSEDNLVYIWN 265
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 26/246 (10%)
Query: 383 KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR 442
K KIW A F+ +I + +S VAWS D N + A ++++ + L+
Sbjct: 45 KLIKIW--GAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 101
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSIC 501
+ H V F + L +V+ D+ +++W++ +G+ L H PV ++
Sbjct: 102 ---TLKGHSNYVFCCNFNPQSNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV- 155
Query: 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSR-----VDYDAPGHWCTTMLYSADGSRLFSC 556
H + I S++ DG + W DT + +D D P + + +S +G + +
Sbjct: 156 -HFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAA 210
Query: 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVG-EDSQIKFWDM 614
D+ L W+ S+G +TY G + + + F T ++ G ED+ + W++
Sbjct: 211 TL----DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 266
Query: 615 DNVNIL 620
I+
Sbjct: 267 QTKEIV 272
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 8/144 (5%)
Query: 832 EAVPCIALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 890
+AV + S N ++ S++ K I ++ K T + +A+ D+N++
Sbjct: 24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDSNLLVS 82
Query: 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKR 950
++D T+ I++V + LKGH + F+ N++VS D + +W + T +
Sbjct: 83 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 142
Query: 951 KSVTIHIPAGKTPTGDTRVQFNAD 974
K+ +PA P + V FN D
Sbjct: 143 KT----LPAHSDPV--SAVHFNRD 160
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 17/148 (11%)
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
+IWD A+ + I D P VS V +SP+G Y+ A + ++L+ Y+ L+ ++
Sbjct: 174 RIWDTASGQC-LKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 231
Query: 446 QIDAHVGAVNDLAFAYPNKLLC----VVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSI 500
G N+ + N + +V+ +D L+ +W L +++ +GH V S
Sbjct: 232 ------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 285
Query: 501 CPHHKENIQFIFSTAI--DGKIKAWLYD 526
H ENI I S A+ D IK W D
Sbjct: 286 ACHPTENI--IASAALENDKTIKLWKSD 311
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 834 VPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS--PPPASTFLAFHPQDNNIIAI 890
V + S N Y+++AT + L++ K + T+ F F I
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254
Query: 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGA--DAQLCVWSID 945
G+ED+ ++I+N++ E+ KL+GH + A + NI+ S+ D + +W D
Sbjct: 255 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 837 IALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895
+A S + + ++SA+ K + ++++ + K + T F+PQ +N+I G+ D
Sbjct: 71 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDE 129
Query: 896 TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942
++ I++V+ + L H ++ + F+ +++VSS D +W
Sbjct: 130 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 907 VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGD 966
+K L GH K ++ + FS + L SS AD + +W + K+++ H G
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH------KLGI 68
Query: 967 TRVQFNADQVRMLVVHETQ-LAIYDASKMERIRQVGSPHICSIIFCN 1012
+ V +++D ++ + + L I+D S + ++ + H + CN
Sbjct: 69 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCN 114
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 108/254 (42%), Gaps = 16/254 (6%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+VS V +SP+G ++ + LI+++ G+ D + I H ++D+A++ + LL
Sbjct: 26 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 81
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +K+W++ SG+ L +GH Y C + I S + D ++ W D
Sbjct: 82 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW--D 136
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ P H + + ++ DGS + S +S DG W+ + G +T
Sbjct: 137 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDG--LCRIWDTASGQCLKTLIDDD 192
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
V+F + LA D+ +K WD L + FS G
Sbjct: 193 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 252
Query: 645 AVTTADNGFKILAN 658
V+ +++ + N
Sbjct: 253 IVSGSEDNLVYIWN 266
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 26/246 (10%)
Query: 383 KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR 442
K KIW A F+ +I + +S VAWS D N + A ++++ + L+
Sbjct: 46 KLIKIW--GAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 102
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSIC 501
+ H V F + L +V+ D+ +++W++ +G+ L H PV ++
Sbjct: 103 ---TLKGHSNYVFCCNFNPQSNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV- 156
Query: 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSR-----VDYDAPGHWCTTMLYSADGSRLFSC 556
H + I S++ DG + W DT + +D D P + + +S +G + +
Sbjct: 157 -HFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAA 211
Query: 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVG-EDSQIKFWDM 614
D+ L W+ S+G +TY G + + + F T ++ G ED+ + W++
Sbjct: 212 TL----DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 267
Query: 615 DNVNIL 620
I+
Sbjct: 268 QTKEIV 273
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 8/144 (5%)
Query: 832 EAVPCIALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 890
+AV + S N ++ S++ K I ++ K T + +A+ D+N++
Sbjct: 25 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDSNLLVS 83
Query: 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKR 950
++D T+ I++V + LKGH + F+ N++VS D + +W + T +
Sbjct: 84 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 143
Query: 951 KSVTIHIPAGKTPTGDTRVQFNAD 974
K+ +PA P + V FN D
Sbjct: 144 KT----LPAHSDPV--SAVHFNRD 161
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 17/148 (11%)
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
+IWD A+ + I D P VS V +SP+G Y+ A + ++L+ Y+ L+ ++
Sbjct: 175 RIWDTASGQC-LKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 232
Query: 446 QIDAHVGAVNDLAFAYPNKLLC----VVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSI 500
G N+ + N + +V+ +D L+ +W L +++ +GH V S
Sbjct: 233 ------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 286
Query: 501 CPHHKENIQFIFSTAI--DGKIKAWLYD 526
H ENI I S A+ D IK W D
Sbjct: 287 ACHPTENI--IASAALENDKTIKLWKSD 312
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 834 VPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS--PPPASTFLAFHPQDNNIIAI 890
V + S N Y+++AT + L++ K + T+ F F I
Sbjct: 196 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 255
Query: 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGA--DAQLCVWSID 945
G+ED+ ++I+N++ E+ KL+GH + A + NI+ S+ D + +W D
Sbjct: 256 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 312
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 837 IALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895
+A S + + ++SA+ K + ++++ + K + T F+PQ N I++ G+ D
Sbjct: 72 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS-GSFDE 130
Query: 896 TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942
++ I++V+ + L H ++ + F+ +++VSS D +W
Sbjct: 131 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 177
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 907 VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGD 966
+K L GH K ++ + FS + L SS AD + +W + K+++ H G
Sbjct: 16 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH------KLGI 69
Query: 967 TRVQFNADQVRMLVVHETQ-LAIYDASKMERIRQVGSPHICSIIFCN 1012
+ V +++D ++ + + L I+D S + ++ + H + CN
Sbjct: 70 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCN 115
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 96/209 (45%), Gaps = 16/209 (7%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+VS V +SP+G ++ + LI+++ G+ D + I H ++D+A++ + LL
Sbjct: 30 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 85
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +K+W++ SG+ L +GH Y C + I S + D ++ W D
Sbjct: 86 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW--D 140
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ P H + + ++ DGS + S +S DG W+ + G +T
Sbjct: 141 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDG--LCRIWDTASGQCLKTLIDDD 196
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613
V+F + LA D+ +K WD
Sbjct: 197 NPPVSFVKFSPNGKYILAATLDNTLKLWD 225
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 26/246 (10%)
Query: 383 KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR 442
K KIW A F+ +I + +S VAWS D N + A ++++ + L+
Sbjct: 50 KLIKIW--GAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 106
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSIC 501
+ H V F + L +V+ D+ +++W++ +G+ L H PV ++
Sbjct: 107 ---TLKGHSNYVFCCNFNPQSNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV- 160
Query: 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSR-----VDYDAPGHWCTTMLYSADGSRLFSC 556
H + I S++ DG + W DT + +D D P + + +S +G + +
Sbjct: 161 -HFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAA 215
Query: 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVG-EDSQIKFWDM 614
D+ L W+ S+G +TY G + + + F T ++ G ED+ + W++
Sbjct: 216 TL----DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 271
Query: 615 DNVNIL 620
I+
Sbjct: 272 QTKEIV 277
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 8/144 (5%)
Query: 832 EAVPCIALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 890
+AV + S N ++ S++ K I ++ K T + +A+ D+N++
Sbjct: 29 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDSNLLVS 87
Query: 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKR 950
++D T+ I++V + LKGH + F+ N++VS D + +W + T +
Sbjct: 88 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 147
Query: 951 KSVTIHIPAGKTPTGDTRVQFNAD 974
K+ +PA P + V FN D
Sbjct: 148 KT----LPAHSDPV--SAVHFNRD 165
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 17/148 (11%)
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
+IWD A+ + I D P VS V +SP+G Y+ A + ++L+ Y+ L+ ++
Sbjct: 179 RIWDTASGQC-LKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 236
Query: 446 QIDAHVGAVNDLAFAYPNKLLC----VVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSI 500
G N+ + N + +V+ +D L+ +W L +++ +GH V S
Sbjct: 237 ------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 290
Query: 501 CPHHKENIQFIFSTAI--DGKIKAWLYD 526
H ENI I S A+ D IK W D
Sbjct: 291 ACHPTENI--IASAALENDKTIKLWKSD 316
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 834 VPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS--PPPASTFLAFHPQDNNIIAI 890
V + S N Y+++AT + L++ K + T+ F F I
Sbjct: 200 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 259
Query: 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGA--DAQLCVWSID 945
G+ED+ ++I+N++ E+ KL+GH + A + NI+ S+ D + +W D
Sbjct: 260 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 316
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 837 IALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895
+A S + + ++SA+ K + ++++ + K + T F+PQ N I++ G+ D
Sbjct: 76 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS-GSFDE 134
Query: 896 TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942
++ I++V+ + L H ++ + F+ +++VSS D +W
Sbjct: 135 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 181
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 907 VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGD 966
+K L GH K ++ + FS + L SS AD + +W + K+++ H G
Sbjct: 20 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH------KLGI 73
Query: 967 TRVQFNADQVRMLVVHETQ-LAIYDASKMERIRQVGSPHICSIIFCN 1012
+ V +++D ++ + + L I+D S + ++ + H + CN
Sbjct: 74 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCN 119
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 96/209 (45%), Gaps = 16/209 (7%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+VS V +SP+G ++ + LI+++ G+ D + I H ++D+A++ + LL
Sbjct: 24 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 79
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +K+W++ SG+ L +GH Y C + I S + D ++ W D
Sbjct: 80 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW--D 134
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ P H + + ++ DGS + S +S DG W+ + G +T
Sbjct: 135 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDG--LCRIWDTASGQCLKTLIDDD 190
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613
V+F + LA D+ +K WD
Sbjct: 191 NPPVSFVKFSPNGKYILAATLDNTLKLWD 219
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 26/246 (10%)
Query: 383 KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR 442
K KIW A F+ +I + +S VAWS D N + A ++++ + L+
Sbjct: 44 KLIKIW--GAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 100
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSIC 501
+ H V F + L +V+ D+ +++W++ +G+ L H PV ++
Sbjct: 101 ---TLKGHSNYVFCCNFNPQSNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV- 154
Query: 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSR-----VDYDAPGHWCTTMLYSADGSRLFSC 556
H + I S++ DG + W DT + +D D P + + +S +G + +
Sbjct: 155 -HFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAA 209
Query: 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVG-EDSQIKFWDM 614
D+ L W+ S+G +TY G + + + F T ++ G ED+ + W++
Sbjct: 210 TL----DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 265
Query: 615 DNVNIL 620
I+
Sbjct: 266 QTKEIV 271
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 8/144 (5%)
Query: 832 EAVPCIALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 890
+AV + S N ++ S++ K I ++ K T + +A+ D+N++
Sbjct: 23 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDSNLLVS 81
Query: 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKR 950
++D T+ I++V + LKGH + F+ N++VS D + +W + T +
Sbjct: 82 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 141
Query: 951 KSVTIHIPAGKTPTGDTRVQFNAD 974
K+ +PA P + V FN D
Sbjct: 142 KT----LPAHSDPV--SAVHFNRD 159
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 17/148 (11%)
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
+IWD A+ + I D P VS V +SP+G Y+ A + ++L+ Y+ L+ ++
Sbjct: 173 RIWDTASGQC-LKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 230
Query: 446 QIDAHVGAVNDLAFAYPNKLLC----VVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSI 500
G N+ + N + +V+ +D L+ +W L +++ +GH V S
Sbjct: 231 ------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 284
Query: 501 CPHHKENIQFIFSTAI--DGKIKAWLYD 526
H ENI I S A+ D IK W D
Sbjct: 285 ACHPTENI--IASAALENDKTIKLWKSD 310
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 834 VPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS--PPPASTFLAFHPQDNNIIAI 890
V + S N Y+++AT + L++ K + T+ F F I
Sbjct: 194 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 253
Query: 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGA--DAQLCVWSID 945
G+ED+ ++I+N++ E+ KL+GH + A + NI+ S+ D + +W D
Sbjct: 254 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 310
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 837 IALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895
+A S + + ++SA+ K + ++++ + K + T F+PQ N I++ G+ D
Sbjct: 70 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS-GSFDE 128
Query: 896 TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942
++ I++V+ + L H ++ + F+ +++VSS D +W
Sbjct: 129 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 175
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 907 VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGD 966
+K L GH K ++ + FS + L SS AD + +W + K+++ H G
Sbjct: 14 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH------KLGI 67
Query: 967 TRVQFNADQVRMLVVHETQ-LAIYDASKMERIRQVGSPHICSIIFCN 1012
+ V +++D ++ + + L I+D S + ++ + H + CN
Sbjct: 68 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCN 113
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 96/209 (45%), Gaps = 16/209 (7%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+VS V +SP+G ++ + LI+++ G+ D + I H ++D+A++ + LL
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +K+W++ SG+ L +GH Y C + I S + D ++ W D
Sbjct: 87 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW--D 141
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ P H + + ++ DGS + S +S DG W+ + G +T
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDG--LCRIWDTASGQCLKTLIDDD 197
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613
V+F + LA D+ +K WD
Sbjct: 198 NPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 26/246 (10%)
Query: 383 KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR 442
K KIW A F+ +I + +S VAWS D N + A ++++ + L+
Sbjct: 51 KLIKIW--GAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 107
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSIC 501
+ H V F + L +V+ D+ +++W++ +G+ L H PV ++
Sbjct: 108 ---TLKGHSNYVFCCNFNPQSNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV- 161
Query: 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSR-----VDYDAPGHWCTTMLYSADGSRLFSC 556
H + I S++ DG + W DT + +D D P + + +S +G + +
Sbjct: 162 -HFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAA 216
Query: 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVG-EDSQIKFWDM 614
D+ L W+ S+G +TY G + + + F T ++ G ED+ + W++
Sbjct: 217 TL----DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
Query: 615 DNVNIL 620
I+
Sbjct: 273 QTKEIV 278
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 8/144 (5%)
Query: 832 EAVPCIALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 890
+AV + S N ++ S++ K I ++ K T + +A+ D+N++
Sbjct: 30 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDSNLLVS 88
Query: 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKR 950
++D T+ I++V + LKGH + F+ N++VS D + +W + T +
Sbjct: 89 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 148
Query: 951 KSVTIHIPAGKTPTGDTRVQFNAD 974
K+ +PA P + V FN D
Sbjct: 149 KT----LPAHSDPV--SAVHFNRD 166
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 17/148 (11%)
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
+IWD A+ + I D P VS V +SP+G Y+ A + ++L+ Y+ L+ ++
Sbjct: 180 RIWDTASGQC-LKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 237
Query: 446 QIDAHVGAVNDLAFAYPNKLLC----VVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSI 500
G N+ + N + +V+ +D L+ +W L +++ +GH V S
Sbjct: 238 ------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 291
Query: 501 CPHHKENIQFIFSTAI--DGKIKAWLYD 526
H ENI I S A+ D IK W D
Sbjct: 292 ACHPTENI--IASAALENDKTIKLWKSD 317
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 834 VPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS--PPPASTFLAFHPQDNNIIAI 890
