Query 001790
Match_columns 1012
No_of_seqs 966 out of 4831
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 09:23:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001790.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001790hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0293 WD40 repeat-containing 100.0 9.2E-72 2E-76 544.0 35.8 490 5-660 17-514 (519)
2 KOG0275 Conserved WD40 repeat- 100.0 7E-64 1.5E-68 473.1 33.4 489 4-657 6-507 (508)
3 KOG0319 WD40-repeat-containing 100.0 3.5E-56 7.7E-61 467.3 45.6 578 350-993 25-620 (775)
4 KOG0318 WD40 repeat stress pro 100.0 1.3E-51 2.8E-56 416.0 55.3 561 315-992 30-602 (603)
5 KOG0319 WD40-repeat-containing 100.0 4.7E-52 1E-56 436.3 41.3 532 316-946 74-620 (775)
6 KOG0271 Notchless-like WD40 re 100.0 1E-53 2.3E-58 413.8 25.0 375 327-943 98-479 (480)
7 KOG0291 WD40-repeat-containing 100.0 5.9E-49 1.3E-53 412.9 57.2 519 332-1002 41-622 (893)
8 KOG0306 WD40-repeat-containing 100.0 1.4E-49 3.1E-54 417.3 48.7 514 327-993 47-665 (888)
9 KOG0318 WD40 repeat stress pro 100.0 1.3E-47 2.8E-52 387.1 56.3 544 351-1011 25-582 (603)
10 KOG0291 WD40-repeat-containing 100.0 1.3E-47 2.7E-52 403.0 56.8 521 335-997 87-714 (893)
11 KOG0271 Notchless-like WD40 re 100.0 1E-48 2.2E-53 379.3 28.2 365 401-990 110-479 (480)
12 KOG0306 WD40-repeat-containing 100.0 2.2E-45 4.8E-50 385.9 44.9 475 326-946 90-665 (888)
13 KOG0263 Transcription initiati 100.0 1.6E-42 3.6E-47 369.6 37.2 544 4-617 20-651 (707)
14 KOG0273 Beta-transducin family 100.0 1.9E-42 4.1E-47 345.4 34.7 302 333-661 167-484 (524)
15 KOG0272 U4/U6 small nuclear ri 100.0 7.7E-42 1.7E-46 336.7 22.9 283 341-657 172-458 (459)
16 KOG0276 Vesicle coat complex C 100.0 6.5E-39 1.4E-43 330.1 42.2 473 343-991 12-489 (794)
17 KOG1539 WD repeat protein [Gen 100.0 2.7E-38 5.8E-43 337.1 48.3 565 343-992 75-648 (910)
18 KOG1408 WD40 repeat protein [F 100.0 3.9E-39 8.4E-44 335.9 40.8 500 343-946 77-714 (1080)
19 KOG0279 G protein beta subunit 100.0 1.4E-39 3E-44 303.8 31.0 295 339-659 9-313 (315)
20 KOG0286 G-protein beta subunit 100.0 1.5E-39 3.2E-44 305.3 29.7 293 335-657 45-343 (343)
21 KOG0272 U4/U6 small nuclear ri 100.0 2.4E-40 5.3E-45 326.1 23.8 284 404-792 173-458 (459)
22 KOG1063 RNA polymerase II elon 100.0 2.2E-37 4.8E-42 323.4 44.9 568 336-992 45-699 (764)
23 KOG1408 WD40 repeat protein [F 100.0 4.4E-37 9.5E-42 320.6 41.8 564 348-993 41-714 (1080)
24 KOG0286 G-protein beta subunit 100.0 3.6E-37 7.9E-42 289.3 32.2 249 400-661 49-305 (343)
25 KOG0292 Vesicle coat complex C 100.0 8.3E-35 1.8E-39 311.1 47.3 505 343-981 8-546 (1202)
26 KOG0315 G-protein beta subunit 100.0 3.7E-36 8E-41 275.7 31.3 296 508-924 10-309 (311)
27 KOG0295 WD40 repeat-containing 100.0 2.2E-36 4.8E-41 292.6 25.8 292 334-658 98-405 (406)
28 KOG0276 Vesicle coat complex C 100.0 1.6E-34 3.5E-39 297.9 40.2 437 402-1002 9-462 (794)
29 KOG1539 WD repeat protein [Gen 100.0 4.1E-33 9E-38 297.6 51.8 560 350-1012 39-627 (910)
30 KOG0284 Polyadenylation factor 100.0 6.2E-37 1.3E-41 300.5 20.9 341 284-659 24-380 (464)
31 KOG0296 Angio-associated migra 100.0 5.7E-35 1.2E-39 283.1 34.2 338 446-945 59-398 (399)
32 KOG0273 Beta-transducin family 100.0 2E-35 4.3E-40 295.4 31.6 336 402-945 175-523 (524)
33 KOG0315 G-protein beta subunit 100.0 2.6E-35 5.7E-40 270.1 29.2 283 356-671 9-299 (311)
34 KOG0279 G protein beta subunit 100.0 6.4E-35 1.4E-39 272.7 31.0 294 576-992 7-313 (315)
35 KOG1063 RNA polymerase II elon 100.0 6.9E-34 1.5E-38 297.4 41.9 517 350-1012 20-674 (764)
36 KOG0296 Angio-associated migra 100.0 3.4E-34 7.4E-39 277.8 33.8 328 402-903 60-398 (399)
37 KOG0292 Vesicle coat complex C 100.0 6.4E-33 1.4E-37 296.8 43.7 455 402-1012 5-499 (1202)
38 KOG0645 WD40 repeat protein [G 100.0 1.8E-33 3.9E-38 261.8 31.1 286 342-659 12-311 (312)
39 KOG0265 U5 snRNP-specific prot 100.0 9E-34 2E-38 267.7 27.2 290 335-656 38-335 (338)
40 KOG2106 Uncharacterized conser 100.0 1.2E-31 2.6E-36 270.0 43.8 492 335-992 95-626 (626)
41 KOG0285 Pleiotropic regulator 100.0 4.5E-34 9.7E-39 275.3 24.9 246 400-661 145-391 (460)
42 KOG0285 Pleiotropic regulator 100.0 6.9E-34 1.5E-38 274.0 25.6 285 342-660 149-440 (460)
43 KOG0295 WD40 repeat-containing 100.0 5.5E-34 1.2E-38 276.0 24.8 300 446-944 103-405 (406)
44 KOG2048 WD40 repeat protein [G 100.0 2.9E-30 6.4E-35 270.3 51.9 545 343-991 24-600 (691)
45 KOG0316 Conserved WD40 repeat- 100.0 2.7E-33 5.8E-38 254.7 25.4 287 334-657 6-297 (307)
46 KOG2106 Uncharacterized conser 100.0 9.6E-31 2.1E-35 263.6 46.3 500 349-1011 70-605 (626)
47 KOG0281 Beta-TrCP (transducin 100.0 2.6E-34 5.6E-39 275.5 17.2 275 343-663 196-481 (499)
48 KOG0266 WD40 repeat-containing 100.0 1.2E-32 2.5E-37 307.5 31.5 284 343-658 158-453 (456)
49 KOG0265 U5 snRNP-specific prot 100.0 9.5E-32 2.1E-36 254.1 28.3 249 401-660 42-297 (338)
50 KOG0284 Polyadenylation factor 100.0 5.9E-33 1.3E-37 272.7 18.3 240 406-659 96-337 (464)
51 KOG0282 mRNA splicing factor [ 100.0 5.1E-33 1.1E-37 279.6 18.1 293 333-657 202-503 (503)
52 KOG0645 WD40 repeat protein [G 100.0 6E-31 1.3E-35 245.0 30.3 243 400-659 8-261 (312)
53 KOG0293 WD40 repeat-containing 100.0 4.1E-32 8.9E-37 266.7 23.4 289 533-946 219-514 (519)
54 KOG2048 WD40 repeat protein [G 100.0 2.8E-29 6E-34 263.1 45.9 502 405-992 24-548 (691)
55 KOG0263 Transcription initiati 100.0 3.2E-32 7E-37 291.2 22.8 246 405-661 377-651 (707)
56 KOG1445 Tumor-specific antigen 100.0 3.7E-31 7.9E-36 272.9 29.1 594 342-994 77-800 (1012)
57 cd00200 WD40 WD40 domain, foun 100.0 2.3E-30 5E-35 277.7 35.5 282 342-657 7-289 (289)
58 KOG0278 Serine/threonine kinas 100.0 1.4E-31 3.1E-36 245.5 18.2 290 335-661 5-299 (334)
59 KOG0282 mRNA splicing factor [ 100.0 2.1E-31 4.5E-36 268.0 18.4 298 483-901 203-503 (503)
60 PLN00181 protein SPA1-RELATED; 100.0 1.7E-29 3.8E-34 305.1 38.9 291 342-658 481-792 (793)
61 KOG0266 WD40 repeat-containing 100.0 7E-30 1.5E-34 285.2 31.6 248 405-661 158-411 (456)
62 KOG0281 Beta-TrCP (transducin 100.0 2.1E-31 4.5E-36 255.6 16.4 230 406-661 197-430 (499)
63 KOG0316 Conserved WD40 repeat- 100.0 6.9E-30 1.5E-34 232.6 23.9 248 398-661 9-259 (307)
64 cd00200 WD40 WD40 domain, foun 100.0 1.2E-28 2.5E-33 264.4 36.0 246 402-661 5-251 (289)
65 KOG0640 mRNA cleavage stimulat 100.0 2.9E-29 6.2E-34 237.5 26.6 309 337-658 105-425 (430)
66 KOG0310 Conserved WD40 repeat- 100.0 2E-29 4.4E-34 254.4 26.7 282 343-658 25-308 (487)
67 PLN00181 protein SPA1-RELATED; 100.0 2.4E-28 5.3E-33 295.1 38.5 270 366-661 457-740 (793)
68 KOG0641 WD40 repeat protein [G 100.0 8.5E-28 1.8E-32 217.1 31.3 311 335-659 23-349 (350)
69 KOG0973 Histone transcription 100.0 5.3E-29 1.1E-33 276.2 28.0 305 343-661 12-357 (942)
70 KOG0313 Microtubule binding pr 100.0 1.1E-28 2.4E-33 240.7 25.7 289 333-658 94-417 (423)
71 KOG0288 WD40 repeat protein Ti 100.0 8.1E-30 1.7E-34 251.2 17.8 292 332-656 162-458 (459)
72 KOG0643 Translation initiation 100.0 2.4E-28 5.3E-33 227.0 26.0 287 338-660 4-318 (327)
73 KOG0643 Translation initiation 100.0 2.6E-28 5.6E-33 226.8 26.0 234 401-650 5-252 (327)
74 KOG0278 Serine/threonine kinas 100.0 2.6E-29 5.7E-34 230.7 18.2 291 531-949 7-301 (334)
75 KOG1407 WD40 repeat protein [F 100.0 1E-27 2.3E-32 222.1 27.9 274 342-650 18-293 (313)
76 KOG0275 Conserved WD40 repeat- 100.0 1E-28 2.2E-33 234.9 18.1 251 402-661 209-469 (508)
77 KOG0283 WD40 repeat-containing 100.0 1.8E-27 3.9E-32 257.5 29.2 300 342-661 265-578 (712)
78 KOG0274 Cdc4 and related F-box 100.0 2.4E-27 5.3E-32 262.0 30.3 294 327-663 191-486 (537)
79 KOG0647 mRNA export protein (c 100.0 4.3E-27 9.3E-32 222.9 26.4 273 343-648 26-312 (347)
80 PTZ00421 coronin; Provisional 100.0 1.1E-26 2.5E-31 257.1 34.4 287 343-640 19-314 (493)
81 KOG0640 mRNA cleavage stimulat 100.0 1.6E-27 3.5E-32 225.8 22.4 292 401-792 107-424 (430)
82 KOG0277 Peroxisomal targeting 100.0 1.2E-27 2.7E-32 220.7 20.6 283 348-658 12-308 (311)
83 KOG0313 Microtubule binding pr 100.0 5.7E-27 1.2E-31 228.8 26.0 282 449-902 103-417 (423)
84 KOG1446 Histone H3 (Lys4) meth 100.0 7.8E-26 1.7E-30 217.1 32.6 281 343-659 13-303 (311)
85 KOG0772 Uncharacterized conser 100.0 6.6E-27 1.4E-31 236.7 25.0 301 334-658 156-486 (641)
86 KOG0305 Anaphase promoting com 100.0 1.9E-26 4E-31 243.9 27.4 278 347-661 180-463 (484)
87 KOG0299 U3 snoRNP-associated p 100.0 3.9E-26 8.4E-31 228.9 27.2 293 342-656 140-453 (479)
88 KOG1407 WD40 repeat protein [F 100.0 5.1E-26 1.1E-30 211.0 25.8 275 578-981 14-290 (313)
89 KOG0305 Anaphase promoting com 100.0 3E-26 6.4E-31 242.4 27.1 268 318-617 190-463 (484)
90 KOG0308 Conserved WD40 repeat- 99.9 1.6E-26 3.4E-31 240.8 23.1 286 349-659 29-327 (735)
91 KOG0289 mRNA splicing factor [ 99.9 1E-25 2.3E-30 223.6 27.5 283 345-658 220-505 (506)
92 KOG1446 Histone H3 (Lys4) meth 99.9 9.1E-25 2E-29 209.7 33.0 294 487-947 7-305 (311)
93 KOG0308 Conserved WD40 repeat- 99.9 1E-26 2.2E-31 242.2 20.5 241 411-661 29-287 (735)
94 KOG0301 Phospholipase A2-activ 99.9 7.8E-26 1.7E-30 237.6 26.9 282 337-661 6-290 (745)
95 PTZ00420 coronin; Provisional 99.9 7.2E-25 1.6E-29 243.1 34.8 255 363-641 50-318 (568)
96 KOG0299 U3 snoRNP-associated p 99.9 8.7E-26 1.9E-30 226.4 24.0 282 402-697 138-445 (479)
97 KOG1445 Tumor-specific antigen 99.9 3.8E-25 8.2E-30 228.8 29.2 215 401-619 74-297 (1012)
98 KOG0268 Sof1-like rRNA process 99.9 6.5E-27 1.4E-31 226.8 15.1 283 341-661 63-347 (433)
99 PTZ00421 coronin; Provisional 99.9 5.9E-25 1.3E-29 243.5 32.7 271 405-688 19-314 (493)
100 KOG0288 WD40 repeat protein Ti 99.9 1.8E-26 3.8E-31 227.8 18.0 247 402-662 171-420 (459)
101 KOG1274 WD40 repeat protein [G 99.9 1.8E-22 3.9E-27 219.5 50.1 276 342-656 11-297 (933)
102 KOG0277 Peroxisomal targeting 99.9 7E-26 1.5E-30 209.2 19.8 249 337-614 53-308 (311)
103 KOG0268 Sof1-like rRNA process 99.9 2.1E-26 4.6E-31 223.3 16.0 241 402-661 62-304 (433)
104 KOG0283 WD40 repeat-containing 99.9 2.4E-25 5.1E-30 241.2 24.5 247 404-661 265-534 (712)
105 KOG0274 Cdc4 and related F-box 99.9 2.2E-25 4.8E-30 246.5 24.9 257 327-623 232-490 (537)
106 KOG0973 Histone transcription 99.9 6E-25 1.3E-29 244.2 27.4 248 403-660 10-313 (942)
107 KOG0300 WD40 repeat-containing 99.9 2.6E-25 5.6E-30 211.3 20.8 295 336-661 139-478 (481)
108 KOG0310 Conserved WD40 repeat- 99.9 4.6E-25 9.9E-30 223.1 23.5 284 537-948 25-312 (487)
109 KOG2096 WD40 repeat protein [G 99.9 1.7E-24 3.7E-29 206.3 25.4 312 399-859 79-401 (420)
110 KOG1036 Mitotic spindle checkp 99.9 3.1E-24 6.7E-29 204.8 27.1 267 344-649 13-294 (323)
111 KOG0639 Transducin-like enhanc 99.9 2.9E-25 6.2E-30 223.8 20.0 292 336-658 411-703 (705)
112 KOG0772 Uncharacterized conser 99.9 1.1E-24 2.5E-29 220.6 24.3 305 529-902 158-486 (641)
113 KOG2096 WD40 repeat protein [G 99.9 4E-24 8.6E-29 203.8 26.4 304 488-901 80-400 (420)
114 PTZ00420 coronin; Provisional 99.9 8.8E-24 1.9E-28 234.5 33.1 251 424-690 50-319 (568)
115 KOG0647 mRNA export protein (c 99.9 1.6E-24 3.4E-29 205.6 23.0 276 405-698 26-314 (347)
116 KOG1332 Vesicle coat complex C 99.9 4.6E-25 1E-29 202.6 18.8 253 400-659 5-286 (299)
117 KOG0289 mRNA splicing factor [ 99.9 4.2E-24 9E-29 212.3 25.8 238 407-657 220-460 (506)
118 KOG1963 WD40 repeat protein [G 99.9 4.2E-23 9.2E-28 224.3 35.8 513 411-998 21-589 (792)
119 KOG0294 WD40 repeat-containing 99.9 7.2E-24 1.6E-28 202.3 25.9 243 401-661 38-283 (362)
120 KOG1273 WD40 repeat protein [G 99.9 1E-23 2.2E-28 200.8 25.2 295 332-660 12-323 (405)
121 KOG0300 WD40 repeat-containing 99.9 7.3E-24 1.6E-28 201.5 22.5 323 446-947 143-478 (481)
122 KOG1538 Uncharacterized conser 99.9 3.5E-23 7.7E-28 215.5 29.5 273 346-660 14-294 (1081)
123 KOG0264 Nucleosome remodeling 99.9 7.8E-24 1.7E-28 213.0 22.3 266 336-616 116-405 (422)
124 KOG0641 WD40 repeat protein [G 99.9 6.2E-22 1.3E-26 179.4 31.6 248 405-661 31-305 (350)
125 KOG0301 Phospholipase A2-activ 99.9 4.3E-23 9.4E-28 217.2 26.1 281 575-992 5-288 (745)
126 KOG0294 WD40 repeat-containing 99.9 3.4E-22 7.4E-27 191.0 28.6 181 467-660 3-198 (362)
127 KOG1332 Vesicle coat complex C 99.9 1.4E-23 3E-28 193.0 18.2 252 341-615 8-286 (299)
128 KOG2055 WD40 repeat protein [G 99.9 5.9E-23 1.3E-27 205.9 23.9 287 344-659 213-512 (514)
129 KOG0646 WD40 repeat protein [G 99.9 8.9E-23 1.9E-27 205.4 25.2 296 562-980 16-336 (476)
130 KOG0646 WD40 repeat protein [G 99.9 5.2E-23 1.1E-27 207.1 23.0 223 406-640 81-330 (476)
131 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.5E-21 3.3E-26 210.8 36.5 283 598-1012 2-300 (300)
132 KOG4283 Transcription-coupled 99.9 2E-22 4.3E-27 190.2 25.3 303 339-658 38-364 (397)
133 KOG1963 WD40 repeat protein [G 99.9 1.4E-21 3.1E-26 212.6 34.7 484 348-909 20-589 (792)
134 KOG0639 Transducin-like enhanc 99.9 5.4E-23 1.2E-27 207.5 21.4 283 535-944 416-703 (705)
135 KOG1036 Mitotic spindle checkp 99.9 5.4E-22 1.2E-26 189.6 26.6 242 405-662 12-265 (323)
136 KOG4328 WD40 protein [Function 99.9 2E-22 4.3E-27 202.1 24.4 293 343-659 185-495 (498)
137 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.8E-21 1E-25 206.9 37.3 286 509-973 2-300 (300)
138 KOG2055 WD40 repeat protein [G 99.9 5.5E-22 1.2E-26 199.0 24.7 293 450-793 212-511 (514)
139 KOG0264 Nucleosome remodeling 99.9 5.7E-22 1.2E-26 199.6 24.8 253 401-660 119-405 (422)
140 KOG0650 WD40 repeat nucleolar 99.9 1.1E-21 2.3E-26 202.8 24.8 281 328-658 383-679 (733)
141 KOG1273 WD40 repeat protein [G 99.9 1.2E-21 2.6E-26 186.9 22.1 250 409-670 26-290 (405)
142 KOG1274 WD40 repeat protein [G 99.9 3.8E-21 8.3E-26 209.3 28.7 266 404-692 11-285 (933)
143 KOG0267 Microtubule severing p 99.9 3.1E-23 6.8E-28 219.0 11.0 235 402-650 24-259 (825)
144 KOG4283 Transcription-coupled 99.9 7.3E-21 1.6E-25 179.7 25.7 225 402-662 39-279 (397)
145 KOG0650 WD40 repeat nucleolar 99.9 1.6E-21 3.5E-26 201.5 22.6 238 399-661 393-639 (733)
146 KOG0321 WD40 repeat-containing 99.9 2.2E-21 4.8E-26 202.3 22.8 286 354-662 61-394 (720)
147 KOG2445 Nuclear pore complex c 99.9 2.3E-20 5E-25 177.9 24.8 255 401-659 8-318 (361)
148 KOG0269 WD40 repeat-containing 99.9 1.1E-21 2.3E-26 209.3 15.7 249 346-619 89-344 (839)
149 KOG0270 WD40 repeat-containing 99.9 1.2E-20 2.6E-25 188.9 22.3 252 408-665 175-455 (463)
150 KOG2445 Nuclear pore complex c 99.9 4.8E-20 1E-24 175.7 24.6 263 342-626 11-332 (361)
151 KOG0267 Microtubule severing p 99.9 3.3E-22 7.2E-27 211.3 10.7 232 343-606 27-259 (825)
152 KOG0269 WD40 repeat-containing 99.9 4.4E-21 9.6E-26 204.6 19.2 296 344-661 39-342 (839)
153 KOG1538 Uncharacterized conser 99.9 6.4E-20 1.4E-24 191.5 26.5 462 408-1011 14-503 (1081)
154 KOG0307 Vesicle coat complex C 99.9 4.3E-21 9.4E-26 214.6 16.1 297 347-662 9-330 (1049)
155 KOG1009 Chromatin assembly com 99.9 1.5E-19 3.2E-24 179.1 24.2 305 341-661 10-374 (434)
156 COG2319 FOG: WD40 repeat [Gene 99.8 5.4E-17 1.2E-21 185.9 47.8 372 447-946 61-443 (466)
157 KOG0321 WD40 repeat-containing 99.8 1.4E-19 3.1E-24 188.9 22.6 312 549-947 62-393 (720)
158 COG2319 FOG: WD40 repeat [Gene 99.8 1.4E-16 2.9E-21 182.6 49.5 290 339-661 60-361 (466)
159 KOG2919 Guanine nucleotide-bin 99.8 5.8E-19 1.3E-23 169.3 22.8 287 347-650 52-361 (406)
160 KOG4497 Uncharacterized conser 99.8 9.4E-19 2E-23 168.1 24.2 405 412-937 14-424 (447)
161 KOG4378 Nuclear protein COP1 [ 99.8 2.6E-19 5.6E-24 181.0 21.1 212 769-1012 84-303 (673)
162 KOG1034 Transcriptional repres 99.8 4E-19 8.6E-24 171.0 21.1 289 343-659 37-383 (385)
163 KOG0302 Ribosome Assembly prot 99.8 3.7E-19 8E-24 174.3 20.6 264 333-607 140-431 (440)
164 KOG1524 WD40 repeat-containing 99.8 3.7E-18 8E-23 174.4 27.7 232 405-654 13-250 (737)
165 KOG4328 WD40 protein [Function 99.8 1.1E-18 2.3E-23 175.6 23.1 305 487-903 179-495 (498)
166 KOG4378 Nuclear protein COP1 [ 99.8 8.5E-19 1.9E-23 177.3 21.8 289 366-689 11-305 (673)
167 KOG1912 WD40 repeat protein [G 99.8 8.9E-18 1.9E-22 179.1 30.3 592 343-1002 14-709 (1062)
168 KOG1034 Transcriptional repres 99.8 1.9E-18 4.1E-23 166.4 21.7 251 400-661 32-339 (385)
169 KOG0270 WD40 repeat-containing 99.8 7.7E-19 1.7E-23 176.1 18.6 263 345-620 174-454 (463)
170 KOG0302 Ribosome Assembly prot 99.8 2.2E-18 4.8E-23 168.9 21.2 247 402-656 147-435 (440)
171 KOG0303 Actin-binding protein 99.8 1.9E-18 4.1E-23 170.3 20.7 236 400-640 75-320 (472)
172 KOG0303 Actin-binding protein 99.8 3E-18 6.6E-23 168.9 22.1 219 437-662 67-297 (472)
173 KOG2919 Guanine nucleotide-bin 99.8 1.2E-18 2.7E-23 167.1 18.3 284 587-936 51-361 (406)
174 KOG1009 Chromatin assembly com 99.8 1.1E-17 2.4E-22 166.0 24.0 158 406-571 13-194 (434)
175 KOG1524 WD40 repeat-containing 99.8 4.8E-17 1E-21 166.4 26.9 272 342-656 12-283 (737)
176 KOG0644 Uncharacterized conser 99.8 6.9E-19 1.5E-23 188.9 13.0 279 339-661 185-470 (1113)
177 KOG0642 Cell-cycle nuclear pro 99.8 1.8E-18 3.9E-23 178.8 15.0 265 340-625 289-571 (577)
178 KOG0307 Vesicle coat complex C 99.8 2.3E-18 5.1E-23 193.0 16.2 261 337-618 57-330 (1049)
179 KOG1310 WD40 repeat protein [G 99.8 5.6E-17 1.2E-21 166.4 23.6 240 400-666 44-310 (758)
180 KOG4497 Uncharacterized conser 99.8 8.9E-17 1.9E-21 154.7 23.4 337 543-984 13-423 (447)
181 KOG1334 WD40 repeat protein [G 99.8 3.6E-18 7.7E-23 173.1 14.5 293 342-661 140-468 (559)
182 PRK11028 6-phosphogluconolacto 99.8 8.3E-16 1.8E-20 167.0 33.9 217 767-1010 82-327 (330)
183 KOG4227 WD40 repeat protein [G 99.8 3.7E-17 8.1E-22 160.5 20.4 295 340-659 52-387 (609)
184 KOG0322 G-protein beta subunit 99.8 1.6E-17 3.5E-22 155.2 16.4 283 342-658 12-322 (323)
185 KOG0322 G-protein beta subunit 99.8 2.6E-17 5.6E-22 153.8 17.7 308 530-944 6-322 (323)
186 KOG1188 WD40 repeat protein [G 99.8 2.3E-17 4.9E-22 160.2 16.3 292 467-793 42-345 (376)
187 KOG0649 WD40 repeat protein [G 99.8 7.8E-16 1.7E-20 142.0 25.2 280 346-656 12-313 (325)
188 KOG1912 WD40 repeat protein [G 99.7 2E-15 4.4E-20 161.3 31.4 496 406-1011 15-572 (1062)
189 KOG1587 Cytoplasmic dynein int 99.7 4.3E-16 9.3E-21 171.1 26.3 269 327-616 226-517 (555)
190 KOG0642 Cell-cycle nuclear pro 99.7 2.4E-17 5.1E-22 170.6 15.4 251 401-661 289-563 (577)
191 KOG2041 WD40 repeat protein [G 99.7 2.6E-14 5.7E-19 151.3 36.3 550 342-1000 12-627 (1189)
192 KOG1188 WD40 repeat protein [G 99.7 2.4E-16 5.2E-21 153.1 19.3 273 359-659 42-346 (376)
193 KOG0290 Conserved WD40 repeat- 99.7 2E-15 4.3E-20 143.2 24.4 287 335-650 35-357 (364)
194 PF02239 Cytochrom_D1: Cytochr 99.7 1.1E-14 2.4E-19 156.6 32.1 320 562-1002 14-357 (369)
195 KOG1240 Protein kinase contain 99.7 2.8E-15 6.1E-20 168.6 28.1 254 402-662 1044-1337(1431)
196 KOG1587 Cytoplasmic dynein int 99.7 2.3E-15 5E-20 165.4 27.1 251 405-661 241-518 (555)
197 KOG1517 Guanine nucleotide bin 99.7 9.4E-16 2E-20 169.4 23.7 305 452-906 1065-1384(1387)
198 PRK11028 6-phosphogluconolacto 99.7 1.7E-14 3.7E-19 156.7 33.3 271 359-659 4-304 (330)
199 KOG0649 WD40 repeat protein [G 99.7 1.3E-15 2.9E-20 140.5 20.4 225 766-1010 12-254 (325)
200 KOG1007 WD repeat protein TSSC 99.7 6.1E-16 1.3E-20 146.5 18.3 206 343-571 122-360 (370)
201 KOG4227 WD40 repeat protein [G 99.7 3E-15 6.6E-20 147.2 23.5 298 533-945 51-387 (609)
202 PF02239 Cytochrom_D1: Cytochr 99.7 2.1E-14 4.5E-19 154.5 31.8 329 511-954 9-356 (369)
203 KOG1007 WD repeat protein TSSC 99.7 2.6E-15 5.6E-20 142.3 21.5 256 341-615 60-361 (370)
204 KOG0644 Uncharacterized conser 99.7 7.7E-17 1.7E-21 173.4 11.9 291 529-950 181-473 (1113)
205 PRK01742 tolB translocation pr 99.7 3.9E-15 8.5E-20 166.5 23.2 235 366-640 183-426 (429)
206 KOG1517 Guanine nucleotide bin 99.7 1E-14 2.2E-19 161.4 24.7 302 587-995 1066-1384(1387)
207 KOG2110 Uncharacterized conser 99.7 1.7E-13 3.7E-18 135.1 30.4 239 406-661 5-250 (391)
208 KOG1240 Protein kinase contain 99.7 1.1E-14 2.4E-19 163.9 23.2 177 480-661 1034-1227(1431)
209 KOG2110 Uncharacterized conser 99.6 6.8E-14 1.5E-18 137.9 25.2 159 830-995 86-251 (391)
210 KOG1523 Actin-related protein 99.6 2.8E-14 6E-19 137.8 21.9 237 343-606 9-269 (361)
211 KOG1523 Actin-related protein 99.6 6.5E-14 1.4E-18 135.2 23.0 233 405-648 9-268 (361)
212 KOG0290 Conserved WD40 repeat- 99.6 3.7E-14 8E-19 134.7 20.5 250 341-611 93-361 (364)
213 KOG0771 Prolactin regulatory e 99.6 5.6E-15 1.2E-19 148.4 15.9 196 348-571 148-353 (398)
214 KOG1334 WD40 repeat protein [G 99.6 4.7E-15 1E-19 150.7 15.3 254 401-661 137-426 (559)
215 KOG2111 Uncharacterized conser 99.6 1.2E-12 2.5E-17 126.7 29.8 240 408-661 7-258 (346)
216 PRK01742 tolB translocation pr 99.6 9E-14 2E-18 155.6 25.8 235 563-926 183-426 (429)
217 KOG2041 WD40 repeat protein [G 99.6 1.2E-12 2.7E-17 138.9 31.9 490 406-1010 14-597 (1189)
218 PF04762 IKI3: IKI3 family; I 99.6 1E-09 2.2E-14 131.4 60.4 490 405-992 74-639 (928)
219 KOG0771 Prolactin regulatory e 99.6 1.5E-14 3.4E-19 145.3 15.8 197 410-616 148-355 (398)
220 KOG2139 WD40 repeat protein [G 99.6 9.2E-13 2E-17 129.3 26.4 282 345-658 99-430 (445)
221 KOG2394 WD40 protein DMR-N9 [G 99.6 5.8E-14 1.2E-18 144.6 18.8 118 831-949 290-456 (636)
222 KOG1832 HIV-1 Vpr-binding prot 99.6 8.4E-15 1.8E-19 158.5 11.8 258 340-648 1096-1378(1516)
223 KOG1310 WD40 repeat protein [G 99.6 3E-14 6.5E-19 146.7 14.6 240 341-624 47-312 (758)
224 KOG2111 Uncharacterized conser 99.6 5.4E-12 1.2E-16 122.2 29.0 239 540-904 7-257 (346)
225 KOG2139 WD40 repeat protein [G 99.6 1.3E-12 2.9E-17 128.1 25.0 306 540-991 100-430 (445)
226 KOG2315 Predicted translation 99.6 3.7E-12 8.1E-17 132.8 29.5 335 538-946 34-391 (566)
227 PRK03629 tolB translocation pr 99.6 1.3E-12 2.7E-17 145.8 28.4 223 402-639 194-427 (429)
228 COG4946 Uncharacterized protei 99.6 4.3E-10 9.3E-15 114.6 43.0 404 327-892 61-507 (668)
229 KOG2321 WD40 repeat protein [G 99.6 7.1E-13 1.5E-17 137.7 23.5 285 336-659 43-343 (703)
230 KOG1272 WD40-repeat-containing 99.5 3E-14 6.5E-19 144.1 11.5 286 346-670 131-420 (545)
231 PRK05137 tolB translocation pr 99.5 2.9E-12 6.3E-17 144.1 28.1 223 402-640 197-433 (435)
232 PRK02889 tolB translocation pr 99.5 1.9E-12 4.2E-17 144.6 25.8 225 402-640 191-425 (427)
233 KOG1272 WD40-repeat-containing 99.5 5.8E-14 1.3E-18 142.0 12.1 232 407-658 130-361 (545)
234 PRK04922 tolB translocation pr 99.5 2.7E-12 5.8E-17 144.1 26.1 223 402-639 199-432 (433)
235 PRK03629 tolB translocation pr 99.5 2.3E-12 5.1E-17 143.7 24.5 224 339-595 193-427 (429)
236 KOG0974 WD-repeat protein WDR6 99.5 1.7E-10 3.8E-15 129.4 38.3 194 346-574 89-290 (967)
237 PF10282 Lactonase: Lactonase, 99.5 4.2E-10 9.2E-15 122.0 39.0 175 831-1010 143-345 (345)
238 KOG2394 WD40 protein DMR-N9 [G 99.5 3.3E-12 7.2E-17 131.8 20.8 251 346-638 125-383 (636)
239 COG5354 Uncharacterized protei 99.5 1.5E-11 3.2E-16 126.7 25.2 351 345-785 33-420 (561)
240 KOG0974 WD-repeat protein WDR6 99.5 6E-11 1.3E-15 132.9 32.2 281 343-661 6-290 (967)
241 PF10282 Lactonase: Lactonase, 99.5 3.6E-10 7.9E-15 122.5 37.0 300 518-923 13-345 (345)
242 PRK02889 tolB translocation pr 99.5 6.7E-12 1.4E-16 140.3 23.7 225 338-595 189-424 (427)
243 KOG2315 Predicted translation 99.5 3.1E-11 6.7E-16 126.0 26.1 278 344-661 34-392 (566)
244 PRK04922 tolB translocation pr 99.5 6.8E-12 1.5E-16 140.8 23.3 225 337-595 196-432 (433)
245 PF04762 IKI3: IKI3 family; I 99.4 8.4E-09 1.8E-13 123.6 49.8 450 407-948 22-567 (928)
246 KOG3881 Uncharacterized conser 99.4 1.3E-11 2.9E-16 122.9 21.5 272 344-640 55-342 (412)
247 TIGR02658 TTQ_MADH_Hv methylam 99.4 1.1E-09 2.3E-14 114.8 36.8 95 564-661 27-138 (352)
248 COG5354 Uncharacterized protei 99.4 1.9E-10 4.1E-15 118.7 30.3 372 521-981 15-417 (561)
249 PF08662 eIF2A: Eukaryotic tra 99.4 1.3E-11 2.8E-16 120.4 20.4 154 835-1001 9-187 (194)
250 PRK05137 tolB translocation pr 99.4 2.5E-11 5.4E-16 136.5 24.6 236 327-595 184-432 (435)
251 KOG3881 Uncharacterized conser 99.4 3.1E-11 6.7E-16 120.3 21.0 136 832-975 203-343 (412)
252 COG2706 3-carboxymuconate cycl 99.4 3.7E-09 7.9E-14 105.6 34.8 301 517-924 15-345 (346)
253 KOG1354 Serine/threonine prote 99.4 3.8E-11 8.2E-16 117.3 18.6 263 342-617 23-361 (433)
254 COG4946 Uncharacterized protei 99.4 8.6E-09 1.9E-13 105.3 35.9 143 830-981 358-506 (668)
255 PF08662 eIF2A: Eukaryotic tra 99.4 7.2E-11 1.6E-15 115.2 20.1 111 830-946 58-180 (194)
256 KOG2659 LisH motif-containing 99.4 7E-12 1.5E-16 118.0 12.1 171 3-182 24-204 (228)
257 KOG1354 Serine/threonine prote 99.4 1.4E-10 2.9E-15 113.5 21.2 250 406-662 25-362 (433)
258 TIGR02658 TTQ_MADH_Hv methylam 99.4 7.7E-09 1.7E-13 108.4 35.9 106 518-625 27-146 (352)
259 KOG2321 WD40 repeat protein [G 99.3 2.8E-10 6E-15 118.8 24.1 292 492-904 49-344 (703)
260 PRK00178 tolB translocation pr 99.3 4.2E-10 9.1E-15 127.1 28.2 224 402-640 194-428 (430)
261 KOG2314 Translation initiation 99.3 3.5E-10 7.7E-15 117.5 24.7 295 335-661 241-575 (698)
262 COG2706 3-carboxymuconate cycl 99.3 1.2E-08 2.5E-13 102.1 34.2 228 768-1011 92-345 (346)
263 PRK04792 tolB translocation pr 99.3 3.3E-10 7.1E-15 127.0 26.5 223 402-639 213-446 (448)
264 PRK01029 tolB translocation pr 99.3 2.8E-10 6E-15 126.4 25.4 216 765-1012 185-424 (428)
265 TIGR02800 propeller_TolB tol-p 99.3 3.1E-10 6.8E-15 128.2 26.4 210 402-624 185-405 (417)
266 KOG2314 Translation initiation 99.3 1.9E-09 4.1E-14 112.3 28.7 311 540-981 212-555 (698)
267 KOG1409 Uncharacterized conser 99.3 8.2E-11 1.8E-15 115.2 17.8 204 446-661 19-229 (404)
268 PRK01029 tolB translocation pr 99.3 6.3E-10 1.4E-14 123.5 25.5 224 343-596 183-425 (428)
269 PRK00178 tolB translocation pr 99.3 6.5E-10 1.4E-14 125.6 25.0 226 337-595 191-427 (430)
270 KOG1409 Uncharacterized conser 99.3 3.7E-10 8E-15 110.7 19.4 251 576-946 16-271 (404)
271 PRK04792 tolB translocation pr 99.3 4.2E-10 9.2E-15 126.1 22.9 224 339-595 212-446 (448)
272 TIGR02800 propeller_TolB tol-p 99.3 5.3E-10 1.2E-14 126.4 23.4 212 337-581 182-405 (417)
273 TIGR03300 assembly_YfgL outer 99.2 8.4E-09 1.8E-13 114.4 30.5 305 509-942 66-376 (377)
274 KOG4190 Uncharacterized conser 99.2 8.6E-11 1.9E-15 121.4 11.8 241 401-658 730-987 (1034)
275 KOG4547 WD40 repeat-containing 99.2 1.1E-09 2.4E-14 115.8 19.4 193 415-616 2-221 (541)
276 KOG4547 WD40 repeat-containing 99.2 1.6E-09 3.5E-14 114.5 20.2 201 774-993 3-221 (541)
277 TIGR03300 assembly_YfgL outer 99.2 3.2E-08 6.9E-13 109.8 31.4 184 467-662 67-262 (377)
278 KOG0280 Uncharacterized conser 99.1 1E-08 2.2E-13 98.7 20.6 246 406-660 69-334 (339)
279 KOG1064 RAVE (regulator of V-A 99.1 5.1E-10 1.1E-14 131.5 13.6 203 338-583 2202-2409(2439)
280 PLN02919 haloacid dehalogenase 99.1 1.6E-07 3.5E-12 115.3 35.6 74 875-949 806-892 (1057)
281 KOG0280 Uncharacterized conser 99.1 1.4E-08 3.1E-13 97.7 19.7 197 344-557 69-274 (339)
282 KOG1064 RAVE (regulator of V-A 99.1 7.2E-10 1.6E-14 130.2 11.9 201 402-625 2204-2408(2439)
283 KOG1897 Damage-specific DNA bi 99.0 0.00015 3.3E-09 82.3 49.8 602 338-991 300-941 (1096)
284 PLN02919 haloacid dehalogenase 99.0 3.2E-07 7E-12 112.6 31.2 246 410-662 571-891 (1057)
285 KOG0309 Conserved WD40 repeat- 99.0 6.8E-09 1.5E-13 111.7 14.4 270 337-616 17-340 (1081)
286 PRK04043 tolB translocation pr 98.9 4.5E-07 9.9E-12 100.0 25.7 206 766-1009 189-418 (419)
287 KOG4190 Uncharacterized conser 98.9 8.2E-09 1.8E-13 107.1 11.1 289 341-655 732-1032(1034)
288 KOG3617 WD40 and TPR repeat-co 98.9 3.8E-07 8.1E-12 100.0 23.6 219 410-655 19-255 (1416)
289 PRK04043 tolB translocation pr 98.9 6.5E-07 1.4E-11 98.8 26.3 197 345-573 188-401 (419)
290 PRK11138 outer membrane biogen 98.9 1.7E-06 3.8E-11 96.2 30.1 308 509-944 70-393 (394)
291 PF07433 DUF1513: Protein of u 98.9 1.8E-06 3.9E-11 87.1 26.2 235 346-611 6-281 (305)
292 PF07433 DUF1513: Protein of u 98.8 1.2E-06 2.7E-11 88.3 23.9 171 836-1010 55-265 (305)
293 KOG1832 HIV-1 Vpr-binding prot 98.8 2.9E-09 6.3E-14 116.5 5.3 217 400-646 1095-1318(1516)
294 KOG3914 WD repeat protein WDR4 98.8 4.5E-08 9.7E-13 98.9 12.9 163 346-534 64-231 (390)
295 PRK11138 outer membrane biogen 98.8 7.7E-06 1.7E-10 91.1 31.2 188 467-662 71-277 (394)
296 PF15492 Nbas_N: Neuroblastoma 98.8 6.3E-06 1.4E-10 80.4 25.5 231 412-661 3-261 (282)
297 KOG3914 WD repeat protein WDR4 98.8 6.7E-08 1.4E-12 97.7 11.6 161 833-1002 64-233 (390)
298 KOG4532 WD40-like repeat conta 98.7 1E-06 2.2E-11 83.9 18.6 192 359-557 86-321 (344)
299 PF15492 Nbas_N: Neuroblastoma 98.7 6.1E-06 1.3E-10 80.5 24.2 260 591-913 3-269 (282)
300 COG5170 CDC55 Serine/threonine 98.7 2.4E-07 5.2E-12 89.8 14.5 211 450-668 25-318 (460)
301 COG5170 CDC55 Serine/threonine 98.7 3.2E-07 6.9E-12 89.0 15.0 247 405-659 25-367 (460)
302 KOG4649 PQQ (pyrrolo-quinoline 98.7 9E-05 2E-09 70.8 29.8 136 509-653 24-159 (354)
303 KOG4714 Nucleoporin [Nuclear s 98.7 5.1E-07 1.1E-11 85.6 14.5 206 346-573 38-255 (319)
304 KOG4532 WD40-like repeat conta 98.7 3.5E-06 7.5E-11 80.4 19.7 231 417-658 83-330 (344)
305 PF08450 SGL: SMP-30/Gluconola 98.7 2.5E-05 5.4E-10 80.7 28.4 208 769-1011 4-233 (246)
306 KOG0882 Cyclophilin-related pe 98.7 7.8E-07 1.7E-11 91.0 16.0 256 342-624 7-314 (558)
307 KOG0309 Conserved WD40 repeat- 98.6 1.6E-07 3.5E-12 101.4 10.9 222 327-573 95-340 (1081)
308 KOG1645 RING-finger-containing 98.6 4.3E-06 9.3E-11 84.6 20.2 248 401-659 188-461 (463)
309 PF08450 SGL: SMP-30/Gluconola 98.6 2.2E-05 4.9E-10 81.1 26.4 218 411-648 4-244 (246)
310 PF13360 PQQ_2: PQQ-like domai 98.6 4.5E-05 9.8E-10 78.6 28.4 96 563-662 2-97 (238)
311 KOG1920 IkappaB kinase complex 98.6 0.00058 1.2E-08 79.7 37.5 247 406-664 68-327 (1265)
312 KOG0396 Uncharacterized conser 98.6 8.7E-07 1.9E-11 88.8 13.0 172 5-189 115-298 (389)
313 PF00400 WD40: WD domain, G-be 98.5 2.4E-07 5.2E-12 63.6 6.3 39 905-943 1-39 (39)
314 PF00930 DPPIV_N: Dipeptidyl p 98.5 5E-05 1.1E-09 82.9 27.7 302 594-981 1-345 (353)
315 PRK02888 nitrous-oxide reducta 98.5 1.8E-05 4E-10 87.6 23.5 104 839-946 284-405 (635)
316 PF13360 PQQ_2: PQQ-like domai 98.5 1.9E-05 4.1E-10 81.4 22.4 220 427-664 2-235 (238)
317 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00044 9.5E-09 66.3 28.6 145 352-524 18-163 (354)
318 PF06433 Me-amine-dh_H: Methyl 98.5 0.00012 2.7E-09 75.0 26.8 137 518-661 17-167 (342)
319 KOG1920 IkappaB kinase complex 98.5 7.9E-05 1.7E-09 86.5 27.5 123 834-958 198-335 (1265)
320 KOG2695 WD40 repeat protein [G 98.5 4.2E-07 9.1E-12 89.7 8.0 140 830-972 251-401 (425)
321 PRK02888 nitrous-oxide reducta 98.5 8.2E-05 1.8E-09 82.6 26.5 102 831-934 320-450 (635)
322 KOG2695 WD40 repeat protein [G 98.4 6E-07 1.3E-11 88.7 8.5 164 351-538 218-388 (425)
323 KOG3617 WD40 and TPR repeat-co 98.4 5.3E-06 1.2E-10 91.3 16.3 336 542-895 19-377 (1416)
324 PF10607 CLTH: CTLH/CRA C-term 98.4 9.5E-07 2.1E-11 82.3 8.8 133 38-181 5-140 (145)
325 KOG4714 Nucleoporin [Nuclear s 98.4 7.9E-06 1.7E-10 77.8 14.6 161 343-527 88-255 (319)
326 KOG0882 Cyclophilin-related pe 98.4 9.2E-06 2E-10 83.4 15.9 252 405-667 8-312 (558)
327 PF00930 DPPIV_N: Dipeptidyl p 98.4 0.00019 4.2E-09 78.3 27.6 296 353-695 1-345 (353)
328 PF06433 Me-amine-dh_H: Methyl 98.4 0.00056 1.2E-08 70.3 28.5 78 918-1002 240-330 (342)
329 KOG3621 WD40 repeat-containing 98.4 0.00011 2.4E-09 80.5 23.6 283 343-662 32-356 (726)
330 PF00400 WD40: WD domain, G-be 98.3 2E-06 4.3E-11 59.0 6.6 39 862-901 1-39 (39)
331 KOG1897 Damage-specific DNA bi 98.3 0.017 3.7E-07 66.4 50.6 563 347-995 260-903 (1096)
332 cd00216 PQQ_DH Dehydrogenases 98.3 0.00079 1.7E-08 76.8 29.7 127 845-983 303-457 (488)
333 KOG2066 Vacuolar assembly/sort 98.3 2.6E-05 5.7E-10 86.3 16.5 182 343-572 38-233 (846)
334 KOG2114 Vacuolar assembly/sort 98.3 0.00031 6.8E-09 78.6 24.7 117 830-948 124-246 (933)
335 PF08513 LisH: LisH; InterPro 98.3 1.5E-06 3.3E-11 52.5 3.9 27 6-32 1-27 (27)
336 KOG2114 Vacuolar assembly/sort 98.2 0.00021 4.5E-09 80.0 22.7 203 351-584 30-256 (933)
337 cd00216 PQQ_DH Dehydrogenases 98.2 0.0019 4E-08 73.8 31.4 109 510-625 63-193 (488)
338 KOG2066 Vacuolar assembly/sort 98.2 4.3E-05 9.2E-10 84.7 16.6 185 767-992 42-233 (846)
339 KOG1645 RING-finger-containing 98.2 0.00014 3.1E-09 74.0 17.9 245 341-615 190-461 (463)
340 PF14583 Pectate_lyase22: Olig 98.1 0.0067 1.4E-07 63.9 30.2 103 524-628 16-123 (386)
341 KOG1275 PAB-dependent poly(A) 98.1 8.8E-05 1.9E-09 83.2 15.6 183 467-658 149-341 (1118)
342 PF11768 DUF3312: Protein of u 98.1 0.0018 3.9E-08 70.4 24.9 112 832-946 206-330 (545)
343 PF04053 Coatomer_WDAD: Coatom 98.1 0.0013 2.7E-08 72.6 24.6 224 402-660 28-263 (443)
344 smart00667 LisH Lissencephaly 98.0 8.5E-06 1.8E-10 53.8 4.3 32 4-35 2-33 (34)
345 PF11768 DUF3312: Protein of u 98.0 5.8E-05 1.3E-09 81.5 12.8 84 333-438 248-331 (545)
346 KOG3621 WD40 repeat-containing 98.0 0.00033 7.1E-09 76.9 18.5 107 765-892 77-188 (726)
347 PF14583 Pectate_lyase22: Olig 98.0 0.019 4E-07 60.7 30.3 278 351-658 42-380 (386)
348 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.034 7.3E-07 63.8 35.2 110 510-625 71-199 (527)
349 smart00668 CTLH C-terminal to 97.9 7.1E-06 1.5E-10 62.2 3.0 52 38-90 5-56 (58)
350 PF02897 Peptidase_S9_N: Proly 97.9 0.0074 1.6E-07 68.0 28.5 252 346-621 125-410 (414)
351 KOG1275 PAB-dependent poly(A) 97.9 0.00021 4.5E-09 80.3 15.1 181 417-613 146-340 (1118)
352 PF06977 SdiA-regulated: SdiA- 97.9 0.0026 5.7E-08 63.9 21.8 190 344-556 21-239 (248)
353 COG0823 TolB Periplasmic compo 97.9 0.00036 7.7E-09 76.6 17.0 170 833-1012 239-423 (425)
354 KOG1008 Uncharacterized conser 97.9 5.8E-06 1.3E-10 88.7 2.5 203 345-572 57-275 (783)
355 PF08596 Lgl_C: Lethal giant l 97.8 0.0058 1.3E-07 66.5 24.4 252 346-604 3-325 (395)
356 PF04841 Vps16_N: Vps16, N-ter 97.8 0.031 6.6E-07 62.0 30.5 138 838-1002 185-324 (410)
357 PF04053 Coatomer_WDAD: Coatom 97.8 0.001 2.2E-08 73.3 18.0 145 830-994 31-175 (443)
358 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.8 0.058 1.3E-06 61.9 32.4 110 550-666 69-196 (527)
359 PF08596 Lgl_C: Lethal giant l 97.7 0.013 2.8E-07 63.9 25.0 226 766-1001 3-299 (395)
360 PF00780 CNH: CNH domain; Int 97.7 0.093 2E-06 55.2 30.1 215 766-1008 37-271 (275)
361 COG0823 TolB Periplasmic compo 97.6 0.0037 8E-08 68.8 19.1 187 343-557 191-388 (425)
362 COG3490 Uncharacterized protei 97.6 0.011 2.5E-07 57.9 19.7 238 345-613 68-346 (366)
363 PF06977 SdiA-regulated: SdiA- 97.6 0.042 9.1E-07 55.4 24.5 202 446-656 16-247 (248)
364 KOG2817 Predicted E3 ubiquitin 97.5 0.00064 1.4E-08 69.9 10.9 113 5-118 116-240 (394)
365 COG3391 Uncharacterized conser 97.5 0.091 2E-06 57.9 28.2 209 408-625 75-293 (381)
366 PF04841 Vps16_N: Vps16, N-ter 97.4 0.16 3.5E-06 56.3 28.8 195 368-597 62-271 (410)
367 PF02897 Peptidase_S9_N: Proly 97.4 0.074 1.6E-06 59.9 27.0 244 408-662 125-407 (414)
368 COG3391 Uncharacterized conser 97.4 0.14 3E-06 56.4 28.2 241 408-661 32-285 (381)
369 PF08553 VID27: VID27 cytoplas 97.4 0.048 1E-06 63.8 24.7 141 418-571 493-646 (794)
370 KOG1008 Uncharacterized conser 97.4 9.6E-05 2.1E-09 79.7 2.5 158 496-658 58-224 (783)
371 PRK13616 lipoprotein LpqB; Pro 97.3 0.0031 6.8E-08 72.5 14.7 152 832-992 350-527 (591)
372 KOG4640 Anaphase-promoting com 97.3 0.001 2.2E-08 72.3 9.2 92 874-972 22-114 (665)
373 COG3490 Uncharacterized protei 97.2 0.25 5.5E-06 48.9 24.0 231 411-657 72-346 (366)
374 PF00780 CNH: CNH domain; Int 97.2 0.16 3.5E-06 53.4 25.5 230 355-626 6-266 (275)
375 KOG4640 Anaphase-promoting com 97.2 0.0014 3.1E-08 71.2 9.2 95 344-461 20-115 (665)
376 COG3386 Gluconolactonase [Carb 97.2 0.13 2.8E-06 54.0 23.3 222 351-604 31-274 (307)
377 smart00320 WD40 WD40 repeats. 97.2 0.0012 2.5E-08 44.6 5.7 39 905-943 2-40 (40)
378 PF05096 Glu_cyclase_2: Glutam 97.1 0.12 2.6E-06 51.8 21.1 163 831-1000 44-211 (264)
379 PF14870 PSII_BNR: Photosynthe 97.1 0.45 9.8E-06 49.6 28.5 153 830-989 143-301 (302)
380 PF14655 RAB3GAP2_N: Rab3 GTPa 97.1 0.11 2.4E-06 56.5 22.3 82 540-625 309-408 (415)
381 PF03178 CPSF_A: CPSF A subuni 97.0 0.08 1.7E-06 57.1 21.2 216 367-611 2-261 (321)
382 PF03178 CPSF_A: CPSF A subuni 97.0 0.055 1.2E-06 58.3 19.8 139 843-992 42-202 (321)
383 PF14783 BBS2_Mid: Ciliary BBS 97.0 0.044 9.5E-07 46.4 14.3 101 875-988 2-110 (111)
384 PF14655 RAB3GAP2_N: Rab3 GTPa 97.0 0.21 4.5E-06 54.4 23.4 83 830-912 306-407 (415)
385 COG3386 Gluconolactonase [Carb 97.0 0.31 6.8E-06 51.1 23.9 106 767-891 165-273 (307)
386 PRK13616 lipoprotein LpqB; Pro 97.0 0.05 1.1E-06 62.8 19.7 182 765-984 350-560 (591)
387 KOG2395 Protein involved in va 96.9 0.025 5.3E-07 60.6 14.8 145 416-572 343-500 (644)
388 PF14727 PHTB1_N: PTHB1 N-term 96.9 0.93 2E-05 49.6 31.5 278 353-661 33-362 (418)
389 PF08553 VID27: VID27 cytoplas 96.8 0.034 7.3E-07 65.0 16.3 145 463-614 492-646 (794)
390 cd08044 TAF5_NTD2 TAF5_NTD2 is 96.8 0.0013 2.8E-08 59.4 4.0 78 72-149 29-113 (133)
391 PF14783 BBS2_Mid: Ciliary BBS 96.8 0.044 9.6E-07 46.4 12.6 102 347-478 2-109 (111)
392 KOG4441 Proteins containing BT 96.8 0.14 3E-06 59.3 21.2 235 415-661 282-548 (571)
393 PF04494 TFIID_90kDa: WD40 ass 96.7 0.0013 2.7E-08 60.3 3.4 78 72-149 40-124 (142)
394 smart00320 WD40 WD40 repeats. 96.7 0.0052 1.1E-07 41.2 5.6 39 862-901 2-40 (40)
395 PRK10115 protease 2; Provision 96.6 2.5 5.4E-05 50.5 31.2 243 407-661 127-396 (686)
396 PF10647 Gmad1: Lipoprotein Lp 96.5 0.15 3.2E-06 52.4 17.5 147 832-981 24-183 (253)
397 PF05694 SBP56: 56kDa selenium 96.5 0.18 4E-06 53.8 17.8 241 508-784 87-393 (461)
398 PF07995 GSDH: Glucose / Sorbo 96.4 1.7 3.8E-05 46.8 28.7 58 597-654 271-330 (331)
399 KOG4499 Ca2+-binding protein R 96.4 0.73 1.6E-05 44.4 19.0 101 768-882 161-263 (310)
400 TIGR03118 PEPCTERM_chp_1 conse 96.3 1.4 3.1E-05 44.7 22.5 252 631-925 24-307 (336)
401 PF05694 SBP56: 56kDa selenium 96.2 0.35 7.7E-06 51.7 18.1 236 355-604 86-392 (461)
402 TIGR03118 PEPCTERM_chp_1 conse 96.2 1.7 3.7E-05 44.2 23.1 229 453-687 24-307 (336)
403 KOG2395 Protein involved in va 96.2 0.12 2.6E-06 55.5 14.3 139 510-658 348-499 (644)
404 PF14727 PHTB1_N: PTHB1 N-term 96.0 2.1 4.7E-05 46.9 23.5 198 726-947 145-362 (418)
405 PF12894 Apc4_WD40: Anaphase-p 96.0 0.017 3.8E-07 40.6 5.0 34 344-379 11-44 (47)
406 KOG2444 WD40 repeat protein [G 96.0 0.02 4.3E-07 54.8 6.7 104 843-946 70-178 (238)
407 KOG2079 Vacuolar assembly/sort 95.9 0.08 1.7E-06 61.8 12.6 103 417-525 98-202 (1206)
408 KOG2079 Vacuolar assembly/sort 95.9 0.023 5.1E-07 66.0 8.3 101 841-944 97-202 (1206)
409 PF12894 Apc4_WD40: Anaphase-p 95.9 0.03 6.5E-07 39.4 5.7 33 406-439 11-43 (47)
410 PF05096 Glu_cyclase_2: Glutam 95.8 2.5 5.3E-05 42.7 22.1 191 764-982 44-249 (264)
411 PF10647 Gmad1: Lipoprotein Lp 95.8 1.7 3.7E-05 44.7 20.7 150 346-517 25-186 (253)
412 PHA02713 hypothetical protein; 95.7 0.54 1.2E-05 54.7 18.9 152 507-661 351-535 (557)
413 PF15390 DUF4613: Domain of un 95.7 4.6 0.0001 44.9 27.3 115 537-659 55-186 (671)
414 PRK10115 protease 2; Provision 95.6 7.2 0.00016 46.7 34.8 241 346-618 128-397 (686)
415 PRK13684 Ycf48-like protein; P 95.6 4.2 9.1E-05 43.9 30.5 154 831-991 172-330 (334)
416 KOG4441 Proteins containing BT 95.5 2.6 5.6E-05 49.0 23.2 230 359-618 287-549 (571)
417 KOG4499 Ca2+-binding protein R 95.5 1.3 2.7E-05 42.9 16.6 143 451-603 108-272 (310)
418 PF12234 Rav1p_C: RAVE protein 95.5 0.53 1.1E-05 53.9 16.8 114 873-991 30-155 (631)
419 COG3204 Uncharacterized protei 95.5 1.7 3.7E-05 43.8 18.0 167 830-1000 84-270 (316)
420 PHA02713 hypothetical protein; 95.4 0.95 2.1E-05 52.7 19.5 192 417-620 303-538 (557)
421 TIGR03074 PQQ_membr_DH membran 95.4 8.4 0.00018 46.3 39.4 157 509-665 261-483 (764)
422 TIGR03074 PQQ_membr_DH membran 95.4 3.1 6.7E-05 49.8 23.5 157 467-624 262-486 (764)
423 KOG3630 Nuclear pore complex, 95.4 0.14 3.1E-06 60.1 11.8 147 831-981 100-261 (1405)
424 KOG2280 Vacuolar assembly/sort 95.3 3.1 6.7E-05 47.5 21.2 221 345-597 44-271 (829)
425 KOG1898 Splicing factor 3b, su 95.2 9.3 0.0002 45.6 35.0 103 838-945 940-1048(1205)
426 COG3204 Uncharacterized protei 95.0 4.5 9.8E-05 40.9 21.2 119 537-659 84-210 (316)
427 COG4590 ABC-type uncharacteriz 94.9 0.53 1.1E-05 49.7 13.4 163 830-1000 219-394 (733)
428 PF02333 Phytase: Phytase; In 94.7 7.6 0.00016 41.8 21.9 188 467-661 70-292 (381)
429 KOG2444 WD40 repeat protein [G 94.7 0.11 2.4E-06 49.9 7.1 100 359-481 72-175 (238)
430 COG3292 Predicted periplasmic 94.6 9.1 0.0002 42.5 21.9 276 342-655 162-443 (671)
431 KOG2377 Uncharacterized conser 94.5 2.6 5.5E-05 45.0 17.1 116 343-478 65-180 (657)
432 PHA03098 kelch-like protein; P 94.3 1.8 3.8E-05 50.7 18.1 147 840-996 340-515 (534)
433 PLN00033 photosystem II stabil 94.1 5.3 0.00012 43.9 19.7 146 834-989 241-396 (398)
434 TIGR02604 Piru_Ver_Nterm putat 94.0 1.6 3.4E-05 48.0 15.9 140 832-981 14-201 (367)
435 KOG1898 Splicing factor 3b, su 94.0 18 0.00039 43.4 32.9 70 587-656 584-668 (1205)
436 PF14870 PSII_BNR: Photosynthe 93.9 9.7 0.00021 39.9 31.8 283 341-656 13-301 (302)
437 PF12234 Rav1p_C: RAVE protein 93.8 1.5 3.3E-05 50.3 15.2 111 453-571 31-155 (631)
438 PHA03098 kelch-like protein; P 93.7 3.4 7.3E-05 48.3 18.9 152 507-661 342-513 (534)
439 KOG3630 Nuclear pore complex, 93.6 1.2 2.6E-05 52.9 14.1 153 765-933 101-261 (1405)
440 KOG4659 Uncharacterized conser 93.5 24 0.00052 43.3 30.7 26 763-788 660-685 (1899)
441 KOG1916 Nuclear protein, conta 93.4 0.083 1.8E-06 60.3 4.5 132 834-998 186-329 (1283)
442 PF10168 Nup88: Nuclear pore c 93.2 15 0.00034 43.7 22.6 96 406-527 84-180 (717)
443 PF14761 HPS3_N: Hermansky-Pud 92.6 5.7 0.00012 38.5 14.7 153 835-992 21-214 (215)
444 PF15390 DUF4613: Domain of un 92.5 6.8 0.00015 43.6 16.8 116 830-947 55-188 (671)
445 PRK13684 Ycf48-like protein; P 92.4 18 0.00039 39.0 30.3 278 344-657 45-329 (334)
446 PF13449 Phytase-like: Esteras 92.2 8.4 0.00018 41.4 17.6 150 830-981 18-232 (326)
447 PF10313 DUF2415: Uncharacteri 92.1 0.47 1E-05 32.3 4.9 32 345-376 1-34 (43)
448 TIGR02604 Piru_Ver_Nterm putat 92.1 3.4 7.3E-05 45.4 14.7 108 345-471 14-142 (367)
449 PF08728 CRT10: CRT10; InterP 92.1 10 0.00022 44.2 18.6 115 408-525 102-245 (717)
450 COG3823 Glutamine cyclotransfe 92.0 5.3 0.00012 38.1 13.3 154 842-1000 55-212 (262)
451 KOG2280 Vacuolar assembly/sort 91.7 7.8 0.00017 44.4 16.5 200 427-640 63-270 (829)
452 COG3292 Predicted periplasmic 91.7 26 0.00056 39.1 23.6 137 405-553 163-304 (671)
453 COG4257 Vgb Streptogramin lyas 91.7 16 0.00034 36.7 20.8 239 719-995 66-308 (353)
454 PF07995 GSDH: Glucose / Sorbo 91.6 22 0.00048 38.3 26.9 68 830-898 251-330 (331)
455 PF07569 Hira: TUP1-like enhan 91.6 0.87 1.9E-05 45.3 8.5 75 923-997 18-100 (219)
456 KOG1916 Nuclear protein, conta 91.1 0.51 1.1E-05 54.3 6.9 114 412-531 189-328 (1283)
457 PF10433 MMS1_N: Mono-function 90.8 37 0.0008 39.3 32.9 391 350-882 49-503 (504)
458 PF10313 DUF2415: Uncharacteri 90.8 1 2.2E-05 30.8 5.4 32 873-904 1-34 (43)
459 PHA02790 Kelch-like protein; P 90.7 14 0.0003 42.3 18.4 148 507-661 318-472 (480)
460 PF14781 BBS2_N: Ciliary BBSom 90.6 12 0.00026 33.3 13.3 112 879-1000 5-133 (136)
461 KOG3616 Selective LIM binding 90.4 21 0.00045 40.8 18.0 93 857-955 323-415 (1636)
462 PF10168 Nup88: Nuclear pore c 90.3 12 0.00025 44.7 17.4 31 830-860 83-113 (717)
463 PF12657 TFIIIC_delta: Transcr 90.2 2.1 4.6E-05 40.9 9.5 31 407-437 86-122 (173)
464 PHA02790 Kelch-like protein; P 90.2 12 0.00025 42.9 17.2 145 417-577 271-428 (480)
465 TIGR02276 beta_rpt_yvtn 40-res 90.0 1.2 2.6E-05 30.5 5.8 39 973-1011 1-42 (42)
466 COG5167 VID27 Protein involved 89.9 10 0.00022 41.3 14.6 152 454-615 469-632 (776)
467 PF10214 Rrn6: RNA polymerase 89.7 52 0.0011 40.3 22.9 159 830-993 78-277 (765)
468 COG3823 Glutamine cyclotransfe 89.6 5.5 0.00012 38.0 11.1 147 507-661 55-206 (262)
469 PF11725 AvrE: Pathogenicity f 89.6 45 0.00098 42.6 21.6 148 343-527 361-517 (1774)
470 COG5290 IkappaB kinase complex 89.5 6.1 0.00013 45.3 13.2 86 920-1012 251-346 (1243)
471 PF11725 AvrE: Pathogenicity f 89.1 79 0.0017 40.6 25.5 68 915-989 702-769 (1774)
472 PF14761 HPS3_N: Hermansky-Pud 88.3 26 0.00057 34.1 16.3 49 598-649 29-79 (215)
473 PF09862 DUF2089: Protein of u 88.2 3.7 8E-05 35.2 8.3 79 2-98 32-113 (113)
474 PF10214 Rrn6: RNA polymerase 88.0 30 0.00066 42.2 19.4 141 871-1012 78-256 (765)
475 COG1520 FOG: WD40-like repeat 87.8 48 0.001 36.5 21.8 198 417-626 68-279 (370)
476 TIGR03606 non_repeat_PQQ dehyd 87.4 22 0.00048 39.6 16.1 112 871-984 28-166 (454)
477 PF07569 Hira: TUP1-like enhan 87.3 3.7 8E-05 41.0 9.3 80 352-438 18-97 (219)
478 PF14781 BBS2_N: Ciliary BBSom 87.3 21 0.00045 31.8 13.9 122 771-911 5-133 (136)
479 COG5167 VID27 Protein involved 87.2 11 0.00023 41.2 12.7 142 507-659 478-632 (776)
480 KOG1900 Nuclear pore complex, 87.2 9.9 0.00021 46.7 13.9 170 332-527 66-273 (1311)
481 PF07250 Glyoxal_oxid_N: Glyox 87.2 17 0.00037 36.6 13.7 145 854-1002 48-207 (243)
482 PF07676 PD40: WD40-like Beta 87.1 2 4.4E-05 28.8 5.2 31 342-372 6-38 (39)
483 PF13449 Phytase-like: Esteras 87.1 38 0.00083 36.4 17.6 173 763-945 18-249 (326)
484 PF10395 Utp8: Utp8 family; I 87.0 22 0.00047 41.2 15.9 167 830-1001 128-314 (670)
485 KOG2377 Uncharacterized conser 86.9 50 0.0011 35.8 23.3 135 417-557 32-172 (657)
486 TIGR03548 mutarot_permut cycli 86.5 51 0.0011 35.5 22.4 71 507-577 123-199 (323)
487 PF12657 TFIIIC_delta: Transcr 86.2 3.4 7.4E-05 39.5 8.2 31 916-946 86-122 (173)
488 PF08728 CRT10: CRT10; InterP 85.9 4.7 0.0001 46.9 10.2 136 346-481 102-244 (717)
489 TIGR03606 non_repeat_PQQ dehyd 85.9 65 0.0014 36.1 28.1 62 344-418 29-90 (454)
490 KOG2247 WD40 repeat-containing 85.5 0.11 2.3E-06 55.4 -2.7 141 767-937 37-180 (615)
491 KOG1983 Tomosyn and related SN 84.6 24 0.00052 44.0 16.1 72 537-619 197-268 (993)
492 PF12768 Rax2: Cortical protei 83.8 15 0.00033 38.0 11.9 113 894-1011 15-145 (281)
493 TIGR02276 beta_rpt_yvtn 40-res 82.9 5.2 0.00011 27.2 5.8 39 841-880 1-41 (42)
494 COG5276 Uncharacterized conser 82.5 61 0.0013 33.1 29.0 162 342-533 84-248 (370)
495 PRK14131 N-acetylneuraminic ac 82.3 85 0.0018 34.6 21.2 40 609-650 314-353 (376)
496 PF05935 Arylsulfotrans: Aryls 82.1 35 0.00076 38.9 15.3 144 852-1002 128-311 (477)
497 COG5276 Uncharacterized conser 82.1 63 0.0014 33.0 28.0 153 495-660 87-242 (370)
498 PF05935 Arylsulfotrans: Aryls 82.0 81 0.0018 36.0 18.2 156 466-627 116-313 (477)
499 PF03022 MRJP: Major royal jel 81.7 73 0.0016 33.4 19.6 192 453-649 2-255 (287)
500 PF07250 Glyoxal_oxid_N: Glyox 81.4 19 0.00041 36.3 11.2 138 521-661 49-199 (243)
No 1
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.2e-72 Score=544.02 Aligned_cols=490 Identities=22% Similarity=0.317 Sum_probs=415.2
Q ss_pred hHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCC---HHHHHHHhhccCHHHHHHHHcCCCCCCCcccchhHHHHHHHhHH
Q 001790 5 SRELVFLILQFLEEEKFKESVHKLEKESGFFFN---MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (1012)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~---~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 81 (1012)
+.|++|+++|+|+++||.+|+.+||.|||+.+. ++.|.+.++.|+|++++..+..+...++.. ..++.|++++|+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~~~de~~-~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRISFEDERN-RKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhccCcchhh-hHHHHHHHHHHHH
Confidence 569999999999999999999999999999986 999999999999999999999886555444 4449999999999
Q ss_pred hHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCcc-chhhhcccCCchHHHHHHHHHHHhhccCCcccccc
Q 001790 82 LEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFR-ENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDK 160 (1012)
Q Consensus 82 ~ell~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~ 160 (1012)
||++..|....|+.+||+++.++ .++.+++++|++-+..++.. .++.-. -......|..|+++|+++|||++|
T Consensus 96 LEf~k~~~is~al~~l~~~~~~l-r~~~kk~~el~~sll~sn~~~~ne~~~-~~~~~n~R~~ll~elskyi~p~il---- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYL-RKNKKKFHELASSLLVSNDQFSNEENT-TAQLNNERDKLLDELSKYIPPNIL---- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhh-hhhHHHHHHHHHHHhccccccccccch-hhhhchhHHHHHHHHHhhCCHhhc----
Confidence 99999999999999999999999 67999999999877765433 333321 123457899999999999999998
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCC
Q 001790 161 LAFPTLKSSRLRTLINQSLNWQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240 (1012)
Q Consensus 161 ~~~~~~p~~rL~~ll~~~~~~q~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1012)
+|++||++||+||+++|+++|+|||+ .+..|||.||.|++.+ +|. ++.+++..
T Consensus 170 -----lP~rRLehLl~qAv~~Q~d~cvyhns-ldsvsll~Dh~c~~~q-----ip~----------qt~qil~~------ 222 (519)
T KOG0293|consen 170 -----LPKRRLEHLLEQAVKYQRDSCVYHNS-LDSVSLLSDHFCGRLQ-----IPS----------QTWQILQD------ 222 (519)
T ss_pred -----CChHHHHHHHHHHHHHHHhHhHHhcc-cchhhhhhhcccCccc-----CCc----------hhhhhHhh------
Confidence 99999999999999999999999995 6668999999999977 444 33443444
Q ss_pred CccccchhhhhhhhccCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCccccCCCChhhHhhhcCCCCCCccccc
Q 001790 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPTPGMVDYQNPDHEQLMKRLRPAPSAEEVTY 320 (1012)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1012)
T Consensus 223 -------------------------------------------------------------------------------- 222 (519)
T KOG0293|consen 223 -------------------------------------------------------------------------------- 222 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCcccccCCCCCccceEeecCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccce
Q 001790 321 SSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQAS 400 (1012)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1012)
|.++|+-+.||++|+ +||++++|.+..||++.....+. ...
T Consensus 223 ----------------------htdEVWfl~FS~nGk-yLAsaSkD~Taiiw~v~~d~~~k----------------l~~ 263 (519)
T KOG0293|consen 223 ----------------------HTDEVWFLQFSHNGK-YLASASKDSTAIIWIVVYDVHFK----------------LKK 263 (519)
T ss_pred ----------------------CCCcEEEEEEcCCCe-eEeeccCCceEEEEEEecCccee----------------eee
Confidence 445788888899999 79999999999999986544321 124
Q ss_pred eccCCCcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEE
Q 001790 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1012)
Q Consensus 401 ~~~~h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vw 480 (1012)
.+.+|..+|..+.||||.++|++|+.|..+++||+.+|+....+. .+|...+.+++|.|||. .+++|+.|+++..|
T Consensus 264 tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~~w 339 (519)
T KOG0293|consen 264 TLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFVTGSPDRTIIMW 339 (519)
T ss_pred eeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeEecCCCCcEEEe
Confidence 588999999999999999999999999999999999998876432 24668999999999999 79999999999999
Q ss_pred eCCCcceeeecCCc-cCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeec
Q 001790 481 ELSGRKLFNFEGHE-APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1012)
Q Consensus 481 d~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 559 (1012)
|.+|+.+..+++-. ..|.++++.+ ||+++++.+.|..|++++.++...+. +.....+|++++.|.||+++++.-
T Consensus 340 dlDgn~~~~W~gvr~~~v~dlait~--Dgk~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS~d~k~~LvnL-- 414 (519)
T KOG0293|consen 340 DLDGNILGNWEGVRDPKVHDLAITY--DGKYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSISKDGKLALVNL-- 414 (519)
T ss_pred cCCcchhhcccccccceeEEEEEcC--CCcEEEEEecccceeeechhhhhhhc-cccccCceeEEEEcCCCcEEEEEc--
Confidence 99999988888755 4588998855 77899999999999999987754443 344566899999999999999877
Q ss_pred CCCCCcEEEEeCCCCeeeeeecCCCCCc-ceEEEEe-cCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEe
Q 001790 560 KDGDSFLVEWNESEGTIKRTYAGFRKKS-NGVVQFD-TTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (1012)
Q Consensus 560 ~~~~~~i~lwd~~~~~~~~~~~~~~~~~-v~~~~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 637 (1012)
.+..+++||++....++.+.||.... +-.-||. .+..++++|++|+.|+||+..+++++..+..|. ..|++++|
T Consensus 415 --~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs--~~vNcVsw 490 (519)
T KOG0293|consen 415 --QDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHS--KTVNCVSW 490 (519)
T ss_pred --ccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCc--ceeeEEec
Confidence 48899999999999999999997743 2223444 355899999999999999999999999998654 58999999
Q ss_pred ec-CCCEEEEEECCCcEEEEEccC
Q 001790 638 SK-EGNLLAVTTADNGFKILANAI 660 (1012)
Q Consensus 638 s~-~g~~l~~~~~dg~i~iwd~~~ 660 (1012)
+| +..++|++++||+||||....
T Consensus 491 NP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 491 NPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCCCHHHhhccCCCCeEEEecCCc
Confidence 99 677899999999999998754
No 2
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=7e-64 Score=473.11 Aligned_cols=489 Identities=20% Similarity=0.318 Sum_probs=408.2
Q ss_pred chHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCC----HHHHHHHhhccCHHHHHHHHcCCCCCCCcccchhHHHHHHHh
Q 001790 4 LSRELVFLILQFLEEEKFKESVHKLEKESGFFFN----MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQ 79 (1012)
Q Consensus 4 ~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~ 79 (1012)
-+.+|||||.|||+|+.++++.++||+|.++++| ++.|-+.|.+|+||.++..++.+++++ +-+..+|||
T Consensus 6 essdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsLKLP~------kkL~dLYEq 79 (508)
T KOG0275|consen 6 ESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSLKLPD------KKLIDLYEQ 79 (508)
T ss_pred ecchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhccCch------hHHHHHHHH
Confidence 4579999999999999999999999999999998 889999999999999999999997554 578999999
Q ss_pred HHhHhhccCCHHHHHHHHHhh--cccccccCHHHHHHHHHhhcccCccchhhhcccCCchHHHHHHHHHHHhhccCCccc
Q 001790 80 KYLEALDRQDKAKAVDILVND--LKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLF 157 (1012)
Q Consensus 80 ~~~ell~~~~~~~A~~~l~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~ 157 (1012)
..|||+|.++...|..+||+- +..|+..+||+|.+|+.||..+.++..+.+.+ .+.+++|..+.+.|...+.-
T Consensus 80 ivlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~d-ssKEkrRa~IAQ~ls~EV~V---- 154 (508)
T KOG0275|consen 80 IVLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGD-SSKEKRRAVIAQALSGEVHV---- 154 (508)
T ss_pred HHHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCc-chHHHHHHHHHHHhcCceEE----
Confidence 999999999999999999873 67778889999999999999999999998664 34567788888888877766
Q ss_pred cccccCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCC
Q 001790 158 RDKLAFPTLKSSRLRTLINQSLNWQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSP 237 (1012)
Q Consensus 158 ~~~~~~~~~p~~rL~~ll~~~~~~q~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 237 (1012)
+||+||+.||+||++||.++ +++|++.+++ .
T Consensus 155 --------VppSRLlaLlGQaLKWQqHQ-----------------------------------GLLPPGt~iD------L 185 (508)
T KOG0275|consen 155 --------VPPSRLLALLGQALKWQQHQ-----------------------------------GLLPPGTTID------L 185 (508)
T ss_pred --------cChHHHHHHHHHHhhhHhhc-----------------------------------CCCCCCceee------e
Confidence 99999999999999999885 3444444454 5
Q ss_pred CCCCccccchhhhhhhhccCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCccccCCCChhhHhhhcCCCCCCcc
Q 001790 238 FPPTAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPTPGMVDYQNPDHEQLMKRLRPAPSAEE 317 (1012)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (1012)
|++.+.-.. ++ ....|.
T Consensus 186 FRGkAA~K~--------------------~~---Ee~~Pt---------------------------------------- 202 (508)
T KOG0275|consen 186 FRGKAAMKD--------------------QE---EERYPT---------------------------------------- 202 (508)
T ss_pred ccchhhhhh--------------------hH---hhhchH----------------------------------------
Confidence 666530000 00 000000
Q ss_pred ccccCCCcccccCCCCCccceEeecCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccc
Q 001790 318 VTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPF 397 (1012)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 397 (1012)
.......|+.++.+.|..|||||+ +|++|+.||.|.+||..+|+......+.
T Consensus 203 ----------------~l~r~IKFg~KSh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQ----------- 254 (508)
T KOG0275|consen 203 ----------------QLARSIKFGQKSHVECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQ----------- 254 (508)
T ss_pred ----------------HhhhheecccccchhheeeCCCCc-eEeeccccceeeeehhccchhhhhhhhh-----------
Confidence 011233456777899999999999 7999999999999999999876432221
Q ss_pred cceeccCCCcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeee-ccccCeEEEEEeCCCCceEEEEEcCCCc
Q 001790 398 QASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (1012)
Q Consensus 398 ~~~~~~~h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~-~h~~~v~~l~~s~~~~~~~l~s~~~d~~ 476 (1012)
....+.-+..+|.|+.||.|...||+|+.||.|+||.+.+|.|++. +. .|+..|+|+.|+.|+. .+++++.|.+
T Consensus 255 Aqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRr---FdrAHtkGvt~l~FSrD~S--qiLS~sfD~t 329 (508)
T KOG0275|consen 255 AQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRR---FDRAHTKGVTCLSFSRDNS--QILSASFDQT 329 (508)
T ss_pred hhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHH---hhhhhccCeeEEEEccCcc--hhhcccccce
Confidence 1123555889999999999999999999999999999999999984 44 8999999999999999 7999999999
Q ss_pred EEEEe-CCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCC--CcEEEEEEccCC-Ce
Q 001790 477 IKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG--HWCTTMLYSADG-SR 552 (1012)
Q Consensus 477 v~vwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~--~~v~~~~~s~~~-~~ 552 (1012)
+++.- .+|+++..|+||+..|+...|.+ +|..+++++.||+|++|+..+.++..++...+ .+|.++..-|.+ ..
T Consensus 330 vRiHGlKSGK~LKEfrGHsSyvn~a~ft~--dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh 407 (508)
T KOG0275|consen 330 VRIHGLKSGKCLKEFRGHSSYVNEATFTD--DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEH 407 (508)
T ss_pred EEEeccccchhHHHhcCccccccceEEcC--CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCce
Confidence 99999 99999999999999999999854 77899999999999999999999888776544 478888877754 46
Q ss_pred EEEeeecCCCCCcEEEEeCCCCeeeeeecCCC--CCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCC
Q 001790 553 LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR--KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP 630 (1012)
Q Consensus 553 l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (1012)
+++|. ..+++++.++ .|+.++.|.... ++..-+++.+|.|.++++.++|+.++.|...+|++...+..+..
T Consensus 408 ~iVCN----rsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk-- 480 (508)
T KOG0275|consen 408 FIVCN----RSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK-- 480 (508)
T ss_pred EEEEc----CCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc--
Confidence 66665 4788999887 477788776432 23456688999999999999999999999999999999887654
Q ss_pred CcceeEeecCCCEEEEEECCCcEEEEE
Q 001790 631 NLPRLRFSKEGNLLAVTTADNGFKILA 657 (1012)
Q Consensus 631 ~v~~v~~s~~g~~l~~~~~dg~i~iwd 657 (1012)
.+..++-+|..+.+|+-+.||.+++|.
T Consensus 481 dvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 481 DVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cccccccCcccchhhhhcccchhhhcC
Confidence 688999999999999999999999994
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.5e-56 Score=467.33 Aligned_cols=578 Identities=15% Similarity=0.241 Sum_probs=466.5
Q ss_pred EEEecCCCcEEEEecCCCeEEEEEccCCcee-cccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEECCC
Q 001790 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRL-VSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH 428 (1012)
Q Consensus 350 ~~~spdg~~llasg~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~ 428 (1012)
++||++|+ .|++... ..|.+-|+.++... ... -.+-...+++++.+||+++|++++..+
T Consensus 25 ~~~s~nG~-~L~t~~~-d~Vi~idv~t~~~~l~s~------------------~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQ-HLYTACG-DRVIIIDVATGSIALPSG------------------SNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCC-EEEEecC-ceEEEEEccCCceecccC------------------CccchhhhheeeecCCccEEEEeeccc
Confidence 89999999 6888763 46888899988763 211 223466899999999999999999999
Q ss_pred eEEEEeecCCCcceeeeeeec-cccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCCccCEEEEeccccC
Q 001790 429 LIQLYSYAGSNDLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKE 506 (1012)
Q Consensus 429 ~v~vwd~~~~~~~~~~~~l~~-h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~v~~~~~~~~~ 506 (1012)
.+++|++.+|+.++ .++. |++||.-++|+|.|. .+++|+.|+.++||| ..+.+...|+||.+.|.++.|++..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998887 4665 999999999999997 899999999999999 8899999999999999999999988
Q ss_pred CceEEEEEecCCeEEEEEcCCCCc-eeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCC
Q 001790 507 NIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK 585 (1012)
Q Consensus 507 ~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~ 585 (1012)
+...|++|..|+++++||+++... ...+..|.+.|++++|++|+..+++++ .|..+.+||+.+.+..++++...
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~----RDkvi~vwd~~~~~~l~~lp~ye- 234 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVG----RDKVIIVWDLVQYKKLKTLPLYE- 234 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEec----cCcEEEEeehhhhhhhheechhh-
Confidence 878899999999999999996555 667888999999999999999999998 59999999998877777776554
Q ss_pred CcceEEEEecC-----CCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccC
Q 001790 586 KSNGVVQFDTT-----QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1012)
Q Consensus 586 ~~v~~~~~s~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~ 660 (1012)
.+.++.+-++ +.+++++|.+|.+++||.++++++........ ..+..+..-+....++..+.|..+.++|..+
T Consensus 235 -~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~-~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~ 312 (775)
T KOG0319|consen 235 -SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDS-EEIDHLLAIESMSQLLLVTAEQNLFLYDEDE 312 (775)
T ss_pred -heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCc-hhhhcceeccccCceEEEEccceEEEEEccc
Confidence 4666777776 67999999999999999999988776655432 2366666666666677777888999999887
Q ss_pred CceeeecccCCccccccCccceeeec-cccccccccCCCCCccccccCCCCCCccccCCC-----CCCCCCCCCcccccc
Q 001790 661 GLRSLRAVENPPFEALRTPIESVALK-VSASSAVSSGTPANCKVERSSPVRPSPIINGVD-----PTSRSMDKPRTVDDV 734 (1012)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~v~~v~~s-~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~ 734 (1012)
. ...+.+.|.... |.++.|- |+.+.++.+......++. ..+......+.|.. ......|.++++++.
T Consensus 313 l-~i~k~ivG~ndE-----I~Dm~~lG~e~~~laVATNs~~lr~y-~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sK 385 (775)
T KOG0319|consen 313 L-TIVKQIVGYNDE-----ILDMKFLGPEESHLAVATNSPELRLY-TLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSK 385 (775)
T ss_pred c-EEehhhcCCchh-----heeeeecCCccceEEEEeCCCceEEE-ecCCCceEEEeCchhheeeeeecccCcEEEEecC
Confidence 7 566666665544 6666664 455555544444444333 22222222444433 123456779999999
Q ss_pred cCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCc-ceEEEeeccCeeEeeeccccccCCCCCccccccceee
Q 001790 735 TDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSA-VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHW 813 (1012)
Q Consensus 735 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g-~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~ 813 (1012)
|+++++|.++. .......+....+|.+.|.+++++..+ .++++++.|+++++|++...+....
T Consensus 386 D~svilWr~~~----~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~------------ 449 (775)
T KOG0319|consen 386 DKSVILWRLNN----NCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF------------ 449 (775)
T ss_pred CceEEEEEecC----CcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc------------
Confidence 99999999842 222223333345699999999998765 4788899999999999876221110
Q ss_pred ccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEEEc-CCcEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEEe
Q 001790 814 LPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT 892 (1012)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~ 892 (1012)
............|...|.|++++|+.+++|+|+ |.+.+||+++.+....++.||...|.++.|+| ..+.+|++|
T Consensus 450 ----~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~-~dq~laT~S 524 (775)
T KOG0319|consen 450 ----PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSK-NDQLLATCS 524 (775)
T ss_pred ----cceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEecc-ccceeEecc
Confidence 001111112234999999999999999999999 99999999999999999999999999999999 889999999
Q ss_pred CCCeEEEEEccCCeEeEEecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCccccEEEecCCCCCCCCceEEEEc
Q 001790 893 EDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFN 972 (1012)
Q Consensus 893 ~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs 972 (1012)
.|++|+||.+.++.++++|.||+..|..+.|-.+|+.|+|++.||.+++|++++++++. ....|. ..|++++-+
T Consensus 525 gD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~-----tlD~H~-DrvWaL~~~ 598 (775)
T KOG0319|consen 525 GDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEM-----TLDAHN-DRVWALSVS 598 (775)
T ss_pred CCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhh-----hhhhcc-ceeEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999654 445666 899999999
Q ss_pred CCCCEEEEE-eCCeEEEEECCC
Q 001790 973 ADQVRMLVV-HETQLAIYDASK 993 (1012)
Q Consensus 973 ~d~~~l~~~-~d~~i~vwd~~~ 993 (1012)
+++.++++| .||.|.+|.=.|
T Consensus 599 ~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 599 PLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred CccceeEecCCCeEEEEeecCc
Confidence 999999987 799999997444
No 4
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.3e-51 Score=415.96 Aligned_cols=561 Identities=15% Similarity=0.234 Sum_probs=431.8
Q ss_pred CccccccCCCcccccCCCCCccceEeecCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccC
Q 001790 315 AEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACS 394 (1012)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 394 (1012)
-+.+.|......+.+.-+-+.......+|...++-..|||.|- ++|+|...|.|+|||....+.+...+
T Consensus 30 gd~ilY~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKne---------- 98 (603)
T KOG0318|consen 30 GDNILYTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNE---------- 98 (603)
T ss_pred CCeEEEeCCCEEEEEECCCccceeeeccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeee----------
Confidence 3445565555553333333344555567999999999999998 79999999999999987655443222
Q ss_pred ccccceeccCCCcceEEEEEccCCCEEEEEECC--CeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEc
Q 001790 395 LPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK--HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG 472 (1012)
Q Consensus 395 ~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d--~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~ 472 (1012)
+..-.++|..++|++|+++|++.+.. +..+++-.++|..+. .+.||...|.+++|-|.-.. .++||+
T Consensus 99 -------f~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~s 167 (603)
T KOG0318|consen 99 -------FQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVG---EITGHSRRINSVDFKPSRPF-RIATGS 167 (603)
T ss_pred -------eeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccc---eeeccceeEeeeeccCCCce-EEEecc
Confidence 33356799999999999999877643 334444445665555 68899999999999987765 899999
Q ss_pred CCCcEEEEe-CCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeec---CCCCcEEEEEEcc
Q 001790 473 DDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---APGHWCTTMLYSA 548 (1012)
Q Consensus 473 ~d~~v~vwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~---~~~~~v~~~~~s~ 548 (1012)
+|++|.+|+ ..-+...++..|..-|.++.|+| ||.++++++.||++.+||-.+++....+. .|.+.|.+++|+|
T Consensus 168 dDn~v~ffeGPPFKFk~s~r~HskFV~~VRysP--DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP 245 (603)
T KOG0318|consen 168 DDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSP--DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP 245 (603)
T ss_pred CCCeEEEeeCCCeeeeecccccccceeeEEECC--CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECC
Confidence 999999999 66677788889999999999977 67899999999999999999999888887 7888999999999
Q ss_pred CCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCC--CcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecC
Q 001790 549 DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK--KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (1012)
Q Consensus 549 ~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1012)
|+..+++++ .|.++++||+.+.++++++..... ...-.+-|. ...|++.+.+|.|.+++...+..+..+..
T Consensus 246 Ds~~~~T~S----aDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~G- 318 (603)
T KOG0318|consen 246 DSTQFLTVS----ADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISG- 318 (603)
T ss_pred CCceEEEec----CCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecc-
Confidence 999999999 499999999999999998875543 122223343 67899999999999999999998777774
Q ss_pred CCCCCcceeEeecCCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeeccccccccccCCCCCcccccc
Q 001790 627 GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERS 706 (1012)
Q Consensus 627 ~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~ 706 (1012)
|...|+++..+|++.+|++|+.||.|.-|+..++......-+ .+...|..++.+..
T Consensus 319 -HnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~-----~h~nqI~~~~~~~~------------------ 374 (603)
T KOG0318|consen 319 -HNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGK-----GHTNQIKGMAASES------------------ 374 (603)
T ss_pred -cccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccc-----cccceEEEEeecCC------------------
Confidence 455899999999999999999999999999988732221112 23333444444332
Q ss_pred CCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeeccC
Q 001790 707 SPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNG 786 (1012)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 786 (1012)
..+++.+.|.++++.++....-..... +. ......+++..+++..++.+..++
T Consensus 375 --------------------~~~~t~g~Dd~l~~~~~~~~~~t~~~~-~~------lg~QP~~lav~~d~~~avv~~~~~ 427 (603)
T KOG0318|consen 375 --------------------GELFTIGWDDTLRVISLKDNGYTKSEV-VK------LGSQPKGLAVLSDGGTAVVACISD 427 (603)
T ss_pred --------------------CcEEEEecCCeEEEEecccCcccccce-ee------cCCCceeEEEcCCCCEEEEEecCc
Confidence 345678888888887764322111110 11 223345888888887777776665
Q ss_pred eeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEEEc-CCcEEEEEcCCCeEE
Q 001790 787 VQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVM 865 (1012)
Q Consensus 787 ~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~lwd~~~~~~~ 865 (1012)
.+.+-+... +.. .+......+++++|+++.+|+|+ ||.|++|.+..+...
T Consensus 428 iv~l~~~~~------------------------~~~-----~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ 478 (603)
T KOG0318|consen 428 IVLLQDQTK------------------------VSS-----IPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELK 478 (603)
T ss_pred EEEEecCCc------------------------cee-----eccccccceEEEcCCCCEEEEecccceEEEEEecCCccc
Confidence 554432211 000 11455678999999999999999 999999999865533
Q ss_pred --EEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeEE-ecccCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 001790 866 --TTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK-LKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942 (1012)
Q Consensus 866 --~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~-~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~vw 942 (1012)
..+..|.++|++++||| |+.+||+|...+.|.+||+.+.+.... +.-|++.|.+++|+|+..++||||-|-+|.||
T Consensus 479 ee~~~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiy 557 (603)
T KOG0318|consen 479 EEAKLLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIY 557 (603)
T ss_pred ceeeeecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEE
Confidence 34567999999999999 999999999999999999999877433 34499999999999999999999999999999
Q ss_pred eCCCCCccccEEEecCCCCCCCCceEEEEcCCCCEEEEEeCCeEEEEECC
Q 001790 943 SIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDAS 992 (1012)
Q Consensus 943 d~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~d~~i~vwd~~ 992 (1012)
+++..... +.+...|. ..|+.+.|..+...+-+|.|..|++|++.
T Consensus 558 sv~kP~~~----i~iknAH~-~gVn~v~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 558 SVKKPAKH----IIIKNAHL-GGVNSVAWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EccChhhh----eEeccccc-cCceeEEEecCceEEeccCcceeEEeccc
Confidence 99875532 33444555 56999999988887777899999999974
No 5
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.7e-52 Score=436.35 Aligned_cols=532 Identities=19% Similarity=0.290 Sum_probs=422.7
Q ss_pred ccccccCCCcc---cccCCCCCccceEeec--CCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccc
Q 001790 316 EEVTYSSSRHQ---TWSLDDLPRTVAVSLH--QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDM 390 (1012)
Q Consensus 316 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~--h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~ 390 (1012)
.++.+.+...+ +|.+... .+++... |+++|.-++|+|.|. +||+|+.||.|+|||+..+.+.+.
T Consensus 74 ~~~L~~a~rs~llrv~~L~tg--k~irswKa~He~Pvi~ma~~~~g~-LlAtggaD~~v~VWdi~~~~~th~-------- 142 (775)
T KOG0319|consen 74 EEVLVTASRSQLLRVWSLPTG--KLIRSWKAIHEAPVITMAFDPTGT-LLATGGADGRVKVWDIKNGYCTHS-------- 142 (775)
T ss_pred ccEEEEeeccceEEEEEcccc--hHhHhHhhccCCCeEEEEEcCCCc-eEEeccccceEEEEEeeCCEEEEE--------
Confidence 55666666666 6666553 3344443 999999999999996 899999999999999999888765
Q ss_pred cccCccccceeccCCCcceEEEEEccCCC--EEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEE
Q 001790 391 AACSLPFQASIFKDVPISVSRVAWSPDGN--YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCV 468 (1012)
Q Consensus 391 ~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l 468 (1012)
|+||.+.|.++.|.|+-. .|++|..|++|++||+.+... ...++..|...|++++|++|+. .+
T Consensus 143 -----------fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t--cl~~~~~H~S~vtsL~~~~d~~--~~ 207 (775)
T KOG0319|consen 143 -----------FKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT--CLHTMILHKSAVTSLAFSEDSL--EL 207 (775)
T ss_pred -----------ecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch--HHHHHHhhhhheeeeeeccCCc--eE
Confidence 999999999999999654 589999999999999996554 2336789999999999999998 79
Q ss_pred EEEcCCCcEEEEe-CCCcceeeecCCccCEEEEecccc---CCceEEEEEecCCeEEEEEcCCCCceeeecCC-CCcEEE
Q 001790 469 VTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHK---ENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-GHWCTT 543 (1012)
Q Consensus 469 ~s~~~d~~v~vwd-~~~~~~~~~~~h~~~v~~~~~~~~---~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-~~~v~~ 543 (1012)
++++.|..+.+|| .+.+..+++.-.. .+-++.+.+. ..+.+++++|.+|.+++||.++.......... ...+..
T Consensus 208 ls~~RDkvi~vwd~~~~~~l~~lp~ye-~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~ 286 (775)
T KOG0319|consen 208 LSVGRDKVIIVWDLVQYKKLKTLPLYE-SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDH 286 (775)
T ss_pred EEeccCcEEEEeehhhhhhhheechhh-heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhc
Confidence 9999999999999 7766666655332 3444444332 11469999999999999999887776544333 223555
Q ss_pred EEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEE-ecCCCEEEEEeCCCcEEEEeCCCCeeEEE
Q 001790 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQF-DTTQNHFLAVGEDSQIKFWDMDNVNILTS 622 (1012)
Q Consensus 544 ~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 622 (1012)
+...+....++... .+..+.+||.++.+..+.+.|.++ .|..++| .|+.+++++++..+.+++|+..+..+. .
T Consensus 287 ~~~~~~~~~~l~vt----aeQnl~l~d~~~l~i~k~ivG~nd-EI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-i 360 (775)
T KOG0319|consen 287 LLAIESMSQLLLVT----AEQNLFLYDEDELTIVKQIVGYND-EILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-I 360 (775)
T ss_pred ceeccccCceEEEE----ccceEEEEEccccEEehhhcCCch-hheeeeecCCccceEEEEeCCCceEEEecCCCceE-E
Confidence 44444444444444 388999999999999999999888 5666655 678899999999999999999887766 3
Q ss_pred EecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeeccccccccccCCCCCcc
Q 001790 623 TDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCK 702 (1012)
Q Consensus 623 ~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~ 702 (1012)
+. +|...|.++....+|-+|++|+.|.++++|.+.++.... ..-.....|.+.|.+++++..+.
T Consensus 361 i~--GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~--~~~a~~~gH~~svgava~~~~~a------------ 424 (775)
T KOG0319|consen 361 IP--GHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKS--LCVAQANGHTNSVGAVAGSKLGA------------ 424 (775)
T ss_pred Ee--CchhheeeeeecccCcEEEEecCCceEEEEEecCCcchh--hhhhhhcccccccceeeecccCc------------
Confidence 44 556688999877788999999999999999885542211 11112334556677777754433
Q ss_pred ccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecC-CCCCCCCceEEEEEecCcceEEE
Q 001790 703 VERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMP-ESTDTSSKVVRLLYTNSAVGLLA 781 (1012)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~-~~~~~~~~i~~l~~s~~g~~l~~ 781 (1012)
..+++++.|+++++|++....+......+... ....|...|.+++++|+.+.+++
T Consensus 425 ------------------------sffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT 480 (775)
T KOG0319|consen 425 ------------------------SFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIAT 480 (775)
T ss_pred ------------------------cEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEe
Confidence 35689999999999999863333222222110 11348999999999999999999
Q ss_pred eeccCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEEEc-CCcEEEEEcC
Q 001790 782 LGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMM 860 (1012)
Q Consensus 782 ~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~lwd~~ 860 (1012)
++.|.+.++|+++.. .+...+.| |...|.|+.|++..+.+|+++ |++|+||.+.
T Consensus 481 ~SqDktaKiW~le~~-----------------------~l~~vLsG--H~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is 535 (775)
T KOG0319|consen 481 GSQDKTAKIWDLEQL-----------------------RLLGVLSG--HTRGVWCVSFSKNDQLLATCSGDKTVKIWSIS 535 (775)
T ss_pred cccccceeeecccCc-----------------------eEEEEeeC--CccceEEEEeccccceeEeccCCceEEEEEec
Confidence 999999999986521 12233566 999999999999999999999 9999999999
Q ss_pred CCeEEEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeEEecccCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 001790 861 TFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLC 940 (1012)
Q Consensus 861 ~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~ 940 (1012)
++.+++++.||...|..+.|-. ++..|++++.||-+++|++.+++|+.++.+|.+.|.+++-+|.+.+++||+.||.|.
T Consensus 536 ~fSClkT~eGH~~aVlra~F~~-~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~ 614 (775)
T KOG0319|consen 536 TFSCLKTFEGHTSAVLRASFIR-NGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRII 614 (775)
T ss_pred cceeeeeecCccceeEeeeeee-CCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEE
Confidence 9999999999999999999999 899999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCC
Q 001790 941 VWSIDT 946 (1012)
Q Consensus 941 vwd~~~ 946 (1012)
+|.=.+
T Consensus 615 ~wkD~T 620 (775)
T KOG0319|consen 615 FWKDVT 620 (775)
T ss_pred EeecCc
Confidence 997544
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-53 Score=413.84 Aligned_cols=375 Identities=22% Similarity=0.374 Sum_probs=307.5
Q ss_pred cccCCCCCccceEeecCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCC
Q 001790 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1012)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1012)
+.++.+......-.-+|.++|-|++|+|+|+ .||+|+.|.++++||+.+...+++ .++|.
T Consensus 98 vfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH~ 157 (480)
T KOG0271|consen 98 VFRVRPVTRCSSSIAGHGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFT-------------------CKGHK 157 (480)
T ss_pred hhcccccceeccccCCCCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCccee-------------------ecCCc
Confidence 5555555565556667999999999999999 699999999999999999877654 88999
Q ss_pred cceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeC-----CCCceEEEEEcCCCcEEEEe
Q 001790 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY-----PNKLLCVVTCGDDKLIKVWE 481 (1012)
Q Consensus 407 ~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~-----~~~~~~l~s~~~d~~v~vwd 481 (1012)
..|.|++|||||+.||+|+.||+|++||.++|+++.. .|.+|...|++++|-| ..+ ++|+++.||+|+|||
T Consensus 158 ~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd 233 (480)
T KOG0271|consen 158 NWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWD 233 (480)
T ss_pred cEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEE
Confidence 9999999999999999999999999999999987754 6889999999999976 455 799999999999999
Q ss_pred -CCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecC
Q 001790 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1012)
Q Consensus 482 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1012)
..+.++..+.+|+.+|+|+.|-. + .++++|+.|++|++|+...+.....+.+|.+.|+.++.+.|- ++
T Consensus 234 ~~~~~~~~~lsgHT~~VTCvrwGG--~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy--~L------ 302 (480)
T KOG0271|consen 234 TKLGTCVRTLSGHTASVTCVRWGG--E-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDY--VL------ 302 (480)
T ss_pred ccCceEEEEeccCccceEEEEEcC--C-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchh--hh------
Confidence 88899999999999999999843 3 499999999999999999988899999999999999887552 11
Q ss_pred CCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecC
Q 001790 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1012)
Q Consensus 561 ~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 640 (1012)
++ -+|.|.++..-..+ +.. .+.+..+ ....-..
T Consensus 303 -----------Rt-----------------gaf~~t~~~~~~~s--------e~~-~~Al~rY----------~~~~~~~ 335 (480)
T KOG0271|consen 303 -----------RT-----------------GAFDHTGRKPKSFS--------EEQ-KKALERY----------EAVLKDS 335 (480)
T ss_pred -----------hc-----------------cccccccccCCChH--------HHH-HHHHHHH----------HHhhccC
Confidence 11 11222221110000 000 0000001 1111224
Q ss_pred CCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeeccccccccccCCCCCccccccCCCCCCccccCCCC
Q 001790 641 GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDP 720 (1012)
Q Consensus 641 g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1012)
+..+++|++|.++.+|+.....+...
T Consensus 336 ~erlVSgsDd~tlflW~p~~~kkpi~------------------------------------------------------ 361 (480)
T KOG0271|consen 336 GERLVSGSDDFTLFLWNPFKSKKPIT------------------------------------------------------ 361 (480)
T ss_pred cceeEEecCCceEEEecccccccchh------------------------------------------------------
Confidence 57889999999999997543211100
Q ss_pred CCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeeccCeeEeeeccccccCC
Q 001790 721 TSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNP 800 (1012)
Q Consensus 721 ~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~ 800 (1012)
T Consensus 362 -------------------------------------------------------------------------------- 361 (480)
T KOG0271|consen 362 -------------------------------------------------------------------------------- 361 (480)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEEEc-CCcEEEEEcCCCeEEEEEcCCCCCeeEEE
Q 001790 801 SGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLA 879 (1012)
Q Consensus 801 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~i~~l~ 879 (1012)
...+ |..-|..+.||||++++|+++ |..|++||..+|+.+.+|+||-..|..++
T Consensus 362 -----------------------rmtg--Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqva 416 (480)
T KOG0271|consen 362 -----------------------RMTG--HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVA 416 (480)
T ss_pred -----------------------hhhc--hhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEE
Confidence 0111 778889999999999999999 99999999999999999999999999999
Q ss_pred EecCCCcEEEEEeCCCeEEEEEccCCeEeEEecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001790 880 FHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 943 (1012)
Q Consensus 880 ~sp~d~~~las~~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd 943 (1012)
|+. |.++|++|+.|.++++|++.+.++...+.||.+.|.++.|+|||..+++|+.|+.+++|.
T Consensus 417 wsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 417 WSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ecc-CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999 999999999999999999999999999999999999999999999999999999999995
No 7
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.9e-49 Score=412.90 Aligned_cols=519 Identities=17% Similarity=0.258 Sum_probs=410.5
Q ss_pred CCCccceEeec--CCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcce
Q 001790 332 DLPRTVAVSLH--QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISV 409 (1012)
Q Consensus 332 ~~~~~~~~~~~--h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 409 (1012)
++.....+++. +...|++++.||+|. +|++-...|...+-++.....++.+.| ..+|
T Consensus 41 dLknN~S~Tl~~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r~Vlh~f~f--------------------k~~v 99 (893)
T KOG0291|consen 41 DLKNNKSYTLPLETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSRSVLHRFNF--------------------KRGV 99 (893)
T ss_pred EccCCcceeEEeecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccceeeEEEee--------------------cCcc
Confidence 33344455554 888999999999999 566667888888888877666654322 4689
Q ss_pred EEEEEccCCCEEEEEECCCeEEEEeecCCCc-----ceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-C-
Q 001790 410 SRVAWSPDGNYVGVAFTKHLIQLYSYAGSND-----LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L- 482 (1012)
Q Consensus 410 ~~v~~spdg~~las~~~d~~v~vwd~~~~~~-----~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~- 482 (1012)
.|+.|||||+++|+|.. +.+.||....... .....++.+|...|.++.|+.|.+ +|++|+.|.++++|+ .
T Consensus 100 ~~i~fSPng~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr--~l~~gsrD~s~rl~~v~~ 176 (893)
T KOG0291|consen 100 GAIKFSPNGKFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR--LLVTGSRDLSARLFGVDG 176 (893)
T ss_pred ceEEECCCCcEEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc--eEEeccccceEEEEEecc
Confidence 99999999999998854 5699998764322 233346779999999999999999 899999999999999 3
Q ss_pred -CCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCC-----------------------CCc--------
Q 001790 483 -SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-----------------------MGS-------- 530 (1012)
Q Consensus 483 -~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~-----------------------~~~-------- 530 (1012)
.+-....+.+|.+.|.++-|.. +...+++.+.||.+.+|..+. ++.
T Consensus 177 ~k~~~~~~l~gHkd~VvacfF~~--~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~ 254 (893)
T KOG0291|consen 177 NKNLFTYALNGHKDYVVACFFGA--NSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWY 254 (893)
T ss_pred ccccceEeccCCCcceEEEEecc--CcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEE
Confidence 3333677889999999988754 556799999999999998761 111
Q ss_pred ---eeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeC-C
Q 001790 531 ---RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE-D 606 (1012)
Q Consensus 531 ---~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d 606 (1012)
+..+......+++.+|++.-+.|+++- ..|...+|++....++..+.-... .|..++|+..|.+++.|+. -
T Consensus 255 k~~k~~ln~~~~kvtaa~fH~~t~~lvvgF----ssG~f~LyelP~f~lih~LSis~~-~I~t~~~N~tGDWiA~g~~kl 329 (893)
T KOG0291|consen 255 KTKKHYLNQNSSKVTAAAFHKGTNLLVVGF----SSGEFGLYELPDFNLIHSLSISDQ-KILTVSFNSTGDWIAFGCSKL 329 (893)
T ss_pred EEEeeeecccccceeeeeccCCceEEEEEe----cCCeeEEEecCCceEEEEeecccc-eeeEEEecccCCEEEEcCCcc
Confidence 001122235789999999999999987 488899999999999998887655 7999999999999999875 5
Q ss_pred CcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeec
Q 001790 607 SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALK 686 (1012)
Q Consensus 607 g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s 686 (1012)
|.+.||+..+..-+. +..+|...+++++++|||+++|+|++||.|+|||..++. +.
T Consensus 330 gQLlVweWqsEsYVl--KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf-C~--------------------- 385 (893)
T KOG0291|consen 330 GQLLVWEWQSESYVL--KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF-CF--------------------- 385 (893)
T ss_pred ceEEEEEeeccceee--eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCce-EE---------------------
Confidence 899999998765554 444667799999999999999999999999999987761 22
Q ss_pred cccccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCc
Q 001790 687 VSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSK 766 (1012)
Q Consensus 687 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (1012)
+++.+ |.+.
T Consensus 386 --------------------------------------------------------------------vTFte---Hts~ 394 (893)
T KOG0291|consen 386 --------------------------------------------------------------------VTFTE---HTSG 394 (893)
T ss_pred --------------------------------------------------------------------EEecc---CCCc
Confidence 12222 8899
Q ss_pred eEEEEEecCcceEEEeeccCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEE
Q 001790 767 VVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYV 846 (1012)
Q Consensus 767 i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 846 (1012)
|+.+.|+..|+.+++.+-||+|+.||+..-. ... .+.. +..-...|++..|.|..+
T Consensus 395 Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr----------------------NfR-Tft~-P~p~QfscvavD~sGelV 450 (893)
T KOG0291|consen 395 VTAVQFTARGNVLLSSSLDGTVRAWDLKRYR----------------------NFR-TFTS-PEPIQFSCVAVDPSGELV 450 (893)
T ss_pred eEEEEEEecCCEEEEeecCCeEEeeeecccc----------------------eee-eecC-CCceeeeEEEEcCCCCEE
Confidence 9999999999999999999999999875321 111 1111 134456788888889999
Q ss_pred EEEc-CC-cEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCC-eEeEEecccCCCeEEEEE
Q 001790 847 MSAT-GG-KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD-EVKSKLKGHQKRITGLAF 923 (1012)
Q Consensus 847 a~~s-dg-~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~-~~~~~~~~h~~~V~~l~~ 923 (1012)
++|+ |. .|.+|++++|+++-.+.||.++|.+++|+| .+..||+|++|++|++||+-.. ..+.++. +...|..++|
T Consensus 451 ~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsf 528 (893)
T KOG0291|consen 451 CAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSF 528 (893)
T ss_pred EeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEE
Confidence 9998 54 499999999999999999999999999999 9999999999999999999754 3344454 6778999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCCccccEEE--------------ecCCCCCCCCceEEEEcCCCCEEEEE-eCCeEEE
Q 001790 924 STSLNILVSSGADAQLCVWSIDTWEKRKSVTI--------------HIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAI 988 (1012)
Q Consensus 924 spdg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~--------------~~~~~~~~~~v~~l~fs~d~~~l~~~-~d~~i~v 988 (1012)
+|||+.|++++-||.|.+||...+.....+.- ...........+.+++|+||.++++| ....|++
T Consensus 529 rPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCi 608 (893)
T KOG0291|consen 529 RPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICI 608 (893)
T ss_pred cCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEE
Confidence 99999999999999999999987554322110 00000111578999999999999998 5789999
Q ss_pred EECCCceEEEeecC
Q 001790 989 YDASKMERIRQVGS 1002 (1012)
Q Consensus 989 wd~~~~~~~~~~~~ 1002 (1012)
|++.++-.++.|.-
T Consensus 609 Y~v~~~vllkkfqi 622 (893)
T KOG0291|consen 609 YDVPEGVLLKKFQI 622 (893)
T ss_pred EECchhheeeeEEe
Confidence 99999999988854
No 8
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-49 Score=417.30 Aligned_cols=514 Identities=13% Similarity=0.283 Sum_probs=399.0
Q ss_pred cccCCCCCccceEee-cCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCC
Q 001790 327 TWSLDDLPRTVAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405 (1012)
Q Consensus 327 ~~~~~~~~~~~~~~~-~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 405 (1012)
+|++........... ....+|+|+.-+||.. +||+|..||.|+||+..++..+.+ +.||
T Consensus 47 ~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~t-------------------fngH 106 (888)
T KOG0306|consen 47 IWDLRTGEIEKKLILLKKKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILIT-------------------FNGH 106 (888)
T ss_pred EEeeecchhhhhhhhhcccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceeee-------------------eccc
Confidence 777776543333333 3556999999999988 799999999999999988765533 8899
Q ss_pred CcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCC
Q 001790 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1012)
Q Consensus 406 ~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~ 484 (1012)
...|+++.|...|..||+|+.|+.|.+||+-...-.. .+.||...|+..-|..+.+ ++++.+.|+.|++|| .+.
T Consensus 107 K~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tq 181 (888)
T KOG0306|consen 107 KAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQ 181 (888)
T ss_pred ccceEEEEEcccCceEeecCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccc
Confidence 9999999999999999999999999999998754443 6899999999999998777 899999999999999 888
Q ss_pred cceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCce------e-------eecCC--------------
Q 001790 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR------V-------DYDAP-------------- 537 (1012)
Q Consensus 485 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~------~-------~~~~~-------------- 537 (1012)
.+..+.-.|.+.++++++.+ +.+++++.|+.+++|++...... . .....
T Consensus 182 hCf~Thvd~r~Eiw~l~~~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r 257 (888)
T KOG0306|consen 182 HCFETHVDHRGEIWALVLDE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDR 257 (888)
T ss_pred eeeeEEecccceEEEEEEec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCccc
Confidence 89999999999999999865 57999999999999998210000 0 00000
Q ss_pred --------------------------------------------------------------CCcEEEEEEccCCC---e
Q 001790 538 --------------------------------------------------------------GHWCTTMLYSADGS---R 552 (1012)
Q Consensus 538 --------------------------------------------------------------~~~v~~~~~s~~~~---~ 552 (1012)
...+.++.|.|.+. .
T Consensus 258 ~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~ 337 (888)
T KOG0306|consen 258 FLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENT 337 (888)
T ss_pred EEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCccee
Confidence 11234444444332 1
Q ss_pred EEEeeecCCCCCcEEEEeCCCCeee---------eeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEE
Q 001790 553 LFSCGTSKDGDSFLVEWNESEGTIK---------RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST 623 (1012)
Q Consensus 553 l~~~~~~~~~~~~i~lwd~~~~~~~---------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (1012)
|+.. .++.+..|.+...... ..+.+|.. .|..++++.+...+++|+ .+.+.+|+..+.+++.++
T Consensus 338 lv~l-----~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~-dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi 410 (888)
T KOG0306|consen 338 LVLL-----ANNTVEWYSLENSGKTSPEADRTSNIEIGGHRS-DVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTI 410 (888)
T ss_pred EEEe-----ecCceEEEEeccCCCCCccccccceeeeccchh-heeEEEeecCceeeeecC-CCcEEEEEccCcceeEEe
Confidence 2221 2445555555431111 23445655 688888887765555544 457888888888888887
Q ss_pred ecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeeccccccccccCCCCCccc
Q 001790 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKV 703 (1012)
Q Consensus 624 ~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~ 703 (1012)
... .+.+..|-|.++++++|...|.+.+||+.+.. ....
T Consensus 411 ~~~----y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~-l~Et------------------------------------ 449 (888)
T KOG0306|consen 411 TCG----YILASKFVPGDRYIVLGTKNGELQVFDLASAS-LVET------------------------------------ 449 (888)
T ss_pred ccc----cEEEEEecCCCceEEEeccCCceEEEEeehhh-hhhh------------------------------------
Confidence 643 46777888888888888888888888876541 1100
Q ss_pred cccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEee
Q 001790 704 ERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG 783 (1012)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~ 783 (1012)
+ ..|.+.|++++.+||++.+++++
T Consensus 450 -----------------------------------------------------i---~AHdgaIWsi~~~pD~~g~vT~s 473 (888)
T KOG0306|consen 450 -----------------------------------------------------I---RAHDGAIWSISLSPDNKGFVTGS 473 (888)
T ss_pred -----------------------------------------------------h---hccccceeeeeecCCCCceEEec
Confidence 0 12888999999999999999999
Q ss_pred ccCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEEEc-CCcEEEEEcCCC
Q 001790 784 SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTF 862 (1012)
Q Consensus 784 ~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~lwd~~~~ 862 (1012)
.|.+|++||+....- ..|.. -++..+... +.+ ...+.|.|+.+||||++||++- |+++++|-+++.
T Consensus 474 aDktVkfWdf~l~~~-~~gt~-----~k~lsl~~~----rtL---el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl 540 (888)
T KOG0306|consen 474 ADKTVKFWDFKLVVS-VPGTQ-----KKVLSLKHT----RTL---ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL 540 (888)
T ss_pred CCcEEEEEeEEEEec-cCccc-----ceeeeeccc----eEE---eccccEEEEEEcCCCcEEEEEeccCeEEEEEecce
Confidence 999999998764322 11110 000011111 111 2577899999999999999998 999999999999
Q ss_pred eEEEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeEEecccCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 001790 863 KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942 (1012)
Q Consensus 863 ~~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~vw 942 (1012)
+....+.||.-+|.||..|| |++++++|+.|++|+||-++-|.|.+.+.+|.+.|.+|.|.|...+++++|.|+.|+-|
T Consensus 541 KFflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqW 619 (888)
T KOG0306|consen 541 KFFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQW 619 (888)
T ss_pred eeeeeecccccceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEee
Confidence 99999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCccccEEEecCCCCCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCC
Q 001790 943 SIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASK 993 (1012)
Q Consensus 943 d~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~-~d~~i~vwd~~~ 993 (1012)
|-+..+. ++...+|. ..|++++.+|+|.+++++ +|.+|++|....
T Consensus 620 Dg~kFe~-----iq~L~~H~-~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 620 DGEKFEE-----IQKLDGHH-SEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred chhhhhh-----heeeccch-heeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 9988774 44556776 899999999999999998 699999999655
No 9
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.3e-47 Score=387.08 Aligned_cols=544 Identities=15% Similarity=0.263 Sum_probs=423.7
Q ss_pred EEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEECCCeE
Q 001790 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLI 430 (1012)
Q Consensus 351 ~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~v 430 (1012)
.-.|.|..+|.+.+ ..|.+-++++.... .++.+|...++-..|||.|-|+|+|...|+|
T Consensus 25 g~dpkgd~ilY~nG--ksv~ir~i~~~~~~-------------------~iYtEH~~~vtVAkySPsG~yiASGD~sG~v 83 (603)
T KOG0318|consen 25 GGDPKGDNILYTNG--KSVIIRNIDNPASV-------------------DIYTEHAHQVTVAKYSPSGFYIASGDVSGKV 83 (603)
T ss_pred ccCCCCCeEEEeCC--CEEEEEECCCccce-------------------eeeccccceeEEEEeCCCceEEeecCCcCcE
Confidence 34667777777654 57777788766543 3488899999999999999999999999999
Q ss_pred EEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcC--C--CcEEEEeCCCcceeeecCCccCEEEEeccccC
Q 001790 431 QLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD--D--KLIKVWELSGRKLFNFEGHEAPVYSICPHHKE 506 (1012)
Q Consensus 431 ~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~--d--~~v~vwd~~~~~~~~~~~h~~~v~~~~~~~~~ 506 (1012)
||||....+.+ ...+++.-.++|.+++|+.|+++ ++..++ + |.+.+|| +|..+..+.||...|+++.|-|+.
T Consensus 84 RIWdtt~~~hi-LKnef~v~aG~I~Di~Wd~ds~R--I~avGEGrerfg~~F~~D-SG~SvGei~GhSr~ins~~~KpsR 159 (603)
T KOG0318|consen 84 RIWDTTQKEHI-LKNEFQVLAGPIKDISWDFDSKR--IAAVGEGRERFGHVFLWD-SGNSVGEITGHSRRINSVDFKPSR 159 (603)
T ss_pred EEEeccCccee-eeeeeeecccccccceeCCCCcE--EEEEecCccceeEEEEec-CCCccceeeccceeEeeeeccCCC
Confidence 99998764333 22357778899999999999994 554443 3 3455666 677788999999999999998775
Q ss_pred CceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeec---CC
Q 001790 507 NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA---GF 583 (1012)
Q Consensus 507 ~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~---~~ 583 (1012)
. -.+++|++|++|.+|+-...+-...+..|...|.++.|+|||.++++.+. |+.+.+||-.+|+.+..+. +|
T Consensus 160 P-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~~aH 234 (603)
T KOG0318|consen 160 P-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDSDAH 234 (603)
T ss_pred c-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCCCCc
Confidence 4 57999999999999976666666777888889999999999999999994 9999999999999999998 66
Q ss_pred CCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCC-CCcceeEeecCCCEEEEEECCCcEEEEEccCCc
Q 001790 584 RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL-PNLPRLRFSKEGNLLAVTTADNGFKILANAIGL 662 (1012)
Q Consensus 584 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~ 662 (1012)
.+ .|..++|+||+..+++++.|.+++|||+.+.+++.++...... ..-..+.|. +..|++.+.+|+|.+++.....
T Consensus 235 kG-sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~ 311 (603)
T KOG0318|consen 235 KG-SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPS 311 (603)
T ss_pred cc-cEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCC
Confidence 55 8999999999999999999999999999999999998765431 122344554 5689999999999999998875
Q ss_pred eeeecccCCccccccCccceeeeccccccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcc
Q 001790 663 RSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQ 742 (1012)
Q Consensus 663 ~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~ 742 (1012)
....+.+| ...|++++.+++++++ ++++.||.|.-|+
T Consensus 312 -~~~~i~GH-----nK~ITaLtv~~d~~~i-------------------------------------~SgsyDG~I~~W~ 348 (603)
T KOG0318|consen 312 -VLKVISGH-----NKSITALTVSPDGKTI-------------------------------------YSGSYDGHINSWD 348 (603)
T ss_pred -hhheeccc-----ccceeEEEEcCCCCEE-------------------------------------EeeccCceEEEEe
Confidence 66666664 4468888888776554 7899999999999
Q ss_pred eeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeeccCeeEeeeccccccCCCCCccccccceeeccCCCceee
Q 001790 743 LAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA 822 (1012)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 822 (1012)
...+.... +.- ..|...|.+++.+..+. +++.+.|.++++.++.......... .
T Consensus 349 ~~~g~~~~----~~g---~~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~~-----------------~- 402 (603)
T KOG0318|consen 349 SGSGTSDR----LAG---KGHTNQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSEV-----------------V- 402 (603)
T ss_pred cCCccccc----ccc---ccccceEEEEeecCCCc-EEEEecCCeEEEEecccCcccccce-----------------e-
Confidence 87543221 111 34899999999887665 7888888899998765433211110 0
Q ss_pred ecccCCCCCCCEeEEEEeeCCCEEEEEcCCcEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEc
Q 001790 823 NDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNV 902 (1012)
Q Consensus 823 ~~~~~~~~~~~v~~~~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~ 902 (1012)
. ......+++..+||..++.++++.|.+..-.++- .+.. -.-...+++++| ++..+|+|+.|+.|+||.+
T Consensus 403 -~-----lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~--~~~~-~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl 472 (603)
T KOG0318|consen 403 -K-----LGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKV--SSIP-IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSL 472 (603)
T ss_pred -e-----cCCCceeEEEcCCCCEEEEEecCcEEEEecCCcc--eeec-cccccceEEEcC-CCCEEEEecccceEEEEEe
Confidence 0 2223338899999988888887666666532221 2222 223468899999 9999999999999999999
Q ss_pred cCCeE--eEEecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCccccEEEecCCCCCCCCceEEEEcCCCCEEEE
Q 001790 903 RVDEV--KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV 980 (1012)
Q Consensus 903 ~~~~~--~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~ 980 (1012)
..+.. ...+..|.++|+++++|||+.+||++...+.+.+||+.+.+..... ..-|+ +.|.+++|+|++.++|+
T Consensus 473 ~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~----w~FHt-akI~~~aWsP~n~~vAT 547 (603)
T KOG0318|consen 473 SGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNR----WAFHT-AKINCVAWSPNNKLVAT 547 (603)
T ss_pred cCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecce----eeeee-eeEEEEEeCCCceEEEe
Confidence 87653 3345679999999999999999999999999999999998752221 11133 88999999999999999
Q ss_pred Ee-CCeEEEEECCCceEEEeecC---CCeeEEEec
Q 001790 981 VH-ETQLAIYDASKMERIRQVGS---PHICSIIFC 1011 (1012)
Q Consensus 981 ~~-d~~i~vwd~~~~~~~~~~~~---~~i~~~~f~ 1011 (1012)
|+ |..|.||+++.....-.+.+ ..|+.++|-
T Consensus 548 GSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wl 582 (603)
T KOG0318|consen 548 GSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWL 582 (603)
T ss_pred ccccceEEEEEccChhhheEeccccccCceeEEEe
Confidence 95 99999999998765544444 458888874
No 10
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-47 Score=402.95 Aligned_cols=521 Identities=15% Similarity=0.235 Sum_probs=416.9
Q ss_pred ccceEeecCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEE
Q 001790 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1012)
Q Consensus 335 ~~~~~~~~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 414 (1012)
..+++.+.-+.+|.|+.|||||+ ++|+|. .+.+.||.......- .+. +-...+.+.||-..|.++.|
T Consensus 87 r~Vlh~f~fk~~v~~i~fSPng~-~fav~~-gn~lqiw~~P~~~~~---~~~--------pFvl~r~~~g~fddi~si~W 153 (893)
T KOG0291|consen 87 RSVLHRFNFKRGVGAIKFSPNGK-FFAVGC-GNLLQIWHAPGEIKN---EFN--------PFVLHRTYLGHFDDITSIDW 153 (893)
T ss_pred ceeeEEEeecCccceEEECCCCc-EEEEEe-cceeEEEecCcchhc---ccC--------cceEeeeecCCccceeEEEe
Confidence 55667777889999999999999 577665 679999987543221 111 11244678899999999999
Q ss_pred ccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEeCC-----------
Q 001790 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELS----------- 483 (1012)
Q Consensus 415 spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd~~----------- 483 (1012)
|.|.++|++|+.|.+++||+++..+.+.. ..+.+|...|.++-|..+.. -+++.+.||.+.+|..+
T Consensus 154 s~DSr~l~~gsrD~s~rl~~v~~~k~~~~-~~l~gHkd~VvacfF~~~~~--~l~tvskdG~l~~W~~~~~P~~~~~~~k 230 (893)
T KOG0291|consen 154 SDDSRLLVTGSRDLSARLFGVDGNKNLFT-YALNGHKDYVVACFFGANSL--DLYTVSKDGALFVWTCDLRPPELDKAEK 230 (893)
T ss_pred ccCCceEEeccccceEEEEEeccccccce-EeccCCCcceEEEEeccCcc--eEEEEecCceEEEEEecCCCcccccccc
Confidence 99999999999999999999998776443 35889999999999999888 79999999999999822
Q ss_pred -------------Ccc-----e------eeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCC
Q 001790 484 -------------GRK-----L------FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH 539 (1012)
Q Consensus 484 -------------~~~-----~------~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~ 539 (1012)
++. . .-+......|++.+||+.. ..|++|-..|...+|.+.....+..+.....
T Consensus 231 d~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t--~~lvvgFssG~f~LyelP~f~lih~LSis~~ 308 (893)
T KOG0291|consen 231 DEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGT--NLLVVGFSSGEFGLYELPDFNLIHSLSISDQ 308 (893)
T ss_pred cccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCc--eEEEEEecCCeeEEEecCCceEEEEeecccc
Confidence 111 0 1112223678889998744 6899999999999999999999999988889
Q ss_pred cEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCee
Q 001790 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI 619 (1012)
Q Consensus 540 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (1012)
+|..++|+..|.+|+.++. +-|.+.+|+.++...+...++|.. .+.+++++|||+++++|++||.|+|||..++-+
T Consensus 309 ~I~t~~~N~tGDWiA~g~~---klgQLlVweWqsEsYVlKQQgH~~-~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC 384 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCS---KLGQLLVWEWQSESYVLKQQGHSD-RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC 384 (893)
T ss_pred eeeEEEecccCCEEEEcCC---ccceEEEEEeeccceeeecccccc-ceeeEEECCCCcEEEeccCCCcEEEEeccCceE
Confidence 9999999999999999986 678999999999999999999987 899999999999999999999999999999999
Q ss_pred EEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeeccccccccccCCCC
Q 001790 620 LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPA 699 (1012)
Q Consensus 620 ~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~ 699 (1012)
..++..| ...|+.+.|+..|+.+++.+-||+||.||+... +..+++..
T Consensus 385 ~vTFteH--ts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY-rNfRTft~----------------------------- 432 (893)
T KOG0291|consen 385 FVTFTEH--TSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY-RNFRTFTS----------------------------- 432 (893)
T ss_pred EEEeccC--CCceEEEEEEecCCEEEEeecCCeEEeeeeccc-ceeeeecC-----------------------------
Confidence 9999855 458999999999999999999999999998654 22322221
Q ss_pred CccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceE
Q 001790 700 NCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGL 779 (1012)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 779 (1012)
| ..-...+++..|.|..+
T Consensus 433 ----------------------------------------------------------P----~p~QfscvavD~sGelV 450 (893)
T KOG0291|consen 433 ----------------------------------------------------------P----EPIQFSCVAVDPSGELV 450 (893)
T ss_pred ----------------------------------------------------------C----CceeeeEEEEcCCCCEE
Confidence 1 22345678888999988
Q ss_pred EEeeccC-eeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEEEc-CCcEEEE
Q 001790 780 LALGSNG-VQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLF 857 (1012)
Q Consensus 780 ~~~~~dg-~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~lw 857 (1012)
++|+.|. .|.+| +.++|+++. .+.| |.++|.+++|+|+|..||+++ |.+|++|
T Consensus 451 ~AG~~d~F~IfvW----------------------S~qTGqllD-iLsG--HEgPVs~l~f~~~~~~LaS~SWDkTVRiW 505 (893)
T KOG0291|consen 451 CAGAQDSFEIFVW----------------------SVQTGQLLD-ILSG--HEGPVSGLSFSPDGSLLASGSWDKTVRIW 505 (893)
T ss_pred EeeccceEEEEEE----------------------EeecCeeee-hhcC--CCCcceeeEEccccCeEEeccccceEEEE
Confidence 8888773 34454 556666554 3566 999999999999999999999 9999999
Q ss_pred EcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeEEecc--------------------cCCC
Q 001790 858 NMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKG--------------------HQKR 917 (1012)
Q Consensus 858 d~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~~~~--------------------h~~~ 917 (1012)
|+-......+--.+...+..++|+| +|+-||+++-||.|.+||...+..+..+.+ ....
T Consensus 506 ~if~s~~~vEtl~i~sdvl~vsfrP-dG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~ 584 (893)
T KOG0291|consen 506 DIFSSSGTVETLEIRSDVLAVSFRP-DGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKT 584 (893)
T ss_pred EeeccCceeeeEeeccceeEEEEcC-CCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCc
Confidence 9865533333333666799999999 999999999999999999987766544332 2356
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCccccEEEecC------------------------CC-------------
Q 001790 918 ITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIP------------------------AG------------- 960 (1012)
Q Consensus 918 V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~------------------------~~------------- 960 (1012)
.+.+++|+||..+++||..+.|++|++.++-.++.+.+... ..
T Consensus 585 Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~l 664 (893)
T KOG0291|consen 585 FTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIAL 664 (893)
T ss_pred eEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccC
Confidence 88999999999999999999999999988655543322100 00
Q ss_pred -------------CCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEE
Q 001790 961 -------------KTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERI 997 (1012)
Q Consensus 961 -------------~~~~~v~~l~fs~d~~~l~~~~d~~i~vwd~~~~~~~ 997 (1012)
...-.|.++.|||.|+.++++.-..+.||.+.+.-..
T Consensus 665 pG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaatTEGl~IYsld~~~~F 714 (893)
T KOG0291|consen 665 PGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATTEGLLIYSLDTTILF 714 (893)
T ss_pred CccccCCccccccCceEEEEEEEECCCcCeeeeecccceEEEecCCceEE
Confidence 0002468899999999999987677889988775543
No 11
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-48 Score=379.29 Aligned_cols=365 Identities=19% Similarity=0.292 Sum_probs=297.6
Q ss_pred eccCCCcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEE
Q 001790 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1012)
Q Consensus 401 ~~~~h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vw 480 (1012)
.+.||.++|.|++|+|+|+.||+|+.|.++++||+.+..+.. +.++|...|.|++|+|||+ .||+|+.||+|++|
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLW 184 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEe
Confidence 378899999999999999999999999999999999977666 7899999999999999999 89999999999999
Q ss_pred e-CCCcce-eeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeee
Q 001790 481 E-LSGRKL-FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1012)
Q Consensus 481 d-~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 558 (1012)
| .+|+++ ..+.+|...|++++|.|-. ..|..+++++++
T Consensus 185 dpktg~~~g~~l~gH~K~It~Lawep~h---------------------------------------l~p~~r~las~s- 224 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHKKWITALAWEPLH---------------------------------------LVPPCRRLASSS- 224 (480)
T ss_pred cCCCCCcccccccCcccceeEEeecccc---------------------------------------cCCCccceeccc-
Confidence 9 666655 7899999999999986632 125556777777
Q ss_pred cCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEee
Q 001790 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1012)
Q Consensus 559 ~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1012)
+||.++|||+..+.++..+.+|+. +|+|++|..+ .++++|+.|++|++|+...|.+...+..|++ .|+.++.+
T Consensus 225 ---kDg~vrIWd~~~~~~~~~lsgHT~-~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lals 297 (480)
T KOG0271|consen 225 ---KDGSVRIWDTKLGTCVRTLSGHTA-SVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLALS 297 (480)
T ss_pred ---CCCCEEEEEccCceEEEEeccCcc-ceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccch--heeeeecc
Confidence 588899999999999999999998 8999999765 5899999999999999999999999998777 78888877
Q ss_pred cCCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeeccccccccccCCCCCccccccCCCCCCccccCC
Q 001790 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGV 718 (1012)
Q Consensus 639 ~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1012)
.+- .|-+| +|.|.|+..
T Consensus 298 Tdy-~LRtg------------------------------------af~~t~~~~-------------------------- 314 (480)
T KOG0271|consen 298 TDY-VLRTG------------------------------------AFDHTGRKP-------------------------- 314 (480)
T ss_pred chh-hhhcc------------------------------------ccccccccC--------------------------
Confidence 652 11111 111111110
Q ss_pred CCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeeccCeeEeeecccccc
Q 001790 719 DPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQ 798 (1012)
Q Consensus 719 ~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~ 798 (1012)
+ .++ +.+ ...
T Consensus 315 --------------------~-------------------------------~~s-e~~-------~~A----------- 324 (480)
T KOG0271|consen 315 --------------------K-------------------------------SFS-EEQ-------KKA----------- 324 (480)
T ss_pred --------------------C-------------------------------ChH-HHH-------HHH-----------
Confidence 0 000 000 000
Q ss_pred CCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEEEc-CCcEEEEEcCC-CeEEEEEcCCCCCee
Q 001790 799 NPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMT-FKVMTTFMSPPPAST 876 (1012)
Q Consensus 799 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~lwd~~~-~~~~~~~~~~~~~i~ 876 (1012)
..-| . .+.-..+..+++|+ |.++.+|+... .+++..+.+|...|+
T Consensus 325 -----------l~rY------------------~----~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn 371 (480)
T KOG0271|consen 325 -----------LERY------------------E----AVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVN 371 (480)
T ss_pred -----------HHHH------------------H----HhhccCcceeEEecCCceEEEecccccccchhhhhchhhhee
Confidence 0000 0 00112357899998 78999998764 457888999999999
Q ss_pred EEEEecCCCcEEEEEeCCCeEEEEEccCCeEeEEecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCccccEEEe
Q 001790 877 FLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIH 956 (1012)
Q Consensus 877 ~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~ 956 (1012)
.+.||| |++++|+++-|+.|++||..+|+.+.+|+||-+.|+.++||.|.++|+++|.|.++++|++++.+.. .
T Consensus 372 ~V~fSP-d~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~-----~ 445 (480)
T KOG0271|consen 372 HVSFSP-DGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLK-----Q 445 (480)
T ss_pred eEEECC-CccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeec-----c
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999997632 2
Q ss_pred cCCCCCCCCceEEEEcCCCCEEEEE-eCCeEEEEE
Q 001790 957 IPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYD 990 (1012)
Q Consensus 957 ~~~~~~~~~v~~l~fs~d~~~l~~~-~d~~i~vwd 990 (1012)
-..||. .+|.++.|+|||..+++| .|..+++|.
T Consensus 446 DLpGh~-DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 446 DLPGHA-DEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred cCCCCC-ceEEEEEecCCCceeecCCCceEEEeec
Confidence 334555 899999999999999998 799999995
No 12
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.2e-45 Score=385.85 Aligned_cols=475 Identities=15% Similarity=0.215 Sum_probs=387.1
Q ss_pred ccccCCCCCccceEeec-CCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccC
Q 001790 326 QTWSLDDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1012)
Q Consensus 326 ~~~~~~~~~~~~~~~~~-h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1012)
++|+...- ....++. |+..|+++.|...|. .||+|+.|+.|.+||+-....+.. +.|
T Consensus 90 qif~~~s~--~~~~tfngHK~AVt~l~fd~~G~-rlaSGskDt~IIvwDlV~E~Gl~r-------------------L~G 147 (888)
T KOG0306|consen 90 QIFSLESE--EILITFNGHKAAVTTLKFDKIGT-RLASGSKDTDIIVWDLVGEEGLFR-------------------LRG 147 (888)
T ss_pred EeeccCCC--ceeeeecccccceEEEEEcccCc-eEeecCCCccEEEEEeccceeeEE-------------------eec
Confidence 36666543 4555554 999999999999999 599999999999999987665543 899
Q ss_pred CCcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEeC--
Q 001790 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-- 482 (1012)
Q Consensus 405 h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd~-- 482 (1012)
|.+.|+..-|..+.+++++.+.|+.|++||+++..+.. +.-.|.+.|+++++.+ + .+++++.|+.+++|+.
T Consensus 148 Hkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~---Thvd~r~Eiw~l~~~~--~--~lvt~~~dse~~v~~L~~ 220 (888)
T KOG0306|consen 148 HKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFE---THVDHRGEIWALVLDE--K--LLVTAGTDSELKVWELAF 220 (888)
T ss_pred chHHHhHHhccCCCeEEEEeccCceEEEEecccceeee---EEecccceEEEEEEec--c--eEEEEecCCceEEEEeec
Confidence 99999999999999999999999999999999988776 5678999999999987 4 7888999999999983
Q ss_pred -CCc----------------------ceeeec------------------------------------------------
Q 001790 483 -SGR----------------------KLFNFE------------------------------------------------ 491 (1012)
Q Consensus 483 -~~~----------------------~~~~~~------------------------------------------------ 491 (1012)
+.+ .+....
T Consensus 221 ~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~ 300 (888)
T KOG0306|consen 221 EDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENE 300 (888)
T ss_pred ccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccc
Confidence 110 110000
Q ss_pred -----------------CCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCce---------eeecCCCCcEEEEE
Q 001790 492 -----------------GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR---------VDYDAPGHWCTTML 545 (1012)
Q Consensus 492 -----------------~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~---------~~~~~~~~~v~~~~ 545 (1012)
.-...+.++.|.+.+.....+..-.++++..|.++..... ..+.+|...|.+++
T Consensus 301 ~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~ 380 (888)
T KOG0306|consen 301 DDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLC 380 (888)
T ss_pred cchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEE
Confidence 0122344555555544432222256778888877663333 45677888999999
Q ss_pred EccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEec
Q 001790 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1012)
Q Consensus 546 ~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1012)
+|.+...+++++ .+.+.+|+..+.++++++... .+.+..|.|.++++++|...|.+.+||+.+...+..+..
T Consensus 381 vS~d~~~~~Sga-----~~SikiWn~~t~kciRTi~~~---y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~A 452 (888)
T KOG0306|consen 381 VSSDSILLASGA-----GESIKIWNRDTLKCIRTITCG---YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRA 452 (888)
T ss_pred eecCceeeeecC-----CCcEEEEEccCcceeEEeccc---cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhc
Confidence 999999888886 788999999999999999864 678899999999999999999999999999999988885
Q ss_pred CCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeeccccccccccCCCCCccccc
Q 001790 626 EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVER 705 (1012)
Q Consensus 626 ~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~ 705 (1012)
|. +.++.++.+||+..+++|+.|.+|++||..-- ....+..
T Consensus 453 Hd--gaIWsi~~~pD~~g~vT~saDktVkfWdf~l~----~~~~gt~--------------------------------- 493 (888)
T KOG0306|consen 453 HD--GAIWSISLSPDNKGFVTGSADKTVKFWDFKLV----VSVPGTQ--------------------------------- 493 (888)
T ss_pred cc--cceeeeeecCCCCceEEecCCcEEEEEeEEEE----eccCccc---------------------------------
Confidence 54 48999999999999999999999999997421 1100000
Q ss_pred cCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeecc
Q 001790 706 SSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSN 785 (1012)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 785 (1012)
.+ +.. -.+.+.+. -...|.++.+||||++|+++--|
T Consensus 494 ------------------------------~k--~ls------l~~~rtLe------l~ddvL~v~~Spdgk~LaVsLLd 529 (888)
T KOG0306|consen 494 ------------------------------KK--VLS------LKHTRTLE------LEDDVLCVSVSPDGKLLAVSLLD 529 (888)
T ss_pred ------------------------------ce--eee------eccceEEe------ccccEEEEEEcCCCcEEEEEecc
Confidence 00 000 01112222 34589999999999999999999
Q ss_pred CeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEEEc-CCcEEEEEcCCCeE
Q 001790 786 GVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKV 864 (1012)
Q Consensus 786 g~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~lwd~~~~~~ 864 (1012)
.++++|-+++-++ ...+.| |.-+|.|+.+|||++.+++|+ |..|++|-++-|.|
T Consensus 530 nTVkVyflDtlKF-----------------------flsLYG--HkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDC 584 (888)
T KOG0306|consen 530 NTVKVYFLDTLKF-----------------------FLSLYG--HKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDC 584 (888)
T ss_pred CeEEEEEecceee-----------------------eeeecc--cccceeEEeccCCcCeEEeccCCCceEEeccccchh
Confidence 9999997765433 112444 999999999999999999999 99999999999999
Q ss_pred EEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeEEecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001790 865 MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSI 944 (1012)
Q Consensus 865 ~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~ 944 (1012)
.+.+-+|.+.|.++.|.| ....+.+++.|+.|+-||-...++++.+.+|...|.|++.+|+|.+++|+|.|..|++|.-
T Consensus 585 HKS~fAHdDSvm~V~F~P-~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 585 HKSFFAHDDSVMSVQFLP-KTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWER 663 (888)
T ss_pred hhhhhcccCceeEEEEcc-cceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeec
Confidence 999999999999999999 8899999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 001790 945 DT 946 (1012)
Q Consensus 945 ~~ 946 (1012)
..
T Consensus 664 td 665 (888)
T KOG0306|consen 664 TD 665 (888)
T ss_pred cC
Confidence 65
No 13
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.6e-42 Score=369.60 Aligned_cols=544 Identities=17% Similarity=0.254 Sum_probs=359.9
Q ss_pred chHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCC--------HHHHH---------------------------------
Q 001790 4 LSRELVFLILQFLEEEKFKESVHKLEKESGFFFN--------MKYFE--------------------------------- 42 (1012)
Q Consensus 4 ~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~--------~~~~~--------------------------------- 42 (1012)
..+++++.+++||+..||+++.+.|.+|.++... .+-+|
T Consensus 20 ~~~~~n~~v~~yl~~~~y~~te~~l~~e~~l~s~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 99 (707)
T KOG0263|consen 20 HTRDLNRIVLEYLRKKKYSRTEEMLRQEANLPSRPVNGMPAEPDYDREQFEALPPIGLPKENADDETPQGLSSSAVPVEK 99 (707)
T ss_pred chHHHHHHHHHHHhhhcccccchhhhhhhcccccccCCCccccchhhhhhhccCCccccccccCCcccccccccCchhhh
Confidence 4679999999999999999999999999774331 11111
Q ss_pred H--Hh--hccCHHHHHHHHcCCCCCCCcccc---hhHHHHHHHhHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHH
Q 001790 43 E--KV--QAGDWDEVEKYLSGFTKVDDNRYS---MKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEI 115 (1012)
Q Consensus 43 ~--~i--~~g~w~~~~~~l~~~~~~~~~~~~---~~~~~~i~~~~~~ell~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l 115 (1012)
+ .+ ..-+++.+...++.+..-+.+..+ ..++|+|+-|.||+|++....+.|..|+.+.---++..+.+.+.+|
T Consensus 100 ~~~~~~~~~~~ye~~y~~lk~~ve~Sldi~k~El~~iLypifv~~yldl~~~~~~~~a~~Ffe~f~~d~~~~~~e~i~~l 179 (707)
T KOG0263|consen 100 ALWSAEEIPDQYEHVYSELKTWVEDSLDIYKAELSPILYPIFVHSYLDLVQKSAYETAKSFFERFRGDHKVYHSESIFQL 179 (707)
T ss_pred ccccccCCChhHhhhhhhcchhhhCcchhhhHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHhccchhhhhhHHHHHH
Confidence 0 00 112345555555555333322211 2299999999999999999999999999764333346678888888
Q ss_pred HHhhcccCccchhhhcccCCc----hHHHHHHHHHHHhhccCCccccccccCCCCchhHHHHHHHHHHHHHHhcCCCCCC
Q 001790 116 TQLLTLSNFRENEQLSKYGDT----KTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLNWQHQLCKNPRA 191 (1012)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~----~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~~~~~~q~~~~~~~~~ 191 (1012)
..+-...++.+++....+... .-+| ..++.|.+++.+... +-..-+..+|+|.+.-++..-...+.
T Consensus 180 ~~~~~~~~i~~ne~~~~~~~~ky~i~~sr-~s~~lL~~~l~~~~~---------~~g~~i~~ii~~hldi~v~~~~~~r~ 249 (707)
T KOG0263|consen 180 LSLETIKHIKENETARAFRKNKYVIRLSR-DSFDLLLRFLQEDNN---------IGGTIIIKIINQHLDIDVFDGVMARR 249 (707)
T ss_pred HhhhhHHHHhhhhhHHHHhhCcEEEEecH-HHHHHHHHHhhhhcc---------ccchHHHHHHHHHhCccccccccccc
Confidence 888877777777665544331 1122 112233333333332 33345677777777666543211111
Q ss_pred CCC--------CccccccccCCCCCCCCCCCCCCCCcccCCCCCCCCC----CCCCCCCCCCccccchhhhhhhhccCCC
Q 001790 192 NPD--------IKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYAS----LGTHSPFPPTAAAANANALAGWMANASA 259 (1012)
Q Consensus 192 ~~~--------~~sl~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (1012)
... ++++ ..+.-...+ -.+. ..++++....+.. ..+-.+ .+.++..+
T Consensus 250 ~~~~~~~~g~~~~~i-~g~~~~e~~----~~~~--~l~~~~~e~~~~~~~~~~~e~~D------~~~~~~~~-------- 308 (707)
T KOG0263|consen 250 TTKPTAMVGSEQESI-AGEAKREIN----KQKV--QLGLLLKEEEIEKKLPILLEVED------DPNEPDNE-------- 308 (707)
T ss_pred cccchhhcccccccc-cccchhhcc----ccee--eecccccchhhhhcccccccCcc------cccccccc--------
Confidence 000 0000 010000000 0000 0011111100000 000000 00000000
Q ss_pred CcccccccccCCCCCCCCCccccccC------CC---CCCCCCccccCCCChhhHhhhcCCCCCCccccccCCCcccccC
Q 001790 260 SSSVQAAVVTASSIPVPQNQVSVLKH------PR---TPPTPGMVDYQNPDHEQLMKRLRPAPSAEEVTYSSSRHQTWSL 330 (1012)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (1012)
.+..|.....+.+. ++ .-+.|+.-... ....+..+++. ...+ ...-
T Consensus 309 ------------~~~~~~~~~~~~~~k~~d~~~ps~d~iPlPp~~~~d---~~~~~~~l~d~--~kr~--------~l~~ 363 (707)
T KOG0263|consen 309 ------------KLKKPKKKKLLSEEKKRDPNAPSRDRIPLPPLKQVD---KLAELEALKDE--QKRV--------KLGR 363 (707)
T ss_pred ------------ccccchhhhhhhhhhccccCCCccccCCCCcccchh---HHHHHHHHHHH--HHHh--------hcCC
Confidence 00000000000000 00 00001111111 12222222221 0111 2234
Q ss_pred CCCCccceEeec-CCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCcee--------cccc-----cccccccccCcc
Q 001790 331 DDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRL--------VSKP-----FKIWDMAACSLP 396 (1012)
Q Consensus 331 ~~~~~~~~~~~~-h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~--------~~~~-----~~~~~~~~~~~~ 396 (1012)
..+|..+++++. ....++|+.||+|++ +||.|..|..|++|.+...+.. .... +. .++.+....
T Consensus 364 ~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~-~~~~D~~~~ 441 (707)
T KOG0263|consen 364 NSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVD-VDMLDDDSS 441 (707)
T ss_pred CCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchh-hhhccccCC
Confidence 567788999988 567899999999999 8999999999999999853311 1010 00 122222233
Q ss_pred ccceeccCCCcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCc
Q 001790 397 FQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (1012)
Q Consensus 397 ~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~ 476 (1012)
...+.+.||.++|..+.|+|+.++|++|+.|++||+|.+.+..++. .+.||..+|+++.|+|-|- +|||+|.|++
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~t 516 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQT 516 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCce
Confidence 3445699999999999999999999999999999999999987776 5779999999999999998 8999999999
Q ss_pred EEEEe-CCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEE
Q 001790 477 IKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1012)
Q Consensus 477 v~vwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 555 (1012)
.++|. ....+++.+.+|-+.|.|+.|||+ ..++++||.|.+||+||+.++..+..+.+|.++|.+++|||+|++|++
T Consensus 517 ArLWs~d~~~PlRifaghlsDV~cv~FHPN--s~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaS 594 (707)
T KOG0263|consen 517 ARLWSTDHNKPLRIFAGHLSDVDCVSFHPN--SNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLAS 594 (707)
T ss_pred eeeeecccCCchhhhcccccccceEEECCc--ccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEee
Confidence 99999 888999999999999999999995 479999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 001790 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (1012)
Q Consensus 556 ~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 617 (1012)
|+ .++.|.+||+.++..+..+.+|.+ .+.++.|+.+|..|++|+.|++|++||+..-
T Consensus 595 g~----ed~~I~iWDl~~~~~v~~l~~Ht~-ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 595 GD----EDGLIKIWDLANGSLVKQLKGHTG-TIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cc----cCCcEEEEEcCCCcchhhhhcccC-ceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 98 599999999999999999999955 9999999999999999999999999998653
No 14
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.9e-42 Score=345.35 Aligned_cols=302 Identities=18% Similarity=0.285 Sum_probs=257.6
Q ss_pred CCccceEeecCCCceEEEEEecCCCcEEEEecCCCeEEEEEccC--CceecccccccccccccCccccceeccC----CC
Q 001790 333 LPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAM--RDRLVSKPFKIWDMAACSLPFQASIFKD----VP 406 (1012)
Q Consensus 333 ~~~~~~~~~~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~ 406 (1012)
.|....+.++|+.+|.+++|+|-..-++++|+.|-+.++|++.. ........++ ....+.+ ..
T Consensus 167 I~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lr-----------h~~~~~~~s~~~n 235 (524)
T KOG0273|consen 167 IPSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLR-----------HCIREGGKSVPSN 235 (524)
T ss_pred ccccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhh-----------hhhhhhcccCCcc
Confidence 34566677779999999999997765799999999999999864 1111100000 0000111 23
Q ss_pred cceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCc
Q 001790 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (1012)
Q Consensus 407 ~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~ 485 (1012)
..|++++|+.+|..||+|+.||.++||+...+. +. ++..|.++|.++.|+.+|. +|++++.|+++.+|| .+|.
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~ 309 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGT 309 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCce
Confidence 579999999999999999999999999988743 33 5888999999999999999 899999999999999 9999
Q ss_pred ceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCc
Q 001790 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1012)
Q Consensus 486 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 565 (1012)
..+.+.-|..+-..+.|-.. .-+++++.||.|+++.+....+..++.+|.+.|.++.|.|.|.+|++++ .|++
T Consensus 310 ~~q~f~~~s~~~lDVdW~~~---~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~S----dD~T 382 (524)
T KOG0273|consen 310 VKQQFEFHSAPALDVDWQSN---DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCS----DDGT 382 (524)
T ss_pred EEEeeeeccCCccceEEecC---ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEec----CCCe
Confidence 99999989888666777432 4799999999999999999999999999999999999999999999999 4999
Q ss_pred EEEEeCCCCeeeeeecCCCCCcceEEEEecCC---------CEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeE
Q 001790 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ---------NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1012)
Q Consensus 566 i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (1012)
++||..........+..|.+ .|..+.|+|.+ ..+++++.|++|++||+..+.++..+..+ ..+|.+++
T Consensus 383 lkiWs~~~~~~~~~l~~Hsk-ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH--~~pVysva 459 (524)
T KOG0273|consen 383 LKIWSMGQSNSVHDLQAHSK-EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH--QEPVYSVA 459 (524)
T ss_pred eEeeecCCCcchhhhhhhcc-ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC--CCceEEEE
Confidence 99999999999999999987 78889999976 36899999999999999999999998654 44899999
Q ss_pred eecCCCEEEEEECCCcEEEEEccCC
Q 001790 637 FSKEGNLLAVTTADNGFKILANAIG 661 (1012)
Q Consensus 637 ~s~~g~~l~~~~~dg~i~iwd~~~~ 661 (1012)
|+|+|+++|+|+.||.|.+|+..++
T Consensus 460 fS~~g~ylAsGs~dg~V~iws~~~~ 484 (524)
T KOG0273|consen 460 FSPNGRYLASGSLDGCVHIWSTKTG 484 (524)
T ss_pred ecCCCcEEEecCCCCeeEeccccch
Confidence 9999999999999999999998776
No 15
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7.7e-42 Score=336.71 Aligned_cols=283 Identities=17% Similarity=0.256 Sum_probs=263.8
Q ss_pred ecCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC--C
Q 001790 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD--G 418 (1012)
Q Consensus 341 ~~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd--g 418 (1012)
++...+|..+.||+|++ .||||+-+|.++||+..+...+. +|.||.+.|.++.|+|. +
T Consensus 172 ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~-------------------~l~gH~~~v~~~~fhP~~~~ 231 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQ-------------------TLRGHTSRVGAAVFHPVDSD 231 (459)
T ss_pred ccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeE-------------------EEeccccceeeEEEccCCCc
Confidence 34567999999999999 79999999999999998886553 39999999999999996 6
Q ss_pred CEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCCccCE
Q 001790 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV 497 (1012)
Q Consensus 419 ~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~v 497 (1012)
..+|||+.||+|++|++.+...+. .+.+|...|..++|+|+|+ +|+|++.|.+-++|| .++..+....||...|
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v 306 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGV 306 (459)
T ss_pred cceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhccccccc
Confidence 799999999999999999876665 6889999999999999999 899999999999999 8888888899999999
Q ss_pred EEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeee
Q 001790 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1012)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~ 577 (1012)
.+++|++ ||.++++|+.|..-+|||++++.++..+.+|..+|.+++|+|+|..|++|+ +|++++|||++..+.+
T Consensus 307 ~~iaf~~--DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs----~Dnt~kVWDLR~r~~l 380 (459)
T KOG0272|consen 307 FSIAFQP--DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGS----SDNTCKVWDLRMRSEL 380 (459)
T ss_pred ceeEecC--CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecC----CCCcEEEeeecccccc
Confidence 9999977 678999999999999999999999999999999999999999999999999 5999999999999999
Q ss_pred eeecCCCCCcceEEEEec-CCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEE
Q 001790 578 RTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (1012)
Q Consensus 578 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw 656 (1012)
.++.+|.+ .|+.++|+| .|.+|++++.|+++++|...+..+++.+..|. ..|.++.+++++..+++++.|.++++|
T Consensus 381 y~ipAH~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe--~kV~s~Dis~d~~~i~t~s~DRT~KLW 457 (459)
T KOG0272|consen 381 YTIPAHSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHE--GKVISLDISPDSQAIATSSFDRTIKLW 457 (459)
T ss_pred eecccccc-hhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCc--cceEEEEeccCCceEEEeccCceeeec
Confidence 99999988 899999998 67899999999999999999999999998654 489999999999999999999999999
Q ss_pred E
Q 001790 657 A 657 (1012)
Q Consensus 657 d 657 (1012)
.
T Consensus 458 ~ 458 (459)
T KOG0272|consen 458 R 458 (459)
T ss_pred c
Confidence 5
No 16
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.5e-39 Score=330.15 Aligned_cols=473 Identities=16% Similarity=0.272 Sum_probs=358.8
Q ss_pred CCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001790 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1012)
Q Consensus 343 h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 422 (1012)
++..|.|+.|+|... ++.++-..|.|.|||.++...+.+ +.-..-+|.+..|-+-.++++
T Consensus 12 rSdRVKsVd~HPteP-w~la~LynG~V~IWnyetqtmVks-------------------feV~~~PvRa~kfiaRknWiv 71 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEP-WILAALYNGDVQIWNYETQTMVKS-------------------FEVSEVPVRAAKFIARKNWIV 71 (794)
T ss_pred cCCceeeeecCCCCc-eEEEeeecCeeEEEecccceeeee-------------------eeecccchhhheeeeccceEE
Confidence 788999999999999 466677899999999999888765 333567899999999999999
Q ss_pred EEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe--CCCcceeeecCCccCEEEE
Q 001790 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSI 500 (1012)
Q Consensus 423 s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd--~~~~~~~~~~~h~~~v~~~ 500 (1012)
+|+.|..|+||++.+++.+. .+..|...|++++.+|... +++|+|+|-+|++|| ..-.+.++|.||...|.++
T Consensus 72 ~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv 146 (794)
T KOG0276|consen 72 TGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV 146 (794)
T ss_pred EecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence 99999999999999998777 6889999999999999998 899999999999999 4456789999999999999
Q ss_pred eccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCC--CeEEEeeecCCCCCcEEEEeCCCCeeee
Q 001790 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG--SRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1012)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~~~~~~i~lwd~~~~~~~~ 578 (1012)
+|+|.. .+.+++++-|++|++|.+....+..++.+|...|+++.+-+-| .+|++|+ .|..+++||.++..+++
T Consensus 147 ~fnPkD-~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsga----DD~tiKvWDyQtk~CV~ 221 (794)
T KOG0276|consen 147 AFNPKD-PNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGA----DDLTIKVWDYQTKSCVQ 221 (794)
T ss_pred EecCCC-ccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecC----CCceEEEeecchHHHHH
Confidence 999974 4789999999999999999999999999999999999998755 5899988 59999999999999999
Q ss_pred eecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEc
Q 001790 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1012)
Q Consensus 579 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~ 658 (1012)
++.||.. .|..++|+|.-..+++|++||+++||+..+.++...+..... .++|++-.+.++.+++|.+.|.|.+ .+
T Consensus 222 TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gle--RvW~I~~~k~~~~i~vG~Deg~i~v-~l 297 (794)
T KOG0276|consen 222 TLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLE--RVWCIAAHKGDGKIAVGFDEGSVTV-KL 297 (794)
T ss_pred Hhhcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCc--eEEEEeecCCCCeEEEeccCCcEEE-Ec
Confidence 9999998 899999999999999999999999999999988888876544 8999999999999999999888755 22
Q ss_pred cCCceeeecccCCccccccCccceeeeccccccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCC
Q 001790 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKP 738 (1012)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 738 (1012)
..+ ...+.+.+.|+.+
T Consensus 298 gre------------------eP~vsMd~~gKIi---------------------------------------------- 313 (794)
T KOG0276|consen 298 GRE------------------EPAVSMDSNGKII---------------------------------------------- 313 (794)
T ss_pred cCC------------------CCceeecCCccEE----------------------------------------------
Confidence 111 1123333333332
Q ss_pred CCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeeccCeeEeeeccccccCCCCCccccccceeeccCCC
Q 001790 739 KPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSG 818 (1012)
Q Consensus 739 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~ 818 (1012)
|... +.|..+-. -+.+.++ ++..|
T Consensus 314 --wa~~--------------------~ei~~~~~-------ks~~~~~---------------------------ev~Dg 337 (794)
T KOG0276|consen 314 --WAVH--------------------SEIQAVNL-------KSVGAQK---------------------------EVTDG 337 (794)
T ss_pred --EEcC--------------------ceeeeeec-------eeccCcc---------------------------cccCC
Confidence 1110 01111100 0001100 11111
Q ss_pred ceeeecccCCC-CCCCEeEEEEeeCCCEEEEEcCCcEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeE
Q 001790 819 LLMANDVAGVN-LEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTI 897 (1012)
Q Consensus 819 ~~~~~~~~~~~-~~~~v~~~~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v 897 (1012)
+.+....+..+ -.-....++.||+|+++++++||...||..-..+. ...+.-....|++ |....|+-..++.|
T Consensus 338 ErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~Rn-----K~fG~~~eFvw~~-dsne~avRes~~~v 411 (794)
T KOG0276|consen 338 ERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALALRN-----KAFGSGLEFVWAA-DSNEFAVRESNGNV 411 (794)
T ss_pred ccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeeehhh-----cccccceeEEEcC-CCCeEEEEecCCce
Confidence 11110000000 11112357889999999999999999987422211 1334556788998 76777778788999
Q ss_pred EEEEccCCeEeEEecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCccccEEEecCCCCCCCCceEEEEcCCCCE
Q 001790 898 HIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVR 977 (1012)
Q Consensus 898 ~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~ 977 (1012)
+++ ++++..+++...-. ...--.|.+|...+ ++.+++||.++++.++.+.+. ...+.|+.+|.+
T Consensus 412 ki~--knfke~ksi~~~~~----~e~i~gg~Llg~~s-s~~~~fydW~~~~lVrrI~v~---------~k~v~w~d~g~l 475 (794)
T KOG0276|consen 412 KIF--KNFKEHKSIRPDMS----AEGIFGGPLLGVRS-SDFLCFYDWESGELVRRIEVT---------SKHVYWSDNGEL 475 (794)
T ss_pred EEE--ecceeccccccccc----eeeecCCceEEEEe-CCeEEEEEcccceEEEEEeec---------cceeEEecCCCE
Confidence 998 67776666542211 11222355666555 556999999999977655433 256999999999
Q ss_pred EEEEeCCeEEEEEC
Q 001790 978 MLVVHETQLAIYDA 991 (1012)
Q Consensus 978 l~~~~d~~i~vwd~ 991 (1012)
++.+.|.+.+++..
T Consensus 476 Vai~~d~Sfyil~~ 489 (794)
T KOG0276|consen 476 VAIAGDDSFYILKF 489 (794)
T ss_pred EEEEecCceeEEEe
Confidence 99998777666554
No 17
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=2.7e-38 Score=337.05 Aligned_cols=565 Identities=12% Similarity=0.165 Sum_probs=410.1
Q ss_pred CCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001790 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1012)
Q Consensus 343 h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 422 (1012)
+...|+|++=+.+- +.+|+ ...|.+|. .|+.+. .++.+|.+.|.-+. |=|.+++
T Consensus 75 lp~~I~alas~~~~---vy~A~-g~~i~~~~--rgk~i~------------------~~~~~~~a~v~~l~--~fGe~li 128 (910)
T KOG1539|consen 75 LPDKITALASDKDY---VYVAS-GNKIYAYA--RGKHIR------------------HTTLLHGAKVHLLL--PFGEHLI 128 (910)
T ss_pred CCCceEEEEecCce---EEEec-CcEEEEEE--ccceEE------------------EEeccccceEEEEe--eecceEE
Confidence 77899999876653 34433 34666665 354432 33666877787765 3488999
Q ss_pred EEECCCeEEEEeecCC-Ccceeeeee-eccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCCccCEEE
Q 001790 423 VAFTKHLIQLYSYAGS-NDLRQHSQI-DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1012)
Q Consensus 423 s~~~d~~v~vwd~~~~-~~~~~~~~l-~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~v~~ 499 (1012)
++..++.+.||+..++ +......++ +...+.|+++. +|.----.++.|+.+|.+.+|+ .+++.+.+++++...|++
T Consensus 129 a~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ 207 (910)
T KOG1539|consen 129 AVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITA 207 (910)
T ss_pred EEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeE
Confidence 9999999999999885 221211122 22223377764 4442212588899999999999 999999999999999999
Q ss_pred EeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeee
Q 001790 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1012)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~ 579 (1012)
+.-+|. -+.++.|..+|+|.+++++..+...++....++|++++|..||..+++.+. ..|.+.+||++..+.+..
T Consensus 208 ieqsPa--LDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~---~~G~m~~wDLe~kkl~~v 282 (910)
T KOG1539|consen 208 IEQSPA--LDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR---SNGDMAFWDLEKKKLINV 282 (910)
T ss_pred eccCCc--ceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc---CCceEEEEEcCCCeeeee
Confidence 986664 468999999999999999999999999988899999999999998777664 478899999999998888
Q ss_pred ecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCC--CCeeEEEEecCCCCCCcceeEee-cCCCEEEEEECCCcEEEE
Q 001790 580 YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD--NVNILTSTDAEGGLPNLPRLRFS-KEGNLLAVTTADNGFKIL 656 (1012)
Q Consensus 580 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~v~~s-~~g~~l~~~~~dg~i~iw 656 (1012)
....+.+.+....|.|....+++++.|+.+++|=.. .|.+.......+|..+..++.|. .+|..+.+++.|++++.+
T Consensus 283 ~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~f 362 (910)
T KOG1539|consen 283 TRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSF 362 (910)
T ss_pred eeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhh
Confidence 875555588889999999999999999998888544 44333223334677788999998 689999999999999998
Q ss_pred EccCCceeeecccCCccccccCccceeeeccccccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccC
Q 001790 657 ANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTD 736 (1012)
Q Consensus 657 d~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 736 (1012)
++.........-+.+..... .++. .........+....++............++..-.+.
T Consensus 363 s~~~e~~~~~l~~~~~~~~~-kk~~-------------------~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~ 422 (910)
T KOG1539|consen 363 SVISESQSQELGQLHNKKRA-KKVN-------------------VFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKR 422 (910)
T ss_pred hhhHHHHhHhhccccccccc-cccc-------------------ccchhhhcCCcceeeecccchhhhhcceeEEecCcc
Confidence 87543111111110000000 0000 000000111111111111112222334444455556
Q ss_pred CCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeeccCeeEeeeccccccCCCCCccccccceeeccC
Q 001790 737 KPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPS 816 (1012)
Q Consensus 737 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~ 816 (1012)
..+.|+............. -+ .......+++++.++-|++.+.|.+.|.|.+|+++.+
T Consensus 423 ~~~tW~~~n~~~G~~~L~~-~~-~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG-------------------- 480 (910)
T KOG1539|consen 423 SAYTWNFRNKTSGRHVLDP-KR-FKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSG-------------------- 480 (910)
T ss_pred eEEEEeccCcccccEEecC-cc-ccccCcceEEEEEeccCceEEEeccCCeEEEEEcccC--------------------
Confidence 7788888754332211110 00 0113467899999999999999999999999976543
Q ss_pred CCceeeecccCCCCCCCEeEEEEeeCCCEEEEEc-CCcEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEEeCCC
Q 001790 817 SGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895 (1012)
Q Consensus 817 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg 895 (1012)
...........|..+|+.++...-++.+++++ +|-+++||..+..++..+.- ...++++.++. ...++|.+.+|-
T Consensus 481 --i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-~~~~~~iv~hr-~s~l~a~~~ddf 556 (910)
T KOG1539|consen 481 --IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL-GSSITGIVYHR-VSDLLAIALDDF 556 (910)
T ss_pred --eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc-CCCcceeeeee-hhhhhhhhcCce
Confidence 22222212224999999999988888898887 99999999998887777763 34578888888 788999999999
Q ss_pred eEEEEEccCCeEeEEecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCccccEEEecCCCCCCCCceEEEEcCCC
Q 001790 896 TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQ 975 (1012)
Q Consensus 896 ~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~ 975 (1012)
.|+++|+.+.+.++.|.||.+.|++++|||||++|++++.|++|++||+.++.++-.+.+. .+.+++.|||+|
T Consensus 557 ~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd-------~~~~sls~SPng 629 (910)
T KOG1539|consen 557 SIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD-------SPCTSLSFSPNG 629 (910)
T ss_pred eEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC-------CcceeeEECCCC
Confidence 9999999999999999999999999999999999999999999999999999977665544 677999999999
Q ss_pred CEEEEEe-C-CeEEEEECC
Q 001790 976 VRMLVVH-E-TQLAIYDAS 992 (1012)
Q Consensus 976 ~~l~~~~-d-~~i~vwd~~ 992 (1012)
.+||+++ | ..|++|.=.
T Consensus 630 D~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 630 DFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred CEEEEEEecCceEEEEEch
Confidence 9999984 4 579999643
No 18
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=3.9e-39 Score=335.88 Aligned_cols=500 Identities=16% Similarity=0.222 Sum_probs=359.7
Q ss_pred CCCceEEEEEecCCCcEEEEec--CCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCE
Q 001790 343 QGSTVISMDFHPSHQTLLLVGS--SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1012)
Q Consensus 343 h~~~V~~~~~spdg~~llasg~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 420 (1012)
|..+++|++||++|+ |+|+|- ..-.++||++.....+.+ +..|.-.|+|++|+|.++|
T Consensus 77 sRk~~t~vAfS~~Gr-yvatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaFsp~~ky 136 (1080)
T KOG1408|consen 77 SRKPLTCVAFSQNGR-YVATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAFSPGNKY 136 (1080)
T ss_pred cCcceeEEEEcCCCc-EEEecccCCCccceeeeeccccchhh-------------------hhhccccceeeeecCCCcE
Confidence 666999999999999 799985 456899999988766554 6779999999999999999
Q ss_pred EEEEEC--CCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCccee---------
Q 001790 421 VGVAFT--KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF--------- 488 (1012)
Q Consensus 421 las~~~--d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~--------- 488 (1012)
+++.+. |-.|.+||+....... -..-...|.+++|+.||. +++|.+ ...|++|. ..++...
T Consensus 137 vvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs 209 (1080)
T KOG1408|consen 137 VVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRS 209 (1080)
T ss_pred EEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCccccchh
Confidence 998765 4468889887543222 223456799999999999 889888 67899998 3332110
Q ss_pred ----ee------------------------cCC-----------------ccCEEEEeccccCCceEEEEEecCCeEEEE
Q 001790 489 ----NF------------------------EGH-----------------EAPVYSICPHHKENIQFIFSTAIDGKIKAW 523 (1012)
Q Consensus 489 ----~~------------------------~~h-----------------~~~v~~~~~~~~~~~~~l~s~~~dg~i~~w 523 (1012)
.+ .|| +..-.|+++ +.++|+.|+.+|.|++|
T Consensus 210 ~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV----s~r~I~cgCa~g~vrlF 285 (1080)
T KOG1408|consen 210 YFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV----SSRLIACGCAKGMVRLF 285 (1080)
T ss_pred hhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee----ecceEEEeeccceeeec
Confidence 00 011 112233443 23689999999999999
Q ss_pred EcCCCCceeeecC------------------------CCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeee-
Q 001790 524 LYDTMGSRVDYDA------------------------PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR- 578 (1012)
Q Consensus 524 d~~~~~~~~~~~~------------------------~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~- 578 (1012)
+..+..-..++.. .-....++.|++....|.+.. +|..+++||++.-..+.
T Consensus 286 np~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVY----ndhSlYvWDvrD~~kvgk 361 (1080)
T KOG1408|consen 286 NPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVY----NDHSLYVWDVRDVNKVGK 361 (1080)
T ss_pred CcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEE----cCceEEEEeccccccccc
Confidence 8765322211110 001245678898888888877 69999999998754332
Q ss_pred --eecCCCCCcceEEEEecC-----------CCEEEEEeCCCcEEEEeCCCCeeEEEE-------------e--------
Q 001790 579 --TYAGFRKKSNGVVQFDTT-----------QNHFLAVGEDSQIKFWDMDNVNILTST-------------D-------- 624 (1012)
Q Consensus 579 --~~~~~~~~~v~~~~~s~~-----------~~~l~~~~~dg~i~iwd~~~~~~~~~~-------------~-------- 624 (1012)
.+-.|.. .|+.+..-|. ..-+++++.|++|++|++..+..-..+ .
T Consensus 362 ~~s~lyHS~-ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~ 440 (1080)
T KOG1408|consen 362 CSSMLYHSA-CIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIM 440 (1080)
T ss_pred eeeeeeccc-eeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhh
Confidence 2222322 3333332220 134889999999999999762210000 0
Q ss_pred --------------cCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeeccccc
Q 001790 625 --------------AEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSAS 690 (1012)
Q Consensus 625 --------------~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~ 690 (1012)
.-+....+.+++.+|+|++||+|...|++++|++.+. +....+ +.|.+.|.++.++...
T Consensus 441 ~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l-~~~~~~-----eAHesEilcLeyS~p~- 513 (1080)
T KOG1408|consen 441 HDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL-EYTCFM-----EAHESEILCLEYSFPV- 513 (1080)
T ss_pred hhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhh-hhhhhe-----ecccceeEEEeecCch-
Confidence 0011224789999999999999999999999999765 222223 3345557777766321
Q ss_pred cccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEE
Q 001790 691 SAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRL 770 (1012)
Q Consensus 691 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 770 (1012)
-..+.+++++.|.-|+++|....... ..++ .+|...|+++
T Consensus 514 ---------------------------------~~~kLLASasrdRlIHV~Dv~rny~l----~qtl---d~HSssITsv 553 (1080)
T KOG1408|consen 514 ---------------------------------LTNKLLASASRDRLIHVYDVKRNYDL----VQTL---DGHSSSITSV 553 (1080)
T ss_pred ---------------------------------hhhHhhhhccCCceEEEEecccccch----hhhh---cccccceeEE
Confidence 12367789999999999998632211 1133 3499999999
Q ss_pred EEecCc--ceEEEeeccCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEE
Q 001790 771 LYTNSA--VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMS 848 (1012)
Q Consensus 771 ~~s~~g--~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 848 (1012)
.|...| ..++++|.|..|.+-...+. .+|....... ..-....+..+++.|..+++++
T Consensus 554 KFa~~gln~~MiscGADksimFr~~qk~-------------------~~g~~f~r~t-~t~~ktTlYDm~Vdp~~k~v~t 613 (1080)
T KOG1408|consen 554 KFACNGLNRKMISCGADKSIMFRVNQKA-------------------SSGRLFPRHT-QTLSKTTLYDMAVDPTSKLVVT 613 (1080)
T ss_pred EEeecCCceEEEeccCchhhheehhccc-------------------cCceeccccc-cccccceEEEeeeCCCcceEEE
Confidence 999888 78999999977765322110 0111110000 0013556889999999999999
Q ss_pred Ec-CCcEEEEEcCCCeEEEEEcC---CCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeEEecccCCCeEEEEEc
Q 001790 849 AT-GGKISLFNMMTFKVMTTFMS---PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFS 924 (1012)
Q Consensus 849 ~s-dg~i~lwd~~~~~~~~~~~~---~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s 924 (1012)
++ |..|+|||+.+++..+.|++ |.+....+...| .|.|||+.+.|+++.++|..+|+++.+..||...|+.+.|+
T Consensus 614 ~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~ 692 (1080)
T KOG1408|consen 614 VCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFL 692 (1080)
T ss_pred EecccceEEEeccccceeeeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeec
Confidence 99 99999999999999999985 566788899999 99999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCC
Q 001790 925 TSLNILVSSGADAQLCVWSIDT 946 (1012)
Q Consensus 925 pdg~~l~s~s~Dg~i~vwd~~~ 946 (1012)
+|.+.|++++.||+|.||.+..
T Consensus 693 nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 693 NDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ccchhheeecCCceEEEEECch
Confidence 9999999999999999999865
No 19
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-39 Score=303.85 Aligned_cols=295 Identities=22% Similarity=0.310 Sum_probs=256.6
Q ss_pred Eeec-CCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC
Q 001790 339 VSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1012)
Q Consensus 339 ~~~~-h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 417 (1012)
-++. |++.|+.++..+.+..++.+++.|.++.+|++.......- ...+.+.||+..|..++.++|
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G--------------~~~r~~~GHsH~v~dv~~s~d 74 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYG--------------VPVRRLTGHSHFVSDVVLSSD 74 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccC--------------ceeeeeeccceEecceEEccC
Confidence 3444 9999999999999888999999999999999876532211 123458999999999999999
Q ss_pred CCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEeCCCcceeeecCC--cc
Q 001790 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH--EA 495 (1012)
Q Consensus 418 g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~h--~~ 495 (1012)
|++.++++.|+++++||+.+|+..+ .|.+|...|.+++|++|++ .+++|+.|++|++|+.-|.+..++..+ .+
T Consensus 75 g~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~g~ck~t~~~~~~~~ 149 (315)
T KOG0279|consen 75 GNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTLGVCKYTIHEDSHRE 149 (315)
T ss_pred CceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeecccEEEEEecCCCcC
Confidence 9999999999999999999997665 6889999999999999999 899999999999999777777777654 78
Q ss_pred CEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCe
Q 001790 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1012)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~ 575 (1012)
.|.|+.|+|+.+..+|++++.|++|++||+++.+....+.+|.+.++.+++||||..+++|+ +++.+.+||++.++
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg----kdg~~~LwdL~~~k 225 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG----KDGEAMLWDLNEGK 225 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCC----CCceEEEEEccCCc
Confidence 99999999998778999999999999999999999999999999999999999999999988 69999999999999
Q ss_pred eeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCC-------CCCcceeEeecCCCEEEEEE
Q 001790 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG-------LPNLPRLRFSKEGNLLAVTT 648 (1012)
Q Consensus 576 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~v~~s~~g~~l~~~~ 648 (1012)
.+..+.... .|.+++|+|+.-+|+.+. +..|+|||+.++..+..+..... .....+++|++||..|+.|.
T Consensus 226 ~lysl~a~~--~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~ 302 (315)
T KOG0279|consen 226 NLYSLEAFD--IVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGY 302 (315)
T ss_pred eeEeccCCC--eEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeee
Confidence 988887543 799999999876666655 44699999999988877754322 22356789999999999999
Q ss_pred CCCcEEEEEcc
Q 001790 649 ADNGFKILANA 659 (1012)
Q Consensus 649 ~dg~i~iwd~~ 659 (1012)
.|+.|++|.+.
T Consensus 303 td~~irv~qv~ 313 (315)
T KOG0279|consen 303 TDNVIRVWQVA 313 (315)
T ss_pred cCCcEEEEEee
Confidence 99999999864
No 20
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.5e-39 Score=305.29 Aligned_cols=293 Identities=16% Similarity=0.248 Sum_probs=263.1
Q ss_pred ccceEeec-CCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEE
Q 001790 335 RTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1012)
Q Consensus 335 ~~~~~~~~-h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 413 (1012)
....+++. |...|.++.|++|.+ .+++++.||.+.|||.-+..+++. +.-....|..++
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA 104 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCA 104 (343)
T ss_pred eeeEEEecccccceeeeEecCCcC-eEEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEE
Confidence 44446666 999999999999999 599999999999999988776643 333577999999
Q ss_pred EccCCCEEEEEECCCeEEEEeecCCC---cceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceee
Q 001790 414 WSPDGNYVGVAFTKHLIQLYSYAGSN---DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (1012)
Q Consensus 414 ~spdg~~las~~~d~~v~vwd~~~~~---~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~ 489 (1012)
|+|.|+++|.|+.|+...||++.+.+ .++....+.+|++.+.|+.|.+|++ |+|++.|.+..+|| .+|+.+..
T Consensus 105 ~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~ 181 (343)
T KOG0286|consen 105 YSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQV 181 (343)
T ss_pred ECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEE
Confidence 99999999999999999999998652 2344457889999999999999876 89999999999999 99999999
Q ss_pred ecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEE
Q 001790 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (1012)
Q Consensus 490 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lw 569 (1012)
|.||.+.|.++++.|+ +++.+++|+-|+..++||++.+.....+.+|...|+++.|.|+|.-+++|+ .|++.++|
T Consensus 182 f~GH~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGS----DD~tcRly 256 (343)
T KOG0286|consen 182 FHGHTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGS----DDATCRLY 256 (343)
T ss_pred ecCCcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecC----CCceeEEE
Confidence 9999999999999886 678999999999999999999999999999999999999999999999998 59999999
Q ss_pred eCCCCeeeeeecCCC-CCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEE
Q 001790 570 NESEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1012)
Q Consensus 570 d~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~ 648 (1012)
|++..+.+..|.... ...|++++|+..|++|++|..|..+.+||.-.++.+..+..|. ..|+++..+|||..+++|+
T Consensus 257 DlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHe--NRvScl~~s~DG~av~TgS 334 (343)
T KOG0286|consen 257 DLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHE--NRVSCLGVSPDGMAVATGS 334 (343)
T ss_pred eecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccC--CeeEEEEECCCCcEEEecc
Confidence 999999888887432 2368999999999999999999999999999999998888554 4999999999999999999
Q ss_pred CCCcEEEEE
Q 001790 649 ADNGFKILA 657 (1012)
Q Consensus 649 ~dg~i~iwd 657 (1012)
.|.+++||.
T Consensus 335 WDs~lriW~ 343 (343)
T KOG0286|consen 335 WDSTLRIWA 343 (343)
T ss_pred hhHheeecC
Confidence 999999994
No 21
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.4e-40 Score=326.14 Aligned_cols=284 Identities=21% Similarity=0.309 Sum_probs=255.4
Q ss_pred CCCcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-C
Q 001790 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (1012)
Q Consensus 404 ~h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~ 482 (1012)
|-+.+|..+.||+|++.||||+-+|.++||+..+...+. +|.+|...|.++.|+|......+|||+.||++++|+ .
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 356789999999999999999999999999999875444 799999999999999984223799999999999999 6
Q ss_pred CCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCC
Q 001790 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (1012)
Q Consensus 483 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 562 (1012)
+..++..+.+|...|..++|+| +|++|+|++.|.+-++||+++........+|...|.+++|.+||..+++|+.
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHP--sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl---- 323 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHP--SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL---- 323 (459)
T ss_pred CCcchhhhhcchhhheeeeecC--CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence 6689999999999999999988 5689999999999999999999999999999999999999999999999994
Q ss_pred CCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeec-CC
Q 001790 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EG 641 (1012)
Q Consensus 563 ~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~g 641 (1012)
|..-++||+++|+++..+.+|.+ .|..++|+|+|-.+++|+.|++++|||++....+..+..| ..-|+.|.|+| .|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH--~nlVS~Vk~~p~~g 400 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAH--SNLVSQVKYSPQEG 400 (459)
T ss_pred cchhheeecccCcEEEEeccccc-ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccc--cchhhheEecccCC
Confidence 88889999999999999999887 8999999999999999999999999999998888877755 44899999999 89
Q ss_pred CEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeeccccccccccCCCCCccccccCCCCCCccccCCCCC
Q 001790 642 NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPT 721 (1012)
Q Consensus 642 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1012)
.+|++++.|+++++|...+. .+.+.+
T Consensus 401 ~fL~TasyD~t~kiWs~~~~-~~~ksL----------------------------------------------------- 426 (459)
T KOG0272|consen 401 YFLVTASYDNTVKIWSTRTW-SPLKSL----------------------------------------------------- 426 (459)
T ss_pred eEEEEcccCcceeeecCCCc-ccchhh-----------------------------------------------------
Confidence 99999999999999987664 222211
Q ss_pred CCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeeccCeeEeee
Q 001790 722 SRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 792 (1012)
Q Consensus 722 ~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~ 792 (1012)
.+|.+.|.++.+++|+..+++++.|.++++|.