V + S N Y+++AT + L++ K + T+ F F I
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 260
Query: 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGA--DAQLCVWSID 945
G+ED+ ++I+N++ E+ KL+GH + A + NI+ S+ D + +W D
Sbjct: 261 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 837 IALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895
+A S + + ++SA+ K + ++++ + K + T F+PQ +N+I G+ D
Sbjct: 77 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDE 135
Query: 896 TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942
++ I++V+ + L H ++ + F+ +++VSS D +W
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 907 VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGD 966
+K L GH K ++ + FS + L SS AD + +W + K+++ H G
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH------KLGI 74
Query: 967 TRVQFNADQVRMLVVHETQ-LAIYDASKMERIRQVGSPHICSIIFCN 1012
+ V +++D ++ + + L I+D S + ++ + H + CN
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCN 120
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 108/254 (42%), Gaps = 16/254 (6%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+VS V +SP+G ++ + LI+++ G+ D + I H ++D+A++ + LL
Sbjct: 42 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 97
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +K+W++ SG+ L +GH Y C + I S + D ++ W D
Sbjct: 98 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW--D 152
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ P H + + ++ DGS + S +S DG W+ + G +T
Sbjct: 153 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDG--LCRIWDTASGQCLKTLIDDD 208
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
V+F + LA D+ +K WD L + FS G
Sbjct: 209 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 268
Query: 645 AVTTADNGFKILAN 658
V+ +++ + N
Sbjct: 269 IVSGSEDNLVYIWN 282
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 26/246 (10%)
Query: 383 KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR 442
K KIW A F+ +I + +S VAWS D N + A ++++ + L+
Sbjct: 62 KLIKIW--GAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 118
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSIC 501
+ H V F + L +V+ D+ +++W++ +G+ L H PV ++
Sbjct: 119 ---TLKGHSNYVFCCNFNPQSNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV- 172
Query: 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSR-----VDYDAPGHWCTTMLYSADGSRLFSC 556
H + I S++ DG + W DT + +D D P + + +S +G + +
Sbjct: 173 -HFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAA 227
Query: 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVG-EDSQIKFWDM 614
D+ L W+ S+G +TY G + + + F T ++ G ED+ + W++
Sbjct: 228 TL----DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 283
Query: 615 DNVNIL 620
I+
Sbjct: 284 QTKEIV 289
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 8/144 (5%)
Query: 832 EAVPCIALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 890
+AV + S N ++ S++ K I ++ K T + +A+ D+N++
Sbjct: 41 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDSNLLVS 99
Query: 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKR 950
++D T+ I++V + LKGH + F+ N++VS D + +W + T +
Sbjct: 100 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 159
Query: 951 KSVTIHIPAGKTPTGDTRVQFNAD 974
K+ +PA P + V FN D
Sbjct: 160 KT----LPAHSDPV--SAVHFNRD 177
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 17/148 (11%)
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
+IWD A+ + I D P VS V +SP+G Y+ A + ++L+ Y+ L+ ++
Sbjct: 191 RIWDTASGQC-LKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 248
Query: 446 QIDAHVGAVNDLAFAYPNKLLC----VVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSI 500
G N+ + N + +V+ +D L+ +W L +++ +GH V S
Sbjct: 249 ------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 302
Query: 501 CPHHKENIQFIFSTAI--DGKIKAWLYD 526
H ENI I S A+ D IK W D
Sbjct: 303 ACHPTENI--IASAALENDKTIKLWKSD 328
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 834 VPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS--PPPASTFLAFHPQDNNIIAI 890
V + S N Y+++AT + L++ K + T+ F F I
Sbjct: 212 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 271
Query: 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGA--DAQLCVWSID 945
G+ED+ ++I+N++ E+ KL+GH + A + NI+ S+ D + +W D
Sbjct: 272 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 328
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 837 IALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895
+A S + + ++SA+ K + ++++ + K + T F+PQ N I++ G+ D
Sbjct: 88 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS-GSFDE 146
Query: 896 TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942
++ I++V+ + L H ++ + F+ +++VSS D +W
Sbjct: 147 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 193
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 907 VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGD 966
+K L GH K ++ + FS + L SS AD + +W + K+++ H G
Sbjct: 32 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH------KLGI 85
Query: 967 TRVQFNADQVRMLVVHETQ-LAIYDASKMERIRQVGSPHICSIIFCN 1012
+ V +++D ++ + + L I+D S + ++ + H + CN
Sbjct: 86 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCN 131
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 109/254 (42%), Gaps = 16/254 (6%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+VS V +SP+G ++ + LI+++ G+ D + I H ++D+A++ + LL
Sbjct: 28 AVSSVKFSPNGEWLAASSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +K+W++ SG+ L +GH V+ C + I S + D ++ W D
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--D 138
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ P H + + ++ DGS + S +S DG W+ + G +T
Sbjct: 139 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDG--LCRIWDTASGQCLKTLIDDD 194
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
V+F + LA D+ +K WD L + FS G
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 254
Query: 645 AVTTADNGFKILAN 658
V+ +++ + N
Sbjct: 255 IVSGSEDNLVYIWN 268
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 26/246 (10%)
Query: 383 KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR 442
K KIW A F+ +I + +S VAWS D N + A ++++ + L+
Sbjct: 48 KLIKIW--GAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 104
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSIC 501
+ H V F + L +V+ D+ +++W++ +G+ L H PV ++
Sbjct: 105 ---TLKGHSNYVFCCNFNPQSNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV- 158
Query: 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSR-----VDYDAPGHWCTTMLYSADGSRLFSC 556
H + I S++ DG + W DT + +D D P + + +S +G + +
Sbjct: 159 -HFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAA 213
Query: 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVG-EDSQIKFWDM 614
D+ L W+ S+G +TY G + + + F T ++ G ED+ + W++
Sbjct: 214 TL----DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269
Query: 615 DNVNIL 620
I+
Sbjct: 270 QTKEIV 275
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 66/144 (45%), Gaps = 8/144 (5%)
Query: 832 EAVPCIALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 890
+AV + S N ++ +++ K I ++ K T + +A+ D+N++
Sbjct: 27 KAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDSNLLVS 85
Query: 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKR 950
++D T+ I++V + LKGH + F+ N++VS D + +W + T +
Sbjct: 86 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 145
Query: 951 KSVTIHIPAGKTPTGDTRVQFNAD 974
K+ +PA P + V FN D
Sbjct: 146 KT----LPAHSDPV--SAVHFNRD 163
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 17/148 (11%)
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
+IWD A+ + I D P VS V +SP+G Y+ A + ++L+ Y+ L+ ++
Sbjct: 177 RIWDTAS-GQCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 234
Query: 446 QIDAHVGAVNDLAFAYPNKLLC----VVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSI 500
G N+ + N + +V+ +D L+ +W L +++ +GH V S
Sbjct: 235 ------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 288
Query: 501 CPHHKENIQFIFSTAI--DGKIKAWLYD 526
H ENI I S A+ D IK W D
Sbjct: 289 ACHPTENI--IASAALENDKTIKLWKSD 314
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 834 VPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS--PPPASTFLAFHPQDNNIIAI 890
V + S N Y+++AT + L++ K + T+ F F I
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGA--DAQLCVWSID 945
G+ED+ ++I+N++ E+ KL+GH + A + NI+ S+ D + +W D
Sbjct: 258 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 837 IALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895
+A S + + ++SA+ K + ++++ + K + T F+PQ N I++ G+ D
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS-GSFDE 132
Query: 896 TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942
++ I++V+ + L H ++ + F+ +++VSS D +W
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 94/207 (45%), Gaps = 12/207 (5%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+VS V +SP+G ++ + LI+++ G+ D + I H ++D+A++ + LL
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +K+W++ SG+ L +GH Y C + I S + D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 527 TMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK 586
T A + + ++ DGS + S +S DG W+ + G +T
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDG--LCRIWDTASGQCLKTLIDDDNP 196
Query: 587 SNGVVQFDTTQNHFLAVGEDSQIKFWD 613
V+F + LA D+ +K WD
Sbjct: 197 PVSFVKFSPNGKYILAATLDNDLKLWD 223
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 105/246 (42%), Gaps = 26/246 (10%)
Query: 383 KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR 442
K KIW A F+ +I + +S VAWS D N + A ++++ + L+
Sbjct: 48 KLIKIW--GAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 104
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSIC 501
+ H V F + L +V+ D+ +++W++ +G L H PV ++
Sbjct: 105 ---TLKGHSNYVFCCNFNPQSNL--IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAV- 158
Query: 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSR-----VDYDAPGHWCTTMLYSADGSRLFSC 556
H + I S++ DG + W DT + +D D P + + +S +G + +
Sbjct: 159 -HFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAA 213
Query: 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVG-EDSQIKFWDM 614
D L W+ S+G +TY G + + + F T ++ G ED+ + W++
Sbjct: 214 TLDND----LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL 269
Query: 615 DNVNIL 620
I+
Sbjct: 270 QTKEIV 275
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 8/144 (5%)
Query: 832 EAVPCIALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 890
+AV + S N ++ S++ K I ++ K T + +A+ D+N++
Sbjct: 27 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDSNLLVS 85
Query: 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKR 950
++D T+ I++V + LKGH + F+ N++VS D + +W + T
Sbjct: 86 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCL 145
Query: 951 KSVTIHIPAGKTPTGDTRVQFNAD 974
K+ +PA P + V FN D
Sbjct: 146 KT----LPAHSDPV--SAVHFNRD 163
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 834 VPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS--PPPASTFLAFHPQDNNIIAI 890
V + S N Y+++AT + L++ K + T+ F F I
Sbjct: 198 VSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGA--DAQLCVWSID 945
G+ED+ ++I+N++ E+ KL+GH + A + NI+ S+ D + +W D
Sbjct: 258 GSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 17/148 (11%)
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
+IWD A+ + I D P VS V +SP+G Y+ A + ++L+ Y+ L+ ++
Sbjct: 177 RIWDTASGQC-LKTLIDDDNP-PVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYT 234
Query: 446 QIDAHVGAVNDLAFAYPNKLLC----VVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSI 500
G N+ + N + +V+ +D ++ +W L +++ +GH V S
Sbjct: 235 ------GHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVIST 288
Query: 501 CPHHKENIQFIFSTAI--DGKIKAWLYD 526
H ENI I S A+ D IK W D
Sbjct: 289 ACHPTENI--IASAALENDKTIKLWKSD 314
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Query: 837 IALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895
+A S + + ++SA+ K + ++++ + K + T F+PQ +N+I G+ D
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDE 132
Query: 896 TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942
++ I++V+ L H ++ + F+ +++VSS D +W
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 97/209 (46%), Gaps = 16/209 (7%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+VS V +SP+G ++ + LI+++ G+ D + I H ++D+A++ + LL
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +K+W++ SG+ L +GH V+ C + I S + D ++ W D
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--D 138
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ P H + + ++ DGS + S +S DG W+ + G +T
Sbjct: 139 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDG--LCRIWDTASGQCLKTLIDDD 194
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613
V+F + LA D+ +K WD
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 26/246 (10%)
Query: 383 KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR 442
K KIW A F+ +I + +S VAWS D N + A ++++ + L+
Sbjct: 48 KLIKIW--GAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 104
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSIC 501
+ H V F + L +V+ D+ +++W++ +G+ L H PV ++
Sbjct: 105 ---TLKGHSNYVFCCNFNPQSNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV- 158
Query: 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSR-----VDYDAPGHWCTTMLYSADGSRLFSC 556
H + I S++ DG + W DT + +D D P + + +S +G + +
Sbjct: 159 -HFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAA 213
Query: 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVG-EDSQIKFWDM 614
D+ L W+ S+G +TY G + + + F T ++ G ED+ + W++
Sbjct: 214 TL----DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269
Query: 615 DNVNIL 620
I+
Sbjct: 270 QTKEIV 275
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 8/144 (5%)
Query: 832 EAVPCIALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 890
+AV + S N ++ S++ K I ++ K T + +A+ D+N++
Sbjct: 27 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDSNLLVS 85
Query: 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKR 950
++D T+ I++V + LKGH + F+ N++VS D + +W + T +
Sbjct: 86 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 145
Query: 951 KSVTIHIPAGKTPTGDTRVQFNAD 974
K+ +PA P + V FN D
Sbjct: 146 KT----LPAHSDPV--SAVHFNRD 163
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 3/103 (2%)
Query: 834 VPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS--PPPASTFLAFHPQDNNIIAI 890
V + S N Y+++AT + L++ K + T+ F F I
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSS 933
G+ED+ ++I+N++ E+ KL+GH + A + NI+ S+
Sbjct: 258 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 15/137 (10%)
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
+IWD A+ + I D P VS V +SP+G Y+ A + ++L+ Y+ L+ ++
Sbjct: 177 RIWDTAS-GQCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 234
Query: 446 QIDAHVGAVNDLAFAYPNKLLC----VVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSI 500
G N+ + N + +V+ +D L+ +W L +++ +GH V S
Sbjct: 235 ------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 288
Query: 501 CPHHKENIQFIFSTAID 517
H ENI I S A++
Sbjct: 289 ACHPTENI--IASAALE 303
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 837 IALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895
+A S + + ++SA+ K + ++++ + K + T F+PQ N I++ G+ D
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS-GSFDE 132
Query: 896 TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942
++ I++V+ + L H ++ + F+ +++VSS D +W
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 907 VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGD 966
+K L GH K ++ + FS + L SS AD + +W + K+++ H G
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH------KLGI 71
Query: 967 TRVQFNADQVRMLVVHETQ-LAIYDASKMERIRQVGSPHICSIIFCN 1012
+ V +++D ++ + + L I+D S + ++ + H + CN
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCN 117
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 94/207 (45%), Gaps = 12/207 (5%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+VS V +SP+G ++ + LI+++ G+ D + I H ++D+A++ + LL
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +K+W++ SG+ L +GH Y C + I S + D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 527 TMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK 586
T A + + ++ DGS + S +S DG W+ + G +T
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDG--LCRIWDTASGQCLKTLIDDDNP 196
Query: 587 SNGVVQFDTTQNHFLAVGEDSQIKFWD 613
V+F + LA D+ +K WD
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 106/246 (43%), Gaps = 26/246 (10%)
Query: 383 KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR 442
K KIW A F+ +I + +S VAWS D N + A ++++ + L+
Sbjct: 48 KLIKIW--GAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 104
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSIC 501
+ H V F + L +V+ D+ +++W++ +G L H PV ++
Sbjct: 105 ---TLKGHSNYVFCCNFNPQSNL--IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAV- 158
Query: 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSR-----VDYDAPGHWCTTMLYSADGSRLFSC 556
H + I S++ DG + W DT + +D D P + + +S +G + +
Sbjct: 159 -HFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAA 213
Query: 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVG-EDSQIKFWDM 614
D+ L W+ S+G +TY G + + + F T ++ G ED+ + W++
Sbjct: 214 TL----DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL 269
Query: 615 DNVNIL 620
I+
Sbjct: 270 QTKEIV 275
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 8/144 (5%)
Query: 832 EAVPCIALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 890
+AV + S N ++ S++ K I ++ K T + +A+ D+N++
Sbjct: 27 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDSNLLVS 85
Query: 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKR 950
++D T+ I++V + LKGH + F+ N++VS D + +W + T
Sbjct: 86 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCL 145
Query: 951 KSVTIHIPAGKTPTGDTRVQFNAD 974
K+ +PA P + V FN D
Sbjct: 146 KT----LPAHSDPV--SAVHFNRD 163
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 17/148 (11%)
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
+IWD A+ + I D P VS V +SP+G Y+ A + ++L+ Y+ L+ ++
Sbjct: 177 RIWDTASGQC-LKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 234
Query: 446 QIDAHVGAVNDLAFAYPNKLLC----VVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSI 500
G N+ + N + +V+ +D ++ +W L +++ +GH V S
Sbjct: 235 ------GHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVIST 288
Query: 501 CPHHKENIQFIFSTAI--DGKIKAWLYD 526