T Consensus 427 ---------------------------------------aGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 427 ---------------------------------------AGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ---------------------------------------cCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 23889999999999999999999999999994
No 22
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=2.2e-37 Score=323.45 Aligned_cols=568 Identities=14% Similarity=0.168 Sum_probs=363.7
Q ss_pred cceEeec-CCCceEEEEEecCCC--cEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEE
Q 001790 336 TVAVSLH-QGSTVISMDFHPSHQ--TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1012)
Q Consensus 336 ~~~~~~~-h~~~V~~~~~spdg~--~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 412 (1012)
....++. |..+|+|+.|-|+.+ -++++|+.||.|++|.++....... ..+.+|...+.|+
T Consensus 45 ~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i-----------------~~~~g~~~~~~cv 107 (764)
T KOG1063|consen 45 LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKI-----------------YTIQGHCKECVCV 107 (764)
T ss_pred eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEE-----------------EeecCcceeEEEE
Confidence 3444444 999999999998875 1488999999999999984433321 2255666665555
Q ss_pred EEccCCCEEEEEECCCeEEEEeecCCCcceeeeeee--ccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCC--cce
Q 001790 413 AWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQID--AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG--RKL 487 (1012)
Q Consensus 413 ~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~--~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~--~~~ 487 (1012)
. ..-........|+++.+||.+..+ +.....+. ....--.|+++.++.+.++++.|+.+..|.++. ..+ +.+
T Consensus 108 ~--a~~~~~~~~~ad~~v~vw~~~~~e-~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v 184 (764)
T KOG1063|consen 108 V--ARSSVMTCKAADGTVSVWDKQQDE-VFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARV 184 (764)
T ss_pred E--eeeeEEEeeccCceEEEeecCCCc-eeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEE
Confidence 4 322233333789999999996544 11111122 122234567777766655778888888888887 433 456
Q ss_pred eeecCCccCEEEEeccccCC-ceEEEEEecCCeEEEEEcCCCC------------------------ce-------eeec
Q 001790 488 FNFEGHEAPVYSICPHHKEN-IQFIFSTAIDGKIKAWLYDTMG------------------------SR-------VDYD 535 (1012)
Q Consensus 488 ~~~~~h~~~v~~~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~------------------------~~-------~~~~ 535 (1012)
..+.||.+.|.+++|..... .-+|++++.|..||+|.+.... .. ..+.
T Consensus 185 ~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~ 264 (764)
T KOG1063|consen 185 AELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLM 264 (764)
T ss_pred EEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhc
Confidence 78899999999999976544 5688999999999999774332 00 0134
Q ss_pred CCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCC--eeeeeec----CCCCCcceEEEEecCCCEEEEEeCCCcE
Q 001790 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG--TIKRTYA----GFRKKSNGVVQFDTTQNHFLAVGEDSQI 609 (1012)
Q Consensus 536 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~--~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~dg~i 609 (1012)
+|.+.|.++.|+|.+..|++++. |.++.+|...+. --+.... ++........-|+|+++.+++-+..|..
T Consensus 265 GHeDWV~sv~W~p~~~~LLSASa----DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 265 GHEDWVYSVWWHPEGLDLLSASA----DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF 340 (764)
T ss_pred CcccceEEEEEccchhhheeccc----CcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence 78899999999999988888885 899999976654 2222211 1222246778899999999999999999
Q ss_pred EEEeCCC-CeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeeccc
Q 001790 610 KFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVS 688 (1012)
Q Consensus 610 ~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~ 688 (1012)
++|.... ..........+|...|.+++|+|.|.++.+.+.|.+-|+|-.-..+.....+.. ...|.-.+.+++|-+
T Consensus 341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaR--PQiHGyDl~c~~~vn- 417 (764)
T KOG1063|consen 341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIAR--PQIHGYDLTCLSFVN- 417 (764)
T ss_pred EEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecc--cccccccceeeehcc-
Confidence 9998333 333444455677889999999999999999999999999865422111111110 011111122232222
Q ss_pred cccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceE
Q 001790 689 ASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVV 768 (1012)
Q Consensus 689 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~ 768 (1012)
....+++|.....+|+++.... -...+ ..+.
T Consensus 418 ------------------------------------~~~~FVSgAdEKVlRvF~aPk~----fv~~l---------~~i~ 448 (764)
T KOG1063|consen 418 ------------------------------------EDLQFVSGADEKVLRVFEAPKS----FVKSL---------MAIC 448 (764)
T ss_pred ------------------------------------CCceeeecccceeeeeecCcHH----HHHHH---------HHHh
Confidence 1122334444344445443210 00000 0000
Q ss_pred EEE-----EecCcceEEEeec-cCeeEeeeccccccCCCCCcc--------ccccceeeccCC-Cc-------eeeeccc
Q 001790 769 RLL-----YTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKAT--------ASAVPQHWLPSS-GL-------LMANDVA 826 (1012)
Q Consensus 769 ~l~-----~s~~g~~l~~~~~-dg~i~~w~~~~~~~~~~g~~~--------~~~~~~~~~~~~-~~-------~~~~~~~ 826 (1012)
+.+ -.|+|..+-+-+- +..+..=+ ...|... +.....+..+.. .+ +-...+.
T Consensus 449 g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e------~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLY 522 (764)
T KOG1063|consen 449 GKCFKGSDELPDGANVPALGLSNKAFFPGE------TNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLY 522 (764)
T ss_pred CccccCchhcccccccccccccCCCCcccc------cccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhc
Confidence 000 0111111100000 00000000 0000000 000000000000 00 0111233
Q ss_pred CCCCCCCEeEEEEeeCCCEEEEEc-C-----CcEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEE
Q 001790 827 GVNLEEAVPCIALSKNDSYVMSAT-G-----GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIY 900 (1012)
Q Consensus 827 ~~~~~~~v~~~~~s~dg~~la~~s-d-----g~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iw 900 (1012)
| |...|.+++.||+|+++|+++ . ..|++|+..+-..+..+.+|.-.|+.|+||| |+++|++++.|+++.+|
T Consensus 523 G--HGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~ 599 (764)
T KOG1063|consen 523 G--HGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLY 599 (764)
T ss_pred c--CceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEee
Confidence 4 999999999999999999996 2 2499999999988889999999999999999 99999999999999999
Q ss_pred EccCCe----EeEEecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--CccccEEEecCCCCCCCCceEEEEcCC
Q 001790 901 NVRVDE----VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTW--EKRKSVTIHIPAGKTPTGDTRVQFNAD 974 (1012)
Q Consensus 901 d~~~~~----~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~v~~l~fs~d 974 (1012)
...... .....+.|+.-|.+..|+|++.++||+|.|++|+||..... +.+..+ .. ..+ ...|++++|.|-
T Consensus 600 ~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~--a~-~~~-~~aVTAv~~~~~ 675 (764)
T KOG1063|consen 600 EVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRF--AC-LKF-SLAVTAVAYLPV 675 (764)
T ss_pred eeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhh--ch-hcc-CCceeeEEeecc
Confidence 986542 12346789999999999999999999999999999999887 433221 11 111 278899998872
Q ss_pred ----C-CEEEEE-eCCeEEEEECC
Q 001790 975 ----Q-VRMLVV-HETQLAIYDAS 992 (1012)
Q Consensus 975 ----~-~~l~~~-~d~~i~vwd~~ 992 (1012)
. ..+++| ..|.|.+|...
T Consensus 676 ~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 676 DHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred ccccccceEEEEecccEEEEEecc
Confidence 2 256667 68999999965
No 23
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=4.4e-37 Score=320.62 Aligned_cols=564 Identities=14% Similarity=0.162 Sum_probs=371.0
Q ss_pred EEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEE--
Q 001790 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF-- 425 (1012)
Q Consensus 348 ~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~-- 425 (1012)
..++.+|... ++|-- ....|.+||.+..+.. .++..|..+++|++||++|+|+|+|-
T Consensus 41 ~gLa~~p~Sg-l~aYp-AGCvVVlfn~~~~tQ~-------------------hlvnssRk~~t~vAfS~~GryvatGEcG 99 (1080)
T KOG1408|consen 41 NGLASVPCSG-LCAYP-AGCVVVLFNVDSCTQS-------------------HLVNSSRKPLTCVAFSQNGRYVATGECG 99 (1080)
T ss_pred Cccccccccc-ceeec-cCcEEEEEcccccchh-------------------heecccCcceeEEEEcCCCcEEEecccC
Confidence 3455566554 34432 2458889998765543 34667888999999999999999985
Q ss_pred CCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcC--CCcEEEEe-CCCcceeeecCCccCEEEEec
Q 001790 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD--DKLIKVWE-LSGRKLFNFEGHEAPVYSICP 502 (1012)
Q Consensus 426 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~--d~~v~vwd-~~~~~~~~~~~h~~~v~~~~~ 502 (1012)
....++||++.....+. ++..|+-.|+|++|+|.++ ++++.+. |-.|.+|| ...-. ..-..-...|..++|
T Consensus 100 ~~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~-~asnkiss~Vsav~f 173 (1080)
T KOG1408|consen 100 RTPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSS-GASNKISSVVSAVAF 173 (1080)
T ss_pred CCccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhccc-ccccccceeEEEEEE
Confidence 55679999999876555 6788999999999999999 7776664 45677888 32222 222234566888888
Q ss_pred cccCCceEEEEEecCCeEEEEEcCCCCceee---ecC-------------------CC---C---cE-------------
Q 001790 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVD---YDA-------------------PG---H---WC------------- 541 (1012)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~---~~~-------------------~~---~---~v------------- 541 (1012)
+ ++|.++++.+ +..|++|.++....... +.+ .+ . .|
T Consensus 174 s--EdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRR 250 (1080)
T KOG1408|consen 174 S--EDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRR 250 (1080)
T ss_pred c--cCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhh
Confidence 4 4778888876 68899998876441110 000 00 0 01
Q ss_pred -------------EEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCC-----------------------C
Q 001790 542 -------------TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR-----------------------K 585 (1012)
Q Consensus 542 -------------~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~-----------------------~ 585 (1012)
.|+++ ..++|++++. +|.|++|+..+-....++...+ -
T Consensus 251 LLDKWVqcRTTnAnCIcV--s~r~I~cgCa----~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~f 324 (1080)
T KOG1408|consen 251 LLDKWVQCRTTNANCICV--SSRLIACGCA----KGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIF 324 (1080)
T ss_pred hhhhhhhhhccccceeee--ecceEEEeec----cceeeecCcchhhhccccccccccccchhhcccccccccccCcccC
Confidence 12222 4568888884 9999999987755544433111 0
Q ss_pred CcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEE-ecCCCCCCcceeEeecC-----------CCEEEEEECCCcE
Q 001790 586 KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST-DAEGGLPNLPRLRFSKE-----------GNLLAVTTADNGF 653 (1012)
Q Consensus 586 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~v~~s~~-----------g~~l~~~~~dg~i 653 (1012)
...-.+.|++....+.+...|..++|||++.-+.+... ..-.|..-|+.+.--|. ...+++++.|++|
T Consensus 325 PD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TI 404 (1080)
T KOG1408|consen 325 PDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTI 404 (1080)
T ss_pred CceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcE
Confidence 01234678888899999999999999999875433211 11122223444433331 1358899999999
Q ss_pred EEEEccCCceeeecccCCccccccCccceeeeccccccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCccccc
Q 001790 654 KILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDD 733 (1012)
Q Consensus 654 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 733 (1012)
|+|++..... -..+...... .....+.+.-+...++--.+ ...+++.........+.--.+..+|+|+.+++|+
T Consensus 405 RlW~l~~ctn-n~vyrRNils---~~l~ki~y~d~~~q~~~d~~--~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGD 478 (1080)
T KOG1408|consen 405 RLWDLAFCTN-NQVYRRNILS---ANLSKIPYEDSTQQIMHDAS--AGIFDKALVSTCDSRFGFRALAVSPDGQHLASGD 478 (1080)
T ss_pred EEeecccccc-cceeecccch---hhhhcCccccCchhhhhhcc--CCcccccchhhcCcccceEEEEECCCcceecccC
Confidence 9999976311 0010000000 00001111100000000000 0000000000000000011234678999999999
Q ss_pred ccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecC---cceEEEeeccCeeEeeeccccccCCCCCccccccc
Q 001790 734 VTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNS---AVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVP 810 (1012)
Q Consensus 734 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~---g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~ 810 (1012)
.-|++++|++....... .+ ..|..+|.++.|+.. .+.|++++.|..|.+||+...
T Consensus 479 r~GnlrVy~Lq~l~~~~-----~~---eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn-------------- 536 (1080)
T KOG1408|consen 479 RGGNLRVYDLQELEYTC-----FM---EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN-------------- 536 (1080)
T ss_pred ccCceEEEEehhhhhhh-----he---ecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc--------------
Confidence 99999999987532211 12 349999999999863 568899999999999976432
Q ss_pred eeeccCCCceeeecccCCCCCCCEeEEEEeeCC--CEEEEEc-CCcEEEEEcCC-CeEEEEEcC-----CCCCeeEEEEe
Q 001790 811 QHWLPSSGLLMANDVAGVNLEEAVPCIALSKND--SYVMSAT-GGKISLFNMMT-FKVMTTFMS-----PPPASTFLAFH 881 (1012)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg--~~la~~s-dg~i~lwd~~~-~~~~~~~~~-----~~~~i~~l~~s 881 (1012)
..+...+.+ |...|+++.|..+| ..+++++ |..|.+ +... ..-...+.. ....+..|++.
T Consensus 537 --------y~l~qtld~--HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g~~f~r~t~t~~ktTlYDm~Vd 605 (1080)
T KOG1408|consen 537 --------YDLVQTLDG--HSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQTLSKTTLYDMAVD 605 (1080)
T ss_pred --------cchhhhhcc--cccceeEEEEeecCCceEEEeccCchhhhe-ehhccccCceeccccccccccceEEEeeeC
Confidence 222333555 99999999999887 5566666 655443 3321 111112221 23468999999
Q ss_pred cCCCcEEEEEeCCCeEEEEEccCCeEeEEecc---cCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCccccEEEecC
Q 001790 882 PQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKG---HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIP 958 (1012)
Q Consensus 882 p~d~~~las~~~dg~v~iwd~~~~~~~~~~~~---h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~ 958 (1012)
| ..+++++++.|++|+||++++|+..+.|++ |.+....+...|.|.|||+...|+++.++|..+|+++.. .
T Consensus 606 p-~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~-----m 679 (1080)
T KOG1408|consen 606 P-TSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ-----M 679 (1080)
T ss_pred C-CcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhh-----h
Confidence 9 999999999999999999999999999975 667788899999999999999999999999999996544 4
Q ss_pred CCCCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCC
Q 001790 959 AGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASK 993 (1012)
Q Consensus 959 ~~~~~~~v~~l~fs~d~~~l~~~-~d~~i~vwd~~~ 993 (1012)
.||. ..|+.+.|++|-++|++. +||.|.||.+..
T Consensus 680 ~GHs-E~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 680 TGHS-EAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred cCcc-hheeeeeecccchhheeecCCceEEEEECch
Confidence 5665 789999999999999997 799999999875
No 24
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.6e-37 Score=289.27 Aligned_cols=249 Identities=18% Similarity=0.230 Sum_probs=228.7
Q ss_pred eeccCCCcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEE
Q 001790 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1012)
Q Consensus 400 ~~~~~h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~v 479 (1012)
++|+||.+.|.++.|++|+++|++++.||.+.|||.-+..... .++-....|..++|+|.|+ ++|+|+-|+...|
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSI 123 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEE
Confidence 4599999999999999999999999999999999999876555 4556788999999999999 8999999999999
Q ss_pred EeCC-C------cceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEcc-CCC
Q 001790 480 WELS-G------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA-DGS 551 (1012)
Q Consensus 480 wd~~-~------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~~~ 551 (1012)
|+.+ . +..+.+.+|++.+.++.|.. | ..|++++.|.+..+||++++.....+.+|.+.|.++.++| +++
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--D-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEEcC--C-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence 9932 2 34467899999999999865 3 4789999999999999999999999999999999999999 999
Q ss_pred eEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCC
Q 001790 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN 631 (1012)
Q Consensus 552 ~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1012)
.+++|+. |...++||++.+.++++|.+|.. .|++++|.|+|.-+++|++|++.++||++..+.+..+.......+
T Consensus 201 tFvSg~c----D~~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~g 275 (343)
T KOG0286|consen 201 TFVSGGC----DKSAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICG 275 (343)
T ss_pred eEEeccc----ccceeeeeccCcceeEeeccccc-ccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCC
Confidence 9999985 99999999999999999999988 899999999999999999999999999999999999988887889
Q ss_pred cceeEeecCCCEEEEEECCCcEEEEEccCC
Q 001790 632 LPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1012)
Q Consensus 632 v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~ 661 (1012)
|++++||..|++|..|..|.++.+||.-.+
T Consensus 276 itSv~FS~SGRlLfagy~d~~c~vWDtlk~ 305 (343)
T KOG0286|consen 276 ITSVAFSKSGRLLFAGYDDFTCNVWDTLKG 305 (343)
T ss_pred ceeEEEcccccEEEeeecCCceeEeecccc
Confidence 999999999999999999999999997654
No 25
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.3e-35 Score=311.13 Aligned_cols=505 Identities=16% Similarity=0.233 Sum_probs=359.0
Q ss_pred CCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001790 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1012)
Q Consensus 343 h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 422 (1012)
.+..|..++|+|... ++.++-..|.|++||.+-+.++.. |.+|.++|..++|+|++.+++
T Consensus 8 kSsRvKglsFHP~rP-wILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qplFV 67 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPLFV 67 (1202)
T ss_pred ccccccceecCCCCC-EEEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCeEE
Confidence 356899999999999 577888899999999999988764 888999999999999999999
Q ss_pred EEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCCccCEEEEe
Q 001790 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1012)
Q Consensus 423 s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~v~~~~ 501 (1012)
+|+.|-.|+||++++.+++. ++.||-..|+.+.|++.-. +++|+|+|.+|+||+ .+++++..+.||...|.|..
T Consensus 68 SGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq 142 (1202)
T KOG0292|consen 68 SGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ 142 (1202)
T ss_pred ecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence 99999999999999988776 7899999999999999877 999999999999999 99999999999999999999
Q ss_pred ccccCCceEEEEEecCCeEEEEEcCCCC-----------------------------ceeeecCCCCcEEEEEEccCCCe
Q 001790 502 PHHKENIQFIFSTAIDGKIKAWLYDTMG-----------------------------SRVDYDAPGHWCTTMLYSADGSR 552 (1012)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~-----------------------------~~~~~~~~~~~v~~~~~s~~~~~ 552 (1012)
|+|.. .+++++|-|.+||+||+...+ ....+.+|...|+.++|+|.-..
T Consensus 143 FhptE--DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpl 220 (1202)
T KOG0292|consen 143 FHPTE--DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPL 220 (1202)
T ss_pred cCCcc--ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcce
Confidence 99976 489999999999999985311 11245678889999999999999
Q ss_pred EEEeeecCCCCCcEEEEeCCCCe--eeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCC
Q 001790 553 LFSCGTSKDGDSFLVEWNESEGT--IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP 630 (1012)
Q Consensus 553 l~~~~~~~~~~~~i~lwd~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (1012)
+++|+ .|..|++|....-+ .+.+..+|.+ .|.++-|+|..+.+++.|+|+.|++||+...+.++.+.....
T Consensus 221 iVSG~----DDRqVKlWrmnetKaWEvDtcrgH~n-nVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrend-- 293 (1202)
T KOG0292|consen 221 IVSGA----DDRQVKLWRMNETKAWEVDTCRGHYN-NVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREND-- 293 (1202)
T ss_pred EEecC----CcceeeEEEeccccceeehhhhcccC-CcceEEecCccceeEecCCCccEEEEecccccceeeeeccCC--
Confidence 99998 58999999876544 3556778887 899999999999999999999999999999999998875543
Q ss_pred CcceeEeecCCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeeccccccccccCCCCCccccccCCCC
Q 001790 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVR 710 (1012)
Q Consensus 631 ~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~ 710 (1012)
..+.++.+|..+++|.|.+. .+.+|.+...... .+++-+ .
T Consensus 294 RFW~laahP~lNLfAAgHDs-Gm~VFkleRErpa------------------~~v~~n--~------------------- 333 (1202)
T KOG0292|consen 294 RFWILAAHPELNLFAAGHDS-GMIVFKLERERPA------------------YAVNGN--G------------------- 333 (1202)
T ss_pred eEEEEEecCCcceeeeecCC-ceEEEEEcccCce------------------EEEcCC--E-------------------
Confidence 78999999999988887654 5556665432111 111111 1
Q ss_pred CCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEee--ccCee
Q 001790 711 PSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG--SNGVQ 788 (1012)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~--~dg~i 788 (1012)
+...- |..|+.+|+.+.... ....+........+..++.++|....++.++ .+|..
T Consensus 334 ------------------LfYvk-d~~i~~~d~~t~~d~---~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y 391 (1202)
T KOG0292|consen 334 ------------------LFYVK-DRFIRSYDLRTQKDT---AVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEY 391 (1202)
T ss_pred ------------------EEEEc-cceEEeeeccccccc---eeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeE
Confidence 11111 456667776652211 1222222112346788999999766555543 34666
Q ss_pred EeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEEEcCCcEEEEEcCCCeEEEEE
Q 001790 789 KLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTF 868 (1012)
Q Consensus 789 ~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~ 868 (1012)
.++.+..... +... +. ... .......+-...++-.+..-++..+.+=++.+. ..+.+
T Consensus 392 ~L~~ipk~~~---~~~~------------~~---~~~----k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~-vtkkl 448 (1202)
T KOG0292|consen 392 ELVQIPKDSD---GVSD------------GK---DVK----KGTGEGALFVARNRFAVLDKSNEQVVIKNLKNK-VTKKL 448 (1202)
T ss_pred EEEEecCccc---ccCC------------ch---hhh----cCCCCceEEEEecceEEEEecCcceEEecccch-hhhcc
Confidence 6665543211 0000 00 000 112223333333322222223455555555432 22233
Q ss_pred cCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeEEecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 001790 869 MSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWE 948 (1012)
Q Consensus 869 ~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~ 948 (1012)
... ..+..+-+.. .|.+|+. ....|.++|++..+.+..+. ...|.-+.||+|+.+++--+. .+|.|.+.+- +
T Consensus 449 ~~~-~~~~~IF~ag-~g~lll~--~~~~v~lfdvQq~~~~~si~--~s~vkyvvws~dm~~vAll~K-h~i~i~~kkL-~ 520 (1202)
T KOG0292|consen 449 LLP-ESTDDIFYAG-TGNLLLR--SPDSVTLFDVQQKKKVGSIK--VSKVKYVVWSNDMSRVALLSK-HTITIADKKL-E 520 (1202)
T ss_pred cCc-ccccceeecc-CccEEEE--cCCeEEEEEeecceEEEEEe--cCceeEEEEcCccchhhhccc-ceEEEEecch-h
Confidence 221 2344555555 6665543 35579999999988887776 567889999999988887764 4688887643 1
Q ss_pred ccccEEEecCCCCCCCCceEEEEcCCCCEEEEE
Q 001790 949 KRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV 981 (1012)
Q Consensus 949 ~~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~ 981 (1012)
.+.+ -|..-.|.+-+|..||-+|.+.
T Consensus 521 l~~s-------ihEtiriksgawde~gVfiYtT 546 (1202)
T KOG0292|consen 521 LLCS-------IHETIRIKSGAWDEDGVFIYTT 546 (1202)
T ss_pred heec-------chheeEeeeceeccCceEEEEe
Confidence 1111 1112456677788887777664
No 26
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.7e-36 Score=275.72 Aligned_cols=296 Identities=15% Similarity=0.224 Sum_probs=253.7
Q ss_pred ceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCe--eeeeecCCCC
Q 001790 508 IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT--IKRTYAGFRK 585 (1012)
Q Consensus 508 ~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~--~~~~~~~~~~ 585 (1012)
.-+|++++.|.+||+|...++.+..++....+.|+.+.+.||++.|++++ ...|++||++++. ++.+|.+|.+
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~k 84 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHTK 84 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccCC
Confidence 35899999999999999999999999999999999999999999999997 7889999999865 5889999987
Q ss_pred CcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCCceee
Q 001790 586 KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSL 665 (1012)
Q Consensus 586 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~ 665 (1012)
.|.++.|..+|+++++|++||+++|||++...+.+.+.. ..+|+++..+|+...|++|..+|.|++||+.+.. +.
T Consensus 85 -NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~---~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~-c~ 159 (311)
T KOG0315|consen 85 -NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH---NSPVNTVVLHPNQTELISGDQSGNIRVWDLGENS-CT 159 (311)
T ss_pred -ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccC---CCCcceEEecCCcceEEeecCCCcEEEEEccCCc-cc
Confidence 899999999999999999999999999999666666654 3589999999999999999999999999997651 11
Q ss_pred ecccCCccccccCccceeeeccccccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeE
Q 001790 666 RAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAE 745 (1012)
Q Consensus 666 ~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~ 745 (1012)
..
T Consensus 160 ~~------------------------------------------------------------------------------ 161 (311)
T KOG0315|consen 160 HE------------------------------------------------------------------------------ 161 (311)
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred EeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeeccCeeEeeeccccccCCCCCccccccceeeccCCCceeeecc
Q 001790 746 IVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDV 825 (1012)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 825 (1012)
.+|+ ....|.++.+.|||+.++++...|...+|++-.... .+...-...+
T Consensus 162 ----------liPe---~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~-----------------~s~l~P~~k~ 211 (311)
T KOG0315|consen 162 ----------LIPE---DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQT-----------------ASELEPVHKF 211 (311)
T ss_pred ----------cCCC---CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCc-----------------cccceEhhhe
Confidence 1122 345789999999999999999999999998765221 1111111123
Q ss_pred cCCCCCCCEeEEEEeeCCCEEEEEc-CCcEEEEEcCCC-eEEEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEcc
Q 001790 826 AGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTF-KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR 903 (1012)
Q Consensus 826 ~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~lwd~~~~-~~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~ 903 (1012)
+. |...+..+.+|||+++||+++ |.+++||+.++. +.-..+.+|...+..++||. |++||++|+.|+.+++|++.
T Consensus 212 ~a--h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 212 QA--HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLS 288 (311)
T ss_pred ec--ccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccc
Confidence 33 899999999999999999998 999999999988 66678889999999999999 99999999999999999999
Q ss_pred CCeEeEEecccCCCeEEEEEc
Q 001790 904 VDEVKSKLKGHQKRITGLAFS 924 (1012)
Q Consensus 904 ~~~~~~~~~~h~~~V~~l~~s 924 (1012)
.++.+..+.+|.....|++..
T Consensus 289 ~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 289 AGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred cCceeeecCCcccccEEEEee
Confidence 999999999999988888764
No 27
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-36 Score=292.56 Aligned_cols=292 Identities=21% Similarity=0.340 Sum_probs=266.4
Q ss_pred CccceEeecCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEE
Q 001790 334 PRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1012)
Q Consensus 334 ~~~~~~~~~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 413 (1012)
|.....+.+|..+|+.+-|+|+-. ++++++.|++|++||..+|+.+.. ++||.+.|.+|+
T Consensus 98 p~l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~-------------------LrGHt~sv~di~ 157 (406)
T KOG0295|consen 98 PNLVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERS-------------------LRGHTDSVFDIS 157 (406)
T ss_pred CCchhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhh-------------------hhccccceeEEE
Confidence 355566677999999999999998 899999999999999999998654 899999999999
Q ss_pred EccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecC
Q 001790 414 WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG 492 (1012)
Q Consensus 414 ~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~ 492 (1012)
|+..|++||+++.|-.+++||.++- ......+.+|...|.+++|-|.|. ++++++.|.+|+.|+ .+|.++.+|.+
T Consensus 158 ~~a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~ 233 (406)
T KOG0295|consen 158 FDASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPG 233 (406)
T ss_pred EecCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccC
Confidence 9999999999999999999999873 333336789999999999999998 899999999999999 99999999999
Q ss_pred CccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccC---------------CCeEEEee
Q 001790 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD---------------GSRLFSCG 557 (1012)
Q Consensus 493 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~---------------~~~l~~~~ 557 (1012)
|...|..+.. ..||.++++++.|.++++|-+.++.+...+..|..+|.+++|.|. +.++.+++
T Consensus 234 h~ewvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S 311 (406)
T KOG0295|consen 234 HSEWVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS 311 (406)
T ss_pred chHhEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec
Confidence 9999999987 458899999999999999999999999999999999999999764 24666766
Q ss_pred ecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEe
Q 001790 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (1012)
Q Consensus 558 ~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 637 (1012)
.|++|++||+.++.++.++.+|.. .|..++|+|.|++|+++.+|+++++||++++++...+..+.+ -++++.|
T Consensus 312 ----rDktIk~wdv~tg~cL~tL~ghdn-wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h--fvt~lDf 384 (406)
T KOG0295|consen 312 ----RDKTIKIWDVSTGMCLFTLVGHDN-WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH--FVTSLDF 384 (406)
T ss_pred ----ccceEEEEeccCCeEEEEEecccc-eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc--eeEEEec
Confidence 599999999999999999999987 899999999999999999999999999999999999997766 7899999
Q ss_pred ecCCCEEEEEECCCcEEEEEc
Q 001790 638 SKEGNLLAVTTADNGFKILAN 658 (1012)
Q Consensus 638 s~~g~~l~~~~~dg~i~iwd~ 658 (1012)
+.+..++++|+-|.++++|..
T Consensus 385 h~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 385 HKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCCCceEEeccccceeeeeec
Confidence 999999999999999999963
No 28
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-34 Score=297.85 Aligned_cols=437 Identities=16% Similarity=0.233 Sum_probs=332.1
Q ss_pred ccCCCcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe
Q 001790 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1012)
Q Consensus 402 ~~~h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd 481 (1012)
+..|+..|.++.|+|...+++++-.+|.|.|||.++...++ .+.-...+|++..|-+--+ ++++|++|..|+||+
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 45589999999999999999999999999999999988777 4666788999999998877 899999999999999
Q ss_pred -CCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCC-CceeeecCCCCcEEEEEEcc-CCCeEEEeee
Q 001790 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSA-DGSRLFSCGT 558 (1012)
Q Consensus 482 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 558 (1012)
.+++.+..|..|.+.|.+++.||.. .++++++.|-+|++||.+.. .+...+.+|.+.|..++|.| |.+.+++++.
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 9999999999999999999999965 69999999999999999864 45678999999999999999 5678888885
Q ss_pred cCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCC--CEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeE
Q 001790 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ--NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1012)
Q Consensus 559 ~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (1012)
|++|++|.+.+..+..++.+|.. .|+++.+-+.| .++++|+.|..|+|||..+..+++++..|.+ .|..+.
T Consensus 162 ----DrTVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~v~ 234 (794)
T KOG0276|consen 162 ----DRTVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSFVF 234 (794)
T ss_pred ----cccEEEEEcCCCCCceeeecccc-CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceEEE
Confidence 99999999999999999999988 89999997744 7999999999999999999999999986655 899999
Q ss_pred eecCCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeeccccccccccCCCCCccccccCCCCCCcccc
Q 001790 637 FSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIIN 716 (1012)
Q Consensus 637 ~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1012)
|+|.-..+++|+.||++|||+..+-. ....+.
T Consensus 235 fhp~lpiiisgsEDGTvriWhs~Ty~-lE~tLn----------------------------------------------- 266 (794)
T KOG0276|consen 235 FHPELPIIISGSEDGTVRIWNSKTYK-LEKTLN----------------------------------------------- 266 (794)
T ss_pred ecCCCcEEEEecCCccEEEecCccee-hhhhhh-----------------------------------------------
Confidence 99999999999999999999876531 110000
Q ss_pred CCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeeccCeeEeeecccc
Q 001790 717 GVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRN 796 (1012)
Q Consensus 717 ~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~ 796 (1012)
+ .-.++++++..+.+..++.|..+|.+.+=
T Consensus 267 --------------------------~-------------------gleRvW~I~~~k~~~~i~vG~Deg~i~v~----- 296 (794)
T KOG0276|consen 267 --------------------------Y-------------------GLERVWCIAAHKGDGKIAVGFDEGSVTVK----- 296 (794)
T ss_pred --------------------------c-------------------CCceEEEEeecCCCCeEEEeccCCcEEEE-----
Confidence 0 22456666666666667777777766541
Q ss_pred ccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEEEcC--CcEEEE------EcCCCeEEE--
Q 001790 797 EQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG--GKISLF------NMMTFKVMT-- 866 (1012)
Q Consensus 797 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~sd--g~i~lw------d~~~~~~~~-- 866 (1012)
.......+.+++.|+.+-+... ..+.+- ++..|+.+.
T Consensus 297 ---------------------------------lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~Ls 343 (794)
T KOG0276|consen 297 ---------------------------------LGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLS 343 (794)
T ss_pred ---------------------------------ccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccch
Confidence 1111222344455544433221 111111 333333321
Q ss_pred --EEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeEEecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001790 867 --TFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSI 944 (1012)
Q Consensus 867 --~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~ 944 (1012)
.+..-.-....++-+| +|+++++++ ||.-.||..-..+ ..+.+.-....|++|....+.--.++.|+++
T Consensus 344 vKeLgs~eiyPq~L~hsP-NGrfV~Vcg-dGEyiIyTala~R-----nK~fG~~~eFvw~~dsne~avRes~~~vki~-- 414 (794)
T KOG0276|consen 344 VKELGSVEIYPQTLAHSP-NGRFVVVCG-DGEYIIYTALALR-----NKAFGSGLEFVWAADSNEFAVRESNGNVKIF-- 414 (794)
T ss_pred hhhccccccchHHhccCC-CCcEEEEec-CccEEEEEeeehh-----hcccccceeEEEcCCCCeEEEEecCCceEEE--
Confidence 1111111234578899 998877554 8888888742221 1244556778899997788877778889988
Q ss_pred CCCCccccEEEecCCCCCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEeecC
Q 001790 945 DTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQVGS 1002 (1012)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~ 1002 (1012)
+.++..+.+... ..+.+--.|.+|.+.+++.+++||.++++.++++..
T Consensus 415 knfke~ksi~~~----------~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v 462 (794)
T KOG0276|consen 415 KNFKEHKSIRPD----------MSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEV 462 (794)
T ss_pred ecceeccccccc----------cceeeecCCceEEEEeCCeEEEEEcccceEEEEEee
Confidence 666654443222 113334457777777899999999999999999863
No 29
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=4.1e-33 Score=297.64 Aligned_cols=560 Identities=15% Similarity=0.164 Sum_probs=406.8
Q ss_pred EEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEECCCe
Q 001790 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHL 429 (1012)
Q Consensus 350 ~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~ 429 (1012)
..+..-|+.++++.+-+.+..+||.+.-..+.- -..+...|+|++-.. .++.+++. ..
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~--~~vy~A~g-~~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDK--DYVYVASG-NK 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecC--ceEEEecC-cE
Confidence 555556666888888899999999876555431 234778899998654 44444433 33
Q ss_pred EEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCC-cce----eeecCCccCEEEEecc
Q 001790 430 IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKL----FNFEGHEAPVYSICPH 503 (1012)
Q Consensus 430 v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~-~~~----~~~~~h~~~v~~~~~~ 503 (1012)
|.+|. .|+.++. .+.+|.+.|.-+.- -|. .++++..++.+.+|+ ..+ ... .-++...+.|+++. |
T Consensus 97 i~~~~--rgk~i~~--~~~~~~a~v~~l~~--fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H 167 (910)
T KOG1539|consen 97 IYAYA--RGKHIRH--TTLLHGAKVHLLLP--FGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H 167 (910)
T ss_pred EEEEE--ccceEEE--EeccccceEEEEee--ecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence 66654 4444443 46678877777654 366 788999999999999 442 221 11222223377764 5
Q ss_pred ccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCC
Q 001790 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583 (1012)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~ 583 (1012)
|+.--+.++.|+.+|.+.+|++++++.+.++......|+++.-+|-=..++.|. .+|+|.+++++.++.+.+|+..
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~----~~G~ViifNlK~dkil~sFk~d 243 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGL----ENGTVIIFNLKFDKILMSFKQD 243 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEec----cCceEEEEEcccCcEEEEEEcc
Confidence 554445689999999999999999999999999999999999999988999988 5999999999999999999876
Q ss_pred CCCcceEEEEecCCCEEEE-EeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCCc
Q 001790 584 RKKSNGVVQFDTTQNHFLA-VGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGL 662 (1012)
Q Consensus 584 ~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~ 662 (1012)
.+ .|+.++|.-||+.+++ |+..|.+.+||++..+.+..+.. .|.+.|....|-|....+++++.|+.+++|=..++.
T Consensus 244 ~g-~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~n-ah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~d 321 (910)
T KOG1539|consen 244 WG-RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRN-AHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGD 321 (910)
T ss_pred cc-ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeec-cccCCcccceecCCCceEeeccCCCceeEEEeeCCC
Confidence 44 8999999999976555 55679999999999888777653 234578999999999999999999999888666543
Q ss_pred eeeecccCCccccccCccceeeec-cccccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCc
Q 001790 663 RSLRAVENPPFEALRTPIESVALK-VSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPW 741 (1012)
Q Consensus 663 ~~~~~~~~~~~~~~~~~v~~v~~s-~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 741 (1012)
-..+.++. ..+|..|..++.|- .+ |..+.+++.|++.+.+
T Consensus 322 g~pR~LR~--R~GHs~Pp~~irfy~~~-------------------------------------g~~ilsa~~Drt~r~f 362 (910)
T KOG1539|consen 322 GVPRLLRS--RGGHSAPPSCIRFYGSQ-------------------------------------GHFILSAKQDRTLRSF 362 (910)
T ss_pred Ccchheee--ccCCCCCchheeeeccC-------------------------------------cEEEEecccCcchhhh
Confidence 22222222 22344556666654 33 3344555666666655
Q ss_pred ceeEEeecCceEE---------EecC-CCCCCCCceEEEEEecCc----ceEEEee-ccCeeEeeeccccccCCCCCccc
Q 001790 742 QLAEIVDSGQCRL---------VTMP-ESTDTSSKVVRLLYTNSA----VGLLALG-SNGVQKLWKWHRNEQNPSGKATA 806 (1012)
Q Consensus 742 ~~~~~~~~~~~~~---------~~~~-~~~~~~~~i~~l~~s~~g----~~l~~~~-~dg~i~~w~~~~~~~~~~g~~~~ 806 (1012)
.+........+.. .... .....-.+|..+++.... ..++++. .+...+.|++....
T Consensus 363 s~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~--------- 433 (910)
T KOG1539|consen 363 SVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKT--------- 433 (910)
T ss_pred hhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcc---------
Confidence 5433211111111 0000 001123456666665432 1233333 45677777765421
Q ss_pred cccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEEEc-CCcEEEEEcCCCeEEEEE---cCCCCCeeEEEEec
Q 001790 807 SAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTF---MSPPPASTFLAFHP 882 (1012)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~---~~~~~~i~~l~~sp 882 (1012)
.|+..-..-+.......+++++.|+.|++.+.|+ .|.|.+|++.+|-....+ ..|.++|+.++...
T Consensus 434 ----------~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~ 503 (910)
T KOG1539|consen 434 ----------SGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG 503 (910)
T ss_pred ----------cccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC
Confidence 1111111000011457799999999999999998 899999999999998888 48999999999988
Q ss_pred CCCcEEEEEeCCCeEEEEEccCCeEeEEecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCccccEEEecCCCCC
Q 001790 883 QDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKT 962 (1012)
Q Consensus 883 ~d~~~las~~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~ 962 (1012)
-++.+++++.+|-+.+||..+..++..+. -...++++..+....++|.+.+|-.|+++|+.+.+.+ ..+.||.
T Consensus 504 -~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvv-----R~f~gh~ 576 (910)
T KOG1539|consen 504 -TNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVV-----REFWGHG 576 (910)
T ss_pred -CCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhh-----HHhhccc
Confidence 78899999999999999999988888876 3456788888888889999999999999999997743 4456776
Q ss_pred CCCceEEEEcCCCCEEEEE-eCCeEEEEECCCceEEEeecC-CCeeEEEecC
Q 001790 963 PTGDTRVQFNADQVRMLVV-HETQLAIYDASKMERIRQVGS-PHICSIIFCN 1012 (1012)
Q Consensus 963 ~~~v~~l~fs~d~~~l~~~-~d~~i~vwd~~~~~~~~~~~~-~~i~~~~f~p 1012 (1012)
+.|++++|||||++|+++ .|++|++||+.++..+-.+.. ..+.++.|||
T Consensus 577 -nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SP 627 (910)
T KOG1539|consen 577 -NRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSP 627 (910)
T ss_pred -cceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECC
Confidence 899999999999999998 699999999999999999876 6788999998
No 30
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=6.2e-37 Score=300.54 Aligned_cols=341 Identities=21% Similarity=0.304 Sum_probs=272.8
Q ss_pred cCCCCCCCCCccccCCCChhhHhhhcCCCCCCccccccCCCcc-------cccCCCCCccceEeecC------CCceEEE
Q 001790 284 KHPRTPPTPGMVDYQNPDHEQLMKRLRPAPSAEEVTYSSSRHQ-------TWSLDDLPRTVAVSLHQ------GSTVISM 350 (1012)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~h------~~~V~~~ 350 (1012)
++.++....+.+|+.........++.-..+....+........ .|. ++........|-| +..|..+
T Consensus 24 ~rlrk~~~Rr~VDy~s~v~~~~~nR~~~~~~d~~~~~p~~~~~~~~~pp~~~~-~dp~~~~~tKf~h~s~NKvkc~V~~v 102 (464)
T KOG0284|consen 24 KRLRKPVARRTVDYNSPVCNYRQNRRWQYDRDRALLQPDSSYIIDLVPPSLYL-DDPSSAFTTKFVHTSSNKVKCPVNVV 102 (464)
T ss_pred ccccchhhhcccCCCcHHHHHHHHHhhcccccccccCCCchhhhcccChhhcc-CCcccccccceEeccccccccceeeE
Confidence 4444555577788887776655555433321111122111111 233 2222222222333 4589999
Q ss_pred EEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEECCCeE
Q 001790 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLI 430 (1012)
Q Consensus 351 ~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~v 430 (1012)
.|.|+|++ |++|+..|.+.+|+..+ ..|+ .++..|+.+|+++.||++|.++++|+.+|.|
T Consensus 103 ~WtPeGRR-Lltgs~SGEFtLWNg~~------fnFE-------------tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~i 162 (464)
T KOG0284|consen 103 RWTPEGRR-LLTGSQSGEFTLWNGTS------FNFE-------------TILQAHDSPVRTMKWSHNGTWMISGDKGGMI 162 (464)
T ss_pred EEcCCCce-eEeecccccEEEecCce------eeHH-------------HHhhhhcccceeEEEccCCCEEEEcCCCceE
Confidence 99999996 89999999999999632 2222 3477899999999999999999999999999
Q ss_pred EEEeecCCCcceeeeeeecc-ccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCCccCEEEEeccccCCc
Q 001790 431 QLYSYAGSNDLRQHSQIDAH-VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENI 508 (1012)
Q Consensus 431 ~vwd~~~~~~~~~~~~l~~h-~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~ 508 (1012)
++|+..-.. ++ .+.+| ...|++++|+|+.. .|++|+.||+|+||| ...+....+.||.-.|.++.|+|..
T Consensus 163 KyWqpnmnn-Vk---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~k-- 234 (464)
T KOG0284|consen 163 KYWQPNMNN-VK---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTK-- 234 (464)
T ss_pred Eecccchhh-hH---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCcc--
Confidence 999987532 33 24444 48999999999887 899999999999999 8888888899999999999999965
Q ss_pred eEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcc
Q 001790 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSN 588 (1012)
Q Consensus 509 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v 588 (1012)
.++++++.|..|++||.+++.++.++..|...|..+.|++++++|++++ +|..++++|+++.+.+.++++|.+ .+
T Consensus 235 gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~s----kD~~~kv~DiR~mkEl~~~r~Hkk-dv 309 (464)
T KOG0284|consen 235 GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGS----KDQSCKVFDIRTMKELFTYRGHKK-DV 309 (464)
T ss_pred ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEcc----CCceEEEEehhHhHHHHHhhcchh-hh
Confidence 5999999999999999999999999999999999999999999999999 599999999999999999999988 89
Q ss_pred eEEEEecCC-CEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEcc
Q 001790 589 GVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1012)
Q Consensus 589 ~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~ 659 (1012)
.++.|+|-. ..|.+|+.||.|..|.+...+++..+.. .|...|++++|+|=|..|++|+.|.++++|.-.
T Consensus 310 ~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~-AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 310 TSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP-AHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred eeeccccccccceeeccCCCceEEEeccccccccCCCc-ccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 999999954 6777899999999999986666665543 456689999999999999999999999999753
No 31
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=5.7e-35 Score=283.12 Aligned_cols=338 Identities=17% Similarity=0.243 Sum_probs=286.6
Q ss_pred eeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEE
Q 001790 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524 (1012)
Q Consensus 446 ~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd 524 (1012)
++..|++.|.+++.+|+.+ +++||+.|....+|+ .+|.....+.+|...|.++.|+. +|.+|++|+.+|.|++|+
T Consensus 59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh--dgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH--DGTLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEcc--CceEEEecCCCccEEEEE
Confidence 5889999999999999777 899999999999999 89999999999999999999976 778999999999999999
Q ss_pred cCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEe
Q 001790 525 YDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG 604 (1012)
Q Consensus 525 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 604 (1012)
..++.....+......+.-+.|+|.+..|++|+ .||.+.+|.+.++...+.+.+|.. ++++-.|.|+|+.++++.
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~----~DGsvWmw~ip~~~~~kv~~Gh~~-~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGS----TDGSVWMWQIPSQALCKVMSGHNS-PCTCGEFIPDGKRILTGY 209 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeec----CCCcEEEEECCCcceeeEecCCCC-CcccccccCCCceEEEEe
Confidence 999999998887788899999999999999998 599999999999989999999877 899999999999999999
Q ss_pred CCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceee
Q 001790 605 EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVA 684 (1012)
Q Consensus 605 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~ 684 (1012)
.||+|++|+..+++++..+....+ ....++.++..+..++.|+.++.+.+-+..+++.... ..
T Consensus 210 ~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~-~n--------------- 272 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNC-NN--------------- 272 (399)
T ss_pred cCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccceEEEe-cC---------------
Confidence 999999999999999998875543 3678999999999999999999988876655421110 00
Q ss_pred eccccccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCC
Q 001790 685 LKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTS 764 (1012)
Q Consensus 685 ~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 764 (1012)
T Consensus 273 -------------------------------------------------------------------------------- 272 (399)
T KOG0296|consen 273 -------------------------------------------------------------------------------- 272 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEEecCcceEEEeeccCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCC
Q 001790 765 SKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS 844 (1012)
Q Consensus 765 ~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 844 (1012)
+.+..+-.. .. .....|..+.+|..=.
T Consensus 273 ---------~~~~~l~~~------------------------------------------~e--~~~esve~~~~ss~lp 299 (399)
T KOG0296|consen 273 ---------GTVPELKPS------------------------------------------QE--ELDESVESIPSSSKLP 299 (399)
T ss_pred ---------CCCcccccc------------------------------------------ch--hhhhhhhhcccccccc
Confidence 000000000 00 0122344445555666
Q ss_pred EEEEEc-CCcEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeEEecccCCCeEEEEE
Q 001790 845 YVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAF 923 (1012)
Q Consensus 845 ~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~ 923 (1012)
+.|+|+ ||+|.|||+...++.+.+. |...|+.+.|-+ ..+|++++.||.|+.||.++|+++.++.||...|.+++.
T Consensus 300 L~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~l 376 (399)
T KOG0296|consen 300 LAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFAL 376 (399)
T ss_pred hhhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEE
Confidence 788998 9999999998887766665 788899999986 468889999999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCC
Q 001790 924 STSLNILVSSGADAQLCVWSID 945 (1012)
Q Consensus 924 spdg~~l~s~s~Dg~i~vwd~~ 945 (1012)
+|++++++|+|.|++.+|+++.
T Consensus 377 s~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 377 SPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999874
No 32
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2e-35 Score=295.37 Aligned_cols=336 Identities=16% Similarity=0.312 Sum_probs=281.2
Q ss_pred ccCCCcceEEEEEccCCC-EEEEEECCCeEEEEeecCC--Cc-----ceeeeeeec----cccCeEEEEEeCCCCceEEE
Q 001790 402 FKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGS--ND-----LRQHSQIDA----HVGAVNDLAFAYPNKLLCVV 469 (1012)
Q Consensus 402 ~~~h~~~V~~v~~spdg~-~las~~~d~~v~vwd~~~~--~~-----~~~~~~l~~----h~~~v~~l~~s~~~~~~~l~ 469 (1012)
+. |..+|.+.+|+|-.. .+++|+.|.+.++|++... .. ++....+.+ ....|++++|+.+|. .||
T Consensus 175 l~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~--~La 251 (524)
T KOG0273|consen 175 LR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGT--LLA 251 (524)
T ss_pred cc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCC--eEE
Confidence 44 999999999999555 9999999999999998741 11 110001111 235799999999999 899
Q ss_pred EEcCCCcEEEEeCCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccC
Q 001790 470 TCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD 549 (1012)
Q Consensus 470 s~~~d~~v~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~ 549 (1012)
+|+.||.+++|+..|..+.++..|.++|.++.|+. .|.+|++++.||++.+||..++.....+..+..+-..+.|-.+
T Consensus 252 tG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk--~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~ 329 (524)
T KOG0273|consen 252 TGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNK--KGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN 329 (524)
T ss_pred EeecCcEEEEEecCchhhhhhhccCCceEEEEEcC--CCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC
Confidence 99999999999999999999999999999999965 6689999999999999999999999989888887677888666
Q ss_pred CCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCC
Q 001790 550 GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629 (1012)
Q Consensus 550 ~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (1012)
.. +++++ .|+.|+++.+....++.++.+|++ .|.++.|.|.+..|++++.|++++||++........+..+.
T Consensus 330 ~~-F~ts~----td~~i~V~kv~~~~P~~t~~GH~g-~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hs-- 401 (524)
T KOG0273|consen 330 DE-FATSS----TDGCIHVCKVGEDRPVKTFIGHHG-EVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHS-- 401 (524)
T ss_pred ce-EeecC----CCceEEEEEecCCCcceeeecccC-ceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhc--
Confidence 54 45555 399999999999999999999887 89999999999999999999999999988776666665443
Q ss_pred CCcceeEeecCCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeeccccccccccCCCCCccccccCCC
Q 001790 630 PNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPV 709 (1012)
Q Consensus 630 ~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~ 709 (1012)
..|..+.|+|+|... |+
T Consensus 402 kei~t~~wsp~g~v~-----------~n---------------------------------------------------- 418 (524)
T KOG0273|consen 402 KEIYTIKWSPTGPVT-----------SN---------------------------------------------------- 418 (524)
T ss_pred cceeeEeecCCCCcc-----------CC----------------------------------------------------
Confidence 366677776654210 00
Q ss_pred CCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeeccCeeE
Q 001790 710 RPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQK 789 (1012)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~ 789 (1012)
T Consensus 419 -------------------------------------------------------------------------------- 418 (524)
T KOG0273|consen 419 -------------------------------------------------------------------------------- 418 (524)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEEEc-CCcEEEEEcCCCeEEEEE
Q 001790 790 LWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTF 868 (1012)
Q Consensus 790 ~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~ 868 (1012)
..++..+++++ |++|++||+..+.++.+|
T Consensus 419 --------------------------------------------------~~~~~~l~sas~dstV~lwdv~~gv~i~~f 448 (524)
T KOG0273|consen 419 --------------------------------------------------PNMNLMLASASFDSTVKLWDVESGVPIHTL 448 (524)
T ss_pred --------------------------------------------------CcCCceEEEeecCCeEEEEEccCCceeEee
Confidence 01233455555 899999999999999999
Q ss_pred cCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeEEecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001790 869 MSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSID 945 (1012)
Q Consensus 869 ~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~ 945 (1012)
..|..+|.+++|+| +++++|+|+.||.|.+|+.++++.++.+.+ .+.|..|+|+.+|.+|..+-.|+.+++-|++
T Consensus 449 ~kH~~pVysvafS~-~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 449 MKHQEPVYSVAFSP-NGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred ccCCCceEEEEecC-CCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 99999999999999 999999999999999999999999999885 4669999999999999999999999999875
No 33
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.6e-35 Score=270.14 Aligned_cols=283 Identities=16% Similarity=0.252 Sum_probs=237.2
Q ss_pred CCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEECCCeEEEEee
Q 001790 356 HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSY 435 (1012)
Q Consensus 356 g~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~v~vwd~ 435 (1012)
..-+|++++.|.+|++|...+|.+..+ +...++.|..+...||++.||+++... ||+||+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD~ 68 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYDL 68 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCCe-eEEEEc
Confidence 334899999999999999999999864 444577899999999999999987654 999999
Q ss_pred cCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCCccCEEEEeccccCCceEEEEE
Q 001790 436 AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFST 514 (1012)
Q Consensus 436 ~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 514 (1012)
.++..- ...++.+|...|+++.|..+|+ .++|||+||+++||| ..-.+ .....|..+|+++..+|.. .-|++|
T Consensus 69 ~S~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~-qR~~~~~spVn~vvlhpnQ--teLis~ 142 (311)
T KOG0315|consen 69 NSNNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSC-QRNYQHNSPVNTVVLHPNQ--TELISG 142 (311)
T ss_pred cCCCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCccc-chhccCCCCcceEEecCCc--ceEEee
Confidence 998764 4457999999999999999999 899999999999999 55333 4444578999999998854 679999
Q ss_pred ecCCeEEEEEcCCCCceeeecC-CCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCe------eeeeecCCCCCc
Q 001790 515 AIDGKIKAWLYDTMGSRVDYDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT------IKRTYAGFRKKS 587 (1012)
Q Consensus 515 ~~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~------~~~~~~~~~~~~ 587 (1012)
..+|.|++||+....+...+.. ....|.++++.|||.+++.+. ..|..++|++-+.+ ++..++.|.. .
T Consensus 143 dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n----nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~-~ 217 (311)
T KOG0315|consen 143 DQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN----NKGNCYVWRLLNHQTASELEPVHKFQAHNG-H 217 (311)
T ss_pred cCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec----CCccEEEEEccCCCccccceEhhheecccc-e
Confidence 9999999999988766655443 345899999999999999887 58999999987643 4556677766 7
Q ss_pred ceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCCceeeec
Q 001790 588 NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRA 667 (1012)
Q Consensus 588 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~ 667 (1012)
+..+.+|||+++|++++.|.+++||+.++. ....+...++...++.++||.||++|++|+.|+.+++|++..++ ..+.
T Consensus 218 il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k-~v~q 295 (311)
T KOG0315|consen 218 ILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK-EVRQ 295 (311)
T ss_pred EEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCc-eeee
Confidence 888999999999999999999999999988 44455555666789999999999999999999999999999984 3444
Q ss_pred ccCC
Q 001790 668 VENP 671 (1012)
Q Consensus 668 ~~~~ 671 (1012)
..+|
T Consensus 296 y~gh 299 (311)
T KOG0315|consen 296 YQGH 299 (311)
T ss_pred cCCc
Confidence 4444
No 34
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6.4e-35 Score=272.68 Aligned_cols=294 Identities=14% Similarity=0.253 Sum_probs=241.2
Q ss_pred eeeeecCCCCCcceEEEEecC-CCEEEEEeCCCcEEEEeCCC-----CeeEEEEecCCCCCCcceeEeecCCCEEEEEEC
Q 001790 576 IKRTYAGFRKKSNGVVQFDTT-QNHFLAVGEDSQIKFWDMDN-----VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (1012)
Q Consensus 576 ~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~ 649 (1012)
...++.+|.+ .|..++..+. .+.+++++.|..+.+|++.. |..++.+..|.| .|..++.++||++.++++.
T Consensus 7 l~~tl~gh~d-~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH--~v~dv~~s~dg~~alS~sw 83 (315)
T KOG0279|consen 7 LRGTLEGHTD-WVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSH--FVSDVVLSSDGNFALSASW 83 (315)
T ss_pred eeeeecCCCc-eEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccce--EecceEEccCCceEEeccc
Confidence 4456778877 8888988887 46788899999999998754 666778887666 8999999999999999999
Q ss_pred CCcEEEEEccCCceeeecccCCccccccCccceeeeccccccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCc
Q 001790 650 DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPR 729 (1012)
Q Consensus 650 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 729 (1012)
|+++++||+.++ +..+.+.+
T Consensus 84 D~~lrlWDl~~g-~~t~~f~G----------------------------------------------------------- 103 (315)
T KOG0279|consen 84 DGTLRLWDLATG-ESTRRFVG----------------------------------------------------------- 103 (315)
T ss_pred cceEEEEEecCC-cEEEEEEe-----------------------------------------------------------
Confidence 999999999887 33332222
Q ss_pred ccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeeccCeeEeeeccccccCCCCCcccccc
Q 001790 730 TVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAV 809 (1012)
Q Consensus 730 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~ 809 (1012)
|...|.+++|++|.+.+++++.|.+|++|+.-.
T Consensus 104 ---------------------------------H~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-------------- 136 (315)
T KOG0279|consen 104 ---------------------------------HTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-------------- 136 (315)
T ss_pred ---------------------------------cCCceEEEEecCCCceeecCCCcceeeeeeecc--------------
Confidence 778899999999999999999999999997432
Q ss_pred ceeeccCCCceeeecccCCCCCCCEeEEEEeeC--CCEEEEEc-CCcEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCc
Q 001790 810 PQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN--DSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNN 886 (1012)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--g~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~ 886 (1012)
+.... ...+ .+.+.|+|+.|+|+ ..++++++ |++|++||+.+.+....+.+|.+.++.+++|| ||.
T Consensus 137 --------~ck~t-~~~~-~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSp-DGs 205 (315)
T KOG0279|consen 137 --------VCKYT-IHED-SHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSP-DGS 205 (315)
T ss_pred --------cEEEE-EecC-CCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECC-CCC
Confidence 11111 1111 13789999999998 67888888 99999999999999999999999999999999 999
Q ss_pred EEEEEeCCCeEEEEEccCCeEeEEecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCccccEEEecCCC---CCC
Q 001790 887 IIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAG---KTP 963 (1012)
Q Consensus 887 ~las~~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~---~~~ 963 (1012)
+.++|+.||.+.+||++.++.+..+. |...|.+++|+|+.-.|+.+. +..|+|||++++..+..+.+..... ...
T Consensus 206 lcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~ 283 (315)
T KOG0279|consen 206 LCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGD 283 (315)
T ss_pred EEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCC
Confidence 99999999999999999999988876 889999999999976666554 5569999999988776655443222 011
Q ss_pred CCceEEEEcCCCCEEEEE-eCCeEEEEECC
Q 001790 964 TGDTRVQFNADQVRMLVV-HETQLAIYDAS 992 (1012)
Q Consensus 964 ~~v~~l~fs~d~~~l~~~-~d~~i~vwd~~ 992 (1012)
....+++||+||..|+++ .|+.|++|.+.
T Consensus 284 ~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 284 PICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 345789999999999999 89999999874
No 35
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=6.9e-34 Score=297.42 Aligned_cols=517 Identities=14% Similarity=0.193 Sum_probs=364.0
Q ss_pred EEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCC---EEEEEEC
Q 001790 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN---YVGVAFT 426 (1012)
Q Consensus 350 ~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~---~las~~~ 426 (1012)
..|.|.+ ++|.|. ...|.+||..+.... ..+.||.++|+|+.|-|+.+ ++++|+.
T Consensus 20 ~sw~~~~--~vafGa-~~~Iav~dp~k~~i~-------------------t~l~GH~a~VnC~~~l~~s~~~a~~vsG~s 77 (764)
T KOG1063|consen 20 SSWGPGG--LVAFGA-GPAIAVADPEKILIV-------------------TTLDGHVARVNCVHWLPTSEIVAEMVSGDS 77 (764)
T ss_pred ccccccc--eEEecC-CceEEEeCcccceeE-------------------EeccCCccceEEEEEcccccccceEEEccC
Confidence 3446665 467665 679999997654322 33889999999999999888 8999999
Q ss_pred CCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEeC-CCc--ceeeecCCccC--EEEEe
Q 001790 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGR--KLFNFEGHEAP--VYSIC 501 (1012)
Q Consensus 427 d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd~-~~~--~~~~~~~h~~~--v~~~~ 501 (1012)
|+.|++|.+.. +.+....++.+|...+.|+.- .-. ...+...|+++.+||. ..+ +...+.-..+. ..|++
T Consensus 78 D~~v~lW~l~~-~~~~~i~~~~g~~~~~~cv~a--~~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~ 152 (764)
T KOG1063|consen 78 DGRVILWKLRD-EYLIKIYTIQGHCKECVCVVA--RSS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLA 152 (764)
T ss_pred CCcEEEEEEee-hheEEEEeecCcceeEEEEEe--eee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHh
Confidence 99999999994 445555678787766655542 222 2223367999999995 333 22222222222 23444
Q ss_pred ccccCCceEEEEEecCCeEEEEEcCCC--CceeeecCCCCcEEEEEEccCCC---eEEEeeecCCCCCcEEEEeCCCCe-
Q 001790 502 PHHKENIQFIFSTAIDGKIKAWLYDTM--GSRVDYDAPGHWCTTMLYSADGS---RLFSCGTSKDGDSFLVEWNESEGT- 575 (1012)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~~~~~~~~i~lwd~~~~~- 575 (1012)
+.++++.-+++.|+.+..|.++.-.+. .....+.+|.+.|.+++|...+. +|++++ +|..|+||.+.-+.
T Consensus 153 ~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~S----QD~yIRiW~i~~~~~ 228 (764)
T KOG1063|consen 153 ALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSS----QDRYIRIWRIVLGDD 228 (764)
T ss_pred hhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecC----CceEEEEEEEEecCC
Confidence 555434345566677778888754432 34567889999999999987654 455555 79999999764322
Q ss_pred --------------------ee----------eeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCC--eeEEEE
Q 001790 576 --------------------IK----------RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV--NILTST 623 (1012)
Q Consensus 576 --------------------~~----------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~ 623 (1012)
.. ..+.||.+ -|.++.|+|.+..|++++.|.++.+|...+. --+...
T Consensus 229 ~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~v 307 (764)
T KOG1063|consen 229 EDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVV 307 (764)
T ss_pred ccccccccccccccCCceeeeeeeEEEEEehhhhhcCccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEEEE
Confidence 11 11236766 8999999999999999999999999987654 222222
Q ss_pred e---cCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeeccccccccccCCCCC
Q 001790 624 D---AEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPAN 700 (1012)
Q Consensus 624 ~---~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~ 700 (1012)
. ..+.........|+|++..+++-+..|..++|...+..
T Consensus 308 RlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~-------------------------------------- 349 (764)
T KOG1063|consen 308 RLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKT-------------------------------------- 349 (764)
T ss_pred EeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCcc--------------------------------------
Confidence 1 11223347889999999999999999999999732210
Q ss_pred ccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEE
Q 001790 701 CKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLL 780 (1012)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~ 780 (1012)
.|... +...+|.+.|..++++|.|.+|+
T Consensus 350 ---------------------------------------~w~~~-------------~~iSGH~~~V~dv~W~psGeflL 377 (764)
T KOG1063|consen 350 ---------------------------------------FWTQE-------------PVISGHVDGVKDVDWDPSGEFLL 377 (764)
T ss_pred ---------------------------------------ceeec-------------cccccccccceeeeecCCCCEEE
Confidence 11110 11134889999999999999999
Q ss_pred EeeccCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEEEcC-CcEEEEEc
Q 001790 781 ALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG-GKISLFNM 859 (1012)
Q Consensus 781 ~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~sd-g~i~lwd~ 859 (1012)
+++.|-+-|+|---..+. -|. .+ -+.+-|...++|++|-+....+++|.| ..+|+|+.
T Consensus 378 svs~DQTTRlFa~wg~q~-------------~wH-----Ei---aRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~a 436 (764)
T KOG1063|consen 378 SVSLDQTTRLFARWGRQQ-------------EWH-----EI---ARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEA 436 (764)
T ss_pred Eeccccceeeeccccccc-------------cee-----ee---cccccccccceeeehccCCceeeecccceeeeeecC
Confidence 999999999874211000 011 11 111238888999998875555666654 55777755
Q ss_pred CC-------------------------------------------CeE--------------------------------
Q 001790 860 MT-------------------------------------------FKV-------------------------------- 864 (1012)
Q Consensus 860 ~~-------------------------------------------~~~-------------------------------- 864 (1012)
.. |..
T Consensus 437 Pk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwP 516 (764)
T KOG1063|consen 437 PKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWP 516 (764)
T ss_pred cHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccch
Confidence 20 000
Q ss_pred -EEEEcCCCCCeeEEEEecCCCcEEEEEeCCC-----eEEEEEccCCeEeEEecccCCCeEEEEEcCCCCEEEEEeCCCc
Q 001790 865 -MTTFMSPPPASTFLAFHPQDNNIIAIGTEDS-----TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQ 938 (1012)
Q Consensus 865 -~~~~~~~~~~i~~l~~sp~d~~~las~~~dg-----~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~ 938 (1012)
++.+.||...|++++.+| +++++|+++... .|++|+..+...+..+.+|+-.|+.++|||||++|+++|.|.+
T Consensus 517 Ev~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt 595 (764)
T KOG1063|consen 517 EVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRT 595 (764)
T ss_pred hhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCce
Confidence 123347888899999999 999999998654 6999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCccccEEEecCCCCCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCc--eEEEeec----CCCeeEEEec
Q 001790 939 LCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKM--ERIRQVG----SPHICSIIFC 1011 (1012)
Q Consensus 939 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~-~d~~i~vwd~~~~--~~~~~~~----~~~i~~~~f~ 1011 (1012)
+.+|........ .+.+.....|. .-|++..|+||+++++++ .|.+|.||..... +.+..+. +..|..++|.
T Consensus 596 ~sl~~~~~~~~~-e~~fa~~k~Ht-RIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~ 673 (764)
T KOG1063|consen 596 VSLYEVQEDIKD-EFRFACLKAHT-RIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYL 673 (764)
T ss_pred EEeeeeecccch-hhhhccccccc-eEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEee
Confidence 999998654322 11233344554 788999999999999998 5999999999988 5554432 2668888876
Q ss_pred C
Q 001790 1012 N 1012 (1012)
Q Consensus 1012 p 1012 (1012)
|
T Consensus 674 ~ 674 (764)
T KOG1063|consen 674 P 674 (764)
T ss_pred c
Confidence 5
No 36
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.4e-34 Score=277.75 Aligned_cols=328 Identities=14% Similarity=0.195 Sum_probs=275.9
Q ss_pred ccCCCcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe
Q 001790 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1012)
Q Consensus 402 ~~~h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd 481 (1012)
|..|.++|.+++.+|+.+++|||+.|..-.+|++.+|+... .+.+|+..|+++.|+.||. +||||+.+|.|+||+
T Consensus 60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVFK 134 (399)
T ss_pred hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCce--EEEecCCCccEEEEE
Confidence 77799999999999999999999999999999999998555 6889999999999999999 999999999999999
Q ss_pred -CCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecC
Q 001790 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1012)
Q Consensus 482 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1012)
.+|.....+...-..+.-+.|||.. .+|+.|+.||.+-+|.+........+.+|+.++++=.|.|+|++++++.
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a--~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy--- 209 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRA--HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGY--- 209 (399)
T ss_pred cccCceEEEeecccCceEEEEecccc--cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEe---
Confidence 8888888887667778899999954 7999999999999999999888889999999999999999999999998
Q ss_pred CCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecC------CC---CCC
Q 001790 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE------GG---LPN 631 (1012)
Q Consensus 561 ~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~---~~~ 631 (1012)
.|++|++||..+++++..+.........++.++..+..++.|+.++.+++-+..+++.+...... .+ ...
T Consensus 210 -~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~es 288 (399)
T KOG0296|consen 210 -DDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDES 288 (399)
T ss_pred -cCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhh
Confidence 49999999999999999988776667888999999999999999999999999888887766521 01 112
Q ss_pred cceeEeecCCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeeccccccccccCCCCCccccccCCCCC
Q 001790 632 LPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRP 711 (1012)
Q Consensus 632 v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 711 (1012)
|..+.++..-.+.|+|+-||+|.|||+...
T Consensus 289 ve~~~~ss~lpL~A~G~vdG~i~iyD~a~~-------------------------------------------------- 318 (399)
T KOG0296|consen 289 VESIPSSSKLPLAACGSVDGTIAIYDLAAS-------------------------------------------------- 318 (399)
T ss_pred hhhcccccccchhhcccccceEEEEecccc--------------------------------------------------
Confidence 233333334455566666666666665331
Q ss_pred CccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeeccCeeEee
Q 001790 712 SPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLW 791 (1012)
Q Consensus 712 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w 791 (1012)
T Consensus 319 -------------------------------------------------------------------------------- 318 (399)
T KOG0296|consen 319 -------------------------------------------------------------------------------- 318 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEEEc-CCcEEEEEcCCCeEEEEEcC
Q 001790 792 KWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS 870 (1012)
Q Consensus 792 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~ 870 (1012)
.+. ..+ .|...|..+.|-+ ..+|++++ +|.|+.||.++|.++.++.|
T Consensus 319 -----~~R-----------------------~~c---~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~G 366 (399)
T KOG0296|consen 319 -----TLR-----------------------HIC---EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTG 366 (399)
T ss_pred -----hhh-----------------------eec---cCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEec
Confidence 000 000 1677788888888 56676666 99999999999999999999
Q ss_pred CCCCeeEEEEecCCCcEEEEEeCCCeEEEEEcc
Q 001790 871 PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR 903 (1012)
Q Consensus 871 ~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~ 903 (1012)
|...|.+++++| +++++++++.|++.+||++.
T Consensus 367 H~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 367 HQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 999999999999 99999999999999999864
No 37
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.4e-33 Score=296.79 Aligned_cols=455 Identities=17% Similarity=0.302 Sum_probs=325.1
Q ss_pred ccCCCcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe
Q 001790 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1012)
Q Consensus 402 ~~~h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd 481 (1012)
+...+..|..++|+|...+++++-..|.|++||..-+..+. .+..|.++|+.++|+|++. +|+|||+|-.|+||+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 44467789999999999999999999999999999988776 6889999999999999999 999999999999999
Q ss_pred -CCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecC
Q 001790 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1012)
Q Consensus 482 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1012)
.+.+++.++.||-+.|..+.||+.- .+++++|.|.+|++|++.+.+++..+.+|.+.|.|..|+|....+++++-
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL-- 155 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL-- 155 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc--
Confidence 8999999999999999999998854 69999999999999999999999999999999999999999999999995
Q ss_pred CCCCcEEEEeCCCCe-----------------------------eeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEE
Q 001790 561 DGDSFLVEWNESEGT-----------------------------IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF 611 (1012)
Q Consensus 561 ~~~~~i~lwd~~~~~-----------------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 611 (1012)
|.+|++||+..-+ ....+.||.. .|+.++|+|.-..+++|+.|..|++
T Consensus 156 --DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDR-GVNwaAfhpTlpliVSG~DDRqVKl 232 (1202)
T KOG0292|consen 156 --DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDR-GVNWAAFHPTLPLIVSGADDRQVKL 232 (1202)
T ss_pred --cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccc-ccceEEecCCcceEEecCCcceeeE
Confidence 9999999985210 1234556766 7999999999999999999999999
Q ss_pred EeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeecccccc
Q 001790 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASS 691 (1012)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~ 691 (1012)
|.+...+....-...+|...|.++-|+|...++++.+.|+.|++||+.... ....++.
T Consensus 233 WrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt-~v~tfrr--------------------- 290 (1202)
T KOG0292|consen 233 WRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT-SVQTFRR--------------------- 290 (1202)
T ss_pred EEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccccc-ceeeeec---------------------
Confidence 999888777766777888899999999999999999999999999987652 1111110
Q ss_pred ccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEE
Q 001790 692 AVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLL 771 (1012)
Q Consensus 692 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 771 (1012)
..++-+.++
T Consensus 291 -----------------------------------------------------------------------endRFW~la 299 (1202)
T KOG0292|consen 291 -----------------------------------------------------------------------ENDRFWILA 299 (1202)
T ss_pred -----------------------------------------------------------------------cCCeEEEEE
Confidence 334567778
Q ss_pred EecCcceEEEeeccCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEEEcC
Q 001790 772 YTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG 851 (1012)
Q Consensus 772 ~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~sd 851 (1012)
.+|..+.++ ++.|+-+.+|.++. ..+..++ ++..|...-|
T Consensus 300 ahP~lNLfA-AgHDsGm~VFkleR-----------------------------------Erpa~~v----~~n~LfYvkd 339 (1202)
T KOG0292|consen 300 AHPELNLFA-AGHDSGMIVFKLER-----------------------------------ERPAYAV----NGNGLFYVKD 339 (1202)
T ss_pred ecCCcceee-eecCCceEEEEEcc-----------------------------------cCceEEE----cCCEEEEEcc
Confidence 888888554 45555555665421 2222222 3445555558
Q ss_pred CcEEEEEcCCCeEE--EEEcCC---CCCeeEEEEecCCCcEEEEEeCC-CeEEEEEccCCeEe----EEecccCCCeEEE
Q 001790 852 GKISLFNMMTFKVM--TTFMSP---PPASTFLAFHPQDNNIIAIGTED-STIHIYNVRVDEVK----SKLKGHQKRITGL 921 (1012)
Q Consensus 852 g~i~lwd~~~~~~~--~~~~~~---~~~i~~l~~sp~d~~~las~~~d-g~v~iwd~~~~~~~----~~~~~h~~~V~~l 921 (1012)
..|+-+|+.+.+-. ..++.. ..++.+|.++|..+-.|++...| |.-.++.+.+...- .... ......+
T Consensus 340 ~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~-k~tG~~a- 417 (1202)
T KOG0292|consen 340 RFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVK-KGTGEGA- 417 (1202)
T ss_pred ceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhh-cCCCCce-
Confidence 88999999875433 333332 35788899999544444443333 44445544332100 0000 0011111
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCCccccEEEecCCCCCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEeec
Q 001790 922 AFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQVG 1001 (1012)
Q Consensus 922 ~~spdg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~d~~i~vwd~~~~~~~~~~~ 1001 (1012)
.|-..+++.+---.+..+.+=++.+... + .+..+ ..+..+-+.-+|.+|+. +...|.+||+..++.+.++.
T Consensus 418 ~fvarNrfavl~k~~~~v~ik~l~N~vt-k--kl~~~-----~~~~~IF~ag~g~lll~-~~~~v~lfdvQq~~~~~si~ 488 (1202)
T KOG0292|consen 418 LFVARNRFAVLDKSNEQVVIKNLKNKVT-K--KLLLP-----ESTDDIFYAGTGNLLLR-SPDSVTLFDVQQKKKVGSIK 488 (1202)
T ss_pred EEEEecceEEEEecCcceEEecccchhh-h--cccCc-----ccccceeeccCccEEEE-cCCeEEEEEeecceEEEEEe
Confidence 2222222322222244455555544221 1 11111 12334555555655544 34567777777777777777
Q ss_pred CCCeeEEEecC
Q 001790 1002 SPHICSIIFCN 1012 (1012)
Q Consensus 1002 ~~~i~~~~f~p 1012 (1012)
.+.+..+.||+
T Consensus 489 ~s~vkyvvws~ 499 (1202)
T KOG0292|consen 489 VSKVKYVVWSN 499 (1202)
T ss_pred cCceeEEEEcC
Confidence 77777777664
No 38
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.8e-33 Score=261.81 Aligned_cols=286 Identities=19% Similarity=0.314 Sum_probs=233.6
Q ss_pred cCCCceEEEEEecC-CCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCE
Q 001790 342 HQGSTVISMDFHPS-HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1012)
Q Consensus 342 ~h~~~V~~~~~spd-g~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 420 (1012)
+|++.|+.++|+|- |. +||+|+.|..|+||+...+....- ...+-.+|...|.+++|+|.|++
T Consensus 12 gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAwsp~g~~ 75 (312)
T KOG0645|consen 12 GHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAWSPHGRY 75 (312)
T ss_pred CCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeeecCCCcE
Confidence 49999999999999 88 899999999999999875322111 11123479999999999999999
Q ss_pred EEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCC---cceeeecCCccC
Q 001790 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG---RKLFNFEGHEAP 496 (1012)
Q Consensus 421 las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~---~~~~~~~~h~~~ 496 (1012)
||+|+.|.++.||.-..++ .....++.||...|.+++|+++|. +||+|+.|++|-||. ..+ .++..++.|...
T Consensus 76 La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD 152 (312)
T KOG0645|consen 76 LASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD 152 (312)
T ss_pred EEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeeecccccc
Confidence 9999999999999877553 444568999999999999999999 999999999999999 433 456788999999
Q ss_pred EEEEeccccCCceEEEEEecCCeEEEEEcCC---CCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCC
Q 001790 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDT---MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1012)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~ 573 (1012)
|..+.|||.. .+|++++.|++|++|+-.. -.+..++.++...|.+++|++.|..|++++ .|++++||-..
T Consensus 153 VK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~s----dD~tv~Iw~~~- 225 (312)
T KOG0645|consen 153 VKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCS----DDGTVSIWRLY- 225 (312)
T ss_pred ccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEec----CCcceEeeeec-
Confidence 9999999976 5999999999999997663 234678888988999999999999999998 69999999754
Q ss_pred CeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEE-----ecCCCCCCcceeEeecC-CCEEEEE
Q 001790 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST-----DAEGGLPNLPRLRFSKE-GNLLAVT 647 (1012)
Q Consensus 574 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~~v~~v~~s~~-g~~l~~~ 647 (1012)
..+.+.+...+..+.|. ...|++++.|+.|++|.-...-.-..+ ....|...|++++|+|. .++|++|
T Consensus 226 ----~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~ 299 (312)
T KOG0645|consen 226 ----TDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASG 299 (312)
T ss_pred ----cCcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeec
Confidence 33444444578888888 568999999999999976542111111 12234458999999994 7899999
Q ss_pred ECCCcEEEEEcc
Q 001790 648 TADNGFKILANA 659 (1012)
Q Consensus 648 ~~dg~i~iwd~~ 659 (1012)
++||.+++|.+.
T Consensus 300 ~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 300 GDDGIVNFWELE 311 (312)
T ss_pred CCCceEEEEEec
Confidence 999999999864
No 39
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=9e-34 Score=267.74 Aligned_cols=290 Identities=17% Similarity=0.237 Sum_probs=247.6
Q ss_pred ccceEeecCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEE
Q 001790 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1012)
Q Consensus 335 ~~~~~~~~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 414 (1012)
...+...+|+++|+.+.|+|+|. ++|+|+.|..|.+|++.....- .-++++|.+.|..+.|
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN------------------~~~lkgHsgAVM~l~~ 98 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCEN------------------FWVLKGHSGAVMELHG 98 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccc------------------eeeeccccceeEeeee
Confidence 34455567999999999999999 7999999999999997533211 1237899999999999
Q ss_pred ccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCC
Q 001790 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (1012)
Q Consensus 415 spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h 493 (1012)
.+|+..|++++.|.+|+.||+++|++.+ .+++|...|+++.-+.-|.. ++.|++.|+++++|| .+...++++. .
T Consensus 99 ~~d~s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~ 173 (338)
T KOG0265|consen 99 MRDGSHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-N 173 (338)
T ss_pred ccCCCEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-c
Confidence 9999999999999999999999999888 57899999999996656665 788999999999999 7777777665 3
Q ss_pred ccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCC
Q 001790 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1012)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~ 573 (1012)
.-.++++.|.. .+..+++|+-|+.|++||++.......+.+|.+.|+.+..+++|.++.+.+. |.++++||++.
T Consensus 174 kyqltAv~f~d--~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp 247 (338)
T KOG0265|consen 174 KYQLTAVGFKD--TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRP 247 (338)
T ss_pred ceeEEEEEecc--cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEecc
Confidence 45688888854 5568999999999999999999999999999999999999999999999985 99999999875
Q ss_pred ----CeeeeeecCCCC---CcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEE
Q 001790 574 ----GTIKRTYAGFRK---KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAV 646 (1012)
Q Consensus 574 ----~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~ 646 (1012)
.+++..+.++.- .....++|+|++..+-+|+.|..+++||......+..++ ++...|++++|+|....+.+
T Consensus 248 ~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklp--Gh~gsvn~~~Fhp~e~iils 325 (338)
T KOG0265|consen 248 FAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLP--GHYGSVNEVDFHPTEPIILS 325 (338)
T ss_pred cCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcC--CcceeEEEeeecCCCcEEEE
Confidence 345777776542 124458999999999999999999999998888887776 45558999999999999999
Q ss_pred EECCCcEEEE
Q 001790 647 TTADNGFKIL 656 (1012)
Q Consensus 647 ~~~dg~i~iw 656 (1012)
++.|.+|.+=
T Consensus 326 ~~sdk~i~lg 335 (338)
T KOG0265|consen 326 CSSDKTIYLG 335 (338)
T ss_pred eccCceeEee
Confidence 9999998763
No 40
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=1.2e-31 Score=270.03 Aligned_cols=492 Identities=15% Similarity=0.188 Sum_probs=356.4
Q ss_pred ccceEeecCCCceEEEEEecCCCcEEEEecCCC--------eEEEEEccCCceecccccccccccccCccccceeccCCC
Q 001790 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNG--------EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1012)
Q Consensus 335 ~~~~~~~~h~~~V~~~~~spdg~~llasg~~dg--------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1012)
..+...++|+..|.|++.+||.- .+++|-..| .|+|||..+-..+. ++..-.
T Consensus 95 ~~Qr~y~GH~ddikc~~vHPdri-~vatGQ~ag~~g~~~~phvriWdsv~L~TL~-------------------V~g~f~ 154 (626)
T KOG2106|consen 95 RSQRHYLGHNDDIKCMAVHPDRI-RVATGQGAGTSGRPLQPHVRIWDSVTLSTLH-------------------VIGFFD 154 (626)
T ss_pred hhcccccCCCCceEEEeecCCce-eeccCcccccCCCcCCCeeeecccccceeee-------------------eecccc
Confidence 34566778999999999999986 577775555 58999966544432 244456
Q ss_pred cceEEEEEcc--CCCEEEEE--ECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-
Q 001790 407 ISVSRVAWSP--DGNYVGVA--FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE- 481 (1012)
Q Consensus 407 ~~V~~v~~sp--dg~~las~--~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd- 481 (1012)
..|.|++||+ .|.+|+.- +.+..+.|||.+.+..... .......|..+.|.|.+.+ ++++++ .+.+.+|+
T Consensus 155 ~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~---vk~sne~v~~a~FHPtd~n-liit~G-k~H~~Fw~~ 229 (626)
T KOG2106|consen 155 RGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGP---VKTSNEVVFLATFHPTDPN-LIITCG-KGHLYFWTL 229 (626)
T ss_pred ccceeeeecccCCCceEEEecCCCccccchhhchhhhccCc---ceeccceEEEEEeccCCCc-EEEEeC-CceEEEEEc
Confidence 7899999999 45555554 3455689999998776653 4446677899999999987 677777 68999999
Q ss_pred CCCccee---eecCCc-cCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEee
Q 001790 482 LSGRKLF---NFEGHE-APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1012)
Q Consensus 482 ~~~~~~~---~~~~h~-~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 557 (1012)
..+...+ .|.++. ..|.|++|.+++| +++|..+|.|.+|+..+.........|.+.|.+++...+|..|- |+
T Consensus 230 ~~~~l~k~~~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-Gg 305 (626)
T KOG2106|consen 230 RGGSLVKRQGIFEKREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GG 305 (626)
T ss_pred cCCceEEEeeccccccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cC
Confidence 5554433 334333 5689999977543 78999999999999877666555558999999999999997665 66
Q ss_pred ecCCCCCcEEEEeCCCCeeeeeecCC-CCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeE
Q 001790 558 TSKDGDSFLVEWNESEGTIKRTYAGF-RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1012)
Q Consensus 558 ~~~~~~~~i~lwd~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (1012)
.|..|..||- .-+.++..+-. ..+.+..++- .+.-|++|...+.|..=.++++-.+..+ +|......++
T Consensus 306 ----KDRki~~Wd~-~y~k~r~~elPe~~G~iRtv~e--~~~di~vGTtrN~iL~Gt~~~~f~~~v~---gh~delwgla 375 (626)
T KOG2106|consen 306 ----KDRKIILWDD-NYRKLRETELPEQFGPIRTVAE--GKGDILVGTTRNFILQGTLENGFTLTVQ---GHGDELWGLA 375 (626)
T ss_pred ----ccceEEeccc-cccccccccCchhcCCeeEEec--CCCcEEEeeccceEEEeeecCCceEEEE---ecccceeeEE
Confidence 6999999993 33333332222 2235555543 3333888888878777777766554444 2333689999
Q ss_pred eecCCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeeccccccccccCCCCCccccccCCCCCCcccc
Q 001790 637 FSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIIN 716 (1012)
Q Consensus 637 ~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1012)
.+|+...+++++.|+.+++|+ ... ..
T Consensus 376 ~hps~~q~~T~gqdk~v~lW~-~~k--~~--------------------------------------------------- 401 (626)
T KOG2106|consen 376 THPSKNQLLTCGQDKHVRLWN-DHK--LE--------------------------------------------------- 401 (626)
T ss_pred cCCChhheeeccCcceEEEcc-CCc--ee---------------------------------------------------
Confidence 999999999999999999998 211 10
Q ss_pred CCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeeccCeeEeeecccc
Q 001790 717 GVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRN 796 (1012)
Q Consensus 717 ~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~ 796 (1012)
|... -..++.++.|+|.| .++.|...|...+.|.++.
T Consensus 402 ------------------------wt~~------------------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~ 438 (626)
T KOG2106|consen 402 ------------------------WTKI------------------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQ 438 (626)
T ss_pred ------------------------EEEE------------------ecCceeEeeccCcc-eEEEeeccceEEEEecccc
Confidence 1110 23466788899999 7888888998888875442
Q ss_pred ccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEEEc-CCcEEEEEcCCCeE-EEEE-cCCCC
Q 001790 797 EQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKV-MTTF-MSPPP 873 (1012)
Q Consensus 797 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~lwd~~~~~~-~~~~-~~~~~ 873 (1012)
. .+. +.. ...+++++.|+|||.+||+|+ |+.|++|.+..... .... ..+..
T Consensus 439 ~----------------------lv~--~~~--d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs 492 (626)
T KOG2106|consen 439 D----------------------LVT--IHT--DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGS 492 (626)
T ss_pred e----------------------eEE--EEe--cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCc
Confidence 1 111 111 477899999999999999999 99999998875432 2222 23447
Q ss_pred CeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeEE--------------e----cccCCCeEEEEEcCCCCEEEEEeC
Q 001790 874 ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK--------------L----KGHQKRITGLAFSTSLNILVSSGA 935 (1012)
Q Consensus 874 ~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~--------------~----~~h~~~V~~l~~spdg~~l~s~s~ 935 (1012)
+|+.+.||+ |+++|.+.+-|-.|..|....-+.+.. | ..|...|..++-+.+.+++|+|.+
T Consensus 493 ~ithLDwS~-Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd 571 (626)
T KOG2106|consen 493 PITHLDWSS-DSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDD 571 (626)
T ss_pred eeEEeeecC-CCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhcccc
Confidence 899999999 999999999999999994332211111 1 135566777888888999999999
Q ss_pred CCcEEEEeCCCCCccccEEEecCCCCCCCCceEEEEcCCCCEEEEE-eCCeEEEEECC
Q 001790 936 DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDAS 992 (1012)
Q Consensus 936 Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~-~d~~i~vwd~~ 992 (1012)
.|.|+++...-.+... ..+...+|. +.|++++|+-+...+++. .|.+|..|++.
T Consensus 572 ~g~v~lf~yPc~s~rA--~~he~~ghs-~~vt~V~Fl~~d~~li~tg~D~Si~qW~lv 626 (626)
T KOG2106|consen 572 FGKVHLFSYPCSSPRA--PSHEYGGHS-SHVTNVAFLCKDSHLISTGKDTSIMQWRLV 626 (626)
T ss_pred CceEEEEccccCCCcc--cceeecccc-ceeEEEEEeeCCceEEecCCCceEEEEEeC
Confidence 9999999876544322 345556665 889999999988888875 79999999863
No 41
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=4.5e-34 Score=275.30 Aligned_cols=246 Identities=17% Similarity=0.287 Sum_probs=227.4
Q ss_pred eeccCCCcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEE
Q 001790 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1012)
Q Consensus 400 ~~~~~h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~v 479 (1012)
+++.+|-+.|.|+++.|-..++++|+.|++|+|||+.+|+... ++.||...|..+++|+-.. |+++++.|+.|+.
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKC 219 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKC 219 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEE
Confidence 5789999999999999999999999999999999999997555 7889999999999999888 8999999999999
Q ss_pred Ee-CCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeee
Q 001790 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1012)
Q Consensus 480 wd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 558 (1012)
|| ...+.++.+.||-..|.+++.+|.- +.|++|+.|.++++||+++...+..+.+|..+|.++.+.|-...+++|+
T Consensus 220 wDLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S- 296 (460)
T KOG0285|consen 220 WDLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGS- 296 (460)
T ss_pred EechhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEec-
Confidence 99 8899999999999999999999865 5899999999999999999999999999999999999999888999998
Q ss_pred cCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEee
Q 001790 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1012)
Q Consensus 559 ~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1012)
.|++|++||++.|+...++..|.. .+.+++.+|....+++++.| .|+.|++..+..+..+..+ ..-+++++.+
T Consensus 297 ---~D~tvrlWDl~agkt~~tlt~hkk-svral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh--~~iintl~~n 369 (460)
T KOG0285|consen 297 ---HDSTVRLWDLRAGKTMITLTHHKK-SVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGH--NAIINTLSVN 369 (460)
T ss_pred ---CCceEEEeeeccCceeEeeecccc-eeeEEecCCchhhhhccCCc-cceeccCCccchhhccccc--cceeeeeeec
Confidence 499999999999999999998876 89999999999999999887 7999999999998886644 4478999988
Q ss_pred cCCCEEEEEECCCcEEEEEccCC
Q 001790 639 KEGNLLAVTTADNGFKILANAIG 661 (1012)
Q Consensus 639 ~~g~~l~~~~~dg~i~iwd~~~~ 661 (1012)
.|| .+++|+++|.+.+||..++
T Consensus 370 sD~-v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 370 SDG-VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred cCc-eEEEcCCceEEEEEecCcC
Confidence 886 6789999999999999887
No 42
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=6.9e-34 Score=274.02 Aligned_cols=285 Identities=18% Similarity=0.289 Sum_probs=256.1
Q ss_pred cCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE
Q 001790 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1012)
Q Consensus 342 ~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 421 (1012)
+|.+.|.|+++.|-+. ++++|+.|++++|||+.+|+...+ +.||-..|..+++|+--.||
T Consensus 149 gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~~vr~vavS~rHpYl 208 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLT-------------------LTGHIETVRGVAVSKRHPYL 208 (460)
T ss_pred hccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEe-------------------ecchhheeeeeeecccCceE
Confidence 4999999999999988 799999999999999999998754 88999999999999999999
Q ss_pred EEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCCccCEEEE
Q 001790 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1012)
Q Consensus 422 as~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~v~~~ 500 (1012)
.+++.|+.|+.||++..+.++ .+.||-..|.|++..|.-+ .|++|+.|.+++||| .+...+..+.||..+|..+
T Consensus 209 Fs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V 283 (460)
T KOG0285|consen 209 FSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASV 283 (460)
T ss_pred EEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEecCCCCcceeE
Confidence 999999999999999998888 5779999999999999988 899999999999999 8888999999999999999
Q ss_pred eccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeee
Q 001790 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1012)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~ 580 (1012)
.+.+.. ..+++|+.|++|++||+..++....+..|...+.+++.+|....+++++ ...|+-|++..|..+..+
T Consensus 284 ~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas-----~dnik~w~~p~g~f~~nl 356 (460)
T KOG0285|consen 284 MCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS-----PDNIKQWKLPEGEFLQNL 356 (460)
T ss_pred EeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC-----CccceeccCCccchhhcc
Confidence 987653 4799999999999999999999999999999999999999999999987 456899999999999999
Q ss_pred cCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEe---cCC---CCCCcceeEeecCCCEEEEEECCCcEE
Q 001790 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD---AEG---GLPNLPRLRFSKEGNLLAVTTADNGFK 654 (1012)
Q Consensus 581 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~---~~~~v~~v~~s~~g~~l~~~~~dg~i~ 654 (1012)
.+|.. .+++++...| .++++|+++|.+.+||.+++...+... .++ ....|.+.+|...|..|++|..|.+|+
T Consensus 357 sgh~~-iintl~~nsD-~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk 434 (460)
T KOG0285|consen 357 SGHNA-IINTLSVNSD-GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIK 434 (460)
T ss_pred ccccc-eeeeeeeccC-ceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceE
Confidence 99887 7888888776 488999999999999999886655442 222 223578999999999999999999999
Q ss_pred EEEccC
Q 001790 655 ILANAI 660 (1012)
Q Consensus 655 iwd~~~ 660 (1012)
+|.-..