H ENI I S A+ D IK W D
Sbjct: 289 ACHPTENI--IASAALENDKTIKLWKSD 314
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 834 VPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS--PPPASTFLAFHPQDNNIIAI 890
V + S N Y+++AT + L++ K + T+ F F I
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGA--DAQLCVWSID 945
G+ED+ ++I+N++ E+ KL+GH + A + NI+ S+ D + +W D
Sbjct: 258 GSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Query: 837 IALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895
+A S + + ++SA+ K + ++++ + K + T F+PQ N I++ G+ D
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS-GSFDE 132
Query: 896 TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942
++ I++V+ L H ++ + F+ +++VSS D +W
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 97/209 (46%), Gaps = 16/209 (7%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+VS V +SP+G ++ + LI+++ G+ D + I H ++D+A++ + LL
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +K+W++ SG+ L +GH V+ C + I S + D ++ W D
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--D 138
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ P H + + ++ DGS + S +S DG W+ + G +T
Sbjct: 139 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDG--LCRIWDTASGQCLKTLIDDD 194
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613
V+F + LA D+ +K WD
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 26/246 (10%)
Query: 383 KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR 442
K KIW A F+ +I + +S VAWS D N + A ++++ + L+
Sbjct: 48 KLIKIW--GAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 104
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSIC 501
+ H V F + L +V+ D+ +++W++ +G+ L H PV ++
Sbjct: 105 ---TLKGHSNYVFCCNFNPQSNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV- 158
Query: 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSR-----VDYDAPGHWCTTMLYSADGSRLFSC 556
H + I S++ DG + W DT + +D D P + + +S +G + +
Sbjct: 159 -HFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAA 213
Query: 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVG-EDSQIKFWDM 614
D+ L W+ S+G +TY G + + + F T ++ G ED+ + W++
Sbjct: 214 TL----DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269
Query: 615 DNVNIL 620
I+
Sbjct: 270 QTKEIV 275
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 8/144 (5%)
Query: 832 EAVPCIALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 890
+AV + S N ++ S++ K I ++ K T + +A+ D+N++
Sbjct: 27 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW-SSDSNLLVS 85
Query: 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKR 950
++D T+ I++V + LKGH + F+ N++VS D + +W + T +
Sbjct: 86 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 145
Query: 951 KSVTIHIPAGKTPTGDTRVQFNAD 974
K+ +PA P + V FN D
Sbjct: 146 KT----LPAHSDPV--SAVHFNRD 163
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 3/103 (2%)
Query: 834 VPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS--PPPASTFLAFHPQDNNIIAI 890
V + S N Y+++AT + L++ K + T+ F F I
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSS 933
G+ED+ ++I+N++ E+ KL+GH + A + NI+ S+
Sbjct: 258 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 15/137 (10%)
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
+IWD A+ + I D P VS V +SP+G Y+ A + ++L+ Y+ L+ ++
Sbjct: 177 RIWDTAS-GQCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 234
Query: 446 QIDAHVGAVNDLAFAYPNKLLC----VVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSI 500
G N+ + N + +V+ +D L+ +W L +++ +GH V S
Sbjct: 235 ------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 288
Query: 501 CPHHKENIQFIFSTAID 517
H ENI I S A++
Sbjct: 289 ACHPTENI--IASAALE 303
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 837 IALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895
+A S + + ++SA+ K + ++++ + K + T F+PQ +N+I G+ D
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDE 132
Query: 896 TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942
++ I++V+ + L H ++ + F+ +++VSS D +W
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 907 VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGD 966
+K L GH K ++ + FS + L SS AD + +W + K+++ H G
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH------KLGI 71
Query: 967 TRVQFNADQVRMLVVHETQ-LAIYDASKMERIRQVGSPHICSIIFCN 1012
+ V +++D ++ + + L I+D S + ++ + H + CN
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCN 117
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 90/191 (47%), Gaps = 9/191 (4%)
Query: 831 EEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNII- 888
E+ V C A S +D ++ + + K+ ++N MT +++ T+ F ++++
Sbjct: 663 EDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLL 722
Query: 889 AIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWE 948
A G+ D + ++++ E ++ + GH + FS +L S AD L +W +
Sbjct: 723 ATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSAN 782
Query: 949 KRKSVTIH--IPAGKTPTGDTRV-----QFNADQVRMLVVHETQLAIYDASKMERIRQVG 1001
+RKS+ + + P D V ++AD R++V + ++ ++D + ++
Sbjct: 783 ERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIH 842
Query: 1002 SPHICSIIFCN 1012
+ H +I +C+
Sbjct: 843 TGHHSTIQYCD 853
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 86/212 (40%), Gaps = 10/212 (4%)
Query: 450 HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENI 508
H AV F+ + + +CG DK ++V++ +G KL + HE V +C +
Sbjct: 620 HTDAVYHACFSEDGQR--IASCGADKTLQVFKAETGEKLLEIKAHEDEV--LCCAFSTDD 675
Query: 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSR-LFSCGTSKDGDSFLV 567
+FI + ++D K+K W T YD ++ L + G+S D FL
Sbjct: 676 RFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSS---DCFLK 732
Query: 568 EWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG 627
W+ ++ + T G N +F + D +K WD + N S + +
Sbjct: 733 LWDLNQKECRNTMFGHTNSVNH-CRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQ 791
Query: 628 GLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659
NL + E + + + +G +I+ A
Sbjct: 792 FFLNLEDPQEDMEVIVKCCSWSADGARIMVAA 823
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/154 (20%), Positives = 66/154 (42%), Gaps = 10/154 (6%)
Query: 829 NLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPAST-FLAFHPQDNNI 887
++E V C + S + + +M A KI LF++ T ++ + ++ + F PQ N++
Sbjct: 802 DMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQ-NHL 860
Query: 888 IAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTW 947
+ + ++N + +GH + G+ FS + ++S D + +W
Sbjct: 861 AVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKV 920
Query: 948 EKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV 981
K +V + + V F ++V +L V
Sbjct: 921 CKNSAVML--------KQEVDVVFQENEVMVLAV 946
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 34/78 (43%)
Query: 871 PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNIL 930
P + + A +D IA D T+ ++ E ++K H+ + AFST +
Sbjct: 619 PHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFI 678
Query: 931 VSSGADAQLCVWSIDTWE 948
+ D ++ +W+ T E
Sbjct: 679 ATCSVDKKVKIWNSMTGE 696
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 97/229 (42%), Gaps = 37/229 (16%)
Query: 448 DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSICPHHKE 506
D H VN F + L + T D +K+W+L+ ++ N GH V + C +
Sbjct: 702 DEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSV-NHCRFSPD 760
Query: 507 NIQFIFSTAIDGKIKAWLYDTMGSRV----------------DYDAPGHWCTTMLYSADG 550
+ + + S + DG +K W + R D + C+ +SADG
Sbjct: 761 D-KLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCS---WSADG 816
Query: 551 SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFD--TTQNHFLAVGEDSQ 608
+R+ +K FL + + S G + + G + +Q+ + QNH LAV SQ
Sbjct: 817 ARIMVAAKNK---IFLFDIHTS-GLLGEIHTG----HHSTIQYCDFSPQNH-LAVVALSQ 867
Query: 609 --IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
++ W+ D+ + + D G L + + FS +G+ ++ D ++
Sbjct: 868 YCVELWNTDSRSKV--ADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRL 914
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 888 IAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTW 947
IA G E+ I I + + + H+K + + F+ L+SS DA++ VW+ W
Sbjct: 982 IAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWN---W 1038
Query: 948 EKRKSV 953
+ K +
Sbjct: 1039 QLDKCI 1044
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 52/251 (20%), Positives = 91/251 (36%), Gaps = 37/251 (14%)
Query: 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCV 468
VS SP Y+ I++ + + Q H V + F K L
Sbjct: 970 VSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQ---HKKTVWHIQFTADEKTL-- 1024
Query: 469 VTCGDDKLIKVWELSGRKLFNFEGHEAPV--YSICPHHKENIQFIFSTAIDGKIKAWLYD 526
++ DD I+VW K GH+ V + + + + + S + DG +K W
Sbjct: 1025 ISSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSR-----LLSWSFDGTVKVWNII 1079
Query: 527 TMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGD----SFLVEWNESEGTIKRTYAG 582
T D+ + S D ++ S K L+ +E G
Sbjct: 1080 TGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRG-------- 1131
Query: 583 FRKKSNGVVQFD--TTQNHFLAVGEDS-QIKFWDMDN---VNILTSTDAEGGLPN---LP 633
NG V+ + + LA G+D+ +I+ W++ N +++ EG + +
Sbjct: 1132 ----HNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVT 1187
Query: 634 RLRFSKEGNLL 644
L FS +G +L
Sbjct: 1188 DLCFSPDGKML 1198
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 106/255 (41%), Gaps = 32/255 (12%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
SV+ VA+ PDG + A ++L++ G L Q + H +V +AF+ +
Sbjct: 264 SVNGVAFRPDGQTIASASDDKTVKLWNRNG--QLLQ--TLTGHSSSVWGVAFSPDGQ--T 317
Query: 468 VVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW---- 523
+ + DDK +K+W +G+ L GH + V+ + + Q I S + D +K W
Sbjct: 318 IASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVA--FSPDGQTIASASDDKTVKLWNRNG 375
Query: 524 -LYDTMGSRVDYDAPGHWCTT--MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580
L T+ GH + + +S DG + S D + WN G + +T
Sbjct: 376 QLLQTL--------TGHSSSVRGVAFSPDGQTIASASD----DKTVKLWNR-NGQLLQTL 422
Query: 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640
G GV F + +D +K W+ + + T T G ++ + FS +
Sbjct: 423 TGHSSSVWGVA-FSPDDQTIASASDDKTVKLWNRNGQLLQTLT---GHSSSVRGVAFSPD 478
Query: 641 GNLLAVTTADNGFKI 655
G +A + D K+
Sbjct: 479 GQTIASASDDKTVKL 493
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 105/255 (41%), Gaps = 32/255 (12%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
SV VA+SPDG + A ++L++ G L Q + H +V +AF+ +
Sbjct: 18 SVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQ--TLTGHSSSVWGVAFSPDGQ--T 71
Query: 468 VVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW---- 523
+ + DDK +K+W +G+ L GH + V + + Q I S + D +K W
Sbjct: 72 IASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVA--FSPDGQTIASASDDKTVKLWNRNG 129
Query: 524 -LYDTMGSRVDYDAPGHWCTT--MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580
L T+ GH + + +S DG + S D + WN G + +T
Sbjct: 130 QLLQTL--------TGHSSSVWGVAFSPDGQTIASASD----DKTVKLWNR-NGQLLQTL 176
Query: 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640
G GV F + +D +K W+ + + T T G ++ + FS +
Sbjct: 177 TGHSSSVWGVA-FSPDGQTIASASDDKTVKLWNRNGQLLQTLT---GHSSSVRGVAFSPD 232
Query: 641 GNLLAVTTADNGFKI 655
G +A + D K+
Sbjct: 233 GQTIASASDDKTVKL 247
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
SV VA+SPDG + A ++L++ G L Q + H +V +AF+ +
Sbjct: 469 SVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQ--TLTGHSSSVRGVAFSPDGQ--T 522
Query: 468 VVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW 523
+ + DDK +K+W +G+ L GH + V+ + + Q I S + D +K W
Sbjct: 523 IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVA--FSPDGQTIASASSDKTVKLW 576
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 105/255 (41%), Gaps = 32/255 (12%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
SV VA+SPDG + A ++L++ G L Q + H +V +AF+ +
Sbjct: 141 SVWGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQ--TLTGHSSSVWGVAFSPDGQ--T 194
Query: 468 VVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW---- 523
+ + DDK +K+W +G+ L GH + V + + Q I S + D +K W
Sbjct: 195 IASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVA--FSPDGQTIASASDDKTVKLWNRNG 252
Query: 524 -LYDTMGSRVDYDAPGHWCTT--MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580
L T+ GH + + + DG + S D + WN G + +T
Sbjct: 253 QLLQTL--------TGHSSSVNGVAFRPDGQTIASASD----DKTVKLWNR-NGQLLQTL 299
Query: 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640
G GV F + +D +K W+ + ++ T T G ++ + FS +
Sbjct: 300 TGHSSSVWGVA-FSPDGQTIASASDDKTVKLWNRNGQHLQTLT---GHSSSVWGVAFSPD 355
Query: 641 GNLLAVTTADNGFKI 655
G +A + D K+
Sbjct: 356 GQTIASASDDKTVKL 370
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 94/222 (42%), Gaps = 28/222 (12%)
Query: 441 LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSI 500
+++ ++++AH +V +AF+ + + + DDK +K+W +G+ L GH + V+ +
Sbjct: 6 VKERNRLEAHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGV 63
Query: 501 CPHHKENIQFIFSTAIDGKIKAW-----LYDTMGSRVDYDAPGHWCTT--MLYSADGSRL 553
+ Q I S + D +K W L T+ GH + + +S DG +
Sbjct: 64 A--FSPDGQTIASASDDKTVKLWNRNGQLLQTL--------TGHSSSVRGVAFSPDGQTI 113
Query: 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613
S D + WN G + +T G GV F + +D +K W+
Sbjct: 114 ASASD----DKTVKLWNR-NGQLLQTLTGHSSSVWGVA-FSPDGQTIASASDDKTVKLWN 167
Query: 614 MDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
+ + T T G ++ + FS +G +A + D K+
Sbjct: 168 RNGQLLQTLT---GHSSSVWGVAFSPDGQTIASASDDKTVKL 206
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 831 EEAVPCIALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA 889
+V +A S + + SA+ K + L+N +++ T + +AF P D IA
Sbjct: 467 SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIA 524
Query: 890 IGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942
++D T+ ++N R ++ L GH + G+AFS + S+ +D + +W
Sbjct: 525 SASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 831 EEAVPCIALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA 889
+V +A S + + SA+ K + L+N +++ T + +AF P D IA
Sbjct: 221 SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRP-DGQTIA 278
Query: 890 IGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942
++D T+ ++N R ++ L GH + G+AFS + S+ D + +W
Sbjct: 279 SASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 831 EEAVPCIALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA 889
+V +A S + + SA+ K + L+N +++ T + +AF P D+ IA
Sbjct: 385 SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQTIA 442
Query: 890 IGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942
++D T+ ++N R ++ L GH + G+AFS + S+ D + +W
Sbjct: 443 SASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 494
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 831 EEAVPCIALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA 889
+V +A S + + SA+ K + L+N +++ T + +AF P D IA
Sbjct: 16 SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DGQTIA 73
Query: 890 IGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942
++D T+ ++N R ++ L GH + G+AFS + S+ D + +W
Sbjct: 74 SASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 125
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 831 EEAVPCIALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA 889
+V +A S + + SA+ K + L+N +++ T + +AF P D IA
Sbjct: 57 SSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIA 114
Query: 890 IGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942
++D T+ ++N R ++ L GH + G+AFS + S+ D + +W
Sbjct: 115 SASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 166
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 831 EEAVPCIALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA 889
+V +A S + + SA+ K + L+N +++ T + +AF P D IA
Sbjct: 139 SSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DGQTIA 196
Query: 890 IGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942
++D T+ ++N R ++ L GH + G+AFS + S+ D + +W
Sbjct: 197 SASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 248
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 831 EEAVPCIALSKNDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA 889
+V +A S + + SA+ K + L+N + + T + +AF P D IA
Sbjct: 303 SSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQHLQTLTGHSSSVWGVAFSP-DGQTIA 360
Query: 890 IGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942
++D T+ ++N R ++ L GH + G+AFS + S+ D + +W
Sbjct: 361 SASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 412
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Query: 878 LAFHPQDNNIIAIGTEDSTIHIYNV-------RVDEVKSKLKGHQKRITGLAFS-TSLNI 929
+A+ P ++N+IA G+ED T+ ++ + + E L+GH KR+ +A+ T+ N+
Sbjct: 87 IAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNV 146
Query: 930 LVSSGADAQLCVWSIDT 946
L+S+G D + VW + T
Sbjct: 147 LLSAGXDNVILVWDVGT 163
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Query: 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638
T G K+ V T QN L+ G D+ I WD+ + + + + + +S
Sbjct: 126 TLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS 185
Query: 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALR 677
++G L+ + D +++ G ++ A ++ P E R
Sbjct: 186 RDGALICTSCRDKRVRVIEPRKG--TVVAEKDRPHEGTR 222
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Query: 878 LAFHPQDNNIIAIGTEDSTIHIYNV-------RVDEVKSKLKGHQKRITGLAFS-TSLNI 929
+A+ P ++N+IA G+ED T+ ++ + + E L+GH KR+ +A+ T+ N+
Sbjct: 87 IAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNV 146
Query: 930 LVSSGADAQLCVWSIDT 946
L+S+G D + VW + T
Sbjct: 147 LLSAGCDNVILVWDVGT 163
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 98/261 (37%), Gaps = 30/261 (11%)
Query: 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCV 468
V+RV + P + + A I+++ Y + R + H +V D++F + KLL
Sbjct: 111 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT---LKGHTDSVQDISFDHSGKLL-- 165
Query: 469 VTCGDDKLIKVWELSGRKLF-NFEGHEAPV--YSICPHHKENIQFIFSTAIDGKIKAWLY 525
+C D IK+W+ G + GH+ V SI P N I S + D IK W
Sbjct: 166 ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP----NGDHIVSASRDKTIKMWEV 221
Query: 526 DTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR------- 578
T + W + + DG+ + SC + ++V E + ++
Sbjct: 222 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC 281
Query: 579 -------TYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLP 630
+Y+ + + + FL G D IK WD+ L + G
Sbjct: 282 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL---VGHD 338
Query: 631 NLPRLRFSKEGNLLAVTTADN 651
N R G ++ AD+
Sbjct: 339 NWVRGVLFHSGGKFILSCADD 359