T Consensus 435 ~~keDe 440 (460)
T KOG0285|consen 435 MYKEDE 440 (460)
T ss_pred EEeccc
Confidence 997543
No 43
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.5e-34 Score=276.03 Aligned_cols=300 Identities=17% Similarity=0.309 Sum_probs=267.0
Q ss_pred eeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEE
Q 001790 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524 (1012)
Q Consensus 446 ~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd 524 (1012)
.+.+|..+|+.+-|.|+-. .++++++|++|++|| .+|+....++||.+.+..++|+. .|.++++++.|-.+++||
T Consensus 103 ~l~g~r~~vt~v~~hp~~~--~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a--~Gk~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 103 KLAGHRSSVTRVIFHPSEA--LVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDA--SGKYLATCSSDLSAKLWD 178 (406)
T ss_pred hhhccccceeeeeeccCce--EEEEecCCceEEEEEccchhhhhhhhccccceeEEEEec--CccEEEecCCccchhhee
Confidence 4678999999999999988 899999999999999 99999999999999999999865 568999999999999999
Q ss_pred cCC-CCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEE
Q 001790 525 YDT-MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV 603 (1012)
Q Consensus 525 ~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 603 (1012)
.+. .+++....+|...|.+++|-|.|.++++++ .|.+|+.|++.+|-++.+|.+|.. -+..++.+.||..++++
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~s----rD~tik~We~~tg~cv~t~~~h~e-wvr~v~v~~DGti~As~ 253 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCS----RDNTIKAWECDTGYCVKTFPGHSE-WVRMVRVNQDGTIIASC 253 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecCCeeeecc----cccceeEEecccceeEEeccCchH-hEEEEEecCCeeEEEec
Confidence 987 556667888999999999999999999999 599999999999999999999988 89999999999999999
Q ss_pred eCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCcccee
Q 001790 604 GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESV 683 (1012)
Q Consensus 604 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v 683 (1012)
+.|.++++|-+.++++...+..+.+ +|.+++|.|...+ . + | .
T Consensus 254 s~dqtl~vW~~~t~~~k~~lR~hEh--~vEci~wap~~~~--~---~--i--~--------------------------- 295 (406)
T KOG0295|consen 254 SNDQTLRVWVVATKQCKAELREHEH--PVECIAWAPESSY--P---S--I--S--------------------------- 295 (406)
T ss_pred CCCceEEEEEeccchhhhhhhcccc--ceEEEEecccccC--c---c--h--h---------------------------
Confidence 9999999999999988877776666 7888888775320 0 0 0 0
Q ss_pred eeccccccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCC
Q 001790 684 ALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDT 763 (1012)
Q Consensus 684 ~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 763 (1012)
T Consensus 296 -------------------------------------------------------------------------------- 295 (406)
T KOG0295|consen 296 -------------------------------------------------------------------------------- 295 (406)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceEEEEEecCcceEEEeeccCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCC
Q 001790 764 SSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKND 843 (1012)
Q Consensus 764 ~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 843 (1012)
-+++ ..+ .+
T Consensus 296 ---------------~at~-----------------------------------------------~~~---------~~ 304 (406)
T KOG0295|consen 296 ---------------EATG-----------------------------------------------STN---------GG 304 (406)
T ss_pred ---------------hccC-----------------------------------------------CCC---------Cc
Confidence 0000 000 35
Q ss_pred CEEEEEc-CCcEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeEEecccCCCeEEEE
Q 001790 844 SYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLA 922 (1012)
Q Consensus 844 ~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~ 922 (1012)
+++++++ |++|++||+.++.++.++.+|.+.|..++|+| +|+||+++.+|+++++||++++++.+++..|..-|+++.
T Consensus 305 ~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lD 383 (406)
T KOG0295|consen 305 QVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSP-GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLD 383 (406)
T ss_pred cEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcC-CCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEe
Confidence 6788888 99999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeC
Q 001790 923 FSTSLNILVSSGADAQLCVWSI 944 (1012)
Q Consensus 923 ~spdg~~l~s~s~Dg~i~vwd~ 944 (1012)
|..+..+++||+-|.++++|.-
T Consensus 384 fh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 384 FHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cCCCCceEEeccccceeeeeec
Confidence 9999999999999999999964
No 44
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.9e-30 Score=270.32 Aligned_cols=545 Identities=14% Similarity=0.145 Sum_probs=377.0
Q ss_pred CCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCC-CcceEEEEEccCCCEE
Q 001790 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV-PISVSRVAWSPDGNYV 421 (1012)
Q Consensus 343 h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~~spdg~~l 421 (1012)
.+.+|.|+|||.+.+. ||.|-.+|.|.||++..+-.. ..++.|+ ...|.+++|+ +|..|
T Consensus 24 ~Ps~I~slA~s~kS~~-lAvsRt~g~IEiwN~~~~w~~------------------~~vi~g~~drsIE~L~W~-e~~RL 83 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQ-LAVSRTDGNIEIWNLSNNWFL------------------EPVIHGPEDRSIESLAWA-EGGRL 83 (691)
T ss_pred eccceEEEEEeccCCc-eeeeccCCcEEEEccCCCcee------------------eEEEecCCCCceeeEEEc-cCCeE
Confidence 5679999999999984 888889999999999875332 2335555 6789999999 55667
Q ss_pred EEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcce--eeecCCccCEE
Q 001790 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL--FNFEGHEAPVY 498 (1012)
Q Consensus 422 as~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~--~~~~~h~~~v~ 498 (1012)
.+.+.+|.|.-||+.+++... .+....+.|++++.+|.+. .++.|++||.+..++ ..++.. ..|....++|.
T Consensus 84 FS~g~sg~i~EwDl~~lk~~~---~~d~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvL 158 (691)
T KOG2048|consen 84 FSSGLSGSITEWDLHTLKQKY---NIDSNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVL 158 (691)
T ss_pred EeecCCceEEEEecccCceeE---EecCCCcceeEEEeCCccc--eEEeecCCceEEEEecCCceEEEEeecccccceEE
Confidence 788899999999999988666 5777889999999999998 789999999777777 444433 33445668999
Q ss_pred EEeccccCCceEEEEEecCCeEEEEEcCCCCceeee-----cC---CCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEe
Q 001790 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-----DA---PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (1012)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-----~~---~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd 570 (1012)
+++|++ ++..+++|+.||.|++||...+...... .. ...-|.++.|-.++ .|++|- ..|.|.+||
T Consensus 159 slsw~~--~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgD----S~G~V~FWd 231 (691)
T KOG2048|consen 159 SLSWNP--TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGD----SAGTVTFWD 231 (691)
T ss_pred EEEecC--CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEec----CCceEEEEc
Confidence 999976 5578999999999999999987766521 11 23357788887666 466654 489999999
Q ss_pred CCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCee--EEEEecCCCCCCcceeEeecCCCEEEEEE
Q 001790 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI--LTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1012)
Q Consensus 571 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~s~~g~~l~~~~ 648 (1012)
...+.+++.+..|.. .|.+++..+++++++++|.|+.|..|...+... +.......|...|.+++..++ .+++|+
T Consensus 232 ~~~gTLiqS~~~h~a-dVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG 308 (691)
T KOG2048|consen 232 SIFGTLIQSHSCHDA-DVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGG 308 (691)
T ss_pred ccCcchhhhhhhhhc-ceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecc
Confidence 999999999999887 899999999999999999999999998876543 222223334447899999887 899999
Q ss_pred CCCcEEEEEccCCceeeecccCCccccccCccceeeeccccccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCC
Q 001790 649 ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKP 728 (1012)
Q Consensus 649 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1012)
.|.++.+-........ .+... ...|.+.. .......+
T Consensus 309 ~d~~l~i~~s~~~~~~-----~h~~~---------~~~p~~~~-----------------------------v~~a~~~~ 345 (691)
T KOG2048|consen 309 RDFTLAICSSREFKNM-----DHRQK---------NLFPASDR-----------------------------VSVAPENR 345 (691)
T ss_pred eeeEEEEccccccCch-----hhhcc---------ccccccce-----------------------------eecCccce
Confidence 9998887654331100 00000 00011110 11112222
Q ss_pred cccccccCCCCCcceeEEee-----cCceEEEecCCCCCCCCceEEEEEecCcceEEEeeccCeeEeeeccccccCCCCC
Q 001790 729 RTVDDVTDKPKPWQLAEIVD-----SGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGK 803 (1012)
Q Consensus 729 l~~~~~d~~i~~w~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~ 803 (1012)
+..-..+..+.+|.+..... ...+..+..+ ....|.+.+.+|+|++++.+.-. ..++|.+.... .
T Consensus 346 L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k----~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~-----~ 415 (691)
T KOG2048|consen 346 LLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTK----EKENISCAAISPDGNLIAISTVS-RTKIYRLQPDP-----N 415 (691)
T ss_pred EEEEeccccccceeccCcccccccChhhheeeecC----CccceeeeccCCCCCEEEEeecc-ceEEEEeccCc-----c
Confidence 33333345566666654321 1222333333 35679999999999987776543 67777664321 0
Q ss_pred ccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEEEc--CCcEEEEEcCCCeE--EEEEc--CCCCCeeE
Q 001790 804 ATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKV--MTTFM--SPPPASTF 877 (1012)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s--dg~i~lwd~~~~~~--~~~~~--~~~~~i~~ 877 (1012)
.. +-.+ ...+. ..-....+.|+-|+..++.++ ...+.++++.+... +..+. +-.+.|+.
T Consensus 416 vk------~~~v-------~~~~~--~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~ 480 (691)
T KOG2048|consen 416 VK------VINV-------DDVPL--ALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISR 480 (691)
T ss_pred ee------EEEe-------ccchh--hhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCccee
Confidence 00 0000 00111 234567788999988887776 57788888775533 22222 24567999
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEEccCCeEeEEecccCCCeEEEEEc-CCCCEEEEEeCCCcEEEEeCCCCCccccE---
Q 001790 878 LAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFS-TSLNILVSSGADAQLCVWSIDTWEKRKSV--- 953 (1012)
Q Consensus 878 l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s-pdg~~l~s~s~Dg~i~vwd~~~~~~~~~~--- 953 (1012)
++.|| +|++||+.+.+|.|.+|++++++.......-...|++++|+ ++...|+.+..|+.+.-+|+...+..+-.
T Consensus 481 l~~Ss-dG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~~n 559 (691)
T KOG2048|consen 481 LVVSS-DGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSKNN 559 (691)
T ss_pred EEEcC-CCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhhcc
Confidence 99999 99999999999999999999987655543445789999999 46678888999999999999543311111
Q ss_pred --EEecCCCCCCCCceEEEEcCCCCEEEEE-eCCeEEEEEC
Q 001790 954 --TIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDA 991 (1012)
Q Consensus 954 --~~~~~~~~~~~~v~~l~fs~d~~~l~~~-~d~~i~vwd~ 991 (1012)
.+..........+..+.|.|..+-.+.. +.+.+.+.|.
T Consensus 560 t~nlpk~~~~l~~~~~gisfd~~n~s~~~~~~a~w~~~id~ 600 (691)
T KOG2048|consen 560 TRNLPKEPKTLIPGIPGISFDPKNSSRFIVYDAHWSCLIDF 600 (691)
T ss_pred ccccccChhhcCCCCceEEeCCCCccEEEEEcCcEEEEEec
Confidence 1111111112678889998877665555 4556677664
No 45
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-33 Score=254.68 Aligned_cols=287 Identities=17% Similarity=0.234 Sum_probs=247.1
Q ss_pred CccceEeec-CCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEE
Q 001790 334 PRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1012)
Q Consensus 334 ~~~~~~~~~-h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 412 (1012)
|.....++. |.++|.++.|+-||+ |..+++.|.+|++|+...|.++++ +.+|...|..+
T Consensus 6 ptkr~~~l~~~qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVlD~ 65 (307)
T KOG0316|consen 6 PTKRLSILDCAQGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVLDA 65 (307)
T ss_pred cchhceeecccccceEEEEEccCCC-EEEEcCCCceEEeecccccceeee-------------------ecCCCceeeec
Confidence 444555555 899999999999999 577777899999999999998865 88999999999
Q ss_pred EEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe---CCCcceee
Q 001790 413 AWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE---LSGRKLFN 489 (1012)
Q Consensus 413 ~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd---~~~~~~~~ 489 (1012)
+.+.|...+++|+.|..|.+||+.+|+.++ .+.+|.+.|+.++|+.+.. .+++|+.|.++++|| .+-++++.
T Consensus 66 ~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQi 140 (307)
T KOG0316|consen 66 ALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQI 140 (307)
T ss_pred cccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccch
Confidence 999999999999999999999999999887 6889999999999999988 999999999999999 45678899
Q ss_pred ecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEE
Q 001790 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (1012)
Q Consensus 490 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lw 569 (1012)
+....+.|.++.+. +..|++|+.||+++.||++.+..... .-+++|++++|++|++..++++. ++++++.
T Consensus 141 ldea~D~V~Si~v~----~heIvaGS~DGtvRtydiR~G~l~sD--y~g~pit~vs~s~d~nc~La~~l----~stlrLl 210 (307)
T KOG0316|consen 141 LDEAKDGVSSIDVA----EHEIVAGSVDGTVRTYDIRKGTLSSD--YFGHPITSVSFSKDGNCSLASSL----DSTLRLL 210 (307)
T ss_pred hhhhcCceeEEEec----ccEEEeeccCCcEEEEEeecceeehh--hcCCcceeEEecCCCCEEEEeec----cceeeec
Confidence 98888999999873 35799999999999999987665443 34668999999999999998885 9999999
Q ss_pred eCCCCeeeeeecCCCCCcc-eEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEE
Q 001790 570 NESEGTIKRTYAGFRKKSN-GVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1012)
Q Consensus 570 d~~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~ 648 (1012)
|-.+|++++.+.+|..... ..++++....++++|++||.|++||+.....+..+..++. ..+.+++++|.-..++++.
T Consensus 211 Dk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~-v~v~dl~~hp~~~~f~~A~ 289 (307)
T KOG0316|consen 211 DKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVST-VIVTDLSCHPTMDDFITAT 289 (307)
T ss_pred ccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCc-eeEEeeecccCccceeEec
Confidence 9999999999999977332 3367777788999999999999999999999988887654 2478999999877777766
Q ss_pred CCCcEEEEE
Q 001790 649 ADNGFKILA 657 (1012)
Q Consensus 649 ~dg~i~iwd 657 (1012)
.. .+..|-
T Consensus 290 ~~-~~~~~~ 297 (307)
T KOG0316|consen 290 GH-GDLFWY 297 (307)
T ss_pred CC-ceecee
Confidence 43 455554
No 46
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=9.6e-31 Score=263.59 Aligned_cols=500 Identities=18% Similarity=0.264 Sum_probs=360.9
Q ss_pred EEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEECCC
Q 001790 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH 428 (1012)
Q Consensus 349 ~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~ 428 (1012)
.+-+-|.|..+..+ .+.+.+++++...+ +.+.||...|.|++.+||--.+++|-..|
T Consensus 70 Nly~lptgE~vyfv---A~V~Vl~n~ee~~Q--------------------r~y~GH~ddikc~~vHPdri~vatGQ~ag 126 (626)
T KOG2106|consen 70 NLYLLPTGELVYFV---AAVGVLYNWEERSQ--------------------RHYLGHNDDIKCMAVHPDRIRVATGQGAG 126 (626)
T ss_pred eeEEccCccEEEEe---ccEEEEEeehhhhc--------------------ccccCCCCceEEEeecCCceeeccCcccc
Confidence 35566777733333 34667777754222 23789999999999999999999875554
Q ss_pred --------eEEEEeecCCCcceeeeeeeccccCeEEEEEeCCC--CceEEEEEcCCCcEEEEe-CCCcceeeecCCccCE
Q 001790 429 --------LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPN--KLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV 497 (1012)
Q Consensus 429 --------~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~--~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~v 497 (1012)
.|+|||..+-..+. .+......|.+++|++-+ ..+..+--+.+..+.+|| ..+......+.....|
T Consensus 127 ~~g~~~~phvriWdsv~L~TL~---V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v 203 (626)
T KOG2106|consen 127 TSGRPLQPHVRIWDSVTLSTLH---VIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVV 203 (626)
T ss_pred cCCCcCCCeeeecccccceeee---eeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceE
Confidence 49999977654443 455667789999999853 333333445667889999 8888777777778889
Q ss_pred EEEeccccCCceEEEEEecCCeEEEEEcCCCCceee---ecC-CCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCC
Q 001790 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD---YDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1012)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~---~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~ 573 (1012)
....|+|... .+++++ ..|.+.+|+.+.+..... +.. ....|.+++|.++|..+ ++- .+|.|.+|+..+
T Consensus 204 ~~a~FHPtd~-nliit~-Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdvi-TgD----S~G~i~Iw~~~~ 276 (626)
T KOG2106|consen 204 FLATFHPTDP-NLIITC-GKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVI-TGD----SGGNILIWSKGT 276 (626)
T ss_pred EEEEeccCCC-cEEEEe-CCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEE-eec----CCceEEEEeCCC
Confidence 9999999754 455554 478999999887655443 222 22579999999999855 443 489999999988
Q ss_pred CeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcE
Q 001790 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (1012)
Q Consensus 574 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i 653 (1012)
.+..+....|.+ .|.+++.-.+|.. ++|+.|..|..|| ...+.++....+...++|..++=...+ +++|...+.|
T Consensus 277 ~~~~k~~~aH~g-gv~~L~~lr~Gtl-lSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~i 351 (626)
T KOG2106|consen 277 NRISKQVHAHDG-GVFSLCMLRDGTL-LSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTRNFI 351 (626)
T ss_pred ceEEeEeeecCC-ceEEEEEecCccE-eecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeeccceE
Confidence 888777776665 8999999888765 4599999999999 566666667666666677776643332 6777666555
Q ss_pred EEEEccCCceeeecccCCccccccCccceeeeccccccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCccccc
Q 001790 654 KILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDD 733 (1012)
Q Consensus 654 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 733 (1012)
..=.+.++...
T Consensus 352 L~Gt~~~~f~~--------------------------------------------------------------------- 362 (626)
T KOG2106|consen 352 LQGTLENGFTL--------------------------------------------------------------------- 362 (626)
T ss_pred EEeeecCCceE---------------------------------------------------------------------
Confidence 43332222100
Q ss_pred ccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeeccCeeEeeeccccccCCCCCccccccceee
Q 001790 734 VTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHW 813 (1012)
Q Consensus 734 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~ 813 (1012)
.. .+|......++.+|+...+++++.|+.+++|+-.. .+|
T Consensus 363 ----------------------~v---~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k---------------~~w 402 (626)
T KOG2106|consen 363 ----------------------TV---QGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHK---------------LEW 402 (626)
T ss_pred ----------------------EE---EecccceeeEEcCCChhheeeccCcceEEEccCCc---------------eeE
Confidence 00 12667788899999999999999999999997111 123
Q ss_pred ccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEEEc-CCcEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEEe
Q 001790 814 LPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT 892 (1012)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~ 892 (1012)
... ...+..|+.|+|.| .+|.|. .|...+.|.++...+..-.. ..++++++|+| +|.+||.|+
T Consensus 403 t~~-------------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp-~G~~lAvgs 466 (626)
T KOG2106|consen 403 TKI-------------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSP-DGAFLAVGS 466 (626)
T ss_pred EEE-------------ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcC-CCCEEEEec
Confidence 221 45778999999999 899998 89999999999666655554 78899999999 999999999
Q ss_pred CCCeEEEEEccCC-eEeEEe-cccCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCcccc------------EEEecC
Q 001790 893 EDSTIHIYNVRVD-EVKSKL-KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKS------------VTIHIP 958 (1012)
Q Consensus 893 ~dg~v~iwd~~~~-~~~~~~-~~h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~~~~~------------~~~~~~ 958 (1012)
.|+.|+||.+..+ ...... +-|..+|+.+.||+|+++|.+-+.|-.|-.|.....+.... +-+...
T Consensus 467 ~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~ 546 (626)
T KOG2106|consen 467 HDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVF 546 (626)
T ss_pred CCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEe
Confidence 9999999999754 333332 22348999999999999999999999999994433222111 112223
Q ss_pred CCCCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCceEEEee-----cCCCeeEEEec
Q 001790 959 AGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKMERIRQV-----GSPHICSIIFC 1011 (1012)
Q Consensus 959 ~~~~~~~v~~l~fs~d~~~l~~~-~d~~i~vwd~~~~~~~~~~-----~~~~i~~~~f~ 1011 (1012)
.+.....|..++-+.+.+.++++ ..|.|++|...=-.....+ .+++|.+++|.
T Consensus 547 g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl 605 (626)
T KOG2106|consen 547 GGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFL 605 (626)
T ss_pred cccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEe
Confidence 33333677888888999999999 4689999987643322222 22789999996
No 47
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.6e-34 Score=275.51 Aligned_cols=275 Identities=20% Similarity=0.287 Sum_probs=235.1
Q ss_pred CCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001790 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1012)
Q Consensus 343 h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 422 (1012)
....|+|+++. |+ .+++|..|++|+|||..+-.++. ++.||++.|.|+.| |.+.|+
T Consensus 196 ~skgVYClQYD-D~--kiVSGlrDnTikiWD~n~~~c~~-------------------~L~GHtGSVLCLqy--d~rvii 251 (499)
T KOG0281|consen 196 NSKGVYCLQYD-DE--KIVSGLRDNTIKIWDKNSLECLK-------------------ILTGHTGSVLCLQY--DERVIV 251 (499)
T ss_pred cCCceEEEEec-ch--hhhcccccCceEEeccccHHHHH-------------------hhhcCCCcEEeeec--cceEEE
Confidence 34589999996 33 48999999999999998776653 38999999999998 577999
Q ss_pred EEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCc---ceeeecCCccCEE
Q 001790 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR---KLFNFEGHEAPVY 498 (1012)
Q Consensus 423 s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~---~~~~~~~h~~~v~ 498 (1012)
+|+.|.+|+|||+++|+++. ++-+|...|..+.|+.. ++++++.|.++.+|| .... +.+.+.||...|+
T Consensus 252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 99999999999999999888 67799999999999843 799999999999999 4332 3366789999999
Q ss_pred EEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeee
Q 001790 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1012)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~ 578 (1012)
.+.| +.+++++++.|.+|++|++.+......+.+|...|.|+.+ .|+++++|++ |.+|++||+..|.+++
T Consensus 325 vVdf----d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 325 VVDF----DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR 394 (499)
T ss_pred eecc----ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHH
Confidence 9987 3369999999999999999999999999999999988876 6788888884 9999999999999999
Q ss_pred eecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEE-------EEecCCCCCCcceeEeecCCCEEEEEECCC
Q 001790 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT-------STDAEGGLPNLPRLRFSKEGNLLAVTTADN 651 (1012)
Q Consensus 579 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-------~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg 651 (1012)
.+.||.. -|.++.|. .+.+++|+.||+|++||+..+.... ......+.+.|..+.| |...+++++.|.
T Consensus 395 vLeGHEe-LvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHdd 469 (499)
T KOG0281|consen 395 VLEGHEE-LVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDD 469 (499)
T ss_pred HHhchHH-hhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCC
Confidence 9999988 89999985 5789999999999999998764331 1222244557888998 667899999999
Q ss_pred cEEEEEccCCce
Q 001790 652 GFKILANAIGLR 663 (1012)
Q Consensus 652 ~i~iwd~~~~~~ 663 (1012)
+|.|||..++..
T Consensus 470 tILiWdFl~~~~ 481 (499)
T KOG0281|consen 470 TILIWDFLNGPP 481 (499)
T ss_pred eEEEEEcCCCCc
Confidence 999999988743
No 48
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.2e-32 Score=307.47 Aligned_cols=284 Identities=22% Similarity=0.374 Sum_probs=249.4
Q ss_pred CCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCc--eecccccccccccccCccccceeccCCCcceEEEEEccCCCE
Q 001790 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRD--RLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1012)
Q Consensus 343 h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 420 (1012)
|...|.|+.|||+|+ ++++++.|+.+++|+..+++ .+ ..+.+|...|.+++|+|||++
T Consensus 158 ~~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~~~~~~-------------------~~l~~h~~~v~~~~fs~d~~~ 217 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGIKSNLL-------------------RELSGHTRGVSDVAFSPDGSY 217 (456)
T ss_pred ccCceEEEEEcCCCC-eEEEccCCCcEEEeecccccchhh-------------------ccccccccceeeeEECCCCcE
Confidence 478999999999999 59999999999999996665 22 225789999999999999999
Q ss_pred EEEEECCCeEEEEee-cCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCCccCEE
Q 001790 421 VGVAFTKHLIQLYSY-AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (1012)
Q Consensus 421 las~~~d~~v~vwd~-~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~v~ 498 (1012)
+++|+.|++|+|||+ ..+..++ ++.+|...|++++|+|+|+ .+++|+.|++|++|| .+++++..+.+|.+.|.
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 999999999999999 4445555 7889999999999999997 899999999999999 78999999999999999
Q ss_pred EEeccccCCceEEEEEecCCeEEEEEcCCCC--ceeeecCCCC--cEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCC
Q 001790 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1012)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~--~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~ 574 (1012)
+++|.+ ++.+|++++.||.|++||+.++. ....+..+.. +++++.|+|+++++++++ .++.+++||+..+
T Consensus 293 ~~~f~~--d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~----~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 293 GLAFSP--DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS----LDRTLKLWDLRSG 366 (456)
T ss_pred EEEECC--CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec----CCCeEEEEEccCC
Confidence 999966 66899999999999999999988 3444444443 599999999999999998 4889999999999
Q ss_pred eeeeeecCCCCC--cceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEE--CC
Q 001790 575 TIKRTYAGFRKK--SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT--AD 650 (1012)
Q Consensus 575 ~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~--~d 650 (1012)
.....+.+|... .+.....++.+.++++|+.|+.|++||..++..+..+..+. ...+..+.++|...++++++ .|
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~s~s~~~d 445 (456)
T KOG0266|consen 367 KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIASSSFEGD 445 (456)
T ss_pred cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeeeecCcCCC
Confidence 999999999874 34445567889999999999999999999998888888764 55789999999999999998 68
Q ss_pred CcEEEEEc
Q 001790 651 NGFKILAN 658 (1012)
Q Consensus 651 g~i~iwd~ 658 (1012)
+.+++|..
T Consensus 446 ~~~~~w~~ 453 (456)
T KOG0266|consen 446 GLIRLWKY 453 (456)
T ss_pred ceEEEecC
Confidence 89999965
No 49
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=9.5e-32 Score=254.11 Aligned_cols=249 Identities=18% Similarity=0.305 Sum_probs=216.0
Q ss_pred eccCCCcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEE
Q 001790 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1012)
Q Consensus 401 ~~~~h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vw 480 (1012)
.+.+|.+.|..+.|+|+|.+||+|+.|..|.+|++.... .....+++|.+.|..+.|.+|+. .+++++.|++|+.|
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRGW 117 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEEE
Confidence 478999999999999999999999999999999976533 23336889999999999999999 89999999999999
Q ss_pred e-CCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeec
Q 001790 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1012)
Q Consensus 481 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 559 (1012)
| .+|+.++.+++|..-|+++.... -+..++.+++.||++++||++.......+. ...+++++.|..++..+++++-
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~r-rg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggI- 194 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPSR-RGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGI- 194 (338)
T ss_pred ecccceeeehhccccceeeecCccc-cCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccc-
Confidence 9 99999999999999999998543 244688899999999999999866665543 3447899999999999999995
Q ss_pred CCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCC----eeEEEEecCCCCC--Ccc
Q 001790 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV----NILTSTDAEGGLP--NLP 633 (1012)
Q Consensus 560 ~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~--~v~ 633 (1012)
|+.|++||++.+....++.||.+ .|+.+..+++|.++.+-+.|.++++||++.. +++..+..+.+.- ...
T Consensus 195 ---dn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL 270 (338)
T KOG0265|consen 195 ---DNDIKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLL 270 (338)
T ss_pred ---cCceeeeccccCcceEEeecccC-ceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcc
Confidence 88999999999999999999998 8999999999999999999999999998753 4466666544432 345
Q ss_pred eeEeecCCCEEEEEECCCcEEEEEccC
Q 001790 634 RLRFSKEGNLLAVTTADNGFKILANAI 660 (1012)
Q Consensus 634 ~v~~s~~g~~l~~~~~dg~i~iwd~~~ 660 (1012)
.++|+|+++.+..|+.|..+++||...
T Consensus 271 ~cswsp~~~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 271 KCSWSPNGTKITAGSADRFVYVWDTTS 297 (338)
T ss_pred eeeccCCCCccccccccceEEEeeccc
Confidence 779999999999999999999999754
No 50
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5.9e-33 Score=272.66 Aligned_cols=240 Identities=15% Similarity=0.258 Sum_probs=214.0
Q ss_pred CcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEeCCCc
Q 001790 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (1012)
Q Consensus 406 ~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd~~~~ 485 (1012)
..+|..|.|.|+|+.|++|+..|.+.+|+..+-. -...++.|..+|+++.|+++|. +++||+.+|.|++|+.+-.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn---FEtilQaHDs~Vr~m~ws~~g~--wmiSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN---FETILQAHDSPVRTMKWSHNGT--WMISGDKGGMIKYWQPNMN 170 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceee---HHHHhhhhcccceeEEEccCCC--EEEEcCCCceEEecccchh
Confidence 4589999999999999999999999999975421 1123668999999999999999 8999999999999996666
Q ss_pred ceeeecCCc-cCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCC
Q 001790 486 KLFNFEGHE-APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1012)
Q Consensus 486 ~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 564 (1012)
.++.+.+|. ..|.+++|+|+ ...+++++.||+|+|||.........+.+|+-.|.++.|+|....+++++ .|.
T Consensus 171 nVk~~~ahh~eaIRdlafSpn--DskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgs----kDn 244 (464)
T KOG0284|consen 171 NVKIIQAHHAEAIRDLAFSPN--DSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGS----KDN 244 (464)
T ss_pred hhHHhhHhhhhhhheeccCCC--CceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEcc----CCc
Confidence 666676665 89999999884 36899999999999999999998889999999999999999999999998 478
Q ss_pred cEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeec-CCCE
Q 001790 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNL 643 (1012)
Q Consensus 565 ~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~g~~ 643 (1012)
.|++||.+++.++.++.+|.. .|..+.|++++++|++++.|..++++|+++.+.+..+..+ ...|+++.|+| ...+
T Consensus 245 lVKlWDprSg~cl~tlh~HKn-tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~H--kkdv~~~~WhP~~~~l 321 (464)
T KOG0284|consen 245 LVKLWDPRSGSCLATLHGHKN-TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGH--KKDVTSLTWHPLNESL 321 (464)
T ss_pred eeEeecCCCcchhhhhhhccc-eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcc--hhhheeeccccccccc
Confidence 999999999999999999987 8999999999999999999999999999988887777754 44899999999 6678
Q ss_pred EEEEECCCcEEEEEcc
Q 001790 644 LAVTTADNGFKILANA 659 (1012)
Q Consensus 644 l~~~~~dg~i~iwd~~ 659 (1012)
|.+|+.||.|..|.+.
T Consensus 322 ftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 322 FTSGGSDGSVVHWVVG 337 (464)
T ss_pred eeeccCCCceEEEecc
Confidence 8999999999999875
No 51
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=5.1e-33 Score=279.61 Aligned_cols=293 Identities=18% Similarity=0.296 Sum_probs=247.1
Q ss_pred CCccceEeec-CCCceEEEEEecCCCcEEEEecCCCeEEEEEccC-CceecccccccccccccCccccceeccCCCcceE
Q 001790 333 LPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS 410 (1012)
Q Consensus 333 ~~~~~~~~~~-h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 410 (1012)
+|...++++. |+..|+++.|.|..-+||++|+.|+.|+||++.. ++++.+ +.||..+|.
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrt-------------------f~gH~k~Vr 262 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRT-------------------FKGHRKPVR 262 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehh-------------------hhcchhhhh
Confidence 4566677766 9999999999994434999999999999999987 565543 889999999
Q ss_pred EEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceee
Q 001790 411 RVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (1012)
Q Consensus 411 ~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~ 489 (1012)
+++|+++|..+++++.|+.|++||+++|+++.. +. -...++|+.|.||+.+ .+++|+.|+.|+.|| .+|+.++.
T Consensus 263 d~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~---f~-~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvqe 337 (503)
T KOG0282|consen 263 DASFNNCGTSFLSASFDRFLKLWDTETGQVLSR---FH-LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQE 337 (503)
T ss_pred hhhccccCCeeeeeecceeeeeeccccceEEEE---Ee-cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHHH
Confidence 999999999999999999999999999987763 32 3456899999999966 788899999999999 99999999
Q ss_pred ecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeee-cCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEE
Q 001790 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1012)
Q Consensus 490 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~l 568 (1012)
+..|-+.|..+.|.+ +|..++++++|+++++|+.+..-..... ........++..+|+++++++-+. ++.|.+
T Consensus 338 Yd~hLg~i~~i~F~~--~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~i 411 (503)
T KOG0282|consen 338 YDRHLGAILDITFVD--EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIAI 411 (503)
T ss_pred HHhhhhheeeeEEcc--CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceEEE
Confidence 999999999999965 6689999999999999998876555433 233446788999999999998874 888999
Q ss_pred EeCCCC---eeeeeecCCCCCc-ceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeec-CCCE
Q 001790 569 WNESEG---TIKRTYAGFRKKS-NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNL 643 (1012)
Q Consensus 569 wd~~~~---~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~g~~ 643 (1012)
+.+... ...+.|.+|.... -..+.|||||.+|++|..||.+.+||.++-+++..+..+. ..+..+.|+| ....
T Consensus 412 fs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~--~~ci~v~wHP~e~Sk 489 (503)
T KOG0282|consen 412 FSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHD--QPCIGVDWHPVEPSK 489 (503)
T ss_pred EecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCC--cceEEEEecCCCcce
Confidence 986543 2345677775433 3448999999999999999999999999999999988764 4899999999 5678
Q ss_pred EEEEECCCcEEEEE
Q 001790 644 LAVTTADNGFKILA 657 (1012)
Q Consensus 644 l~~~~~dg~i~iwd 657 (1012)
+|+++.+|.|++|+
T Consensus 490 vat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 490 VATCGWDGLIKIWD 503 (503)
T ss_pred eEecccCceeEecC
Confidence 99999999999996
No 52
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6e-31 Score=245.04 Aligned_cols=243 Identities=15% Similarity=0.296 Sum_probs=207.1
Q ss_pred eeccCCCcceEEEEEccC-CCEEEEEECCCeEEEEeecCCCcceeeeee-eccccCeEEEEEeCCCCceEEEEEcCCCcE
Q 001790 400 SIFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQI-DAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1012)
Q Consensus 400 ~~~~~h~~~V~~v~~spd-g~~las~~~d~~v~vwd~~~~~~~~~~~~l-~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v 477 (1012)
..+.+|.+.|..++|+|- |..||+|+.|+.|+||+..++........+ .+|+..|++++|+|.|+ +|+++|.|.++
T Consensus 8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~--~La~aSFD~t~ 85 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR--YLASASFDATV 85 (312)
T ss_pred EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc--EEEEeeccceE
Confidence 348889999999999997 899999999999999999865544433333 37999999999999999 89999999999
Q ss_pred EEEe-CCC--cceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCC---ceeeecCCCCcEEEEEEccCCC
Q 001790 478 KVWE-LSG--RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG---SRVDYDAPGHWCTTMLYSADGS 551 (1012)
Q Consensus 478 ~vwd-~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~---~~~~~~~~~~~v~~~~~s~~~~ 551 (1012)
.||. ..+ +++.++.||...|.+++|+. +|.+|++++.|+.|-+|.++... +...+..|...|..+.|+|...
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~--sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d 163 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVAWSA--SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED 163 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEEEcC--CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc
Confidence 9999 433 67889999999999999966 66899999999999999987443 3457888999999999999999
Q ss_pred eEEEeeecCCCCCcEEEEeCC---CCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCC
Q 001790 552 RLFSCGTSKDGDSFLVEWNES---EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG 628 (1012)
Q Consensus 552 ~l~~~~~~~~~~~~i~lwd~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 628 (1012)
+|++++. |++|++|.-. ...+++++.+|+. .+.+++|++.|..+++++.|++++||...+. +. ..+
T Consensus 164 lL~S~SY----DnTIk~~~~~~dddW~c~~tl~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~-~~~ 232 (312)
T KOG0645|consen 164 LLFSCSY----DNTIKVYRDEDDDDWECVQTLDGHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LS-GMH 232 (312)
T ss_pred eeEEecc----CCeEEEEeecCCCCeeEEEEecCccc-eEEEEEecCCCceEEEecCCcceEeeeeccC-----cc-hhc
Confidence 9999996 9999999866 3468899999987 8999999999999999999999999986521 11 123
Q ss_pred CCCcceeEeecCCCEEEEEECCCcEEEEEcc
Q 001790 629 LPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1012)
Q Consensus 629 ~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~ 659 (1012)
...+..++|. ...||+++.|+.|++|.-.
T Consensus 233 sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 233 SRALYDVPWD--NGVIASGGGDDAIRLFKES 261 (312)
T ss_pred ccceEeeeec--ccceEeccCCCEEEEEEec
Confidence 3467889997 5589999999999998654
No 53
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.1e-32 Score=266.66 Aligned_cols=289 Identities=17% Similarity=0.272 Sum_probs=241.1
Q ss_pred eecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCC---eeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcE
Q 001790 533 DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG---TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQI 609 (1012)
Q Consensus 533 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 609 (1012)
.+..|...|.-+.||++|++||+++ .|.+..+|++... +...++.+|.. +|..+.||||.+++++++.+..+
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaS----kD~Taiiw~v~~d~~~kl~~tlvgh~~-~V~yi~wSPDdryLlaCg~~e~~ 293 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASAS----KDSTAIIWIVVYDVHFKLKKTLVGHSQ-PVSYIMWSPDDRYLLACGFDEVL 293 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeecc----CCceEEEEEEecCcceeeeeeeecccC-ceEEEEECCCCCeEEecCchHhe
Confidence 3456778899999999999999998 4888999987654 44778889988 89999999999999999999999
Q ss_pred EEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeecccc
Q 001790 610 KFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSA 689 (1012)
Q Consensus 610 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g 689 (1012)
.+||..+|.....+... ....+.+++|.|||..+++|+.|+++..||+....
T Consensus 294 ~lwDv~tgd~~~~y~~~-~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~--------------------------- 345 (519)
T KOG0293|consen 294 SLWDVDTGDLRHLYPSG-LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI--------------------------- 345 (519)
T ss_pred eeccCCcchhhhhcccC-cCCCcceeEEccCCceeEecCCCCcEEEecCCcch---------------------------
Confidence 99999999998888654 34478999999999999999999999999986531
Q ss_pred ccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEE
Q 001790 690 SSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVR 769 (1012)
Q Consensus 690 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 769 (1012)
+.-|.-. ....|.+
T Consensus 346 ------------------------------------------------~~~W~gv------------------r~~~v~d 359 (519)
T KOG0293|consen 346 ------------------------------------------------LGNWEGV------------------RDPKVHD 359 (519)
T ss_pred ------------------------------------------------hhccccc------------------ccceeEE
Confidence 1112111 2235788
Q ss_pred EEEecCcceEEEeeccCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEEE
Q 001790 770 LLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSA 849 (1012)
Q Consensus 770 l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~ 849 (1012)
++.++||+++++.+.|..+++|+...... .+ +. ....+|+++++|.||+++.+.
T Consensus 360 lait~Dgk~vl~v~~d~~i~l~~~e~~~d------------------r~------li--se~~~its~~iS~d~k~~Lvn 413 (519)
T KOG0293|consen 360 LAITYDGKYVLLVTVDKKIRLYNREARVD------------------RG------LI--SEEQPITSFSISKDGKLALVN 413 (519)
T ss_pred EEEcCCCcEEEEEecccceeeechhhhhh------------------hc------cc--cccCceeEEEEcCCCcEEEEE
Confidence 99999999999999999999997643211 00 11 156789999999999998887
Q ss_pred c-CCcEEEEEcCCCeEEEEEcCCCCC--eeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeEEecccCCCeEEEEEcCC
Q 001790 850 T-GGKISLFNMMTFKVMTTFMSPPPA--STFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTS 926 (1012)
Q Consensus 850 s-dg~i~lwd~~~~~~~~~~~~~~~~--i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spd 926 (1012)
- +..+++||++..+.++.+.||... +..-+|...+..++|+|++|+.|+||+..+|+++.++.||...|++|+|+|.
T Consensus 414 L~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~ 493 (519)
T KOG0293|consen 414 LQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPA 493 (519)
T ss_pred cccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCC
Confidence 6 899999999999999999998764 4455676646689999999999999999999999999999999999999995
Q ss_pred -CCEEEEEeCCCcEEEEeCCC
Q 001790 927 -LNILVSSGADAQLCVWSIDT 946 (1012)
Q Consensus 927 -g~~l~s~s~Dg~i~vwd~~~ 946 (1012)
-.++|++|+||+||||....
T Consensus 494 ~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 494 DPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CHHHhhccCCCCeEEEecCCc
Confidence 56799999999999998765
No 54
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.8e-29 Score=263.07 Aligned_cols=502 Identities=13% Similarity=0.165 Sum_probs=341.1
Q ss_pred CCcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeecc-ccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-C
Q 001790 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAH-VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (1012)
Q Consensus 405 h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h-~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~ 482 (1012)
...+|.++|||.+.+.||.+-.||.|.||++..+=.... .+.++ ...|.+++|++.++ |++.+.+|.|.-|| .
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~--vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP--VIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLH 98 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE--EEecCCCCceeeEEEccCCe---EEeecCCceEEEEecc
Confidence 467899999999999999999999999999998543332 45554 56799999996554 88999999999999 9
Q ss_pred CCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCcee--eecCCCCcEEEEEEccCCCeEEEeeecC
Q 001790 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV--DYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1012)
Q Consensus 483 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1012)
+++++..+....+.|++++.++.. ..++.|++||.+..++...+.... .+....+.+.+++|+|++..++.|+
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs--- 173 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGS--- 173 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecc---
Confidence 999999999999999999998755 689999999977777665544433 2334457899999999999999998
Q ss_pred CCCCcEEEEeCCCCeeeeeec-----CC--CCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcc
Q 001790 561 DGDSFLVEWNESEGTIKRTYA-----GF--RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (1012)
Q Consensus 561 ~~~~~i~lwd~~~~~~~~~~~-----~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1012)
.||.|++||..++..+.... .. ....|.++.|-.+ ..+++|...|+|.+||...+.+++....+.. .|.
T Consensus 174 -~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl 249 (691)
T KOG2048|consen 174 -IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVL 249 (691)
T ss_pred -cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhc--cee
Confidence 49999999999988776222 11 1223666666644 6889999999999999999999998886654 799
Q ss_pred eeEeecCCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeeccccccccccCCCCCccccccCCCCCCc
Q 001790 634 RLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSP 713 (1012)
Q Consensus 634 ~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~ 713 (1012)
+++.++++.++++++.|+.|.-+...+..... ........+...+.+++..++
T Consensus 250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~w--v~~~~r~~h~hdvrs~av~~~------------------------- 302 (691)
T KOG2048|consen 250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKSEW--VINSRRDLHAHDVRSMAVIEN------------------------- 302 (691)
T ss_pred EEEEcCCCCeEEEccCCCceEEEEecCCccce--eeeccccCCcccceeeeeecc-------------------------
Confidence 99999999999999999999988877664321 111222333344555555433
Q ss_pred cccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeeccCeeEeeec
Q 001790 714 IINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKW 793 (1012)
Q Consensus 714 ~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~ 793 (1012)
.+++|+.|..+.+-...........+....+ -.+.......++|+..-.+..+.+|.+
T Consensus 303 --------------~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p--------~~~~v~~a~~~~L~~~w~~h~v~lwrl 360 (691)
T KOG2048|consen 303 --------------ALISGGRDFTLAICSSREFKNMDHRQKNLFP--------ASDRVSVAPENRLLVLWKAHGVDLWRL 360 (691)
T ss_pred --------------eEEecceeeEEEEccccccCchhhhcccccc--------ccceeecCccceEEEEeccccccceec
Confidence 3345555544433322210000000000000 011111111222333333344444443
Q ss_pred cccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEEEcCCcEEEEEcCCCeEEEEEc----
Q 001790 794 HRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFM---- 869 (1012)
Q Consensus 794 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~---- 869 (1012)
.... +.|+ .....+....++ ....|.|.++||||+++|.+.-..+++|.+.....+....
T Consensus 361 GS~~--~~g~-----------~~~~~Llkl~~k---~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~ 424 (691)
T KOG2048|consen 361 GSVI--LQGE-----------YNYIHLLKLFTK---EKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDV 424 (691)
T ss_pred cCcc--cccc-----------cChhhheeeecC---CccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccc
Confidence 2211 0000 000011221222 5678999999999999999987788888886533222211
Q ss_pred -CCCCCeeEEEEecCCCcEEEEEe-CCCeEEEEEccCCe--EeEEec--ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001790 870 -SPPPASTFLAFHPQDNNIIAIGT-EDSTIHIYNVRVDE--VKSKLK--GHQKRITGLAFSTSLNILVSSGADAQLCVWS 943 (1012)
Q Consensus 870 -~~~~~i~~l~~sp~d~~~las~~-~dg~v~iwd~~~~~--~~~~~~--~h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd 943 (1012)
...-....+.|+- ++..++.++ .+..+.++++++.. .+..+. +-...|..+..||+|+++|..+.+|.|.+|+
T Consensus 425 ~~~~~~a~~i~fti-d~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~n 503 (691)
T KOG2048|consen 425 PLALLDASAISFTI-DKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYN 503 (691)
T ss_pred hhhhccceeeEEEe-cCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEE
Confidence 1223567788888 666666666 77888888887653 222222 3456899999999999999999999999999
Q ss_pred CCCCCccccEEEecCCCCCCCCceEEEEcC-CCCEEEEE-eCCeEEEEECC
Q 001790 944 IDTWEKRKSVTIHIPAGKTPTGDTRVQFNA-DQVRMLVV-HETQLAIYDAS 992 (1012)
Q Consensus 944 ~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~-d~~~l~~~-~d~~i~vwd~~ 992 (1012)
+++++... +. ......|+.++|+| +...|+++ +++++.-||++
T Consensus 504 l~~~~~~~---l~---~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~ 548 (691)
T KOG2048|consen 504 LETLESHL---LK---VRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIE 548 (691)
T ss_pred cccceeec---ch---hccCcceeeeeccccccCcEEEEecCCeEEEEecc
Confidence 99976321 11 11116789999995 44556665 89999999994
No 55
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.2e-32 Score=291.16 Aligned_cols=246 Identities=19% Similarity=0.335 Sum_probs=225.6
Q ss_pred CCcceEEEEEccCCCEEEEEECCCeEEEEeecCCC--------c--------------------ceeeeeeeccccCeEE
Q 001790 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN--------D--------------------LRQHSQIDAHVGAVND 456 (1012)
Q Consensus 405 h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~--------~--------------------~~~~~~l~~h~~~v~~ 456 (1012)
....++|..||+|+.+||.|..|..|++|.+...+ . -....++.||.++|..
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg 456 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG 456 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence 34579999999999999999999999999987311 0 0122357899999999
Q ss_pred EEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeec
Q 001790 457 LAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD 535 (1012)
Q Consensus 457 l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~ 535 (1012)
+.|+|+.+ +|++|+.|+++++|. .+..++..++||..+|+.+.|+| .|-+++|++.|++.++|..+...+...+.
T Consensus 457 ~sFsPd~r--fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P--~GyYFatas~D~tArLWs~d~~~PlRifa 532 (707)
T KOG0263|consen 457 CSFSPDRR--FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP--RGYYFATASHDQTARLWSTDHNKPLRIFA 532 (707)
T ss_pred eeeccccc--ceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC--CceEEEecCCCceeeeeecccCCchhhhc
Confidence 99999999 899999999999999 88889999999999999999976 57899999999999999999999999999
Q ss_pred CCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCC
Q 001790 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1012)
Q Consensus 536 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 615 (1012)
+|.+.|.|+.|+|+..++++|+. |.++++||+.+|..++.|.||.. +|.+++|+|+|.+|++|+.||.|.+||+.
T Consensus 533 ghlsDV~cv~FHPNs~Y~aTGSs----D~tVRlWDv~~G~~VRiF~GH~~-~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 533 GHLSDVDCVSFHPNSNYVATGSS----DRTVRLWDVSTGNSVRIFTGHKG-PVTALAFSPCGRYLASGDEDGLIKIWDLA 607 (707)
T ss_pred ccccccceEEECCcccccccCCC----CceEEEEEcCCCcEEEEecCCCC-ceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence 99999999999999999999984 99999999999999999999987 99999999999999999999999999999
Q ss_pred CCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCC
Q 001790 616 NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1012)
Q Consensus 616 ~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~ 661 (1012)
+++++..+..| .+.|.++.|+.+|..||+|+.|+.|++||+...
T Consensus 608 ~~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 608 NGSLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CCcchhhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999888866 558999999999999999999999999998654
No 56
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=100.00 E-value=3.7e-31 Score=272.88 Aligned_cols=594 Identities=17% Similarity=0.220 Sum_probs=332.1
Q ss_pred cCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE
Q 001790 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1012)
Q Consensus 342 ~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 421 (1012)
.|++.|+.+.|||-...|||+|+.|..|+||.+..|-... +.-....+.+..-.|.|+.|+|...-|
T Consensus 77 ~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~-------------LSape~~~g~~~~~vE~l~fHpTaDgi 143 (1012)
T KOG1445|consen 77 AHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK-------------LSAPEIDVGGGNVIVECLRFHPTADGI 143 (1012)
T ss_pred cccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc-------------cCCcceeecCCceEEEEeecccCcCce
Confidence 3999999999999877799999999999999998543211 001222355556688999999966666
Q ss_pred EEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe--CCCcceeeecCCccC-EE
Q 001790 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAP-VY 498 (1012)
Q Consensus 422 as~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd--~~~~~~~~~~~h~~~-v~ 498 (1012)
...+..|+++|||+.+++.+. .+.+|...|.++.|+.||. ++++++.|+.|+||| ..+++++...+|.+. -.
T Consensus 144 l~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~H~~~rds 218 (1012)
T KOG1445|consen 144 LASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDS 218 (1012)
T ss_pred EEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCccccccccccchhh
Confidence 666678899999999988666 6889999999999999999 999999999999999 788999999998763 22
Q ss_pred EEeccccCCceEEEEEecC----CeEEEEEcCCCCcee-eecCC-CCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCC
Q 001790 499 SICPHHKENIQFIFSTAID----GKIKAWLYDTMGSRV-DYDAP-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (1012)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~d----g~i~~wd~~~~~~~~-~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~ 572 (1012)
.+.| -++-..|++.+.+ ..|++||.+...... ++... ...|.---|.||.++++.++. ++..+..+.+.
T Consensus 219 Rv~w--~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGK---G~~~l~~lE~~ 293 (1012)
T KOG1445|consen 219 RVLW--AGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGK---GTNKLFMLEMQ 293 (1012)
T ss_pred eeee--ccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecC---CcceEEEEEec
Confidence 3444 3344467666654 578999987654322 22221 224555668899999988875 67888888776
Q ss_pred CCeeee--eecCCCCCcceEEEEecCCCEEEEEeC-CCc---------------------------------------EE
Q 001790 573 EGTIKR--TYAGFRKKSNGVVQFDTTQNHFLAVGE-DSQ---------------------------------------IK 610 (1012)
Q Consensus 573 ~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~---------------------------------------i~ 610 (1012)
..+... .+...-.......++.|....-+-.++ +.. -.
T Consensus 294 d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ag 373 (1012)
T KOG1445|consen 294 DRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTAG 373 (1012)
T ss_pred CCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCcc
Confidence 544321 111000000011111111100000000 000 00
Q ss_pred EEeCCCCeeEEEEecC----CC------------------CCCcceeEeecCCC-EEEEEEC-------------CCcEE
Q 001790 611 FWDMDNVNILTSTDAE----GG------------------LPNLPRLRFSKEGN-LLAVTTA-------------DNGFK 654 (1012)
Q Consensus 611 iwd~~~~~~~~~~~~~----~~------------------~~~v~~v~~s~~g~-~l~~~~~-------------dg~i~ 654 (1012)
-|=-.+.+.+...... .| ..+|......|... ..-..++ ...++
T Consensus 374 eWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~~e~r 453 (1012)
T KOG1445|consen 374 EWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKKEEVR 453 (1012)
T ss_pred ceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcCcchhhh
Confidence 0110111111111000 00 00000000000000 0000000 00000
Q ss_pred EEEccCCceeeecccCCcc----ccccCccceeeeccccccccccCCC----CCccc-------cccCCCCCCccccCCC
Q 001790 655 ILANAIGLRSLRAVENPPF----EALRTPIESVALKVSASSAVSSGTP----ANCKV-------ERSSPVRPSPIINGVD 719 (1012)
Q Consensus 655 iwd~~~~~~~~~~~~~~~~----~~~~~~v~~v~~s~~g~~l~~~~~~----~~~~~-------~~~~~~~~~~~~~~~~ 719 (1012)
-.+............+... ....+++.. .+|....++-..+. ..... ....+.+....+ .
T Consensus 454 ~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~--~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~---g 528 (1012)
T KOG1445|consen 454 ELDYRPYEKENGVHTPNADADSTQGNSSPIST--ISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNF---G 528 (1012)
T ss_pred hhcccccccccCccCCCcccccccCCCCCccc--cCCCcccccCCCCcccccccccccccCccccccCCCCCCccc---C
Confidence 0000000000000000000 000011110 01111111100000 00000 000010000000 0
Q ss_pred CCCCCCCCCcccccc------cCCCCCcceeEEeec------CceEE--EecCCCCCCCCceEEEEEecCcceEEEeecc
Q 001790 720 PTSRSMDKPRTVDDV------TDKPKPWQLAEIVDS------GQCRL--VTMPESTDTSSKVVRLLYTNSAVGLLALGSN 785 (1012)
Q Consensus 720 ~~~~~~~~~l~~~~~------d~~i~~w~~~~~~~~------~~~~~--~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 785 (1012)
...+.......+.+. -|.+.-+....+... ..++. .++|+ +...++.+...-.+-.++..
T Consensus 529 ~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~Pg------EsnGfcan~~rvAVPL~g~g 602 (1012)
T KOG1445|consen 529 KPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPG------ESNGFCANNKRVAVPLAGSG 602 (1012)
T ss_pred CCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCC------ccCceeeccceEEEEecCCC
Confidence 000111111111100 011111111110000 00011 11111 22223332222223344567
Q ss_pred CeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEee-CCCEEEEEc-CCcEEEEEcCCC-
Q 001790 786 GVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK-NDSYVMSAT-GGKISLFNMMTF- 862 (1012)
Q Consensus 786 g~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~la~~s-dg~i~lwd~~~~- 862 (1012)
|.|-+|++......++|.... .-....|+.+.|.| |...||+++ ||.|++|.+..+
T Consensus 603 G~iai~el~~PGrLPDgv~p~---------------------l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~g 661 (1012)
T KOG1445|consen 603 GVIAIYELNEPGRLPDGVMPG---------------------LFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANG 661 (1012)
T ss_pred ceEEEEEcCCCCCCCcccccc---------------------cccCceeeecccCCCChHHeeecccCceEEEEEeccCC
Confidence 999999988766656554322 22567799999998 778888888 899999998755
Q ss_pred ------eEEEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeEEecccCCCeEEEEEcCCCCEEEEEeCC
Q 001790 863 ------KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGAD 936 (1012)
Q Consensus 863 ------~~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D 936 (1012)
..-..+.+|...|+.+.|+|-....|++++.|-+|++||+.+++....+.+|++.|..++|||||+.+|+.+.|
T Consensus 662 l~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKD 741 (1012)
T KOG1445|consen 662 LPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKD 741 (1012)
T ss_pred CCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecC
Confidence 33456788999999999999778899999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCCccccEEEecCCCCCCCCceEEEEcCCCCEEEEE-----eCCeEEEEECCCc
Q 001790 937 AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-----HETQLAIYDASKM 994 (1012)
Q Consensus 937 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~-----~d~~i~vwd~~~~ 994 (1012)
|+|+||+..+++.. +....+.....-..+.|.-||+++++. ++.+|.+||..+.
T Consensus 742 g~~rVy~Prs~e~p----v~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 742 GTLRVYEPRSREQP----VYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTL 800 (1012)
T ss_pred ceEEEeCCCCCCCc----cccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhc
Confidence 99999999887642 111111111334678899999999885 3568999997763
No 57
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.3e-30 Score=277.68 Aligned_cols=282 Identities=26% Similarity=0.419 Sum_probs=249.4
Q ss_pred cCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE
Q 001790 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1012)
Q Consensus 342 ~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 421 (1012)
+|.++|++++|+|+++ ++++|+.||.|.+|++.+++... .+.+|...+.++.|+|+++++
T Consensus 7 ~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~-------------------~~~~~~~~i~~~~~~~~~~~l 66 (289)
T cd00200 7 GHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLR-------------------TLKGHTGPVRDVAASADGTYL 66 (289)
T ss_pred ccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEE-------------------EEecCCcceeEEEECCCCCEE
Confidence 4889999999999998 78999999999999998776432 256788899999999999999
Q ss_pred EEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCCccCEEEE
Q 001790 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1012)
Q Consensus 422 as~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~v~~~ 500 (1012)
++++.||.|++||+.+++.+. .+..|...|.++.|+++++ ++++++.|+.|++|| .+++....+..|...+.++
T Consensus 67 ~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 141 (289)
T cd00200 67 ASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV 141 (289)
T ss_pred EEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEE
Confidence 999999999999999876555 5678999999999999977 788888899999999 6688888888999999999
Q ss_pred eccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeee
Q 001790 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1012)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~ 580 (1012)
+|++. +.++++++.+|.|++||++..+....+..+...+.++.|+|+++.+++++ .++.+++||+.+++.+..+
T Consensus 142 ~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~~~~i~i~d~~~~~~~~~~ 215 (289)
T cd00200 142 AFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS----SDGTIKLWDLSTGKCLGTL 215 (289)
T ss_pred EEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEec----CCCcEEEEECCCCceecch
Confidence 99774 56888888899999999998888878888888999999999999999887 4899999999999988888
Q ss_pred cCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEE
Q 001790 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1012)
Q Consensus 581 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd 657 (1012)
..+.. .+..+.|++++.++++++.+|.|++|++.+++....+..+ ...+.+++|+|++..+++++.||.+++|+
T Consensus 216 ~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 216 RGHEN-GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH--TNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred hhcCC-ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc--CCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 77765 7899999999888888888999999999988888877743 44799999999999999999999999995
No 58
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.98 E-value=1.4e-31 Score=245.52 Aligned_cols=290 Identities=19% Similarity=0.272 Sum_probs=254.9
Q ss_pred ccceEeecCCCceEEEEEec---CCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEE
Q 001790 335 RTVAVSLHQGSTVISMDFHP---SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (1012)
Q Consensus 335 ~~~~~~~~h~~~V~~~~~sp---dg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 411 (1012)
+..+..-+|+.+|-.++||| +|- +|+++++||.-.+=+-++|.-+.+ +.||.+.|.+
T Consensus 5 ~~pl~c~ghtrpvvdl~~s~itp~g~-flisa~kd~~pmlr~g~tgdwigt-------------------feghkgavw~ 64 (334)
T KOG0278|consen 5 QTPLTCHGHTRPVVDLAFSPITPDGY-FLISASKDGKPMLRNGDTGDWIGT-------------------FEGHKGAVWS 64 (334)
T ss_pred cCceEEcCCCcceeEEeccCCCCCce-EEEEeccCCCchhccCCCCCcEEe-------------------eeccCcceee
Confidence 34555667999999999986 776 899999999988888888887754 8899999999
Q ss_pred EEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe--CCCcceee
Q 001790 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFN 489 (1012)
Q Consensus 412 v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd--~~~~~~~~ 489 (1012)
...+.+....|+++.|-+-+|||.-+|..+.. + .|..-|.+++|+.|.+ +|++|+.++.++|+| ....+...
T Consensus 65 ~~l~~na~~aasaaadftakvw~a~tgdelhs---f-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E 138 (334)
T KOG0278|consen 65 ATLNKNATRAASAAADFTAKVWDAVTGDELHS---F-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKE 138 (334)
T ss_pred eecCchhhhhhhhcccchhhhhhhhhhhhhhh---h-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchh
Confidence 99999999999999999999999999987763 3 5889999999999999 799999999999999 44567789
Q ss_pred ecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEE
Q 001790 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (1012)
Q Consensus 490 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lw 569 (1012)
+.+|++.|..+.|.... +.+++++.|++||+||.+++.....+.. ..+|+++.++++|++|.++. .+.|.+|
T Consensus 139 ~~ghtg~Ir~v~wc~eD--~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~-----gssV~Fw 210 (334)
T KOG0278|consen 139 ISGHTGGIRTVLWCHED--KCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAY-----GSSVKFW 210 (334)
T ss_pred hcCCCCcceeEEEeccC--ceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEec-----CceeEEe
Confidence 99999999999997643 6788889999999999999888877664 45699999999999988875 7789999
Q ss_pred eCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEEC
Q 001790 570 NESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (1012)
Q Consensus 570 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~ 649 (1012)
|..+-..++.+.... .|.+.+++|+...+++|++|+.++.||..+++.+..+ ..++.++|.|+.|+|+|...|+|+.
T Consensus 211 daksf~~lKs~k~P~--nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~-nkgh~gpVhcVrFSPdGE~yAsGSE 287 (334)
T KOG0278|consen 211 DAKSFGLLKSYKMPC--NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY-NKGHFGPVHCVRFSPDGELYASGSE 287 (334)
T ss_pred ccccccceeeccCcc--ccccccccCCCceEEecCcceEEEEEeccCCceeeec-ccCCCCceEEEEECCCCceeeccCC
Confidence 999999998887654 4888999999999999999999999999999988876 3456679999999999999999999
Q ss_pred CCcEEEEEccCC
Q 001790 650 DNGFKILANAIG 661 (1012)
Q Consensus 650 dg~i~iwd~~~~ 661 (1012)
||+|++|....+
T Consensus 288 DGTirlWQt~~~ 299 (334)
T KOG0278|consen 288 DGTIRLWQTTPG 299 (334)
T ss_pred CceEEEEEecCC
Confidence 999999998665
No 59
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=2.1e-31 Score=268.04 Aligned_cols=298 Identities=18% Similarity=0.263 Sum_probs=248.3
Q ss_pred CCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCC-CCceeeecCCCCcEEEEEEccCCCeEEEeeecCC
Q 001790 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKD 561 (1012)
Q Consensus 483 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 561 (1012)
..+.+.++.||+..|.++.|.|. .+.+|++++.|+.|++|++.. ++++.++.+|..+|..++|+++|..+++++.
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~-~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sf--- 278 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPK-KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASF--- 278 (503)
T ss_pred cHhheeeccCCccccchhhhccc-eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeec---
Confidence 44567889999999999999875 468999999999999999877 6778889999999999999999999999996
Q ss_pred CCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCC-CEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecC
Q 001790 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1012)
Q Consensus 562 ~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 640 (1012)
|+.|++||+++|+++..|... ..++++.|+|++ +.+++|+.|+.|+.||+++++.++.+..+ .+.|..+.|-++
T Consensus 279 -D~~lKlwDtETG~~~~~f~~~--~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~h--Lg~i~~i~F~~~ 353 (503)
T KOG0282|consen 279 -DRFLKLWDTETGQVLSRFHLD--KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRH--LGAILDITFVDE 353 (503)
T ss_pred -ceeeeeeccccceEEEEEecC--CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhh--hhheeeeEEccC
Confidence 999999999999999998754 378999999999 88999999999999999999998888755 448999999999
Q ss_pred CCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeeccccccccccCCCCCccccccCCCCCCccccCCCC
Q 001790 641 GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDP 720 (1012)
Q Consensus 641 g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1012)
|+.+++.++|+.++||+...+........
T Consensus 354 g~rFissSDdks~riWe~~~~v~ik~i~~--------------------------------------------------- 382 (503)
T KOG0282|consen 354 GRRFISSSDDKSVRIWENRIPVPIKNIAD--------------------------------------------------- 382 (503)
T ss_pred CceEeeeccCccEEEEEcCCCccchhhcc---------------------------------------------------
Confidence 99999999999999999876521110000
Q ss_pred CCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeeccCeeEeeeccccccCC
Q 001790 721 TSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNP 800 (1012)
Q Consensus 721 ~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~ 800 (1012)
.+.....++..+|++.++++-+.|+.|.+|.....-.
T Consensus 383 -----------------------------------------~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r-- 419 (503)
T KOG0282|consen 383 -----------------------------------------PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR-- 419 (503)
T ss_pred -----------------------------------------hhhccCcceecCCCCCeehhhccCceEEEEecccccc--
Confidence 0223456788889999999999999999886432110
Q ss_pred CCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEEEc-CCcEEEEEcCCCeEEEEEcCCCCCeeEEE
Q 001790 801 SGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLA 879 (1012)
Q Consensus 801 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~i~~l~ 879 (1012)
. -....+.|..-.+--..+.|||||.+|++|+ ||.+.+||..+-+.+..+.+|...+..+.
T Consensus 420 --------------~----nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~ 481 (503)
T KOG0282|consen 420 --------------L----NKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVD 481 (503)
T ss_pred --------------c----CHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEE
Confidence 0 0111233322334456689999999999998 99999999999999999999999999999
Q ss_pred EecCCCcEEEEEeCCCeEEEEE
Q 001790 880 FHPQDNNIIAIGTEDSTIHIYN 901 (1012)
Q Consensus 880 ~sp~d~~~las~~~dg~v~iwd 901 (1012)
|+|.....+|+++.||.|++|+
T Consensus 482 wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 482 WHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ecCCCcceeEecccCceeEecC
Confidence 9997788999999999999996
No 60
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1.7e-29 Score=305.09 Aligned_cols=291 Identities=13% Similarity=0.178 Sum_probs=235.8
Q ss_pred cCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc-CCCE
Q 001790 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNY 420 (1012)
Q Consensus 342 ~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~ 420 (1012)
.|.+.|++++|+|+|+ ++|+|+.|+.|+||++........ . .......+. +...|.+++|+| ++.+
T Consensus 481 ~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-~----------~~~~~~~~~-~~~~v~~l~~~~~~~~~ 547 (793)
T PLN00181 481 NSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-D----------IHYPVVELA-SRSKLSGICWNSYIKSQ 547 (793)
T ss_pred CCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-c----------cccceEEec-ccCceeeEEeccCCCCE
Confidence 3899999999999999 799999999999999764211000 0 000001122 346899999988 5789
Q ss_pred EEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeC-CCCceEEEEEcCCCcEEEEe-CCCcceeeecCCccCEE
Q 001790 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (1012)
Q Consensus 421 las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~-~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~v~ 498 (1012)
||+++.||+|++||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++|| .++..+..+..+ ..+.
T Consensus 548 las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~ 621 (793)
T PLN00181 548 VASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-ANIC 621 (793)
T ss_pred EEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CCeE
Confidence 9999999999999999887655 5779999999999997 667 899999999999999 778888888755 5788
Q ss_pred EEeccccCCceEEEEEecCCeEEEEEcCCCC-ceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCC---
Q 001790 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG--- 574 (1012)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~--- 574 (1012)
++.|++ +++.++++|+.||.|++||++... ....+..|...|.++.|. ++.++++++ .|+.|++||+..+
T Consensus 622 ~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s----~D~~ikiWd~~~~~~~ 695 (793)
T PLN00181 622 CVQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSS----TDNTLKLWDLSMSISG 695 (793)
T ss_pred EEEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEE----CCCEEEEEeCCCCccc
Confidence 888854 357899999999999999998765 355677888899999997 778888888 4999999999743
Q ss_pred ---eeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEe-----------cCCCCCCcceeEeecC
Q 001790 575 ---TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD-----------AEGGLPNLPRLRFSKE 640 (1012)
Q Consensus 575 ---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~~~v~~v~~s~~ 640 (1012)
..+..+.+|.. .+..++|++++++|++|+.||.|++|+......+..+. ...+...|.+++|+|+
T Consensus 696 ~~~~~l~~~~gh~~-~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~ 774 (793)
T PLN00181 696 INETPLHSFMGHTN-VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQ 774 (793)
T ss_pred cCCcceEEEcCCCC-CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCC
Confidence 56778888876 78899999999999999999999999987665443322 1223345899999999
Q ss_pred CCEEEEEECCCcEEEEEc
Q 001790 641 GNLLAVTTADNGFKILAN 658 (1012)
Q Consensus 641 g~~l~~~~~dg~i~iwd~ 658 (1012)
+..|++|+.+|.|++|++
T Consensus 775 ~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 775 SSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCeEEEecCCCcEEEEec
Confidence 999999999999999986
No 61
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=7e-30 Score=285.19 Aligned_cols=248 Identities=22% Similarity=0.373 Sum_probs=221.1
Q ss_pred CCcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe--C
Q 001790 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--L 482 (1012)
Q Consensus 405 h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd--~ 482 (1012)
|...|.++.|+++|+++++++.|+.+++|+..+++. .....+.+|...|.+++|+|+++ ++++++.|++|++|| .
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~--~l~s~s~D~tiriwd~~~ 234 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGS--YLLSGSDDKTLRIWDLKD 234 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCc--EEEEecCCceEEEeeccC
Confidence 478999999999999999999999999999977662 22235689999999999999999 899999999999999 4
Q ss_pred CCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCC
Q 001790 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (1012)
Q Consensus 483 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 562 (1012)
.+..++++.+|...|++++|++. ++++++|+.|++|++||++++.....+..|...|++++|+++++++++++ .
T Consensus 235 ~~~~~~~l~gH~~~v~~~~f~p~--g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s----~ 308 (456)
T KOG0266|consen 235 DGRNLKTLKGHSTYVTSVAFSPD--GNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSAS----Y 308 (456)
T ss_pred CCeEEEEecCCCCceEEEEecCC--CCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcC----C
Confidence 45788999999999999999874 48999999999999999999999999999999999999999999999997 4
Q ss_pred CCcEEEEeCCCCe--eeeeecCCCCC-cceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCC-CCcceeEee
Q 001790 563 DSFLVEWNESEGT--IKRTYAGFRKK-SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL-PNLPRLRFS 638 (1012)
Q Consensus 563 ~~~i~lwd~~~~~--~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s 638 (1012)
|+.|++||+.++. +...+.++... .+..+.|+|++.++++++.|+.+++||+..+.....+..+... ..+.+...+
T Consensus 309 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (456)
T KOG0266|consen 309 DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLS 388 (456)
T ss_pred CccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccccc
Confidence 9999999999999 66788877775 6899999999999999999999999999999988888766543 133445557
Q ss_pred cCCCEEEEEECCCcEEEEEccCC
Q 001790 639 KEGNLLAVTTADNGFKILANAIG 661 (1012)
Q Consensus 639 ~~g~~l~~~~~dg~i~iwd~~~~ 661 (1012)
+.+.++++|+.|+.|.+|+..++
T Consensus 389 ~~~~~i~sg~~d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 389 TGGKLIYSGSEDGSVYVWDSSSG 411 (456)
T ss_pred CCCCeEEEEeCCceEEEEeCCcc
Confidence 79999999999999999999875
No 62
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=2.1e-31 Score=255.65 Aligned_cols=230 Identities=16% Similarity=0.302 Sum_probs=203.4
Q ss_pred CcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCC
Q 001790 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1012)
Q Consensus 406 ~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~ 484 (1012)
...|+|+.+ |...+++|..|++|+|||..+-.+++ .+.||++.|.|+.|. .+ .+++|+.|.+|++|| .+|
T Consensus 197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred CCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccCC
Confidence 457999998 57789999999999999999987777 688999999999995 55 899999999999999 999
Q ss_pred cceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCce---eeecCCCCcEEEEEEccCCCeEEEeeecCC
Q 001790 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR---VDYDAPGHWCTTMLYSADGSRLFSCGTSKD 561 (1012)
Q Consensus 485 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 561 (1012)
+++.++-+|...|..+.|+. .++++++.|.++.+||+...... ..+.+|...|+.+.|+ .+++++++
T Consensus 268 e~l~tlihHceaVLhlrf~n----g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsAS---- 337 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFSN----GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSAS---- 337 (499)
T ss_pred chhhHHhhhcceeEEEEEeC----CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEec----
Confidence 99999999999999999842 48999999999999999876543 3577889999999885 45999888
Q ss_pred CCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCC
Q 001790 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641 (1012)
Q Consensus 562 ~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g 641 (1012)
+|.+|++|++.+++.++++.+|.. .|.|+.+ .++++++|+.|.+|++||++.|.++..+..+.. -|.++.| |.
T Consensus 338 gDRTikvW~~st~efvRtl~gHkR-GIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe--LvRciRF--d~ 410 (499)
T KOG0281|consen 338 GDRTIKVWSTSTCEFVRTLNGHKR-GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRF--DN 410 (499)
T ss_pred CCceEEEEeccceeeehhhhcccc-cceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHH--hhhheee--cC
Confidence 599999999999999999999987 6777665 478999999999999999999999999886544 7999999 66
Q ss_pred CEEEEEECCCcEEEEEccCC
Q 001790 642 NLLAVTTADNGFKILANAIG 661 (1012)
Q Consensus 642 ~~l~~~~~dg~i~iwd~~~~ 661 (1012)
+.+++|+.||+|++||+..+
T Consensus 411 krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 411 KRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred ceeeeccccceEEEEecccc
Confidence 78999999999999999775
No 63
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.9e-30 Score=232.56 Aligned_cols=248 Identities=19% Similarity=0.254 Sum_probs=219.8
Q ss_pred cceeccCCCcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcE
Q 001790 398 QASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1012)
Q Consensus 398 ~~~~~~~h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v 477 (1012)
..+++..|.++|..+.|+-||+|.++|+.|.+|++|+...|..++ ++.+|...|..++.+.|+. .|++|+.|+.+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v 83 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAV 83 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceE
Confidence 335688899999999999999999999999999999999998887 7889999999999999998 79999999999
Q ss_pred EEEe-CCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCC--ceeeecCCCCcEEEEEEccCCCeEE
Q 001790 478 KVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDAPGHWCTTMLYSADGSRLF 554 (1012)
Q Consensus 478 ~vwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~ 554 (1012)
.+|| .+|+.++.|.+|.+.|+.+.|+. +...+++|+.|.++++||.++.. ++..+......|.++.++ +..++
T Consensus 84 ~vwDV~TGkv~Rr~rgH~aqVNtV~fNe--esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIv 159 (307)
T KOG0316|consen 84 QVWDVNTGKVDRRFRGHLAQVNTVRFNE--ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIV 159 (307)
T ss_pred EEEEcccCeeeeecccccceeeEEEecC--cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEE
Confidence 9999 99999999999999999999955 56899999999999999998754 445555566678888774 55788
Q ss_pred EeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcce
Q 001790 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1012)
Q Consensus 555 ~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1012)
+|+ -||+++.||++.|+....+-++ +|++++|+++++..++++.|+++++.|-.+|+++..+..+....-=..
T Consensus 160 aGS----~DGtvRtydiR~G~l~sDy~g~---pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykld 232 (307)
T KOG0316|consen 160 AGS----VDGTVRTYDIRKGTLSSDYFGH---PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLD 232 (307)
T ss_pred eec----cCCcEEEEEeecceeehhhcCC---cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeee
Confidence 887 4999999999999988887776 899999999999999999999999999999999998887665444456
Q ss_pred eEeecCCCEEEEEECCCcEEEEEccCC
Q 001790 635 LRFSKEGNLLAVTTADNGFKILANAIG 661 (1012)
Q Consensus 635 v~~s~~g~~l~~~~~dg~i~iwd~~~~ 661 (1012)
.+++.....+++|++||.+.+||+.+.
T Consensus 233 c~l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 233 CCLNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred eeecccceeEEeccCCceEEEEEeccc
Confidence 778888889999999999999999876
No 64
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1.2e-28 Score=264.43 Aligned_cols=246 Identities=24% Similarity=0.396 Sum_probs=217.7
Q ss_pred ccCCCcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe
Q 001790 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1012)
Q Consensus 402 ~~~h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd 481 (1012)
+.+|.++|.+++|+|++++|++++.||.|++|++.+++... .+..|...+..+.|+++++ .+++++.||.|++||
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~ 79 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD 79 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence 66899999999999999999999999999999999876444 5778999999999999998 799999999999999
Q ss_pred -CCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecC
Q 001790 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1012)
Q Consensus 482 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1012)
.+++.+..+..|...+.++.|++. +.++++++.+|.+++||+++.+....+..+...+.++.|+|++.++++++
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--- 154 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSS--- 154 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEc---
Confidence 777888888999999999999764 56888888899999999998787777888888999999999988888876
Q ss_pred CCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecC
Q 001790 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1012)
Q Consensus 561 ~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 640 (1012)
.++.|++||+++++....+..+.. .+.++.|+|+++.+++++.+|.|++||+..++.+..+..+ ...+.++.|+|+
T Consensus 155 -~~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~ 230 (289)
T cd00200 155 -QDGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH--ENGVNSVAFSPD 230 (289)
T ss_pred -CCCcEEEEEccccccceeEecCcc-ccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhc--CCceEEEEEcCC
Confidence 488999999999998888887765 7999999999999999999999999999988888777543 337899999999
Q ss_pred CCEEEEEECCCcEEEEEccCC
Q 001790 641 GNLLAVTTADNGFKILANAIG 661 (1012)
Q Consensus 641 g~~l~~~~~dg~i~iwd~~~~ 661 (1012)
+.++++++.+|.+++|+..++
T Consensus 231 ~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 231 GYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred CcEEEEEcCCCcEEEEEcCCc
Confidence 989988888999999998654
No 65
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=2.9e-29 Score=237.53 Aligned_cols=309 Identities=15% Similarity=0.220 Sum_probs=241.7
Q ss_pred ceEeecCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceec-ccccccccccccCccccceeccCCCcceEEEEEc
Q 001790 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLV-SKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1012)
Q Consensus 337 ~~~~~~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 415 (1012)
..+...|++++.+.+|||||. ++|+|+.|.+|+|.|++..-... .+.+..-+.+. ..|. -+.+..|.++|.++.|+
T Consensus 105 t~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa-~hPv-IRTlYDH~devn~l~FH 181 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQA-RHPV-IRTLYDHVDEVNDLDFH 181 (430)
T ss_pred eEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCccc-CCce-EeehhhccCcccceeec
Confidence 344556999999999999999 89999999999999986211000 00000001111 1111 24578899999999999
Q ss_pred cCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeee---c
Q 001790 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF---E 491 (1012)
Q Consensus 416 pdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~---~ 491 (1012)
|....|++|+.|++|+++|+......+.+..+ ....+|.++.|+|.|. +++.|..-.++++|| .+-++...- .
T Consensus 182 Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanPd~ 258 (430)
T KOG0640|consen 182 PRETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANPDD 258 (430)
T ss_pred chhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCccc
Confidence 99999999999999999999865433333233 3567899999999999 899999889999999 666554332 4
Q ss_pred CCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeec-CC-CCcEEEEEEccCCCeEEEeeecCCCCCcEEEE
Q 001790 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-AP-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (1012)
Q Consensus 492 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lw 569 (1012)
+|++.|+++.+++ .+.+.++++.||.|++||--+.+++.++. .| +..|.+..|..+|+++++.+ .|..+++|
T Consensus 259 qht~ai~~V~Ys~--t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG----~DS~vkLW 332 (430)
T KOG0640|consen 259 QHTGAITQVRYSS--TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG----KDSTVKLW 332 (430)
T ss_pred ccccceeEEEecC--CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecC----Ccceeeee
Confidence 6999999998865 66899999999999999988888877654 34 34899999999999999998 59999999
Q ss_pred eCCCCeeeeeecCCCC----CcceEEEEecCCCEEEEEe-CCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEE
Q 001790 570 NESEGTIKRTYAGFRK----KSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (1012)
Q Consensus 570 d~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l 644 (1012)
.+.+++++..+.|... .--+...|+....+++.-. ..+.+.-||.++...+..+.. +|.+.+..+.-||.+.-+
T Consensus 333 Ei~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~p~F 411 (430)
T KOG0640|consen 333 EISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVEPAF 411 (430)
T ss_pred eecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCCCce
Confidence 9999999999987521 1123356777777877765 467899999999887776654 667789999999999999
Q ss_pred EEEECCCcEEEEEc
Q 001790 645 AVTTADNGFKILAN 658 (1012)
Q Consensus 645 ~~~~~dg~i~iwd~ 658 (1012)
.+++.|..+|+|--
T Consensus 412 mTcsdD~raRFWyr 425 (430)
T KOG0640|consen 412 MTCSDDFRARFWYR 425 (430)
T ss_pred eeecccceeeeeee
Confidence 99999999999964
No 66
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2e-29 Score=254.39 Aligned_cols=282 Identities=20% Similarity=0.283 Sum_probs=239.0
Q ss_pred CCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001790 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1012)
Q Consensus 343 h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 422 (1012)
..+.|++++|||...+=+|+.+ .-.|.||+..+...... +..-...|+++.|-.||++||
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG~Lla 84 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDGRLLA 84 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCCeEEE
Confidence 4458999999997764455544 46899999877655432 222456899999999999999
Q ss_pred EEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCCccCEEEEe
Q 001790 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1012)
Q Consensus 423 s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~v~~~~ 501 (1012)
.|+..|.|+|+|+++...++ .+.+|+.+|..+.|+|++.. .+++|++|+.+++|| .+......+.+|++.|.+.+
T Consensus 85 aGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~ 160 (487)
T KOG0310|consen 85 AGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGD 160 (487)
T ss_pred ccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEeec
Confidence 99999999999977755555 57899999999999998876 899999999999999 55555568999999999999
Q ss_pred ccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCC-eeeeee
Q 001790 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG-TIKRTY 580 (1012)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~-~~~~~~ 580 (1012)
|+|.. +.+++||+.||.|++||.+.......--.|+.+|.++.+-|.|..+++++ ...+++||+.+| +.+..+
T Consensus 161 ~~~~~-~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-----Gn~vkVWDl~~G~qll~~~ 234 (487)
T KOG0310|consen 161 ISPAN-DHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-----GNSVKVWDLTTGGQLLTSM 234 (487)
T ss_pred cccCC-CeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-----CCeEEEEEecCCceehhhh
Confidence 98764 47999999999999999999865555556888999999999999999997 788999999955 555555
Q ss_pred cCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEc
Q 001790 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1012)
Q Consensus 581 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~ 658 (1012)
..|++ .|+|+++..++..|++++-|+.+++||..+.+.+..+...+ +|.+++.+|++..++.|..+|.+.+-+.
T Consensus 235 ~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~---pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 235 FNHNK-TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPG---PVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred hcccc-eEEEEEeecCCceEeecccccceEEEEccceEEEEeeeccc---ceeeEEecCCCceEEEecccceeeeehh
Confidence 55766 99999999999999999999999999999999999998765 7999999999999999999999877543
No 67
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=2.4e-28 Score=295.14 Aligned_cols=270 Identities=15% Similarity=0.203 Sum_probs=214.5
Q ss_pred CCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEECCCeEEEEeecCC----Ccc
Q 001790 366 NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS----NDL 441 (1012)
Q Consensus 366 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~----~~~ 441 (1012)
+|.+++|+..+...... + ....+.+|.+.|.+++|+|+|++||+|+.|+.|+|||..+. ...
T Consensus 457 ~gl~~~~~~~~~~~~~~--~------------~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKAD--L------------KQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccceEEEEe--e------------ccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence 67788888765443211 0 01124569999999999999999999999999999997642 111
Q ss_pred e-eeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCCccCEEEEeccccCCceEEEEEecCCe
Q 001790 442 R-QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGK 519 (1012)
Q Consensus 442 ~-~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 519 (1012)
. ....+ .+...|.+++|++.... ++++++.||+|++|| .+++.+..+.+|.+.|++++|++. ++.+|++|+.||+
T Consensus 523 ~~~~~~~-~~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 523 HYPVVEL-ASRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS 599 (793)
T ss_pred ccceEEe-cccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence 1 11123 24567999999986433 799999999999999 788889999999999999999864 4579999999999
Q ss_pred EEEEEcCCCCceeeecCCCCcEEEEEEc-cCCCeEEEeeecCCCCCcEEEEeCCCCe-eeeeecCCCCCcceEEEEecCC
Q 001790 520 IKAWLYDTMGSRVDYDAPGHWCTTMLYS-ADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTYAGFRKKSNGVVQFDTTQ 597 (1012)
Q Consensus 520 i~~wd~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~~~~~~~~i~lwd~~~~~-~~~~~~~~~~~~v~~~~~s~~~ 597 (1012)
|++||++++.....+..+ ..+.++.|+ ++|.++++++ .|+.|++||++++. ....+.+|.. .|..+.|. ++
T Consensus 600 v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs----~dg~I~iwD~~~~~~~~~~~~~h~~-~V~~v~f~-~~ 672 (793)
T PLN00181 600 VKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGS----ADHKVYYYDLRNPKLPLCTMIGHSK-TVSYVRFV-DS 672 (793)
T ss_pred EEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEe----CCCeEEEEECCCCCccceEecCCCC-CEEEEEEe-CC
Confidence 999999988777666544 578899995 5789999988 59999999998765 4667777776 78999997 67
Q ss_pred CEEEEEeCCCcEEEEeCCCC------eeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCC
Q 001790 598 NHFLAVGEDSQIKFWDMDNV------NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1012)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~ 661 (1012)
..+++++.|+.|++||+..+ ..+..+.. +...+.+++|+|++.+|++|+.|+.|++|+....
T Consensus 673 ~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g--h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 673 STLVSSSTDNTLKLWDLSMSISGINETPLHSFMG--HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CEEEEEECCCEEEEEeCCCCccccCCcceEEEcC--CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 89999999999999999743 45555554 4447889999999999999999999999997544
No 68
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=8.5e-28 Score=217.13 Aligned_cols=311 Identities=18% Similarity=0.213 Sum_probs=240.6
Q ss_pred ccceEeecCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEE
Q 001790 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1012)
Q Consensus 335 ~~~~~~~~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 414 (1012)
...+.++.....|.+++|+|.|. +.|+|+...+.+|-....-..+.... +.....+...-+.-+.|.+.|+|.+|
T Consensus 23 f~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~h----ea~~~pp~v~~kr~khhkgsiyc~~w 97 (350)
T KOG0641|consen 23 FEAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHAH----EAAKQPPSVLCKRNKHHKGSIYCTAW 97 (350)
T ss_pred eEEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCccccc----ccccCCCeEEeeeccccCccEEEEEe
Confidence 45666777888999999999999 89999999999987654322221000 00000011122345679999999999
Q ss_pred ccCCCEEEEEECCCeEEEEeecC--CCcceeeeeeeccccCeEEEEEeCC---CCceEEEEEc-CCCcEEEEe-CCCcce
Q 001790 415 SPDGNYVGVAFTKHLIQLYSYAG--SNDLRQHSQIDAHVGAVNDLAFAYP---NKLLCVVTCG-DDKLIKVWE-LSGRKL 487 (1012)
Q Consensus 415 spdg~~las~~~d~~v~vwd~~~--~~~~~~~~~l~~h~~~v~~l~~s~~---~~~~~l~s~~-~d~~v~vwd-~~~~~~ 487 (1012)
||+|++||+|+.|.+|++..... .+....-.++.-|.+.|..++|..+ +.. .+++++ .|..|++-| ..|+..
T Consensus 98 s~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~~ 176 (350)
T KOG0641|consen 98 SPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQGF 176 (350)
T ss_pred cCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCcc
Confidence 99999999999999999976543 3333333357789999999999764 222 566655 466788888 899999
Q ss_pred eeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecC-------CCCcEEEEEEccCCCeEEEeeecC
Q 001790 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-------PGHWCTTMLYSADGSRLFSCGTSK 560 (1012)
Q Consensus 488 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1012)
+.+.+|++.|.++. +-++..+++|+.|.+|++||++-..+...+.. ....|.++++.|.|++|+++.
T Consensus 177 ~a~sghtghilaly---swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~--- 250 (350)
T KOG0641|consen 177 HALSGHTGHILALY---SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGH--- 250 (350)
T ss_pred eeecCCcccEEEEE---EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeecc---
Confidence 99999999999874 22557999999999999999988777665432 235799999999999999998
Q ss_pred CCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCC--eeEEEEecCCCCCCcceeEee
Q 001790 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV--NILTSTDAEGGLPNLPRLRFS 638 (1012)
Q Consensus 561 ~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s 638 (1012)
.|....+||++.++.++.|..|.. .|.++.|+|...++++++.|..|++-|+... ..+.......+...+..+.|+
T Consensus 251 -~dssc~lydirg~r~iq~f~phsa-dir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh 328 (350)
T KOG0641|consen 251 -ADSSCMLYDIRGGRMIQRFHPHSA-DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWH 328 (350)
T ss_pred -CCCceEEEEeeCCceeeeeCCCcc-ceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEec
Confidence 588999999999999999999987 8999999999999999999999999998642 112222222344567889999
Q ss_pred cCCCEEEEEECCCcEEEEEcc
Q 001790 639 KEGNLLAVTTADNGFKILANA 659 (1012)
Q Consensus 639 ~~g~~l~~~~~dg~i~iwd~~ 659 (1012)
|..-.+++.+.|.++.+|-+.
T Consensus 329 ~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 329 PQDFSFISSSADKTATLWALN 349 (350)
T ss_pred CccceeeeccCcceEEEeccC
Confidence 999999999999999999753
No 69
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=5.3e-29 Score=276.20 Aligned_cols=305 Identities=18% Similarity=0.267 Sum_probs=248.8
Q ss_pred CCCceEEEEEecCCCcEEEEec--CCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCE
Q 001790 343 QGSTVISMDFHPSHQTLLLVGS--SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1012)
Q Consensus 343 h~~~V~~~~~spdg~~llasg~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 420 (1012)
+...|.+++.+|||. .+|||+ .||.++||+...-- .....++.. .+.+.-....|.+.|.|+.|||||++
T Consensus 12 ~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl----~~~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVL----DEKEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred CCeeEEEEEecCCce-eEecCCccccccceeecccccc----chhhhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence 456799999999999 599999 89999999864311 011111111 22233456779999999999999999
Q ss_pred EEEEECCCeEEEEeecC----------C-----CcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCC
Q 001790 421 VGVAFTKHLIQLYSYAG----------S-----NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1012)
Q Consensus 421 las~~~d~~v~vwd~~~----------~-----~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~ 484 (1012)
||+|+.|+.|.||+... | +..+....+.+|...|..++|+|++. ++++++.|++|.+|| .+.
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence 99999999999999883 0 11234557889999999999999999 999999999999999 888
Q ss_pred cceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCC------CCcEEEEEEccCCCeEEEeee
Q 001790 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP------GHWCTTMLYSADGSRLFSCGT 558 (1012)
Q Consensus 485 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~ 558 (1012)
+.+..+.+|.+.|..+.|.| -|+++++-+.|++|++|+....+....+..+ ...+..+.|||||++|++...