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 876 TFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGA 935
T + FHP +++ +ED+TI +++ + + LKGH + ++F S +L S A
Sbjct: 112 TRVIFHPV-FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA 170
Query: 936 DAQLCVWSIDTWEKRKSVTIH----IPAGKTPTGDTRVQFNADQ 975
D + +W +E +++ H P GD V + D+
Sbjct: 171 DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK 214
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 474 DKLIKVWELS-GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV 532
DK IK+W++S G L GH+ V + H +FI S A D ++ W Y
Sbjct: 317 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH--SGGKFILSCADDKTLRVWDYKNKRCMK 374
Query: 533 DYDAPGHWCTTM 544
+A H+ T++
Sbjct: 375 TLNAHEHFVTSL 386
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 468 VVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW 523
+++C DDK ++VW+ ++ HE V S+ H + ++ + ++D +K W
Sbjct: 353 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH--KTAPYVVTGSVDQTVKVW 407
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/178 (18%), Positives = 77/178 (43%), Gaps = 19/178 (10%)
Query: 765 SKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAND 824
S V R+++ +++ + K+W + + + K +V SG L+A+
Sbjct: 109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASC 168
Query: 825 VAGVNLE----EAVPCI-------------ALSKNDSYVMSATGGK-ISLFNMMTFKVMT 866
A + ++ + CI ++ N +++SA+ K I ++ + T +
Sbjct: 169 SADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK 228
Query: 867 TFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFS 924
TF + + QD +IA + D T+ ++ V E K++L+ H+ + ++++
Sbjct: 229 TFTGHREWVRMVRPN-QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWA 285
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 28/66 (42%)
Query: 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKR 950
G+ D TI +++V L GH + G+ F + ++S D L VW
Sbjct: 314 GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM 373
Query: 951 KSVTIH 956
K++ H
Sbjct: 374 KTLNAH 379
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 908 KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIH 956
K L GH+ +T + F +++VS+ DA + VW +T + +++ H
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGH 149
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 60/114 (52%), Gaps = 5/114 (4%)
Query: 837 IALSKNDSYVMSATGG-KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895
+ALS N ++ +SA+ + L+N+ + F+ +AF P DN I G D+
Sbjct: 73 VALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSP-DNRQIVSGGRDN 131
Query: 896 TIHIYNVRVDEVKSKLKG-HQKRITGLAFSTSLN--ILVSSGADAQLCVWSIDT 946
+ ++NV+ + + + +G H ++ + FS SL+ ++VS G D + VW + T
Sbjct: 132 ALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLAT 185
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 8/126 (6%)
Query: 880 FHPQ-DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQ 938
F P D +I G D+ + ++++ + + LKGH +T + S ++ SS D
Sbjct: 160 FSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGV 219
Query: 939 LCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIR 998
+W + E + P ++ F+ ++ M E + I+D + I
Sbjct: 220 ARLWDLTKGEALSEMAAGAPI-------NQICFSPNRYWMCAATEKGIRIFDLENKDIIV 272
Query: 999 QVGSPH 1004
++ H
Sbjct: 273 ELAPEH 278
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 385 FKIWDM--AACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR 442
++W++ C F KDV VA+SPD + + +++++ G +
Sbjct: 91 LRLWNLQNGQCQYKFLGHT-KDVL----SVAFSPDNRQIVSGGRDNALRVWNVKG--ECM 143
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSI 500
AH V+ + F+ +V+ G D L+KVW+L +GR + + +GH V S+
Sbjct: 144 HTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSV 202
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/239 (21%), Positives = 94/239 (39%), Gaps = 33/239 (13%)
Query: 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478
NYV +I++Y L Q + H G V L +A+ L V+ D+ ++
Sbjct: 133 NYVITGADDKMIRVYDSINKKFLLQ---LSGHDGGVWALKYAHGGIL---VSGSTDRTVR 186
Query: 479 VWELS-GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD---- 533
VW++ G FEGH + V + +NI++I + + D + W S D
Sbjct: 187 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE 246
Query: 534 YDAP-----------------GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576
+D P GH + S G+ + S D+ L+ W+ ++
Sbjct: 247 HDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY----DNTLIVWDVAQMKC 302
Query: 577 KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635
+G + + +D + ++ D+ I+ WD++N ++ + L L RL
Sbjct: 303 LYILSGHTDRIYSTI-YDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL 360
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 469 VTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527
++ D I++W+L +G ++ +GH A V + + + +F+ S A DG I+ W +
Sbjct: 326 ISASMDTTIRIWDLENGELMYTLQGHTALVGLL----RLSDKFLVSAAADGSIRGWDAND 381
Query: 528 MGSRVDYDAPGHWCTTMLYSAD 549
+ Y T Y +D
Sbjct: 382 YSRKFSYHHTNLSAITTFYVSD 403
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 884 DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 943
++N + G +D I +Y+ + +L GH + L ++ ILVS D + VW
Sbjct: 131 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD 189
Query: 944 IDTWEKRKSVTIHIPAGKTPT 964
I +K H+ G T
Sbjct: 190 I-----KKGCCTHVFEGHNST 205
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 30/63 (47%)
Query: 886 NIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSID 945
NI+ G+ D+T+ +++V + L GH RI + +S+ D + +W ++
Sbjct: 281 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE 340
Query: 946 TWE 948
E
Sbjct: 341 NGE 343
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 76/172 (44%), Gaps = 13/172 (7%)
Query: 786 GVQKLWKWHRNEQNPSGKATASA--VPQHWLPSSG--LLMANDVAGVNLEEAVPCI-ALS 840
GVQ + WH E +P AT + V + S G L+ + V E C
Sbjct: 23 GVQ--FNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYD 80
Query: 841 KNDSYVMSATGGK---ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTI 897
N S+ + A G I + N +T + + ++ A L FHP+D N++ ++D +
Sbjct: 81 SNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHAL 140
Query: 898 HIYNVRVD---EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT 946
++N++ D + ++GH+ + + ++S G D L +W I++
Sbjct: 141 RLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 192
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 76/172 (44%), Gaps = 13/172 (7%)
Query: 786 GVQKLWKWHRNEQNPSGKATASA--VPQHWLPSSG--LLMANDVAGVNLEEAVPCI-ALS 840
GVQ + WH E +P AT + V + S G L+ + V E C
Sbjct: 59 GVQ--FNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYD 116
Query: 841 KNDSYVMSATGGK---ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTI 897
N S+ + A G I + N +T + + ++ A L FHP+D N++ ++D +
Sbjct: 117 SNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHAL 176
Query: 898 HIYNVRVD---EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT 946
++N++ D + ++GH+ + + ++S G D L +W I++
Sbjct: 177 RLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 228
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 76/172 (44%), Gaps = 13/172 (7%)
Query: 786 GVQKLWKWHRNEQNPSGKATASA--VPQHWLPSSG--LLMANDVAGVNLEEAVPCI-ALS 840
GVQ + WH E +P AT + V + S G L+ + V E C
Sbjct: 18 GVQ--FNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYD 75
Query: 841 KNDSYVMSATGGK---ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTI 897
N S+ + A G I + N +T + + ++ A L FHP+D N++ ++D +
Sbjct: 76 SNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHAL 135
Query: 898 HIYNVRVD---EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT 946
++N++ D + ++GH+ + + ++S G D L +W I++
Sbjct: 136 RLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 187
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 76/172 (44%), Gaps = 13/172 (7%)
Query: 786 GVQKLWKWHRNEQNPSGKATASA--VPQHWLPSSG--LLMANDVAGVNLEEAVPCI-ALS 840
GVQ + WH E +P AT + V + S G L+ + V E C
Sbjct: 22 GVQ--FNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYD 79
Query: 841 KNDSYVMSATGGK---ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTI 897
N S+ + A G I + N +T + + ++ A L FHP+D N++ ++D +
Sbjct: 80 SNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHAL 139
Query: 898 HIYNVRVD---EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT 946
++N++ D + ++GH+ + + ++S G D L +W I++
Sbjct: 140 RLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 191
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 76/172 (44%), Gaps = 13/172 (7%)
Query: 786 GVQKLWKWHRNEQNPSGKATASA--VPQHWLPSSG--LLMANDVAGVNLEEAVPCI-ALS 840
GVQ + WH E +P AT + V + S G L+ + V E C
Sbjct: 22 GVQ--FNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYD 79
Query: 841 KNDSYVMSATGGK---ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTI 897
N S+ + A G I + N +T + + ++ A L FHP+D N++ ++D +
Sbjct: 80 SNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHAL 139
Query: 898 HIYNVRVD---EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT 946
++N++ D + ++GH+ + + ++S G D L +W I++
Sbjct: 140 RLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 191
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 84/212 (39%), Gaps = 30/212 (14%)
Query: 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELS-GRKLFNFEGHEAPVYSICPHH 504
Q+ H G V L +A+ L V+ D+ ++VW++ G FEGH + V +
Sbjct: 157 QLSGHDGGVWALKYAHGGIL---VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVE 213
Query: 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVD----YDAP-----------------GHWCTT 543
+NI++I + + D + W S D +D P GH +
Sbjct: 214 YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASV 273
Query: 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV 603
S G+ + S D+ L+ W+ ++ +G + + +D + ++
Sbjct: 274 RTVSGHGNIVVSGSY----DNTLIVWDVAQXKCLYILSGHTDRIYSTI-YDHERKRCISA 328
Query: 604 GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635
D+ I+ WD++N + + L L RL
Sbjct: 329 SXDTTIRIWDLENGELXYTLQGHTALVGLLRL 360
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 469 VTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527
++ D I++W+L +G + +GH A V + + + +F+ S A DG I+ W +
Sbjct: 326 ISASXDTTIRIWDLENGELXYTLQGHTALVGLL----RLSDKFLVSAAADGSIRGWDAND 381
Query: 528 MGSRVDYDAPGHWCTTMLYSAD 549
+ Y T Y +D
Sbjct: 382 YSRKFSYHHTNLSAITTFYVSD 403
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 7/98 (7%)
Query: 867 TFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTS 926
T + S +DN +I G +D I +Y+ + +L GH + L ++
Sbjct: 115 TTLRGHXTSVITCLQFEDNYVIT-GADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHG 173
Query: 927 LNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPT 964
ILVS D + VW I +K H+ G T
Sbjct: 174 -GILVSGSTDRTVRVWDI-----KKGCCTHVFEGHNST 205
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 33/71 (46%)
Query: 886 NIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSID 945
NI+ G+ D+T+ +++V + L GH RI + +S+ D + +W ++
Sbjct: 281 NIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLE 340
Query: 946 TWEKRKSVTIH 956
E ++ H
Sbjct: 341 NGELXYTLQGH 351
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 91/234 (38%), Gaps = 30/234 (12%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI 401
H G V S+ LLL S + + W+L D+ P + S + I
Sbjct: 16 HNG-WVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVR-------SFKGHSHI 67
Query: 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY 461
+D ++ DG Y A ++L+ A ++ VG +D+
Sbjct: 68 VQDCTLT-------ADGAYALSASWDKTLRLWDVATGETYQRF------VGHKSDVMSVD 114
Query: 462 PNKLLCVVTCGD-DKLIKVWELSGRKLFNFEGHEAPV--YSICPHHK--ENIQFIFSTAI 516
+K ++ G DK IKVW + G+ L GH V + P+ K ++ I S
Sbjct: 115 IDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN 174
Query: 517 DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570
D +KAW + D+ T+ S DG+ + S G KDG+ L WN
Sbjct: 175 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG--KDGEIML--WN 224
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 887 IIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSI 944
II+ G D + +N+ ++++ GH I L S ++ S+G D ++ +W++
Sbjct: 169 IISAG-NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 91/234 (38%), Gaps = 30/234 (12%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI 401
H G V S+ LLL S + + W+L D+ P + S + I
Sbjct: 16 HNG-WVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVR-------SFKGHSHI 67
Query: 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY 461
+D ++ DG Y A ++L+ A ++ VG +D+
Sbjct: 68 VQDCTLT-------ADGAYALSASWDKTLRLWDVATGETYQRF------VGHKSDVMSVD 114
Query: 462 PNKLLCVVTCGD-DKLIKVWELSGRKLFNFEGHEAPV--YSICPHHK--ENIQFIFSTAI 516
+K ++ G DK IKVW + G+ L GH V + P+ K ++ I S
Sbjct: 115 IDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN 174
Query: 517 DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570
D +KAW + D+ T+ S DG+ + S G KDG+ L WN
Sbjct: 175 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG--KDGEIML--WN 224
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 887 IIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSI 944
II+ G D + +N+ ++++ GH I L S ++ S+G D ++ +W++
Sbjct: 169 IISAG-NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 91/234 (38%), Gaps = 30/234 (12%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI 401
H G V S+ LLL S + + W+L D+ P + S + I
Sbjct: 16 HNG-WVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVR-------SFKGHSHI 67
Query: 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY 461
+D ++ DG Y A ++L+ A ++ VG +D+
Sbjct: 68 VQDCTLT-------ADGAYALSASWDKTLRLWDVATGETYQRF------VGHKSDVMSVD 114
Query: 462 PNKLLCVVTCGD-DKLIKVWELSGRKLFNFEGHEAPV--YSICPHHK--ENIQFIFSTAI 516
+K ++ G DK IKVW + G+ L GH V + P+ K ++ I S
Sbjct: 115 IDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN 174
Query: 517 DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570
D +KAW + D+ T+ S DG+ + S G KDG+ L WN
Sbjct: 175 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG--KDGEIML--WN 224
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 887 IIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSI 944
II+ G D + +N+ ++++ GH I L S ++ S+G D ++ +W++
Sbjct: 169 IISAG-NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 91/234 (38%), Gaps = 30/234 (12%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI 401
H G V S+ LLL S + + W+L D+ P + S + I
Sbjct: 16 HNG-WVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVR-------SFKGHSHI 67
Query: 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY 461
+D ++ DG Y A ++L+ A ++ VG +D+
Sbjct: 68 VQDCTLT-------ADGAYALSASWDKTLRLWDVATGETYQRF------VGHKSDVMSVD 114
Query: 462 PNKLLCVVTCGD-DKLIKVWELSGRKLFNFEGHEAPV--YSICPHHK--ENIQFIFSTAI 516
+K ++ G DK IKVW + G+ L GH V + P+ K ++ I S
Sbjct: 115 IDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN 174
Query: 517 DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570
D +KAW + D+ T+ S DG+ + S G KDG+ L WN
Sbjct: 175 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG--KDGEIML--WN 224
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 887 IIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSI 944
II+ G D + +N+ ++++ GH I L S ++ S+G D ++ +W++
Sbjct: 169 IISAG-NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 91/234 (38%), Gaps = 30/234 (12%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI 401
H G V S+ LLL S + + W+L D+ P + S + I
Sbjct: 10 HNG-WVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVR-------SFKGHSHI 61
Query: 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY 461
+D ++ DG Y A ++L+ A ++ VG +D+
Sbjct: 62 VQDCTLT-------ADGAYALSASWDKTLRLWDVATGETYQRF------VGHKSDVMSVD 108
Query: 462 PNKLLCVVTCGD-DKLIKVWELSGRKLFNFEGHEAPV--YSICPHHK--ENIQFIFSTAI 516
+K ++ G DK IKVW + G+ L GH V + P+ K ++ I S
Sbjct: 109 IDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN 168
Query: 517 DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570
D +KAW + D+ T+ S DG+ + S G KDG+ L WN
Sbjct: 169 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG--KDGEIML--WN 218
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 887 IIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSI 944
II+ G D + +N+ ++++ GH I L S ++ S+G D ++ +W++
Sbjct: 163 IISAG-NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 219
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 23/188 (12%)
Query: 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISV 409
+ ++P+ LL S + I LW+++ V K K+ D +IF V
Sbjct: 183 LSWNPNLSGHLLSASDDHTICLWDISA----VPKEGKVVDAK--------TIFTGHTAVV 230
Query: 410 SRVAWS--PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
V+W + + VA + L+ ++ +N + +DAH VN L+F P
Sbjct: 231 EDVSWHLLHESLFGSVADDQKLM-IWDTRSNNTSKPSHSVDAHTAEVNCLSFN-PYSEFI 288
Query: 468 VVTCGDDKLIKVWELSG--RKLFNFEGHEAPVYSI--CPHHKENIQFIFSTAIDGKIKAW 523
+ T DK + +W+L KL +FE H+ ++ + PH N + S+ D ++ W
Sbjct: 289 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLNVW 345
Query: 524 LYDTMGSR 531
+G
Sbjct: 346 DLSKIGEE 353
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 878 LAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK-SKLKGHQKRITGLAFS-TSLNILVSSGA 935
L+F+P I+A G+ D T+ ++++R ++K + H+ I + +S + IL SSG
Sbjct: 279 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 338
Query: 936 DAQLCVWSI 944
D +L VW +
Sbjct: 339 DRRLNVWDL 347
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 17/116 (14%)
Query: 880 FHPQDNNIIAIGTEDSTIHIYNVRVDEVKS----------KLKGHQKRITGLAFSTSLN- 928
+ PQ+ IIA T S + +++ K +L+GHQK GL+++ +L+
Sbjct: 132 YMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSG 191
Query: 929 ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHET 984
L+S+ D +C+W I K V + A TG T V + V ++HE+
Sbjct: 192 HLLSASDDHTICLWDISAVPKEGKV---VDAKTIFTGHTAV---VEDVSWHLLHES 241
Score = 29.6 bits (65), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 32/166 (19%), Positives = 68/166 (40%), Gaps = 34/166 (20%)
Query: 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404
+ V + F+P + +L GS++ + LW+L +L + F+
Sbjct: 274 AEVNCLSFNPYSEFILATGSADKTVALWDLR------------------NLKLKLHSFES 315
Query: 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDA-------------HV 451
+ +V WSP + +A + +L + S + S DA H
Sbjct: 316 HKDEIFQVQWSPHNETI-LASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHT 374
Query: 452 GAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPV 497
++D ++ PN+ + + +D +++VW+++ ++N E E V
Sbjct: 375 AKISDFSWN-PNEPWVICSVSEDNIMQVWQMA-ENIYNDEDPEGSV 418
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 90/233 (38%), Gaps = 28/233 (12%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI 401
H G V S+ LLL S + + W+L D+ P + S + I
Sbjct: 16 HNG-WVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVR-------SFKGHSHI 67
Query: 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY 461
+D ++ DG Y A ++L+ A ++ + V +V+
Sbjct: 68 VQDCTLT-------ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVD-----I 115
Query: 462 PNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPV--YSICPHHK--ENIQFIFSTAID 517
K +++ DK IKVW + G+ L GH V + P+ K ++ I S D
Sbjct: 116 DKKASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 518 GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570
+KAW + D+ T+ S DG+ + S G KDG+ L WN
Sbjct: 176 KXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG--KDGEIXL--WN 224
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 887 IIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSI 944
II+ G D + +N+ ++++ GH I L S ++ S+G D ++ +W++
Sbjct: 169 IISAG-NDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNL 225
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/239 (19%), Positives = 95/239 (39%), Gaps = 46/239 (19%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI 401
+ S+V ++ F+ +L G +NGEI IWDM C+ S
Sbjct: 111 NHSSSVKTVKFNAKQDNVLASGGNNGEIF----------------IWDMNKCT----ESP 150
Query: 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY 461
P++ + S D + +A+ + L +++ AGS++ + A ++ L++
Sbjct: 151 SNYTPLTPGQSMSSVD-EVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIH-LSYTS 208
Query: 462 PN------------------KLLCVVTCGDDKLIKVWELSGR----KLFNFEGHEAPVYS 499
PN ++ +D I +W+L + N +GH+ + S
Sbjct: 209 PNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLN-QGHQKGILS 267
Query: 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558
+ H++ + S+ D + W ++ + A G+WC ++ + LF+C +
Sbjct: 268 LDWCHQDE-HLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACAS 325
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 448 DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR--KLFN-FEGHEAPVYSICPHH 504
+AH ++D Y K L TC DK IK++E+ G KL + GHE PV+ + H
Sbjct: 6 NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 505 KENIQFIFSTAIDGKIKAW 523
+ + S + DGK+ W
Sbjct: 64 PKFGTILASCSYDGKVLIW 82
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 448 DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR--KLFN-FEGHEAPVYSICPHH 504
+AH ++D Y K L TC DK IK++E+ G KL + GHE PV+ + H
Sbjct: 8 NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 65
Query: 505 KENIQFIFSTAIDGKIKAW 523
+ + S + DGK+ W
Sbjct: 66 PKFGTILASCSYDGKVLIW 84
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 23/188 (12%)
Query: 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISV 409
+ ++P+ LL S + I LW++ K ++ D +IF V
Sbjct: 189 LSWNPNLNGYLLSASDDHTICLWDI----NATPKEHRVIDAK--------NIFTGHTAVV 236
Query: 410 SRVAWS--PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
VAW + + VA + L+ ++ +N + +DAH VN L+F P
Sbjct: 237 EDVAWHLLHESLFGSVADDQKLM-IWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFI 294
Query: 468 VVTCGDDKLIKVWELSG--RKLFNFEGHEAPVYSI--CPHHKENIQFIFSTAIDGKIKAW 523
+ T DK + +W+L KL +FE H+ ++ + PH N + S+ D ++ W
Sbjct: 295 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVW 351
Query: 524 LYDTMGSR 531
+G
Sbjct: 352 DLSKIGEE 359
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 17/116 (14%)
Query: 880 FHPQDNNIIAIGTEDSTIHIYNVRVDEVKS----------KLKGHQKRITGLAFSTSLN- 928
+ PQ+ +IA T S + +++ K +L+GHQK GL+++ +LN
Sbjct: 138 YMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG 197
Query: 929 ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHET 984
L+S+ D +C+W I+ K V I A TG T V + V ++HE+
Sbjct: 198 YLLSASDDHTICLWDINATPKEHRV---IDAKNIFTGHTAV---VEDVAWHLLHES 247
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 878 LAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK-SKLKGHQKRITGLAFS-TSLNILVSSGA 935
L+F+P I+A G+ D T+ ++++R ++K + H+ I + +S + IL SSG
Sbjct: 285 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 344
Query: 936 DAQLCVWSI 944
D +L VW +
Sbjct: 345 DRRLHVWDL 353
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/166 (19%), Positives = 69/166 (41%), Gaps = 34/166 (20%)
Query: 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404
+ V + F+P + +L GS++ + LW+L +L + F+
Sbjct: 280 AEVNCLSFNPYSEFILATGSADKTVALWDLR------------------NLKLKLHSFES 321
Query: 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDA-------------HV 451
+ +V WSP + +A + +L+ + S + S DA H
Sbjct: 322 HKDEIFQVQWSPHNETI-LASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT 380
Query: 452 GAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPV 497
++D ++ PN+ + + +D +++VW+++ ++N E E P
Sbjct: 381 AKISDFSWN-PNEPWIICSVSEDNIMQVWQMA-ENVYNDEEPEIPA 424
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 448 DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR--KLFN-FEGHEAPVYSICPHH 504
+AH ++D Y K L TC DK IK++E+ G KL + GHE PV+ + H
Sbjct: 6 NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 505 KENIQFIFSTAIDGKIKAW 523
+ + S + DGK+ W
Sbjct: 64 PKFGTILASCSYDGKVLIW 82
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 23/188 (12%)
Query: 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISV 409
+ ++P+ LL S + I LW++ K ++ D +IF V
Sbjct: 187 LSWNPNLNGYLLSASDDHTICLWDI----NATPKEHRVIDAK--------NIFTGHTAVV 234
Query: 410 SRVAWS--PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
VAW + + VA + L+ ++ +N + +DAH VN L+F P
Sbjct: 235 EDVAWHLLHESLFGSVADDQKLM-IWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFI 292
Query: 468 VVTCGDDKLIKVWELSG--RKLFNFEGHEAPVYSI--CPHHKENIQFIFSTAIDGKIKAW 523
+ T DK + +W+L KL +FE H+ ++ + PH N + S+ D ++ W
Sbjct: 293 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVW 349
Query: 524 LYDTMGSR 531
+G
Sbjct: 350 DLSKIGEE 357
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 17/116 (14%)
Query: 880 FHPQDNNIIAIGTEDSTIHIYNVRVDEVKS----------KLKGHQKRITGLAFSTSLN- 928
+ PQ+ +IA T S + +++ K +L+GHQK GL+++ +LN
Sbjct: 136 YMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG 195
Query: 929 ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHET 984
L+S+ D +C+W I+ K V I A TG T V + V ++HE+
Sbjct: 196 YLLSASDDHTICLWDINATPKEHRV---IDAKNIFTGHTAV---VEDVAWHLLHES 245
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 878 LAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK-SKLKGHQKRITGLAFS-TSLNILVSSGA 935
L+F+P I+A G+ D T+ ++++R ++K + H+ I + +S + IL SSG
Sbjct: 283 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 342
Query: 936 DAQLCVWSI 944
D +L VW +
Sbjct: 343 DRRLHVWDL 351
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/166 (19%), Positives = 69/166 (41%), Gaps = 34/166 (20%)
Query: 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404
+ V + F+P + +L GS++ + LW+L +L + F+
Sbjct: 278 AEVNCLSFNPYSEFILATGSADKTVALWDLR------------------NLKLKLHSFES 319
Query: 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDA-------------HV 451
+ +V WSP + +A + +L+ + S + S DA H
Sbjct: 320 HKDEIFQVQWSPHNETI-LASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT 378
Query: 452 GAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPV 497
++D ++ PN+ + + +D +++VW+++ ++N E E P
Sbjct: 379 AKISDFSWN-PNEPWIICSVSEDNIMQVWQMA-ENVYNDEEPEIPA 422
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 448 DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR--KLFN-FEGHEAPVYSICPHH 504
+AH ++D Y K + TC DK IK++E+ G KL + GHE PV+ + H
Sbjct: 6 NAHNEMIHDAVMDYYGKRMA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 505 KENIQFIFSTAIDGKIKAW 523
+ + S + DGK+ W
Sbjct: 64 PKFGTILASCSYDGKVMIW 82
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 23/188 (12%)
Query: 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISV 409
+ ++P+ LL S + I LW++ K ++ D +IF V
Sbjct: 191 LSWNPNLNGYLLSASDDHTICLWDI----NATPKEHRVIDAK--------NIFTGHTAVV 238
Query: 410 SRVAWS--PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
VAW + + VA + L+ ++ +N + +DAH VN L+F P
Sbjct: 239 EDVAWHLLHESLFGSVADDQKLM-IWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFI 296
Query: 468 VVTCGDDKLIKVWELSG--RKLFNFEGHEAPVYSI--CPHHKENIQFIFSTAIDGKIKAW 523
+ T DK + +W+L KL +FE H+ ++ + PH N + S+ D ++ W
Sbjct: 297 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVW 353
Query: 524 LYDTMGSR 531
+G
Sbjct: 354 DLSKIGEE 361
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 17/116 (14%)
Query: 880 FHPQDNNIIAIGTEDSTIHIYNVRVDEVKS----------KLKGHQKRITGLAFSTSLN- 928
+ PQ+ +IA T S + +++ K +L+GHQK GL+++ +LN
Sbjct: 140 YMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG 199
Query: 929 ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHET 984
L+S+ D +C+W I+ K V I A TG T V + V ++HE+
Sbjct: 200 YLLSASDDHTICLWDINATPKEHRV---IDAKNIFTGHTAV---VEDVAWHLLHES 249
Score = 37.4 bits (85), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 878 LAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK-SKLKGHQKRITGLAFS-TSLNILVSSGA 935
L+F+P I+A G+ D T+ ++++R ++K + H+ I + +S + IL SSG
Sbjct: 287 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 346
Query: 936 DAQLCVWSI 944
D +L VW +
Sbjct: 347 DRRLHVWDL 355
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 13/120 (10%)
Query: 837 IALSKNDSYVMSA-TGGKISLFNMMTFKVMTT----------FMSPPPASTFLAFHPQDN 885
I++S +++Y+ + GKI L+++ + +V T+ +S PA +
Sbjct: 494 ISISPSETYIAAGDVXGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEE 553
Query: 886 NIIAIGTEDSTIHIYNV-RVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSI 944
+++A G+ D+ I IY+V R ++ L H+ + L + T + LVSSGADA + W++
Sbjct: 554 DLVATGSLDTNIFIYSVKRPXKIIKALNAHKDGVNNLLWETP-STLVSSGADACIKRWNV 612
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 894 DSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942
D T++ Y + DEV + GH K IT L ++N L+S D ++ W
Sbjct: 318 DGTLNFYELGHDEVLKTISGHNKGITAL----TVNPLISGSYDGRIXEW 362
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 16/159 (10%)
Query: 353 HPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412
HP + L + G TL DR + +IW S ++ + + +V +V
Sbjct: 14 HPDSRCWFLAWNPAG--TLLASCGGDRRI----RIWGTEGDSWICKSVLSEGHQRTVRKV 67
Query: 413 AWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG 472
AWSP GNY+ A ++ +D + ++ H V +A+A LL TC
Sbjct: 68 AWSPCGNYLASASFDATTCIWK-KNQDDFECVTTLEGHENEVKSVAWAPSGNLL--ATCS 124
Query: 473 DDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFI 511
DK + VWE+ E E S+ H ++++ +
Sbjct: 125 RDKSVWVWEVD-------EEDEYECVSVLNSHTQDVKHV 156
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 11/77 (14%)
Query: 868 FMSPPPASTFLAFHPQDNNIIAIGTE-DSTIHIYNVRVDEVKSKL-KGHQKRITGLAFST 925
F++ PA T LA D I GTE DS I KS L +GHQ+ + +A+S
Sbjct: 21 FLAWNPAGTLLASCGGDRRIRIWGTEGDSWI---------CKSVLSEGHQRTVRKVAWSP 71
Query: 926 SLNILVSSGADAQLCVW 942
N L S+ DA C+W
Sbjct: 72 CGNYLASASFDATTCIW 88
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 885 NNIIAIGTEDSTIHIYNVRVD--EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942
N +A + D+T I+ D E + L+GH+ + +A++ S N+L + D + VW
Sbjct: 73 GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVW 132
Query: 943 SIDTWEKRKSVTI 955
+D ++ + V++
Sbjct: 133 EVDEEDEYECVSV 145
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 25/132 (18%)
Query: 813 WLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPP 872
W PS LL A + +++V + + D Y +S+ N T V
Sbjct: 113 WAPSGNLL-----ATCSRDKSVWVWEVDEEDEYEC------VSVLNSHTQDVK------- 154
Query: 873 PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE--VKSKLKGHQKRITGLAFSTSLNIL 930
+ +HP ++A + D T+ +Y D+ + L+GH+ + LAF S L
Sbjct: 155 ----HVVWHPS-QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRL 209
Query: 931 VSSGADAQLCVW 942
S D + +W
Sbjct: 210 ASCSDDRTVRIW 221
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 16/122 (13%)
Query: 541 CTTMLYSADGSRLFSCGTSK-------DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQF 593
C + ++ G+ L SCG + +GDS++ + SEG +RT RK V +
Sbjct: 19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGH-QRT---VRK-----VAW 69
Query: 594 DTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653
N+ + D+ W + + T EG + + ++ GNLLA + D
Sbjct: 70 SPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSV 129
Query: 654 KI 655
+
Sbjct: 130 WV 131
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 67/139 (48%), Gaps = 30/139 (21%)
Query: 439 NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELS-GRKLFNFEGHEAPV 497
++ + S + H G V+ +A + P+ LC + G D ++ +W+L+ G+KL++ E + +
Sbjct: 549 SNCKLRSTLAGHTGYVSTVAVS-PDGSLCA-SGGKDGVVLLWDLAEGKKLYSLEANSV-I 605
Query: 498 YSIC--PHHKENIQFIFSTAIDGKIKAWLYDTM-------------GSRVDYDAPGH--- 539
+++C P+ ++ A + IK W ++ + D P
Sbjct: 606 HALCFSPN-----RYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKR 660
Query: 540 ---WCTTMLYSADGSRLFS 555
+CT++ +SADGS LFS
Sbjct: 661 KVIYCTSLNWSADGSTLFS 679
Score = 33.1 bits (74), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 81/208 (38%), Gaps = 28/208 (13%)
Query: 302 HEQLMKRLRPAPSAEEVTYSSSRHQT---WSL--DDLPRTVAVSLHQGSTVISMDF-HPS 355
H ++ + ++ S+SR ++ W L DD VA G + D S
Sbjct: 381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS 440
Query: 356 HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415
L GS +GE+ LW+LA A S KDV VA+S
Sbjct: 441 DGQFALSGSWDGELRLWDLA---------------AGVSTRRFVGHTKDVL----SVAFS 481
Query: 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLL-CVVTCGDD 474
D + A I+L++ G + H V+ + F+ PN L +V+ D
Sbjct: 482 LDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFS-PNTLQPTIVSASWD 540
Query: 475 KLIKVWELSGRKLFN-FEGHEAPVYSIC 501
K +KVW LS KL + GH V ++
Sbjct: 541 KTVKVWNLSNCKLRSTLAGHTGYVSTVA 568
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 894 DSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSI 944
D T+ ++N+ +++S L GH ++ +A S ++ S G D + +W +
Sbjct: 540 DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL 590
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 448 DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR--KLFN-FEGHEAPVYSICPHH 504
+AH ++D Y K TC DK IK++E+ G KL + GHE PV+ + H
Sbjct: 6 NAHNEXIHDAVXDYYGKRXA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 505 KENIQFIFSTAIDGKIKAW 523
+ + S + DGK+ W
Sbjct: 64 PKFGTILASCSYDGKVXIW 82
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 11/140 (7%)
Query: 878 LAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADA 937
+ F P D +A G ED I I+++ ++ L+GH++ I L + S + LVS D
Sbjct: 129 VCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDR 187
Query: 938 QLCVWSIDTWEKRKSVTIHIPAGKTPT----GDTRVQFNADQVRMLVVHETQLAIYDASK 993
+ +W + T + S+T+ I G T GD + R + V +++ +
Sbjct: 188 TVRIWDLRTGQ--CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL-VER 244
Query: 994 MERIRQVGSPH---ICSIIF 1010
++ + G+ H + S++F
Sbjct: 245 LDSENESGTGHKDSVYSVVF 264
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 89/216 (41%), Gaps = 22/216 (10%)
Query: 454 VNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSICPHHKENIQFIF 512
+ + F+ K L T +D+LI++W++ RK+ +GHE +YS+ + + +
Sbjct: 126 IRSVCFSPDGKFL--ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSL--DYFPSGDKLV 181
Query: 513 STAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK-----DGDS-FL 566
S + D ++ W T + T + DG + + + D ++ FL
Sbjct: 182 SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL 241
Query: 567 VEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626
VE +SE + G + VV F ++ D +K W++ N N ++
Sbjct: 242 VERLDSE---NESGTGHKDSVYSVV-FTRDGQSVVSGSLDRSVKLWNLQNAN----NKSD 293
Query: 627 GGLPNLPRLRFSKEGN---LLAVTTADNGFKILANA 659
PN + G+ +L+V T N IL+ +
Sbjct: 294 SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS 329
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 50/237 (21%), Positives = 99/237 (41%), Gaps = 42/237 (17%)
Query: 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDL----AFAYPNK 464
+ V +SPDG ++ LI+++ D+ + G D+ F +K
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIW------DIENRKIVMILQGHEQDIYSLDYFPSGDK 179
Query: 465 LLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524
L V+ D+ +++W+L + E V ++ + ++I + ++D ++ W
Sbjct: 180 L---VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG-KYIAAGSLDRAVRVWD 235
Query: 525 YDT--MGSRVDYD---APGH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWN------- 570
+T + R+D + GH +++++ DG + S D + WN
Sbjct: 236 SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVKLWNLQNANNK 291
Query: 571 -----ESEGTIKRTYAGFRKKSNGVVQFDTTQN--HFLAVGEDSQIKFWDMDNVNIL 620
+ GT + TY G + + V+ TTQN + L+ +D + FWD + N L
Sbjct: 292 SDSKTPNSGTCEVTYIGHK---DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 345
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/149 (20%), Positives = 63/149 (42%), Gaps = 17/149 (11%)
Query: 846 VMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNV-- 902
++S +G + + ++++ T + T +S T +A P D IA G+ D + +++
Sbjct: 180 LVSGSGDRTVRIWDLRTGQCSLT-LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 238
Query: 903 -----RVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHI 957
R+D GH+ + + F+ +VS D + +W++ +
Sbjct: 239 GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD----- 293
Query: 958 PAGKTP-TGDTRVQFNADQVRMLVVHETQ 985
KTP +G V + + +L V TQ
Sbjct: 294 --SKTPNSGTCEVTYIGHKDFVLSVATTQ 320
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 63/285 (22%), Positives = 114/285 (40%), Gaps = 51/285 (17%)
Query: 356 HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415
H +LL GS + +++W ++ + F++ D+ A I + V VAWS
Sbjct: 69 HTSLLAAGSFDSTVSIWA---KEESADRTFEM-DLLA--------IIEGHENEVKGVAWS 116
Query: 416 PDGNYVGVAFTKHLIQLYSYAGSND-------LRQHSQIDAHVGAVNDLAFAYPNKLLCV 468
DG Y+ + ++ S + L++HSQ HV +P++ L
Sbjct: 117 NDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHV-------IWHPSEALLA 169
Query: 469 VTCGDDKLIKVW---ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLY 525
+ DD +++W + + GHE V+S E + + S + D ++ W Y
Sbjct: 170 SSSYDDT-VRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKY 228
Query: 526 DTMGSRVDYDAPGHW-CTTMLYSADGSRLFSCGTSKDG-------DSFLVEWNESEGTIK 577
MG D D W C +L ++++ +G D L + E +G K
Sbjct: 229 --MGD--DEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWK 284
Query: 578 RTYAGFRKKSNGVVQFDTTQ------NHFLAV-GEDSQIKFWDMD 615
+A R +GV + + + LA G+D + FW ++
Sbjct: 285 -VFAK-RALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE 327
Score = 29.6 bits (65), Expect = 8.3, Method: Composition-based stats.