T Consensus 162 ~~~~vl~~H~s~VKGvs~DP--~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSWDP--IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eeeeeeecccccccceEECC--ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 99999999999999999966 6689999999999999997765555544433 236788999999999999876
Q ss_pred cCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecC-----CC------------EEEEEeCCCcEEEEeCCCCeeEE
Q 001790 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT-----QN------------HFLAVGEDSQIKFWDMDNVNILT 621 (1012)
Q Consensus 559 ~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~------------~l~~~~~dg~i~iwd~~~~~~~~ 621 (1012)
-+.....+.|.+..+.+.-..+.||.. ++.+++|+|. .. .+++|+.|++|.||.....+++.
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 666677899999989999999999998 9999999872 11 56778899999999998777765
Q ss_pred EEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCC
Q 001790 622 STDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1012)
Q Consensus 622 ~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~ 661 (1012)
....-. ...|.+++|+|||..|++++.||+|.++.+...
T Consensus 319 vi~~lf-~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 319 VIHNLF-NKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhh-cCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 553322 237999999999999999999999999988753
No 70
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=1.1e-28 Score=240.67 Aligned_cols=289 Identities=19% Similarity=0.319 Sum_probs=239.9
Q ss_pred CCccceEeecCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEE
Q 001790 333 LPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1012)
Q Consensus 333 ~~~~~~~~~~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 412 (1012)
.++.....+.|.+.|.++... ++ .+.+|+.||.++|||.. |+... .+.||.++|.++
T Consensus 94 ~aP~pl~~~~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~-Gk~~~-------------------~~~Ght~~ik~v 150 (423)
T KOG0313|consen 94 TAPKPLQCFLHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLK-GKSIK-------------------TIVGHTGPIKSV 150 (423)
T ss_pred CCCCccccccchhhhhhhccc--Cc-eEEEeecCCeeEEEecC-CceEE-------------------EEecCCcceeee
Confidence 346677778899999999998 44 69999999999999975 55543 288999999988
Q ss_pred EEccCC---CEEEEEECCCeEEEEeecCCCcce-eeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CC----
Q 001790 413 AWSPDG---NYVGVAFTKHLIQLYSYAGSNDLR-QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS---- 483 (1012)
Q Consensus 413 ~~spdg---~~las~~~d~~v~vwd~~~~~~~~-~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~---- 483 (1012)
+|--.. ..+++++.|.++++|.++.++... ......||...|.+++..++|. .+++|+.|.+|++|+ ..
T Consensus 151 ~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~ 228 (423)
T KOG0313|consen 151 AWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEED 228 (423)
T ss_pred EEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCccc
Confidence 885433 359999999999999998876432 2223459999999999999999 899999999999998 21
Q ss_pred ---------------------CcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEE
Q 001790 484 ---------------------GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCT 542 (1012)
Q Consensus 484 ---------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~ 542 (1012)
+.++.++.||..+|.++.|.+ ...+++++.|.+|+.||+.+++....+.. +....
T Consensus 229 ~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~ 304 (423)
T KOG0313|consen 229 ELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLN 304 (423)
T ss_pred cccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeec-Cccee
Confidence 124567899999999999975 25899999999999999999888776654 44689
Q ss_pred EEEEccCCCeEEEeeecCCCCCcEEEEeCCCCe---eeeeecCCCCCcceEEEEecCC-CEEEEEeCCCcEEEEeCCCCe
Q 001790 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT---IKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVN 618 (1012)
Q Consensus 543 ~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~---~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~ 618 (1012)
++..+|..++|++++. |..+++||.+++. ....|.+|.. -|..+.|+|.. ..|++|+.|+++++||+++.+
T Consensus 305 ~i~~~~~~~Ll~~gss----dr~irl~DPR~~~gs~v~~s~~gH~n-wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 305 CISYSPLSKLLASGSS----DRHIRLWDPRTGDGSVVSQSLIGHKN-WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred EeecccccceeeecCC----CCceeecCCCCCCCceeEEeeecchh-hhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 9999999999999985 8999999998764 4567889987 89999999976 567789999999999999877
Q ss_pred -eEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEc
Q 001790 619 -ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1012)
Q Consensus 619 -~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~ 658 (1012)
++..+..+ ...|.++.|+. +..+++|+.|.+++|+.-
T Consensus 380 ~plydI~~h--~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 380 APLYDIAGH--NDKVLSVDWNE-GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred CcceeeccC--CceEEEEeccC-CceEEeccCcceEEEecc
Confidence 77777755 44899999974 568999999999999864
No 71
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=8.1e-30 Score=251.24 Aligned_cols=292 Identities=17% Similarity=0.227 Sum_probs=249.8
Q ss_pred CCCccceEeec-CCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceE
Q 001790 332 DLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS 410 (1012)
Q Consensus 332 ~~~~~~~~~~~-h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 410 (1012)
.+|......+. |.++|..+.|-++.. .|++|+.|..|++|++..++... ...+.|..++|+
T Consensus 162 ~lpS~~~~~ld~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~-----------------~~tLaGs~g~it 223 (459)
T KOG0288|consen 162 TLPSRALFVLDAHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSEL-----------------ISTLAGSLGNIT 223 (459)
T ss_pred ccchhhhhhhhccccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhh-----------------hhhhhccCCCcc
Confidence 44566666666 999999999999966 59999999999999998766221 134778889999
Q ss_pred EEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceee
Q 001790 411 RVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (1012)
Q Consensus 411 ~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~ 489 (1012)
++.|.++++.+++++.|+.+++|++...+... +|.+|++.|+++.|..... .+++|+.|.+|++|| .++.+.++
T Consensus 224 ~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~kt 298 (459)
T KOG0288|consen 224 SIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSKT 298 (459)
T ss_pred eeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheecc
Confidence 99999999999999999999999999876555 7899999999999998776 699999999999999 77777766
Q ss_pred ecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEE
Q 001790 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (1012)
Q Consensus 490 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lw 569 (1012)
+.. ...+..|+.. ...+++|-.|+.|++||.++.........++ .|+++..+++|..+++++ .|.++.+.
T Consensus 299 ~l~-~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsss----RDdtl~vi 368 (459)
T KOG0288|consen 299 VLP-GSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSS----RDDTLKVI 368 (459)
T ss_pred ccc-cccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeec----CCCceeee
Confidence 542 2335555542 3578899999999999999988888887776 899999999999999997 58999999
Q ss_pred eCCCCeeeeeecCCC---CCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEE
Q 001790 570 NESEGTIKRTYAGFR---KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAV 646 (1012)
Q Consensus 570 d~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~ 646 (1012)
|+++.+....+.... ....+.+.|||++.++++|+.||.|+||++.++++...+........|++++|+|.|..+++
T Consensus 369 DlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Lls 448 (459)
T KOG0288|consen 369 DLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLS 448 (459)
T ss_pred ecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhc
Confidence 999999888876432 22477899999999999999999999999999999999988776657999999999999999
Q ss_pred EECCCcEEEE
Q 001790 647 TTADNGFKIL 656 (1012)
Q Consensus 647 ~~~dg~i~iw 656 (1012)
++.++.+.+|
T Consensus 449 adk~~~v~lW 458 (459)
T KOG0288|consen 449 ADKQKAVTLW 458 (459)
T ss_pred ccCCcceEec
Confidence 9999999998
No 72
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=2.4e-28 Score=226.97 Aligned_cols=287 Identities=11% Similarity=0.122 Sum_probs=238.3
Q ss_pred eEeecCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC
Q 001790 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1012)
Q Consensus 338 ~~~~~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 417 (1012)
+...+|..+++-+.++.+|. ||.++++|.++.||-..+|+.+.+ +.||.+.|.|+..+-+
T Consensus 4 i~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~ 63 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWD 63 (327)
T ss_pred cccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCC
Confidence 34456999999999999999 899999999999999889998865 8899999999999999
Q ss_pred CCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEc-----CCCcEEEEe-C-------CC
Q 001790 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-----DDKLIKVWE-L-------SG 484 (1012)
Q Consensus 418 g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~-----~d~~v~vwd-~-------~~ 484 (1012)
.+++++|+.|.++++||+++|+++.. + .-..+|..+.|+.+|. +++.+. ..+.|.++| . ..
T Consensus 64 s~~liTGSAD~t~kLWDv~tGk~la~---~-k~~~~Vk~~~F~~~gn--~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ 137 (327)
T KOG0643|consen 64 SKHLITGSADQTAKLWDVETGKQLAT---W-KTNSPVKRVDFSFGGN--LILASTDKQMGYTCFVSVFDIRDDSSDIDSE 137 (327)
T ss_pred cceeeeccccceeEEEEcCCCcEEEE---e-ecCCeeEEEeeccCCc--EEEEEehhhcCcceEEEEEEccCChhhhccc
Confidence 99999999999999999999998873 3 3567899999999998 444333 235788998 4 34
Q ss_pred cceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCcee-eecCCCCcEEEEEEccCCCeEEEeeecCCCC
Q 001790 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1012)
Q Consensus 485 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 563 (1012)
.+...+..+...++.+.|.+. +++|++|.+||.|..||++++.... ....|...|+.+.+++|..++++++ .|
T Consensus 138 ep~~kI~t~~skit~a~Wg~l--~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s----~D 211 (327)
T KOG0643|consen 138 EPYLKIPTPDSKITSALWGPL--GETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGS----KD 211 (327)
T ss_pred CceEEecCCccceeeeeeccc--CCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecc----cC
Confidence 567788888899999999775 4799999999999999999975554 4577888999999999999999999 58
Q ss_pred CcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCc--EEEEeCCCCe------------eEEEEecCCCC
Q 001790 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ--IKFWDMDNVN------------ILTSTDAEGGL 629 (1012)
Q Consensus 564 ~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~--i~iwd~~~~~------------~~~~~~~~~~~ 629 (1012)
.+-++||..+-++++++.... ++++.+++|...+++.|+.... |.--+.+.++ .+... .+|.
T Consensus 212 ttakl~D~~tl~v~Kty~te~--PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrv--kGHF 287 (327)
T KOG0643|consen 212 TTAKLVDVRTLEVLKTYTTER--PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRV--KGHF 287 (327)
T ss_pred ccceeeeccceeeEEEeeecc--cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccc--cccc
Confidence 999999999999999998754 8999999999888888764322 2222222232 22333 3667
Q ss_pred CCcceeEeecCCCEEEEEECCCcEEEEEccC
Q 001790 630 PNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1012)
Q Consensus 630 ~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~ 660 (1012)
++|++++|+|+|+..++|+.||.||+.....
T Consensus 288 GPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 288 GPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 7999999999999999999999999986654
No 73
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=2.6e-28 Score=226.81 Aligned_cols=234 Identities=14% Similarity=0.226 Sum_probs=203.2
Q ss_pred eccCCCcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEE
Q 001790 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1012)
Q Consensus 401 ~~~~h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vw 480 (1012)
.+.||..+++.|.|+.+|.+|.+|+.|.++.||-..+|+.+. ++.||++.|+|++...+.+ .+++|+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 378999999999999999999999999999999998998777 7899999999999999999 89999999999999
Q ss_pred e-CCCcceeeecCCccCEEEEeccccCCceEEEEEec-----CCeEEEEEcC-------CCCceeeecCCCCcEEEEEEc
Q 001790 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-----DGKIKAWLYD-------TMGSRVDYDAPGHWCTTMLYS 547 (1012)
Q Consensus 481 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~~wd~~-------~~~~~~~~~~~~~~v~~~~~s 547 (1012)
| .+|+++..++ ...+|..+.|++. |.+++.+.. .+.|.++|++ ...+...+..+...++.+-|.
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~~--gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSFG--GNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeeccC--CcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 9 9999998887 5667999999774 455555543 3679999988 344566777788899999999
Q ss_pred cCCCeEEEeeecCCCCCcEEEEeCCCCee-eeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecC
Q 001790 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTI-KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (1012)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~i~lwd~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1012)
|-+++|++|. ++|.|..||+++|+. +..-..|.. .|+.+++++|..++++++.|.+-++||..+-+.++++...
T Consensus 157 ~l~~~ii~Gh----e~G~is~~da~~g~~~v~s~~~h~~-~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te 231 (327)
T KOG0643|consen 157 PLGETIIAGH----EDGSISIYDARTGKELVDSDEEHSS-KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE 231 (327)
T ss_pred ccCCEEEEec----CCCcEEEEEcccCceeeechhhhcc-ccccccccCCcceEEecccCccceeeeccceeeEEEeeec
Confidence 9999999998 699999999999854 445555655 8999999999999999999999999999999999988764
Q ss_pred CCCCCcceeEeecCCCEEEEEECC
Q 001790 627 GGLPNLPRLRFSKEGNLLAVTTAD 650 (1012)
Q Consensus 627 ~~~~~v~~v~~s~~g~~l~~~~~d 650 (1012)
. +|++.+++|-...++.|+..
T Consensus 232 ~---PvN~aaisP~~d~VilgGGq 252 (327)
T KOG0643|consen 232 R---PVNTAAISPLLDHVILGGGQ 252 (327)
T ss_pred c---cccceecccccceEEecCCc
Confidence 3 79999999987788777653
No 74
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=2.6e-29 Score=230.75 Aligned_cols=291 Identities=15% Similarity=0.278 Sum_probs=248.2
Q ss_pred eeeecCCCCcEEEEEEcc---CCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCC
Q 001790 531 RVDYDAPGHWCTTMLYSA---DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS 607 (1012)
Q Consensus 531 ~~~~~~~~~~v~~~~~s~---~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 607 (1012)
.....+|..+|..++||| +|-+|++++ .|+.-.+-+-.+|..+.+|.+|.+ .|...++..+....++++.|-
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~----kd~~pmlr~g~tgdwigtfeghkg-avw~~~l~~na~~aasaaadf 81 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISAS----KDGKPMLRNGDTGDWIGTFEGHKG-AVWSATLNKNATRAASAAADF 81 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEec----cCCCchhccCCCCCcEEeeeccCc-ceeeeecCchhhhhhhhcccc
Confidence 345567888999999985 888999988 477778888889999999999988 889899988888888899999
Q ss_pred cEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeecc
Q 001790 608 QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKV 687 (1012)
Q Consensus 608 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~ 687 (1012)
+-++||.-+|..+..+... | -|..++|+.|.++|++|+.+..+||||++........+
T Consensus 82 takvw~a~tgdelhsf~hk-h--ivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~------------------- 139 (334)
T KOG0278|consen 82 TAKVWDAVTGDELHSFEHK-H--IVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEI------------------- 139 (334)
T ss_pred hhhhhhhhhhhhhhhhhhh-h--eeeeEEecccchhhhccchHHHhhhhhccCCCCCchhh-------------------
Confidence 9999999999998888643 3 68999999999999999999999999987543222111
Q ss_pred ccccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCce
Q 001790 688 SASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKV 767 (1012)
Q Consensus 688 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i 767 (1012)
.+|.+.|
T Consensus 140 -------------------------------------------------------------------------~ghtg~I 146 (334)
T KOG0278|consen 140 -------------------------------------------------------------------------SGHTGGI 146 (334)
T ss_pred -------------------------------------------------------------------------cCCCCcc
Confidence 2288889
Q ss_pred EEEEEecCcceEEEeeccCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEEE
Q 001790 768 VRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVM 847 (1012)
Q Consensus 768 ~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 847 (1012)
..+.|....+.++++..|++||+||..+ |...... ....+|+++.+++||++|.
T Consensus 147 r~v~wc~eD~~iLSSadd~tVRLWD~rT----------------------gt~v~sL----~~~s~VtSlEvs~dG~ilT 200 (334)
T KOG0278|consen 147 RTVLWCHEDKCILSSADDKTVRLWDHRT----------------------GTEVQSL----EFNSPVTSLEVSQDGRILT 200 (334)
T ss_pred eeEEEeccCceEEeeccCCceEEEEecc----------------------CcEEEEE----ecCCCCcceeeccCCCEEE
Confidence 9999999999999999999999997644 3322221 1577899999999999999
Q ss_pred EEcCCcEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeEEe-cccCCCeEEEEEcCC
Q 001790 848 SATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL-KGHQKRITGLAFSTS 926 (1012)
Q Consensus 848 ~~sdg~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~~-~~h~~~V~~l~~spd 926 (1012)
++..+.|.+||..+..+++.+.-+ ..|.+..++| +...+++|++|..++.||..+|+.+..+ ++|-++|.||.|+||
T Consensus 201 ia~gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P-~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPd 278 (334)
T KOG0278|consen 201 IAYGSSVKFWDAKSFGLLKSYKMP-CNVESASLHP-KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPD 278 (334)
T ss_pred EecCceeEEeccccccceeeccCc-cccccccccC-CCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCC
Confidence 999999999999999998887644 4588899999 8889999999999999999999999886 899999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCc
Q 001790 927 LNILVSSGADAQLCVWSIDTWEK 949 (1012)
Q Consensus 927 g~~l~s~s~Dg~i~vwd~~~~~~ 949 (1012)
|...|+||+||+|++|.+.-++.
T Consensus 279 GE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 279 GELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred CceeeccCCCceEEEEEecCCCc
Confidence 99999999999999999877653
No 75
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1e-27 Score=222.14 Aligned_cols=274 Identities=15% Similarity=0.213 Sum_probs=234.7
Q ss_pred cCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc-CCCE
Q 001790 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNY 420 (1012)
Q Consensus 342 ~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~ 420 (1012)
+|...|.+++|+-+|+ .|++|+.|+++.+|++...+.... ....+|.+.|..++|+| ....
T Consensus 18 ~~~~~v~Sv~wn~~g~-~lasgs~dktv~v~n~e~~r~~~~-----------------~~~~gh~~svdql~w~~~~~d~ 79 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGT-KLASGSFDKTVSVWNLERDRFRKE-----------------LVYRGHTDSVDQLCWDPKHPDL 79 (313)
T ss_pred hhhhcceEEEEcccCc-eeeecccCCceEEEEecchhhhhh-----------------hcccCCCcchhhheeCCCCCcc
Confidence 4888999999999999 599999999999999987754432 23778999999999999 6789
Q ss_pred EEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCCccCEEE
Q 001790 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1012)
Q Consensus 421 las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~v~~ 499 (1012)
+++++.|.+|++||+..+++... .....+ =.-+.|+|+|. +++.++.|..|...| .+.+.....+ ..-.+..
T Consensus 80 ~atas~dk~ir~wd~r~~k~~~~---i~~~~e-ni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne 152 (313)
T KOG1407|consen 80 FATASGDKTIRIWDIRSGKCTAR---IETKGE-NINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNE 152 (313)
T ss_pred eEEecCCceEEEEEeccCcEEEE---eeccCc-ceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccceeee
Confidence 99999999999999999988764 332333 34578999999 899999999999999 6655554443 4456778
Q ss_pred EeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeee
Q 001790 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1012)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~ 579 (1012)
++|+.+ +.+++.....|.|.|......++...+..|...+.++.|+|+|+++++|+. |..+.+||+..--+++.
T Consensus 153 ~~w~~~--nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELiC~R~ 226 (313)
T KOG1407|consen 153 ISWNNS--NDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELICERC 226 (313)
T ss_pred eeecCC--CCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhhhhee
Confidence 888743 356666677899999999999999999999999999999999999999995 99999999999999999
Q ss_pred ecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECC
Q 001790 580 YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1012)
Q Consensus 580 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d 650 (1012)
+..+.- +|..+.|+.+|++|++|++|..|-|=+.++|..+..++..+ +...++|+|...+||.+.+|
T Consensus 227 isRldw-pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~---~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 227 ISRLDW-PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEG---PTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eccccC-ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccC---CceeEEecCCCceeeEEecC
Confidence 887765 89999999999999999999999999999999999998755 57899999999999988765
No 76
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1e-28 Score=234.92 Aligned_cols=251 Identities=16% Similarity=0.246 Sum_probs=215.0
Q ss_pred ccCCCcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceee-----eeeeccccCeEEEEEeCCCCceEEEEEcCCCc
Q 001790 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQH-----SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (1012)
Q Consensus 402 ~~~h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~-----~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~ 476 (1012)
--|..+-+.|..|||||+||++|+.||.|.|||..+|+..+.. ..+--+..+|.|+.|+.|.. .+++|+.||.
T Consensus 209 KFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE--MlAsGsqDGk 286 (508)
T KOG0275|consen 209 KFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE--MLASGSQDGK 286 (508)
T ss_pred ecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH--HhhccCcCCc
Confidence 3355677899999999999999999999999999998754321 12445788999999999999 8999999999
Q ss_pred EEEEe-CCCcceeeec-CCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEE
Q 001790 477 IKVWE-LSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (1012)
Q Consensus 477 v~vwd-~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 554 (1012)
|++|. .+|.+++.|. .|+..|+++.|+. |+..+++++.|.++++--+.+++....+.+|...|+...|++||..++
T Consensus 287 IKvWri~tG~ClRrFdrAHtkGvt~l~FSr--D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~ii 364 (508)
T KOG0275|consen 287 IKVWRIETGQCLRRFDRAHTKGVTCLSFSR--DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHII 364 (508)
T ss_pred EEEEEEecchHHHHhhhhhccCeeEEEEcc--CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEE
Confidence 99999 9999999997 8999999999965 567899999999999999999999999999999999999999999999
Q ss_pred EeeecCCCCCcEEEEeCCCCeeeeeecCC-CCCcceEEEEecC-CCEEEEEeCCCcEEEEeCCCCeeEEEEec-CCCCCC
Q 001790 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGF-RKKSNGVVQFDTT-QNHFLAVGEDSQIKFWDMDNVNILTSTDA-EGGLPN 631 (1012)
Q Consensus 555 ~~~~~~~~~~~i~lwd~~~~~~~~~~~~~-~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~ 631 (1012)
+++. |++|++|+..+.+++.+|... .+.+|..+-.-|. -..++++...++|+|.++. |+.+..+.. ....+.
T Consensus 365 saSs----DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGd 439 (508)
T KOG0275|consen 365 SASS----DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGD 439 (508)
T ss_pred EecC----CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCc
Confidence 9994 999999999999999988754 3345666666664 4688888899999999984 566666643 223335
Q ss_pred cceeEeecCCCEEEEEECCCcEEEEEccCC
Q 001790 632 LPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1012)
Q Consensus 632 v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~ 661 (1012)
..+...||.|.++...+.|+.++.|...+|
T Consensus 440 Fi~~~lSpkGewiYcigED~vlYCF~~~sG 469 (508)
T KOG0275|consen 440 FINAILSPKGEWIYCIGEDGVLYCFSVLSG 469 (508)
T ss_pred eEEEEecCCCcEEEEEccCcEEEEEEeecC
Confidence 677889999999999999999999988776
No 77
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.8e-27 Score=257.51 Aligned_cols=300 Identities=16% Similarity=0.208 Sum_probs=215.2
Q ss_pred cCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc---CC
Q 001790 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP---DG 418 (1012)
Q Consensus 342 ~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp---dg 418 (1012)
.|.+.|+||.||+||+ |||+|+.||.|+||.+...+.... +.......+.. +.+ .+.+..+.-++ .+
T Consensus 265 ah~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~------~~~~~~~~~~~--~~~-~s~~~p~~s~~~~~~~ 334 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRV------AEGDSSCMYFE--YNA-NSQIEPSTSSEEKISS 334 (712)
T ss_pred ccCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhcc------cccccchhhhh--hhh-ccccCccccccccccc
Confidence 5999999999999999 799999999999999876433110 00000000000 000 00011111111 01
Q ss_pred C--EEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCCcc
Q 001790 419 N--YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1012)
Q Consensus 419 ~--~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~ 495 (1012)
+ ..-.+.....+.+-+..-.-.-..+..+.||.+.|.++.||.++ +|++++.|++|++|+ ....++..|. |.+
T Consensus 335 ~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL~~F~-Hnd 410 (712)
T KOG0283|consen 335 RTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECLKVFS-HND 410 (712)
T ss_pred cccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCcceeeEEe-cCC
Confidence 1 11122222222221111111112333688999999999999876 699999999999999 7778888887 999
Q ss_pred CEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCe
Q 001790 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1012)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~ 575 (1012)
.|+|++|+|..| +++++|+-||.+|+|++...+...-.. -..-|++++|.|||+..++|+. +|.+++|+....+
T Consensus 411 fVTcVaFnPvDD-ryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~----~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 411 FVTCVAFNPVDD-RYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTF----NGYCRFYDTEGLK 484 (712)
T ss_pred eeEEEEecccCC-CcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEe----ccEEEEEEccCCe
Confidence 999999999855 799999999999999997654444333 3467999999999999999996 8999999998877
Q ss_pred eeeeecCCC-------CCcceEEEEecCC-CEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEE
Q 001790 576 IKRTYAGFR-------KKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (1012)
Q Consensus 576 ~~~~~~~~~-------~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~ 647 (1012)
....+.-+. ...|+.+.|.|.. ..+++.+.|..|+|+|.++..++..+........-....|+.||++|+++
T Consensus 485 ~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~ 564 (712)
T KOG0283|consen 485 LVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSA 564 (712)
T ss_pred EEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEe
Confidence 765543211 1258889998754 46888899999999999988888888765544455678999999999999
Q ss_pred ECCCcEEEEEccCC
Q 001790 648 TADNGFKILANAIG 661 (1012)
Q Consensus 648 ~~dg~i~iwd~~~~ 661 (1012)
++|..|++|+....
T Consensus 565 seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 565 SEDSWVYIWKNDSF 578 (712)
T ss_pred ecCceEEEEeCCCC
Confidence 99999999998543
No 78
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=2.4e-27 Score=262.00 Aligned_cols=294 Identities=17% Similarity=0.268 Sum_probs=251.7
Q ss_pred cccCCCCCccceEeecCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCC
Q 001790 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1012)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1012)
.|+....+......-.|...+.|..|+ ++ ++++|+.|++|++||..++..+.. .+.||.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~ 249 (537)
T KOG0274|consen 191 NWRKLFRRGYKVLLGTDDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHF 249 (537)
T ss_pred cccccccccceeecccCcchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCC
Confidence 444444444333333478899999999 44 589999999999999999887642 288999
Q ss_pred cceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCc
Q 001790 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (1012)
Q Consensus 407 ~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~ 485 (1012)
+.|.++++..-+.+|++|+.|.+++|||..+|++.. ++.+|...|.++...+. .+++|+.|.+|++|+ .++.
T Consensus 250 g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~ 322 (537)
T KOG0274|consen 250 GGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGA 322 (537)
T ss_pred CCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcc
Confidence 999999998878999999999999999999999888 68899999999987643 689999999999999 8899
Q ss_pred ceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCc
Q 001790 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1012)
Q Consensus 486 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 565 (1012)
.+..+.+|.++|.++..+ +.++++|+.|++|++||+.++++...+.+|...|.++.+.+. ..+++|+. |+.
T Consensus 323 ~l~l~~~h~~~V~~v~~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~ 393 (537)
T KOG0274|consen 323 CLNLLRGHTGPVNCVQLD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTT 393 (537)
T ss_pred eEEEeccccccEEEEEec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccc
Confidence 999999999999999874 469999999999999999999999999999999999988766 78999985 899
Q ss_pred EEEEeCCCC-eeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEE
Q 001790 566 LVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (1012)
Q Consensus 566 i~lwd~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l 644 (1012)
|++||+.+. +++.++.+|.. .+..+ ...++.+++++.||.|++||..+++++..+... +...|..+++. ...+
T Consensus 394 IkvWdl~~~~~c~~tl~~h~~-~v~~l--~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~i 467 (537)
T KOG0274|consen 394 IKVWDLRTKRKCIHTLQGHTS-LVSSL--LLRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEI 467 (537)
T ss_pred eEeecCCchhhhhhhhcCCcc-ccccc--ccccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceE
Confidence 999999999 99999999876 45433 345789999999999999999999999999874 33467777765 4678
Q ss_pred EEEECCCcEEEEEccCCce
Q 001790 645 AVTTADNGFKILANAIGLR 663 (1012)
Q Consensus 645 ~~~~~dg~i~iwd~~~~~~ 663 (1012)
++++.+|.+++||+.++..
T Consensus 468 l~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 468 LCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred EEEecCCeeEEEecccCch
Confidence 8999999999999998843
No 79
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=4.3e-27 Score=222.85 Aligned_cols=273 Identities=17% Similarity=0.264 Sum_probs=220.4
Q ss_pred CCCceEEEEEecCCCcEEEEecCCCeEEEEEccCC-ceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE
Q 001790 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR-DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1012)
Q Consensus 343 h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 421 (1012)
-.+.|.+++|||....+++.||-||+||+|++... .... +....|.++|.+++|+.||..+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~WsddgskV 87 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSKV 87 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCceE
Confidence 45699999999966658889999999999999873 3221 2356699999999999999999
Q ss_pred EEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCCccCEEEE
Q 001790 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1012)
Q Consensus 422 as~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~v~~~ 500 (1012)
++|+.|+.+++||+.+++.. .+..|.++|.++.|-+...+..|+|||.|++|+.|| ....++.++. -.++++++
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA 162 (347)
T ss_pred EeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence 99999999999999998544 377899999999999877666899999999999999 7777877776 56678887
Q ss_pred eccccCCceEEEEEecCCeEEEEEcCCCCceeee--cCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCC--ee
Q 001790 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY--DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG--TI 576 (1012)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~--~~ 576 (1012)
..-. .+++.+..++.|.+|+++........ ..-.-.+.+++..+|....+.|+. +|.+.+..+..+ +.
T Consensus 163 Dv~~----pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 163 DVLY----PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPKD 234 (347)
T ss_pred hccC----ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCccC
Confidence 6532 47888999999999999765443321 122347899999999888888885 888888887776 44
Q ss_pred eeeecCCCC--------CcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEE
Q 001790 577 KRTYAGFRK--------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1012)
Q Consensus 577 ~~~~~~~~~--------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~ 648 (1012)
-.+|+.|.. ..|+.++|+|....|+++|.||++.+||-.....+.....+ ..+|++..|+.+|.++|.+.
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~--~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH--PQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC--CCccceeEecCCCCEEEEEe
Confidence 455666652 23677999999999999999999999998877777666544 44899999999999988764
No 80
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=1.1e-26 Score=257.08 Aligned_cols=287 Identities=13% Similarity=0.104 Sum_probs=222.4
Q ss_pred CCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc-CCCEE
Q 001790 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYV 421 (1012)
Q Consensus 343 h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l 421 (1012)
|-..|.....++|+.. +++++.+..+..|+...+..+.. .......+.....+.+|.+.|.+++|+| ++++|
T Consensus 19 ~~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~~------~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L 91 (493)
T PTZ00421 19 HFLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVLK------HTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL 91 (493)
T ss_pred ceeccccccccCCCCC-cEeECCceEEEEEecCCceEEee------ccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence 3457778888889774 66677788888998765543211 0011111112235889999999999999 89999
Q ss_pred EEEECCCeEEEEeecCCCc----ceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCCccC
Q 001790 422 GVAFTKHLIQLYSYAGSND----LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (1012)
Q Consensus 422 as~~~d~~v~vwd~~~~~~----~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~ 496 (1012)
|+|+.|++|++||+.++.. ......+.+|...|.+++|+|++.. +|++|+.|++|++|| .+++.+..+.+|...
T Consensus 92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~ 170 (493)
T PTZ00421 92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170 (493)
T ss_pred EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence 9999999999999986532 1223468899999999999998644 799999999999999 888888999999999
Q ss_pred EEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCc-EEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCe
Q 001790 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHW-CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1012)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~ 575 (1012)
|.+++|++ +|.+|++++.|+.|++||++++.....+..|.+. ...+.|.+++..+++++.+...++.|++||+++..
T Consensus 171 V~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 171 ITSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred eEEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 99999977 5689999999999999999998887777777653 45778999988888877555568999999998754
Q ss_pred -eeeeecCCCCCcceEEEEecCCCEEEEEe-CCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecC
Q 001790 576 -IKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1012)
Q Consensus 576 -~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 640 (1012)
.......+....+....|+++++.+++++ .||.|++||+.+++.+...... ...++..++|.|.
T Consensus 249 ~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~-s~~~~~g~~~~pk 314 (493)
T PTZ00421 249 SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS-SVEPHKGLCMMPK 314 (493)
T ss_pred CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc-CCCCCcceEeccc
Confidence 33333334333556678899999999987 5999999999999887765543 2336788888885
No 81
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1.6e-27 Score=225.77 Aligned_cols=292 Identities=17% Similarity=0.248 Sum_probs=233.7
Q ss_pred eccCCCcceEEEEEccCCCEEEEEECCCeEEEEeecC------------CC---cceeeeeeeccccCeEEEEEeCCCCc
Q 001790 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG------------SN---DLRQHSQIDAHVGAVNDLAFAYPNKL 465 (1012)
Q Consensus 401 ~~~~h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~------------~~---~~~~~~~l~~h~~~v~~l~~s~~~~~ 465 (1012)
.+..|.+++.+.+|||||.++|+|+.|..|+|.|++. |. .--.+.++..|...|+++.|+|...
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~- 185 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET- 185 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh-
Confidence 4677999999999999999999999999999999871 11 1123446778999999999999999
Q ss_pred eEEEEEcCCCcEEEEe-CCCcceeee--cCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeee---cCCCC
Q 001790 466 LCVVTCGDDKLIKVWE-LSGRKLFNF--EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY---DAPGH 539 (1012)
Q Consensus 466 ~~l~s~~~d~~v~vwd-~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~---~~~~~ 539 (1012)
.|++|+.|++|+++| .+....+.+ .....+|.+++|+|. |.+|+.|....++++||+++.++-..- ..|.+
T Consensus 186 -ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPs--GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ 262 (430)
T KOG0640|consen 186 -ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPS--GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG 262 (430)
T ss_pred -eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCC--CceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence 899999999999999 333222222 234568999999985 479999999999999999998776643 34667
Q ss_pred cEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecC-CCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCe
Q 001790 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG-FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1012)
Q Consensus 540 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1012)
.|+++.+++.|+..++++ .||.|++||--+++++.++.. |.+..|.+..|..+++++++.|.|..+++|.+.+++
T Consensus 263 ai~~V~Ys~t~~lYvTaS----kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 263 AITQVRYSSTGSLYVTAS----KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred ceeEEEecCCccEEEEec----cCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence 999999999999999998 599999999999999998874 555668899999999999999999999999999999
Q ss_pred eEEEEecCCCCC---CcceeEeecCCCEEEEEEC-CCcEEEEEccCCceeeecccCCccccccCccceeeeccccccccc
Q 001790 619 ILTSTDAEGGLP---NLPRLRFSKEGNLLAVTTA-DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVS 694 (1012)
Q Consensus 619 ~~~~~~~~~~~~---~v~~v~~s~~g~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~ 694 (1012)
.+..+...+..+ --+...|+....+++.-.. .+.+.-||.++.
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta--------------------------------- 385 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA--------------------------------- 385 (430)
T ss_pred eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch---------------------------------
Confidence 999987654222 1245566666666655443 456667776554
Q ss_pred cCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEec
Q 001790 695 SGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTN 774 (1012)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 774 (1012)
..+.+|.+ +|.+.+..+.-+|
T Consensus 386 -----------------------------------------dr~~l~sl------------------gHn~a~R~i~HSP 406 (430)
T KOG0640|consen 386 -----------------------------------------DRVALLSL------------------GHNGAVRWIVHSP 406 (430)
T ss_pred -----------------------------------------hhhhhccc------------------CCCCCceEEEeCC
Confidence 22233333 2889999999999
Q ss_pred CcceEEEeeccCeeEeee
Q 001790 775 SAVGLLALGSNGVQKLWK 792 (1012)
Q Consensus 775 ~g~~l~~~~~dg~i~~w~ 792 (1012)
.+..+++++.|-.+++|-
T Consensus 407 ~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 407 VEPAFMTCSDDFRARFWY 424 (430)
T ss_pred CCCceeeecccceeeeee
Confidence 999999999999999993
No 82
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.2e-27 Score=220.67 Aligned_cols=283 Identities=18% Similarity=0.237 Sum_probs=225.4
Q ss_pred EEEEEecC--CCcEEEEec-----CCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc-CCC
Q 001790 348 ISMDFHPS--HQTLLLVGS-----SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGN 419 (1012)
Q Consensus 348 ~~~~~spd--g~~llasg~-----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~ 419 (1012)
.++.|||- ++..+|++. ..|.+.|-++..++.+.. +. --.-.+.+..++||+ ...
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~---------------s~d~~D~LfdV~Wse~~e~ 74 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQ---------------SYDTEDGLFDVAWSENHEN 74 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EE---------------eeecccceeEeeecCCCcc
Confidence 57888984 442233321 367899999875554422 11 111456899999999 456
Q ss_pred EEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCCccCEE
Q 001790 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (1012)
Q Consensus 420 ~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~v~ 498 (1012)
.+++++.||++++||..- .-..+..++.|...|.++.|++..++ .++++|.|++|++|+ ..++.++++.||...|.
T Consensus 75 ~~~~a~GDGSLrl~d~~~--~s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 75 QVIAASGDGSLRLFDLTM--PSKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY 151 (311)
T ss_pred eEEEEecCceEEEeccCC--CCcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence 788999999999999543 33344568899999999999998776 677789999999999 88899999999999999
Q ss_pred EEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCC-eEEEeeecCCCCCcEEEEeCCCC-ee
Q 001790 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS-RLFSCGTSKDGDSFLVEWNESEG-TI 576 (1012)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~i~lwd~~~~-~~ 576 (1012)
...|+|.. ..++++++.|+++++||++.......+..|...+.++.|+.-.. .+++++ .|+.|+.||++.- .+
T Consensus 152 ~a~~sp~~-~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~----vd~~vr~wDir~~r~p 226 (311)
T KOG0277|consen 152 QAAFSPHI-PNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGG----VDNLVRGWDIRNLRTP 226 (311)
T ss_pred EEecCCCC-CCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecC----CCceEEEEehhhcccc
Confidence 99999874 57999999999999999999888888999999999999998555 455555 5999999999874 46
Q ss_pred eeeecCCCCCcceEEEEecCC-CEEEEEeCCCcEEEEeCCCCe-eEEEEecCCCCCCcceeEeec-CCCEEEEEECCCcE
Q 001790 577 KRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVN-ILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGF 653 (1012)
Q Consensus 577 ~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~v~~s~-~g~~l~~~~~dg~i 653 (1012)
+..+.+|.- .|..+.|||.. ..|++++.|-+++|||...+. .+.+...| ..-+..+.||+ ++.++|+++.|+.+
T Consensus 227 l~eL~gh~~-AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H--tEFv~g~Dws~~~~~~vAs~gWDe~l 303 (311)
T KOG0277|consen 227 LFELNGHGL-AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH--TEFVCGLDWSLFDPGQVASTGWDELL 303 (311)
T ss_pred ceeecCCce-EEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc--ceEEeccccccccCceeeecccccce
Confidence 777777765 89999999965 678889999999999988543 44444443 33688899998 78899999999999
Q ss_pred EEEEc
Q 001790 654 KILAN 658 (1012)
Q Consensus 654 ~iwd~ 658 (1012)
+||+.
T Consensus 304 ~Vw~p 308 (311)
T KOG0277|consen 304 YVWNP 308 (311)
T ss_pred eeecc
Confidence 99984
No 83
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=5.7e-27 Score=228.82 Aligned_cols=282 Identities=19% Similarity=0.324 Sum_probs=234.5
Q ss_pred ccccCeEEEEEeCCCCceEEEEEcCCCcEEEEeCCCcceeeecCCccCEEEEeccccC-CceEEEEEecCCeEEEEEcCC
Q 001790 449 AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKE-NIQFIFSTAIDGKIKAWLYDT 527 (1012)
Q Consensus 449 ~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~l~s~~~dg~i~~wd~~~ 527 (1012)
-|...|.++... ++ .+++|+.||.+++||..|+.+..+.||.++|.+++|.... ....+++++.|.++++|.++.
T Consensus 103 ~hdDWVSsv~~~--~~--~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SK--WILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred cchhhhhhhccc--Cc--eEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 488888888877 45 8999999999999999999999999999999988875433 224699999999999999887
Q ss_pred CCcee----eecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCC-------------------------CCeeee
Q 001790 528 MGSRV----DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-------------------------EGTIKR 578 (1012)
Q Consensus 528 ~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~-------------------------~~~~~~ 578 (1012)
+.... ...+|...|.++...++|..+++++. |..|.+|+.. ++.++.
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~----D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v 254 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSW----DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV 254 (423)
T ss_pred chhhhhHHhHhcccccceeEEEecCCCCeEEeecc----cceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence 65443 33488999999999999999999996 9999999932 234566
Q ss_pred eecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEc
Q 001790 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1012)
Q Consensus 579 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~ 658 (1012)
++.+|.. +|..+.|++ ...+++++.|.+|+.||+.++..+..+.... .++++..+|..++|++|+.|..+++||.
T Consensus 255 tl~GHt~-~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k---sl~~i~~~~~~~Ll~~gssdr~irl~DP 329 (423)
T KOG0313|consen 255 TLEGHTE-PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK---SLNCISYSPLSKLLASGSSDRHIRLWDP 329 (423)
T ss_pred Eeccccc-ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc---ceeEeecccccceeeecCCCCceeecCC
Confidence 7788887 899999988 6789999999999999999999988886543 6899999999999999999999999998
Q ss_pred cCCceeeecccCCccccccCccceeeeccccccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCC
Q 001790 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKP 738 (1012)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 738 (1012)
+++..
T Consensus 330 R~~~g--------------------------------------------------------------------------- 334 (423)
T KOG0313|consen 330 RTGDG--------------------------------------------------------------------------- 334 (423)
T ss_pred CCCCC---------------------------------------------------------------------------
Confidence 76410
Q ss_pred CCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeeccCeeEeeeccccccCCCCCccccccceeeccCCC
Q 001790 739 KPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSG 818 (1012)
Q Consensus 739 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~ 818 (1012)
.+..
T Consensus 335 ---------------------------s~v~------------------------------------------------- 338 (423)
T KOG0313|consen 335 ---------------------------SVVS------------------------------------------------- 338 (423)
T ss_pred ---------------------------ceeE-------------------------------------------------
Confidence 0000
Q ss_pred ceeeecccCCCCCCCEeEEEEeeCCC-EEEEEc-CCcEEEEEcCCCe-EEEEEcCCCCCeeEEEEecCCCcEEEEEeCCC
Q 001790 819 LLMANDVAGVNLEEAVPCIALSKNDS-YVMSAT-GGKISLFNMMTFK-VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895 (1012)
Q Consensus 819 ~~~~~~~~~~~~~~~v~~~~~s~dg~-~la~~s-dg~i~lwd~~~~~-~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg 895 (1012)
..+.+ |.+.|.++.++|... .|++++ |+++++||+++.+ .+..+.+|.+.|.++.|. ++.++++|+.|.
T Consensus 339 ----~s~~g--H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~--~~~~IvSGGaD~ 410 (423)
T KOG0313|consen 339 ----QSLIG--HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN--EGGLIVSGGADN 410 (423)
T ss_pred ----Eeeec--chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc--CCceEEeccCcc
Confidence 01222 788888899998665 456777 9999999999887 889999999999999998 467999999999
Q ss_pred eEEEEEc
Q 001790 896 TIHIYNV 902 (1012)
Q Consensus 896 ~v~iwd~ 902 (1012)
+|+|+..
T Consensus 411 ~l~i~~~ 417 (423)
T KOG0313|consen 411 KLRIFKG 417 (423)
T ss_pred eEEEecc
Confidence 9999864
No 84
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.8e-26 Score=217.05 Aligned_cols=281 Identities=15% Similarity=0.237 Sum_probs=229.0
Q ss_pred CCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001790 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1012)
Q Consensus 343 h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 422 (1012)
-.+.|+++.|+++|. ++++++.|.+++|||..+|+.+.+ +..+.-.|..++|......++
T Consensus 13 ~~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~~~i 72 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSNTVI 72 (311)
T ss_pred CCCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCceEE
Confidence 366999999999999 577788899999999999988754 444556788899988777777
Q ss_pred EEEC--CCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCCccCEEE
Q 001790 423 VAFT--KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1012)
Q Consensus 423 s~~~--d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~v~~ 499 (1012)
.++. |.+|+.-++.+.+.++ .+.||...|.+++.+|-+. .+++++.|++|++|| ...++...+.....++
T Consensus 73 ~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi-- 145 (311)
T KOG1446|consen 73 HSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI-- 145 (311)
T ss_pred EccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCcc--
Confidence 7776 8899999999998888 6889999999999999998 899999999999999 6566665554443344
Q ss_pred EeccccCCceEEEEEecCCeEEEEEcCCCC--ceeeec---CCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCC
Q 001790 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYD---APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1012)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~--~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~ 574 (1012)
++| ++.|-++|++...+.|++||++... +-..+. ......+.+.|||||++++.+. +.+.+++.|.-+|
T Consensus 146 ~Af--Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT----~~s~~~~lDAf~G 219 (311)
T KOG1446|consen 146 AAF--DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST----NASFIYLLDAFDG 219 (311)
T ss_pred eeE--CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe----CCCcEEEEEccCC
Confidence 355 4467788888887899999998753 222333 3355889999999999999987 5889999999999
Q ss_pred eeeeeecCCCCCc--ceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCc
Q 001790 575 TIKRTYAGFRKKS--NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (1012)
Q Consensus 575 ~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~ 652 (1012)
....++.++.... ....+|+||++++++|+.||+|.+|+++++..+..+... +..++.++.|+|.-.++++++ ..
T Consensus 220 ~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa~--s~ 296 (311)
T KOG1446|consen 220 TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSAS--SN 296 (311)
T ss_pred cEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeecC--ce
Confidence 9999998776522 245789999999999999999999999999999998875 345889999999877777765 46
Q ss_pred EEEEEcc
Q 001790 653 FKILANA 659 (1012)
Q Consensus 653 i~iwd~~ 659 (1012)
+.+|-..
T Consensus 297 l~fw~p~ 303 (311)
T KOG1446|consen 297 LVFWLPD 303 (311)
T ss_pred EEEEecc
Confidence 7777543
No 85
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=6.6e-27 Score=236.69 Aligned_cols=301 Identities=18% Similarity=0.260 Sum_probs=231.4
Q ss_pred CccceEeec-CCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEE
Q 001790 334 PRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1012)
Q Consensus 334 ~~~~~~~~~-h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 412 (1012)
|......+. |+..|+++++.|.|.+ +++|+.|.+|++||+.....-. +.|+. +...-...|.++
T Consensus 156 P~shEi~l~hgtk~Vsal~~Dp~GaR-~~sGs~Dy~v~~wDf~gMdas~-~~fr~-------------l~P~E~h~i~sl 220 (641)
T KOG0772|consen 156 PGSHEIQLKHGTKIVSALAVDPSGAR-FVSGSLDYTVKFWDFQGMDASM-RSFRQ-------------LQPCETHQINSL 220 (641)
T ss_pred CccceEeccCCceEEEEeeecCCCce-eeeccccceEEEEecccccccc-hhhhc-------------cCccccccccee
Confidence 344455555 6789999999999995 9999999999999997543221 12221 122234589999
Q ss_pred EEccCCCEEEEEECCCeEEEEeecCCCc---------ceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-C
Q 001790 413 AWSPDGNYVGVAFTKHLIQLYSYAGSND---------LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (1012)
Q Consensus 413 ~~spdg~~las~~~d~~v~vwd~~~~~~---------~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~ 482 (1012)
+||+.|..|++.+.....+|+|-+.-+. ++.....+||...++|.+|+|+.+. .|+|++.||++++|| .
T Consensus 221 ~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRiWdv~ 299 (641)
T KOG0772|consen 221 QYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRIWDVN 299 (641)
T ss_pred eecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEEEecC
Confidence 9999999999988888899999765432 2333446799999999999999887 799999999999999 3
Q ss_pred CC-cceeeec-----CCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCcee---eecCCCC--cEEEEEEccCCC
Q 001790 483 SG-RKLFNFE-----GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV---DYDAPGH--WCTTMLYSADGS 551 (1012)
Q Consensus 483 ~~-~~~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~---~~~~~~~--~v~~~~~s~~~~ 551 (1012)
+. +.+..++ +..-+++.++|++ +|.+|++|+.||.|.+|+........ .-..|.. .|++++||+||+
T Consensus 300 ~~k~q~qVik~k~~~g~Rv~~tsC~~nr--dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~ 377 (641)
T KOG0772|consen 300 NTKSQLQVIKTKPAGGKRVPVTSCAWNR--DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN 377 (641)
T ss_pred CchhheeEEeeccCCCcccCceeeecCC--CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc
Confidence 32 3333332 3445678888866 67899999999999999975533322 2344544 899999999999
Q ss_pred eEEEeeecCCCCCcEEEEeCCCC-eeeeeecCCCC-CcceEEEEecCCCEEEEEe------CCCcEEEEeCCCCeeEEEE
Q 001790 552 RLFSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRK-KSNGVVQFDTTQNHFLAVG------EDSQIKFWDMDNVNILTST 623 (1012)
Q Consensus 552 ~l~~~~~~~~~~~~i~lwd~~~~-~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~ 623 (1012)
+|++-+ .|+++++||++.. +++....+... ..-+.++|||+.+.|++|+ ..|.+++||..+.+.+..+
T Consensus 378 ~LlSRg----~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki 453 (641)
T KOG0772|consen 378 YLLSRG----FDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI 453 (641)
T ss_pred hhhhcc----CCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEe
Confidence 999988 5999999999874 45555444322 2356699999999999986 3578999999999999999
Q ss_pred ecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEc
Q 001790 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1012)
Q Consensus 624 ~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~ 658 (1012)
..... .|..+.|+|.-+.+.+|+.||++++|--
T Consensus 454 ~i~~a--Svv~~~WhpkLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 454 DISTA--SVVRCLWHPKLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred cCCCc--eEEEEeecchhhheeeecCCCceEEEEC
Confidence 87643 7899999999999999999999998743
No 86
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.9e-26 Score=243.92 Aligned_cols=278 Identities=15% Similarity=0.227 Sum_probs=235.3
Q ss_pred eEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEEC
Q 001790 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT 426 (1012)
Q Consensus 347 V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~ 426 (1012)
.+-+.||..+ +||+|. ...|.+|+..+++.... ..-+...|+++.|+++|.+||+|..
T Consensus 180 ~nlldWss~n--~laVal-g~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~ 237 (484)
T KOG0305|consen 180 LNLLDWSSAN--VLAVAL-GQSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTS 237 (484)
T ss_pred hhHhhcccCC--eEEEEe-cceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeec
Confidence 3446788544 678875 56899999998875421 2224789999999999999999999
Q ss_pred CCeEEEEeecCCCcceeeeeeec-cccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCccee-eecCCccCEEEEecc
Q 001790 427 KHLIQLYSYAGSNDLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF-NFEGHEAPVYSICPH 503 (1012)
Q Consensus 427 d~~v~vwd~~~~~~~~~~~~l~~-h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~-~~~~h~~~v~~~~~~ 503 (1012)
+|.|.|||..+.+.++ ++.+ |...|-+++|. +. .+.+|+.|+.|..+| ...+... ++.+|...|..+.|+
T Consensus 238 ~g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws 310 (484)
T KOG0305|consen 238 DGTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS 310 (484)
T ss_pred CCeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC
Confidence 9999999999887776 5667 99999999998 44 799999999999999 5554443 488999999999997
Q ss_pred ccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccC-CCeEEEeeecCCCCCcEEEEeCCCCeeeeeecC
Q 001790 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD-GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG 582 (1012)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~ 582 (1012)
+ |+.++++|+.|+.+.|||.........+..|...|.+++|+|- ...||+|+. ..|+.|++||..++..+.....
T Consensus 311 ~--d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vdt 386 (484)
T KOG0305|consen 311 P--DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVDT 386 (484)
T ss_pred C--CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEeccccc
Confidence 6 6689999999999999999888899999999999999999994 456666653 4699999999999999888765
Q ss_pred CCCCcceEEEEecCCCEEEEE--eCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccC
Q 001790 583 FRKKSNGVVQFDTTQNHFLAV--GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1012)
Q Consensus 583 ~~~~~v~~~~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~ 660 (1012)
. ..|..+.|++..+.|+++ ..++.|.||+..+.+.+..+..| ...|..++++|||..+++|+.|.++++|++-+
T Consensus 387 g--sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH--~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 387 G--SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGH--TSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred C--CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCC--cceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 4 369999999999877774 46789999999998888888755 45899999999999999999999999999866
Q ss_pred C
Q 001790 661 G 661 (1012)
Q Consensus 661 ~ 661 (1012)
.
T Consensus 463 ~ 463 (484)
T KOG0305|consen 463 E 463 (484)
T ss_pred C
Confidence 3
No 87
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=3.9e-26 Score=228.90 Aligned_cols=293 Identities=16% Similarity=0.232 Sum_probs=233.5
Q ss_pred cCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccc----cccCccccceeccCCCcceEEEEEccC
Q 001790 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDM----AACSLPFQASIFKDVPISVSRVAWSPD 417 (1012)
Q Consensus 342 ~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~h~~~V~~v~~spd 417 (1012)
.|.-+|.||+++||++ +.++++.+|+|.=|++.+|+.... +|.- +.-..+.+... ++|...|.+++.|+|
T Consensus 140 ~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~D 213 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTLAVSSD 213 (479)
T ss_pred cccCcceEEEeecccc-ceeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEEEEcCC
Confidence 3889999999999999 699999999999999999885421 1110 10111222222 489999999999999
Q ss_pred CCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCCccC
Q 001790 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (1012)
Q Consensus 418 g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~ 496 (1012)
|+|||+|+.|..|.||+.++.+.++ .+.+|.+.|.+++|-.... .+++++.|++|++|+ ..-..+.++.||++.
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetlyGHqd~ 288 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLYGHQDG 288 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHhCCccc
Confidence 9999999999999999999998777 5889999999999987666 689999999999999 777788999999999
Q ss_pred EEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCee
Q 001790 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (1012)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~ 576 (1012)
|.++..... +..+-+|+.|+++++|++ .......+.++.+.+.|++|-.+. .+++|+ .+|.|.+|++...++
T Consensus 289 v~~IdaL~r--eR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~~-HfvsGS----dnG~IaLWs~~KKkp 360 (479)
T KOG0299|consen 289 VLGIDALSR--ERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFINDE-HFVSGS----DNGSIALWSLLKKKP 360 (479)
T ss_pred eeeechhcc--cceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEeccc-ceeecc----CCceEEEeeecccCc
Confidence 999976543 345556669999999999 445666777888899999997665 566777 499999999999888
Q ss_pred eeeecCCCC-----------CcceEEEEecCCCEEEEEeCCCcEEEEeCCCC----eeEEEEecCCCCCCcceeEeecCC
Q 001790 577 KRTYAGFRK-----------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV----NILTSTDAEGGLPNLPRLRFSKEG 641 (1012)
Q Consensus 577 ~~~~~~~~~-----------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~v~~s~~g 641 (1012)
+.+....+. ..|++++..|..+++++|+.+|.|++|-+..+ +++..+...+ -|++++|+++|
T Consensus 361 lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~G---fVNsl~f~~sg 437 (479)
T KOG0299|consen 361 LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVG---FVNSLAFSNSG 437 (479)
T ss_pred eeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccccc---EEEEEEEccCC
Confidence 876653221 15778999999999999999999999998877 4455555433 68999999999
Q ss_pred CEEEEE-ECCCcEEEE
Q 001790 642 NLLAVT-TADNGFKIL 656 (1012)
Q Consensus 642 ~~l~~~-~~dg~i~iw 656 (1012)
+.+++| +....+--|
T Consensus 438 k~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 438 KRIVAGIGKEHRLGRW 453 (479)
T ss_pred CEEEEeccccccccee
Confidence 966665 334444444
No 88
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=5.1e-26 Score=211.00 Aligned_cols=275 Identities=12% Similarity=0.199 Sum_probs=228.5
Q ss_pred eeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeec-CCCEEEEEECCCcEEEE
Q 001790 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKIL 656 (1012)
Q Consensus 578 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~g~~l~~~~~dg~i~iw 656 (1012)
+.+.+|.. .+.+++|+-+|..+++|+.|+++.+|++...+........+|...|-.++|+| ....+++++.|.+|++|
T Consensus 14 r~~~~~~~-~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQ-KVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhh-cceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 44556655 78999999999999999999999999999988888888888888899999998 56789999999999999
Q ss_pred EccCCceeeecccCCccccccCccceeeeccccccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccC
Q 001790 657 ANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTD 736 (1012)
Q Consensus 657 d~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 736 (1012)
|...++......
T Consensus 93 d~r~~k~~~~i~-------------------------------------------------------------------- 104 (313)
T KOG1407|consen 93 DIRSGKCTARIE-------------------------------------------------------------------- 104 (313)
T ss_pred EeccCcEEEEee--------------------------------------------------------------------
Confidence 998874332211
Q ss_pred CCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeeccCeeEeeeccccccCCCCCccccccceeeccC
Q 001790 737 KPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPS 816 (1012)
Q Consensus 737 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~ 816 (1012)
....-.-+.++|+|.++++++.|..|...|..+...
T Consensus 105 --------------------------~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~------------------ 140 (313)
T KOG1407|consen 105 --------------------------TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKI------------------ 140 (313)
T ss_pred --------------------------ccCcceEEEEcCCCCEEEEecCcccEEEEEecccce------------------
Confidence 112224568899999999999998888877543221
Q ss_pred CCceeeecccCCCCCCCEeEEEEeeCCCEEEEEc-CCcEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEEeCCC
Q 001790 817 SGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895 (1012)
Q Consensus 817 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg 895 (1012)
+. .......+..++|+-++.+++... .|.|.|......+.+..+..|.....|+.|+| +|+++|+|+.|.
T Consensus 141 ----~~----~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p-~GryfA~GsADA 211 (313)
T KOG1407|consen 141 ----VN----EEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDP-DGRYFATGSADA 211 (313)
T ss_pred ----ee----hhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECC-CCceEeeccccc
Confidence 11 111455677788887777665555 79999999999999999999999999999999 999999999999
Q ss_pred eEEEEEccCCeEeEEecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCccccEEEecCCCCCCCCceEEEEcCCC
Q 001790 896 TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQ 975 (1012)
Q Consensus 896 ~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~ 975 (1012)
.+.+||++.--+++.+..+.-+|+.++||.||++||++|+|..|-|=++++|..+..+... ++-..++|.|..
T Consensus 212 lvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~-------~~t~tVAWHPk~ 284 (313)
T KOG1407|consen 212 LVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCE-------GPTFTVAWHPKR 284 (313)
T ss_pred eeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeecc-------CCceeEEecCCC
Confidence 9999999999999999999999999999999999999999999999999999976544333 666899999999
Q ss_pred CEEEEE
Q 001790 976 VRMLVV 981 (1012)
Q Consensus 976 ~~l~~~ 981 (1012)
.+||.+
T Consensus 285 ~LLAyA 290 (313)
T KOG1407|consen 285 PLLAYA 290 (313)
T ss_pred ceeeEE
Confidence 999986
No 89
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3e-26 Score=242.40 Aligned_cols=268 Identities=18% Similarity=0.297 Sum_probs=227.5
Q ss_pred ccccCCCcc--cccCCCCCccceEeecCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCc
Q 001790 318 VTYSSSRHQ--TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSL 395 (1012)
Q Consensus 318 ~~~~~~~~~--~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 395 (1012)
+...+.+.. +|+-..-+...+..++ ...|+++.|+++|+ +||+|..+|.|.|||..+.+.+..
T Consensus 190 ~laValg~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~~k~~~~------------- 254 (484)
T KOG0305|consen 190 VLAVALGQSVYLWSASSGSVTELCSFG-EELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKEQKKTRT------------- 254 (484)
T ss_pred eEEEEecceEEEEecCCCceEEeEecC-CCceEEEEECCCCC-EEEEeecCCeEEEEehhhcccccc-------------
Confidence 333344433 6766665544444444 88999999999999 799999999999999988776643
Q ss_pred cccceeccC-CCcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCC
Q 001790 396 PFQASIFKD-VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (1012)
Q Consensus 396 ~~~~~~~~~-h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d 474 (1012)
+.+ |...|.+++|+ +..+.+|+.|+.|..+|+...+.... ++.+|...|..+.|++|+. ++|+|+.|
T Consensus 255 ------~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnD 322 (484)
T KOG0305|consen 255 ------LRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGND 322 (484)
T ss_pred ------ccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCc
Confidence 555 99999999998 77899999999999999998876654 4789999999999999999 89999999
Q ss_pred CcEEEEe-CCCcceeeecCCccCEEEEeccccCCceEEEEEe--cCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCC
Q 001790 475 KLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA--IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551 (1012)
Q Consensus 475 ~~v~vwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~--~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 551 (1012)
+.+.||| ....++..+..|.+.|.+++|+|-.. .+||+|+ .|+.|++||..++..+.... .+..|.++.|++..+
T Consensus 323 N~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~k 400 (484)
T KOG0305|consen 323 NVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYK 400 (484)
T ss_pred cceEeccCCCccccEEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCC
Confidence 9999999 78888999999999999999999865 4888864 69999999998766655443 566799999999998
Q ss_pred eEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 001790 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (1012)
Q Consensus 552 ~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 617 (1012)
.|+++.. ..++.|.||+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-..
T Consensus 401 Ei~sthG--~s~n~i~lw~~ps~~~~~~l~gH~~-RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 401 ELLSTHG--YSENQITLWKYPSMKLVAELLGHTS-RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEEEecC--CCCCcEEEEeccccceeeeecCCcc-eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 8877653 2467899999999999999999988 7999999999999999999999999998764
No 90
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.6e-26 Score=240.79 Aligned_cols=286 Identities=21% Similarity=0.292 Sum_probs=235.0
Q ss_pred EEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEECCC
Q 001790 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH 428 (1012)
Q Consensus 349 ~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~ 428 (1012)
++..++.+.++|.+|+.||.|++|++..-....+.+ + ...+..|.+.|..++...+|+.|++++.|.
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~------------~-~asme~HsDWVNDiiL~~~~~tlIS~SsDt 95 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTP------------Y-IASMEHHSDWVNDIILCGNGKTLISASSDT 95 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccc------------h-hhhhhhhHhHHhhHHhhcCCCceEEecCCc
Confidence 556666555589999999999999987544322111 0 122667999999999999999999999999
Q ss_pred eEEEEeecCCCcceeeeeeeccccCeEEEEE-eCCCCceEEEEEcCCCcEEEEe-CCC--ccee--------eec-CCcc
Q 001790 429 LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAF-AYPNKLLCVVTCGDDKLIKVWE-LSG--RKLF--------NFE-GHEA 495 (1012)
Q Consensus 429 ~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~-s~~~~~~~l~s~~~d~~v~vwd-~~~--~~~~--------~~~-~h~~ 495 (1012)
+|++|+...+. -....++..|...|.|++. .++.. ++|+||-|+.|.+|| ..| +.+. .+. |+..
T Consensus 96 TVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~ 172 (735)
T KOG0308|consen 96 TVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD 172 (735)
T ss_pred eEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence 99999998874 1223367889999999999 66666 899999999999999 655 2222 233 7888
Q ss_pred CEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCe
Q 001790 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1012)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~ 575 (1012)
.|++++.++ +|..+++|+..+.+++||.++......+.+|...|..+..+.||+.++++++ ||+|++||+...+
T Consensus 173 siYSLA~N~--t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----DgtIrlWdLgqQr 246 (735)
T KOG0308|consen 173 SIYSLAMNQ--TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGTIRLWDLGQQR 246 (735)
T ss_pred ceeeeecCC--cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----CceEEeeeccccc
Confidence 999999855 5689999999999999999999999999999999999999999999999995 9999999999999
Q ss_pred eeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEE
Q 001790 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655 (1012)
Q Consensus 576 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~i 655 (1012)
++.++..|.. .+.++..+|+-.++++|+.||.|+.=|+.+......+-...+ +|..+..+...+-+-+++.|+.|+-
T Consensus 247 Cl~T~~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~da--Pv~~l~~~~~~~~~WvtTtds~I~r 323 (735)
T KOG0308|consen 247 CLATYIVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDA--PVLKLHLHEHDNSVWVTTTDSSIKR 323 (735)
T ss_pred eeeeEEeccC-ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCC--chhhhhhccccCCceeeecccccee
Confidence 9999999988 699999999999999999999999999998544333332233 6788888765555677888999999
Q ss_pred EEcc
Q 001790 656 LANA 659 (1012)
Q Consensus 656 wd~~ 659 (1012)
|...
T Consensus 324 W~~~ 327 (735)
T KOG0308|consen 324 WKLE 327 (735)
T ss_pred cCCc
Confidence 9764
No 91
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=1e-25 Score=223.56 Aligned_cols=283 Identities=17% Similarity=0.203 Sum_probs=244.9
Q ss_pred CceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEE
Q 001790 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1012)
Q Consensus 345 ~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 424 (1012)
..|+++...|... .+.+|+.|..+.++|..+++.+.. +.||...|+.+.|+|+...++++
T Consensus 220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~-------------------~~Gh~kki~~v~~~~~~~~v~~a 279 (506)
T KOG0289|consen 220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILAT-------------------LKGHTKKITSVKFHKDLDTVITA 279 (506)
T ss_pred CCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhh-------------------ccCcceEEEEEEeccchhheeec
Confidence 3789999998855 699999999999999998887653 89999999999999999999999
Q ss_pred ECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecC--CccCEEEEe
Q 001790 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG--HEAPVYSIC 501 (1012)
Q Consensus 425 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~--h~~~v~~~~ 501 (1012)
+.|..|+||......+.. ....|.++|+.+..+|.|. ||++++.|++..+.| .+|..+..... ..-.+++.+
T Consensus 280 Sad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 280 SADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred CCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 999999999998766544 4678999999999999999 899999999999999 88888766553 233588999
Q ss_pred ccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeec
Q 001790 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1012)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~ 581 (1012)
||| ||.++.+|..||.+++||+........+.+|.++|.+++|+.+|-+|++++ +|+.|++||++..+..+++.
T Consensus 355 fHp--DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~a----dd~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 355 FHP--DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAA----DDGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred EcC--CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEe----cCCeEEEEEehhhcccceee
Confidence 988 668999999999999999999999999999999999999999999999998 58889999999999888888
Q ss_pred CCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEc
Q 001790 582 GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1012)
Q Consensus 582 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~ 658 (1012)
......+..+.|.+.|.+++.++.|=.|++++-.+.+.......+.+.+..+++.|....+++++++.|..++++.+
T Consensus 429 l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 429 LDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 87776899999999999999998887777777555443333333344457799999999999999999999888754
No 92
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=9.1e-25 Score=209.74 Aligned_cols=294 Identities=17% Similarity=0.266 Sum_probs=240.5
Q ss_pred eeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcE
Q 001790 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFL 566 (1012)
Q Consensus 487 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 566 (1012)
.+.+....+.|.++.|+. +|..+++++.|.++++||..++.....+..+...+..++|......++.++. -.|..|
T Consensus 7 ak~f~~~~~~i~sl~fs~--~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sSt--k~d~tI 82 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFSD--DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSST--KEDDTI 82 (311)
T ss_pred ccccccCCCceeEEEecC--CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccC--CCCCce
Confidence 344555677899999865 6789999999999999999999999988888888899999887777776654 257899
Q ss_pred EEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEE
Q 001790 567 VEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAV 646 (1012)
Q Consensus 567 ~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~ 646 (1012)
+..++.+.+.++-|.||.+ .|..++.+|-+..+++++.|++|++||++..++...+...+. ..++|+|+|-.+|+
T Consensus 83 ryLsl~dNkylRYF~GH~~-~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~----pi~AfDp~GLifA~ 157 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKK-RVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR----PIAAFDPEGLIFAL 157 (311)
T ss_pred EEEEeecCceEEEcCCCCc-eEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC----cceeECCCCcEEEE
Confidence 9999999999999999998 899999999999999999999999999998888887776543 67899999999999
Q ss_pred EECCCcEEEEEccCCceeeecccCCccccccCccceeeeccccccccccCCCCCccccccCCCCCCccccCCCCCCCCCC
Q 001790 647 TTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMD 726 (1012)
Q Consensus 647 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1012)
+...+.|++||++.-. .
T Consensus 158 ~~~~~~IkLyD~Rs~d-------k-------------------------------------------------------- 174 (311)
T KOG1446|consen 158 ANGSELIKLYDLRSFD-------K-------------------------------------------------------- 174 (311)
T ss_pred ecCCCeEEEEEecccC-------C--------------------------------------------------------
Confidence 9988899999986420 0
Q ss_pred CCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeeccCeeEeeeccccccCCCCCccc
Q 001790 727 KPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATA 806 (1012)
Q Consensus 727 ~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~ 806 (1012)
+....+.+..
T Consensus 175 -----------------------gPF~tf~i~~----------------------------------------------- 184 (311)
T KOG1446|consen 175 -----------------------GPFTTFSITD----------------------------------------------- 184 (311)
T ss_pred -----------------------CCceeEccCC-----------------------------------------------
Confidence 0000000000
Q ss_pred cccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEEEc-CCcEEEEEcCCCeEEEEEcCCCCCe---eEEEEec
Q 001790 807 SAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPAS---TFLAFHP 882 (1012)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~i---~~l~~sp 882 (1012)
+.....+.+.|||||+++..+. .+.+++.|.-+|..+.++.++...- ...+|+|
T Consensus 185 ----------------------~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP 242 (311)
T KOG1446|consen 185 ----------------------NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTP 242 (311)
T ss_pred ----------------------CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECC
Confidence 0334566788999999888877 6789999999999888888766532 5678999
Q ss_pred CCCcEEEEEeCCCeEEEEEccCCeEeEEecc-cCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 001790 883 QDNNIIAIGTEDSTIHIYNVRVDEVKSKLKG-HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTW 947 (1012)
Q Consensus 883 ~d~~~las~~~dg~v~iwd~~~~~~~~~~~~-h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~ 947 (1012)
|++++++|+.||+|.+|++++|..+..+++ +.+++.++.|+|.-.+++|++ ..+.+|=....
T Consensus 243 -ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~~~ 305 (311)
T KOG1446|consen 243 -DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPDED 305 (311)
T ss_pred -CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEecccc
Confidence 999999999999999999999999999998 799999999999877776655 56888866543
No 93
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1e-26 Score=242.19 Aligned_cols=241 Identities=17% Similarity=0.233 Sum_probs=205.8
Q ss_pred EEEEcc-CCCEEEEEECCCeEEEEeecCCCcc---eeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCC-
Q 001790 411 RVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDL---RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG- 484 (1012)
Q Consensus 411 ~v~~sp-dg~~las~~~d~~v~vwd~~~~~~~---~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~- 484 (1012)
.+..++ .+++|.+|+.||.|++|++...... .....++.|...|++++...+++ .|+++|.|-+|++|+ ..+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence 344444 6788999999999999998754321 11335788999999999999998 799999999999999 555
Q ss_pred -cceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCcee----------eec-CCCCcEEEEEEccCCCe
Q 001790 485 -RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----------DYD-APGHWCTTMLYSADGSR 552 (1012)
Q Consensus 485 -~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~----------~~~-~~~~~v~~~~~s~~~~~ 552 (1012)
-+..++..|.+.|.|+++. ..+..++++||-|+.|.+||++++.... .+. ++...|++++.++.|..
T Consensus 107 ~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred chhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence 6778899999999999984 3355799999999999999999763311 122 55668999999999988
Q ss_pred EEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCc
Q 001790 553 LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL 632 (1012)
Q Consensus 553 l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1012)
+++|+. ++.+++||.++++.+..+.+|+. .|.++..++||..+++++.||+|++||+...+++.++..|.. .|
T Consensus 186 ivsGgt----ek~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--~V 258 (735)
T KOG0308|consen 186 IVSGGT----EKDLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE--GV 258 (735)
T ss_pred EEecCc----ccceEEeccccccceeeeecccc-ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC--ce
Confidence 888885 88899999999999999999998 899999999999999999999999999999999999887765 69
Q ss_pred ceeEeecCCCEEEEEECCCcEEEEEccCC
Q 001790 633 PRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1012)
Q Consensus 633 ~~v~~s~~g~~l~~~~~dg~i~iwd~~~~ 661 (1012)
+++..+|+-..+++|+.||.|..=|+.+.
T Consensus 259 WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 259 WALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred EEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 99999999999999999999998888764
No 94
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=7.8e-26 Score=237.62 Aligned_cols=282 Identities=16% Similarity=0.304 Sum_probs=237.6
Q ss_pred ceEeec-CCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEE-EEE
Q 001790 337 VAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR-VAW 414 (1012)
Q Consensus 337 ~~~~~~-h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-v~~ 414 (1012)
..+.++ |+..|..+++.+.. .+++||.||++++|+-..++.+.+ ..+.+|.+.|.+ ++|
T Consensus 6 ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~-----------------~~~~~~~g~i~~~i~y 66 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLET-----------------HAFEGPKGFIANSICY 66 (745)
T ss_pred eEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCcccccc-----------------eecccCcceeecccee
Confidence 344454 99999999988776 488999999999999766554432 336678888887 888
Q ss_pred cc-CCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEeCCCcceeeecCC
Q 001790 415 SP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH 493 (1012)
Q Consensus 415 sp-dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~h 493 (1012)
-+ ++-.|++|+.|++|.+|...+..++. +|.+|...|.++....++. ++|||.|.++++|. .+++...+.+|
T Consensus 67 ~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~-~~~l~~~l~gH 139 (745)
T KOG0301|consen 67 AESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR-IGELVYSLQGH 139 (745)
T ss_pred ccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec-chhhhcccCCc
Confidence 86 55679999999999999999988776 7999999999999877775 89999999999997 45566679999
Q ss_pred ccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCC
Q 001790 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1012)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~ 573 (1012)
+..|++++..+.. .++||+.|.+|++|. .+....++.+|.+.|..+++-+++.++ +|+ +||.|++|++ +
T Consensus 140 ~asVWAv~~l~e~---~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~fl-Scs----NDg~Ir~w~~-~ 208 (745)
T KOG0301|consen 140 TASVWAVASLPEN---TYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSHFL-SCS----NDGSIRLWDL-D 208 (745)
T ss_pred chheeeeeecCCC---cEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCCeE-eec----CCceEEEEec-c
Confidence 9999999876643 789999999999995 467788899999999999999887654 555 5999999998 8
Q ss_pred CeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcE
Q 001790 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (1012)
Q Consensus 574 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i 653 (1012)
|+++.++.+|+. -+.+++..+++..++++++|++++||+.. ++.+.+..++. .|+++.+-++|. +++|+.||.|
T Consensus 209 ge~l~~~~ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~SDG~V 282 (745)
T KOG0301|consen 209 GEVLLEMHGHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGSDGRV 282 (745)
T ss_pred Cceeeeeeccce-EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEeccCceE
Confidence 999999999988 89999988889999999999999999976 77888877654 688988888876 6788899999
Q ss_pred EEEEccCC
Q 001790 654 KILANAIG 661 (1012)
Q Consensus 654 ~iwd~~~~ 661 (1012)
|||.....
T Consensus 283 rVfT~~k~ 290 (745)
T KOG0301|consen 283 RVFTVDKD 290 (745)
T ss_pred EEEEeccc
Confidence 99987643
No 95
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=7.2e-25 Score=243.07 Aligned_cols=255 Identities=11% Similarity=0.126 Sum_probs=192.5
Q ss_pred ecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC-CCEEEEEECCCeEEEEeecCCCc-
Q 001790 363 GSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSND- 440 (1012)
Q Consensus 363 g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-g~~las~~~d~~v~vwd~~~~~~- 440 (1012)
|+.++.|++|+......+ ..+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++..
T Consensus 50 GG~~gvI~L~~~~r~~~v-------------------~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~ 110 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPV-------------------IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES 110 (568)
T ss_pred CCceeEEEeeecCCCceE-------------------EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 455677788876543322 237899999999999996 89999999999999999986432
Q ss_pred c----eeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCCccCEEEEeccccCCceEEEEEe
Q 001790 441 L----RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA 515 (1012)
Q Consensus 441 ~----~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~ 515 (1012)
. .....+.+|...|.+++|+|++.. ++++++.|++|++|| .+++.+..+. |...|.+++|++ +|.+|++++
T Consensus 111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp--dG~lLat~s 186 (568)
T PTZ00420 111 VKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI--KGNLLSGTC 186 (568)
T ss_pred ccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC--CCCEEEEEe
Confidence 1 122257789999999999999874 568999999999999 7777776665 567899999977 567999999
Q ss_pred cCCeEEEEEcCCCCceeeecCCCCcEEE-----EEEccCCCeEEEeeecCCCCCcEEEEeCCC-CeeeeeecCCCCCcc-
Q 001790 516 IDGKIKAWLYDTMGSRVDYDAPGHWCTT-----MLYSADGSRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSN- 588 (1012)
Q Consensus 516 ~dg~i~~wd~~~~~~~~~~~~~~~~v~~-----~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~-~~~~~~~~~~~~~~v- 588 (1012)
.|+.|++||++++.....+..|.+.+.+ ..|++++.++++++.++..++.|++||++. ++++..+..+....+
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L 266 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPL 266 (568)
T ss_pred cCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccce
Confidence 9999999999998888888888765432 345689999999886443446899999985 556655543332122
Q ss_pred eEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCC
Q 001790 589 GVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641 (1012)
Q Consensus 589 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g 641 (1012)
......+++.++++|+.|+.|++|++..+. +..+.......++.+++|.|..
T Consensus 267 ~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 267 IPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 222234457888899999999999998764 3334333344578899999964
No 96
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=8.7e-26 Score=226.39 Aligned_cols=282 Identities=20% Similarity=0.233 Sum_probs=235.5
Q ss_pred ccCCCcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceee--------------eee-eccccCeEEEEEeCCCCce
Q 001790 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQH--------------SQI-DAHVGAVNDLAFAYPNKLL 466 (1012)
Q Consensus 402 ~~~h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~--------------~~l-~~h~~~v~~l~~s~~~~~~ 466 (1012)
...|.-+|.|++++||+++..+++.+++|.=|++.+|+..+.+ ..- .+|...+.+++.++||+
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-- 215 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-- 215 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence 5568999999999999999999999999999999988743110 001 27888999999999999
Q ss_pred EEEEEcCCCcEEEEe-CCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEE
Q 001790 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (1012)
Q Consensus 467 ~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 545 (1012)
+|++|+.|..|.||+ .+.+.++.+.+|.+.|.+++|-... .-+++++.|+.|++|+++......++-+|...|..+.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 899999999999999 9999999999999999999996543 5799999999999999998888888999999999999
Q ss_pred EccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEec
Q 001790 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1012)
Q Consensus 546 ~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1012)
....++.+-+++ .|.++++|++. .+....|.++.. .+.|++|-. ..++++|+.+|.|.+|++...+++.....
T Consensus 294 aL~reR~vtVGg----rDrT~rlwKi~-eesqlifrg~~~-sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 294 ALSRERCVTVGG----RDRTVRLWKIP-EESQLIFRGGEG-SIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred hhcccceEEecc----ccceeEEEecc-ccceeeeeCCCC-CeeeEEEec-ccceeeccCCceEEEeeecccCceeEeec
Confidence 988888777776 59999999994 344455666654 788888865 46899999999999999999888776643
Q ss_pred CCC----------CCCcceeEeecCCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeecccccccccc
Q 001790 626 EGG----------LPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSS 695 (1012)
Q Consensus 626 ~~~----------~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~ 695 (1012)
..+ ...|++++..|...++|+|+.+|.|++|-+.++.+.+..+.... ..+-|++++|+++|+.++++
T Consensus 367 AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls---~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 367 AHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS---LVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred cccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc---cccEEEEEEEccCCCEEEEe
Confidence 221 12578999999999999999999999999999866665555443 44669999999999987755
Q ss_pred CC
Q 001790 696 GT 697 (1012)
Q Consensus 696 ~~ 697 (1012)
.+
T Consensus 444 iG 445 (479)
T KOG0299|consen 444 IG 445 (479)
T ss_pred cc
Confidence 44
No 97
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.94 E-value=3.8e-25 Score=228.78 Aligned_cols=215 Identities=11% Similarity=0.138 Sum_probs=162.8
Q ss_pred eccCCCcceEEEEEcc-CCCEEEEEECCCeEEEEeecCCCccee---eeeeeccccCeEEEEEeCCCCceEEEEEcCCCc
Q 001790 401 IFKDVPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLRQ---HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (1012)
Q Consensus 401 ~~~~h~~~V~~v~~sp-dg~~las~~~d~~v~vwd~~~~~~~~~---~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~ 476 (1012)
++.+|.+.|+.+.||| +..+||+|+.|..|+||.+..|-.... ...+.+..-.|.++.|+|.... +++++ ..|+
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg-il~s~-a~g~ 151 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG-ILASG-AHGS 151 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc-eEEec-cCce
Confidence 4889999999999999 778999999999999999985432221 1123344457899999998875 45544 4799
Q ss_pred EEEEe-CCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCce-eeecCCCC-cEEEEEEccCCCeE
Q 001790 477 IKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR-VDYDAPGH-WCTTMLYSADGSRL 553 (1012)
Q Consensus 477 v~vwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~-~v~~~~~s~~~~~l 553 (1012)
+++|| .+++.+..+.+|.+.|.++.|+. ||.+|++++.|..|+|||.+..... ....+|++ .-..+.|.-+-..|
T Consensus 152 v~i~D~stqk~~~el~~h~d~vQSa~Wse--DG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rl 229 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELSGHTDKVQSADWSE--DGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERL 229 (1012)
T ss_pred EEEEEcccCceeecccCCchhhhcccccc--CCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhh
Confidence 99999 89999999999999999999954 8899999999999999999875543 34455554 34556777666678
Q ss_pred EEeeecCCCCCcEEEEeCCC-CeeeeeecCCCCCcceEEEEecCCCEEEEEe-CCCcEEEEeCCCCee
Q 001790 554 FSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNI 619 (1012)
Q Consensus 554 ~~~~~~~~~~~~i~lwd~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~ 619 (1012)
++.+.+.-....|++||.+. +..+.++.-.....+..--|.||.++++.++ .+.+++.+.+...+.
T Consensus 230 isTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qP 297 (1012)
T KOG1445|consen 230 ISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQP 297 (1012)
T ss_pred hhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCCc
Confidence 87776655677899999876 3455555544333455567889988877766 678888888866544
No 98
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=6.5e-27 Score=226.78 Aligned_cols=283 Identities=14% Similarity=0.195 Sum_probs=229.3
Q ss_pred ecCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCE
Q 001790 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1012)
Q Consensus 341 ~~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 420 (1012)
-+|.+.|.|++=+|..-..+|+|+.||.|+|||+.+..+..+ +..|.+.|..|++.. ..
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~v~~--~~ 121 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGICVTQ--TS 121 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEEecc--cc
Confidence 469999999999999844799999999999999988776643 778999999999987 77
Q ss_pred EEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCCccCEEE
Q 001790 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1012)
Q Consensus 421 las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~v~~ 499 (1012)
+++++.|.+|+.|.++.. ..+ ++. -...+..+.-+..+. .++|||. .|.||| ....++..+.-..+.|.+
T Consensus 122 ~~tvgdDKtvK~wk~~~~-p~~---til-g~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~s 192 (433)
T KOG0268|consen 122 FFTVGDDKTVKQWKIDGP-PLH---TIL-GKSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVSSMSWGADSISS 192 (433)
T ss_pred eEEecCCcceeeeeccCC-cce---eee-ccccccccccccccc--cccccCc--eeeecccccCCccceeecCCCceeE
Confidence 889999999999998873 333 333 244566777666666 7899885 589999 788899999888889999
Q ss_pred EeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCC-eeee
Q 001790 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG-TIKR 578 (1012)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~-~~~~ 578 (1012)
+.|+|... .+|++++.|+.|.+||++...+...... ...-+.++|+|.+-.++++. +|..++.+|++.- .++.
T Consensus 193 vkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~----ED~nlY~~DmR~l~~p~~ 266 (433)
T KOG0268|consen 193 VKFNPVET-SILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAAN----EDHNLYTYDMRNLSRPLN 266 (433)
T ss_pred EecCCCcc-hheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeecc----ccccceehhhhhhcccch
Confidence 99998765 6888898999999999998877665432 22457899999665565555 7999999999875 4566
Q ss_pred eecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEc
Q 001790 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1012)
Q Consensus 579 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~ 658 (1012)
.+.+|.. .|..+.|+|.|+.+++|+.|.+|+||..+.+.-...+.... ...|.|+.||.|.+++++|++|+.|++|..
T Consensus 267 v~~dhvs-AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkR-Mq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 267 VHKDHVS-AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKR-MQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred hhcccce-eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhh-hheeeEEEEeccccEEEecCCCcceeeeec
Confidence 7777766 89999999999999999999999999998776543332211 236899999999999999999999999986
Q ss_pred cCC
Q 001790 659 AIG 661 (1012)
Q Consensus 659 ~~~ 661 (1012)
...
T Consensus 345 ~As 347 (433)
T KOG0268|consen 345 KAS 347 (433)
T ss_pred chh
Confidence 543
No 99
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=5.9e-25 Score=243.50 Aligned_cols=271 Identities=15% Similarity=0.198 Sum_probs=209.2
Q ss_pred CCcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcc----------eeeeeeeccccCeEEEEEeC-CCCceEEEEEcC
Q 001790 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDL----------RQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGD 473 (1012)
Q Consensus 405 h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~----------~~~~~l~~h~~~v~~l~~s~-~~~~~~l~s~~~ 473 (1012)
|-..|.....++|+..+++++.+.....|+...+..+ .....+.+|.+.|.+++|+| ++. +|++|+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~ 96 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASE 96 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeC
Confidence 3345666677778777777777777777876544322 11224779999999999999 777 8999999
Q ss_pred CCcEEEEe-CCC-------cceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEE
Q 001790 474 DKLIKVWE-LSG-------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (1012)
Q Consensus 474 d~~v~vwd-~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 545 (1012)
|++|++|| .++ .++..+.+|...|.+++|+|.. +.+|++++.|++|++||++++.....+..|...|.+++
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 99999999 443 3567889999999999998864 35899999999999999999888888888999999999
Q ss_pred EccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEe----CCCcEEEEeCCCCe-eE
Q 001790 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----EDSQIKFWDMDNVN-IL 620 (1012)
Q Consensus 546 ~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~-~~ 620 (1012)
|+|+|.+|++++ .|+.|++||+++++.+..+.+|.......+.|.+++..+++++ .|+.|++||+++.. .+
T Consensus 176 ~spdG~lLatgs----~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~ 251 (493)
T PTZ00421 176 WNLDGSLLCTTS----KDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY 251 (493)
T ss_pred EECCCCEEEEec----CCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce
Confidence 999999999998 5999999999999999999888764556678899888888765 47899999998754 33
Q ss_pred EEEecCCCCCCcceeEeecCCCEEEEEE-CCCcEEEEEccCCceeeecccCCccccccCccceeeeccc
Q 001790 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVS 688 (1012)
Q Consensus 621 ~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~ 688 (1012)
.....+ ....+....|++++.++++++ .|+.|++||+.++... ..... ....++..++|.|.
T Consensus 252 ~~~~~d-~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~-~~~~~----~s~~~~~g~~~~pk 314 (493)
T PTZ00421 252 STVDLD-QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLT-FCSSY----SSVEPHKGLCMMPK 314 (493)
T ss_pred eEeccC-CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceE-EEeec----cCCCCCcceEeccc
Confidence 333322 222455667899999999887 4999999999887422 22211 12234566677664
No 100
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=1.8e-26 Score=227.80 Aligned_cols=247 Identities=20% Similarity=0.269 Sum_probs=210.1
Q ss_pred ccCCCcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe
Q 001790 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1012)
Q Consensus 402 ~~~h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd 481 (1012)
+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....+|.|..+.|+++.|.++++ .+++++.|+.+++|+
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWN 247 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeee
Confidence 66799999999999999999999999999999998876 333446888899999999999999 788999999999999
Q ss_pred -CCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecC
Q 001790 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1012)
Q Consensus 482 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1012)
.+.+...++.||++.|+++.|.... ..+++|+.|.+|+.||+....+..+.- ....+..|..+ ...++++.
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH--- 319 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGH--- 319 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecc---
Confidence 8889999999999999999986543 349999999999999998866555433 33345555554 44566666
Q ss_pred CCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCC--CCCcceeEee
Q 001790 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG--LPNLPRLRFS 638 (1012)
Q Consensus 561 ~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~~s 638 (1012)
-|+.|++||.++..+......+. .|+++..++++..+++++.|..+.+.|+++.+....+...+. ....+.+.||
T Consensus 320 -~DkkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS 396 (459)
T KOG0288|consen 320 -FDKKVRFWDIRSADKTRSVPLGG--RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS 396 (459)
T ss_pred -cccceEEEeccCCceeeEeecCc--ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEEC
Confidence 48889999999999999888765 799999999999999999999999999999998888765442 2247899999
Q ss_pred cCCCEEEEEECCCcEEEEEccCCc
Q 001790 639 KEGNLLAVTTADNGFKILANAIGL 662 (1012)
Q Consensus 639 ~~g~~l~~~~~dg~i~iwd~~~~~ 662 (1012)
|++.++++|+.||.|+||++.+++
T Consensus 397 pd~~YvaAGS~dgsv~iW~v~tgK 420 (459)
T KOG0288|consen 397 PDGSYVAAGSADGSVYIWSVFTGK 420 (459)
T ss_pred CCCceeeeccCCCcEEEEEccCce
Confidence 999999999999999999998873
No 101
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.8e-22 Score=219.52 Aligned_cols=276 Identities=16% Similarity=0.201 Sum_probs=224.1
Q ss_pred cCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCc-eecccccccccccccCccccceeccCCCcceEEEEEccCCCE
Q 001790 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRD-RLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1012)
Q Consensus 342 ~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 420 (1012)
.|...-+.++|.|+|. ++.+++.||.|++|+..... ... .+.-++..|.+++.. +.+
T Consensus 11 aht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~-------------------ti~~~g~~v~~ia~~--s~~ 68 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPE-------------------TIDISGELVSSIACY--SNH 68 (933)
T ss_pred hccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCc-------------------hhhccCceeEEEeec--ccc
Confidence 4788899999999999 68888889999999976542 211 122277788888764 559
Q ss_pred EEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCCccCEEE
Q 001790 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1012)
Q Consensus 421 las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~v~~ 499 (1012)
|++|+.+++|.+|.+.+++.-. .+...+-++++++|+.+|+ ++|.||.|-.|++-+ .++.....+++|.++|.+
T Consensus 69 f~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~ 143 (933)
T KOG1274|consen 69 FLTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ 143 (933)
T ss_pred eEEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceee
Confidence 9999999999999999887554 3555678899999999999 899999999999999 888888999999999999
Q ss_pred EeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCC--------CCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeC
Q 001790 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--------GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1012)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~--------~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~ 571 (1012)
+.++| ++.+|++.+-||.|++||++++.....+..- ...+..++|+|+|..+++.+. ++.|.+|+.
T Consensus 144 l~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy~r 217 (933)
T KOG1274|consen 144 LSYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVYSR 217 (933)
T ss_pred eeEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEEcc
Confidence 99977 5679999999999999999987766554331 336778999999666666653 899999999
Q ss_pred CCCeeeeeecCCCCCc-ceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECC
Q 001790 572 SEGTIKRTYAGFRKKS-NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1012)
Q Consensus 572 ~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d 650 (1012)
.+++....+....... +..+.|+|+|.+|++++.||.|.|||.++.+. +.....|.+++|.|+.+-+-.....