Identities = 31/150 (20%), Positives = 62/150 (41%), Gaps = 16/150 (10%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSND----LRQHSQIDAHVGAVNDLAFAYPN 463
++ VAW P + + + +++ S D + + I+ H V +A++ N
Sbjct: 60 AIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS--N 117
Query: 464 KLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW 523
+ TC DK + +WE + G E S+ H ++++ + + + +
Sbjct: 118 DGYYLATCSRDKSVWIWET------DESGEEYECISVLQEHSQDVKHVIWHPSEALLASS 171
Query: 524 LY-DTMGSRVDYDAPGHW-CTTMLYSADGS 551
Y DT+ DYD W C +L +G+
Sbjct: 172 SYDDTVRIWKDYD--DDWECVAVLNGHEGT 199
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 842 NDSYVMSATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIY 900
+D Y++SA+G + I ++N T + + T L + + ++ G+ D+TI ++
Sbjct: 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLW 321
Query: 901 NVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSI 944
++ L+GH++ + + F +VS D ++ VW +
Sbjct: 322 DIECGACLRVLEGHEELVRCIRFDNKR--IVSGAYDGKIKVWDL 363
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 884 DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 943
D+ I G D+TI I++ E K L GH + L + ++++ +D+ + VW
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE--RVIITGSSDSTVRVWD 199
Query: 944 IDTWEKRKSVTIHIPA 959
++T E ++ H A
Sbjct: 200 VNTGEMLNTLIHHCEA 215
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 67/181 (37%), Gaps = 21/181 (11%)
Query: 439 NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVY 498
N L + H G+V L Y ++ ++T D ++VW+++ ++ N H
Sbjct: 161 NTLECKRILTGHTGSV--LCLQYDERV--IITGSSDSTVRVWDVNTGEMLNTLIHHCEAV 216
Query: 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP----GHWCTTMLYSADGSRLF 554
H + N + + + D I W M S D GH + D +
Sbjct: 217 ---LHLRFNNGMMVTCSKDRSIAVW---DMASPTDITLRRVLVGHRAAVNVVDFDDKYI- 269
Query: 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614
S GD + WN S RT G ++ G+ ++ D+ I+ WD+
Sbjct: 270 ---VSASGDRTIKVWNTSTCEFVRTLNGHKR---GIACLQYRDRLVVSGSSDNTIRLWDI 323
Query: 615 D 615
+
Sbjct: 324 E 324
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 884 DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 943
D+ I + D TI ++N E L GH++ I L + L +VS +D + +W
Sbjct: 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRL--VVSGSSDNTIRLWD 322
Query: 944 ID 945
I+
Sbjct: 323 IE 324
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 21/169 (12%)
Query: 450 HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE----GHEAPVYSICPHHK 505
H AV L + N ++ VTC D+ I VW+++ GH A V +
Sbjct: 212 HCEAV--LHLRFNNGMM--VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV----D 263
Query: 506 ENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565
+ ++I S + D IK W T + + Y RL G+S D+
Sbjct: 264 FDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSS---DNT 317
Query: 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614
+ W+ G R G + ++FD + ++ D +IK WD+
Sbjct: 318 IRLWDIECGACLRVLEGHEELVR-CIRFDNKR--IVSGAYDGKIKVWDL 363
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 834 VPCIALSKNDSYVMS-ATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT 892
+ IA S + Y+ S A G I++F++ T K++ T L F P D+ ++ +
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTAS 225
Query: 893 EDSTIHIYNVRVDEVKSKLKGHQKRITGLAF 923
+D I IY+V+ + L GH + +AF
Sbjct: 226 DDGYIKIYDVQHANLAGTLSGHASWVLNVAF 256
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC 471
+A+SPDG Y+ +I ++ A L ++ H + L F+ ++LL VT
Sbjct: 170 IAYSPDGKYLASGAIDGIINIFDIATGKLLH---TLEGHAMPIRSLTFSPDSQLL--VTA 224
Query: 472 GDDKLIKVWELSGRKLFN-FEGHEAPVYSI--CP 502
DD IK++++ L GH + V ++ CP
Sbjct: 225 SDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP 258
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 9/122 (7%)
Query: 825 VAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQD 884
V V++ +P A S D++ I L+++ K + + + P + LAF P D
Sbjct: 83 VVSVDISHTLPIAASSSLDAH--------IRLWDLENGKQIKSIDAGPVDAWTLAFSP-D 133
Query: 885 NNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSI 944
+ +A GT ++I+ V + + L K I +A+S L S D + ++ I
Sbjct: 134 SQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDI 193
Query: 945 DT 946
T
Sbjct: 194 AT 195
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 88/213 (41%), Gaps = 15/213 (7%)
Query: 446 QIDAHVGAVNDLAFAYPNK--LLCVVTCGDDKLIKVWELSGRKL---FNFEGHEAPVYSI 500
Q AH A+ +A+ K VVT D L+KVW+ +L ++ EGH+ V S+
Sbjct: 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSV 86
Query: 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560
H + S+++D I+ W + DA T+ +S D L +
Sbjct: 87 DISH--TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVG 144
Query: 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL 620
+ F VE + E ++ R K + + + + D I +D+ +L
Sbjct: 145 KVNIFGVESGKKEYSLDT-----RGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLL 199
Query: 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653
+ EG + L FS + LL VT +D+G+
Sbjct: 200 HTL--EGHAMPIRSLTFSPDSQLL-VTASDDGY 229
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 883 QDNNIIAIGTEDSTIHIYNVRVD--EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLC 940
+++ + G+ D + ++ R + +++ L+GHQ + + S +L I SS DA +
Sbjct: 46 ENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 105
Query: 941 VWSIDTWEKRKSV 953
+W ++ ++ KS+
Sbjct: 106 LWDLENGKQIKSI 118
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Query: 834 VPCIALS--KNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPA--STFLAFHPQDNNIIA 889
V C+A S K+ ++ + +I L++ K + P T LA+HPQ + +
Sbjct: 172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFV 231
Query: 890 IGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFST-SLNILVSSGADAQLCV 941
G E+ T+ + + + H + +TGL FS S+ L S D L V
Sbjct: 232 FGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAV 284
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 13/120 (10%)
Query: 837 IALSKNDSYVMSA-TGGKISLFNMMTFKVMTT----------FMSPPPASTFLAFHPQDN 885
I++S +++Y+ + GKI L+++ + +V T+ +S PA +
Sbjct: 494 ISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEE 553
Query: 886 NIIAIGTEDSTIHIYNV-RVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSI 944
+++A G+ D+ I IY+V R ++ L H+ + L + T + LVSSGADA + W++
Sbjct: 554 DLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP-STLVSSGADACIKRWNV 612
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 894 DSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 943
D T++ Y + DEV + GH K IT L ++N L+S D ++ WS
Sbjct: 318 DGTLNFYELGHDEVLKTISGHNKGITAL----TVNPLISGSYDGRIMEWS 363
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 90/223 (40%), Gaps = 30/223 (13%)
Query: 360 LLVGSSNGEITLWELAMRDRL---VSKPFKIWDMAACSLPFQASI------FKDVPISVS 410
L VG+S+ E+ LW++ + RL S ++ ++ S + DV ++
Sbjct: 173 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH 232
Query: 411 RVA-------------WSPDGNYVGVAFTKHLIQLYSYA-GSNDLRQHSQIDAHVGAVND 456
VA W+PDG ++ +L+ ++ A G H GAV
Sbjct: 233 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 292
Query: 457 LAFA-YPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSI--CPHHKENIQFIF 512
+A+ + + +L D+ I++W + SG L + H + V SI PH+KE I
Sbjct: 293 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELIS--G 349
Query: 513 STAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555
++ W Y TM + ++ S DG+ + S
Sbjct: 350 HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVAS 392
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 832 EAVPCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 890
E + +A K +Y+ T ++ L+++ K + S L++ ++ I++
Sbjct: 159 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSS 215
Query: 891 GTEDSTIHIYNVRVDEVK-SKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942
G+ IH ++VRV E + L GH + + GL ++ L S G D + VW
Sbjct: 216 GSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 268
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVN 455
+S VAW +GNY+ V + +QL+ LR + A VG+++
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS 207
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKL 465
PIS AW+ D + + H + +Y +G+ ++ H ++ H G V + +A +
Sbjct: 10 PISCH--AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-ELKEHNGQVTGIDWAPDSNR 66
Query: 466 LCVVTCGDDKLIKVWELSGR 485
+VTCG D+ VW L GR
Sbjct: 67 --IVTCGTDRNAYVWTLKGR 84
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 12/74 (16%)
Query: 883 QDNNIIAIGTEDSTIHIYN------VRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGAD 936
+D IAI + +HIY V+V E LK H ++TG+ ++ N +V+ G D
Sbjct: 18 KDRTQIAICPNNHEVHIYEKSGNKWVQVHE----LKEHNGQVTGIDWAPDSNRIVTCGTD 73
Query: 937 AQLCVWSID--TWE 948
VW++ TW+
Sbjct: 74 RNAYVWTLKGRTWK 87
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 90/223 (40%), Gaps = 30/223 (13%)
Query: 360 LLVGSSNGEITLWELAMRDRL---VSKPFKIWDMAACSLPFQASI------FKDVPISVS 410
L VG+S+ E+ LW++ + RL S ++ ++ S + DV ++
Sbjct: 162 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH 221
Query: 411 RVA-------------WSPDGNYVGVAFTKHLIQLYSYA-GSNDLRQHSQIDAHVGAVND 456
VA W+PDG ++ +L+ ++ A G H GAV
Sbjct: 222 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 281
Query: 457 LAFA-YPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSI--CPHHKENIQFIF 512
+A+ + + +L D+ I++W + SG L + H + V SI PH+KE I
Sbjct: 282 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELIS--G 338
Query: 513 STAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555
++ W Y TM + ++ S DG+ + S
Sbjct: 339 HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVAS 381
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 832 EAVPCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 890
E + +A K +Y+ T ++ L+++ K + S L++ ++ I++
Sbjct: 148 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSS 204
Query: 891 GTEDSTIHIYNVRVDEVK-SKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942
G+ IH ++VRV E + L GH + + GL ++ L S G D + VW
Sbjct: 205 GSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVN 455
+S VAW +GNY+ V + +QL+ LR + A VG+++
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS 196
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKL 465
PIS AW+ D + + H + +Y +G+ ++ H ++ H G V + +A +
Sbjct: 10 PISCH--AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-ELKEHNGQVTGVDWAPDSNR 66
Query: 466 LCVVTCGDDKLIKVWELSGR 485
+VTCG D+ VW L GR
Sbjct: 67 --IVTCGTDRNAYVWTLKGR 84
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 12/74 (16%)
Query: 883 QDNNIIAIGTEDSTIHIYN------VRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGAD 936
+D IAI + +HIY V+V E LK H ++TG+ ++ N +V+ G D
Sbjct: 18 KDRTQIAICPNNHEVHIYEKSGNKWVQVHE----LKEHNGQVTGVDWAPDSNRIVTCGTD 73
Query: 937 AQLCVWSID--TWE 948
VW++ TW+
Sbjct: 74 RNAYVWTLKGRTWK 87
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 84/373 (22%), Positives = 138/373 (36%), Gaps = 80/373 (21%)
Query: 302 HEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLL 361
H + ++ P ++ S+SR +T + L R + G ++ H SH +
Sbjct: 14 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRD---ETNYGIPQRALRGH-SHFVSDV 69
Query: 362 VGSSNGEITL---WELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418
V SS+G+ L W+ +R +WD+ + + F V VA+S D
Sbjct: 70 VISSDGQFALSGSWDGTLR---------LWDLTTGTTTRR---FVGHTKDVLSVAFSSDN 117
Query: 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478
+ I+L++ G + Q ++H V+ + F+ + +V+CG DKL+K
Sbjct: 118 RQIVSGSRDKTIKLWNTLGV--CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 175
Query: 479 VWELSGRKL-FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP 537
VW L+ KL N GH +
Sbjct: 176 VWNLANCKLKTNHIGHTGYL---------------------------------------- 195
Query: 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ 597
T+ S DGS S G KDG + L W+ +EG K Y + F +
Sbjct: 196 ----NTVTVSPDGSLCASGG--KDGQAML--WDLNEG--KHLYTLDGGDIINALCF-SPN 244
Query: 598 NHFLAVGEDSQIKFWDMDNVNI-------LTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650
++L IK WD++ I + ST ++ P L +S +G L D
Sbjct: 245 RYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTD 304
Query: 651 NGFKILANAIGLR 663
N ++ IG R
Sbjct: 305 NLVRVWQVTIGTR 317
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 28/60 (46%)
Query: 884 DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 943
D G+ D T+ ++++ + GH K + +AFS+ +VS D + +W+
Sbjct: 74 DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 133
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Query: 834 VPCIALSKNDSYVMSATGGK-ISLFNMM-TFKVMTTFMSPPPASTFLAFHPQDNN-IIAI 890
V +A S ++ ++S + K I L+N + K S + + F P +N II
Sbjct: 108 VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS 167
Query: 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSID 945
D + ++N+ ++K+ GH + + S ++ S G D Q +W ++
Sbjct: 168 CGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN 222
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 877 FLAFHP-QDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGA 935
++ ++P D + ++D TI I++ + + L+GH ++ F +L I++S
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248
Query: 936 DAQLCVWSIDTWEKRKSVTI 955
D L +W+ T++ K++ +
Sbjct: 249 DGTLKIWNSSTYKVEKTLNV 268
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 877 FLAFHP-QDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGA 935
++ ++P D + ++D TI I++ + + L+GH ++ F +L I++S
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248
Query: 936 DAQLCVWSIDTWEKRKSVTI 955
D L +W+ T++ K++ +
Sbjct: 249 DGTLKIWNSSTYKVEKTLNV 268
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 84/373 (22%), Positives = 138/373 (36%), Gaps = 80/373 (21%)
Query: 302 HEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLL 361
H + ++ P ++ S+SR +T + L R + G ++ H SH +
Sbjct: 37 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRD---ETNYGIPQRALRGH-SHFVSDV 92
Query: 362 VGSSNGEITL---WELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418
V SS+G+ L W+ +R +WD+ + + F V VA+S D
Sbjct: 93 VISSDGQFALSGSWDGTLR---------LWDLTTGTTTRR---FVGHTKDVLSVAFSSDN 140
Query: 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478
+ I+L++ G + Q ++H V+ + F+ + +V+CG DKL+K
Sbjct: 141 RQIVSGSRDKTIKLWNTLGV--CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 198
Query: 479 VWELSGRKL-FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP 537
VW L+ KL N GH +
Sbjct: 199 VWNLANCKLKTNHIGHTGYL---------------------------------------- 218
Query: 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ 597
T+ S DGS S G KDG + L W+ +EG K Y + F +
Sbjct: 219 ----NTVTVSPDGSLCASGG--KDGQAML--WDLNEG--KHLYTLDGGDIINALCF-SPN 267
Query: 598 NHFLAVGEDSQIKFWDMDNVNI-------LTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650
++L IK WD++ I + ST ++ P L +S +G L D
Sbjct: 268 RYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTD 327
Query: 651 NGFKILANAIGLR 663
N ++ IG R
Sbjct: 328 NLVRVWQVTIGTR 340
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 28/60 (46%)
Query: 884 DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 943
D G+ D T+ ++++ + GH K + +AFS+ +VS D + +W+
Sbjct: 97 DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 156
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Query: 834 VPCIALSKNDSYVMSATGGK-ISLFNMM-TFKVMTTFMSPPPASTFLAFHPQDNN-IIAI 890
V +A S ++ ++S + K I L+N + K S + + F P +N II
Sbjct: 131 VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS 190
Query: 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSID 945
D + ++N+ ++K+ GH + + S ++ S G D Q +W ++
Sbjct: 191 CGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN 245
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 877 FLAFHPQ-DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGA 935
++ ++P D + ++D TI I++ + + L+GH ++ F +L I++S
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248
Query: 936 DAQLCVWSIDTWEKRKSVTIHI 957
D L +W+ T++ K++ + +
Sbjct: 249 DGTLKIWNSSTYKVEKTLNVGL 270
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 877 FLAFHPQ-DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGA 935
++ ++P D + ++D TI I++ + + L+GH ++ F +L I++S
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248
Query: 936 DAQLCVWSIDTWEKRKSVTIHI 957
D L +W+ T++ K++ + +
Sbjct: 249 DGTLKIWNSSTYKVEKTLNVGL 270
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 883 QDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942
Q+N + D T+ ++++R + GHQ + +AFS ++S+GA+ ++ +W
Sbjct: 86 QENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLW 145
Query: 943 SI 944
+I
Sbjct: 146 NI 147
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 91/211 (43%), Gaps = 25/211 (11%)
Query: 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPIS 408
S+ +HP+H + + VGS G+I LW ++D KP I + A S
Sbjct: 124 SLAWHPTHPSTVAVGSKGGDIMLWNFGIKD----KPTFIKGIGAGG-------------S 166
Query: 409 VSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
++ + ++P + N + + +L + G N LR + D L + +++
Sbjct: 167 ITGLKFNPLNTNQFYASSMEGTTRLQDFKG-NILRVFASSDTINIWFCSLDVSASSRM-- 223
Query: 468 VVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527
VVT + + + + G++L+N H+ V + + + F+ + ++D +K W
Sbjct: 224 VVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCD-WFLATASVDQTVKIWDLRQ 282
Query: 528 MGSRVD--YDAPG-HWCTTMLYSADGSRLFS 555
+ + Y P H +S DG+RL +
Sbjct: 283 VRGKASFLYSLPHRHPVNAACFSPDGARLLT 313
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 875 STFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK--GHQKRITGLAFS 924
+T LA+HP + +A+G++ I ++N + + + +K G ITGL F+
Sbjct: 122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFN 173
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 832 EAVPCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 890
E + +A K +Y+ T ++ L+++ K + S L++ ++ I++
Sbjct: 68 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSS 124
Query: 891 GTEDSTIHIYNVRVDEVK-SKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942
G+ IH ++VRV E + L GH + + GL ++ L S G D + VW
Sbjct: 125 GSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 89/225 (39%), Gaps = 34/225 (15%)
Query: 360 LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK-----------DVPIS 408
L VG+S+ E+ LW++ + RL + SL + + I DV ++
Sbjct: 82 LAVGTSSAEVQLWDVQQQKRL--RNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVA 139
Query: 409 VSRVA-------------WSPDGNYVGVAFTKHLIQLYSYA-GSNDLRQHSQIDAHVGAV 454
VA W+PDG ++ +L+ ++ A G H GAV
Sbjct: 140 EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAV 199
Query: 455 NDLAFA-YPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSI--CPHHKENIQF 510
+A+ + + +L D+ I++W + SG L + H + V SI PH+KE I
Sbjct: 200 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELIS- 257
Query: 511 IFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555
++ W Y TM + ++ S DG+ + S
Sbjct: 258 -GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVAS 301
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVN 455
+S VAW +GNY+ V + +QL+ LR + A VG+++
Sbjct: 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS 116
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 834 VPCIAL--SKNDSYVMSATGGKISLFNMMTFKVMT--TFMSPPPASTFLAFHPQDNNIIA 889
V C+A K+ ++ G+I L++ K T F + T + +HP+ ++ A
Sbjct: 184 VNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFA 243
Query: 890 IGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFS 924
G E + + N++ + H + ITGLA+S
Sbjct: 244 CGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYS 278
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 12/96 (12%)
Query: 469 VTCGDDKLIKVWELSGR---KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLY 525
V+ G D +KVW+LS + K +N E + CP K+ I S DG+I W
Sbjct: 155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACP-GKDTI--FLSCGEDGRILLW-- 209
Query: 526 DTM----GSRVDYDAPGHWCTTMLYSADGSRLFSCG 557
DT +R+D+ A T++ + + F+CG
Sbjct: 210 DTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACG 245
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 19/122 (15%)
Query: 360 LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419
+LV S +G + LWE+ ++ L+ F ++ + S+F D +VS
Sbjct: 108 ILVASDSGAVELWEILEKESLLVNKFAKYEHD--DIVKTLSVFSDGTQAVSG-------- 157
Query: 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479
G F+ ++++ + L+ + +AH VN +A A P K ++CG+D I +
Sbjct: 158 --GKDFS---VKVWDLSQKAVLKSY---NAHSSEVNCVA-ACPGKDTIFLSCGEDGRILL 208
Query: 480 WE 481
W+
Sbjct: 209 WD 210
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 553 LFSCGTS--KDGDSFLVE-WNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQI 609
+FS GT G F V+ W+ S+ + ++Y + N V FL+ GED +I
Sbjct: 147 VFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRI 206
Query: 610 KFWD 613
WD
Sbjct: 207 LLWD 210
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 91/211 (43%), Gaps = 25/211 (11%)
Query: 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPIS 408
S+ +HP+H + + VGS G+I LW ++D KP I + A S
Sbjct: 124 SLAWHPTHPSTVAVGSKGGDIMLWNFGIKD----KPTFIKGIGAGG-------------S 166
Query: 409 VSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
++ + ++P + N + + +L + G N LR + D L + +++
Sbjct: 167 ITGLKFNPLNTNQFYASSMEGTTRLQDFKG-NILRVFASSDTINIWFCSLDVSASSRM-- 223
Query: 468 VVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527
VVT + + + + G++L+N H+ V + + + F+ + ++D +K W
Sbjct: 224 VVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCD-WFLATASVDQTVKIWDLRQ 282
Query: 528 MGSRVD--YDAPG-HWCTTMLYSADGSRLFS 555
+ + Y P H +S DG+RL +
Sbjct: 283 VRGKASFLYSLPHRHPVNAACFSPDGARLLT 313
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 875 STFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK--GHQKRITGLAFS 924
+T LA+HP + +A+G++ I ++N + + + +K G ITGL F+
Sbjct: 122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFN 173
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 91/211 (43%), Gaps = 25/211 (11%)
Query: 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPIS 408
S+ +HP+H + + VGS G+I LW ++D KP I + A S
Sbjct: 125 SLAWHPTHPSTVAVGSKGGDIMLWNFGIKD----KPTFIKGIGAGG-------------S 167
Query: 409 VSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
++ + ++P + N + + +L + G N LR + D L + +++
Sbjct: 168 ITGLKFNPLNTNQFYASSMEGTTRLQDFKG-NILRVFASSDTINIWFCSLDVSASSRM-- 224
Query: 468 VVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527
VVT + + + + G++L+N H+ V + + + F+ + ++D +K W
Sbjct: 225 VVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCD-WFLATASVDQTVKIWDLRQ 283
Query: 528 MGSRVD--YDAPG-HWCTTMLYSADGSRLFS 555
+ + Y P H +S DG+RL +
Sbjct: 284 VRGKASFLYSLPHRHPVNAACFSPDGARLLT 314
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 875 STFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK--GHQKRITGLAFS 924
+T LA+HP + +A+G++ I ++N + + + +K G ITGL F+
Sbjct: 123 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFN 174
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 885 NNIIAIGTEDSTIHIYNVRVDEVKSKLKG---HQKRITGLAFSTSLNILVSSGADAQLCV 941
+NI+ G DST+ I++++ + L+G HQ +T L F+ N +++S D + +
Sbjct: 329 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKL 386
Query: 942 WSIDTWE 948
W + T E
Sbjct: 387 WDLKTGE 393
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 6/138 (4%)
Query: 831 EEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 890
+ + C+ N V + + +++ +T K + T + + +NII
Sbjct: 119 DHVITCLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG---VWSSQMRDNIIIS 174
Query: 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKR 950
G+ D T+ ++N E L GH + + +VS DA L VW I+T +
Sbjct: 175 GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDIETGQCL 232
Query: 951 KSVTIHIPAGKTPTGDTR 968
+ H+ A + D R
Sbjct: 233 HVLMGHVAAVRCVQYDGR 250
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 22/105 (20%)
Query: 885 NNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSL--NILVSSGADAQLCVW 942
N I G++D+T+ +++ + L GH TG +S+ + NI++S D L VW
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGH----TGGVWSSQMRDNIIISGSTDRTLKVW 184
Query: 943 SIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLA 987
+ +T E IH G T T VR + +HE ++
Sbjct: 185 NAETGE-----CIHTLYGHTST-----------VRCMHLHEKRVV 213
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 17/116 (14%)
Query: 880 FHPQDNNIIAIGTEDSTIHIYNVRVDEVKS----------KLKGHQKRITGLAFSTSLN- 928
+ PQ+ +IIA T S + +++ K +L+GHQK GL+++++L+
Sbjct: 134 YXPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSG 193
Query: 929 ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHET 984
L+S+ D +C+W I+ K + + A TG + V + V ++HE+
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKI---VDAKAIFTGHSAV---VEDVAWHLLHES 243
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 878 LAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK-SKLKGHQKRITGLAFS-TSLNILVSSGA 935
L+F+P I+A G+ D T+ ++++R ++K + H+ I + +S + IL SSG
Sbjct: 281 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGT 340
Query: 936 DAQLCVWSI 944
D +L VW +
Sbjct: 341 DRRLNVWDL 349
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 37.0 bits (84), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 878 LAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK-SKLKGHQKRITGLAFS-TSLNILVSSGA 935
L+F+P I+A G+ D T+ ++++R ++K + H+ I + +S + IL SSG
Sbjct: 281 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGT 340
Query: 936 DAQLCVWSI 944
D +L VW +
Sbjct: 341 DRRLNVWDL 349
Score = 37.0 bits (84), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 17/116 (14%)
Query: 880 FHPQDNNIIAIGTEDSTIHIYNVRVDEVKS----------KLKGHQKRITGLAFSTSLN- 928
+ PQ+ +IIA T S + +++ K +L+GHQK GL+++++L+
Sbjct: 134 YMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSG 193
Query: 929 ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHET 984
L+S+ D +C+W I+ K + + A TG + V + V ++HE+
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKI---VDAKAIFTGHSAV---VEDVAWHLLHES 243
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDR 379
V S+++HP+H T + VGS G+I LW+ ++++
Sbjct: 76 VTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK 108
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 67/151 (44%), Gaps = 14/151 (9%)
Query: 876 TFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKG---HQKRITGLAFS-TSLNILV 931
T F+P+ + ++A + D+T+ ++++R + K+ H+K + F+ T L+
Sbjct: 208 THAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLL 267
Query: 932 SSGADAQLCVWSIDTWEKRKSVTIH----------IPAGKTPTGDTRVQFNADQVRMLVV 981
++ ++ V+S W K + IH I A P D V ++L+
Sbjct: 268 TTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLN 327
Query: 982 HETQLAIYDASKMERIRQVGSPHICSIIFCN 1012
+ + IYDA+ + Q+ P+ II N
Sbjct: 328 DKRTIDIYDANSGGLVHQLRDPNAAGIISLN 358
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 80/208 (38%), Gaps = 43/208 (20%)
Query: 387 IWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQ 446
+W+ + S+ A D V+ V WS DG+++ V L+ +Y LR +
Sbjct: 117 VWNADSGSVSALAET--DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAG 174
Query: 447 IDAHVGAV------------------NDL------------------AFAYPNKLLCVVT 470
A VG + +D+ A+ + L + +
Sbjct: 175 HQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLAS 234
Query: 471 CGDDKLIKVWEL-SGRKLFNFEGHEAPVYSI--CPHHKENIQFIFSTAIDGKIKAWLYDT 527
G+D ++++W+ S F H A V ++ CP + N+ +D +I W T
Sbjct: 235 GGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCP-WQSNLLATGGGTMDKQIHFWNAAT 293
Query: 528 MGSRVDYDAPGHWCTTMLYSADGSRLFS 555
G+RV+ G T++++S + S
Sbjct: 294 -GARVNTVDAGSQVTSLIWSPHSKEIMS 320
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 60/132 (45%), Gaps = 7/132 (5%)
Query: 813 WLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSP 871
W SG + A +A + V + S + S++ G G + ++++ + + T
Sbjct: 118 WNADSGSVSA--LAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGH 175
Query: 872 PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV-DEVKSKLKGHQKRITGLAFSTSLNIL 930
L++ + ++++ G+ IH ++VR+ + L+GH + GLA+ + L
Sbjct: 176 QARVGCLSW---NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQL 232
Query: 931 VSSGADAQLCVW 942
S G D + +W
Sbjct: 233 ASGGNDNVVQIW 244
Score = 33.1 bits (74), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 17/165 (10%)
Query: 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFA-YPNKLLC 467
V +AW DG + +++Q++ S + + ++ + H AV +A+ + + LL
Sbjct: 220 VCGLAWRSDGLQLASGGNDNVVQIWDARSS--IPKFTKTN-HNAAVKAVAWCPWQSNLLA 276
Query: 468 VVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSI--CPHHKENIQFIFSTAI--DGKIKAW 523
DK I W + N + V S+ PH KE I ST D + W
Sbjct: 277 TGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKE----IMSTHGFPDNNLSIW 332
Query: 524 LYDTMGSRVDYDAPGHWCTTMLYSA---DGSRLFSCGTSKDGDSF 565
Y + G D P H T +LYSA DG R+ S S + F
Sbjct: 333 SYSSSGLTKQVDIPAH-DTRVLYSALSPDG-RILSTAASDENLKF 375
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDR 379
V S+++HP+H T + VGS G+I LW+ ++++
Sbjct: 75 VTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK 107
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 67/151 (44%), Gaps = 14/151 (9%)
Query: 876 TFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKG---HQKRITGLAFS-TSLNILV 931
T F+P+ + ++A + D+T+ ++++R + K+ H+K + F+ T L+
Sbjct: 207 THAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLL 266
Query: 932 SSGADAQLCVWSIDTWEKRKSVTIH----------IPAGKTPTGDTRVQFNADQVRMLVV 981
++ ++ V+S W K + IH I A P D V ++L+
Sbjct: 267 TTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLN 326
Query: 982 HETQLAIYDASKMERIRQVGSPHICSIIFCN 1012
+ + IYDA+ + Q+ P+ II N
Sbjct: 327 DKRTIDIYDANSGGLVHQLRDPNAAGIISLN 357
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 450 HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQ 509
H G V D+ ++ + +C DK K+W+LS + H+APV +I N
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASC--DKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYS 142
Query: 510 FIFSTAIDGKIKAW 523
+ + + D +K W
Sbjct: 143 CVMTGSWDKTLKFW 156
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF 402
V + FHP H TL VG S+G + W+ R +L + ++AC +IF
Sbjct: 276 VNGIAFHPVHGTLATVG-SDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIF 330
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 883 QDNNIIAIGTEDSTIHIYNV---RVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQL 939
D +A+G +DS +H+Y + V EVK+ + H IT +AFS + LV++ ++
Sbjct: 458 NDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV--HPAEITSVAFSNNGAFLVATDQSRKV 515
Query: 940 CVWSI 944
+S+
Sbjct: 516 IPYSV 520
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 100/250 (40%), Gaps = 45/250 (18%)
Query: 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF 402
Q + S+DF PS ++ GS + + ++E PFK S F
Sbjct: 146 QARAMNSVDFKPSRPFRIISGSDDNTVAIFE--------GPPFKF-----------KSTF 186
Query: 403 KDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQID------AHVGAVND 456
+ V V ++PDG+ I LY+ G + + D AH G+V
Sbjct: 187 GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYN--GVDGTKTGVFEDDSLKNVAHSGSVFG 244
Query: 457 LAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENI----QFIF 512
L ++ P+ + + DK IK+W ++ K+ PV + + I Q +
Sbjct: 245 LTWS-PDGTK-IASASADKTIKIWNVATLKVEK----TIPVGTRIEDQQLGIIWTKQALV 298
Query: 513 STAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570
S + +G I ++ +GS +D GH T + SADG LFS D + + W+
Sbjct: 299 SISANGFIN-FVNPELGS-IDQVRYGHNKAITALSSSADGKTLFSA----DAEGHINSWD 352