T Consensus 218 ~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~~~ 291 (933)
T KOG1274|consen 218 KGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLITAL 291 (933)
T ss_pred CCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEeec
Confidence 9999988887654433 88899999999999999999999999988222 2333479999999998877665555
Q ss_pred CcEEEE
Q 001790 651 NGFKIL 656 (1012)
Q Consensus 651 g~i~iw 656 (1012)
|...+|
T Consensus 292 g~~~~~ 297 (933)
T KOG1274|consen 292 GTLGVS 297 (933)
T ss_pred cccccC
Confidence 555544
No 102
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=7e-26 Score=209.18 Aligned_cols=249 Identities=15% Similarity=0.279 Sum_probs=204.9
Q ss_pred ceEeecCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc
Q 001790 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1012)
Q Consensus 337 ~~~~~~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 416 (1012)
....+.-.+.+..++||++....+++++.||+++|||+..... ++ ..++.|...|.++.|++
T Consensus 53 e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~----Pi--------------~~~kEH~~EV~Svdwn~ 114 (311)
T KOG0277|consen 53 ECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK----PI--------------HKFKEHKREVYSVDWNT 114 (311)
T ss_pred EEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc----ch--------------hHHHhhhhheEEecccc
Confidence 3344556789999999999888899999999999999543221 11 34888999999999999
Q ss_pred -CCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe--CCCcceeeecCC
Q 001790 417 -DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGH 493 (1012)
Q Consensus 417 -dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd--~~~~~~~~~~~h 493 (1012)
+++.+++++-|++|++|+...++.+. ++.+|...|...+|+|...+ +++++|.|+++++|| ..|+.+. +..|
T Consensus 115 ~~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l~lwdvr~~gk~~~-i~ah 189 (311)
T KOG0277|consen 115 VRRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGTLRLWDVRSPGKFMS-IEAH 189 (311)
T ss_pred ccceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCceEEEEEecCCCceeE-EEec
Confidence 67778889999999999998877666 78999999999999998777 899999999999999 5566655 8899
Q ss_pred ccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCc-eeeecCCCCcEEEEEEccCCC-eEEEeeecCCCCCcEEEEeC
Q 001790 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGS-RLFSCGTSKDGDSFLVEWNE 571 (1012)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~i~lwd~ 571 (1012)
...+.++.|+.. +...+++|+.|+.|+.||++..+. ..++.+|+-.|..++|||... .|++++. |-++++||.
T Consensus 190 ~~Eil~cdw~ky-~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasY----DmT~riw~~ 264 (311)
T KOG0277|consen 190 NSEILCCDWSKY-NHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASY----DMTVRIWDP 264 (311)
T ss_pred cceeEeeccccc-CCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccc----cceEEeccc
Confidence 999999999865 447999999999999999987654 457788888999999999654 5667764 899999999
Q ss_pred CCCee-eeeecCCCCCcceEEEEec-CCCEEEEEeCCCcEEEEeC
Q 001790 572 SEGTI-KRTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDM 614 (1012)
Q Consensus 572 ~~~~~-~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~ 614 (1012)
..+.. +.+...|.. -+..+.|++ +..++++++-|+.++||+.
T Consensus 265 ~~~ds~~e~~~~HtE-Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 265 ERQDSAIETVDHHTE-FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccchhhhhhhhccce-EEeccccccccCceeeecccccceeeecc
Confidence 86554 444554443 677788887 4578999999999999984
No 103
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.1e-26 Score=223.26 Aligned_cols=241 Identities=17% Similarity=0.266 Sum_probs=199.8
Q ss_pred ccCCCcceEEEEEccCC-CEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEE
Q 001790 402 FKDVPISVSRVAWSPDG-NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1012)
Q Consensus 402 ~~~h~~~V~~v~~spdg-~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vw 480 (1012)
+.||.+.|.|++=+|.. ..+|+|+.||.|+|||+...+++. ++..|.+.|..+++.. . .+++++.|++|+.|
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~---~f~AH~G~V~Gi~v~~--~--~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR---TFKAHEGLVRGICVTQ--T--SFFTVGDDKTVKQW 134 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh---eeecccCceeeEEecc--c--ceEEecCCcceeee
Confidence 68899999999999977 789999999999999999988777 6889999999999987 3 58999999999999
Q ss_pred eCCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecC
Q 001790 481 ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1012)
Q Consensus 481 d~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1012)
...+.++.++.+. ..+..+.-+.. +..++|+|. .|.|||.....+...+.-....|.++.|+|....++.++.
T Consensus 135 k~~~~p~~tilg~-s~~~gIdh~~~--~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~-- 207 (433)
T KOG0268|consen 135 KIDGPPLHTILGK-SVYLGIDHHRK--NSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCA-- 207 (433)
T ss_pred eccCCcceeeecc-ccccccccccc--cccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeec--
Confidence 9777777777643 34555554332 346777765 4888999988888888888889999999998876665553
Q ss_pred CCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCee-EEEEecCCCCCCcceeEeec
Q 001790 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI-LTSTDAEGGLPNLPRLRFSK 639 (1012)
Q Consensus 561 ~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s~ 639 (1012)
.|+.|.+||++++.+++...... .-+.++|+|.+-.+++|++|..++.||++..+. +.... +|.+.|.++.|||
T Consensus 208 -sDrsIvLyD~R~~~Pl~KVi~~m--RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~--dhvsAV~dVdfsp 282 (433)
T KOG0268|consen 208 -SDRSIVLYDLRQASPLKKVILTM--RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK--DHVSAVMDVDFSP 282 (433)
T ss_pred -cCCceEEEecccCCccceeeeec--cccceecCccccceeeccccccceehhhhhhcccchhhc--ccceeEEEeccCC
Confidence 59999999999999887765433 356799999877888899999999999987543 33333 4566899999999
Q ss_pred CCCEEEEEECCCcEEEEEccCC
Q 001790 640 EGNLLAVTTADNGFKILANAIG 661 (1012)
Q Consensus 640 ~g~~l~~~~~dg~i~iwd~~~~ 661 (1012)
.|+-+++|+.|.+|+||....+
T Consensus 283 tG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 283 TGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred CcchhccccccceEEEeecCCC
Confidence 9999999999999999988665
No 104
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.4e-25 Score=241.22 Aligned_cols=247 Identities=13% Similarity=0.200 Sum_probs=184.7
Q ss_pred CCCcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeee--------eeeccccCeEEEEEeC---CCCceEEEEEc
Q 001790 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS--------QIDAHVGAVNDLAFAY---PNKLLCVVTCG 472 (1012)
Q Consensus 404 ~h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~--------~l~~h~~~v~~l~~s~---~~~~~~l~s~~ 472 (1012)
.|.+.|.++.||+||+|||+||.|+.|+||.+...+....-. .+.. .+.+..+.-++ .++....-.+.
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~-~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNA-NSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhh-ccccCcccccccccccccccccccc
Confidence 799999999999999999999999999999987633211000 0000 00011111111 11111122233
Q ss_pred CCCcEEEEe----CCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEcc
Q 001790 473 DDKLIKVWE----LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA 548 (1012)
Q Consensus 473 ~d~~v~vwd----~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~ 548 (1012)
....+.+-+ ...+++..|.||.+.|..+.|+.+ .+|++++.|.+||+|++....++..+. |...|+|++|+|
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn---~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnP 419 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN---NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNP 419 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccC---CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecc
Confidence 333333222 456788999999999999999753 499999999999999999877777665 888999999999
Q ss_pred -CCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCC
Q 001790 549 -DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG 627 (1012)
Q Consensus 549 -~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 627 (1012)
|.+++++|+- |+.++||++...+.+.-...+ ..|++++|.|||+..++|+.+|.+++|+....+.........
T Consensus 420 vDDryFiSGSL----D~KvRiWsI~d~~Vv~W~Dl~--~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 420 VDDRYFISGSL----DGKVRLWSISDKKVVDWNDLR--DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred cCCCcEeeccc----ccceEEeecCcCeeEeehhhh--hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence 7789999985 999999999988887766655 379999999999999999999999999999888766554322
Q ss_pred C------CCCcceeEeec-CCCEEEEEECCCcEEEEEccCC
Q 001790 628 G------LPNLPRLRFSK-EGNLLAVTTADNGFKILANAIG 661 (1012)
Q Consensus 628 ~------~~~v~~v~~s~-~g~~l~~~~~dg~i~iwd~~~~ 661 (1012)
+ ...|+.+.|.| +...+++.+.|..|||+|..+.
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~ 534 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK 534 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch
Confidence 1 22699999998 4446888899999999998554
No 105
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=2.2e-25 Score=246.49 Aligned_cols=257 Identities=19% Similarity=0.337 Sum_probs=220.3
Q ss_pred cccCCCCCccceEeecCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCC
Q 001790 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1012)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1012)
+|+............+|.+.|++++|..-+. +|++|+.|.+++|||..+|++... +.+|.
T Consensus 232 ~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~-~lvsgS~D~t~rvWd~~sg~C~~~-------------------l~gh~ 291 (537)
T KOG0274|consen 232 LWDLNNGYLILTRLVGHFGGVWGLAFPSGGD-KLVSGSTDKTERVWDCSTGECTHS-------------------LQGHT 291 (537)
T ss_pred EeecccceEEEeeccCCCCCceeEEEecCCC-EEEEEecCCcEEeEecCCCcEEEE-------------------ecCCC
Confidence 5665554444444556999999999997444 899999999999999999999864 88999
Q ss_pred cceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCc
Q 001790 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (1012)
Q Consensus 407 ~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~ 485 (1012)
+.|.++..- +.++++|+.|.+|++|++.++.++. .+.+|.++|.++... +. ++++|+.|++|++|| ..++
T Consensus 292 stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~---l~~~h~~~V~~v~~~--~~--~lvsgs~d~~v~VW~~~~~~ 362 (537)
T KOG0274|consen 292 SSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLN---LLRGHTGPVNCVQLD--EP--LLVSGSYDGTVKVWDPRTGK 362 (537)
T ss_pred ceEEEEEcc--CceEeeccCCceEEEEeccCcceEE---EeccccccEEEEEec--CC--EEEEEecCceEEEEEhhhce
Confidence 999999874 5688889999999999999998887 577799999999997 55 899999999999999 9999
Q ss_pred ceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCC-CceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCC
Q 001790 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1012)
Q Consensus 486 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 564 (1012)
++.++.+|...|.++.+... ..+++|+.|++|++||+++. ++...+..|..-+..+. ..++.|++++. |+
T Consensus 363 cl~sl~gH~~~V~sl~~~~~---~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~--~~~~~Lvs~~a----D~ 433 (537)
T KOG0274|consen 363 CLKSLSGHTGRVYSLIVDSE---NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLL--LRDNFLVSSSA----DG 433 (537)
T ss_pred eeeeecCCcceEEEEEecCc---ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccc--cccceeEeccc----cc
Confidence 99999999999999977432 68999999999999999999 88889998888775554 46778999885 89
Q ss_pred cEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEE
Q 001790 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST 623 (1012)
Q Consensus 565 ~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (1012)
.|++||..++++++++.+.+...+..+++. ...+++++.||.+++||+++++....+
T Consensus 434 ~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 434 TIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred cEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 999999999999999998533367777665 578899999999999999999888766
No 106
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=6e-25 Score=244.20 Aligned_cols=248 Identities=16% Similarity=0.214 Sum_probs=203.1
Q ss_pred cCCCcceEEEEEccCCCEEEEEE--CCCeEEEEeecCCC---------cceeeeeeeccccCeEEEEEeCCCCceEEEEE
Q 001790 403 KDVPISVSRVAWSPDGNYVGVAF--TKHLIQLYSYAGSN---------DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC 471 (1012)
Q Consensus 403 ~~h~~~V~~v~~spdg~~las~~--~d~~v~vwd~~~~~---------~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~ 471 (1012)
..++..|.+|..+|||..+|||+ .|+.++||+.+.-- ..+...+...|.+.|+|+.|+|||+ +||+|
T Consensus 10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~--~lAsG 87 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGS--YLASG 87 (942)
T ss_pred ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCC--eEeec
Confidence 33567899999999999999999 99999999875311 1122335678999999999999999 89999
Q ss_pred cCCCcEEEEeCCC-------------------cceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCcee
Q 001790 472 GDDKLIKVWELSG-------------------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV 532 (1012)
Q Consensus 472 ~~d~~v~vwd~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~ 532 (1012)
++|+.|.||+..+ +.+..+.+|.+.|..++|+| ++.++++++.|++|.+|+..+.+...
T Consensus 88 SDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp--~~~~lvS~s~DnsViiwn~~tF~~~~ 165 (942)
T KOG0973|consen 88 SDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP--DDSLLVSVSLDNSVIIWNAKTFELLK 165 (942)
T ss_pred cCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC--CccEEEEecccceEEEEccccceeee
Confidence 9999999999331 24567899999999999977 66899999999999999999998888
Q ss_pred eecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCC-----CcceEEEEecCCCEEEEEe---
Q 001790 533 DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK-----KSNGVVQFDTTQNHFLAVG--- 604 (1012)
Q Consensus 533 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~--- 604 (1012)
.+.+|...|..+.|.|-|+++++-+ .|++|++|.+.+....+.+..+.. ..+..+.|+|||.+|++..
T Consensus 166 vl~~H~s~VKGvs~DP~Gky~ASqs----dDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n 241 (942)
T KOG0973|consen 166 VLRGHQSLVKGVSWDPIGKYFASQS----DDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVN 241 (942)
T ss_pred eeecccccccceEECCccCeeeeec----CCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhcc
Confidence 9999999999999999999999998 599999999888777777665433 2356789999999999863
Q ss_pred -CCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecC-----CC------------EEEEEECCCcEEEEEccC
Q 001790 605 -EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE-----GN------------LLAVTTADNGFKILANAI 660 (1012)
Q Consensus 605 -~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~-----g~------------~l~~~~~dg~i~iwd~~~ 660 (1012)
.-..+.|.+..+.+.-..+-. |..++.++.|+|. .. .+|+|+.|+.|.||....
T Consensus 242 ~~~~~~~IieR~tWk~~~~LvG--H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~ 313 (942)
T KOG0973|consen 242 GGKSTIAIIERGTWKVDKDLVG--HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL 313 (942)
T ss_pred CCcceeEEEecCCceeeeeeec--CCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence 345788888877776666654 4558999999982 11 567888888888887643
No 107
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.6e-25 Score=211.31 Aligned_cols=295 Identities=13% Similarity=0.182 Sum_probs=241.3
Q ss_pred cceEeec-CCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEE
Q 001790 336 TVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1012)
Q Consensus 336 ~~~~~~~-h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 414 (1012)
.+.+.+. |++.|+.++-..... ++.+++.|.+.+||.+++|.++.. +.||.+.|.+|+|
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsikf 198 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIKF 198 (481)
T ss_pred eehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEEe
Confidence 3444444 999999999887777 899999999999999999999865 8899999999999
Q ss_pred ccCCCEEEEEECCCeEEEEeec------C--------CC----------------------cc-eeeeeeeccccCeEEE
Q 001790 415 SPDGNYVGVAFTKHLIQLYSYA------G--------SN----------------------DL-RQHSQIDAHVGAVNDL 457 (1012)
Q Consensus 415 spdg~~las~~~d~~v~vwd~~------~--------~~----------------------~~-~~~~~l~~h~~~v~~l 457 (1012)
++.+.++++++.|++..||... . ++ .+ .....+.+|.+.|.++
T Consensus 199 h~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~ 278 (481)
T KOG0300|consen 199 HNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSAC 278 (481)
T ss_pred ccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEeh
Confidence 9999999999999999999721 1 00 01 1233578999999999
Q ss_pred EEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCC-ceeeec
Q 001790 458 AFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG-SRVDYD 535 (1012)
Q Consensus 458 ~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~ 535 (1012)
.|...|+ .+++++.|.+..+|| .+|.++..+.||....+.++-+|. ..++++++.|.+.++||++..- ....+.
T Consensus 279 dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt--QrLVvTsSrDtTFRLWDFReaI~sV~VFQ 354 (481)
T KOG0300|consen 279 DWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPT--QRLVVTSSRDTTFRLWDFREAIQSVAVFQ 354 (481)
T ss_pred hhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCCc--ceEEEEeccCceeEeccchhhcceeeeec
Confidence 9999999 799999999999999 999999999999999999998874 4799999999999999998533 345789
Q ss_pred CCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCe-eeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeC
Q 001790 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1012)
Q Consensus 536 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 614 (1012)
+|...|+++.|..+.+ +++++ .|.+|++||+++.+ ++.++... .+++.++++..+..++.--.+..|++||+
T Consensus 355 GHtdtVTS~vF~~dd~-vVSgS----DDrTvKvWdLrNMRsplATIRtd--S~~NRvavs~g~~iIAiPhDNRqvRlfDl 427 (481)
T KOG0300|consen 355 GHTDTVTSVVFNTDDR-VVSGS----DDRTVKVWDLRNMRSPLATIRTD--SPANRVAVSKGHPIIAIPHDNRQVRLFDL 427 (481)
T ss_pred ccccceeEEEEecCCc-eeecC----CCceEEEeeeccccCcceeeecC--CccceeEeecCCceEEeccCCceEEEEec
Confidence 9999999999987764 66666 59999999998754 45555543 37888999988888888888999999999
Q ss_pred CCCeeEEEE--ecCCCCCCcceeEeecCC--CEEEEEECCCcEEEEEccCC
Q 001790 615 DNVNILTST--DAEGGLPNLPRLRFSKEG--NLLAVTTADNGFKILANAIG 661 (1012)
Q Consensus 615 ~~~~~~~~~--~~~~~~~~v~~v~~s~~g--~~l~~~~~dg~i~iwd~~~~ 661 (1012)
+...+.... ...+|..-|+|++|..+. .-|++++.|..+.-|.+...
T Consensus 428 nG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 428 NGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred CCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 765543322 334555578999998653 35788999999999987653
No 108
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.6e-25 Score=223.12 Aligned_cols=284 Identities=14% Similarity=0.185 Sum_probs=230.4
Q ss_pred CCCcEEEEEEccCCCe-EEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCC
Q 001790 537 PGHWCTTMLYSADGSR-LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1012)
Q Consensus 537 ~~~~v~~~~~s~~~~~-l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 615 (1012)
....|.+++|+|...+ +++.+ ...+.+|+..+....+++....+ .+.+++|..||..+++|...|.|++||+.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-----S~rvqly~~~~~~~~k~~srFk~-~v~s~~fR~DG~LlaaGD~sG~V~vfD~k 98 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-----SVRVQLYSSVTRSVRKTFSRFKD-VVYSVDFRSDGRLLAAGDESGHVKVFDMK 98 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-----ccEEEEEecchhhhhhhHHhhcc-ceeEEEeecCCeEEEccCCcCcEEEeccc
Confidence 3457999999996543 44443 56799999999888888877766 89999999999999999999999999977
Q ss_pred CCeeEEEEecCCCCCCcceeEeec-CCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeeccccccccc
Q 001790 616 NVNILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVS 694 (1012)
Q Consensus 616 ~~~~~~~~~~~~~~~~v~~v~~s~-~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~ 694 (1012)
+...+..+..+ ..++..+.|+| ++..+++|++|+.+++||+.+... ..
T Consensus 99 ~r~iLR~~~ah--~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~---------------------------- 147 (487)
T KOG0310|consen 99 SRVILRQLYAH--QAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QA---------------------------- 147 (487)
T ss_pred cHHHHHHHhhc--cCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EE----------------------------
Confidence 76566666654 45899999999 566778888899999999877521 11
Q ss_pred cCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEec
Q 001790 695 SGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTN 774 (1012)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 774 (1012)
.+ .+|.+.|.+.+++|
T Consensus 148 -------------------------------------------------------------~l---~~htDYVR~g~~~~ 163 (487)
T KOG0310|consen 148 -------------------------------------------------------------EL---SGHTDYVRCGDISP 163 (487)
T ss_pred -------------------------------------------------------------Ee---cCCcceeEeecccc
Confidence 11 22888999999998
Q ss_pred Ccc-eEEEeeccCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEEEcCCc
Q 001790 775 SAV-GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGK 853 (1012)
Q Consensus 775 ~g~-~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~sdg~ 853 (1012)
... .+++|+-||.|++||..... . .....+|..+|..+.+-|.|..+|+++.+.
T Consensus 164 ~~~hivvtGsYDg~vrl~DtR~~~---------------------~----~v~elnhg~pVe~vl~lpsgs~iasAgGn~ 218 (487)
T KOG0310|consen 164 ANDHIVVTGSYDGKVRLWDTRSLT---------------------S----RVVELNHGCPVESVLALPSGSLIASAGGNS 218 (487)
T ss_pred CCCeEEEecCCCceEEEEEeccCC---------------------c----eeEEecCCCceeeEEEcCCCCEEEEcCCCe
Confidence 654 67888889999999864321 0 011124899999999999999999999999
Q ss_pred EEEEEcCCCe-EEEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeEEecccCCCeEEEEEcCCCCEEEE
Q 001790 854 ISLFNMMTFK-VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVS 932 (1012)
Q Consensus 854 i~lwd~~~~~-~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s 932 (1012)
|++||+.+|. .+..+..|...|+|+++.. ++..|++|+-|+.|++||+.+.+.+..+. -.++|.+++.+||++.++.
T Consensus 219 vkVWDl~~G~qll~~~~~H~KtVTcL~l~s-~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~vi 296 (487)
T KOG0310|consen 219 VKVWDLTTGGQLLTSMFNHNKTVTCLRLAS-DSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVI 296 (487)
T ss_pred EEEEEecCCceehhhhhcccceEEEEEeec-CCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEE
Confidence 9999999554 4445555999999999999 88999999999999999999999999887 6789999999999999999
Q ss_pred EeCCCcEEEEeCCCCC
Q 001790 933 SGADAQLCVWSIDTWE 948 (1012)
Q Consensus 933 ~s~Dg~i~vwd~~~~~ 948 (1012)
|..||.+.+-+....+
T Consensus 297 GmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 297 GMSNGLVSIRRREVKK 312 (487)
T ss_pred ecccceeeeehhhccc
Confidence 9999998877555443
No 109
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.7e-24 Score=206.26 Aligned_cols=312 Identities=15% Similarity=0.140 Sum_probs=208.3
Q ss_pred ceeccCCCcceEEEEEccCCCEEEEEECCCeEEEEeecCCC-----cceeeeeeeccccCeEEEEEeCCCCceEEEEEcC
Q 001790 399 ASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN-----DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD 473 (1012)
Q Consensus 399 ~~~~~~h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~-----~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~ 473 (1012)
...+++|.+.|++++||.||++||+++.|++|+||+++.-. +++.. + .-+.-+.++|+||-+. +++++-.
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n--v--e~dhpT~V~FapDc~s-~vv~~~~ 153 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN--V--EYDHPTRVVFAPDCKS-VVVSVKR 153 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc--c--cCCCceEEEECCCcce-EEEEEcc
Confidence 34589999999999999999999999999999999997632 12211 1 1124678899999986 5666667
Q ss_pred CCcEEEEeCCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeE
Q 001790 474 DKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1012)
Q Consensus 474 d~~v~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 553 (1012)
..++++|....+.-..+..| .+- ||--. ....|...+..+-....+++|
T Consensus 154 g~~l~vyk~~K~~dG~~~~~-----~v~---------------------~D~~~-----f~~kh~v~~i~iGiA~~~k~i 202 (420)
T KOG2096|consen 154 GNKLCVYKLVKKTDGSGSHH-----FVH---------------------IDNLE-----FERKHQVDIINIGIAGNAKYI 202 (420)
T ss_pred CCEEEEEEeeecccCCCCcc-----ccc---------------------ccccc-----cchhcccceEEEeecCCceEE
Confidence 77899987222111111111 110 11000 001123344445556677788
Q ss_pred EEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCC---CC---eeEEEEecCC
Q 001790 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD---NV---NILTSTDAEG 627 (1012)
Q Consensus 554 ~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~---~~---~~~~~~~~~~ 627 (1012)
++++ .|..|.+|+++ |+.+..+..... ..+..+.+|+|+++++++..-.|++|..- .| +..+.+...+
T Consensus 203 msas----~dt~i~lw~lk-Gq~L~~idtnq~-~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkG 276 (420)
T KOG2096|consen 203 MSAS----LDTKICLWDLK-GQLLQSIDTNQS-SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKG 276 (420)
T ss_pred EEec----CCCcEEEEecC-Cceeeeeccccc-cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheecc
Confidence 8887 47888999988 888777766554 55668999999999999999999999863 22 2345566778
Q ss_pred CCCCcceeEeecCCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeeccccccccccCCCCCccccccC
Q 001790 628 GLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSS 707 (1012)
Q Consensus 628 ~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~ 707 (1012)
|...|..++|+++.+.+++.+.||.+++||..-....-+ |...
T Consensus 277 H~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~q---------------------Dpk~---------------- 319 (420)
T KOG2096|consen 277 HQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQ---------------------DPKI---------------- 319 (420)
T ss_pred chhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCC---------------------CchH----------------
Confidence 888999999999999999999999999999753211000 0000
Q ss_pred CCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeeccCe
Q 001790 708 PVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGV 787 (1012)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~ 787 (1012)
++.. ..|. ....+.-..++.+|.|+.|+.+.. ..
T Consensus 320 ------------------------------Lk~g--------------~~pl-~aag~~p~RL~lsP~g~~lA~s~g-s~ 353 (420)
T KOG2096|consen 320 ------------------------------LKEG--------------SAPL-HAAGSEPVRLELSPSGDSLAVSFG-SD 353 (420)
T ss_pred ------------------------------hhcC--------------Ccch-hhcCCCceEEEeCCCCcEEEeecC-Cc
Confidence 0000 0000 002223347899999996665543 36
Q ss_pred eEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEEEcCCcEEEEEc
Q 001790 788 QKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNM 859 (1012)
Q Consensus 788 i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~sdg~i~lwd~ 859 (1012)
+++|.-+ +|......-. .|...|.+++|+++|+++|+++|..++++.-
T Consensus 354 l~~~~se----------------------~g~~~~~~e~--~h~~~Is~is~~~~g~~~atcGdr~vrv~~n 401 (420)
T KOG2096|consen 354 LKVFASE----------------------DGKDYPELED--IHSTTISSISYSSDGKYIATCGDRYVRVIRN 401 (420)
T ss_pred eEEEEcc----------------------cCccchhHHH--hhcCceeeEEecCCCcEEeeecceeeeeecC
Confidence 6666432 2322211111 2889999999999999999999999988863
No 110
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=3.1e-24 Score=204.79 Aligned_cols=267 Identities=17% Similarity=0.261 Sum_probs=212.8
Q ss_pred CCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEE
Q 001790 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1012)
Q Consensus 344 ~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 423 (1012)
.+.|+.+.|+|.+.. |++++-||++++||+....... .-.|..++.+++|.+ ...+++
T Consensus 13 ~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~--------------------~~~~~~plL~c~F~d-~~~~~~ 70 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKL--------------------KFKHGAPLLDCAFAD-ESTIVT 70 (323)
T ss_pred hhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhhh--------------------heecCCceeeeeccC-CceEEE
Confidence 568999999999885 5556789999999998764332 223899999999986 567889
Q ss_pred EECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCCccCEEEEec
Q 001790 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICP 502 (1012)
Q Consensus 424 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~v~~~~~ 502 (1012)
|+.||.|+.+|+.++.... +..|..+|.|+.+++... .+++||.|++|++|| ........+. ....|.++..
T Consensus 71 G~~dg~vr~~Dln~~~~~~----igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v 143 (323)
T KOG1036|consen 71 GGLDGQVRRYDLNTGNEDQ----IGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV 143 (323)
T ss_pred eccCceEEEEEecCCccee----eccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEec
Confidence 9999999999999987554 778999999999998777 799999999999999 5444444443 3448998876
Q ss_pred cccCCceEEEEEecCCeEEEEEcCCCCceeeecC--CCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCC----ee
Q 001790 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA--PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG----TI 576 (1012)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~----~~ 576 (1012)
.++.|+.|+.+..+.+||+++......... -.-.+.++++-|++.-.++++. +|.|.+=.+... ..
T Consensus 144 ----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi----eGRVavE~~d~s~~~~sk 215 (323)
T KOG1036|consen 144 ----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI----EGRVAVEYFDDSEEAQSK 215 (323)
T ss_pred ----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee----cceEEEEccCCchHHhhh
Confidence 346899999999999999998766553222 2347899999998877777774 788877555544 34
Q ss_pred eeeecCCCC--------CcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEE
Q 001790 577 KRTYAGFRK--------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1012)
Q Consensus 577 ~~~~~~~~~--------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~ 648 (1012)
...|..|.. .+|++++|+|-.+.|++|+.||.|.+||+.+.+.+..+... ...|..++|+.+|..||+++
T Consensus 216 kyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 216 KYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred ceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCCeEEEEe
Confidence 455666543 25889999999999999999999999999999888887654 33699999999999999987
Q ss_pred C
Q 001790 649 A 649 (1012)
Q Consensus 649 ~ 649 (1012)
.
T Consensus 294 s 294 (323)
T KOG1036|consen 294 S 294 (323)
T ss_pred c
Confidence 5
No 111
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=2.9e-25 Score=223.76 Aligned_cols=292 Identities=15% Similarity=0.223 Sum_probs=234.7
Q ss_pred cceEeecCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEc
Q 001790 336 TVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1012)
Q Consensus 336 ~~~~~~~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 415 (1012)
..+.++.|++-|.++.+|...+ .+.||+ .|.|+|||+...... .++. +.. .....+-|.++..+
T Consensus 411 rq~~tL~HGEvVcAvtIS~~tr-hVyTgG-kgcVKVWdis~pg~k--~Pvs-----------qLd-cl~rdnyiRSckL~ 474 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISQPGNK--SPVS-----------QLD-CLNRDNYIRSCKLL 474 (705)
T ss_pred HhhhhhccCcEEEEEEecCCcc-eeEecC-CCeEEEeeccCCCCC--Cccc-----------ccc-ccCcccceeeeEec
Confidence 4567888999999999999999 588987 689999999654221 1111 111 22246789999999
Q ss_pred cCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCCc
Q 001790 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (1012)
Q Consensus 416 pdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~ 494 (1012)
|||+.|++|+.-.++.|||+..... +....+....-..++++.+||.+ +.++|..||.|.||| .+...++.|+||+
T Consensus 475 pdgrtLivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCC
Confidence 9999999999999999999987542 22223444455688899999999 888888999999999 7888899999999
Q ss_pred cCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCC
Q 001790 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1012)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~ 574 (1012)
+.+.||.++. +|..|.+|+-|++||.||++.+........ ...|.++..+|.+.++++|. +++.+.+.....
T Consensus 552 DGascIdis~--dGtklWTGGlDntvRcWDlregrqlqqhdF-~SQIfSLg~cP~~dWlavGM----ens~vevlh~sk- 623 (705)
T KOG0639|consen 552 DGASCIDISK--DGTKLWTGGLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYCPTGDWLAVGM----ENSNVEVLHTSK- 623 (705)
T ss_pred CCceeEEecC--CCceeecCCCccceeehhhhhhhhhhhhhh-hhhheecccCCCccceeeec----ccCcEEEEecCC-
Confidence 9999999855 778999999999999999998776655432 44799999999999999998 477777766433
Q ss_pred eeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEE
Q 001790 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (1012)
Q Consensus 575 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~ 654 (1012)
.....+..|.. .|.++.|.+.|+++++.+.|+.+-.|....|..+..... ...|.++.+|.|.+++++|+.|..-.
T Consensus 624 p~kyqlhlheS-cVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE---~SsVlsCDIS~ddkyIVTGSGdkkAT 699 (705)
T KOG0639|consen 624 PEKYQLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSCDISFDDKYIVTGSGDKKAT 699 (705)
T ss_pred ccceeeccccc-EEEEEEecccCceeeecCchhhhhhccCccccceeeccc---cCcceeeeeccCceEEEecCCCcceE
Confidence 33334444544 899999999999999999999999999999887766643 34799999999999999999998888
Q ss_pred EEEc
Q 001790 655 ILAN 658 (1012)
Q Consensus 655 iwd~ 658 (1012)
+|.+
T Consensus 700 VYeV 703 (705)
T KOG0639|consen 700 VYEV 703 (705)
T ss_pred EEEE
Confidence 8764
No 112
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=1.1e-24 Score=220.61 Aligned_cols=305 Identities=16% Similarity=0.228 Sum_probs=234.2
Q ss_pred CceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCe----eeeeecCCCCCcceEEEEecCCCEEEEEe
Q 001790 529 GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT----IKRTYAGFRKKSNGVVQFDTTQNHFLAVG 604 (1012)
Q Consensus 529 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 604 (1012)
.....+..+...|.++++.|.|..+++|+. |..|++||..... ..+.+.......|.++.|++.+..|++.+
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~----Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvs 233 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFVSGSL----DYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVS 233 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceeeeccc----cceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEe
Confidence 344556677778999999999999999996 9999999987432 23344444445799999999999999999
Q ss_pred CCCcEEEEeCCCCeeEEEEe----------cCCCCCCcceeEeecC-CCEEEEEECCCcEEEEEccCCceeeecccCCcc
Q 001790 605 EDSQIKFWDMDNVNILTSTD----------AEGGLPNLPRLRFSKE-GNLLAVTTADNGFKILANAIGLRSLRAVENPPF 673 (1012)
Q Consensus 605 ~dg~i~iwd~~~~~~~~~~~----------~~~~~~~v~~v~~s~~-g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 673 (1012)
.....+++|....+...... ..+|...++|.+|+|+ ...+.+++.||++|+|++.+.+...+.+.....
T Consensus 234 g~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~ 313 (641)
T KOG0772|consen 234 GSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA 313 (641)
T ss_pred cCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC
Confidence 99999999987766554433 3467778999999995 567889999999999999988766666666666
Q ss_pred ccccCccceeeeccccccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceE
Q 001790 674 EALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCR 753 (1012)
Q Consensus 674 ~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~ 753 (1012)
...+.++..++|++||+.+ ++|..||.|.+|+..........
T Consensus 314 ~g~Rv~~tsC~~nrdg~~i-------------------------------------Aagc~DGSIQ~W~~~~~~v~p~~- 355 (641)
T KOG0772|consen 314 GGKRVPVTSCAWNRDGKLI-------------------------------------AAGCLDGSIQIWDKGSRTVRPVM- 355 (641)
T ss_pred CCcccCceeeecCCCcchh-------------------------------------hhcccCCceeeeecCCcccccce-
Confidence 6667778888888777665 57778899999997432211111
Q ss_pred EEecCCCCCCCC--ceEEEEEecCcceEEEeeccCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCC
Q 001790 754 LVTMPESTDTSS--KVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLE 831 (1012)
Q Consensus 754 ~~~~~~~~~~~~--~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (1012)
.+. ..|.. .|+++.||+||++|++-+.|+++++||+....... .. ..+....
T Consensus 356 --~vk--~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL-------------~~---------~tgL~t~ 409 (641)
T KOG0772|consen 356 --KVK--DAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPL-------------NV---------RTGLPTP 409 (641)
T ss_pred --Eee--eccCCCCceeEEEeccccchhhhccCCCceeeeeccccccch-------------hh---------hcCCCcc
Confidence 111 33555 89999999999999999999999999987543200 01 1111245
Q ss_pred CCEeEEEEeeCCCEEEEEc-------CCcEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEc
Q 001790 832 EAVPCIALSKNDSYVMSAT-------GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNV 902 (1012)
Q Consensus 832 ~~v~~~~~s~dg~~la~~s-------dg~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~ 902 (1012)
.+-+.++||||.++|++|. .|++.+||..+.+.+..+.-....|..+.|+| .=+.|.+|+.||+++||=-
T Consensus 410 ~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whp-kLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 410 FPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHP-KLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred CCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecc-hhhheeeecCCCceEEEEC
Confidence 5667899999999999984 26799999999999999887778899999999 6666777889999998743
No 113
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4e-24 Score=203.81 Aligned_cols=304 Identities=13% Similarity=0.189 Sum_probs=220.1
Q ss_pred eeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCcee----eecCCCCcEEEEEEccCCCeEEEeeecCCCC
Q 001790 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----DYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1012)
Q Consensus 488 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 563 (1012)
..+++|.+.|++++|+. ||+.|++++.|+.|++|+++...... .....-+..+.+.|+||-+-+++... ..
T Consensus 80 ~~LKgH~~~vt~~~FsS--dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~---~g 154 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSS--DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVK---RG 154 (420)
T ss_pred hhhhccCCceeeeEEcC--CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEc---cC
Confidence 46789999999999965 78999999999999999998743321 22233346789999999998877665 46
Q ss_pred CcEEEEeCCCC---eeeee--------ecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCc
Q 001790 564 SFLVEWNESEG---TIKRT--------YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL 632 (1012)
Q Consensus 564 ~~i~lwd~~~~---~~~~~--------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1012)
..+++|.+... ..... |...+.-.+..+-+...+.+|++++.|..|.+|+++ |+.+..+..... .-
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~--~n 231 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQS--SN 231 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccc--cc
Confidence 78899876432 11111 111112233445556677899999999999999998 888888765433 45
Q ss_pred ceeEeecCCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeeccccccccccCCCCCccccccCCCCCC
Q 001790 633 PRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPS 712 (1012)
Q Consensus 633 ~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~ 712 (1012)
+..+.||+|+++|+++..-.|++|.. .|..||..-
T Consensus 232 ~~aavSP~GRFia~~gFTpDVkVwE~-------------------------~f~kdG~fq-------------------- 266 (420)
T KOG2096|consen 232 YDAAVSPDGRFIAVSGFTPDVKVWEP-------------------------IFTKDGTFQ-------------------- 266 (420)
T ss_pred cceeeCCCCcEEEEecCCCCceEEEE-------------------------EeccCcchh--------------------
Confidence 78899999999999999989999974 223333211
Q ss_pred ccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeeccCeeEeee
Q 001790 713 PIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 792 (1012)
Q Consensus 713 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~ 792 (1012)
...+++.+ .+|.+.|..++|+++..++++++.||.+++||
T Consensus 267 -----------------------ev~rvf~L-----------------kGH~saV~~~aFsn~S~r~vtvSkDG~wriwd 306 (420)
T KOG2096|consen 267 -----------------------EVKRVFSL-----------------KGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWD 306 (420)
T ss_pred -----------------------hhhhhhee-----------------ccchhheeeeeeCCCcceeEEEecCCcEEEee
Confidence 22233433 23999999999999999999999999999999
Q ss_pred ccccccC-CCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEEEcCCcEEEEEcCCCeEEEEEc-C
Q 001790 793 WHRNEQN-PSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFM-S 870 (1012)
Q Consensus 793 ~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~-~ 870 (1012)
.+-.-.. .+.+ -++.|. ..+. .....-..+++||+|+.||.+....+++|..++|+....+. .
T Consensus 307 tdVrY~~~qDpk----------~Lk~g~---~pl~--aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~ 371 (420)
T KOG2096|consen 307 TDVRYEAGQDPK----------ILKEGS---APLH--AAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDI 371 (420)
T ss_pred ccceEecCCCch----------HhhcCC---cchh--hcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHh
Confidence 7642110 0000 011111 0111 12333447999999999999999999999999988776665 5
Q ss_pred CCCCeeEEEEecCCCcEEEEEeCCCeEEEEE
Q 001790 871 PPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 901 (1012)
Q Consensus 871 ~~~~i~~l~~sp~d~~~las~~~dg~v~iwd 901 (1012)
|.+.|++++|++ +|+++++++ |+.+++..
T Consensus 372 h~~~Is~is~~~-~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 372 HSTTISSISYSS-DGKYIATCG-DRYVRVIR 400 (420)
T ss_pred hcCceeeEEecC-CCcEEeeec-ceeeeeec
Confidence 889999999999 999999887 77888876
No 114
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=8.8e-24 Score=234.47 Aligned_cols=251 Identities=14% Similarity=0.196 Sum_probs=192.2
Q ss_pred EECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCC-CCceEEEEEcCCCcEEEEe-CCCc--------ceeeecCC
Q 001790 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP-NKLLCVVTCGDDKLIKVWE-LSGR--------KLFNFEGH 493 (1012)
Q Consensus 424 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~-~~~~~l~s~~~d~~v~vwd-~~~~--------~~~~~~~h 493 (1012)
|+.++.|++|+......+ ..+.+|.+.|.+++|+|+ +. +|++|+.|++|++|| .++. ++..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~~v---~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPV---IKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCceE---EEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 567888999998765433 368899999999999997 56 899999999999999 4432 34567899
Q ss_pred ccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCC
Q 001790 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1012)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~ 573 (1012)
...|.+++|+|... .++++++.|++|++||++++.....+. +...|.+++|+|+|.+|++++ .|+.|++||+++
T Consensus 125 ~~~V~sVaf~P~g~-~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s----~D~~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMNY-YIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTC----VGKHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCCC-eEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEe----cCCEEEEEECCC
Confidence 99999999988542 456799999999999999887766665 456899999999999999887 489999999999
Q ss_pred CeeeeeecCCCCCc----ceEEEEecCCCEEEEEeCCC----cEEEEeCCC-CeeEEEEecCCCCCCcceeEeecCCCEE
Q 001790 574 GTIKRTYAGFRKKS----NGVVQFDTTQNHFLAVGEDS----QIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (1012)
Q Consensus 574 ~~~~~~~~~~~~~~----v~~~~~s~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~g~~l 644 (1012)
++.+..+.+|.+.. +....|++++.++++++.|+ .|++||++. .+++.....+.....+......++|.++
T Consensus 199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence 99999999887622 12234568899999988764 799999985 5666666555543333333334568999
Q ss_pred EEEECCCcEEEEEccCCceeeecccCCccccccCccceeeeccccc
Q 001790 645 AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSAS 690 (1012)
Q Consensus 645 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~ 690 (1012)
++|+.|+.|++|++..+. ...+. ......++..++|.|.-.
T Consensus 279 lsGkGD~tIr~~e~~~~~--~~~l~---~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLGS--IRKVN---EYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred EEEECCCeEEEEEccCCc--EEeec---ccccCCCccceEEccccc
Confidence 999999999999997652 22221 112446677888887643
No 115
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.6e-24 Score=205.57 Aligned_cols=276 Identities=16% Similarity=0.163 Sum_probs=214.7
Q ss_pred CCcceEEEEEcc-CCCEEEEEECCCeEEEEeecCC-CcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-
Q 001790 405 VPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGS-NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE- 481 (1012)
Q Consensus 405 h~~~V~~v~~sp-dg~~las~~~d~~v~vwd~~~~-~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd- 481 (1012)
..+.|.+++||| ...+++.|+-|++||+|+++.. .... .....|.++|.+++|+.||. .+++|+.|+.+++||
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~--ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP--KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLWDL 101 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc--hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEEEc
Confidence 567899999999 6667778999999999999873 3222 24567999999999999998 899999999999999
Q ss_pred CCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCC
Q 001790 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKD 561 (1012)
Q Consensus 482 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 561 (1012)
.++ .+..+..|.++|..+.|-+..+-..|++|+.|.+|+.||.+......++..++. +.++..- ..+++++.
T Consensus 102 ~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR-vYa~Dv~--~pm~vVat---- 173 (347)
T KOG0647|consen 102 ASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER-VYAADVL--YPMAVVAT---- 173 (347)
T ss_pred cCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce-eeehhcc--CceeEEEe----
Confidence 566 667788899999999998776667899999999999999998888777766553 4444432 33555555
Q ss_pred CCCcEEEEeCCCCeee-eeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCe--eEEEEecCCC-------CCC
Q 001790 562 GDSFLVEWNESEGTIK-RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN--ILTSTDAEGG-------LPN 631 (1012)
Q Consensus 562 ~~~~i~lwd~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~-------~~~ 631 (1012)
.+..|.+|+++.+... +.....-+..+.+++..++....+.|+-+|.+.|..+..+. .-..+..|.. ...
T Consensus 174 a~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYa 253 (347)
T KOG0647|consen 174 AERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYA 253 (347)
T ss_pred cCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEE
Confidence 3888999999876543 23333334468899999999888999999999999988763 3333333331 335
Q ss_pred cceeEeecCCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeeccccccccccCCC
Q 001790 632 LPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTP 698 (1012)
Q Consensus 632 v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~ 698 (1012)
|++++|+|....|++++.||++.+||-....++. ....+..+|.+.+|+.+|.+++++.+-
T Consensus 254 VNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk------~s~~~~qpItcc~fn~~G~ifaYA~gY 314 (347)
T KOG0647|consen 254 VNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLK------TSETHPQPITCCSFNRNGSIFAYALGY 314 (347)
T ss_pred ecceEeecccceEEEecCCceEEEecchhhhhhh------ccCcCCCccceeEecCCCCEEEEEeec
Confidence 7899999999999999999999999976542221 233456789999999999999876553
No 116
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.6e-25 Score=202.64 Aligned_cols=253 Identities=20% Similarity=0.299 Sum_probs=208.5
Q ss_pred eeccCCCcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeC--CCCceEEEEEcCCCcE
Q 001790 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY--PNKLLCVVTCGDDKLI 477 (1012)
Q Consensus 400 ~~~~~h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~--~~~~~~l~s~~~d~~v 477 (1012)
.+-..|.+.|..+...--|++||||+.|++|+|+.+........+.+|.||.++|+.++|.. -|. +||+++.||.|
T Consensus 5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkV 82 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKV 82 (299)
T ss_pred ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceE
Confidence 34667999999998888999999999999999999998777667778999999999999987 677 89999999999
Q ss_pred EEEe-CCCc--ceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCc---eeeecCCCCcEEEEEEccC--
Q 001790 478 KVWE-LSGR--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS---RVDYDAPGHWCTTMLYSAD-- 549 (1012)
Q Consensus 478 ~vwd-~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~-- 549 (1012)
.||. ..|+ .......|...|++++|.|.+-|-.|++++.||.|.+.+++.... ......|.-.|++++|.|.
T Consensus 83 IiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~ 162 (299)
T KOG1332|consen 83 IIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASA 162 (299)
T ss_pred EEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCC
Confidence 9999 5553 345667899999999999998899999999999999999887622 2234567778999999986
Q ss_pred -C-----------CeEEEeeecCCCCCcEEEEeCCCCe--eeeeecCCCCCcceEEEEecCC----CEEEEEeCCCcEEE
Q 001790 550 -G-----------SRLFSCGTSKDGDSFLVEWNESEGT--IKRTYAGFRKKSNGVVQFDTTQ----NHFLAVGEDSQIKF 611 (1012)
Q Consensus 550 -~-----------~~l~~~~~~~~~~~~i~lwd~~~~~--~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~dg~i~i 611 (1012)
| +.|++++ .|..|++|+..+++ ..+++.+|.+ -++.+++.|.- ..+++++.||++.|
T Consensus 163 ~g~~~~~~~~~~~krlvSgG----cDn~VkiW~~~~~~w~~e~~l~~H~d-wVRDVAwaP~~gl~~s~iAS~SqDg~viI 237 (299)
T KOG1332|consen 163 PGSLVDQGPAAKVKRLVSGG----CDNLVKIWKFDSDSWKLERTLEGHKD-WVRDVAWAPSVGLPKSTIASCSQDGTVII 237 (299)
T ss_pred CccccccCcccccceeeccC----CccceeeeecCCcchhhhhhhhhcch-hhhhhhhccccCCCceeeEEecCCCcEEE
Confidence 5 5688888 49999999988764 4456888887 89999999964 57999999999999
Q ss_pred EeCCCC-eeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEcc
Q 001790 612 WDMDNV-NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1012)
Q Consensus 612 wd~~~~-~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~ 659 (1012)
|..... +.......+.....+..+.||..|+.|++++.|+.+.+|.-.
T Consensus 238 wt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 238 WTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 987632 222222222234478999999999999999999999999754
No 117
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=4.2e-24 Score=212.28 Aligned_cols=238 Identities=16% Similarity=0.255 Sum_probs=211.5
Q ss_pred cceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCc
Q 001790 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (1012)
Q Consensus 407 ~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~ 485 (1012)
..+.++...|....+++|+.|.++.++|..+++.+. ++.||...|+.+.|+|+.. .+++++.|..|+||. ....
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~---~~~Gh~kki~~v~~~~~~~--~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA---TLKGHTKKITSVKFHKDLD--TVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhh---hccCcceEEEEEEeccchh--heeecCCcceEEeecccccc
Confidence 357888888887899999999999999999987666 6899999999999999998 899999999999999 5566
Q ss_pred ceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCC--CCcEEEEEEccCCCeEEEeeecCCCC
Q 001790 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--GHWCTTMLYSADGSRLFSCGTSKDGD 563 (1012)
Q Consensus 486 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~~ 563 (1012)
.......|..+|+.+..++ +|.||++++.||+..+.|++++......... .-.+++.+|+|||..+.++. .|
T Consensus 295 ~~~~~~~h~~~V~~ls~h~--tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt----~d 368 (506)
T KOG0289|consen 295 EPTSSRPHEEPVTGLSLHP--TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGT----PD 368 (506)
T ss_pred Cccccccccccceeeeecc--CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccC----CC
Confidence 6677888999999999988 4579999999999999999998887766553 34789999999999998888 59
Q ss_pred CcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCE
Q 001790 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNL 643 (1012)
Q Consensus 564 ~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~ 643 (1012)
+.|++||+.++..+..|.+|.. +|..++|+.+|-+++++++|+.|++||++..+...++...... .+.++.|.+.|.+
T Consensus 369 ~~vkiwdlks~~~~a~Fpght~-~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SGt~ 446 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPGHTG-PVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSGTY 446 (506)
T ss_pred ceEEEEEcCCccccccCCCCCC-ceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCCCe
Confidence 9999999999999999999887 9999999999999999999999999999999988888876654 7999999999999
Q ss_pred EEEEECCCcEEEEE
Q 001790 644 LAVTTADNGFKILA 657 (1012)
Q Consensus 644 l~~~~~dg~i~iwd 657 (1012)
|+.++.+=.|++++
T Consensus 447 L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 447 LGIAGSDLQVYICK 460 (506)
T ss_pred EEeecceeEEEEEe
Confidence 99997775665554
No 118
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.2e-23 Score=224.34 Aligned_cols=513 Identities=14% Similarity=0.158 Sum_probs=321.8
Q ss_pred EEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCc-eEEEEEcCCCcEEEEe-CCCccee
Q 001790 411 RVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKL-LCVVTCGDDKLIKVWE-LSGRKLF 488 (1012)
Q Consensus 411 ~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~-~~l~s~~~d~~v~vwd-~~~~~~~ 488 (1012)
.-.||+|+++++.+. +..|.||...+|+++. .+.+|..++..+.+.|.... .++++++.||.|++|| ..+..++
T Consensus 21 ~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llk 96 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCT-GNFVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLK 96 (792)
T ss_pred ccccccCCcEEEEee-CCEEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEE
Confidence 357999999998775 4569999999999988 68899999999999987764 4788999999999999 8888888
Q ss_pred eecCCccCEEEEeccc--cCCceEEEEEecCCe------------EEEEEcCCCCcee--eecCCCCcEEEEEEccCCCe
Q 001790 489 NFEGHEAPVYSICPHH--KENIQFIFSTAIDGK------------IKAWLYDTMGSRV--DYDAPGHWCTTMLYSADGSR 552 (1012)
Q Consensus 489 ~~~~h~~~v~~~~~~~--~~~~~~l~s~~~dg~------------i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~ 552 (1012)
++..+-. +..+.+.+ ......+..+..|.. ++-+.+.+..... ....+. .-.++.+++.|.+
T Consensus 97 t~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~-~~~~I~~~~~ge~ 174 (792)
T KOG1963|consen 97 TFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQ-EPKSIVDNNSGEF 174 (792)
T ss_pred EEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhc-CCccEEEcCCceE
Confidence 8764432 32222211 001111112222211 1111111110000 001111 1357788888887
Q ss_pred EEEeeecCCCCCcEEEEeCCCCeee---eeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCC--CeeEEEEecCC
Q 001790 553 LFSCGTSKDGDSFLVEWNESEGTIK---RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN--VNILTSTDAEG 627 (1012)
Q Consensus 553 l~~~~~~~~~~~~i~lwd~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~ 627 (1012)
..... +-.+.+|+..++... +....++...+++.+++|+++++++|..||+|.+|.--. +........+-
T Consensus 175 ~~i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW 249 (792)
T KOG1963|consen 175 KGIVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW 249 (792)
T ss_pred EEEEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEe
Confidence 77765 567888988775411 112223333578999999999999999999999996433 33322233345
Q ss_pred CCCCcceeEeecCCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeeccccccccccCCCCCccccccC
Q 001790 628 GLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSS 707 (1012)
Q Consensus 628 ~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~ 707 (1012)
|...|.+++|+++|.+|.+|+..|.+.+|.+.++.+.+ .+...++|..+.++||+...+....
T Consensus 250 H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf-------LPRLgs~I~~i~vS~ds~~~sl~~~---------- 312 (792)
T KOG1963|consen 250 HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQF-------LPRLGSPILHIVVSPDSDLYSLVLE---------- 312 (792)
T ss_pred cccccceeEEecCCceEeecccceEEEEEeecCCCccc-------ccccCCeeEEEEEcCCCCeEEEEec----------
Confidence 55689999999999999999999999999999885222 1234578999999999887653333
Q ss_pred CCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCC---CCCCCCceEEEEEecCcceEEEeec
Q 001790 708 PVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPE---STDTSSKVVRLLYTNSAVGLLALGS 784 (1012)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~---~~~~~~~i~~l~~s~~g~~l~~~~~ 784 (1012)
|+.|.+-.............+..+. .....+-.+.++++|--+.++-.+.
T Consensus 313 ---------------------------DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~ 365 (792)
T KOG1963|consen 313 ---------------------------DNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGH 365 (792)
T ss_pred ---------------------------CceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCC
Confidence 3333333322211111111111110 0113445677888997777888889
Q ss_pred cCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEEEc---------CCc--
Q 001790 785 NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT---------GGK-- 853 (1012)
Q Consensus 785 dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s---------dg~-- 853 (1012)
.|.|++||+-+..... ...+...+...|.. .+.-.+++++.+.+|.++++.. ||.
T Consensus 366 ~g~vQ~ydl~td~~i~------~~~v~~~n~~~~~~--------n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~ 431 (792)
T KOG1963|consen 366 PGHVQFYDLYTDSTIY------KLQVCDENYSDGDV--------NIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVS 431 (792)
T ss_pred CceEEEEeccccceee------eEEEEeecccCCcc--------eeEEeeeeehhhccceEEEEeeeeehhhhccCceEE
Confidence 9999999986644311 00111111222211 1445678888899999999872 333
Q ss_pred EEEEEcCCC----eEEEEE-cCCCCCeeEEEEecCCCc-EEEEEeCCCeEEEEEccCC----------eEeEEecccCCC
Q 001790 854 ISLFNMMTF----KVMTTF-MSPPPASTFLAFHPQDNN-IIAIGTEDSTIHIYNVRVD----------EVKSKLKGHQKR 917 (1012)
Q Consensus 854 i~lwd~~~~----~~~~~~-~~~~~~i~~l~~sp~d~~-~las~~~dg~v~iwd~~~~----------~~~~~~~~h~~~ 917 (1012)
+++|-.... .+...+ ..|...+...+|.+.... ..++++.||.++||-+.+. .+...-.-|..+
T Consensus 432 LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~ 511 (792)
T KOG1963|consen 432 LKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTP 511 (792)
T ss_pred EEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCc
Confidence 788965433 222222 346666666666542343 8899999999999998432 222221227889
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCccccEEEecCCCCCCCCceEEEEcC---CCCEEEEEeCCeEEEEECCCc
Q 001790 918 ITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNA---DQVRMLVVHETQLAIYDASKM 994 (1012)
Q Consensus 918 V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~---d~~~l~~~~d~~i~vwd~~~~ 994 (1012)
+++++|+.||..|+ ++.|++|.+||..+...+.. ..+....++..+.|.. ....+..+....+.+|++-++
T Consensus 512 i~a~~fs~dGslla-~s~~~~Itiwd~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~ 585 (792)
T KOG1963|consen 512 ITALCFSQDGSLLA-VSFDDTITIWDYDTKNELLC-----TEGSRNWPIAELLFTAQTQNDGALVHATQQRLSVWNLLSM 585 (792)
T ss_pred ccchhhcCCCcEEE-EecCCEEEEecCCChhhhhc-----cccccccchHhHhhhcccccccceeeccCceEehHhhhhh
Confidence 99999999997666 56688999999998422111 1111113444444443 222333446788999999887
Q ss_pred eEEE
Q 001790 995 ERIR 998 (1012)
Q Consensus 995 ~~~~ 998 (1012)
...-
T Consensus 586 ~l~w 589 (792)
T KOG1963|consen 586 SLIW 589 (792)
T ss_pred heec
Confidence 7665
No 119
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=7.2e-24 Score=202.33 Aligned_cols=243 Identities=19% Similarity=0.243 Sum_probs=202.9
Q ss_pred eccCCCcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEE
Q 001790 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1012)
Q Consensus 401 ~~~~h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vw 480 (1012)
.+..|.++|+++|.+ |.++|+|+.|-+|+|||+.....+. .+-.|.+.|+++.|.++-..-.|++|+.||.|.+|
T Consensus 38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhc---ceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 367899999999995 9999999999999999999887666 57789999999999988642258999999999999
Q ss_pred e-CCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeec
Q 001790 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1012)
Q Consensus 481 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 559 (1012)
+ ..-.++.++++|.+.|+.++++|++ ++-++.+.|+.+++||+-.++.-........ .+.+.|+|.|.+++.++
T Consensus 113 ~~~~W~~~~slK~H~~~Vt~lsiHPS~--KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~-at~v~w~~~Gd~F~v~~-- 187 (362)
T KOG0294|consen 113 RVGSWELLKSLKAHKGQVTDLSIHPSG--KLALSVGGDQVLRTWNLVRGRVAFVLNLKNK-ATLVSWSPQGDHFVVSG-- 187 (362)
T ss_pred EcCCeEEeeeecccccccceeEecCCC--ceEEEEcCCceeeeehhhcCccceeeccCCc-ceeeEEcCCCCEEEEEe--
Confidence 9 7788899999999999999999954 7899999999999999988777665554433 34499999999888886
Q ss_pred CCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEe--
Q 001790 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF-- 637 (1012)
Q Consensus 560 ~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~-- 637 (1012)
...|-+|.+.+........... .+.++.|. ++..+++|++|+.|.+||..+..+...+..|. .+|.++.+
T Consensus 188 ---~~~i~i~q~d~A~v~~~i~~~~--r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~--~RVK~i~~~~ 259 (362)
T KOG0294|consen 188 ---RNKIDIYQLDNASVFREIENPK--RILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHE--NRVKDIASYT 259 (362)
T ss_pred ---ccEEEEEecccHhHhhhhhccc--cceeeeec-CCceEEEecCCceEEEeccCCCccceeeecch--hheeeeEEEe
Confidence 5678999988877766655431 34545543 56899999999999999999988888877554 48888874
Q ss_pred ecCCCEEEEEECCCcEEEEEccCC
Q 001790 638 SKEGNLLAVTTADNGFKILANAIG 661 (1012)
Q Consensus 638 s~~g~~l~~~~~dg~i~iwd~~~~ 661 (1012)
.|++.+|++++.||.|++||+...
T Consensus 260 ~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 260 NPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred cCCceEEEEeccCceEEEEEcccc
Confidence 467899999999999999998765
No 120
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1e-23 Score=200.83 Aligned_cols=295 Identities=14% Similarity=0.181 Sum_probs=224.7
Q ss_pred CCCccceEeecCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEE
Q 001790 332 DLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (1012)
Q Consensus 332 ~~~~~~~~~~~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 411 (1012)
..|.....++.|.. -.|+.||+.|. +||+|..||.|.|||+.+-.. .+++.+|..+|.+
T Consensus 12 ~~PEel~~tld~~~-a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~i-------------------ar~lsaH~~pi~s 70 (405)
T KOG1273|consen 12 EYPEELTHTLDNPL-AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRI-------------------ARMLSAHVRPITS 70 (405)
T ss_pred cChHhhceeccCCc-cceEEeccCcc-eeeeeccCCcEEEEEccccch-------------------hhhhhccccceeE
Confidence 45677777888776 89999999999 799999999999999987542 2458899999999
Q ss_pred EEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEeCCCcceeeec
Q 001790 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE 491 (1012)
Q Consensus 412 v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~ 491 (1012)
++||+||+.|+|++.|..|.+||+..|.+++.+ ....+|+.+.|+|...+..+++- .+..-.+-+.+......+.
T Consensus 71 l~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va~~-~~~sp~vi~~s~~~h~~Lp 145 (405)
T KOG1273|consen 71 LCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVATI-MEESPVVIDFSDPKHSVLP 145 (405)
T ss_pred EEecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEEEE-ecCCcEEEEecCCceeecc
Confidence 999999999999999999999999999877643 26789999999998877444443 3444455552221111221
Q ss_pred CCc-cC--E--EEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCC-CcEEEEEEccCCCeEEEeeecCCCCCc
Q 001790 492 GHE-AP--V--YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1012)
Q Consensus 492 ~h~-~~--v--~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~ 565 (1012)
... +. + .+..| +..|+++++|...|.+.++|..+.+++..+.... ..|..+.++..|++++..+ .|..
T Consensus 146 ~d~d~dln~sas~~~f--dr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNt----sDRv 219 (405)
T KOG1273|consen 146 KDDDGDLNSSASHGVF--DRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINT----SDRV 219 (405)
T ss_pred CCCccccccccccccc--cCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEec----CCce
Confidence 111 11 1 11123 4567899999999999999999998888777666 6899999999999999988 4999
Q ss_pred EEEEeCCCC-------eee--eeecC-CCCCcceEEEEecCCCEEEEEe-CCCcEEEEeCCCCeeEEEEecCCCCCCcce
Q 001790 566 LVEWNESEG-------TIK--RTYAG-FRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1012)
Q Consensus 566 i~lwd~~~~-------~~~--~~~~~-~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1012)
|+.|+++.- ++. +.+.. -....-.+++|+.+|.++++++ ....++||....|.+++.+....+. ....
T Consensus 220 IR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE-~l~D 298 (405)
T KOG1273|consen 220 IRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGE-ELLD 298 (405)
T ss_pred EEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchh-heee
Confidence 999997631 111 22211 0112356799999999998887 4678999999999999999765532 5678
Q ss_pred eEeecCCCEEEEEECCCcEEEEEccC
Q 001790 635 LRFSKEGNLLAVTTADNGFKILANAI 660 (1012)
Q Consensus 635 v~~s~~g~~l~~~~~dg~i~iwd~~~ 660 (1012)
+.|+|-...+++- ..|.+++|....
T Consensus 299 V~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 299 VNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred cccccceeeeeec-cCCceEEEEeec
Confidence 9999988888877 778999998654
No 121
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=7.3e-24 Score=201.50 Aligned_cols=323 Identities=16% Similarity=0.260 Sum_probs=234.7
Q ss_pred eeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEE
Q 001790 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524 (1012)
Q Consensus 446 ~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd 524 (1012)
.+.||...|+.++...... .+.+++.|.+.+||. .+|.++.++.||.+.|+++.|+++ +.++++++.|++.+||.
T Consensus 143 e~~GHkDGiW~Vaa~~tqp--i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s--~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQP--ICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNS--GLLLLTASGDETAHIWK 218 (481)
T ss_pred hhcccccceeeehhhcCCc--ceeecccccceeEEeeccccceeeecccccceeeEEeccc--cceEEEccCCcchHHHH
Confidence 5789999999999876655 899999999999999 999999999999999999999885 47999999999999996
Q ss_pred cCCCCceeee---cCCCCcEEEEEEc-cCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEE
Q 001790 525 YDTMGSRVDY---DAPGHWCTTMLYS-ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHF 600 (1012)
Q Consensus 525 ~~~~~~~~~~---~~~~~~v~~~~~s-~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 600 (1012)
..-.-....- ..|.+. ....-+ .+... .++..+.=...-..++..+.+|.. .|.+..|-..|+.+
T Consensus 219 ~av~~~vP~~~a~~~hSsE-eE~e~sDe~~~d---------~d~~~~sD~~tiRvPl~~ltgH~~-vV~a~dWL~gg~Q~ 287 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSE-EEEEHSDEHNRD---------TDSSEKSDGHTIRVPLMRLTGHRA-VVSACDWLAGGQQM 287 (481)
T ss_pred HhhcCcCCCCCCCCCCCch-hhhhcccccccc---------cccccccCCceeeeeeeeeecccc-ceEehhhhcCccee
Confidence 3211000000 000000 000000 00000 011111000011235667888876 78888899999999
Q ss_pred EEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCcc
Q 001790 601 LAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPI 680 (1012)
Q Consensus 601 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 680 (1012)
++++.|.+..+||+++++++..+..+.+ ..+.++-+|..+++++.+.|.+.++||+....
T Consensus 288 vTaSWDRTAnlwDVEtge~v~~LtGHd~--ELtHcstHptQrLVvTsSrDtTFRLWDFReaI------------------ 347 (481)
T KOG0300|consen 288 VTASWDRTANLWDVETGEVVNILTGHDS--ELTHCSTHPTQRLVVTSSRDTTFRLWDFREAI------------------ 347 (481)
T ss_pred eeeeccccceeeeeccCceeccccCcch--hccccccCCcceEEEEeccCceeEeccchhhc------------------
Confidence 9999999999999999999999986655 78889999999999999999999999975321
Q ss_pred ceeeeccccccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCC
Q 001790 681 ESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPES 760 (1012)
Q Consensus 681 ~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 760 (1012)
.+++
T Consensus 348 ~sV~---------------------------------------------------------------------------- 351 (481)
T KOG0300|consen 348 QSVA---------------------------------------------------------------------------- 351 (481)
T ss_pred ceee----------------------------------------------------------------------------
Confidence 0000
Q ss_pred CCCCCceEEEEEecCcceEEEeeccCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEe
Q 001790 761 TDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS 840 (1012)
Q Consensus 761 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 840 (1012)
+ +.| |...|+++.|.
T Consensus 352 -----------------------------V----------------------------------FQG--HtdtVTS~vF~ 366 (481)
T KOG0300|consen 352 -----------------------------V----------------------------------FQG--HTDTVTSVVFN 366 (481)
T ss_pred -----------------------------e----------------------------------ecc--cccceeEEEEe
Confidence 0 112 66667777776
Q ss_pred eCCCEEEEEc-CCcEEEEEcCCCe-EEEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeE----Eeccc
Q 001790 841 KNDSYVMSAT-GGKISLFNMMTFK-VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS----KLKGH 914 (1012)
Q Consensus 841 ~dg~~la~~s-dg~i~lwd~~~~~-~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~----~~~~h 914 (1012)
.|.+ +++|+ |.+|++||+.+.+ .+.++. -..+++.++++. ++.++|.--+++.|++||+...++.. .-++|
T Consensus 367 ~dd~-vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~-g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgH 443 (481)
T KOG0300|consen 367 TDDR-VVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSK-GHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGH 443 (481)
T ss_pred cCCc-eeecCCCceEEEeeeccccCcceeee-cCCccceeEeec-CCceEEeccCCceEEEEecCCCccccCCccccccc
Confidence 6654 44555 6778888887654 334443 456789999998 88899999999999999997664322 34689
Q ss_pred CCCeEEEEEcCCC--CEEEEEeCCCcEEEEeCCCC
Q 001790 915 QKRITGLAFSTSL--NILVSSGADAQLCVWSIDTW 947 (1012)
Q Consensus 915 ~~~V~~l~~spdg--~~l~s~s~Dg~i~vwd~~~~ 947 (1012)
...|+|++|..+- .-|+++|-|..+.=|++...
T Consensus 444 rRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 444 RRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 9999999998553 45889999999999998763
No 122
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.92 E-value=3.5e-23 Score=215.51 Aligned_cols=273 Identities=12% Similarity=0.156 Sum_probs=203.6
Q ss_pred ceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEE
Q 001790 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1012)
Q Consensus 346 ~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~ 425 (1012)
.|..++|-|||..+++.+ +..+.|||...|..+.+ +++|.+.|.|++||.||+.+|+|+
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llqt-------------------LKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQP-------------------LKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCcccccc-------------------cccccceEEEEEEccCCceeccCC
Confidence 899999999999765544 56899999999988754 899999999999999999999999
Q ss_pred CCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEeCCCcceeeecCCccCEEEEecccc
Q 001790 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHK 505 (1012)
Q Consensus 426 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~h~~~v~~~~~~~~ 505 (1012)
.|..|.+|+-+-...++ ..|...|.|+.|+|-.+ .++||+- ...-+|....+.+...+ ....+.+++| +
T Consensus 73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsL-sdFglWS~~qK~V~K~k-ss~R~~~CsW--t 141 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSL-SDFGLWSPEQKSVSKHK-SSSRIICCSW--T 141 (1081)
T ss_pred CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcch-hhccccChhhhhHHhhh-hheeEEEeee--c
Confidence 99999999876433222 26999999999999998 7888874 35668984444333222 2345666666 6
Q ss_pred CCceEEEEEecCCeEEEEEcCCCCceeeec---CCCCcEEEEEEccCCC-----eEEEeeecCCCCCcEEEEeCCCCeee
Q 001790 506 ENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---APGHWCTTMLYSADGS-----RLFSCGTSKDGDSFLVEWNESEGTIK 577 (1012)
Q Consensus 506 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~---~~~~~v~~~~~s~~~~-----~l~~~~~~~~~~~~i~lwd~~~~~~~ 577 (1012)
.||++++.|-.+|+|.+-+-. ++....+. +.+.+|.+++|+|... .+++.-. ..++.++.+. |+.+
T Consensus 142 nDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW----~qTLSFy~Ls-G~~I 215 (1081)
T KOG1538|consen 142 NDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW----GQTLSFYQLS-GKQI 215 (1081)
T ss_pred CCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec----cceeEEEEec-ceee
Confidence 688999999999999987543 33333333 3566999999999643 3444332 4455555543 4443
Q ss_pred eeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEE
Q 001790 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1012)
Q Consensus 578 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd 657 (1012)
..-....- ...++.+.++|.+++.||.|+.+.+|.. .|-.+.+.....+ .|+.++..|+++.++.|..||+|-.|+
T Consensus 216 gk~r~L~F-dP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D~--WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 216 GKDRALNF-DPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQDS--WIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred cccccCCC-CchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccce--eEEEEEEccCCceEEEEEccCeeehhh
Confidence 32222222 4567899999999999999999999975 4555555544333 799999999999999999999999998
Q ss_pred ccC
Q 001790 658 NAI 660 (1012)
Q Consensus 658 ~~~ 660 (1012)
+..
T Consensus 292 l~f 294 (1081)
T KOG1538|consen 292 LIF 294 (1081)
T ss_pred hHH
Confidence 754
No 123
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=7.8e-24 Score=212.96 Aligned_cols=266 Identities=12% Similarity=0.228 Sum_probs=212.9
Q ss_pred cceEeecCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEc
Q 001790 336 TVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1012)
Q Consensus 336 ~~~~~~~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 415 (1012)
.....+.|.++|+.+..-|....++|+++..+.|.|||...-...... .+...+.-.+.||...=+.++|+
T Consensus 116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~---------~~~~~Pdl~L~gH~~eg~glsWn 186 (422)
T KOG0264|consen 116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA---------SGECRPDLRLKGHEKEGYGLSWN 186 (422)
T ss_pred EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc---------cccCCCceEEEeecccccccccc
Confidence 344556799999999999999999999999999999998654332110 00111233588999988899999
Q ss_pred c-CCCEEEEEECCCeEEEEeecCCCc----ceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-C--CCcce
Q 001790 416 P-DGNYVGVAFTKHLIQLYSYAGSND----LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L--SGRKL 487 (1012)
Q Consensus 416 p-dg~~las~~~d~~v~vwd~~~~~~----~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~--~~~~~ 487 (1012)
+ ..-.|++|+.|++|++||+..... +.....+.+|...|..++|++-... +|++++.|+.+.||| . +.++.
T Consensus 187 ~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~ 265 (422)
T KOG0264|consen 187 RQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPS 265 (422)
T ss_pred cccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCc
Confidence 9 455888999999999999985433 4455568899999999999998776 799999999999999 6 55666
Q ss_pred eeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCc-eeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcE
Q 001790 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFL 566 (1012)
Q Consensus 488 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 566 (1012)
....+|++.|+|++|+|.. +.+||+|+.|++|.+||++.... ...+..|...|..+.|+|....+++.+. .|+.+
T Consensus 266 ~~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg---~D~rl 341 (422)
T KOG0264|consen 266 HSVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG---TDRRL 341 (422)
T ss_pred ccccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc---cCCcE
Confidence 7788999999999999875 57999999999999999998655 4578899999999999998776555443 59999
Q ss_pred EEEeCCCCe--------------eeeeecCCCCCcceEEEEecCCCEEE-EEeCCCcEEEEeCCC
Q 001790 567 VEWNESEGT--------------IKRTYAGFRKKSNGVVQFDTTQNHFL-AVGEDSQIKFWDMDN 616 (1012)
Q Consensus 567 ~lwd~~~~~--------------~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iwd~~~ 616 (1012)
.+||+..-. ++..-.||.. .|..+.|+|+..+++ +.++|+.+.||.+..
T Consensus 342 ~vWDls~ig~eq~~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 342 NVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred EEEeccccccccChhhhccCCcceeEEecCccc-ccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 999986422 2344456666 788899999987755 467999999999853
No 124
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=6.2e-22 Score=179.38 Aligned_cols=248 Identities=16% Similarity=0.168 Sum_probs=199.2
Q ss_pred CCcceEEEEEccCCCEEEEEECCCeEEEEeecC------CCc------ceeeeeeeccccCeEEEEEeCCCCceEEEEEc
Q 001790 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG------SND------LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG 472 (1012)
Q Consensus 405 h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~------~~~------~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~ 472 (1012)
....|.+++|.|.|.+.|+|+...+.+|-.... +.. ......-+.|.+.|+|.+|+|+|+ ++++|+
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge--liatgs 108 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE--LIATGS 108 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC--eEEecC
Confidence 467899999999999999999999988864421 110 111223457899999999999999 999999
Q ss_pred CCCcEEEEe-CCC--c---ceeeecCCccCEEEEeccccC--CceEEEEEe-cCCeEEEEEcCCCCceeeecCCCCcEEE
Q 001790 473 DDKLIKVWE-LSG--R---KLFNFEGHEAPVYSICPHHKE--NIQFIFSTA-IDGKIKAWLYDTMGSRVDYDAPGHWCTT 543 (1012)
Q Consensus 473 ~d~~v~vwd-~~~--~---~~~~~~~h~~~v~~~~~~~~~--~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~~v~~ 543 (1012)
.|++|++.. ... + .-..|.-|.+.|..++|...+ .+.+|++++ .|-.|.+-|...++....+.+|.+.|.+
T Consensus 109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghila 188 (350)
T KOG0641|consen 109 NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILA 188 (350)
T ss_pred CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEE
Confidence 999999976 221 1 124667799999999986433 456777765 3567777788888888889999988877
Q ss_pred EEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCC------CCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 001790 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF------RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (1012)
Q Consensus 544 ~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 617 (1012)
+ ++-+|-++++++ +|.+|++||++-..++.++... ....|..++..|.|+.|++|-.|....+||++.+
T Consensus 189 l-yswn~~m~~sgs----qdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~ 263 (350)
T KOG0641|consen 189 L-YSWNGAMFASGS----QDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG 263 (350)
T ss_pred E-EEecCcEEEccC----CCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC
Confidence 6 455777888887 6999999999988888776532 2346888999999999999999999999999999
Q ss_pred eeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCC
Q 001790 618 NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1012)
Q Consensus 618 ~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~ 661 (1012)
+.++.+..+ ...|.++.|+|...++.+++.|..|++-|+...
T Consensus 264 r~iq~f~ph--sadir~vrfsp~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 264 RMIQRFHPH--SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred ceeeeeCCC--ccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence 999998755 448999999999999999999999999888653
No 125
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=4.3e-23 Score=217.18 Aligned_cols=281 Identities=16% Similarity=0.252 Sum_probs=223.9
Q ss_pred eeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcce-eEeec-CCCEEEEEECCCc
Q 001790 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR-LRFSK-EGNLLAVTTADNG 652 (1012)
Q Consensus 575 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~-v~~s~-~g~~l~~~~~dg~ 652 (1012)
+..+.+.+|.. .+..+++.+ +..+++++.||++++|+-..++.+......++.+-|.. +++-+ ++..+++|+.|++
T Consensus 5 ~ls~~l~gH~~-DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 5 KLSHELEGHKS-DVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred eeEEEeccCcc-chheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 34567778876 677777654 45789999999999999887777665555454445554 67765 5567999999999
Q ss_pred EEEEEccCCceeeecccCCccccccCccceeeeccccccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccc
Q 001790 653 FKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVD 732 (1012)
Q Consensus 653 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 732 (1012)
+.+|...+.. ....+
T Consensus 83 i~v~~~~~~~-P~~~L---------------------------------------------------------------- 97 (745)
T KOG0301|consen 83 IIVFKLSQAE-PLYTL---------------------------------------------------------------- 97 (745)
T ss_pred EEEEecCCCC-chhhh----------------------------------------------------------------
Confidence 9999876541 11111
Q ss_pred cccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeeccCeeEeeeccccccCCCCCcccccccee
Q 001790 733 DVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQH 812 (1012)
Q Consensus 733 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~ 812 (1012)
.+|.+.|.++....++. +++++.|.++++|.......
T Consensus 98 ----------------------------kgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~-------------- 134 (745)
T KOG0301|consen 98 ----------------------------KGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVY-------------- 134 (745)
T ss_pred ----------------------------hccccceeeeecCCcCc-eEecccccceEEecchhhhc--------------
Confidence 22888999999888888 99999999999996532111
Q ss_pred eccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEEEc-CCcEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEE
Q 001790 813 WLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG 891 (1012)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~ 891 (1012)
.+.+ |...|+++++-|++ .+++|+ |.+|++|.- ++.+++|.+|.+.|..+++-+ ++ .++++
T Consensus 135 -----------~l~g--H~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~-~~-~flSc 196 (745)
T KOG0301|consen 135 -----------SLQG--HTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLD-DS-HFLSC 196 (745)
T ss_pred -----------ccCC--cchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEec-CC-CeEee
Confidence 1344 99999999999998 556666 999999985 788999999999999999997 54 57789
Q ss_pred eCCCeEEEEEccCCeEeEEecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCccccEEEecCCCCCCCCceEEEE
Q 001790 892 TEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQF 971 (1012)
Q Consensus 892 ~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~f 971 (1012)
+.||.|++|++ +|+++.++.||++-|.+++..+++..++|+++|++++||+.. ++.+.+ ..|. ..|+++.+
T Consensus 197 sNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I--~lPt----tsiWsa~~ 267 (745)
T KOG0301|consen 197 SNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVI--TLPT----TSIWSAKV 267 (745)
T ss_pred cCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEE--ecCc----cceEEEEE
Confidence 99999999998 888999999999999999988888999999999999999988 443333 3222 57899999
Q ss_pred cCCCCEEEEEeCCeEEEEECC
Q 001790 972 NADQVRMLVVHETQLAIYDAS 992 (1012)
Q Consensus 972 s~d~~~l~~~~d~~i~vwd~~ 992 (1012)
-++|..++.++||.|+||..+
T Consensus 268 L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 268 LLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred eeCCCEEEeccCceEEEEEec
Confidence 999998888899999999876
No 126
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=3.4e-22 Score=190.97 Aligned_cols=181 Identities=13% Similarity=0.204 Sum_probs=151.2
Q ss_pred EEEEEcCCCcEEEEeC--CC-----------cceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceee
Q 001790 467 CVVTCGDDKLIKVWEL--SG-----------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD 533 (1012)
Q Consensus 467 ~l~s~~~d~~v~vwd~--~~-----------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~ 533 (1012)
.|+.|+....|.-++. .. .++..+..|.++|+++++ ++.++++|+.|-+|++||+........
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV----s~~~~aSGssDetI~IYDm~k~~qlg~ 78 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV----SGPYVASGSSDETIHIYDMRKRKQLGI 78 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe----cceeEeccCCCCcEEEEeccchhhhcc
Confidence 3566666665555541 11 235667889999999998 457999999999999999999888888
Q ss_pred ecCCCCcEEEEEEccCCC--eEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEE
Q 001790 534 YDAPGHWCTTMLYSADGS--RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF 611 (1012)
Q Consensus 534 ~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 611 (1012)
+..|.+.|+++.|.++-. .|++|+ .||.|.+|+.....++..+.+|.. .|+.++++|.++.-++.+.|+.++.
T Consensus 79 ll~HagsitaL~F~~~~S~shLlS~s----dDG~i~iw~~~~W~~~~slK~H~~-~Vt~lsiHPS~KLALsVg~D~~lr~ 153 (362)
T KOG0294|consen 79 LLSHAGSITALKFYPPLSKSHLLSGS----DDGHIIIWRVGSWELLKSLKAHKG-QVTDLSIHPSGKLALSVGGDQVLRT 153 (362)
T ss_pred eeccccceEEEEecCCcchhheeeec----CCCcEEEEEcCCeEEeeeeccccc-ccceeEecCCCceEEEEcCCceeee
Confidence 889999999999999875 888888 599999999999999999999988 5999999999999999999999999
Q ss_pred EeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccC
Q 001790 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1012)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~ 660 (1012)
||+-.|+.-........ .+.+.|+|.|.+++++..+ .|-+|.+.+
T Consensus 154 WNLV~Gr~a~v~~L~~~---at~v~w~~~Gd~F~v~~~~-~i~i~q~d~ 198 (362)
T KOG0294|consen 154 WNLVRGRVAFVLNLKNK---ATLVSWSPQGDHFVVSGRN-KIDIYQLDN 198 (362)
T ss_pred ehhhcCccceeeccCCc---ceeeEEcCCCCEEEEEecc-EEEEEeccc
Confidence 99999988777766442 3569999999999888765 677776644
No 127
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.4e-23 Score=193.01 Aligned_cols=252 Identities=18% Similarity=0.253 Sum_probs=201.9
Q ss_pred ecCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc--CC
Q 001790 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DG 418 (1012)
Q Consensus 341 ~~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg 418 (1012)
..|.+.|-.+...--|+ .|||++.|++|+|+.++.+.... ....|.||.++|..++|.. -|
T Consensus 8 t~H~D~IHda~lDyygk-rlATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~G 70 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGK-RLATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKFG 70 (299)
T ss_pred hhhhhhhhHhhhhhhcc-eeeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccccC
Confidence 35888999999988999 49999999999999998765311 1134899999999999976 89
Q ss_pred CEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe--CCCcc--eeeecCCc
Q 001790 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRK--LFNFEGHE 494 (1012)
Q Consensus 419 ~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd--~~~~~--~~~~~~h~ 494 (1012)
.+||+|+.||.|.||.-++| ...+......|...|++++|.|.+-.+.|++++.||.|.|.+ .+|.- ......|.
T Consensus 71 ~iLAScsYDgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~ 149 (299)
T KOG1332|consen 71 TILASCSYDGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHE 149 (299)
T ss_pred cEeeEeecCceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccc
Confidence 99999999999999999988 444445677899999999999998888999999999999998 33222 24456799
Q ss_pred cCEEEEeccccCC-c-----------eEEEEEecCCeEEEEEcCCCCce--eeecCCCCcEEEEEEccCC----CeEEEe
Q 001790 495 APVYSICPHHKEN-I-----------QFIFSTAIDGKIKAWLYDTMGSR--VDYDAPGHWCTTMLYSADG----SRLFSC 556 (1012)
Q Consensus 495 ~~v~~~~~~~~~~-~-----------~~l~s~~~dg~i~~wd~~~~~~~--~~~~~~~~~v~~~~~s~~~----~~l~~~ 556 (1012)
-.|++++|.|..- | ..|++|+.|+.|++|+.+...-. ..+..|.+.|..++|.|.- .+|+++
T Consensus 150 ~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~ 229 (299)
T KOG1332|consen 150 IGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASC 229 (299)
T ss_pred cccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEe
Confidence 9999999987521 2 56999999999999999876332 3478899999999999964 468888
Q ss_pred eecCCCCCcEEEEeCCCC--eeeee-ecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCC
Q 001790 557 GTSKDGDSFLVEWNESEG--TIKRT-YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1012)
Q Consensus 557 ~~~~~~~~~i~lwd~~~~--~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 615 (1012)
+ +|+.+.||..... .-..+ +.... ..+..+.|+..|+.|++++.|+.|.+|.-.
T Consensus 230 S----qDg~viIwt~~~e~e~wk~tll~~f~-~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 230 S----QDGTVIIWTKDEEYEPWKKTLLEEFP-DVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred c----CCCcEEEEEecCccCcccccccccCC-cceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 7 6999999976521 11122 22222 278899999999999999999999999754
No 128
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=5.9e-23 Score=205.95 Aligned_cols=287 Identities=11% Similarity=0.216 Sum_probs=231.3
Q ss_pred CCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCC-EEE
Q 001790 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN-YVG 422 (1012)
Q Consensus 344 ~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~la 422 (1012)
.+.|++|.|+|..+ +|.+++.||+++||.+.......-.. +.--..+|.+.+|.|+|. .++
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS-----------------~~l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQS-----------------IHLEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhhee-----------------eeeccCccceeeecCCCceEEE
Confidence 46899999999999 78899999999999987443321111 222357999999999999 899
Q ss_pred EEECCCeEEEEeecCCCcceeeeeeeccc-cCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCCccCEEEE
Q 001790 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1012)
Q Consensus 423 s~~~d~~v~vwd~~~~~~~~~~~~l~~h~-~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~v~~~ 500 (1012)
+++.....+.||+.+.+..+.. .+.++. ..+.....+++++ +|+..|..|.|.+.. .+++.+.+++ -.+.|..+
T Consensus 275 ~s~rrky~ysyDle~ak~~k~~-~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~ 350 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKVTKLK-PPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF 350 (514)
T ss_pred ecccceEEEEeecccccccccc-CCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence 9999999999999998754422 344444 4577788999999 899999999999999 8888888876 56779999
Q ss_pred eccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCC-cEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCC------
Q 001790 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH-WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE------ 573 (1012)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~------ 573 (1012)
+|+ .+++.|++++.+|.|.+||++...+...+...++ .-++++.+++|.++++|+ ..|.|.|||..+
T Consensus 351 ~fs--Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS----~~GiVNIYd~~s~~~s~~ 424 (514)
T KOG2055|consen 351 TFS--SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGS----DSGIVNIYDGNSCFASTN 424 (514)
T ss_pred EEe--cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEecc----CcceEEEeccchhhccCC
Confidence 986 4678999999999999999999877777665544 567888999999999998 589999999653
Q ss_pred CeeeeeecCCCCCcceEEEEecCCCEEEEEe--CCCcEEEEeCCCCeeEEEEecCC-CCCCcceeEeecCCCEEEEEECC
Q 001790 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEG-GLPNLPRLRFSKEGNLLAVTTAD 650 (1012)
Q Consensus 574 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~~g~~l~~~~~d 650 (1012)
.+++..+..... .|+.+.|+++.+.|+.++ .+..+++-.+.+......++... ..+.|+|++|||.|.++|+|..+
T Consensus 425 PkPik~~dNLtt-~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~ 503 (514)
T KOG2055|consen 425 PKPIKTVDNLTT-AITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEA 503 (514)
T ss_pred CCchhhhhhhhe-eeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCC
Confidence 455666665554 789999999999998887 57789999988877666554332 23468999999999999999999
Q ss_pred CcEEEEEcc
Q 001790 651 NGFKILANA 659 (1012)
Q Consensus 651 g~i~iwd~~ 659 (1012)
|.+.+|.+.
T Consensus 504 grv~l~kL~ 512 (514)
T KOG2055|consen 504 GRVHLFKLH 512 (514)
T ss_pred CceeeEeec
Confidence 999999863
No 129
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=8.9e-23 Score=205.45 Aligned_cols=296 Identities=16% Similarity=0.221 Sum_probs=222.6
Q ss_pred CCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEe-CCCcEEEEeCCCCeeEE-EEecCCCCCCcceeEeec
Q 001790 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILT-STDAEGGLPNLPRLRFSK 639 (1012)
Q Consensus 562 ~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~v~~s~ 639 (1012)
....+.+||+++|.....+.+.....-..+..- .+.+++++. ....|.+|.+....... .+-. .++|.+++-+|
T Consensus 16 d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~---Pg~v~al~s~n 91 (476)
T KOG0646|consen 16 DPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVL---PGPVHALASSN 91 (476)
T ss_pred CCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhccc---ccceeeeecCC
Confidence 456699999999999998887622122222211 235666665 56689999987665544 2222 23789999999
Q ss_pred CCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeeccccccccccCCCCCccccccCCCCCCccccCCC
Q 001790 640 EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVD 719 (1012)
Q Consensus 640 ~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1012)
+|.+|+.|+..|.+++|.+.+| .++.
T Consensus 92 ~G~~l~ag~i~g~lYlWelssG-~LL~----------------------------------------------------- 117 (476)
T KOG0646|consen 92 LGYFLLAGTISGNLYLWELSSG-ILLN----------------------------------------------------- 117 (476)
T ss_pred CceEEEeecccCcEEEEEeccc-cHHH-----------------------------------------------------
Confidence 9999999999999999999887 2221
Q ss_pred CCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeeccCeeEeeeccccccC
Q 001790 720 PTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQN 799 (1012)
Q Consensus 720 ~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~ 799 (1012)
+|+ .|-..|+++.|+.||..+++++.||.|.+|.+...-
T Consensus 118 --------------------v~~-------------------aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv-- 156 (476)
T KOG0646|consen 118 --------------------VLS-------------------AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLV-- 156 (476)
T ss_pred --------------------HHH-------------------hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeec--
Confidence 121 177889999999999999999999999999875421
Q ss_pred CCCCccccccceeeccCCCc--eeeecccCCCCCCCEeEEEEeeCC--CEEEEEc-CCcEEEEEcCCCeEEEEEcCCCCC
Q 001790 800 PSGKATASAVPQHWLPSSGL--LMANDVAGVNLEEAVPCIALSKND--SYVMSAT-GGKISLFNMMTFKVMTTFMSPPPA 874 (1012)
Q Consensus 800 ~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~dg--~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~ 874 (1012)
+..... .....+.. |.-+|+.+.+.+.| .+|++++ |.++++||+..+.++.++.. ...
T Consensus 157 --------------~a~~~~~~~p~~~f~~--HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~s 219 (476)
T KOG0646|consen 157 --------------SADNDHSVKPLHIFSD--HTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF-PSS 219 (476)
T ss_pred --------------ccccCCCccceeeecc--CcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec-CCc
Confidence 111110 01112333 88999999887753 5788888 99999999999999888764 457
Q ss_pred eeEEEEecCCCcEEEEEeCCCeEEEEEccCC----------------eEeEEecccCC--CeEEEEEcCCCCEEEEEeCC
Q 001790 875 STFLAFHPQDNNIIAIGTEDSTIHIYNVRVD----------------EVKSKLKGHQK--RITGLAFSTSLNILVSSGAD 936 (1012)
Q Consensus 875 i~~l~~sp~d~~~las~~~dg~v~iwd~~~~----------------~~~~~~~~h~~--~V~~l~~spdg~~l~s~s~D 936 (1012)
+.+++.+| .++.+.+|+.+|.|.+.++... ..+..+.||.+ +|+|++.+-||.+|++|+.|
T Consensus 220 i~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~d 298 (476)
T KOG0646|consen 220 IKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDED 298 (476)
T ss_pred ceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCC
Confidence 99999999 8999999999999999887532 34566789998 99999999999999999999
Q ss_pred CcEEEEeCCCCCccccEEEecCCCCCCCCceEEEEcCCCCEEEE
Q 001790 937 AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV 980 (1012)
Q Consensus 937 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~ 980 (1012)
|.|+|||+.+.+++++..- ..++|+.+.+.|=.+-.+.
T Consensus 299 g~VcvWdi~S~Q~iRtl~~------~kgpVtnL~i~~~~~~~~l 336 (476)
T KOG0646|consen 299 GKVCVWDIYSKQCIRTLQT------SKGPVTNLQINPLERGIIL 336 (476)
T ss_pred CCEEEEecchHHHHHHHhh------hccccceeEeeccccceec
Confidence 9999999999887766531 1178888888665443333
No 130
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=5.2e-23 Score=207.09 Aligned_cols=223 Identities=14% Similarity=0.164 Sum_probs=191.5
Q ss_pred CcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-C--
Q 001790 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-- 482 (1012)
Q Consensus 406 ~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~-- 482 (1012)
.++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+. .+.+|-..|+++.|+.||. +|+|||.||.|.+|. .