Query: 571 ESEGTIKRTY 580
S G R +
Sbjct: 353 ISTGISNRVF 362
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 911 LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIP 958
L+GH ++ L ++ N +VS+ D +L VW+ T +K ++ +H P
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCP 109
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 58/138 (42%), Gaps = 12/138 (8%)
Query: 449 AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL--SGRKLF-NFEGHEAPVYSICPHHK 505
+H ++D Y L TC D+ +K++++ G+ L + GHE PV+ + H
Sbjct: 11 SHEDMIHDAQMDYYGTRL--ATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHP 68
Query: 506 ENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA-----DGSRLFSCGTSK 560
+ S + D K+ W + ++ GH + + S D + +CG+S
Sbjct: 69 MYGNILASCSYDRKVIIWREENGTWEKSHEHAGH--DSSVNSVCWAPHDYGLILACGSSD 126
Query: 561 DGDSFLVEWNESEGTIKR 578
S L E + +K+
Sbjct: 127 GAISLLTYTGEGQWEVKK 144
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Query: 440 DLRQHSQI-----DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW-ELSG--RKLFNFE 491
D+R QI H G V +A+A+P + +C D+ + +W E +G K
Sbjct: 41 DVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHA 100
Query: 492 GHEAPVYSIC--PH 503
GH++ V S+C PH
Sbjct: 101 GHDSSVNSVCWAPH 114
>pdb|3VGZ|A Chain A, Crystal Structure Of E. Coli Ynce
pdb|3VGZ|B Chain B, Crystal Structure Of E. Coli Ynce
pdb|3VGZ|C Chain C, Crystal Structure Of E. Coli Ynce
pdb|3VGZ|D Chain D, Crystal Structure Of E. Coli Ynce
Length = 353
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 11/60 (18%)
Query: 840 SKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHI 899
++N++YV GK+S+ + ++KV+ TF +P HP N +A+ + T+++
Sbjct: 282 ARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT--------HP---NSLALSADGKTLYV 330
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Query: 845 YVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 904
+V A L+++ TF + F P + N A G++D+T ++++R
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRA 257
Query: 905 DEVKSKLKGHQKRITGL---AFSTSLNILVSSGADAQLCVW 942
D+ + H I G+ +FS S +L++ D VW
Sbjct: 258 DQ-ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 53/289 (18%), Positives = 101/289 (34%), Gaps = 75/289 (25%)
Query: 359 LLLVGSSNGEITLWELAMRDRLVSKPFKI-WDMAACSLPFQASIFKDVPISVSRVAWSPD 417
LLL S +G++ +W+ +++ + P + W M A++P
Sbjct: 69 LLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT--------------------CAYAPS 108
Query: 418 GNYVGVAFTKHLIQLYSY-AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476
GNYV ++ +Y+ ++R ++ H G ++ F N+ +VT D
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTT 165
Query: 477 IKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD 535
+W++ +G++ F GH V S+ + + S A D K W
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSL--SLAPDTRLFVSGACDASAKLW------------ 211
Query: 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595
+ EG ++T+ G N + F
Sbjct: 212 ----------------------------------DVREGMCRQTFTGHESDINAICFF-P 236
Query: 596 TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
N F +D+ + +D+ L + + + + + FSK G LL
Sbjct: 237 NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Query: 845 YVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 904
+V A L+++ TF + F P + N A G++D+T ++++R
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRA 257
Query: 905 DEVKSKLKGHQKRITGL---AFSTSLNILVSSGADAQLCVW 942
D+ + H I G+ +FS S +L++ D VW
Sbjct: 258 DQ-ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 53/289 (18%), Positives = 101/289 (34%), Gaps = 75/289 (25%)
Query: 359 LLLVGSSNGEITLWELAMRDRLVSKPFKI-WDMAACSLPFQASIFKDVPISVSRVAWSPD 417
LLL S +G++ +W+ +++ + P + W M A++P
Sbjct: 69 LLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT--------------------CAYAPS 108
Query: 418 GNYVGVAFTKHLIQLYSY-AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476
GNYV ++ +Y+ ++R ++ H G ++ F N+ +VT D
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTT 165
Query: 477 IKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD 535
+W++ +G++ F GH V S+ + + S A D K W
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSL--SLAPDTRLFVSGACDASAKLW------------ 211
Query: 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595
+ EG ++T+ G N + F
Sbjct: 212 ----------------------------------DVREGMCRQTFTGHESDINAICFF-P 236
Query: 596 TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
N F +D+ + +D+ L + + + + + FSK G LL
Sbjct: 237 NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Query: 845 YVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 904
+V A L+++ TF + F P + N A G++D+T ++++R
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRA 257
Query: 905 DEVKSKLKGHQKRITGL---AFSTSLNILVSSGADAQLCVW 942
D+ + H I G+ +FS S +L++ D VW
Sbjct: 258 DQ-ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 52/289 (17%), Positives = 101/289 (34%), Gaps = 75/289 (25%)
Query: 359 LLLVGSSNGEITLWELAMRDRLVSKPFKI-WDMAACSLPFQASIFKDVPISVSRVAWSPD 417
LL+ S +G++ +W+ +++ + P + W M A++P
Sbjct: 69 LLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT--------------------CAYAPS 108
Query: 418 GNYVGVAFTKHLIQLYSY-AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476
GNYV ++ +Y+ ++R ++ H G ++ F N+ +VT D
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTT 165
Query: 477 IKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD 535
+W++ +G++ F GH V S+ + + S A D K W
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSL--SLAPDTRLFVSGACDASAKLW------------ 211
Query: 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595
+ EG ++T+ G N + F
Sbjct: 212 ----------------------------------DVREGMCRQTFTGHESDINAICFF-P 236
Query: 596 TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
N F +D+ + +D+ L + + + + + FSK G LL
Sbjct: 237 NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Query: 845 YVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 904
+V A L+++ TF + F P + N A G++D+T ++++R
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRA 257
Query: 905 DEVKSKLKGHQKRITGL---AFSTSLNILVSSGADAQLCVW 942
D+ + H I G+ +FS S +L++ D VW
Sbjct: 258 DQ-ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 52/289 (17%), Positives = 101/289 (34%), Gaps = 75/289 (25%)
Query: 359 LLLVGSSNGEITLWELAMRDRLVSKPFKI-WDMAACSLPFQASIFKDVPISVSRVAWSPD 417
LL+ S +G++ +W+ +++ + P + W M A++P
Sbjct: 69 LLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT--------------------CAYAPS 108
Query: 418 GNYVGVAFTKHLIQLYSY-AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476
GNYV ++ +Y+ ++R ++ H G ++ F N+ +VT D
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTT 165
Query: 477 IKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD 535
+W++ +G++ F GH V S+ + + S A D K W
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSL--SLAPDTRLFVSGACDASAKLW------------ 211
Query: 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595
+ EG ++T+ G N + F
Sbjct: 212 ----------------------------------DVREGMCRQTFTGHESDINAICFF-P 236
Query: 596 TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
N F +D+ + +D+ L + + + + + FSK G LL
Sbjct: 237 NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
>pdb|3VH0|A Chain A, Crystal Structure Of E. Coli Ynce Complexed With Dna
pdb|3VH0|B Chain B, Crystal Structure Of E. Coli Ynce Complexed With Dna
pdb|3VH0|C Chain C, Crystal Structure Of E. Coli Ynce Complexed With Dna
pdb|3VH0|D Chain D, Crystal Structure Of E. Coli Ynce Complexed With Dna
Length = 353
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 11/60 (18%)
Query: 840 SKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHI 899
++N++YV GK+S+ + ++KV+ TF +P HP N +A+ + T+++
Sbjct: 282 ARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT--------HP---NSLALSADGKTLYV 330
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Query: 845 YVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 904
+V A L+++ TF + F P + N A G++D+T ++++R
Sbjct: 210 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRA 268
Query: 905 DEVKSKLKGHQKRITGL---AFSTSLNILVSSGADAQLCVW 942
D+ + H I G+ +FS S +L++ D VW
Sbjct: 269 DQ-ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 308
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 52/289 (17%), Positives = 101/289 (34%), Gaps = 75/289 (25%)
Query: 359 LLLVGSSNGEITLWELAMRDRLVSKPFKI-WDMAACSLPFQASIFKDVPISVSRVAWSPD 417
LL+ S +G++ +W+ +++ + P + W M A++P
Sbjct: 80 LLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT--------------------CAYAPS 119
Query: 418 GNYVGVAFTKHLIQLYSY-AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476
GNYV ++ +Y+ ++R ++ H G ++ F N+ +VT D
Sbjct: 120 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTT 176
Query: 477 IKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD 535
+W++ +G++ F GH V S+ + + S A D K W
Sbjct: 177 CALWDIETGQQTTTFTGHTGDVMSL--SLAPDTRLFVSGACDASAKLW------------ 222
Query: 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595
+ EG ++T+ G N + F
Sbjct: 223 ----------------------------------DVREGMCRQTFTGHESDINAICFF-P 247
Query: 596 TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
N F +D+ + +D+ L + + + + + FSK G LL
Sbjct: 248 NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 296
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 895 STIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942
STI +Y V E + LKGH K + F ++ L S D + W
Sbjct: 314 STIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/59 (22%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 887 IIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLN-ILVSSGADAQLCVWSI 944
++A+GT + + +++ L+GH++ I +++S + IL ++ AD+++ +W +
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDV 216
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 461 YPNKLLCVVTCGDDKLIKVWELSGRKL--FNFEGHEAPVYSICPHHKENIQFIFSTAIDG 518
+PN+ V T G D ++ +W++ + + HEA ++ + H N + +F+ + DG
Sbjct: 245 HPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEV-HFHPSNPEHLFTCSEDG 303
Query: 519 KIKAW 523
+ W
Sbjct: 304 SLWHW 308
>pdb|2QOR|A Chain A, Crystal Structure Of Plasmodium Vivax Guanylate Kinase
Length = 204
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 30/150 (20%)
Query: 11 LILQFLEE--EKFKESV-----HKLEKESG----FFFNMKYFEEKVQAGDWDEVEKYLSG 59
LI + L E +F+ S+ +K EKE+ +F + FE K++ G + E +KY +
Sbjct: 28 LIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANN 87
Query: 60 FTKVDDNRYSMKI------FFE--IRKQKYL-EALDRQD------KAKAVDILVNDLKVF 104
F + Y + + FE I K L E+ QD K ++DIL+ LK
Sbjct: 88 FYGTLKSEYDLAVGEGKICLFEXNINGVKQLKESKHIQDGIYIFVKPPSIDILLGRLKNR 147
Query: 105 STFNEELFKEITQLLTLSNFRENEQLSKYG 134
+T E + Q LT RE ++ K G
Sbjct: 148 NTEKPEEINKRXQELT----REXDEADKVG 173
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 10/58 (17%)
Query: 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSI 500
H+ + H+ V+D F ++C +D LIK+ + +G L +EGHE+ VY I
Sbjct: 183 HNDVVRHLAVVDDGHF---------ISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCI 231
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 890 IGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEK 949
+GT + I + + + + + H IT L F S L+SS D QL +WS+
Sbjct: 111 LGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 170
Query: 950 RKSVTIH 956
+++ H
Sbjct: 171 PRTLIGH 177
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 890 IGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEK 949
+GT + I + + + + + H IT L F S L+SS D QL +WS+
Sbjct: 114 LGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 173
Query: 950 RKSVTIH 956
+++ H
Sbjct: 174 PRTLIGH 180
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 3/130 (2%)
Query: 312 APSAEEVTYSSSRHQTWSLDDLPRTVAV--SLHQGSTVISMDFHPSHQTLLLVGSSNGEI 369
A + E T + S DDL V + + + ++S ++P +++L G N
Sbjct: 11 ASTVERETQEDDTNSIDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVA 70
Query: 370 TLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPIS-VSRVAWSPDGNYVGVAFTKH 428
L + D+ K +K+ +A PF S + V+ +AWS DGN +
Sbjct: 71 RLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENG 130
Query: 429 LIQLYSYAGS 438
++L++ G+
Sbjct: 131 ELRLWNKTGA 140
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 18/20 (90%)
Query: 43 EKVQAGDWDEVEKYLSGFTK 62
EKV++GD+DE++KY++ F K
Sbjct: 273 EKVKSGDFDEIKKYVNTFMK 292
>pdb|3GBS|A Chain A, Crystal Structure Of Aspergillus Oryzae Cutinase
Length = 197
Score = 30.4 bits (67), Expect = 5.4, Method: Composition-based stats.
Identities = 31/101 (30%), Positives = 42/101 (41%), Gaps = 13/101 (12%)
Query: 528 MGSRVDYDAPGHWC---TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT------IKR 578
+G R D P + T+ A+ LF SK D+ +V S+GT IKR
Sbjct: 63 VGPRYTADLPSNALPEGTSQAAIAEAQGLFEQAVSKCPDTQIVAGGYSQGTAVMNGAIKR 122
Query: 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI 619
A + K GVV F T+N E QI + D V +
Sbjct: 123 LSADVQDKIKGVVLFGYTRN----AQERGQIANFPKDKVKV 159
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404
ST++S+D+HP++ LL G ++ + + +RD +W LPF ++ +
Sbjct: 147 STILSLDWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVW---GSRLPFN-TVCAE 201
Query: 405 VPIS--VSRVAWSPDGNYVGVAFTKH 428
P V V +SP GN +A+ H
Sbjct: 202 YPSGGWVHAVGFSPSGN--ALAYAGH 225
>pdb|1V75|A Chain A, Crystal Structure Of Hemoglobin D From The Aldabra Giant
Tortoise (Geochelone Gigantea) At 2.0 A Resolution
pdb|1WMU|A Chain A, Crystal Structure Of Hemoglobin D From The Aldabra Giant
Tortoise, Geochelone Gigantea, At 1.65 A Resolution
pdb|2Z6N|A Chain A, Crystal Structure Of Carbonmonoxy Hemoglobin D From The
Aldabra Giant Tortoise, Geochelone Gigantea
Length = 141
Score = 30.0 bits (66), Expect = 6.1, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 885 NNIIAIGTEDSTIHIYNVRVDEVKSKLKGH 914
+N+ A +E S +H YN+RVD V KL H
Sbjct: 74 DNLSATLSELSNLHAYNLRVDPVNFKLLSH 103
>pdb|2Z3W|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a
pdb|2Z3Z|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a Complexd
With An Inhibitor
Length = 706
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 507 NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD--GSRLF 554
N QFI+ + DG +LYDT G + G W T D G+RL+
Sbjct: 322 NNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLY 371
>pdb|2DCM|A Chain A, The Crystal Structure Of S603a Mutated Prolyl Tripeptidyl
Aminopeptidase Complexed With Substrate
Length = 706
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 507 NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD--GSRLF 554
N QFI+ + DG +LYDT G + G W T D G+RL+
Sbjct: 322 NNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLY 371
>pdb|2D5L|A Chain A, Crystal Structure Of Prolyl Tripeptidyl Aminopeptidase
From Porphyromonas Gingivalis
pdb|2EEP|A Chain A, Prolyl Tripeptidyl Aminopeptidase Complexed With An
Inhibitor
Length = 706
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 507 NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD--GSRLF 554
N QFI+ + DG +LYDT G + G W T D G+RL+
Sbjct: 322 NNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLY 371
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,628,869
Number of Sequences: 62578
Number of extensions: 1213221
Number of successful extensions: 3480
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 2779
Number of HSP's gapped (non-prelim): 553
length of query: 1012
length of database: 14,973,337
effective HSP length: 108
effective length of query: 904
effective length of database: 8,214,913
effective search space: 7426281352
effective search space used: 7426281352
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)