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEee
Confidence 4689999999999999999999999999999999887 5789999999999999999 899999999999997 2
Q ss_pred -------CCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEE
Q 001790 483 -------SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1012)
Q Consensus 483 -------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 555 (1012)
+-++++.|..|.-+|+.+...+.+....+++++.|.++++||+..+.....+.. ...+.+++.+|-++.+++
T Consensus 156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~yi 234 (476)
T KOG0646|consen 156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVYI 234 (476)
T ss_pred cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec-CCcceeEEEcccccEEEe
Confidence 235678899999999999987765667999999999999999998876666553 446899999999999999
Q ss_pred eeecCCCCCcEEEEeCCC----------------CeeeeeecCCCC-CcceEEEEecCCCEEEEEeCCCcEEEEeCCCCe
Q 001790 556 CGTSKDGDSFLVEWNESE----------------GTIKRTYAGFRK-KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1012)
Q Consensus 556 ~~~~~~~~~~i~lwd~~~----------------~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1012)
|+ .+|.|.+.++.. +..+..+.+|.+ ..|+|++++-||..|++|+.||.++|||..+.+
T Consensus 235 Gt----~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 235 GT----EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred cC----CcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 98 588888876542 234456677766 579999999999999999999999999999999
Q ss_pred eEEEEecCCCCCCcceeEeecC
Q 001790 619 ILTSTDAEGGLPNLPRLRFSKE 640 (1012)
Q Consensus 619 ~~~~~~~~~~~~~v~~v~~s~~ 640 (1012)
+++++... .++|+.+.+.|-
T Consensus 311 ~iRtl~~~--kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 311 CIRTLQTS--KGPVTNLQINPL 330 (476)
T ss_pred HHHHHhhh--ccccceeEeecc
Confidence 99888732 337899998774
No 131
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=1.5e-21 Score=210.78 Aligned_cols=283 Identities=12% Similarity=0.210 Sum_probs=206.1
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEE-EEEECCCcEEEEEccCCceeeecccCCccccc
Q 001790 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL-AVTTADNGFKILANAIGLRSLRAVENPPFEAL 676 (1012)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 676 (1012)
..+++++.|+.|++||+.+++.+..+.... .+.+++|+|+|+.+ ++++.++.|++||..++.. ...+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~---~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~------- 70 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ---RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV-IGTLP------- 70 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC---CCCceEECCCCCEEEEEECCCCeEEEEECCCCcE-EEecc-------
Confidence 567888999999999999998888876533 46789999999876 5667789999999876521 11000
Q ss_pred cCccceeeeccccccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEe
Q 001790 677 RTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVT 756 (1012)
Q Consensus 677 ~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~ 756 (1012)
T Consensus 71 -------------------------------------------------------------------------------- 70 (300)
T TIGR03866 71 -------------------------------------------------------------------------------- 70 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCceEEEEEecCcceEEEee-ccCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEe
Q 001790 757 MPESTDTSSKVVRLLYTNSAVGLLALG-SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVP 835 (1012)
Q Consensus 757 ~~~~~~~~~~i~~l~~s~~g~~l~~~~-~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 835 (1012)
....+..++++|+++.+++++ .++.+++||+... ..+.. +. ....+.
T Consensus 71 ------~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~----------------------~~~~~-~~---~~~~~~ 118 (300)
T TIGR03866 71 ------SGPDPELFALHPNGKILYIANEDDNLVTVIDIETR----------------------KVLAE-IP---VGVEPE 118 (300)
T ss_pred ------CCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCC----------------------eEEeE-ee---CCCCcc
Confidence 001134577889988776654 5789999976432 11111 11 223467
Q ss_pred EEEEeeCCCEEEEEc-CC-cEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEE-EEeCCCeEEEEEccCCeEeEEec
Q 001790 836 CIALSKNDSYVMSAT-GG-KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA-IGTEDSTIHIYNVRVDEVKSKLK 912 (1012)
Q Consensus 836 ~~~~s~dg~~la~~s-dg-~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la-s~~~dg~v~iwd~~~~~~~~~~~ 912 (1012)
+++|+|||++++++. ++ .+.+||..+++....... ...+..++|+| ++++|+ ++..++.|++||+.+++.+..+.
T Consensus 119 ~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~ 196 (300)
T TIGR03866 119 GMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTA-DGKELWVSSEIGGTVSVIDVATRKVIKKIT 196 (300)
T ss_pred eEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECC-CCCEEEEEcCCCCEEEEEEcCcceeeeeee
Confidence 899999999999887 43 477889988877665543 23457899999 777775 44569999999999998877664
Q ss_pred ccC-----C--CeEEEEEcCCCCEEEE-EeCCCcEEEEeCCCCCccccEEEecCCCCCCCCceEEEEcCCCCEEEEE--e
Q 001790 913 GHQ-----K--RITGLAFSTSLNILVS-SGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV--H 982 (1012)
Q Consensus 913 ~h~-----~--~V~~l~~spdg~~l~s-~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~--~ 982 (1012)
.+. . ....++|+|++++++. .+.++.+.+||+.+++...... .+ ..+.+++|+|+|++|+++ .
T Consensus 197 ~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~----~~---~~~~~~~~~~~g~~l~~~~~~ 269 (300)
T TIGR03866 197 FEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL----VG---QRVWQLAFTPDEKYLLTTNGV 269 (300)
T ss_pred ecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE----eC---CCcceEEECCCCCEEEEEcCC
Confidence 321 1 2346889999998554 4556789999999877543221 12 457899999999999886 3
Q ss_pred CCeEEEEECCCceEEEeecC-CCeeEEEecC
Q 001790 983 ETQLAIYDASKMERIRQVGS-PHICSIIFCN 1012 (1012)
Q Consensus 983 d~~i~vwd~~~~~~~~~~~~-~~i~~~~f~p 1012 (1012)
++.|.+||+.+++.+..+.. ....+++|+|
T Consensus 270 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 270 SNDVSVIDVAALKVIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred CCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence 78999999999999988875 6689999987
No 132
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=2e-22 Score=190.19 Aligned_cols=303 Identities=15% Similarity=0.212 Sum_probs=229.8
Q ss_pred EeecCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc-C
Q 001790 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-D 417 (1012)
Q Consensus 339 ~~~~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-d 417 (1012)
..-.|.+.|+++.+.+..-+|+.+|+.||.|.+||++.........+ +-+. .+ ......-.+|.-.|.++.|-| |
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i~k~-~c--~v~~~h~~~Hky~iss~~WyP~D 113 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-IAKH-KC--IVAKQHENGHKYAISSAIWYPID 113 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-eehe-ee--eccccCCccceeeeeeeEEeeec
Confidence 33459999999999997655899999999999999976542211000 0000 00 012223567999999999999 7
Q ss_pred CCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCC-ceEEEEEcCCCcEEEEe-CCCcceeeecCCcc
Q 001790 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNK-LLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1012)
Q Consensus 418 g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~-~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~ 495 (1012)
...+.+++.|.+++|||..+-+... .+ .-.+.|++-+|||-.. ..++|+|..|-.|++.| .+|..-+++.||.+
T Consensus 114 tGmFtssSFDhtlKVWDtnTlQ~a~---~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~ 189 (397)
T KOG4283|consen 114 TGMFTSSSFDHTLKVWDTNTLQEAV---DF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD 189 (397)
T ss_pred CceeecccccceEEEeecccceeeE---Ee-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC
Confidence 7788999999999999999866544 23 2466788888888543 33788899999999999 99999999999999
Q ss_pred CEEEEeccccCCceEEEEEecCCeEEEEEcCCC-Cceeee--------------cCCCCcEEEEEEccCCCeEEEeeecC
Q 001790 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDY--------------DAPGHWCTTMLYSADGSRLFSCGTSK 560 (1012)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~--------------~~~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1012)
.|.++.|+|..+ -.|++|+.||.|++||++.. .+...+ ..|.+.+..++|+.+|.++++++.
T Consensus 190 ~vlaV~Wsp~~e-~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt-- 266 (397)
T KOG4283|consen 190 GVLAVEWSPSSE-WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT-- 266 (397)
T ss_pred ceEEEEeccCce-eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC--
Confidence 999999998754 68899999999999999765 222222 345568999999999999999985
Q ss_pred CCCCcEEEEeCCCCeeeeeecC---CCC--C-cceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcce
Q 001790 561 DGDSFLVEWNESEGTIKRTYAG---FRK--K-SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1012)
Q Consensus 561 ~~~~~i~lwd~~~~~~~~~~~~---~~~--~-~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1012)
|..+++|+..+|+....-.+ +.+ . .+. +. +.+...++.--.++.+.++++-.+..+..+..+. ..+.|
T Consensus 267 --d~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~--k~i~c 340 (397)
T KOG4283|consen 267 --DDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHL--KRINC 340 (397)
T ss_pred --ccceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeeccc--ceeeE
Confidence 88999999988764322111 111 0 111 22 3344445554567999999999999999998774 48999
Q ss_pred eEeecCCCEEEEEECCCcEEEEEc
Q 001790 635 LRFSKEGNLLAVTTADNGFKILAN 658 (1012)
Q Consensus 635 v~~s~~g~~l~~~~~dg~i~iwd~ 658 (1012)
.++-|+-+...+|..|+.|..|-.
T Consensus 341 ~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 341 AAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred EeecCchhhhhccccCCccccccc
Confidence 999999999999999999999976
No 133
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.4e-21 Score=212.60 Aligned_cols=484 Identities=14% Similarity=0.149 Sum_probs=306.8
Q ss_pred EEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCC---CEEEEE
Q 001790 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG---NYVGVA 424 (1012)
Q Consensus 348 ~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg---~~las~ 424 (1012)
..-.||+|++.++.+ .+..|.||...+|.++.. +.+|..++..+.+.|.. .++.++
T Consensus 20 ~~avfSnD~k~l~~~--~~~~V~VyS~~Tg~~i~~-------------------l~~~~a~l~s~~~~~~~~~~~~~~~~ 78 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLC--TGNFVKVYSTATGECITS-------------------LEDHTAPLTSVIVLPSSENANYLIVC 78 (792)
T ss_pred cccccccCCcEEEEe--eCCEEEEEecchHhhhhh-------------------cccccCccceeeecCCCccceEEEEE
Confidence 345699999954443 368999999999998753 88899999999998854 467799
Q ss_pred ECCCeEEEEeecCCCcceeeee-eeccc-------cC-------------------------------------------
Q 001790 425 FTKHLIQLYSYAGSNDLRQHSQ-IDAHV-------GA------------------------------------------- 453 (1012)
Q Consensus 425 ~~d~~v~vwd~~~~~~~~~~~~-l~~h~-------~~------------------------------------------- 453 (1012)
+.||.|++||...+..++.+.. +..|. ..
T Consensus 79 sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~ 158 (792)
T KOG1963|consen 79 SLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLK 158 (792)
T ss_pred ecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhh
Confidence 9999999999988766542210 00000 00
Q ss_pred ----eEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCccee-e---ecCCccCEEEEeccccCCceEEEEEecCCeEEEEE
Q 001790 454 ----VNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF-N---FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524 (1012)
Q Consensus 454 ----v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~-~---~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd 524 (1012)
-.++.+++.|. +.....+..+.+|+ .++.... . -..|.-.+++.+++| ++.+++++..||.|.+|.
T Consensus 159 ~~~~~~~I~~~~~ge---~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp--n~~~~Aa~d~dGrI~vw~ 233 (792)
T KOG1963|consen 159 EHQEPKSIVDNNSGE---FKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP--NERYLAAGDSDGRILVWR 233 (792)
T ss_pred hhcCCccEEEcCCce---EEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEecc--ccceEEEeccCCcEEEEe
Confidence 01222222232 12222234556676 3322110 0 123666788889877 557999999999999995
Q ss_pred cCC----CCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEE
Q 001790 525 YDT----MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHF 600 (1012)
Q Consensus 525 ~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 600 (1012)
--. ......+.-|...|.+++|+++|.+|++|| .++.+.+|.+.+++ +.|-..-+.+|..+.++||+...
T Consensus 234 d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG----~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~ 307 (792)
T KOG1963|consen 234 DFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGG----REGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLY 307 (792)
T ss_pred ccccccccccceEEEecccccceeEEecCCceEeecc----cceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeE
Confidence 321 112334566778999999999999999999 49999999999988 44444445589999999999999
Q ss_pred EEEeCCCcEEEEeCCCCeeEEEEecCC---------CCCCcceeEeecCCCEEEEEECCCcEEEEEccCCceeeeccc--
Q 001790 601 LAVGEDSQIKFWDMDNVNILTSTDAEG---------GLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVE-- 669 (1012)
Q Consensus 601 ~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~-- 669 (1012)
+....|+.|.+..+.+......+.... ..+-.+.++++|.-+.++..+..|.|.+||+.+.....+...
T Consensus 308 sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~ 387 (792)
T KOG1963|consen 308 SLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCD 387 (792)
T ss_pred EEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEe
Confidence 999999999999887655544332211 122457789999778888999999999999987743322111
Q ss_pred C--Cccc-cccCccceeeeccccccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEE
Q 001790 670 N--PPFE-ALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEI 746 (1012)
Q Consensus 670 ~--~~~~-~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~ 746 (1012)
. .... ...-++.+++.+..|.++++..... ......+..-.+++|.....
T Consensus 388 ~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~---------------------------d~~~~~~~e~~LKFW~~n~~ 440 (792)
T KOG1963|consen 388 ENYSDGDVNIQVGITAVARSRFGSWMATLEARI---------------------------DKFNFFDGEVSLKFWQYNPN 440 (792)
T ss_pred ecccCCcceeEEeeeeehhhccceEEEEeeeee---------------------------hhhhccCceEEEEEEEEcCC
Confidence 1 1111 2334566677777777765432210 00011111245677776543
Q ss_pred eecCceEE-EecCCCCCCCCceEEEEEecC-cc-eEEEeeccCeeEeeeccccccCCCCCccccccceeeccCCCceeee
Q 001790 747 VDSGQCRL-VTMPESTDTSSKVVRLLYTNS-AV-GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAN 823 (1012)
Q Consensus 747 ~~~~~~~~-~~~~~~~~~~~~i~~l~~s~~-g~-~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 823 (1012)
...-.+.. +..| |...+...++.+. .. ..++++.||.+++|-+...+..... .+.....
T Consensus 441 ~kt~~L~T~I~~P----H~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~-------------~s~W~c~- 502 (792)
T KOG1963|consen 441 SKTFILNTKINNP----HGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKK-------------SSNWTCK- 502 (792)
T ss_pred cceeEEEEEEecC----CCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcC-------------ccceEEe-
Confidence 33222222 2223 6666555555443 33 7899999999999988654321111 1111111
Q ss_pred cccCCCCCCCEeEEEEeeCCCEEEEEcCCcEEEEEcCCC-eEEEEEcCCCCCeeEEEEecC-CCcEEEEEeCCCeEEEEE
Q 001790 824 DVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTF-KVMTTFMSPPPASTFLAFHPQ-DNNIIAIGTEDSTIHIYN 901 (1012)
Q Consensus 824 ~~~~~~~~~~v~~~~~s~dg~~la~~sdg~i~lwd~~~~-~~~~~~~~~~~~i~~l~~sp~-d~~~las~~~dg~v~iwd 901 (1012)
..+.-|..++++++||.||..|+++.+++|.+||..+. ...........++..+.+... .....+.....+.+.+|+
T Consensus 503 -~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WN 581 (792)
T KOG1963|consen 503 -AIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGALVHATQQRLSVWN 581 (792)
T ss_pred -eeeccccCcccchhhcCCCcEEEEecCCEEEEecCCChhhhhccccccccchHhHhhhcccccccceeeccCceEehHh
Confidence 00111788999999999999999999999999999884 333333222223333333210 011223344567899999
Q ss_pred ccCCeEeE
Q 001790 902 VRVDEVKS 909 (1012)
Q Consensus 902 ~~~~~~~~ 909 (1012)
+-+..+..
T Consensus 582 ll~~~l~w 589 (792)
T KOG1963|consen 582 LLSMSLIW 589 (792)
T ss_pred hhhhheec
Confidence 98877665
No 134
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=5.4e-23 Score=207.50 Aligned_cols=283 Identities=10% Similarity=0.157 Sum_probs=230.5
Q ss_pred cCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCC---eeeeeecCC-CCCcceEEEEecCCCEEEEEeCCCcEE
Q 001790 535 DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG---TIKRTYAGF-RKKSNGVVQFDTTQNHFLAVGEDSQIK 610 (1012)
Q Consensus 535 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~---~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~ 610 (1012)
..|+.-|.++++|...+++++|+ .|.|++||+... .++..+... .+..+.++.+.|||+.|++|++-.++.
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgG-----kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastls 490 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGG-----KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLS 490 (705)
T ss_pred hccCcEEEEEEecCCcceeEecC-----CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceee
Confidence 34677788999999999999997 889999999753 334444433 334688999999999999999999999
Q ss_pred EEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeeccccc
Q 001790 611 FWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSAS 690 (1012)
Q Consensus 611 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~ 690 (1012)
|||+...................+++.+||.+..+++..||.|.|||+.+. ...+.+++
T Consensus 491 iWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq-~~VrqfqG-------------------- 549 (705)
T KOG0639|consen 491 IWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ-TLVRQFQG-------------------- 549 (705)
T ss_pred eeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc-eeeecccC--------------------
Confidence 999987665444444343346788999999999999999999999999775 33333332
Q ss_pred cccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEE
Q 001790 691 SAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRL 770 (1012)
Q Consensus 691 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 770 (1012)
|.+.+.|+
T Consensus 550 ------------------------------------------------------------------------htDGascI 557 (705)
T KOG0639|consen 550 ------------------------------------------------------------------------HTDGASCI 557 (705)
T ss_pred ------------------------------------------------------------------------CCCCceeE
Confidence 77778899
Q ss_pred EEecCcceEEEeeccCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEEEc
Q 001790 771 LYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT 850 (1012)
Q Consensus 771 ~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s 850 (1012)
.+++||..|.+|+-|+++|.||+....+ +........|.++..+|.+.+|++|-
T Consensus 558 dis~dGtklWTGGlDntvRcWDlregrq--------------------------lqqhdF~SQIfSLg~cP~~dWlavGM 611 (705)
T KOG0639|consen 558 DISKDGTKLWTGGLDNTVRCWDLREGRQ--------------------------LQQHDFSSQIFSLGYCPTGDWLAVGM 611 (705)
T ss_pred EecCCCceeecCCCccceeehhhhhhhh--------------------------hhhhhhhhhheecccCCCccceeeec
Confidence 9999999999999999999998754332 11112566788999999999999998
Q ss_pred -CCcEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeEEecccCCCeEEEEEcCCCCE
Q 001790 851 -GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNI 929 (1012)
Q Consensus 851 -dg~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~ 929 (1012)
++.+.+... ++.....+..|...|.++.|++ -|+++++.+.|..+-.|...-|..+...+ ..+.|.+..+|-|.++
T Consensus 612 ens~vevlh~-skp~kyqlhlheScVLSlKFa~-cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddky 688 (705)
T KOG0639|consen 612 ENSNVEVLHT-SKPEKYQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKY 688 (705)
T ss_pred ccCcEEEEec-CCccceeecccccEEEEEEecc-cCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceE
Confidence 788988887 4555677778999999999999 99999999999999999999888777666 5678999999999999
Q ss_pred EEEEeCCCcEEEEeC
Q 001790 930 LVSSGADAQLCVWSI 944 (1012)
Q Consensus 930 l~s~s~Dg~i~vwd~ 944 (1012)
++||+.|+...||.+
T Consensus 689 IVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 689 IVTGSGDKKATVYEV 703 (705)
T ss_pred EEecCCCcceEEEEE
Confidence 999999998888865
No 135
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=5.4e-22 Score=189.57 Aligned_cols=242 Identities=15% Similarity=0.084 Sum_probs=188.3
Q ss_pred CCcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEeCCC
Q 001790 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (1012)
Q Consensus 405 h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd~~~ 484 (1012)
....|++|.|+|.+..|++++.||.+++||+...+... .-.|..++.+++|.++.+ +++|+-||.|+.+|...
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDLNT 84 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEecC
Confidence 35689999999999999999999999999999864333 235999999999998665 89999999999999655
Q ss_pred cceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCC
Q 001790 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1012)
Q Consensus 485 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 564 (1012)
.....+..|..+|.++...+.. ..+++|+.|++|++||.+.......+.... .|.++.. .|+.|++|+ .+.
T Consensus 85 ~~~~~igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v--~g~~LvVg~----~~r 155 (323)
T KOG1036|consen 85 GNEDQIGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDV--SGNRLVVGT----SDR 155 (323)
T ss_pred CcceeeccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEEec--cCCEEEEee----cCc
Confidence 5566777899999999987644 479999999999999998744444444333 6777665 466788877 489
Q ss_pred cEEEEeCCCCeeee-eecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCC----eeEEEEecCCC-------CCCc
Q 001790 565 FLVEWNESEGTIKR-TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV----NILTSTDAEGG-------LPNL 632 (1012)
Q Consensus 565 ~i~lwd~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~-------~~~v 632 (1012)
.+.+||+++..... .....-+-.+.++++-|++.-.++++-||.|.+=.++.. .....+..|.. .-+|
T Consensus 156 ~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPV 235 (323)
T KOG1036|consen 156 KVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPV 235 (323)
T ss_pred eEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEe
Confidence 99999998765433 222222336889999999999999999999988766554 22333333321 2268
Q ss_pred ceeEeecCCCEEEEEECCCcEEEEEccCCc
Q 001790 633 PRLRFSKEGNLLAVTTADNGFKILANAIGL 662 (1012)
Q Consensus 633 ~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~ 662 (1012)
++++|+|-...||+|+.||.|.+||+.+.+
T Consensus 236 Nai~Fhp~~~tfaTgGsDG~V~~Wd~~~rK 265 (323)
T KOG1036|consen 236 NAIAFHPIHGTFATGGSDGIVNIWDLFNRK 265 (323)
T ss_pred ceeEeccccceEEecCCCceEEEccCcchh
Confidence 999999999999999999999999987763
No 136
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.91 E-value=2e-22 Score=202.14 Aligned_cols=293 Identities=16% Similarity=0.234 Sum_probs=223.8
Q ss_pred CCCceEEEEEecCCC-cEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc-CCCE
Q 001790 343 QGSTVISMDFHPSHQ-TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNY 420 (1012)
Q Consensus 343 h~~~V~~~~~spdg~-~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~ 420 (1012)
+.+.|++++|+|... .++|+|.+.|.|-+||+.+.+..... ...+..|+.+|.++.|+| +-..
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~---------------v~~f~~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDG---------------VYLFTPHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCc---------------eEEeccCCccccceEecCCChhh
Confidence 788999999999876 78999999999999999744433221 134788999999999999 5678
Q ss_pred EEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe--CCCcceeeecCCccCEE
Q 001790 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVY 498 (1012)
Q Consensus 421 las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd--~~~~~~~~~~~h~~~v~ 498 (1012)
+.+.+.||+|+.-|++++..- ....+..-...+.++.|+.+.. .++.++.=|...+|| ..+.....+.-|...|.
T Consensus 250 i~ssSyDGtiR~~D~~~~i~e-~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNISE-EVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred eeeeccCceeeeeeecchhhH-HHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 889999999999999976422 2223433556688899998888 567777777999999 55666777888999999
Q ss_pred EEeccccCCceEEEEEecCCeEEEEEcCCCCcee----eecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCC--
Q 001790 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-- 572 (1012)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~-- 572 (1012)
+++++|-.. .++++++.|++.+|||++...... ....|...|.+..|||++-.|++.+ .|..|++||..
T Consensus 327 sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~----~D~~IRv~dss~~ 401 (498)
T KOG4328|consen 327 SVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC----QDNEIRVFDSSCI 401 (498)
T ss_pred eeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec----cCCceEEeecccc
Confidence 999998754 789999999999999998754433 4456778999999999988888887 59999999983
Q ss_pred --CCeeeeeecCCCCC----cceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcc-eeEeecCCCEEE
Q 001790 573 --EGTIKRTYAGFRKK----SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP-RLRFSKEGNLLA 645 (1012)
Q Consensus 573 --~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~~g~~l~ 645 (1012)
.-.+..++...... ......|.|+.+++++|..-..|-|+|-..++.+..+..+... .|. -..|+|-+..++
T Consensus 402 sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~-tI~~vn~~HP~~~~~~ 480 (498)
T KOG4328|consen 402 SAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESS-TIPSVNEFHPMRDTLA 480 (498)
T ss_pred cccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccc-ccccceeeccccccee
Confidence 23333333321110 2334789999999999999889999999999988776544322 344 358999877444
Q ss_pred -EEECCCcEEEEEcc
Q 001790 646 -VTTADNGFKILANA 659 (1012)
Q Consensus 646 -~~~~dg~i~iwd~~ 659 (1012)
.++..|.|+||...
T Consensus 481 aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 481 AGGNSSGKIYVFTNK 495 (498)
T ss_pred ccCCccceEEEEecC
Confidence 45557888888643
No 137
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=4.8e-21 Score=206.85 Aligned_cols=286 Identities=13% Similarity=0.169 Sum_probs=205.4
Q ss_pred eEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcc
Q 001790 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSN 588 (1012)
Q Consensus 509 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v 588 (1012)
..+++++.|+.+++||+.+++....+..+. .+.+++|+|+|+.+++++. .++.|++||..+++....+..+. .+
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~~--~~ 75 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCAS---DSDTIQVIDLATGEVIGTLPSGP--DP 75 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEEC---CCCeEEEEECCCCcEEEeccCCC--Cc
Confidence 478899999999999998887776666544 3678999999998765442 47899999999998877776543 34
Q ss_pred eEEEEecCCCEEEEE-eCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCc-EEEEEccCCceeee
Q 001790 589 GVVQFDTTQNHFLAV-GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG-FKILANAIGLRSLR 666 (1012)
Q Consensus 589 ~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~-i~iwd~~~~~~~~~ 666 (1012)
..++++|+++.++++ +.++.|++||+.+.+.+..+.... .+.+++|+|+|.++++++.++. +.+||..++.....
T Consensus 76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~---~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~ 152 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGV---EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDN 152 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCC---CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEE
Confidence 678999999987665 468999999999988777665322 4678999999999998887643 55556533210000
Q ss_pred cccCCccccccCccceeeeccccccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEE
Q 001790 667 AVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEI 746 (1012)
Q Consensus 667 ~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~ 746 (1012)
T Consensus 153 -------------------------------------------------------------------------------- 152 (300)
T TIGR03866 153 -------------------------------------------------------------------------------- 152 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCceEEEecCCCCCCCCceEEEEEecCcceEEEeeccCeeEeeeccccccCCCCCccccccceeeccCCCceeeeccc
Q 001790 747 VDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVA 826 (1012)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 826 (1012)
+ .
T Consensus 153 --------------------------------~---------------------------------------------~- 154 (300)
T TIGR03866 153 --------------------------------V---------------------------------------------L- 154 (300)
T ss_pred --------------------------------E---------------------------------------------E-
Confidence 0 0
Q ss_pred CCCCCCCEeEEEEeeCCCEEEEE-c-CCcEEEEEcCCCeEEEEEcCCC-----C--CeeEEEEecCCCcEEEE-EeCCCe
Q 001790 827 GVNLEEAVPCIALSKNDSYVMSA-T-GGKISLFNMMTFKVMTTFMSPP-----P--ASTFLAFHPQDNNIIAI-GTEDST 896 (1012)
Q Consensus 827 ~~~~~~~v~~~~~s~dg~~la~~-s-dg~i~lwd~~~~~~~~~~~~~~-----~--~i~~l~~sp~d~~~las-~~~dg~ 896 (1012)
......+++|++||++|+++ . ++.|++||+.+++.+..+..+. . ....++|+| +++++++ ...++.
T Consensus 155 ---~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~~~~~~~~~~~ 230 (300)
T TIGR03866 155 ---VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK-DGKTAFVALGPANR 230 (300)
T ss_pred ---cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECC-CCCEEEEEcCCCCe
Confidence 01112346777777766544 3 6778888888777665553221 1 235688999 7776444 455678
Q ss_pred EEEEEccCCeEeEEecccCCCeEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCCccccEEEecCCCCCCCCceEEEEcC
Q 001790 897 IHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSS-GADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNA 973 (1012)
Q Consensus 897 v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~-s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~ 973 (1012)
|.+||+.+++.+..+. +...+.+++|+|+|++|+++ +.++.|++||+.+++.+..+... ...+.++|+|
T Consensus 231 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-------~~~~~~~~~~ 300 (300)
T TIGR03866 231 VAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-------RLPWGVVVRP 300 (300)
T ss_pred EEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-------cccceeEeCC
Confidence 9999999988876654 44578999999999999876 56899999999999876655432 3447787765
No 138
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=5.5e-22 Score=199.04 Aligned_cols=293 Identities=14% Similarity=0.167 Sum_probs=225.1
Q ss_pred cccCeEEEEEeCCCCceEEEEEcCCCcEEEEeCCCc---ceeeecCCccCEEEEeccccCCce-EEEEEecCCeEEEEEc
Q 001790 450 HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR---KLFNFEGHEAPVYSICPHHKENIQ-FIFSTAIDGKIKAWLY 525 (1012)
Q Consensus 450 h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd~~~~---~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~~~dg~i~~wd~ 525 (1012)
-.+.|+++.|+|... ++++|+.|+++++|..+|+ .++.+.-...+|.+.+|.+. |. .+++++....+..||+
T Consensus 212 s~~~I~sv~FHp~~p--lllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~--G~~~i~~s~rrky~ysyDl 287 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAP--LLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPN--GHSVIFTSGRRKYLYSYDL 287 (514)
T ss_pred CcCCceEEEecCCCc--eEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCC--CceEEEecccceEEEEeec
Confidence 346799999999988 8999999999999995554 45555556778999999874 45 8899999999999999
Q ss_pred CCCCceeeecC---CCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEE
Q 001790 526 DTMGSRVDYDA---PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLA 602 (1012)
Q Consensus 526 ~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 602 (1012)
.+.+....-.. ....+....+++++++|+..+ ..|.|.+....+++.+.++.-.. .+..++|+.+++.|++
T Consensus 288 e~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G----~~G~I~lLhakT~eli~s~KieG--~v~~~~fsSdsk~l~~ 361 (514)
T KOG2055|consen 288 ETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAG----NNGHIHLLHAKTKELITSFKIEG--VVSDFTFSSDSKELLA 361 (514)
T ss_pred cccccccccCCCCcccchhheeEecCCCCeEEEcc----cCceEEeehhhhhhhhheeeecc--EEeeEEEecCCcEEEE
Confidence 88665443222 223577888999999999998 59999999999999998887543 6889999999999999
Q ss_pred EeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccce
Q 001790 603 VGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIES 682 (1012)
Q Consensus 603 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 682 (1012)
.+.+|.|++||++...++..+.-.+.. .-+.++.+++|.+||+|+..|.|.|||..+-......-.-.........|.+
T Consensus 362 ~~~~GeV~v~nl~~~~~~~rf~D~G~v-~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Its 440 (514)
T KOG2055|consen 362 SGGTGEVYVWNLRQNSCLHRFVDDGSV-HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITS 440 (514)
T ss_pred EcCCceEEEEecCCcceEEEEeecCcc-ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeee
Confidence 999999999999999999988766643 3367888899999999999999999997653221111111122334567899
Q ss_pred eeeccccccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCC
Q 001790 683 VALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTD 762 (1012)
Q Consensus 683 v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~ 762 (1012)
+.|++|++.++.+ +....+.+|+..+.... .--.+|....
T Consensus 441 l~Fn~d~qiLAia-----------------------------------S~~~knalrLVHvPS~T-----VFsNfP~~n~ 480 (514)
T KOG2055|consen 441 LQFNHDAQILAIA-----------------------------------SRVKKNALRLVHVPSCT-----VFSNFPTSNT 480 (514)
T ss_pred eeeCcchhhhhhh-----------------------------------hhccccceEEEecccee-----eeccCCCCCC
Confidence 9999999988632 22333555555543211 1113344344
Q ss_pred CCCceEEEEEecCcceEEEeeccCeeEeeec
Q 001790 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKW 793 (1012)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~ 793 (1012)
.-+.++|++|+|.|.+++.|..+|.+.+|.+
T Consensus 481 ~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 481 KVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred cccceEEEEecCCCceEEeecCCCceeeEee
Confidence 5678999999999999999999999999975
No 139
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=5.7e-22 Score=199.60 Aligned_cols=253 Identities=16% Similarity=0.226 Sum_probs=203.0
Q ss_pred eccCCCcceEEEEEcc-CCCEEEEEECCCeEEEEeecCCCcce-------eeeeeeccccCeEEEEEeCCCCceEEEEEc
Q 001790 401 IFKDVPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLR-------QHSQIDAHVGAVNDLAFAYPNKLLCVVTCG 472 (1012)
Q Consensus 401 ~~~~h~~~V~~v~~sp-dg~~las~~~d~~v~vwd~~~~~~~~-------~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~ 472 (1012)
....|.+.|..+.+-| +...+|+.+..+.|.|||...-.... .-.+|.+|.+.-++++|++.... .+++++
T Consensus 119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~ 197 (422)
T KOG0264|consen 119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGS 197 (422)
T ss_pred EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeecc
Confidence 3455999999999999 55677788888999999987533222 22368899998899999997765 799999
Q ss_pred CCCcEEEEeCC--Cc------ceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcC--CCCceeeecCCCCcEE
Q 001790 473 DDKLIKVWELS--GR------KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD--TMGSRVDYDAPGHWCT 542 (1012)
Q Consensus 473 ~d~~v~vwd~~--~~------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~--~~~~~~~~~~~~~~v~ 542 (1012)
.|++|++||.+ +. +...+.+|...|..++|++... .++++++.|+.+.+||.+ +.+.......|.+.+.
T Consensus 198 ~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn 276 (422)
T KOG0264|consen 198 DDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVN 276 (422)
T ss_pred CCCcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCcee
Confidence 99999999922 22 2456789999999999998754 689999999999999999 4555667788999999
Q ss_pred EEEEccCCCeE-EEeeecCCCCCcEEEEeCCCC-eeeeeecCCCCCcceEEEEecCC-CEEEEEeCCCcEEEEeCCCCee
Q 001790 543 TMLYSADGSRL-FSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNI 619 (1012)
Q Consensus 543 ~~~~s~~~~~l-~~~~~~~~~~~~i~lwd~~~~-~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~ 619 (1012)
+++|+|-+.++ |+++ .|++|.+||+++. +++.++.+|.. .|..+.|+|.. ..|++++.|+.+.+||+..-..
T Consensus 277 ~~~fnp~~~~ilAT~S----~D~tV~LwDlRnL~~~lh~~e~H~d-ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~ 351 (422)
T KOG0264|consen 277 CVAFNPFNEFILATGS----ADKTVALWDLRNLNKPLHTFEGHED-EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGE 351 (422)
T ss_pred EEEeCCCCCceEEecc----CCCcEEEeechhcccCceeccCCCc-ceEEEEeCCCCCceeEecccCCcEEEEecccccc
Confidence 99999966655 5555 4999999999975 46788888887 89999999976 5677788999999999864222
Q ss_pred ------------EEEEecCCCCCCcceeEeecCCC-EEEEEECCCcEEEEEccC
Q 001790 620 ------------LTSTDAEGGLPNLPRLRFSKEGN-LLAVTTADNGFKILANAI 660 (1012)
Q Consensus 620 ------------~~~~~~~~~~~~v~~v~~s~~g~-~l~~~~~dg~i~iwd~~~ 660 (1012)
-..+...+|...|..+.|+|+.. .+++.++|+.+.||....
T Consensus 352 eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 352 EQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 12355567888999999999655 567888999999999864
No 140
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.1e-21 Score=202.84 Aligned_cols=281 Identities=14% Similarity=0.217 Sum_probs=214.9
Q ss_pred ccCCCCCccceEeec-CCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCC
Q 001790 328 WSLDDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1012)
Q Consensus 328 ~~~~~~~~~~~~~~~-h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1012)
-++.++|..+...+. |++.|.|+...|.|. +||+|+.||+|+||.+.+|.++.+.. -.
T Consensus 383 ~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~TgRcvr~~~--------------------~d 441 (733)
T KOG0650|consen 383 KDLRPFPTRCALVYRGHTGLVRSISVDPSGE-WLASGSDDGTVRIWEIATGRCVRTVQ--------------------FD 441 (733)
T ss_pred hhcCCCcceeeeeEeccCCeEEEEEecCCcc-eeeecCCCCcEEEEEeecceEEEEEe--------------------ec
Confidence 356777777776665 999999999999999 79999999999999999999986421 24
Q ss_pred cceEEEEEccCCC--EEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEE----cCCCcEEEE
Q 001790 407 ISVSRVAWSPDGN--YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC----GDDKLIKVW 480 (1012)
Q Consensus 407 ~~V~~v~~spdg~--~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~----~~d~~v~vw 480 (1012)
+.|.||+|+|.++ .||++-. ..+.|-+..-|..+....+ .. .|+++ ..|+.+..|
T Consensus 442 ~~I~~vaw~P~~~~~vLAvA~~-~~~~ivnp~~G~~~e~~~t----------------~e--ll~~~~~~~~p~~~~~~W 502 (733)
T KOG0650|consen 442 SEIRSVAWNPLSDLCVLAVAVG-ECVLIVNPIFGDRLEVGPT----------------KE--LLASAPNESEPDAAVVTW 502 (733)
T ss_pred ceeEEEEecCCCCceeEEEEec-CceEEeCccccchhhhcch----------------hh--hhhcCCCccCCcccceee
Confidence 5899999999765 4444433 3366666555433221100 01 12222 345678889
Q ss_pred e-CCC----cceeeecCCccCEEEEeccccCCceEEEEEecC---CeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCe
Q 001790 481 E-LSG----RKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSR 552 (1012)
Q Consensus 481 d-~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 552 (1012)
. ... .-+...-.|...|..+.||. .|.+|++...+ ..|.|.++.......-+....+.+.++.|+|...+
T Consensus 503 ~~~~~~e~~~~v~~~I~~~k~i~~vtWHr--kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~ 580 (733)
T KOG0650|consen 503 SRASLDELEKGVCIVIKHPKSIRQVTWHR--KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPY 580 (733)
T ss_pred chhhhhhhccceEEEEecCCccceeeeec--CCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCce
Confidence 8 311 11344556899999999987 45699887654 57889988877777667777888999999999999
Q ss_pred EEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCC-eeEEEEecCCCCCC
Q 001790 553 LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV-NILTSTDAEGGLPN 631 (1012)
Q Consensus 553 l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~ 631 (1012)
+++++ ...|++||+..+++++.+..... .+..++++|.|..|+.|+.|+.+..+|+.-. ++.+.+..+. ..
T Consensus 581 lfVaT-----q~~vRiYdL~kqelvKkL~tg~k-wiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~--~a 652 (733)
T KOG0650|consen 581 LFVAT-----QRSVRIYDLSKQELVKKLLTGSK-WISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHE--KA 652 (733)
T ss_pred EEEEe-----ccceEEEehhHHHHHHHHhcCCe-eeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhh--hh
Confidence 99987 78899999999888887776555 7899999999999999999999999999754 4555565544 37
Q ss_pred cceeEeecCCCEEEEEECCCcEEEEEc
Q 001790 632 LPRLRFSKEGNLLAVTTADNGFKILAN 658 (1012)
Q Consensus 632 v~~v~~s~~g~~l~~~~~dg~i~iwd~ 658 (1012)
+++|+|++.-.++++|+.||++.|+.-
T Consensus 653 vr~Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 653 VRSVAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred hhhhhhccccceeeeecCCCcEEEEee
Confidence 999999999999999999999999863
No 141
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.2e-21 Score=186.87 Aligned_cols=250 Identities=14% Similarity=0.236 Sum_probs=189.7
Q ss_pred eEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcce
Q 001790 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL 487 (1012)
Q Consensus 409 V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~ 487 (1012)
..|+.||+.|.+||+|+.||.|.|||+.|...-+ .+.+|..+|++++||+||+ .|+|+|.|..|.+|| ..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999976444 6889999999999999999 899999999999999 999998
Q ss_pred eeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeee-cCCCC---cEEEEEEccCCCeEEEeeecCCCC
Q 001790 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPGH---WCTTMLYSADGSRLFSCGTSKDGD 563 (1012)
Q Consensus 488 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~~---~v~~~~~s~~~~~l~~~~~~~~~~ 563 (1012)
+.+. ..++|+.+.|+|......+++--. ..-.+-++........- ...+. ...+..|.+.|+++++|. ..
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~~~-~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGt----sK 174 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATIME-ESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGT----SK 174 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEEec-CCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEec----Cc
Confidence 8877 678999999999877655555443 33444454442222211 11111 223346889999999998 48
Q ss_pred CcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCC-------eeE--EEEecCCCCCCcce
Q 001790 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV-------NIL--TSTDAEGGLPNLPR 634 (1012)
Q Consensus 564 ~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-------~~~--~~~~~~~~~~~v~~ 634 (1012)
|.+.++|..+.+++..++-.....|..+.++..|+.|+.-+.|..|+.|+++.- ++. +.++---....-.+
T Consensus 175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred ceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 999999999999998888766447888999999999999999999999997631 111 11100000112357
Q ss_pred eEeecCCCEEEEEEC-CCcEEEEEccCCceeeecccC
Q 001790 635 LRFSKEGNLLAVTTA-DNGFKILANAIGLRSLRAVEN 670 (1012)
Q Consensus 635 v~~s~~g~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~ 670 (1012)
++|+.+|.+++.++. ...++||....| .+.+.+.|
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~G-sLVKILhG 290 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIG-SLVKILHG 290 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCc-ceeeeecC
Confidence 889999999988775 567999998777 45554444
No 142
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=3.8e-21 Score=209.33 Aligned_cols=266 Identities=14% Similarity=0.187 Sum_probs=222.8
Q ss_pred CCCcceEEEEEccCCCEEEEEECCCeEEEEeecCC-CcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-
Q 001790 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS-NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE- 481 (1012)
Q Consensus 404 ~h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~-~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd- 481 (1012)
+|...-+.|+|.|+|.+|.+|+.||.|++|+.... +... ++..+...|.+++.. +. .|++|+.+++|.+|.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~---ti~~~g~~v~~ia~~--s~--~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE---TIDISGELVSSIACY--SN--HFLTGSEQNTVLRYKF 83 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc---hhhccCceeEEEeec--cc--ceEEeeccceEEEeeC
Confidence 58888999999999999999999999999998765 3333 233477788887764 44 699999999999999
Q ss_pred CCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCC
Q 001790 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKD 561 (1012)
Q Consensus 482 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 561 (1012)
.++..-..+...+-++.+++++. +|.+++.|+.|-.|++-++........+.+|.++|.++.|+|.+++|++..
T Consensus 84 ps~~~~~iL~Rftlp~r~~~v~g--~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss---- 157 (933)
T KOG1274|consen 84 PSGEEDTILARFTLPIRDLAVSG--SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSS---- 157 (933)
T ss_pred CCCCccceeeeeeccceEEEEec--CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEe----
Confidence 66666555556677899999854 778999999999999999999999999999999999999999999999988
Q ss_pred CCCcEEEEeCCCCeeeeeecCCC-------CCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcce
Q 001790 562 GDSFLVEWNESEGTIKRTYAGFR-------KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1012)
Q Consensus 562 ~~~~i~lwd~~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1012)
.+|.|++||+.++.+..++.+-. ...+..++|+|++..+++.+.|+.|.+|+..+++....+........+.+
T Consensus 158 ~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~ 237 (933)
T KOG1274|consen 158 CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSD 237 (933)
T ss_pred cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEE
Confidence 49999999999998877766432 22456689999999999999999999999999999988877666656899
Q ss_pred eEeecCCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeeccccccc
Q 001790 635 LRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSA 692 (1012)
Q Consensus 635 v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l 692 (1012)
++|+|+|.+||+++.+|.|.|||..+-.+ + .....|.+++|.|++..+
T Consensus 238 ~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-------~---~~~~~Vc~~aw~p~~n~i 285 (933)
T KOG1274|consen 238 LQWSPNGKYIAASTLDGQILVWNVDTHER-------H---EFKRAVCCEAWKPNANAI 285 (933)
T ss_pred EEEcCCCcEEeeeccCCcEEEEecccchh-------c---cccceeEEEecCCCCCee
Confidence 99999999999999999999999986211 1 122347888888887665
No 143
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=3.1e-23 Score=218.97 Aligned_cols=235 Identities=17% Similarity=0.329 Sum_probs=212.5
Q ss_pred ccCCCcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe
Q 001790 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1012)
Q Consensus 402 ~~~h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd 481 (1012)
+..|...|.|+..-..++.+++|+.|..+-+|.+.....+. .+.+|..+|.++.|+++.. ++++|+.+|+|++||
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeee
Confidence 44488899999987789999999999999999987665554 5889999999999999988 899999999999999
Q ss_pred -CCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecC
Q 001790 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1012)
Q Consensus 482 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1012)
..++.++++.||...+.++.|+|. +.+.++|+.|+.+++||.+..++...+..|...+..+.|+|+|++++.++
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P~--~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~--- 173 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHPY--GEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGG--- 173 (825)
T ss_pred hhhhhhhhhhhccccCcceeeeccc--eEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccC---
Confidence 899999999999999999999885 47889999999999999999999999999999999999999999999998
Q ss_pred CCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecC
Q 001790 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1012)
Q Consensus 561 ~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 640 (1012)
+|..+++||...|+....|..|.. .+..+.|+|..-.++.|+.|+++++||+++.+.+...... ...|.+..|+|+
T Consensus 174 -ed~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~ 249 (825)
T KOG0267|consen 174 -EDNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFNPD 249 (825)
T ss_pred -Ccceeeeecccccccccccccccc-cccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeecCC
Confidence 489999999999999999999987 7888999999989999999999999999998888777654 447999999999
Q ss_pred CCEEEEEECC
Q 001790 641 GNLLAVTTAD 650 (1012)
Q Consensus 641 g~~l~~~~~d 650 (1012)
+..+++|...
T Consensus 250 ~~~~~~G~q~ 259 (825)
T KOG0267|consen 250 GKIVLSGEQI 259 (825)
T ss_pred ceeeecCchh
Confidence 9999888665
No 144
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=7.3e-21 Score=179.69 Aligned_cols=225 Identities=13% Similarity=0.169 Sum_probs=172.5
Q ss_pred ccCCCcceEEEEEcc-CCCEEEEEECCCeEEEEeecCCCcce------------eeeeeeccccCeEEEEEeCCCCceEE
Q 001790 402 FKDVPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLR------------QHSQIDAHVGAVNDLAFAYPNKLLCV 468 (1012)
Q Consensus 402 ~~~h~~~V~~v~~sp-dg~~las~~~d~~v~vwd~~~~~~~~------------~~~~l~~h~~~v~~l~~s~~~~~~~l 468 (1012)
...|.+.|.++...+ .|+|+++|+.||.|.|||++.....+ ....-.+|.-.|.++.|-|-..- .+
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG-mF 117 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG-MF 117 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc-ee
Confidence 455999999999998 79999999999999999998654211 01112478889999999996554 78
Q ss_pred EEEcCCCcEEEEe-CCCcceeeecCCccCEEEEeccccCC-ceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEE
Q 001790 469 VTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKEN-IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLY 546 (1012)
Q Consensus 469 ~s~~~d~~v~vwd-~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~ 546 (1012)
.+++.|.+++||| .+-+....|. ..+.|++-+++|-.. -.++++|..+-.|++.|+.++.....+.+|.+.|.++.|
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEW 196 (397)
T ss_pred ecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEe
Confidence 9999999999999 6666655554 556677777776544 246777888889999999999999999999999999999
Q ss_pred ccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEe-c
Q 001790 547 SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD-A 625 (1012)
Q Consensus 547 s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~ 625 (1012)
+|...+++..+. .|+.|++||++.. .|.+++.|..+++....++ .
T Consensus 197 sp~~e~vLatgs---aDg~irlWDiRra-------------------------------sgcf~~lD~hn~k~~p~~~~n 242 (397)
T KOG4283|consen 197 SPSSEWVLATGS---ADGAIRLWDIRRA-------------------------------SGCFRVLDQHNTKRPPILKTN 242 (397)
T ss_pred ccCceeEEEecC---CCceEEEEEeecc-------------------------------cceeEEeecccCccCcccccc
Confidence 999998776553 5999999998642 1122233333322222222 3
Q ss_pred CCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCCc
Q 001790 626 EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGL 662 (1012)
Q Consensus 626 ~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~ 662 (1012)
..+.+.|+.++|+.+|.++++++.|..+++|+..+|.
T Consensus 243 ~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 243 TAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred ccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 3456689999999999999999999999999988773
No 145
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.6e-21 Score=201.54 Aligned_cols=238 Identities=10% Similarity=0.162 Sum_probs=178.1
Q ss_pred ceeccCCCcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEE
Q 001790 399 ASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1012)
Q Consensus 399 ~~~~~~h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~ 478 (1012)
..++.||.+.|.||...|.|.+||+|+.||+|+||.+.+|.|++... -.+.|.|++|+|.+...+||.+- +..+.
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~----~d~~I~~vaw~P~~~~~vLAvA~-~~~~~ 467 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ----FDSEIRSVAWNPLSDLCVLAVAV-GECVL 467 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe----ecceeEEEEecCCCCceeEEEEe-cCceE
Confidence 45789999999999999999999999999999999999999998542 35579999999998875555554 44477
Q ss_pred EEe-CCCcceeeecCCccCEEEEeccccCCceEEEEE----ecCCeEEEEEcCCCC----ceeeecCCCCcEEEEEEccC
Q 001790 479 VWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFST----AIDGKIKAWLYDTMG----SRVDYDAPGHWCTTMLYSAD 549 (1012)
Q Consensus 479 vwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----~~dg~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~~ 549 (1012)
|-+ .-|..+..-.. . ..|+++ ..++.+..|.-.... .+.....+...|..+.|+..
T Consensus 468 ivnp~~G~~~e~~~t--~-------------ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk 532 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGPT--K-------------ELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK 532 (733)
T ss_pred EeCccccchhhhcch--h-------------hhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC
Confidence 777 44432221110 0 111111 234567778544211 12344457778999999999
Q ss_pred CCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCC
Q 001790 550 GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629 (1012)
Q Consensus 550 ~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (1012)
|.+|++...++ +...|.|.++..+....-|....+ .+.++.|+|...++++++.. .|+|||+....+++.+... .
T Consensus 533 GDYlatV~~~~-~~~~VliHQLSK~~sQ~PF~kskG-~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~tg--~ 607 (733)
T KOG0650|consen 533 GDYLATVMPDS-GNKSVLIHQLSKRKSQSPFRKSKG-LVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLLTG--S 607 (733)
T ss_pred CceEEEeccCC-CcceEEEEecccccccCchhhcCC-ceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHhcC--C
Confidence 99999987543 467889999988777766655444 78899999999999888754 8999999887777666533 3
Q ss_pred CCcceeEeecCCCEEEEEECCCcEEEEEccCC
Q 001790 630 PNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1012)
Q Consensus 630 ~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~ 661 (1012)
..|..++.+|.|..|+.|+.|+.+..+|+.-.
T Consensus 608 kwiS~msihp~GDnli~gs~d~k~~WfDldls 639 (733)
T KOG0650|consen 608 KWISSMSIHPNGDNLILGSYDKKMCWFDLDLS 639 (733)
T ss_pred eeeeeeeecCCCCeEEEecCCCeeEEEEcccC
Confidence 37899999999999999999999999998654
No 146
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=2.2e-21 Score=202.34 Aligned_cols=286 Identities=18% Similarity=0.224 Sum_probs=209.9
Q ss_pred cCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEECCCeEEEE
Q 001790 354 PSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLY 433 (1012)
Q Consensus 354 pdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~v~vw 433 (1012)
|+.+++||.+..||.|.++|......... ..+......|.+.|..+.|-|....|++++.|.++++|
T Consensus 61 ~n~eHiLavadE~G~i~l~dt~~~~fr~e-------------e~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~W 127 (720)
T KOG0321|consen 61 PNKEHILAVADEDGGIILFDTKSIVFRLE-------------ERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPW 127 (720)
T ss_pred CCccceEEEecCCCceeeecchhhhcchh-------------hhhhcccccccceeEeeccCCCceeEEEccCCceeeee
Confidence 45667999999999999999865332200 00112356799999999999977789999999999999
Q ss_pred eecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe--CCCcc-------------------------
Q 001790 434 SYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRK------------------------- 486 (1012)
Q Consensus 434 d~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd--~~~~~------------------------- 486 (1012)
|+++++..... .+.||.+.|.+++|.|++.. .|++|+.||.|.||| .++.-
T Consensus 128 dvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k 205 (720)
T KOG0321|consen 128 DVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK 205 (720)
T ss_pred eeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc
Confidence 99998877643 46799999999999999887 899999999999999 33310
Q ss_pred -eeeecCCccCEEE----EeccccCCceEEEEEec-CCeEEEEEcCCCCceee--------ecCC---CCcEEEEEEccC
Q 001790 487 -LFNFEGHEAPVYS----ICPHHKENIQFIFSTAI-DGKIKAWLYDTMGSRVD--------YDAP---GHWCTTMLYSAD 549 (1012)
Q Consensus 487 -~~~~~~h~~~v~~----~~~~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~--------~~~~---~~~v~~~~~s~~ 549 (1012)
+.....+...|.+ +.| .|...|++++. |+.|++||++....... +..+ ...+.++.....
T Consensus 206 r~~k~kA~s~ti~ssvTvv~f---kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss 282 (720)
T KOG0321|consen 206 RIRKWKAASNTIFSSVTVVLF---KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS 282 (720)
T ss_pred cccccccccCceeeeeEEEEE---eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC
Confidence 1111233333433 333 24468888887 99999999987544322 2222 236778888888
Q ss_pred CCeEEEeeecCCCCCcEEEEeCCCCe--eeeeecCCCCCcceE-EEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecC
Q 001790 550 GSRLFSCGTSKDGDSFLVEWNESEGT--IKRTYAGFRKKSNGV-VQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (1012)
Q Consensus 550 ~~~l~~~~~~~~~~~~i~lwd~~~~~--~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1012)
|.+|++.+. |+.|++|++.+-. ++..+.++....++. -..+|++.++++|+.|...++|.+.+.+.-..+. .
T Consensus 283 Gt~L~AsCt----D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l-~ 357 (720)
T KOG0321|consen 283 GTYLFASCT----DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL-L 357 (720)
T ss_pred CCeEEEEec----CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh-h
Confidence 899888874 9999999997643 444555544323222 4568999999999999999999998765533322 2
Q ss_pred CCCCCcceeEeecC-CCEEEEEECCCcEEEEEccCCc
Q 001790 627 GGLPNLPRLRFSKE-GNLLAVTTADNGFKILANAIGL 662 (1012)
Q Consensus 627 ~~~~~v~~v~~s~~-g~~l~~~~~dg~i~iwd~~~~~ 662 (1012)
+|...|++++|.|. -.-++++++|..+++|++.++.
T Consensus 358 Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 358 GHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred CcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 55568999999983 3457788999999999997663
No 147
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.3e-20 Score=177.89 Aligned_cols=255 Identities=11% Similarity=0.155 Sum_probs=192.7
Q ss_pred eccCCCcceEEEEEccCCCEEEEEECCCeEEEEeecCC-CcceeeeeeeccccCeEEEEEeCC--CCceEEEEEcCCCcE
Q 001790 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS-NDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLI 477 (1012)
Q Consensus 401 ~~~~h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~-~~~~~~~~l~~h~~~v~~l~~s~~--~~~~~l~s~~~d~~v 477 (1012)
+-.+|.+-|.++.|.+.|+.+|+|+.|++|+|||...+ .........+.|.+.|..+.|.+. |+ .+|+++.|+++
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv 85 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTV 85 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCce
Confidence 35679999999999999999999999999999996543 233444467899999999999875 66 89999999999
Q ss_pred EEEeCC--C--------cceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceee------ec------
Q 001790 478 KVWELS--G--------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD------YD------ 535 (1012)
Q Consensus 478 ~vwd~~--~--------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~------~~------ 535 (1012)
.||... . ....++......|+.+.|.|..-|-.+++++.||.+|||+.-....... +.
T Consensus 86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence 999831 1 1124566677889999999998899999999999999998654322211 11
Q ss_pred -CCCCcEEEEEEccC---CCeEEEeeec-CCCCCcEEEEeCCCC----eeeeeecCCCCCcceEEEEecCC----CEEEE
Q 001790 536 -APGHWCTTMLYSAD---GSRLFSCGTS-KDGDSFLVEWNESEG----TIKRTYAGFRKKSNGVVQFDTTQ----NHFLA 602 (1012)
Q Consensus 536 -~~~~~v~~~~~s~~---~~~l~~~~~~-~~~~~~i~lwd~~~~----~~~~~~~~~~~~~v~~~~~s~~~----~~l~~ 602 (1012)
.+..+..|+.|+|. ..+|++++.+ ...-+.+.||....+ ..+.++.++.. +|+.++|.|+- ..|++
T Consensus 166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d-pI~di~wAPn~Gr~y~~lAv 244 (361)
T KOG2445|consen 166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD-PIRDISWAPNIGRSYHLLAV 244 (361)
T ss_pred ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC-cceeeeeccccCCceeeEEE
Confidence 23447789999874 3467777631 112246778865443 34556777776 89999999964 56888
Q ss_pred EeCCCcEEEEeCCCCe-----------------eEEEE-ecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEcc
Q 001790 603 VGEDSQIKFWDMDNVN-----------------ILTST-DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1012)
Q Consensus 603 ~~~dg~i~iwd~~~~~-----------------~~~~~-~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~ 659 (1012)
++.|| |+||.+.... .+..+ ...+|.+.|..+.|+-.|..|++.+.||.||+|...
T Consensus 245 A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 245 ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 99999 9999986311 11222 245677799999999999999999999999999753
No 148
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.1e-21 Score=209.26 Aligned_cols=249 Identities=14% Similarity=0.219 Sum_probs=196.9
Q ss_pred ceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc-CCCEEEEE
Q 001790 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYVGVA 424 (1012)
Q Consensus 346 ~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~las~ 424 (1012)
.+..|.|+.--..+||+++..|.|.+||+.....- + +...|..|...|.++.|++ ...+|++|
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rn--k--------------~l~~f~EH~Rs~~~ldfh~tep~iliSG 152 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRN--K--------------LLTVFNEHERSANKLDFHSTEPNILISG 152 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccc--h--------------hhhHhhhhccceeeeeeccCCccEEEec
Confidence 45667777655558999999999999999752110 0 1134888999999999999 56788999
Q ss_pred ECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe--CCCcceeeecCCccCEEEEec
Q 001790 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSICP 502 (1012)
Q Consensus 425 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd--~~~~~~~~~~~h~~~v~~~~~ 502 (1012)
+.||+|++||+...+... ++.+....|+++.|+|...+ .|+++.+.|.+.+|| ...++...+.+|.++|.++.|
T Consensus 153 SQDg~vK~~DlR~~~S~~---t~~~nSESiRDV~fsp~~~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nw 228 (839)
T KOG0269|consen 153 SQDGTVKCWDLRSKKSKS---TFRSNSESIRDVKFSPGYGN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNW 228 (839)
T ss_pred CCCceEEEEeeecccccc---cccccchhhhceeeccCCCc-eEEEecCCceEEEeeccCchhHHHHhhcccCceEEEee
Confidence 999999999999876555 56778899999999997655 899999999999999 556777889999999999999
Q ss_pred cccCCceEEEEEecCCeEEEEEcCCCCceeeecC-CCCcEEEEEEccCCCeE-EEeeecCCCCCcEEEEeCCCCe-eeee
Q 001790 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-PGHWCTTMLYSADGSRL-FSCGTSKDGDSFLVEWNESEGT-IKRT 579 (1012)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l-~~~~~~~~~~~~i~lwd~~~~~-~~~~ 579 (1012)
+| ++.+||+||.|++|+|||+.+......... ...++..+.|-|+..+. ++++.. .|..|++||++..- +..+
T Consensus 229 hP--nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv--~dtsV~VWDvrRPYIP~~t 304 (839)
T KOG0269|consen 229 HP--NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMV--VDTSVHVWDVRRPYIPYAT 304 (839)
T ss_pred cC--CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhcc--ccceEEEEeecccccccee
Confidence 98 668999999999999999986554443333 34589999999987754 444432 58899999998754 4566
Q ss_pred ecCCCCCcceEEEEec-CCCEEEEEeCCCcEEEEeCCCCee
Q 001790 580 YAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNI 619 (1012)
Q Consensus 580 ~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~ 619 (1012)
+..|+. .++.++|.. |...+.+++.||.|..-.+++...
T Consensus 305 ~~eH~~-~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~ 344 (839)
T KOG0269|consen 305 FLEHTD-SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATT 344 (839)
T ss_pred eeccCc-cccceeccCCCceeeEeecCccHHHHhhhhcccC
Confidence 777776 788898865 456788899999887766665443
No 149
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.2e-20 Score=188.89 Aligned_cols=252 Identities=13% Similarity=0.144 Sum_probs=194.2
Q ss_pred ceEEEEEcc-------CCCEEEEEECCCeEEEEeecCCCcceeeeee------------------eccccCeEEEEEeCC
Q 001790 408 SVSRVAWSP-------DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI------------------DAHVGAVNDLAFAYP 462 (1012)
Q Consensus 408 ~V~~v~~sp-------dg~~las~~~d~~v~vwd~~~~~~~~~~~~l------------------~~h~~~v~~l~~s~~ 462 (1012)
.-.|++|-. .|+|+|.|..|..|.|||+.-...+....+| .+|+..|.+++|+..
T Consensus 175 fPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~ 254 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN 254 (463)
T ss_pred cchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc
Confidence 335666633 3689999999999999998744333222222 379999999999988
Q ss_pred CCceEEEEEcCCCcEEEEe-CCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcE
Q 001790 463 NKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWC 541 (1012)
Q Consensus 463 ~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v 541 (1012)
-++ .|||||.|.+|++|| .+|++..++..|.+.|.++.|++.. ..+|++|+.|++|.+.|.+........-...+.|
T Consensus 255 ~~n-VLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~-p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~V 332 (463)
T KOG0270|consen 255 FRN-VLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYE-PSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEV 332 (463)
T ss_pred cce-eEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCC-ceEEEeccccceEEeeeccCccccCceEEeccce
Confidence 877 899999999999999 9999999999999999999999874 5899999999999999998533222211234568
Q ss_pred EEEEEccCCCeEEEeeecCCCCCcEEEEeCCCC-eeeeeecCCCCCcceEEEEecCC-CEEEEEeCCCcEEEEeCCCCee
Q 001790 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNI 619 (1012)
Q Consensus 542 ~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~-~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~ 619 (1012)
-.++|.|.....+.++. .+|+|+-+|++.. +++.++..|.+ .|.++++++.- ..+++++.|+.|++|++.....
T Consensus 333 Ekv~w~~~se~~f~~~t---ddG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 333 EKVAWDPHSENSFFVST---DDGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP 408 (463)
T ss_pred EEEEecCCCceeEEEec---CCceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence 89999998887777665 6999999999875 89999999988 89999998765 5677889999999999876444
Q ss_pred EEEEecCCCCCCcceeEeecC-CCEEEEEECCCcEEEEEccCCceee
Q 001790 620 LTSTDAEGGLPNLPRLRFSKE-GNLLAVTTADNGFKILANAIGLRSL 665 (1012)
Q Consensus 620 ~~~~~~~~~~~~v~~v~~s~~-g~~l~~~~~dg~i~iwd~~~~~~~~ 665 (1012)
.......-..+...|.++.|+ ...+|.|+..+.+++||+.+.....
T Consensus 409 ~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 409 KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred cccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 222211111224567777775 3567888888899999998764433
No 150
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=4.8e-20 Score=175.71 Aligned_cols=263 Identities=13% Similarity=0.200 Sum_probs=195.0
Q ss_pred cCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc--CCC
Q 001790 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGN 419 (1012)
Q Consensus 342 ~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~ 419 (1012)
+|.+-|.|+.|.+-|++ +|+++.|++|+|||.+....-.. .....+.|.+.|..|.|.+ -|+
T Consensus 11 ~h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W~---------------~Ts~Wrah~~Si~rV~WAhPEfGq 74 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGTWS---------------CTSSWRAHDGSIWRVVWAHPEFGQ 74 (361)
T ss_pred CCcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCceE---------------EeeeEEecCCcEEEEEecCccccc
Confidence 58889999999999996 89999999999999755432211 1123667999999999977 689
Q ss_pred EEEEEECCCeEEEEeecC------CCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCc------c
Q 001790 420 YVGVAFTKHLIQLYSYAG------SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR------K 486 (1012)
Q Consensus 420 ~las~~~d~~v~vwd~~~------~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~------~ 486 (1012)
.+|+|+.|+++.||.=.. +.......++......|+++.|.|....+.+|+++.||.++||+ .+-- .
T Consensus 75 vvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~L 154 (361)
T KOG2445|consen 75 VVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTL 154 (361)
T ss_pred eEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchh
Confidence 999999999999997521 11222334566778899999999987777999999999999999 4321 1
Q ss_pred eeeec-------CCccCEEEEeccccCCc-eEEEEEecC-----CeEEEEEcCCCCce----eeecCCCCcEEEEEEccC
Q 001790 487 LFNFE-------GHEAPVYSICPHHKENI-QFIFSTAID-----GKIKAWLYDTMGSR----VDYDAPGHWCTTMLYSAD 549 (1012)
Q Consensus 487 ~~~~~-------~h~~~v~~~~~~~~~~~-~~l~s~~~d-----g~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~~ 549 (1012)
...+. .+..+..|+.|+++.-. .+|+.|+.+ +.++||........ .++..+..+|+.++|.|+
T Consensus 155 q~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 155 QHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred hhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence 22222 46667888888765422 456666655 48899987665533 256688899999999995
Q ss_pred C----CeEEEeeecCCCCCcEEEEeCCCC--------------------eeeeeecCCCCCcceEEEEecCCCEEEEEeC
Q 001790 550 G----SRLFSCGTSKDGDSFLVEWNESEG--------------------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE 605 (1012)
Q Consensus 550 ~----~~l~~~~~~~~~~~~i~lwd~~~~--------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 605 (1012)
- ..|++++ +|| |+||.++.. +.+..+.+|.. .+..+.|+-.|..|.+.|.
T Consensus 235 ~Gr~y~~lAvA~----kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~-~VWrv~wNmtGtiLsStGd 308 (361)
T KOG2445|consen 235 IGRSYHLLAVAT----KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG-EVWRVRWNMTGTILSSTGD 308 (361)
T ss_pred cCCceeeEEEee----cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC-ceEEEEEeeeeeEEeecCC
Confidence 3 3567776 577 999998731 23344566665 8999999999999999999
Q ss_pred CCcEEEEeCCCC---eeEEEEecC
Q 001790 606 DSQIKFWDMDNV---NILTSTDAE 626 (1012)
Q Consensus 606 dg~i~iwd~~~~---~~~~~~~~~ 626 (1012)
||.|++|...-. ++...+...
T Consensus 309 DG~VRLWkany~n~~kC~sv~~~e 332 (361)
T KOG2445|consen 309 DGCVRLWKANYNNLWKCTSVLKAE 332 (361)
T ss_pred CceeeehhhhhhhhheeeeEEecc
Confidence 999999986543 344444443
No 151
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=3.3e-22 Score=211.29 Aligned_cols=232 Identities=11% Similarity=0.195 Sum_probs=208.6
Q ss_pred CCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001790 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1012)
Q Consensus 343 h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 422 (1012)
|...|.|+..-..++ .+++|+.|..+-+|.+..-..+.+ +.+|..+|.|+.|+++..+|+
T Consensus 27 hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S-------------------~~~hespIeSl~f~~~E~Lla 86 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAITS-------------------LTGHESPIESLTFDTSERLLA 86 (825)
T ss_pred hhhhhceeeeeccce-eeccCCCceeeccccccCCchhhe-------------------eeccCCcceeeecCcchhhhc
Confidence 788899999866777 799999999999999855433322 788999999999999999999
Q ss_pred EEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCCccCEEEEe
Q 001790 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1012)
Q Consensus 423 s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~v~~~~ 501 (1012)
+|+.+|+|++||++.++.++ +|.+|...+.++.|+|-+. ++++|+.|+.+++|| ....+...+.+|...+..+.
T Consensus 87 agsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~ 161 (825)
T KOG0267|consen 87 AGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR 161 (825)
T ss_pred ccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEEEe
Confidence 99999999999999998887 7889999999999999999 889999999999999 77889999999999999999
Q ss_pred ccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeec
Q 001790 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1012)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~ 581 (1012)
|.| +|.+++++++|.++++||+..++....+..|...+.++.|+|..-+++.|+. |+++++||+++.+.+....
T Consensus 162 lsP--~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~I~s~~ 235 (825)
T KOG0267|consen 162 LSP--DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEVISSGK 235 (825)
T ss_pred ecC--CCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEEeeccC
Confidence 966 7799999999999999999999999999999999999999999988888884 9999999999988888777
Q ss_pred CCCCCcceEEEEecCCCEEEEEeCC
Q 001790 582 GFRKKSNGVVQFDTTQNHFLAVGED 606 (1012)
Q Consensus 582 ~~~~~~v~~~~~s~~~~~l~~~~~d 606 (1012)
.... .|.+.+|+|++..+++|...
T Consensus 236 ~~~~-~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 236 PETD-GVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CccC-CceeeeecCCceeeecCchh
Confidence 6655 79999999999988887654
No 152
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=4.4e-21 Score=204.63 Aligned_cols=296 Identities=12% Similarity=0.150 Sum_probs=223.6
Q ss_pred CCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc-CCCEEE
Q 001790 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYVG 422 (1012)
Q Consensus 344 ~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~la 422 (1012)
+....++...++-..+ +.++ ...+.||.+....... ++.+.. ..-..---.+..|.|+. +.++||
T Consensus 39 k~~~nAIs~nr~~~qi-v~AG-rs~lklyai~~~~~~~--~~~~~~----------k~kqn~~~S~~DVkW~~~~~NlIA 104 (839)
T KOG0269|consen 39 KAKANAISVNRDINQI-VVAG-RSLLKLYAINPNDFSE--KCNHRF----------KTKQNKFYSAADVKWGQLYSNLIA 104 (839)
T ss_pred ccccceEeecCCccee-EEec-ccceeeEeeCcccCCc--ceeeec----------ccccceeeehhhcccccchhhhhe
Confidence 3467788888888764 4444 4577788775433211 111000 00000112455678876 778999
Q ss_pred EEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCCccCEEEEe
Q 001790 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1012)
Q Consensus 423 s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~v~~~~ 501 (1012)
|++..|.|.+||+...-.-.....+..|...++++.|++...+ +|++||.||+|++|| ...+...++.+....|..+.
T Consensus 105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~ 183 (839)
T KOG0269|consen 105 TCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVK 183 (839)
T ss_pred eecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCcc-EEEecCCCceEEEEeeecccccccccccchhhhcee
Confidence 9999999999999873222333357899999999999998877 899999999999999 77778888888899999999
Q ss_pred ccccCCceEEEEEecCCeEEEEEcCCCC-ceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeee
Q 001790 502 PHHKENIQFIFSTAIDGKIKAWLYDTMG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1012)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~ 580 (1012)
|+|.. +..++++.+.|.+++||++... ....+..|.++|.++.|+|++.+|++|| .|+.|+|||..+.+.....
T Consensus 184 fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGG----RDK~vkiWd~t~~~~~~~~ 258 (839)
T KOG0269|consen 184 FSPGY-GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGG----RDKMVKIWDMTDSRAKPKH 258 (839)
T ss_pred eccCC-CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecC----CCccEEEEeccCCCcccee
Confidence 99875 5789999999999999998754 4557889999999999999999999999 5999999999887766666
Q ss_pred cCCCCCcceEEEEecCCCE-EEEEe--CCCcEEEEeCCCCee-EEEEecCCCCCCcceeEeec-CCCEEEEEECCCcEEE
Q 001790 581 AGFRKKSNGVVQFDTTQNH-FLAVG--EDSQIKFWDMDNVNI-LTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKI 655 (1012)
Q Consensus 581 ~~~~~~~v~~~~~s~~~~~-l~~~~--~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s~-~g~~l~~~~~dg~i~i 655 (1012)
.-++..++..+.|-|...+ |++++ .|-.|+|||+...-. ..++.. |...++.++|.. |...+.+++.||++..
T Consensus 259 tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~e--H~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 259 TINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLE--HTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred EEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeec--cCccccceeccCCCceeeEeecCccHHHH
Confidence 6666668999999998765 44444 588999999976533 344443 444789999976 5667888999988865
Q ss_pred EEccCC
Q 001790 656 LANAIG 661 (1012)
Q Consensus 656 wd~~~~ 661 (1012)
-...+.
T Consensus 337 h~~kna 342 (839)
T KOG0269|consen 337 HLFKNA 342 (839)
T ss_pred hhhhcc
Confidence 544443
No 153
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.86 E-value=6.4e-20 Score=191.50 Aligned_cols=462 Identities=12% Similarity=0.133 Sum_probs=289.7
Q ss_pred ceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEeCCCcce
Q 001790 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKL 487 (1012)
Q Consensus 408 ~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd~~~~~~ 487 (1012)
.|..++|-|||..|+.+..+ .+.+||...|..+. ++++|...|++++|+.||+ .+++|+.|+.|.+|+..-+-+
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llq---tLKgHKDtVycVAys~dGk--rFASG~aDK~VI~W~~klEG~ 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQ---PLKGHKDTVYCVAYAKDGK--RFASGSADKSVIIWTSKLEGI 87 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCccccc---ccccccceEEEEEEccCCc--eeccCCCceeEEEecccccce
Confidence 79999999999999887555 59999999998776 7999999999999999999 899999999999999332222
Q ss_pred eeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEE
Q 001790 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1012)
Q Consensus 488 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 567 (1012)
..+ .|.+.|.|+.|+|-. ..|++++-. ..-+|..+.... ........+.+.+|..||.+++.|. .+|+|.
T Consensus 88 LkY-SH~D~IQCMsFNP~~--h~LasCsLs-dFglWS~~qK~V--~K~kss~R~~~CsWtnDGqylalG~----~nGTIs 157 (1081)
T KOG1538|consen 88 LKY-SHNDAIQCMSFNPIT--HQLASCSLS-DFGLWSPEQKSV--SKHKSSSRIICCSWTNDGQYLALGM----FNGTIS 157 (1081)
T ss_pred eee-ccCCeeeEeecCchH--HHhhhcchh-hccccChhhhhH--HhhhhheeEEEeeecCCCcEEEEec----cCceEE
Confidence 233 499999999998754 678777653 355686543221 1122345789999999999999998 489998
Q ss_pred EEeCCCCeeeee--ecCCCCCcceEEEEecCC-----CEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecC
Q 001790 568 EWNESEGTIKRT--YAGFRKKSNGVVQFDTTQ-----NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1012)
Q Consensus 568 lwd~~~~~~~~~--~~~~~~~~v~~~~~s~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 640 (1012)
+-+- +++.... -.+....+|.+++|+|.. ..+++.....++.++.+. |+.+..-..-+. ...|+.+-++
T Consensus 158 iRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~F--dP~CisYf~N 233 (1081)
T KOG1538|consen 158 IRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNF--DPCCISYFTN 233 (1081)
T ss_pred eecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCC--CchhheeccC
Confidence 8864 3333222 234445589999999964 356666777777777774 444332211121 3478999999
Q ss_pred CCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeeccccccccccCCCCCccccccCCCCCCccccCCCC
Q 001790 641 GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDP 720 (1012)
Q Consensus 641 g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1012)
|.++..|+.|+.+.+|.-..- .+
T Consensus 234 GEy~LiGGsdk~L~~fTR~Gv--rL------------------------------------------------------- 256 (1081)
T KOG1538|consen 234 GEYILLGGSDKQLSLFTRDGV--RL------------------------------------------------------- 256 (1081)
T ss_pred CcEEEEccCCCceEEEeecCe--EE-------------------------------------------------------
Confidence 999999999999998853211 00
Q ss_pred CCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeeccCeeEeeeccccccCC
Q 001790 721 TSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNP 800 (1012)
Q Consensus 721 ~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~ 800 (1012)
|++ .+ ....|+.++..|+++.++.|..||+|..|++.......
T Consensus 257 ---------------GTv-------------------g~---~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ 299 (1081)
T KOG1538|consen 257 ---------------GTV-------------------GE---QDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHG 299 (1081)
T ss_pred ---------------eec-------------------cc---cceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhhh
Confidence 000 00 34578999999999999999999999999875432110
Q ss_pred CCCcccc-----ccceeeccCCCceeeecccCCCCCCCEeE------EEEeeCCCEEEEEcCCcEEEEEcCCCeEEEEEc
Q 001790 801 SGKATAS-----AVPQHWLPSSGLLMANDVAGVNLEEAVPC------IALSKNDSYVMSATGGKISLFNMMTFKVMTTFM 869 (1012)
Q Consensus 801 ~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~------~~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~ 869 (1012)
--..... ..+-+-.+.++ ....|.| +++ -.+.||+--...|.+|.+.+++....-.
T Consensus 300 ly~~RYA~R~sMtDVivQhLi~~-----------qkvrIkC~DLVkKiai--YrnrLAVQLpeki~iYel~se~~~~mhY 366 (1081)
T KOG1538|consen 300 LYKDRYAYRDSMTDVIVQHLITE-----------QKVRIKCKDLVKKIAI--YRNRLAVQLPEKILIYELYSEDLSDMHY 366 (1081)
T ss_pred hhHHhhhhhhhhHHHHHHHHhhc-----------ceeeeeHHHHHHHHHh--hhhhheecccceEEEEeccccccccchh
Confidence 0000000 00001111111 1112211 221 2345666666778899887665432110
Q ss_pred C------CCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeEEecccCCCeEEEEE--cCC-CCEEEEEeCCCcEE
Q 001790 870 S------PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAF--STS-LNILVSSGADAQLC 940 (1012)
Q Consensus 870 ~------~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~--spd-g~~l~s~s~Dg~i~ 940 (1012)
. ..-...-+.+. ++.++ .+.+..+..+|...-+. ..+. ..+-|.-+.. -|- ..-|+.|..||.|.
T Consensus 367 ~v~ekI~kkf~cSLlVVc---~~HiV-lCqekrLqClDF~Gvk~-ReW~-M~S~iRYikV~GGP~gREgL~vGlknGqV~ 440 (1081)
T KOG1538|consen 367 RVKEKIIKKFECSLLVVC---ANHIV-LCQEKRLQCLDFSGVKE-REWQ-MESLIRYIKVIGGPPGREGLLVGLKNGQVL 440 (1081)
T ss_pred HHHHHHHhhccceEEEEE---cCeEE-EEcccceeeecccchhh-hhhh-HHHHHHhhhhhcCCCCcceeEEEecCCcEE
Confidence 0 01112223332 23344 34567777777653211 1111 0111111111 122 34577788888765
Q ss_pred EEeCCCCCccccEEEecCCCCCCCCceEEEEcCCCCEEEEEe-CCeEEEEECCCceEEEeecCCCeeEEEec
Q 001790 941 VWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQVGSPHICSIIFC 1011 (1012)
Q Consensus 941 vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~-d~~i~vwd~~~~~~~~~~~~~~i~~~~f~ 1011 (1012)
--=+++.-++ -+.. ....|.++..+..-+.|++.. .+...++|+.+++.+.+= ..+++++|.
T Consensus 441 kiF~dN~~Pi-----Ll~~--~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~elL~QE--pg~nSV~wN 503 (1081)
T KOG1538|consen 441 KIFVDNLFPI-----LLLK--QATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKELLFQE--PGANSVAWN 503 (1081)
T ss_pred EEEecCCchh-----heec--ccceeEEeeccCCcceEEEEccCCeEEEEEccCCceEeec--CCCceEEee
Confidence 3334442221 1111 126789999999999999985 568889999999987444 466777764
No 154
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=4.3e-21 Score=214.61 Aligned_cols=297 Identities=15% Similarity=0.251 Sum_probs=227.3
Q ss_pred eEEEEEecCCCcEEEEecC----------CCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc
Q 001790 347 VISMDFHPSHQTLLLVGSS----------NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1012)
Q Consensus 347 V~~~~~spdg~~llasg~~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 416 (1012)
-..++|||++..++|+|.. +.++.||.+.-.... ..+...--..-......++|.+
T Consensus 9 ta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~--------------~dlk~~~s~~s~~rF~kL~W~~ 74 (1049)
T KOG0307|consen 9 TATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDES--------------SDLKPVGSLQSSNRFNKLAWGS 74 (1049)
T ss_pred cceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcc--------------ccccccccccccccceeeeecc
Confidence 3457899999877888754 334455544321111 0000000111345788899999
Q ss_pred CCCE----EEEEECCCeEEEEeecC---CCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCccee
Q 001790 417 DGNY----VGVAFTKHLIQLYSYAG---SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF 488 (1012)
Q Consensus 417 dg~~----las~~~d~~v~vwd~~~---~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~ 488 (1012)
.|.. ||.|..||.|.+||... +.....+.+...|.+.|..+.|++...+ ++|+|+.||.|.||| .+-+.-.
T Consensus 75 ~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~iWDlnn~~tP~ 153 (1049)
T KOG0307|consen 75 YGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEILIWDLNKPETPF 153 (1049)
T ss_pred cCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEEEeccCCcCCCC
Confidence 7766 88999999999999875 4444455567889999999999999887 899999999999999 4433333
Q ss_pred ee--cCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCC--cEEEEEEccCCCeEEEeeecCCCCC
Q 001790 489 NF--EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDS 564 (1012)
Q Consensus 489 ~~--~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~~~ 564 (1012)
++ ....+.|.+++|+.. ...+|++++.+|++.|||++..+.+..+..+.. .+..++|+|++..-+....+.+..-
T Consensus 154 ~~~~~~~~~eI~~lsWNrk-vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~P 232 (1049)
T KOG0307|consen 154 TPGSQAPPSEIKCLSWNRK-VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAP 232 (1049)
T ss_pred CCCCCCCcccceEeccchh-hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCc
Confidence 33 224578999999754 457899999999999999999888777766554 5889999998875554445666788
Q ss_pred cEEEEeCCCC-eeeeeecCCCCCcceEEEEecCC-CEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCC
Q 001790 565 FLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN 642 (1012)
Q Consensus 565 ~i~lwd~~~~-~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~ 642 (1012)
.|.+||++.. ..++++++|.. .|.++.|++.+ .++++++.|+.|.+|+.++++.+..+...+. .+..+.|.|...
T Consensus 233 viqlWDlR~assP~k~~~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n--W~fdv~w~pr~P 309 (1049)
T KOG0307|consen 233 VIQLWDLRFASSPLKILEGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN--WCFDVQWCPRNP 309 (1049)
T ss_pred eeEeecccccCCchhhhccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc--ceeeeeecCCCc
Confidence 9999998864 56778888877 78899999977 7888999999999999999999999987544 789999999655
Q ss_pred -EEEEEECCCcEEEEEccCCc
Q 001790 643 -LLAVTTADNGFKILANAIGL 662 (1012)
Q Consensus 643 -~l~~~~~dg~i~iwd~~~~~ 662 (1012)
.++.++-||.|.|+.+.+..
T Consensus 310 ~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 310 SVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred chhhhheeccceeeeeeecCC
Confidence 88899999999999987653
No 155
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=1.5e-19 Score=179.10 Aligned_cols=305 Identities=15% Similarity=0.208 Sum_probs=215.1
Q ss_pred ecCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCE
Q 001790 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1012)
Q Consensus 341 ~~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 420 (1012)
.+...+|..+.|.++....+|||+.|..|+||.+..+..-... . ...-...+..|...|+++.|+|+|.+
T Consensus 10 wH~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~-~---------~V~y~s~Ls~H~~aVN~vRf~p~gel 79 (434)
T KOG1009|consen 10 WHDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD-M---------KVEYLSSLSRHTRAVNVVRFSPDGEL 79 (434)
T ss_pred ecCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc-e---------eEEEeecccCCcceeEEEEEcCCcCe
Confidence 3345699999999988757999999999999998765432210 0 00112458889999999999999999
Q ss_pred EEEEECCCeEEEEeec--------C-----CCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcc
Q 001790 421 VGVAFTKHLIQLYSYA--------G-----SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK 486 (1012)
Q Consensus 421 las~~~d~~v~vwd~~--------~-----~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~ 486 (1012)
||+|+.+|.|.+|... + .+.......+.+|...|..++|+|++. ++++++-|.++++|| ..|..
T Consensus 80 LASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~l 157 (434)
T KOG1009|consen 80 LASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQL 157 (434)
T ss_pred eeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEecccee
Confidence 9999999999999876 3 122333446789999999999999999 899999999999999 99999
Q ss_pred eeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeec-------------------CCC----CcEEE
Q 001790 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-------------------APG----HWCTT 543 (1012)
Q Consensus 487 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-------------------~~~----~~v~~ 543 (1012)
+..+.+|...+..++|.| -++++++-+.|...+.+.+...+...... .|. .....
T Consensus 158 ~~~~~dh~~yvqgvawDp--l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrR 235 (434)
T KOG1009|consen 158 LAILDDHEHYVQGVAWDP--LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRR 235 (434)
T ss_pred Eeeccccccccceeecch--hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhh
Confidence 999999999999999966 44788888888866666554432221110 011 13456
Q ss_pred EEEccCCCeEEEeeecCCC-----CCcEEEEeCCC-CeeeeeecCCCCCcceEEEEecC-----------------CCEE
Q 001790 544 MLYSADGSRLFSCGTSKDG-----DSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTT-----------------QNHF 600 (1012)
Q Consensus 544 ~~~s~~~~~l~~~~~~~~~-----~~~i~lwd~~~-~~~~~~~~~~~~~~v~~~~~s~~-----------------~~~l 600 (1012)
++|+|||.++++....-.- -+..++++-.. .++...+.+... ....+.++|- -+.+
T Consensus 236 lsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k-~~lavr~~pVy~elrp~~~~~~~~~lpyrlv 314 (434)
T KOG1009|consen 236 LSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKK-PALAVRFSPVYYELRPLSSEKFLFVLPYRLV 314 (434)
T ss_pred cccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCc-ceEEEEeeeeEEEeccccccccccccccceE
Confidence 7899999999875421111 12334444332 122333333322 3333333330 1233
Q ss_pred EEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCC
Q 001790 601 LAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1012)
Q Consensus 601 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~ 661 (1012)
++......|++||.++..++..... -|...++.++|++||..++..+.||...+..++..
T Consensus 315 faiAt~~svyvydtq~~~P~~~v~n-ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 315 FAIATKNSVYVYDTQTLEPLAVVDN-IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred EEEeecceEEEeccccccceEEEee-eeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 3334455899999998877776643 23458999999999999999999999887766543
No 156
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.85 E-value=5.4e-17 Score=185.94 Aligned_cols=372 Identities=22% Similarity=0.390 Sum_probs=282.1
Q ss_pred eeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCc-ceeeecCCcc-CEEEEeccccCCce-EEEEEec-CCeEE
Q 001790 447 IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR-KLFNFEGHEA-PVYSICPHHKENIQ-FIFSTAI-DGKIK 521 (1012)
Q Consensus 447 l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~-~~~~~~~h~~-~v~~~~~~~~~~~~-~l~s~~~-dg~i~ 521 (1012)
+..|...+..+.|.+.+. .++.++.|+.+.+|+ ..+. .+..+.++.. .+..+.+. ..++. .++..+. |+.+.
T Consensus 61 ~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 61 LRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccEE
Confidence 557999999999999999 788888999999999 5554 6677776443 67777764 44555 5555444 99999
Q ss_pred EEEcCC-CCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCC-E
Q 001790 522 AWLYDT-MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN-H 599 (1012)
Q Consensus 522 ~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~ 599 (1012)
+|+... ......+..|...+..++|+|+++.+++++. .++.+++|+...+..+..+.+|.. .+..++++|++. .
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 213 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS---LDGTIKLWDLRTGKPLSTLAGHTD-PVSSLAFSPDGGLL 213 (466)
T ss_pred EEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC---CCCceEEEEcCCCceEEeeccCCC-ceEEEEEcCCcceE
Confidence 999988 6777788889999999999999998877752 389999999999888888888766 899999999998 4
Q ss_pred EEEEeCCCcEEEEeCCCCeeEE-EEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCCceeeecccCCccccccC
Q 001790 600 FLAVGEDSQIKFWDMDNVNILT-STDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRT 678 (1012)
Q Consensus 600 l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 678 (1012)
+++++.|+.|++||...+.... .+..+.. .. ...|++++..+++++.|+.+++|+...........
T Consensus 214 ~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---------- 280 (466)
T COG2319 214 IASGSSDGTIRLWDLSTGKLLRSTLSGHSD--SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL---------- 280 (466)
T ss_pred EEEecCCCcEEEEECCCCcEEeeecCCCCc--ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE----------
Confidence 4555899999999988777776 4544333 32 22799999899999999999999987542200000
Q ss_pred ccceeeeccccccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecC
Q 001790 679 PIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMP 758 (1012)
Q Consensus 679 ~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~ 758 (1012)
T Consensus 281 -------------------------------------------------------------------------------- 280 (466)
T COG2319 281 -------------------------------------------------------------------------------- 280 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCceEEEEEecCcceEEEeeccCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEE
Q 001790 759 ESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIA 838 (1012)
Q Consensus 759 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 838 (1012)
.+|...+.++.+.|++..+++++.|+.+.+|+...... ..... ...|...+..+.
T Consensus 281 --~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----------------------~~~~~-~~~~~~~~~~~~ 335 (466)
T COG2319 281 --SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL----------------------LSSLT-LKGHEGPVSSLS 335 (466)
T ss_pred --ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce----------------------EEEee-ecccCCceEEEE
Confidence 01567788889999888888888888889996543221 11000 011555788888
Q ss_pred EeeCCCEEEEE-c-CCcEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEE-EeCCCeEEEEEccCCeEeEEecccC
Q 001790 839 LSKNDSYVMSA-T-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI-GTEDSTIHIYNVRVDEVKSKLKGHQ 915 (1012)
Q Consensus 839 ~s~dg~~la~~-s-dg~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las-~~~dg~v~iwd~~~~~~~~~~~~h~ 915 (1012)
+++++..++.+ . |+.+.+|+.............. .+..+.+++ + ..+.. +..++.+.+|+............+.
T Consensus 336 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (466)
T COG2319 336 FSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT 412 (466)
T ss_pred ECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCCC
Confidence 84333566665 4 7889999998877333333222 288999998 7 55554 7899999999999988877766554
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001790 916 KRITGLAFSTSLNILVSSGADAQLCVWSIDT 946 (1012)
Q Consensus 916 ~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~ 946 (1012)
..+....+++++..+++++.++.+++|+..+
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 413 SRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 7899999999999999999999999999988
No 157
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.84 E-value=1.4e-19 Score=188.92 Aligned_cols=312 Identities=14% Similarity=0.270 Sum_probs=206.9
Q ss_pred CCCeEEEeeecCCCCCcEEEEeCCCCeee------eeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEE
Q 001790 549 DGSRLFSCGTSKDGDSFLVEWNESEGTIK------RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTS 622 (1012)
Q Consensus 549 ~~~~l~~~~~~~~~~~~i~lwd~~~~~~~------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 622 (1012)
..+.++..+ +++|.|.++|.+..... +.+..|.. .|..+.|-|....|++++.|.++++||++..++...
T Consensus 62 n~eHiLava---dE~G~i~l~dt~~~~fr~ee~~lk~~~aH~n-AifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~ 137 (720)
T KOG0321|consen 62 NKEHILAVA---DEDGGIILFDTKSIVFRLEERQLKKPLAHKN-AIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGG 137 (720)
T ss_pred CccceEEEe---cCCCceeeecchhhhcchhhhhhcccccccc-eeEeeccCCCceeEEEccCCceeeeeeeccceeecc
Confidence 344444444 37999999998765433 44455655 788899999778899999999999999999998877
Q ss_pred EecCCCCCCcceeEeec-CCCEEEEEECCCcEEEEEccCCce-eeecccCCccccccCccceeeeccccccccccCCCCC
Q 001790 623 TDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKILANAIGLR-SLRAVENPPFEALRTPIESVALKVSASSAVSSGTPAN 700 (1012)
Q Consensus 623 ~~~~~~~~~v~~v~~s~-~g~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~ 700 (1012)
-...+|...|.+++|.| +...|++|+.||.|.|||+.-... ....+.......+.+.
T Consensus 138 ~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~--------------------- 196 (720)
T KOG0321|consen 138 RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTA--------------------- 196 (720)
T ss_pred eeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCC---------------------
Confidence 55557777999999999 556889999999999999865420 1111110000000000
Q ss_pred ccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEE---EEEecCcc
Q 001790 701 CKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVR---LLYTNSAV 777 (1012)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~---l~~s~~g~ 777 (1012)
+ .+.... ...++-|. .+...|.+ +.+..|..
T Consensus 197 -------p-tpskp~-------------------~kr~~k~k-------------------A~s~ti~ssvTvv~fkDe~ 230 (720)
T KOG0321|consen 197 -------P-TPSKPL-------------------KKRIRKWK-------------------AASNTIFSSVTVVLFKDES 230 (720)
T ss_pred -------C-CCCchh-------------------hccccccc-------------------cccCceeeeeEEEEEeccc
Confidence 0 000000 01222222 24444444 55666777
Q ss_pred eEEEeec-cCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccC-CCCCCCEeEEEEeeCCCEEEEEc-CCcE
Q 001790 778 GLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAG-VNLEEAVPCIALSKNDSYVMSAT-GGKI 854 (1012)
Q Consensus 778 ~l~~~~~-dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~dg~~la~~s-dg~i 854 (1012)
.|++++. |+.|+|||+.+......++..... .+.. ......+.++.....|.+|.+.+ |+.|
T Consensus 231 tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~---------------~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sI 295 (720)
T KOG0321|consen 231 TLASAGAADSTIKVWDLRKNYTAYRQEPRGSD---------------KYPTHSKRSVGQVNLILDSSGTYLFASCTDNSI 295 (720)
T ss_pred eeeeccCCCcceEEEeecccccccccCCCccc---------------CccCcccceeeeEEEEecCCCCeEEEEecCCcE
Confidence 7888887 999999999875432222211110 0000 01244577788878888886555 9999
Q ss_pred EEEEcCCCeE--EEEEcCCCCC--eeEEEEecCCCcEEEEEeCCCeEEEEEccCCe-EeEEecccCCCeEEEEEcCCC-C
Q 001790 855 SLFNMMTFKV--MTTFMSPPPA--STFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE-VKSKLKGHQKRITGLAFSTSL-N 928 (1012)
Q Consensus 855 ~lwd~~~~~~--~~~~~~~~~~--i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~-~~~~~~~h~~~V~~l~~spdg-~ 928 (1012)
++||+.+... +..+.++... -..-..+| ++.+|++|+.|...++|.+.+.+ ....+.||.-.|++++|.|.. .
T Consensus 296 y~ynm~s~s~sP~~~~sg~~~~sf~vks~lSp-d~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t 374 (720)
T KOG0321|consen 296 YFYNMRSLSISPVAEFSGKLNSSFYVKSELSP-DDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATT 374 (720)
T ss_pred EEEeccccCcCchhhccCcccceeeeeeecCC-CCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCC
Confidence 9999976532 3333333321 12234688 99999999999999999998764 455678999999999998753 3
Q ss_pred EEEEEeCCCcEEEEeCCCC
Q 001790 929 ILVSSGADAQLCVWSIDTW 947 (1012)
Q Consensus 929 ~l~s~s~Dg~i~vwd~~~~ 947 (1012)
-++++++|.+++||++..+
T Consensus 375 ~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 375 PVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred CceeeccCcceEEEeccCc
Confidence 4777799999999999664
No 158
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=1.4e-16 Score=182.64 Aligned_cols=290 Identities=27% Similarity=0.438 Sum_probs=220.2
Q ss_pred EeecCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCc-eecccccccccccccCccccceeccCCC-cceEEEEE-c
Q 001790 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRD-RLVSKPFKIWDMAACSLPFQASIFKDVP-ISVSRVAW-S 415 (1012)
Q Consensus 339 ~~~~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~-s 415 (1012)
....|...|.++.|.+.+. .++.++.|+.+.+|+...+. .... +.++. ..+..+.+ +
T Consensus 60 ~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~ 119 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIKS-------------------LEGLHDSSVSKLALSS 119 (466)
T ss_pred eeeeccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCceeEEE-------------------EeccCCCceeeEEEEC
Confidence 3445889999999999999 67888889999999998775 2221 33322 46777777 8
Q ss_pred cCCC-EEEEEEC-CCeEEEEeecC-CCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcC-CCcEEEEe-CCCcceeee
Q 001790 416 PDGN-YVGVAFT-KHLIQLYSYAG-SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-DKLIKVWE-LSGRKLFNF 490 (1012)
Q Consensus 416 pdg~-~las~~~-d~~v~vwd~~~-~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~-d~~v~vwd-~~~~~~~~~ 490 (1012)
+++. +++..+. |+.+.+|+... ..... .+..|...|..++|+|++. .+++++. |+.+++|+ ..+..+..+
T Consensus 120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (466)
T COG2319 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTL 194 (466)
T ss_pred CCcceEEeccCCCCccEEEEEecCCCeEEE---EEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEee
Confidence 8888 5555444 89999999987 44333 5778999999999999999 7788875 99999999 667888999
Q ss_pred cCCccCEEEEeccccCCce-EEEEEecCCeEEEEEcCCCCcee-eecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEE
Q 001790 491 EGHEAPVYSICPHHKENIQ-FIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1012)
Q Consensus 491 ~~h~~~v~~~~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~l 568 (1012)
.+|...|.+++|++ ++. .+++++.|+.|++||...+.... .+..+.... ...|++++..+++++ .++.+++
T Consensus 195 ~~~~~~v~~~~~~~--~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~d~~~~~ 267 (466)
T COG2319 195 AGHTDPVSSLAFSP--DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGS----SDGTIRL 267 (466)
T ss_pred ccCCCceEEEEEcC--CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEec----CCCcEEE
Confidence 99999999999984 444 55555999999999888666655 466666664 348999998888666 5999999
Q ss_pred EeCCCCee-eeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEE
Q 001790 569 WNESEGTI-KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (1012)
Q Consensus 569 wd~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~ 647 (1012)
|+...... ...+.+| ...+..+.|.|++..+++++.|+.+.+|+..............+...+..+.|.+++..++.+
T Consensus 268 ~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (466)
T COG2319 268 WDLRSSSSLLRTLSGH-SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSG 346 (466)
T ss_pred eeecCCCcEEEEEecC-CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEe
Confidence 99987664 4444455 347888999998889988888899999999888776666522233257888883332455555
Q ss_pred -ECCCcEEEEEccCC
Q 001790 648 -TADNGFKILANAIG 661 (1012)
Q Consensus 648 -~~dg~i~iwd~~~~ 661 (1012)
..|+.+.+|+....
T Consensus 347 ~~~d~~~~~~~~~~~ 361 (466)
T COG2319 347 GSDDGTIRLWDLRTG 361 (466)
T ss_pred ecCCCcEEeeecCCC
Confidence 56777777776543
No 159
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.84 E-value=5.8e-19 Score=169.35 Aligned_cols=287 Identities=14% Similarity=0.187 Sum_probs=210.0
Q ss_pred eEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEc-------cCCC
Q 001790 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS-------PDGN 419 (1012)
Q Consensus 347 V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-------pdg~ 419 (1012)
...+.|||||.. +.+-+.|..+.+|++...-.-....-. ...+.+..+---....|...+|- |+..
T Consensus 52 ~kgckWSPDGSc-iL~~sedn~l~~~nlP~dlys~~~~~~------~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~ 124 (406)
T KOG2919|consen 52 LKGCKWSPDGSC-ILSLSEDNCLNCWNLPFDLYSKKADGP------LNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN 124 (406)
T ss_pred hccceeCCCCce-EEeecccCeeeEEecChhhcccCCCCc------cccccceeEEeccCCEEEEEEeeeccccCCCccc
Confidence 456889999995 666688999999998532111000000 00000111111134577777775 6788
Q ss_pred EEEEEECCCeEEEEeecCCCcceeeeeeecccc---CeEEEEEeCCCCceEEEEEcCCCcEEEEe--CCCcceeee----
Q 001790 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVG---AVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNF---- 490 (1012)
Q Consensus 420 ~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~---~v~~l~~s~~~~~~~l~s~~~d~~v~vwd--~~~~~~~~~---- 490 (1012)
++|+.+.+.-|++||.-+|+....+..+ .|.. ...+++|+|||. .|++| ...+|+++| ..|+....+
T Consensus 125 l~a~ssr~~PIh~wdaftG~lraSy~~y-dh~de~taAhsL~Fs~DGe--qlfaG-ykrcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRASYRAY-DHQDEYTAAHSLQFSPDGE--QLFAG-YKRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred eeeeccccCceeeeeccccccccchhhh-hhHHhhhhheeEEecCCCC--eEeec-ccceEEEeeccCCCCCCcchhhhh
Confidence 9999999999999999999866543322 3444 346799999999 66655 478999999 555432211
Q ss_pred ---cCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEE
Q 001790 491 ---EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1012)
Q Consensus 491 ---~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 567 (1012)
.+..+-+.+++|+|. +...++.++...++-++.-...++...+.+|.+.|+.+.|.++|+.|++|+. .+..|.
T Consensus 201 ~~k~gq~giisc~a~sP~-~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaR---k~dkIl 276 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPM-DSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR---KDDKIL 276 (406)
T ss_pred cccccccceeeeeeccCC-CCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccccc---CCCeEE
Confidence 233567888999887 4468999999999999998888899999999999999999999999999986 688899
Q ss_pred EEeCCC-CeeeeeecCCCCCcceEE--EEecCCCEEEEEeCCCcEEEEeCCC-CeeEEEEecCCCCCCcceeEeecCCCE
Q 001790 568 EWNESE-GTIKRTYAGFRKKSNGVV--QFDTTQNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNL 643 (1012)
Q Consensus 568 lwd~~~-~~~~~~~~~~~~~~v~~~--~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~g~~ 643 (1012)
.||++. +.++..+..|....-..| ...|++++|++|+.||.|++||++. +..+..+.... ..++.++++|--.+
T Consensus 277 ~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~s--d~vNgvslnP~mpi 354 (406)
T KOG2919|consen 277 CWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYS--DTVNGVSLNPIMPI 354 (406)
T ss_pred EEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccc--ccccceecCcccce
Confidence 999986 456667766655333334 4568899999999999999999988 66566665443 37899999999888
Q ss_pred EEEEECC
Q 001790 644 LAVTTAD 650 (1012)
Q Consensus 644 l~~~~~d 650 (1012)
+|+++..
T Consensus 355 latssGq 361 (406)
T KOG2919|consen 355 LATSSGQ 361 (406)
T ss_pred eeeccCc
Confidence 8887654
No 160
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.84 E-value=9.4e-19 Score=168.14 Aligned_cols=405 Identities=12% Similarity=0.124 Sum_probs=249.5
Q ss_pred EEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeee
Q 001790 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF 490 (1012)
Q Consensus 412 v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~ 490 (1012)
++|||+|+++|+++.- .+.|-|..+-+.... -.--..|..+.|..|.-. .+.....|+.|.+|+ ...+-...+
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~ql----f~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ckI 87 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQL----FLCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCKI 87 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHH----HHHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEEe
Confidence 6899999999999766 677888877543331 122456888999988875 566778899999999 777777788
Q ss_pred cCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEe
Q 001790 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (1012)
Q Consensus 491 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd 570 (1012)
....+++.+++|+|++. .+|.+...+-.|.+|.+.+..... +......+..++|+|||++.+.++.. |-...+.+..
T Consensus 88 deg~agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRr-DCkdyv~i~~ 164 (447)
T KOG4497|consen 88 DEGQAGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRR-DCKDYVQISS 164 (447)
T ss_pred ccCCCcceeeeECCCcc-eEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecc-cHHHHHHHHh
Confidence 88888999999987432 677788889999999998865543 33344457899999999999988741 1112222332
Q ss_pred CCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeC--CCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEE
Q 001790 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE--DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1012)
Q Consensus 571 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~ 648 (1012)
-.....++.+...+. ..+.+.|+|||+.+++-.. +-.|+.|... -.+..++|+|.++++++|+
T Consensus 165 c~~W~ll~~f~~dT~-DltgieWsPdg~~laVwd~~Leykv~aYe~~--------------lG~k~v~wsP~~qflavGs 229 (447)
T KOG4497|consen 165 CKAWILLKEFKLDTI-DLTGIEWSPDGNWLAVWDNVLEYKVYAYERG--------------LGLKFVEWSPCNQFLAVGS 229 (447)
T ss_pred hHHHHHHHhcCCCcc-cccCceECCCCcEEEEecchhhheeeeeeec--------------cceeEEEeccccceEEeec
Confidence 333445555555544 5677999999988776432 2222222211 1468899999999999999
Q ss_pred CCCcEEEEEccCCceeeecccCCccccccCccceeeeccccccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCC
Q 001790 649 ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKP 728 (1012)
Q Consensus 649 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1012)
.|+.+|+.+--+- .+-|+++-...-.+.+.............+......+.|
T Consensus 230 yD~~lrvlnh~tW------------------------k~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p---- 281 (447)
T KOG4497|consen 230 YDQMLRVLNHFTW------------------------KPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTP---- 281 (447)
T ss_pred cchhhhhhceeee------------------------eehhhhccchhccCchhhhhhhhhcchhhhcccccccCC----
Confidence 9999998654321 111111100000000000000000000000000000000
Q ss_pred cccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeeccCeeEeeeccccccCCCCCccccc
Q 001790 729 RTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASA 808 (1012)
Q Consensus 729 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~ 808 (1012)
.+-...+|...+ .+..+...| +.+-.+
T Consensus 282 -----~~~~a~~~~~se--------------------~~YE~~~~p-------------v~~~~l--------------- 308 (447)
T KOG4497|consen 282 -----TDLEAHIWEESE--------------------TIYEQQMTP-------------VKVHKL--------------- 308 (447)
T ss_pred -----CccccCccccch--------------------hhhhhhhcc-------------eeeecc---------------
Confidence 001111111110 000000000 000000
Q ss_pred cceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEEEcC---CcEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCC
Q 001790 809 VPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG---GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDN 885 (1012)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~sd---g~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~ 885 (1012)
.+. ...+. ..-.+..++||+|..++|+-.| +.+-+||+...++...+. ...+|....|.| +.
T Consensus 309 -----kp~------tD~pn--Pk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~ 373 (447)
T KOG4497|consen 309 -----KPP------TDFPN--PKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GR 373 (447)
T ss_pred -----cCC------CCCCC--cccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CC
Confidence 000 01111 4556778999999999999986 559999998777655443 566899999999 77
Q ss_pred cEEEEEeCCCeEEEEEccCCeEeEEecccCCCeEEEEEcCCCCEEEEEeCCC
Q 001790 886 NIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADA 937 (1012)
Q Consensus 886 ~~las~~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg 937 (1012)
..|+.+.....+++|......++..- +..-.|..+.|.-+|..++..+.|.
T Consensus 374 prL~vctg~srLY~W~psg~~~V~vP-~~GF~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 374 PRLVVCTGKSRLYFWAPSGPRVVGVP-KKGFNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred ceEEEEcCCceEEEEcCCCceEEecC-CCCceeeeEEecCCCcEEEEEcCCc
Confidence 77787877778999997765555543 3346799999999999999999886
No 161
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=2.6e-19 Score=181.03 Aligned_cols=212 Identities=18% Similarity=0.312 Sum_probs=167.9
Q ss_pred EEEEecCcceEEEeeccCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEE
Q 001790 769 RLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMS 848 (1012)
Q Consensus 769 ~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 848 (1012)
|++......+++++|..+.|++||+.. +++.+.+++ |...|+++.+.-...+||+
T Consensus 84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-----------------------kl~hr~lkd--h~stvt~v~YN~~DeyiAs 138 (673)
T KOG4378|consen 84 CVACASQSLYEISGGQSGCVKIWDLRA-----------------------KLIHRFLKD--HQSTVTYVDYNNTDEYIAS 138 (673)
T ss_pred HHhhhhcceeeeccCcCceeeehhhHH-----------------------HHHhhhccC--CcceeEEEEecCCcceeEE
Confidence 344444457899999999999998642 233344666 9999999999999999999
Q ss_pred Ec-CCcEEEEEcCCCeEEEEEcCCCC-CeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeEEe-cccCCCeEEEEEcC
Q 001790 849 AT-GGKISLFNMMTFKVMTTFMSPPP-ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL-KGHQKRITGLAFST 925 (1012)
Q Consensus 849 ~s-dg~i~lwd~~~~~~~~~~~~~~~-~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~~-~~h~~~V~~l~~sp 925 (1012)
++ .|.|.|..+.++....+|....+ .|.-+.|+|....+|.+++++|.|.+||+....++..+ +.|..+...|+|+|
T Consensus 139 vs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfsp 218 (673)
T KOG4378|consen 139 VSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSP 218 (673)
T ss_pred eccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecC
Confidence 99 68899999999888777775544 45689999966667888999999999999987766554 67999999999998
Q ss_pred CC-CEEEEEeCCCcEEEEeCCCCCccccEEEecCCCCCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCce-EEEeec-
Q 001790 926 SL-NILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKME-RIRQVG- 1001 (1012)
Q Consensus 926 dg-~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~-~d~~i~vwd~~~~~-~~~~~~- 1001 (1012)
.. .+|++.|.|+.|.+||+...+....+... .+.+.++|+++|.+|++| +.|.|..||+...+ .+....
T Consensus 219 sne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~-------~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sa 291 (673)
T KOG4378|consen 219 SNEALLVSVGYDKKINIYDIRSQASTDRLTYS-------HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSA 291 (673)
T ss_pred CccceEEEecccceEEEeecccccccceeeec-------CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeee
Confidence 65 67889999999999999976544333222 567899999999999999 78999999998644 333333
Q ss_pred -CCCeeEEEecC
Q 001790 1002 -SPHICSIIFCN 1012 (1012)
Q Consensus 1002 -~~~i~~~~f~p 1012 (1012)
...|.+++|-|
T Consensus 292 h~~sVt~vafq~ 303 (673)
T KOG4378|consen 292 HDASVTRVAFQP 303 (673)
T ss_pred cccceeEEEeee
Confidence 25699999854
No 162
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=4e-19 Score=171.05 Aligned_cols=289 Identities=16% Similarity=0.248 Sum_probs=210.1
Q ss_pred CCCceEEEEEec----CCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC-
Q 001790 343 QGSTVISMDFHP----SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD- 417 (1012)
Q Consensus 343 h~~~V~~~~~sp----dg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd- 417 (1012)
|+.+|..++|.+ +...++|+.+ ...+.||+......+.. ++...-..|......++|+-|
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~--------------lq~y~D~d~~Esfytcsw~yd~ 101 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRL--------------LQSYADEDHDESFYTCSWSYDS 101 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceee--------------eeeccCCCCCcceEEEEEEecC
Confidence 778999999984 3344677765 56888998764331110 111112247888889999874
Q ss_pred ---CCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeee---
Q 001790 418 ---GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF--- 490 (1012)
Q Consensus 418 ---g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~--- 490 (1012)
..++|.|+.-|.|+|.|+.++++.. .+.+|...|+.+.|.|+..+ +++++|.|.+|++|+ .++.++..|
T Consensus 102 ~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~VfGG~ 177 (385)
T KOG1034|consen 102 NTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVAVFGGV 177 (385)
T ss_pred CCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEEEeccc
Confidence 3479999999999999999988777 68899999999999999877 899999999999999 888888776
Q ss_pred cCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCcee----------------------------eecCCCCcEE
Q 001790 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----------------------------DYDAPGHWCT 542 (1012)
Q Consensus 491 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~----------------------------~~~~~~~~v~ 542 (1012)
.||.+.|.++.|+. +|.++++++.|.++++|++...+... +...|...|.
T Consensus 178 egHrdeVLSvD~~~--~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD 255 (385)
T KOG1034|consen 178 EGHRDEVLSVDFSL--DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD 255 (385)
T ss_pred ccccCcEEEEEEcC--CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence 57999999999976 55799999999999999997422110 0011222333
Q ss_pred EEEEccCCCeEEEeeecCCCCCcEEEEeCC-CCee-------------eeeecCCCCCcceEE--EEecCCCEEEEEeCC
Q 001790 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNES-EGTI-------------KRTYAGFRKKSNGVV--QFDTTQNHFLAVGED 606 (1012)
Q Consensus 543 ~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~-~~~~-------------~~~~~~~~~~~v~~~--~~s~~~~~l~~~~~d 606 (1012)
|+.|- |+++++-+ .++.|..|... -++. ...+.-... .+.-+ +|.|-+++|+.|...
T Consensus 256 Cvrw~--gd~ilSks----cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c-~iWfirf~~d~~~~~la~gnq~ 328 (385)
T KOG1034|consen 256 CVRWF--GDFILSKS----CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMC-DIWFIRFAFDPWQKMLALGNQS 328 (385)
T ss_pred HHHHH--hhheeecc----cCceEEEEecchhhhhhhccCCCccceeeeeEeccCcc-ceEEEEEeecHHHHHHhhccCC
Confidence 33332 56777766 47789999762 1111 122222221 34444 456667899999999
Q ss_pred CcEEEEeCCCCeeE--EEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEcc
Q 001790 607 SQIKFWDMDNVNIL--TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1012)
Q Consensus 607 g~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~ 659 (1012)
|.|++||++..+.. .++........|...+|+.||..|+...+|++|.-||..
T Consensus 329 g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 329 GKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 99999999886652 333333445579999999999999999999999999853
No 163
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.83 E-value=3.7e-19 Score=174.30 Aligned_cols=264 Identities=16% Similarity=0.209 Sum_probs=188.8
Q ss_pred CCccceEeecCCCceEEEEEecCC-CcEEEEecCCCeEEEEEccCCceec-ccccccccccccCccccceeccCCCcceE
Q 001790 333 LPRTVAVSLHQGSTVISMDFHPSH-QTLLLVGSSNGEITLWELAMRDRLV-SKPFKIWDMAACSLPFQASIFKDVPISVS 410 (1012)
Q Consensus 333 ~~~~~~~~~~h~~~V~~~~~spdg-~~llasg~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 410 (1012)
.|......++|.+.|+.+.-++-| ..+.|+=+..|.|.||++...-... ...+.+-+ ....+...+.+|...=+
T Consensus 140 ~P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy 215 (440)
T KOG0302|consen 140 KPQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGY 215 (440)
T ss_pred cccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCccce
Confidence 456666777899999999988875 3366777889999999985421111 00000000 11112345788999999
Q ss_pred EEEEcc-CCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCc--c
Q 001790 411 RVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR--K 486 (1012)
Q Consensus 411 ~v~~sp-dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~--~ 486 (1012)
.++||| .-..|++|..-+.|++|...+|.-..-...+.+|+..|..++|||..+. .|+|||-||+|+||| ..+. .
T Consensus 216 ~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~ 294 (440)
T KOG0302|consen 216 GLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKA 294 (440)
T ss_pred eeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccc
Confidence 999999 3334678887888999999987654444457789999999999998877 899999999999999 6652 2
Q ss_pred eeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCC---CceeeecCCCCcEEEEEEccCCCe-EEEeeecCCC
Q 001790 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM---GSRVDYDAPGHWCTTMLYSADGSR-LFSCGTSKDG 562 (1012)
Q Consensus 487 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~~~~~ 562 (1012)
....+.|.+.|+.+.|+... .+|++|+.||+++|||++.. .++..++.|..+|+++.|+|.... +++++ .
T Consensus 295 ~~~~kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg----~ 368 (440)
T KOG0302|consen 295 AVSTKAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG----E 368 (440)
T ss_pred eeEeeccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc----C
Confidence 23348899999999997654 49999999999999999864 455688899999999999996554 44444 5
Q ss_pred CCcEEEEeCCCCee----------------eeeecCC-CCCcceEEEEecCC-CEEEEEeCCC
Q 001790 563 DSFLVEWNESEGTI----------------KRTYAGF-RKKSNGVVQFDTTQ-NHFLAVGEDS 607 (1012)
Q Consensus 563 ~~~i~lwd~~~~~~----------------~~~~~~~-~~~~v~~~~~s~~~-~~l~~~~~dg 607 (1012)
|.+|.+||+..-.- .+.+..| .+..+..+.|++.- .++++.+.||
T Consensus 369 D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 369 DNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred CCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence 99999999853211 0111112 22246667787754 4566666665
No 164
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.83 E-value=3.7e-18 Score=174.40 Aligned_cols=232 Identities=14% Similarity=0.122 Sum_probs=170.2
Q ss_pred CCcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEE------eCCCCceEEEEEcCCCcEE
Q 001790 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAF------AYPNKLLCVVTCGDDKLIK 478 (1012)
Q Consensus 405 h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~------s~~~~~~~l~s~~~d~~v~ 478 (1012)
|...|.|+.|+.+...+.+++.+..+.-||+.+.. ... +.-....|....+ -..+..-.|+.++.||.+.
T Consensus 13 ~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s-~~~---~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~ 88 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDS-VEV---AKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFV 88 (737)
T ss_pred cceeEEeecccccceEEEeccCceEEEeecccchh-hhh---hhCCcccCCccccccccccCCCCCcceEEEEcCCceEE
Confidence 67778899999888777666555544445554322 211 1111111111111 1111122688888999999
Q ss_pred EEeCCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeee
Q 001790 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1012)
Q Consensus 479 vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 558 (1012)
+.+..|+....+..|.+.+.+-.|++ +|.-|+++++||.|++|. +++-.+.++.....+|.|++|.|+.+.++.|.
T Consensus 89 il~k~~rVE~sv~AH~~A~~~gRW~~--dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~- 164 (737)
T KOG1524|consen 89 ILNKSARVERSISAHAAAISSGRWSP--DGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ- 164 (737)
T ss_pred EecccchhhhhhhhhhhhhhhcccCC--CCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEec-
Confidence 99999999999999999999999977 556799999999999997 44455555666777999999999999888885
Q ss_pred cCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEee
Q 001790 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1012)
Q Consensus 559 ~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1012)
.+.+.+=.+.....+.....|.+ .|.++.|++..+.+++||+|-..++||... ..+..-..+. .+|++++|+
T Consensus 165 ----g~h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~S~~~e--y~ITSva~n 236 (737)
T KOG1524|consen 165 ----GGHISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFTSAAEE--YAITSVAFN 236 (737)
T ss_pred ----CCeEEEeecccccceeEEeccCc-EEEEeecCccccceeecCCceeEEeecccC-cccccCChhc--cceeeeeec
Confidence 67788877777777778888877 899999999999999999999999999754 4444444333 489999999
Q ss_pred cCCCEEEEEECCCcEE
Q 001790 639 KEGNLLAVTTADNGFK 654 (1012)
Q Consensus 639 ~~g~~l~~~~~dg~i~ 654 (1012)
|+ +.+++++.. +.|
T Consensus 237 pd-~~~~v~S~n-t~R 250 (737)
T KOG1524|consen 237 PE-KDYLLWSYN-TAR 250 (737)
T ss_pred cc-cceeeeeee-eee
Confidence 99 677777653 444
No 165
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.83 E-value=1.1e-18 Score=175.60 Aligned_cols=305 Identities=12% Similarity=0.085 Sum_probs=218.5
Q ss_pred eeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCC----ceeeecCCCCcEEEEEEccCC-CeEEEeeecCC
Q 001790 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG----SRVDYDAPGHWCTTMLYSADG-SRLFSCGTSKD 561 (1012)
Q Consensus 487 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~ 561 (1012)
....+-+..+|.+++|+|..+-+++++|..-|.|-+||+.+.+ ....+..|..+|.++.|+|.. ..+++.+.
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy--- 255 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSY--- 255 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeecc---
Confidence 3445568889999999999988899999999999999996332 345677889999999999954 45666664
Q ss_pred CCCcEEEEeCCCCeeeeeecCCC-CCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCee-EEEEecCCCCCCcceeEeec
Q 001790 562 GDSFLVEWNESEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI-LTSTDAEGGLPNLPRLRFSK 639 (1012)
Q Consensus 562 ~~~~i~lwd~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s~ 639 (1012)
||+|++-|++.+.....+.... ...+..+.|+.+...++.+..=|.+.+||++++.. ...+..+.. .|..++++|
T Consensus 256 -DGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k--KI~sv~~NP 332 (498)
T KOG4328|consen 256 -DGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK--KITSVALNP 332 (498)
T ss_pred -CceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc--ccceeecCC
Confidence 9999999998876544444322 22466688888888889988888999999987654 444444433 799999999
Q ss_pred -CCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeeccccccccccCCCCCccccccCCCCCCccccCC
Q 001790 640 -EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGV 718 (1012)
Q Consensus 640 -~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1012)
...++|+++.|++.+|||++.-..... |
T Consensus 333 ~~p~~laT~s~D~T~kIWD~R~l~~K~s--------------------p------------------------------- 361 (498)
T KOG4328|consen 333 VCPWFLATASLDQTAKIWDLRQLRGKAS--------------------P------------------------------- 361 (498)
T ss_pred CCchheeecccCcceeeeehhhhcCCCC--------------------c-------------------------------
Confidence 567899999999999999865311000 0
Q ss_pred CCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeeccCeeEeeecccccc
Q 001790 719 DPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQ 798 (1012)
Q Consensus 719 ~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~ 798 (1012)
.+.. ..|...|.+..|||.+..|++.+.|..|+|||..-
T Consensus 362 --------------------~lst------------------~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~--- 400 (498)
T KOG4328|consen 362 --------------------FLST------------------LPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSC--- 400 (498)
T ss_pred --------------------ceec------------------ccccceeeeeEEcCCCCceEeeccCCceEEeeccc---
Confidence 0001 11888999999999998999999999999998531
Q ss_pred CCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEEEc-CCcEEEEEcCCCeEEEEEcCCCC-Cee
Q 001790 799 NPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPP-AST 876 (1012)
Q Consensus 799 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~-~i~ 876 (1012)
+.-|+...+.+......+ .--..-..+|.||..++++|. -..|-++|-..++.+..+..... .|.
T Consensus 401 -----------~sa~~~p~~~I~Hn~~t~--RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~ 467 (498)
T KOG4328|consen 401 -----------ISAKDEPLGTIPHNNRTG--RWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIP 467 (498)
T ss_pred -----------ccccCCccceeeccCccc--ccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccc
Confidence 111222222222211111 011123457999999999998 67899999998888887755443 455
Q ss_pred EE-EEecCCCc-EEEEEeCCCeEEEEEcc
Q 001790 877 FL-AFHPQDNN-IIAIGTEDSTIHIYNVR 903 (1012)
Q Consensus 877 ~l-~~sp~d~~-~las~~~dg~v~iwd~~ 903 (1012)
++ .|+| -+. ++|-++..|.|+||.-+
T Consensus 468 ~vn~~HP-~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 468 SVNEFHP-MRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cceeecc-cccceeccCCccceEEEEecC
Confidence 44 7999 555 66666677899988644
No 166
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=8.5e-19 Score=177.30 Aligned_cols=289 Identities=13% Similarity=0.142 Sum_probs=213.3
Q ss_pred CCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCC-EEEEEECCCeEEEEeecCC--Ccce
Q 001790 366 NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGS--NDLR 442 (1012)
Q Consensus 366 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~las~~~d~~v~vwd~~~~--~~~~ 442 (1012)
...++|||+...+..... . -....-.+.++.|+.... .+|+.+.|..+++|.-... +..+
T Consensus 11 gd~~kl~D~s~~~~~~~~--------------~---~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~ 73 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEY--------------V---HQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPR 73 (673)
T ss_pred CCceEEeecccccCcccc--------------c---cCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccce
Confidence 347999998765432210 0 011122489999998664 2334456778999965432 1111
Q ss_pred eeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEE
Q 001790 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIK 521 (1012)
Q Consensus 443 ~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 521 (1012)
. ..+.+. .-.|++...... ++++|+..++|+||| ....+.+.+++|...|+++.++. ...+|++++..|.|.
T Consensus 74 ~-~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~--~DeyiAsvs~gGdii 146 (673)
T KOG4378|consen 74 V-RKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN--TDEYIASVSDGGDII 146 (673)
T ss_pred e-eccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC--CcceeEEeccCCcEE
Confidence 1 112222 223333333334 899999999999999 65556678899999999999865 347999999999999
Q ss_pred EEEcCCCCceeeecCC-CCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCC-CE
Q 001790 522 AWLYDTMGSRVDYDAP-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ-NH 599 (1012)
Q Consensus 522 ~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~ 599 (1012)
+..+.++.....+... +..|.-+.|++..+.+++... .+|.|.+||+....++..+...+..+...++|+|.. ..
T Consensus 147 ih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~as---d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l 223 (673)
T KOG4378|consen 147 IHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIAS---DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEAL 223 (673)
T ss_pred EEecccCccccceecCCCCeEEEeecccccceeeEeec---cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccce
Confidence 9999988877777766 446679999999988776654 589999999998888887776666688889999965 56
Q ss_pred EEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCc
Q 001790 600 FLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTP 679 (1012)
Q Consensus 600 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 679 (1012)
|++.|.|..|.+||....+....+.... +...++|+++|.+|+.|+..|.|..||++..+........ +...
T Consensus 224 ~vsVG~Dkki~~yD~~s~~s~~~l~y~~---Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sa-----h~~s 295 (673)
T KOG4378|consen 224 LVSVGYDKKINIYDIRSQASTDRLTYSH---PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSA-----HDAS 295 (673)
T ss_pred EEEecccceEEEeecccccccceeeecC---CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeee-----cccc
Confidence 6778999999999999887777776533 7899999999999999999999999999877655554443 4455
Q ss_pred cceeeecccc
Q 001790 680 IESVALKVSA 689 (1012)
Q Consensus 680 v~~v~~s~~g 689 (1012)
|++++|-+..
T Consensus 296 Vt~vafq~s~ 305 (673)
T KOG4378|consen 296 VTRVAFQPSP 305 (673)
T ss_pred eeEEEeeecc
Confidence 8999998765
No 167
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=8.9e-18 Score=179.06 Aligned_cols=592 Identities=12% Similarity=0.125 Sum_probs=345.0
Q ss_pred CCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC-----
Q 001790 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD----- 417 (1012)
Q Consensus 343 h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd----- 417 (1012)
|...-.++.|+|.| ++|-|+ ...|.+-|..+-+.+.+ +.-|...|+.+.|.|-
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygs-hslV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~ 71 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGS-HSLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRD 71 (1062)
T ss_pred CcccccccccCccc--eEEEec-CceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchh
Confidence 45567889999999 688887 56888889888776643 5568999999999872
Q ss_pred -------CCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCC---CCceEEEEEcCCCcEEEEe-CCCcc
Q 001790 418 -------GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP---NKLLCVVTCGDDKLIKVWE-LSGRK 486 (1012)
Q Consensus 418 -------g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~---~~~~~l~s~~~d~~v~vwd-~~~~~ 486 (1012)
.-+||++...|.|.+||...+..+. .+..|..++..++|-+. .+. +++.-....++.+|+ .+|+.
T Consensus 72 llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 72 LLSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred ccCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCce
Confidence 2367788888999999999887655 47789999999998763 333 566666678999999 99999
Q ss_pred eeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCC------CceeeecC-CCC--------------------
Q 001790 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM------GSRVDYDA-PGH-------------------- 539 (1012)
Q Consensus 487 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~------~~~~~~~~-~~~-------------------- 539 (1012)
............|+.+.|-.. ..+..-+..|.+.+.+.-.. .....+.. |..
T Consensus 148 ~Wk~~ys~~iLs~f~~DPfd~-rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~s 226 (1062)
T KOG1912|consen 148 FWKYDYSHEILSCFRVDPFDS-RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPAS 226 (1062)
T ss_pred eeccccCCcceeeeeeCCCCc-ceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcc
Confidence 888776666777788777644 34444445566655543211 11111111 000
Q ss_pred -----cEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCC--CEEEEEeCCCcEEEE
Q 001790 540 -----WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ--NHFLAVGEDSQIKFW 612 (1012)
Q Consensus 540 -----~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iw 612 (1012)
....++|+|.-+.++.... ...+.++|++-..++....-..+ .+..+.+-|++ ..+++.-.||.+.+|
T Consensus 227 a~fity~a~faf~p~~rn~lfi~~----prellv~dle~~~~l~vvpier~-~akfv~vlP~~~rd~LfclH~nG~ltir 301 (1062)
T KOG1912|consen 227 AYFITYCAQFAFSPHWRNILFITF----PRELLVFDLEYECCLAVVPIERG-GAKFVDVLPDPRRDALFCLHSNGRLTIR 301 (1062)
T ss_pred hhHHHHHHhhhcChhhhceEEEEe----ccceEEEcchhhceeEEEEeccC-CcceeEeccCCCcceEEEEecCCeEEEE
Confidence 0123566776665554443 67799999998888877765554 55667777765 568889999999999
Q ss_pred eCCCCe----------------eEEEEecCCCCCCcceeEeecC-CCEEEEEECCCcEEEEEccCCceeeecccCCcc--
Q 001790 613 DMDNVN----------------ILTSTDAEGGLPNLPRLRFSKE-GNLLAVTTADNGFKILANAIGLRSLRAVENPPF-- 673 (1012)
Q Consensus 613 d~~~~~----------------~~~~~~~~~~~~~v~~v~~s~~-g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-- 673 (1012)
-.+... ....+...... .+...+..|. ...+++--.+|.+.+|.+.++........+...
T Consensus 302 vrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~-rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~ 380 (1062)
T KOG1912|consen 302 VRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEF-RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELV 380 (1062)
T ss_pred EeeccCccccccchhhccccccceEEEeechhc-ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccc
Confidence 765521 11111111111 1222233343 455666667888899998865221111110000
Q ss_pred --------ccccCccceeeeccccccccccCCCCCccccccCCCCCCccccCCCCCCCCCC--CCcccccccCCCCCcce
Q 001790 674 --------EALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMD--KPRTVDDVTDKPKPWQL 743 (1012)
Q Consensus 674 --------~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~d~~i~~w~~ 743 (1012)
...-+...-+.++-||.. +......+..+.............-.+.+ -.++.|...|+|.++|+
T Consensus 381 ~pf~f~~~~~~v~k~~l~~LS~dg~h------~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdv 454 (1062)
T KOG1912|consen 381 LPFDFNLSTKLVGKTSLISLSDDGSH------SSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDV 454 (1062)
T ss_pred ccccccCceeehhhccccchhhcCCC------CCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEe
Confidence 000000111122222210 00111111122211111111111111111 24678888999999998
Q ss_pred eEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeeccCeeEeeeccccccCCCCCccccccceeeccCCCceeee
Q 001790 744 AEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAN 823 (1012)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 823 (1012)
.+........ .|.+.|.++.|....+.+-.+.+. . .+........+.+-++.+|.-...
T Consensus 455 st~~v~~~fs--------vht~~VkgleW~g~sslvSfsys~-~------------n~~sg~vrN~l~vtdLrtGlsk~f 513 (1062)
T KOG1912|consen 455 STNAVAASFS--------VHTSLVKGLEWLGNSSLVSFSYSH-V------------NSASGGVRNDLVVTDLRTGLSKRF 513 (1062)
T ss_pred cchhhhhhhc--------ccccceeeeeeccceeEEEeeecc-c------------cccccceeeeEEEEEccccccccc
Confidence 7644332222 288899999998877644433321 0 000011112345567777764432
Q ss_pred cccCCCCCCCEeEEEEeeCCCEEEEEc-CCcEEEEEcCCCeEEEEEcCCCCCeeEEEEe-cC---------------CCc
Q 001790 824 DVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFH-PQ---------------DNN 886 (1012)
Q Consensus 824 ~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~i~~l~~s-p~---------------d~~ 886 (1012)
.-...+...+|+.+..|.-|+||+..- +.-+.+||+++..+++.....-..|+.++|+ |. ..+
T Consensus 514 R~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~n 593 (1062)
T KOG1912|consen 514 RGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMSEN 593 (1062)
T ss_pred ccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhhhc
Confidence 211124678999999999999999998 7889999998877665554444458889998 30 112
Q ss_pred EEEEEeCCCeEEEEEcc-------CCeEeE-EecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCccccEEEecC
Q 001790 887 IIAIGTEDSTIHIYNVR-------VDEVKS-KLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIP 958 (1012)
Q Consensus 887 ~las~~~dg~v~iwd~~-------~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~ 958 (1012)
..+..+.| .+++.+. ++.... ..+...-.+..++|- +..|+.|..+|.+.+||+....-... ...+
T Consensus 594 ~vv~ds~e--s~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAwk--~d~lv~GD~~GNl~~WDlg~R~SRg~--~d~p 667 (1062)
T KOG1912|consen 594 LVVLDSVE--SRIYHITLSALVVSDGSQVNTAWESFAFALCAMAWK--DDILVVGDVEGNLVVWDLGRRQSRGV--RDSP 667 (1062)
T ss_pred eeeecccc--chheehhhhhhhhccccchhhHHHHHHHHHHhhhcc--CCeeEeecccCceeEEecccccccCc--cCCC
Confidence 33333322 2333321 111111 111111123346664 66899999999999999865432110 1111
Q ss_pred CCCCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEeecC
Q 001790 959 AGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQVGS 1002 (1012)
Q Consensus 959 ~~~~~~~v~~l~fs~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~ 1002 (1012)
. +...+....+.|....+++-....+-+||.+....+..+.+
T Consensus 668 ~--~ra~~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~siag 709 (1062)
T KOG1912|consen 668 D--PRAHSLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSIAG 709 (1062)
T ss_pred C--chhhheecccCCCCceEEEEecCcceecccccceeeeeecc
Confidence 1 11233444455654455555666788999888888888743
No 168
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.82 E-value=1.9e-18 Score=166.43 Aligned_cols=251 Identities=18% Similarity=0.238 Sum_probs=185.1
Q ss_pred eeccCCCcceEEEEEcc-----CCCEEEEEECCCeEEEEeecCCCcceeeeee--eccccCeEEEEEeCCCC--ceEEEE
Q 001790 400 SIFKDVPISVSRVAWSP-----DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI--DAHVGAVNDLAFAYPNK--LLCVVT 470 (1012)
Q Consensus 400 ~~~~~h~~~V~~v~~sp-----dg~~las~~~d~~v~vwd~~~~~~~~~~~~l--~~h~~~v~~l~~s~~~~--~~~l~s 470 (1012)
++..+|..+|..++|++ .-..+|+.+.+ .+.+|.......++..+.+ ..|......++|+-|.. +.++|.
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 45677999999999985 23456666544 5888988765433333232 24778889999987643 348899
Q ss_pred EcCCCcEEEEe-CCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeec---CCCCcEEEEEE
Q 001790 471 CGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---APGHWCTTMLY 546 (1012)
Q Consensus 471 ~~~d~~v~vwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~---~~~~~v~~~~~ 546 (1012)
|+.-|.|+|.| .+++....+.+|...|+.+.++|.. .+++++++.|..|++|++++..++..+. +|.+.|.++.|
T Consensus 111 ~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~-~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDR-PQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred ecceeEEEEEecchhhhccceeccCccchhhhcCCCC-CcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 99999999999 9999999999999999999999874 4799999999999999999999988764 57779999999
Q ss_pred ccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeec----------------------------CCCCCcceEEEEecCCC
Q 001790 547 SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA----------------------------GFRKKSNGVVQFDTTQN 598 (1012)
Q Consensus 547 s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~----------------------------~~~~~~v~~~~~s~~~~ 598 (1012)
+++|.++++++. |.+|.+|++...+....+. .|.. .|.|+.|- |+
T Consensus 190 ~~~gd~i~ScGm----Dhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrn-yVDCvrw~--gd 262 (385)
T KOG1034|consen 190 SLDGDRIASCGM----DHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRN-YVDCVRWF--GD 262 (385)
T ss_pred cCCCCeeeccCC----cceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccc-hHHHHHHH--hh
Confidence 999999999995 9999999998432211111 1111 23333333 57
Q ss_pred EEEEEeCCCcEEEEeCC-CCee-------------EEEEecCCCCCCccee--EeecCCCEEEEEECCCcEEEEEccCC
Q 001790 599 HFLAVGEDSQIKFWDMD-NVNI-------------LTSTDAEGGLPNLPRL--RFSKEGNLLAVTTADNGFKILANAIG 661 (1012)
Q Consensus 599 ~l~~~~~dg~i~iwd~~-~~~~-------------~~~~~~~~~~~~v~~v--~~s~~g~~l~~~~~dg~i~iwd~~~~ 661 (1012)
++++-+-++.|..|... -++. +..+..+.. .++-+ +|.|-++.||.|...|.+.+||+.+.
T Consensus 263 ~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c--~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ 339 (385)
T KOG1034|consen 263 FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMC--DIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNN 339 (385)
T ss_pred heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCcc--ceEEEEEeecHHHHHHhhccCCCcEEEEECCCC
Confidence 88888888999999872 1221 222222222 34444 45667889999999999999998765
No 169
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=7.7e-19 Score=176.15 Aligned_cols=263 Identities=11% Similarity=0.147 Sum_probs=187.0
Q ss_pred CceEEEEEecC-------CCcEEEEecCCCeEEEEEccCCceecccccccccccccCcc------ccceeccCCCcceEE
Q 001790 345 STVISMDFHPS-------HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLP------FQASIFKDVPISVSR 411 (1012)
Q Consensus 345 ~~V~~~~~spd-------g~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~h~~~V~~ 411 (1012)
....|++|... |+ |+|.|+.|..|.|||+.--..+. ..+-++..... .......+|+..|.+
T Consensus 174 afPLC~ewld~~~~~~~~gN-yvAiGtmdp~IeIWDLDI~d~v~----P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~ 248 (463)
T KOG0270|consen 174 AFPLCIEWLDHGSKSGGAGN-YVAIGTMDPEIEIWDLDIVDAVL----PCVTLGSKASKKKKKKGKRSNSASGHTDAVLA 248 (463)
T ss_pred CcchhhhhhhcCCCCCCCcc-eEEEeccCceeEEeccccccccc----cceeechhhhhhhhhhcccccccccchHHHHH
Confidence 34456666432 56 89999999999999986322211 00001000000 011234579999999
Q ss_pred EEEccC-CCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceee
Q 001790 412 VAWSPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (1012)
Q Consensus 412 v~~spd-g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~ 489 (1012)
++|+.+ ...||+||.|.+|++||+.+|++.. ++..|.+.|.++.|+|.... ++++|+.|++|.+.| ........
T Consensus 249 Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~ 324 (463)
T KOG0270|consen 249 LSWNRNFRNVLASGSADKTVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGK 324 (463)
T ss_pred HHhccccceeEEecCCCceEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCc
Confidence 999984 4688999999999999999999877 57789999999999998766 899999999999999 53222222
Q ss_pred ecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCC-CceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEE
Q 001790 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1012)
Q Consensus 490 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~l 568 (1012)
.-...+.|-.++|.+... ..++++..||+++-+|++.. ++.+++..|.++|.++++++.-..+++.+. .++.|.+
T Consensus 325 ~wk~~g~VEkv~w~~~se-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s---~d~~Vkl 400 (463)
T KOG0270|consen 325 EWKFDGEVEKVAWDPHSE-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS---TDKVVKL 400 (463)
T ss_pred eEEeccceEEEEecCCCc-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc---ccceEEE
Confidence 222456788899987654 57888899999999999987 678899999999999999987665444432 5999999
Q ss_pred EeCCCCeeeeeecCC-CCCcceEEEEecCCC-EEEEEeCCCcEEEEeCCCCeeE
Q 001790 569 WNESEGTIKRTYAGF-RKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNVNIL 620 (1012)
Q Consensus 569 wd~~~~~~~~~~~~~-~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~ 620 (1012)
|++............ .-+...|.++.|+-. +++.|+..+.+++||+.+...+
T Consensus 401 w~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 401 WKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred EeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 998654332111110 011355667777665 4566778888999999876543
No 170
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.81 E-value=2.2e-18 Score=168.91 Aligned_cols=247 Identities=19% Similarity=0.230 Sum_probs=189.9
Q ss_pred ccCCCcceEEEEEccCC--CEEEEEECCCeEEEEeecCC-------------CcceeeeeeeccccCeEEEEEeCCCCce
Q 001790 402 FKDVPISVSRVAWSPDG--NYVGVAFTKHLIQLYSYAGS-------------NDLRQHSQIDAHVGAVNDLAFAYPNKLL 466 (1012)
Q Consensus 402 ~~~h~~~V~~v~~spdg--~~las~~~d~~v~vwd~~~~-------------~~~~~~~~l~~h~~~v~~l~~s~~~~~~ 466 (1012)
...|.+.+..+.-++-| .+.|+=+..|.|.||++... ...+.++++.+|.+.=+.++|||-...
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g- 225 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG- 225 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc-
Confidence 45577788888777744 55666678899999998531 123455678899999999999994332
Q ss_pred EEEEEcCCCcEEEEe-CCCcce---eeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCc--eeeecCCCCc
Q 001790 467 CVVTCGDDKLIKVWE-LSGRKL---FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS--RVDYDAPGHW 540 (1012)
Q Consensus 467 ~l~s~~~d~~v~vwd-~~~~~~---~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~--~~~~~~~~~~ 540 (1012)
.++||.--+.|++|. .+|.-. ..|.+|+..|-.++|+|..+ ..|++|+-||+|+|||++.+.. ....+.|++.
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~-~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sD 304 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTED-GVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSD 304 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccC-ceEEeeecCceEEEEEecCCCccceeEeeccCCc
Confidence 488888889999999 666543 45678999999999999876 5899999999999999998733 3345788889
Q ss_pred EEEEEEccCCCeEEEeeecCCCCCcEEEEeCCC---CeeeeeecCCCCCcceEEEEecCC-CEEEEEeCCCcEEEEeCCC
Q 001790 541 CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE---GTIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDN 616 (1012)
Q Consensus 541 v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~---~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~ 616 (1012)
|+.+.|+.+-.+|++|+ .+|++.|||++. ++++..|.-|.. +|+++.|+|.. ..|+++|.|.+|.+||+.-
T Consensus 305 VNVISWnr~~~lLasG~----DdGt~~iwDLR~~~~~~pVA~fk~Hk~-pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGG----DDGTLSIWDLRQFKSGQPVATFKYHKA-PITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eeeEEccCCcceeeecC----CCceEEEEEhhhccCCCcceeEEeccC-CeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 99999999988888887 599999999975 667888988877 99999999965 5677788999999999853
Q ss_pred Cee----------------EEEEecCCCCCCcceeEeecC-CCEEEEEECCCcEEEE
Q 001790 617 VNI----------------LTSTDAEGGLPNLPRLRFSKE-GNLLAVTTADNGFKIL 656 (1012)
Q Consensus 617 ~~~----------------~~~~~~~~~~~~v~~v~~s~~-g~~l~~~~~dg~i~iw 656 (1012)
..- .+.+-.|.+...+..+.|++. ..++++.+.||. .||
T Consensus 380 E~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf-nVf 435 (440)
T KOG0302|consen 380 EADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF-NVF 435 (440)
T ss_pred cCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce-eEE
Confidence 211 112333444557888999985 446666666653 344
No 171
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.81 E-value=1.9e-18 Score=170.33 Aligned_cols=236 Identities=13% Similarity=0.203 Sum_probs=184.5
Q ss_pred eeccCCCcceEEEEEcc-CCCEEEEEECCCeEEEEeecCCCcc----eeeeeeeccccCeEEEEEeCCCCceEEEEEcCC
Q 001790 400 SIFKDVPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDL----RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (1012)
Q Consensus 400 ~~~~~h~~~V~~v~~sp-dg~~las~~~d~~v~vwd~~~~~~~----~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d 474 (1012)
..+.||.++|..++|+| +...||+|+.|.+|.||++..+... .....|.+|...|--++|+|...+ .|++++.|
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~D 153 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSD 153 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCC
Confidence 45889999999999999 7889999999999999998754332 233468899999999999999887 78999999
Q ss_pred CcEEEEe-CCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCC-cEEEEEEccCCCe
Q 001790 475 KLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH-WCTTMLYSADGSR 552 (1012)
Q Consensus 475 ~~v~vwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~ 552 (1012)
.+|.+|| .+|+.+.++. |.+.|++++|+. ||.++++++.|..||+||.+++.....-..|.+ .-..+.|-.+|.
T Consensus 154 n~v~iWnv~tgeali~l~-hpd~i~S~sfn~--dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~- 229 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLD-HPDMVYSMSFNR--DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK- 229 (472)
T ss_pred ceEEEEeccCCceeeecC-CCCeEEEEEecc--CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-
Confidence 9999999 8999888888 999999999966 778999999999999999999888877766654 556677888998
Q ss_pred EEEeeecCCCCCcEEEEeCCCCeeeeee-cCCCCCcceEEEEecCCCEEEEEe-CCCcEEEEeCCCCee-EEEEecCCCC
Q 001790 553 LFSCGTSKDGDSFLVEWNESEGTIKRTY-AGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNI-LTSTDAEGGL 629 (1012)
Q Consensus 553 l~~~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~~~~~ 629 (1012)
+++.+.++-.+..+-+||..+-+.-..+ ...+...|..--+.+|.+.++.+| .|+.|+-|.+.+..+ +..+......
T Consensus 230 i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~ 309 (472)
T KOG0303|consen 230 IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSK 309 (472)
T ss_pred eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccC
Confidence 7777666667899999997664332222 222233466667888989888877 799999999977653 3333222222
Q ss_pred CCcceeEeecC
Q 001790 630 PNLPRLRFSKE 640 (1012)
Q Consensus 630 ~~v~~v~~s~~ 640 (1012)
.+-..+.|-|.
T Consensus 310 epQRG~g~mPK 320 (472)
T KOG0303|consen 310 EPQRGMGFMPK 320 (472)
T ss_pred Ccccccccccc
Confidence 34456666664
No 172
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.81 E-value=3e-18 Score=168.88 Aligned_cols=219 Identities=15% Similarity=0.186 Sum_probs=175.9
Q ss_pred CCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCC-------cceeeecCCccCEEEEeccccCCc
Q 001790 437 GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-------RKLFNFEGHEAPVYSICPHHKENI 508 (1012)
Q Consensus 437 ~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~-------~~~~~~~~h~~~v~~~~~~~~~~~ 508 (1012)
+|+.-.....+.||+++|..++|+|-+.. .+||||+|.+|.||. ..+ +++..+.||...|..++|||...
T Consensus 67 ~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~-vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~- 144 (472)
T KOG0303|consen 67 TGRMDASYPLVCGHTAPVLDIDWCPFNDC-VIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP- 144 (472)
T ss_pred ccccCCCCCCccCccccccccccCccCCc-eeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch-
Confidence 44444444457799999999999998877 899999999999999 333 34678899999999999999865
Q ss_pred eEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcc
Q 001790 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSN 588 (1012)
Q Consensus 509 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v 588 (1012)
+.|++++.|.+|.+|++.++.....+. |...|.++.|+.||.++++.+ .|..|++||.++++.+..-.+|.+...
T Consensus 145 NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~Ttc----kDKkvRv~dpr~~~~v~e~~~heG~k~ 219 (472)
T KOG0303|consen 145 NVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTC----KDKKVRVIDPRRGTVVSEGVAHEGAKP 219 (472)
T ss_pred hhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeec----ccceeEEEcCCCCcEeeecccccCCCc
Confidence 689999999999999999999988887 999999999999999999998 599999999999999998888887666
Q ss_pred eEEEEecCCCEEEEEe---CCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEE-CCCcEEEEEccCCc
Q 001790 589 GVVQFDTTQNHFLAVG---EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGL 662 (1012)
Q Consensus 589 ~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~dg~i~iwd~~~~~ 662 (1012)
..+.|-.++..+-+|- .+..+-+||..+-+....+..-.....|.---|.+|...+..++ .|+.||.|.+.+..
T Consensus 220 ~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 220 ARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 7788888888444442 57899999977644322222112223455556788888877665 48999999998764
No 173
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.81 E-value=1.2e-18 Score=167.09 Aligned_cols=284 Identities=10% Similarity=0.111 Sum_probs=196.4
Q ss_pred cceEEEEecCCCEEEEEeCCCcEEEEeCCCCe------------eEEEEecCCCCCCcceeEee-------cCCCEEEEE
Q 001790 587 SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN------------ILTSTDAEGGLPNLPRLRFS-------KEGNLLAVT 647 (1012)
Q Consensus 587 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~------------~~~~~~~~~~~~~v~~v~~s-------~~g~~l~~~ 647 (1012)
-...+.|+|||..|++-+.|..+.+|++...- ....+.... ...|...+|- |+..++|+.
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~e-g~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQE-GETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEecc-CCEEEEEEeeeccccCCCccceeeec
Confidence 34568899999999999999999999985310 111111111 1246666664 677899999
Q ss_pred ECCCcEEEEEccCCceeeecccCCccccccCccceeeeccccccccccCCCCCccccccCCCCCCccccCCCCCCCCCCC
Q 001790 648 TADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDK 727 (1012)
Q Consensus 648 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1012)
+.+.-|++||.-+++ .............-....+++|+|||..|.++
T Consensus 130 sr~~PIh~wdaftG~-lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-------------------------------- 176 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGK-LRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-------------------------------- 176 (406)
T ss_pred cccCceeeeeccccc-cccchhhhhhHHhhhhheeEEecCCCCeEeec--------------------------------
Confidence 999999999999883 22222211111111234578888888887533
Q ss_pred CcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcc-eEEEeeccCeeEeeeccccccCCCCCccc
Q 001790 728 PRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV-GLLALGSNGVQKLWKWHRNEQNPSGKATA 806 (1012)
Q Consensus 728 ~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~~~~~dg~i~~w~~~~~~~~~~g~~~~ 806 (1012)
..+.|+++|+...............+..+..+-|.+++|+|-.. .++.++-...+-+|.-..
T Consensus 177 ------ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~----------- 239 (406)
T KOG2919|consen 177 ------YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG----------- 239 (406)
T ss_pred ------ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC-----------
Confidence 33778888874322222222222222344567788999999665 677777677777765322
Q ss_pred cccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEEEc--CCcEEEEEcCCC-eEEEEEcCCCC-CeeEE--EE
Q 001790 807 SAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTF-KVMTTFMSPPP-ASTFL--AF 880 (1012)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s--dg~i~lwd~~~~-~~~~~~~~~~~-~i~~l--~~ 880 (1012)
+.++. .+.+ |.+.|+.++|.+||+.|.+|+ +.+|..||++.. ..+..+..|.+ .-..+ ..
T Consensus 240 -----------~~pl~-llgg--h~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDl 305 (406)
T KOG2919|consen 240 -----------RRPLQ-LLGG--HGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDL 305 (406)
T ss_pred -----------CCcee-eecc--cCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEec
Confidence 11221 1334 999999999999999999998 789999999743 45556666655 22333 45
Q ss_pred ecCCCcEEEEEeCCCeEEEEEccC-CeEeEEecccCCCeEEEEEcCCCCEEEEEeCC
Q 001790 881 HPQDNNIIAIGTEDSTIHIYNVRV-DEVKSKLKGHQKRITGLAFSTSLNILVSSGAD 936 (1012)
Q Consensus 881 sp~d~~~las~~~dg~v~iwd~~~-~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D 936 (1012)
.| ++++||+|+.||.|++||+++ |..+..+..|+..|+.++++|--.++|+++..
T Consensus 306 d~-~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 306 DP-KGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred CC-CCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 67 899999999999999999998 77788888899999999999998888887754
No 174
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.80 E-value=1.1e-17 Score=165.96 Aligned_cols=158 Identities=16% Similarity=0.225 Sum_probs=133.5
Q ss_pred CcceEEEEEccCCC-EEEEEECCCeEEEEeecCCCc------ceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEE
Q 001790 406 PISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSND------LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1012)
Q Consensus 406 ~~~V~~v~~spdg~-~las~~~d~~v~vwd~~~~~~------~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~ 478 (1012)
..+|.++.|.+++. .||||+.|..|++|.+..++. +.....|..|...|+++.|+|+|. .++||+.+|.|.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge--lLASg~D~g~v~ 90 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE--LLASGGDGGEVF 90 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC--eeeecCCCceEE
Confidence 45899999999777 999999999999998875433 334456789999999999999999 999999999999
Q ss_pred EEeCC--------C---------cceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcE
Q 001790 479 VWELS--------G---------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWC 541 (1012)
Q Consensus 479 vwd~~--------~---------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v 541 (1012)
+|... . ...+.+.+|...|..++|++ ++.++++++.|..+++||+..+.....+..|.+.+
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~--d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yv 168 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP--DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYV 168 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC--CCceeeeeeccceEEEEEeccceeEeecccccccc
Confidence 99822 1 12356678999999999976 66899999999999999999999999999999999
Q ss_pred EEEEEccCCCeEEEeeecCCCCCcEEEEeC
Q 001790 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1012)
Q Consensus 542 ~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~ 571 (1012)
..++|.|-++++++-+. +...+.+++
T Consensus 169 qgvawDpl~qyv~s~s~----dr~~~~~~~ 194 (434)
T KOG1009|consen 169 QGVAWDPLNQYVASKSS----DRHPEGFSA 194 (434)
T ss_pred ceeecchhhhhhhhhcc----Ccccceeee
Confidence 99999999999998875 444444443
No 175
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.79 E-value=4.8e-17 Score=166.35 Aligned_cols=272 Identities=15% Similarity=0.196 Sum_probs=189.5
Q ss_pred cCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE
Q 001790 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1012)
Q Consensus 342 ~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 421 (1012)
.|...|.|+.|+.+.. ++.+++ |..+.+|.-.+......... ..... + ...|-.+-. ..=-.....+
T Consensus 12 r~~e~vc~v~w~~~ee-i~~~~d-Dh~~~~~~~~~~~s~~~~~~-----p~df~--p---t~~h~~~rs-~~~g~~~d~~ 78 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEE-IYFVSD-DHQIFKWSDVSRDSVEVAKL-----PDDFV--P---TDMHLGGRS-SGGGKGSDTL 78 (737)
T ss_pred ccceeEEeecccccce-EEEecc-CceEEEeecccchhhhhhhC-----CcccC--C---ccccccccc-cCCCCCcceE
Confidence 4777889999999887 566554 66666665433222110000 00000 0 000100000 0000123578
Q ss_pred EEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEeCCCcceeeecCCccCEEEEe
Q 001790 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSIC 501 (1012)
Q Consensus 422 as~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~h~~~v~~~~ 501 (1012)
+.++.||.+.|.+-.. +.-+ ....|.+.|.+-.|+|||. -++++++||.|++|..+|-.-.++.....+|+|++
T Consensus 79 ~i~s~DGkf~il~k~~-rVE~---sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 79 LICSNDGRFVILNKSA-RVER---SISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCAR 152 (737)
T ss_pred EEEcCCceEEEecccc-hhhh---hhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEeccchHHHHHhhcCceeEEEE
Confidence 8889999988876443 2222 5778999999999999999 89999999999999999988777777888999999
Q ss_pred ccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeec
Q 001790 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1012)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~ 581 (1012)
|.|+.+ ..+++.+ +.+.+=-+........+..|.+-|.++.|++..+.+++++ +|-..++||.. |..+..-.
T Consensus 153 W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgG----ED~kfKvWD~~-G~~Lf~S~ 224 (737)
T KOG1524|consen 153 WAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGG----EDFRFKIWDAQ-GANLFTSA 224 (737)
T ss_pred ECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecC----CceeEEeeccc-CcccccCC
Confidence 988754 4555544 4555555666677788899999999999999999999998 69999999954 55555555
Q ss_pred CCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEE
Q 001790 582 GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (1012)
Q Consensus 582 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw 656 (1012)
.|.- +|++++|.|+ ..++.++.+ +++ +.. ...+.|..++||+||..++.|+..|.+.+=
T Consensus 225 ~~ey-~ITSva~npd-~~~~v~S~n-t~R------------~~~-p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 225 AEEY-AITSVAFNPE-KDYLLWSYN-TAR------------FSS-PRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred hhcc-ceeeeeeccc-cceeeeeee-eee------------ecC-CCccceEEEEEcCCCceeeccccCceEEEe
Confidence 5544 8999999999 555665543 333 211 223478999999999999999999887653
No 176
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.78 E-value=6.9e-19 Score=188.87 Aligned_cols=279 Identities=17% Similarity=0.265 Sum_probs=216.2
Q ss_pred EeecCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCC
Q 001790 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1012)
Q Consensus 339 ~~~~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 418 (1012)
+.++|-..|+|+.|...|. ++++|+.|..|+||...++.++.+ +.||.+.|+.++.+.+.
T Consensus 185 rLlgH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs~~n 244 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVSSNN 244 (1113)
T ss_pred HHHhhhhheeeeeeccccc-eEeecCccceeeeeeccchhhhcc-------------------CCCCccccchhccchhh
Confidence 3467999999999999999 699999999999999999988875 88999999999999999
Q ss_pred CEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEeCCCcceee----ecC-C
Q 001790 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN----FEG-H 493 (1012)
Q Consensus 419 ~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd~~~~~~~~----~~~-h 493 (1012)
.++|+++.|..|++|.+.++..+. .+.+|++.|++++|+|- .+.+.||++++||..-.++.. +.. .
T Consensus 245 ~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~~~~ 315 (1113)
T KOG0644|consen 245 TMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLKFTE 315 (1113)
T ss_pred hhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCCccc
Confidence 999999999999999999998877 58899999999999984 467889999999933222111 111 1
Q ss_pred ccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCC-eEEEeeecCCCCCcEEEEeCC
Q 001790 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS-RLFSCGTSKDGDSFLVEWNES 572 (1012)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~i~lwd~~ 572 (1012)
...+.++.| ..++..+++++.|+.-..|.+.... .+...+.-+..+.|-. +.++.- .+-.+.+|++.
T Consensus 316 ~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar----~~~~~~vwnl~ 383 (1113)
T KOG0644|consen 316 KDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTAR----NDHRLCVWNLY 383 (1113)
T ss_pred ccceeeeec--cccccccccccCCcccccchhhHhh------hhccceEEEeccccccccceeee----eeeEeeeeecc
Confidence 234555555 3356778999999998888654211 1111222222222322 233332 36778899999
Q ss_pred CCeeeeeecCCCCCcceEEEEecCCCEE-EEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCC
Q 001790 573 EGTIKRTYAGFRKKSNGVVQFDTTQNHF-LAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN 651 (1012)
Q Consensus 573 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg 651 (1012)
+|.....+.+|.. .+..+.++|-...+ .+++.||...|||+-.|.+++.+... + ..+....||++|..++....-|
T Consensus 384 ~g~l~H~l~ghsd-~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h-~kl~d~kFSqdgts~~lsd~hg 460 (1113)
T KOG0644|consen 384 TGQLLHNLMGHSD-EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-H-GKLVDGKFSQDGTSIALSDDHG 460 (1113)
T ss_pred cchhhhhhccccc-ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc-c-ceeeccccCCCCceEecCCCCC
Confidence 9999999999887 88999999977554 56889999999999999888877643 3 3677889999999999988889
Q ss_pred cEEEEEccCC
Q 001790 652 GFKILANAIG 661 (1012)
Q Consensus 652 ~i~iwd~~~~ 661 (1012)
.++|.....+
T Consensus 461 ql~i~g~gqs 470 (1113)
T KOG0644|consen 461 QLYILGTGQS 470 (1113)
T ss_pred ceEEeccCCC
Confidence 9999876554
No 177
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=1.8e-18 Score=178.85 Aligned_cols=265 Identities=15% Similarity=0.233 Sum_probs=191.0
Q ss_pred eec-CCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCC
Q 001790 340 SLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1012)
Q Consensus 340 ~~~-h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 418 (1012)
++. |.+.|++++|+|... .|++++.||++.+|++.....-....+ .+...+.+|.++|.|+++++++
T Consensus 289 tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~~-----------epi~tfraH~gPVl~v~v~~n~ 356 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEKDV-----------EPILTFRAHEGPVLCVVVPSNG 356 (577)
T ss_pred eeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccccce-----------eeeEEEecccCceEEEEecCCc
Confidence 444 999999999999999 699999999999999943221111111 1224588999999999999999
Q ss_pred CEEEEEECCCeEEEEeecCCC-------cceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeee
Q 001790 419 NYVGVAFTKHLIQLYSYAGSN-------DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF 490 (1012)
Q Consensus 419 ~~las~~~d~~v~vwd~~~~~-------~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~ 490 (1012)
..+.+|+.||+|+.|++.... .......+.||++.|+.+++++... .|++|+.||+++.|+ ....+ .+|
T Consensus 357 ~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~~f 433 (577)
T KOG0642|consen 357 EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-CTF 433 (577)
T ss_pred eEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-ccc
Confidence 999999999999999664221 1122235779999999999999888 799999999999999 44444 444
Q ss_pred cCCc--cCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCC-------CCcEEEEEEccCCCeEEEeeecCC
Q 001790 491 EGHE--APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-------GHWCTTMLYSADGSRLFSCGTSKD 561 (1012)
Q Consensus 491 ~~h~--~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~~~~ 561 (1012)
..-. +...++.+-.+. -...++...-+.-.+.+++.......+... ...+.-+.+.|.+...+++.
T Consensus 434 ~~~~e~g~Plsvd~~ss~-~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~h---- 508 (577)
T KOG0642|consen 434 GEPKEHGYPLSVDRTSSR-PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAH---- 508 (577)
T ss_pred CCccccCCcceEeeccch-hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecc----
Confidence 3222 223334332111 012222222233333344433333332211 13567788899998888887
Q ss_pred CCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEec
Q 001790 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1012)
Q Consensus 562 ~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1012)
+++.|+++|..++.++.....|.. .++++++.|+|.+|++++.||.+++|.+....++.....
T Consensus 509 ed~~Ir~~dn~~~~~l~s~~a~~~-svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~ 571 (577)
T KOG0642|consen 509 EDRSIRFFDNKTGKILHSMVAHKD-SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTA 571 (577)
T ss_pred cCCceecccccccccchheeeccc-eecceeecCCCceEEeecCCceeehhhccchheeecccc
Confidence 699999999999999999988877 899999999999999999999999999987766655443
No 178
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=2.3e-18 Score=192.99 Aligned_cols=261 Identities=12% Similarity=0.147 Sum_probs=201.1
Q ss_pred ceEeecCCCceEEEEEecCCCc---EEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEE
Q 001790 337 VAVSLHQGSTVISMDFHPSHQT---LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1012)
Q Consensus 337 ~~~~~~h~~~V~~~~~spdg~~---llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 413 (1012)
....+.....-+.++|.+.|.. ++|.|..||.|.+||...- +...... .......|.+.|..+.
T Consensus 57 ~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~--~~~~~~~-----------~la~~~~h~G~V~gLD 123 (1049)
T KOG0307|consen 57 PVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASI--IANASEE-----------VLATKSKHTGPVLGLD 123 (1049)
T ss_pred ccccccccccceeeeecccCCCccceeeccccCCceEEecchhh--ccCcchH-----------HHhhhcccCCceeeee
Confidence 3344455678899999998886 6999999999999998652 1100000 0122566999999999
Q ss_pred EccCCC-EEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeec
Q 001790 414 WSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE 491 (1012)
Q Consensus 414 ~spdg~-~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~ 491 (1012)
|++.+. +||+|+.||.|.|||+..-+...... -..-...|.+++|+..-.. .|++++.+|.+.||| ...+++..+.
T Consensus 124 fN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls 201 (1049)
T KOG0307|consen 124 FNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLS 201 (1049)
T ss_pred ccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCcccccc
Confidence 999655 99999999999999998754433211 1124568999999987776 799999999999999 6667777776
Q ss_pred CCcc--CEEEEeccccCCceEEEEEecC-C--eEEEEEcCCCCc-eeeecCCCCcEEEEEEccCC-CeEEEeeecCCCCC
Q 001790 492 GHEA--PVYSICPHHKENIQFIFSTAID-G--KIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADG-SRLFSCGTSKDGDS 564 (1012)
Q Consensus 492 ~h~~--~v~~~~~~~~~~~~~l~s~~~d-g--~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~ 564 (1012)
.+.. .+..++|||+... .+++++.| + .|.+||++.... ...+..|...|.++.|++.+ +++++++ .|+
T Consensus 202 ~~~~~~~~S~l~WhP~~aT-ql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg----kD~ 276 (1049)
T KOG0307|consen 202 DTPGRMHCSVLAWHPDHAT-QLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG----KDN 276 (1049)
T ss_pred cCCCccceeeeeeCCCCce-eeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc----CCC
Confidence 6554 4778999998654 45555544 3 699999887554 44667899999999999977 7777877 699
Q ss_pred cEEEEeCCCCeeeeeecCCCCCcceEEEEecCCC-EEEEEeCCCcEEEEeCCCCe
Q 001790 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNVN 618 (1012)
Q Consensus 565 ~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~ 618 (1012)
.|.+|+..+++.+..+....+ .+..+.|+|... .+++++-||.|.|+.+.+..
T Consensus 277 ~ii~wN~~tgEvl~~~p~~~n-W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 277 RIICWNPNTGEVLGELPAQGN-WCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CeeEecCCCceEeeecCCCCc-ceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 999999999999999987444 788899999876 67778899999999987654
No 179
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=5.6e-17 Score=166.37 Aligned_cols=240 Identities=14% Similarity=0.156 Sum_probs=163.6
Q ss_pred eeccCCCcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEE
Q 001790 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1012)
Q Consensus 400 ~~~~~h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~v 479 (1012)
..+.||++.|.|+.|+.||.+|++|+.|-.+.|||.-..+.+..+. .||.+.|.++.|-|....-.+++|..|..|++
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~--TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS--TGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee--cccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 3489999999999999999999999999999999998777666543 39999999999999765558999999999999
Q ss_pred EeCC-----------CcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCcee----------eecCCC
Q 001790 480 WELS-----------GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----------DYDAPG 538 (1012)
Q Consensus 480 wd~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~----------~~~~~~ 538 (1012)
+|.+ ......+..|...|..++..+... ..+.++++||+|+-+|++...... .+...-
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P-htfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP-HTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCC-ceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 9933 133456678999999998766432 689999999999999998632211 111111
Q ss_pred CcEEEEEEccCCC-eEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCC--
Q 001790 539 HWCTTMLYSADGS-RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD-- 615 (1012)
Q Consensus 539 ~~v~~~~~s~~~~-~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~-- 615 (1012)
-...+++++|... +|++|+ .+...++||.+.. +..+..... ..++|-. .++.++-|-..
T Consensus 201 ielk~ltisp~rp~~laVGg----sdpfarLYD~Rr~--lks~~s~~~-----~~~~pp~-------~~~cv~yf~p~hl 262 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGG----SDPFARLYDRRRV--LKSFRSDGT-----MNTCPPK-------DCRCVRYFSPGHL 262 (758)
T ss_pred heeeeeeecCCCCceEEecC----CCchhhhhhhhhh--ccCCCCCcc-----ccCCCCc-------ccchhheecCccc
Confidence 2567899999665 566666 4888999996422 111111100 1111100 01111111110
Q ss_pred ---CCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCCceeee
Q 001790 616 ---NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLR 666 (1012)
Q Consensus 616 ---~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~ 666 (1012)
.+...... ..++-+.|+|+|.-|.+.-....|+++|+..++....
T Consensus 263 kn~~gn~~~~~------~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 263 KNSQGNLDRYI------TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred cCcccccccce------eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 11111000 0246788999998888877777999999987754443
No 180
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.77 E-value=8.9e-17 Score=154.72 Aligned_cols=337 Identities=12% Similarity=0.171 Sum_probs=212.3
Q ss_pred EEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEE-eCCCcEEEEeCCCCeeEE
Q 001790 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV-GEDSQIKFWDMDNVNILT 621 (1012)
Q Consensus 543 ~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~ 621 (1012)
-.+|||+|++++++. +..+.+-|..+-+..+.|.... .|.-+.|..|..+++++ ..++.|.+|++...+-..
T Consensus 13 ~c~fSp~g~yiAs~~-----~yrlviRd~~tlq~~qlf~cld--ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c 85 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLS-----RYRLVIRDSETLQLHQLFLCLD--KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC 85 (447)
T ss_pred ceeECCCCCeeeeee-----eeEEEEeccchhhHHHHHHHHH--HhhheeeeccceeeeeeeeccceEEEEEeecceeEE
Confidence 357999999999997 6688888988888777766543 46668888888887776 478899999999888777
Q ss_pred EEecCCCCCCcceeEeecCCCEEEEE-ECCCcEEEEEccCCceeeecccCCccccccCccceeeeccccccccccCCCCC
Q 001790 622 STDAEGGLPNLPRLRFSKEGNLLAVT-TADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPAN 700 (1012)
Q Consensus 622 ~~~~~~~~~~v~~v~~s~~g~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~ 700 (1012)
.++.. ...+..+.|||||+.+... .-+-.|.+|.+.+.....-.... ..+..++|+|||++.+.....+.
T Consensus 86 kIdeg--~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK-------~~~kg~~f~~dg~f~ai~sRrDC 156 (447)
T KOG4497|consen 86 KIDEG--QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPK-------TNVKGYAFHPDGQFCAILSRRDC 156 (447)
T ss_pred EeccC--CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccc-------cCceeEEECCCCceeeeeecccH
Confidence 77643 4478999999999666554 45889999999876433322221 23567899999998764333221
Q ss_pred ccc-cccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceE
Q 001790 701 CKV-ERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGL 779 (1012)
Q Consensus 701 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 779 (1012)
..+ ... ++ +-|.+-. .+ ....-..+.+.++|||..+
T Consensus 157 kdyv~i~------------------------~c------~~W~ll~--------~f-----~~dT~DltgieWsPdg~~l 193 (447)
T KOG4497|consen 157 KDYVQIS------------------------SC------KAWILLK--------EF-----KLDTIDLTGIEWSPDGNWL 193 (447)
T ss_pred HHHHHHH------------------------hh------HHHHHHH--------hc-----CCCcccccCceECCCCcEE
Confidence 110 000 00 0111100 00 0011223445555555544
Q ss_pred EEeecc--CeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEEEc-CCcEEE
Q 001790 780 LALGSN--GVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISL 856 (1012)
Q Consensus 780 ~~~~~d--g~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~l 856 (1012)
++-..- -.|..|. -.-.+..+++||.+++|++|+ |+.+++
T Consensus 194 aVwd~~Leykv~aYe-------------------------------------~~lG~k~v~wsP~~qflavGsyD~~lrv 236 (447)
T KOG4497|consen 194 AVWDNVLEYKVYAYE-------------------------------------RGLGLKFVEWSPCNQFLAVGSYDQMLRV 236 (447)
T ss_pred EEecchhhheeeeee-------------------------------------eccceeEEEeccccceEEeeccchhhhh
Confidence 432211 1111110 122344455555555555555 554444
Q ss_pred EEcCCCeE------------------------------------------------------------EEEEc------C
Q 001790 857 FNMMTFKV------------------------------------------------------------MTTFM------S 870 (1012)
Q Consensus 857 wd~~~~~~------------------------------------------------------------~~~~~------~ 870 (1012)
.+--+-+. ++.++ .
T Consensus 237 lnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pn 316 (447)
T KOG4497|consen 237 LNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPN 316 (447)
T ss_pred hceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCC
Confidence 32211110 11111 1
Q ss_pred CCCCeeEEEEecCCCcEEEEEeCC--CeEEEEEccCCeEeEEecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 001790 871 PPPASTFLAFHPQDNNIIAIGTED--STIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWE 948 (1012)
Q Consensus 871 ~~~~i~~l~~sp~d~~~las~~~d--g~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~ 948 (1012)
....+.-++|++ |..++|+-.+. +.+-+||++..+....+. ...+|....|.|....|+.+.....+++|......
T Consensus 317 Pk~g~g~lafs~-Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~ 394 (447)
T KOG4497|consen 317 PKCGAGKLAFSC-DSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPR 394 (447)
T ss_pred cccccceeeecC-CceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCce
Confidence 222466799999 99998876543 479999999877665554 55789999999999998888878889999987733
Q ss_pred ccccEEEecCCCCCCCCceEEEEcCCCCEEEEEeCC
Q 001790 949 KRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHET 984 (1012)
Q Consensus 949 ~~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~d~ 984 (1012)
.+..+... -.|..+.|..+|..++..+..
T Consensus 395 -----~V~vP~~G--F~i~~l~W~~~g~~i~l~~kD 423 (447)
T KOG4497|consen 395 -----VVGVPKKG--FNIQKLQWLQPGEFIVLCGKD 423 (447)
T ss_pred -----EEecCCCC--ceeeeEEecCCCcEEEEEcCC
Confidence 44544443 578999999999999887433
No 181
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3.6e-18 Score=173.10 Aligned_cols=293 Identities=17% Similarity=0.232 Sum_probs=229.5
Q ss_pred cCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc--CCC
Q 001790 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGN 419 (1012)
Q Consensus 342 ~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~ 419 (1012)
+|.+.|..+.|...|. +|++|+.|..|.+||+..++.... ...||...|....|-| +.+
T Consensus 140 ~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKFiP~s~d~ 200 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKFIPFSGDR 200 (559)
T ss_pred CCCCccceeeecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhccCCCCCc
Confidence 3999999999999999 799999999999999998876543 3678999999999988 567
Q ss_pred EEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeee---cCCcc
Q 001790 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF---EGHEA 495 (1012)
Q Consensus 420 ~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~---~~h~~ 495 (1012)
.+++++.||.|++=.+.....+.....+..|.++|.-++.-|+..+ -|.+++.|+.+.-.| ..+.+...+ ..+..
T Consensus 201 ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~ 279 (559)
T KOG1334|consen 201 TIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK 279 (559)
T ss_pred CceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeeeccCCc
Confidence 8999999999999887654444434457789999999999999887 799999999999999 555443333 22333
Q ss_pred ---CEEEEeccccCCceEEEEEecCCeEEEEEcCCCCce------eeec------CCCCcEEEEEEccCCCeEEEeeecC
Q 001790 496 ---PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR------VDYD------APGHWCTTMLYSADGSRLFSCGTSK 560 (1012)
Q Consensus 496 ---~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~------~~~~------~~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1012)
....++..|... ..+++++.|..+++||.+..... ..+. .....|++++|+.++.-+++..
T Consensus 280 ~~v~L~~Ia~~P~nt-~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY--- 355 (559)
T KOG1334|consen 280 ERVGLYTIAVDPRNT-NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY--- 355 (559)
T ss_pred cceeeeeEecCCCCc-cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeee---
Confidence 467788877643 58999999999999998653332 1111 2233799999998877776665
Q ss_pred CCCCcEEEEeCCC--C----------eeee-eecCCCCC-cceEE-EEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEec
Q 001790 561 DGDSFLVEWNESE--G----------TIKR-TYAGFRKK-SNGVV-QFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1012)
Q Consensus 561 ~~~~~i~lwd~~~--~----------~~~~-~~~~~~~~-~v~~~-~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1012)
.|-.|+++.-.. | ..+. .+++|... .|..+ -|.|...++++|+.-|.|.||+-.+++.+..+..
T Consensus 356 -nDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Meg 434 (559)
T KOG1334|consen 356 -NDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEG 434 (559)
T ss_pred -cccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhc
Confidence 477788885432 2 2233 37788652 25444 4578889999999999999999999999998887
Q ss_pred CCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCC
Q 001790 626 EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1012)
Q Consensus 626 ~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~ 661 (1012)
..+ -|+|+.-+|--..||+.+-|..|+||...+.
T Consensus 435 Dr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 435 DRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred ccc--eEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 766 7999999999999999999999999987443
No 182
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.77 E-value=8.3e-16 Score=167.01 Aligned_cols=217 Identities=10% Similarity=0.131 Sum_probs=140.7
Q ss_pred eEEEEEecCcceEEEeec-cCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCE
Q 001790 767 VVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSY 845 (1012)
Q Consensus 767 i~~l~~s~~g~~l~~~~~-dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 845 (1012)
...++++|+|+++++++. ++.+.+|+++.... .. .... .+. ......+++++|||++
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~-----~~-------------~~~~-~~~---~~~~~~~~~~~p~g~~ 139 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGI-----PV-------------APIQ-IIE---GLEGCHSANIDPDNRT 139 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCC-----CC-------------Ccee-ecc---CCCcccEeEeCCCCCE
Confidence 467899999998888775 78999998753210 00 0000 011 2234567889999999
Q ss_pred EEEEc--CCcEEEEEcCCCeEEE-------EEcCCCCCeeEEEEecCCCcEEEEEeC-CCeEEEEEccC--C--eEeEEe
Q 001790 846 VMSAT--GGKISLFNMMTFKVMT-------TFMSPPPASTFLAFHPQDNNIIAIGTE-DSTIHIYNVRV--D--EVKSKL 911 (1012)
Q Consensus 846 la~~s--dg~i~lwd~~~~~~~~-------~~~~~~~~i~~l~~sp~d~~~las~~~-dg~v~iwd~~~--~--~~~~~~ 911 (1012)
+++++ ++.|.+||+.+...+. ... .......++|+| ++++++++.. +++|.+|+++. + +.+.++
T Consensus 140 l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~ 217 (330)
T PRK11028 140 LWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTL 217 (330)
T ss_pred EEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEE
Confidence 97766 6899999997633221 111 123467899999 8888877776 89999999973 3 334444
Q ss_pred ccc------CCCeEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCCccccEEEecCCCCCCCCceEEEEcCCCCEEEEE--e
Q 001790 912 KGH------QKRITGLAFSTSLNILVSSGA-DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV--H 982 (1012)
Q Consensus 912 ~~h------~~~V~~l~~spdg~~l~s~s~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~--~ 982 (1012)
..+ ......+.|+|||++|+++.. ++.|.+|+++.........-....+ .....+.|+|||++|+++ .
T Consensus 218 ~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~~~ 294 (330)
T PRK11028 218 DMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE---TQPRGFNIDHSGKYLIAAGQK 294 (330)
T ss_pred ecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc---ccCCceEECCCCCEEEEEEcc
Confidence 321 122346889999999998854 7899999996543221211222222 234678999999999997 3
Q ss_pred CCeEEEEECC--Cc--eEEEeecC-CCeeEEEe
Q 001790 983 ETQLAIYDAS--KM--ERIRQVGS-PHICSIIF 1010 (1012)
Q Consensus 983 d~~i~vwd~~--~~--~~~~~~~~-~~i~~~~f 1010 (1012)
+++|.+|+++ +| +.+..+.. ....+++|
T Consensus 295 ~~~v~v~~~~~~~g~l~~~~~~~~g~~P~~~~~ 327 (330)
T PRK11028 295 SHHISVYEIDGETGLLTELGRYAVGQGPMWVSV 327 (330)
T ss_pred CCcEEEEEEcCCCCcEEEccccccCCCceEEEE
Confidence 7899999874 34 33444432 44445544
No 183
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3.7e-17 Score=160.48 Aligned_cols=295 Identities=12% Similarity=0.146 Sum_probs=210.4
Q ss_pred eecCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecc-cccccccccccCccccceeccCCCcceEEEEEccCC
Q 001790 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVS-KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1012)
Q Consensus 340 ~~~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 418 (1012)
.++|.+.|+++.||.+|+ +||+|+.|..+++|++...-.... +++.+ .-..|...|.|++|....
T Consensus 52 ~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~~-------------~~~~H~SNIF~L~F~~~N 117 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIGV-------------MEHPHRSNIFSLEFDLEN 117 (609)
T ss_pred hhhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCcee-------------ccCccccceEEEEEccCC
Confidence 356999999999999998 799999999999999854221111 11111 123467899999999999
Q ss_pred CEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCc-ce--eeecCCc
Q 001790 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR-KL--FNFEGHE 494 (1012)
Q Consensus 419 ~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~-~~--~~~~~h~ 494 (1012)
+++.+|+.+++|...|+++.+.+.... -....+.|+.+..+|... .|++.+.++.|.+|| .... .+ ..+....
T Consensus 118 ~~~~SG~~~~~VI~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~ 194 (609)
T KOG4227|consen 118 RFLYSGERWGTVIKHDIETKQSIYVAN-ENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPANSG 194 (609)
T ss_pred eeEecCCCcceeEeeecccceeeeeec-ccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeecCCC
Confidence 999999999999999999987665221 112345899999999977 799999999999999 3332 22 2233445
Q ss_pred cCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceee-------ecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEE
Q 001790 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-------YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1012)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~-------~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 567 (1012)
.....+-|+|... .+|++.+..+-+-+||.+....... +......-.++.|+|.|..+++.-. ...-.
T Consensus 195 ~~F~t~~F~P~~P-~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR----~~~P~ 269 (609)
T KOG4227|consen 195 KNFYTAEFHPETP-ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR----GKCPL 269 (609)
T ss_pred ccceeeeecCCCc-eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----cCCCE
Confidence 5677888888643 6899999999999999886543321 1111223467889999999988752 34446
Q ss_pred EEeCCCCee-eeeecCCCC-----CcceEEEEecCCCEEEEEeCCCcEEEEeCCCCe-----------------------
Q 001790 568 EWNESEGTI-KRTYAGFRK-----KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN----------------------- 618 (1012)
Q Consensus 568 lwd~~~~~~-~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~----------------------- 618 (1012)
+||+.+.++ +..+..... ..+.+++|-.|. .+++|+.+-.|++|.+....
T Consensus 270 ~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~ 348 (609)
T KOG4227|consen 270 YFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEK 348 (609)
T ss_pred EeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecc
Confidence 678776443 333331111 235567776554 48999999999999875311
Q ss_pred eEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEcc
Q 001790 619 ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1012)
Q Consensus 619 ~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~ 659 (1012)
.+..+ .+|..-++.+.|+|...+|++.+-.+.+++|..-
T Consensus 349 ~~~VL--rGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 349 ELTVL--RGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eeEEE--ecccccccceeecCCcceEeccchhhheeccccc
Confidence 11222 3455568999999999999999999999999753
No 184
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.76 E-value=1.6e-17 Score=155.16 Aligned_cols=283 Identities=17% Similarity=0.192 Sum_probs=195.4
Q ss_pred cCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceecc-CCCcceEEEEEccCCCE
Q 001790 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK-DVPISVSRVAWSPDGNY 420 (1012)
Q Consensus 342 ~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~spdg~~ 420 (1012)
+|.+.|+|+.|-.+++ |.+|...|.|++|++.+...... +. .|...|+.+.--|+ +.
T Consensus 12 p~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~-------------------~r~~g~~~it~lq~~p~-d~ 69 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPL-------------------IRLFGRLFITNLQSIPN-DS 69 (323)
T ss_pred cccchheehhhccchh--hhcccccceEEEEEeecCccchh-------------------hhhhccceeeceeecCC-cc
Confidence 5999999999999986 78899999999999988765432 33 36788999999887 56
Q ss_pred EEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCC-----CCce--EEEEEcCCC-cEEEEe-CCCcceeee-
Q 001790 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP-----NKLL--CVVTCGDDK-LIKVWE-LSGRKLFNF- 490 (1012)
Q Consensus 421 las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~-----~~~~--~l~s~~~d~-~v~vwd-~~~~~~~~~- 490 (1012)
|.+-+.|+.+.+|++..+..+. .|.-.++++-|.+- ++.. .++.-++.. .+.+-| -+...+...
T Consensus 70 l~tqgRd~~L~lw~ia~s~~i~------i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~d 143 (323)
T KOG0322|consen 70 LDTQGRDPLLILWTIAYSAFIS------IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIAD 143 (323)
T ss_pred hhhcCCCceEEEEEccCcceEE------EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccC
Confidence 7788899999999998765333 35555666666542 1110 111111100 011111 000011111
Q ss_pred ---cCCccCEEEEeccccCCc-eEEEEEecCCeEEEEEcCCCCceee----------ecCCCCcEEEEEEccCCCeEEEe
Q 001790 491 ---EGHEAPVYSICPHHKENI-QFIFSTAIDGKIKAWLYDTMGSRVD----------YDAPGHWCTTMLYSADGSRLFSC 556 (1012)
Q Consensus 491 ---~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~----------~~~~~~~v~~~~~s~~~~~l~~~ 556 (1012)
.+..+.+.+..+...... -++++|.++|.+.+||+.++..... ...|..+|.++.+.+.-..=+++
T Consensus 144 d~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisg 223 (323)
T KOG0322|consen 144 DSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISG 223 (323)
T ss_pred chhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCC
Confidence 123345666554333222 3567788899999999998744433 34466789999988765555555
Q ss_pred eecCCCCCcEEEEeCCC--Cee-eeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcc
Q 001790 557 GTSKDGDSFLVEWNESE--GTI-KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (1012)
Q Consensus 557 ~~~~~~~~~i~lwd~~~--~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1012)
+. +..+..|++.. +.+ ++.........+..+.+-||++.++++|.|++|++|+.++.+++..+..|. ..|+
T Consensus 224 ga----~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHs--agvn 297 (323)
T KOG0322|consen 224 GA----DDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHS--AGVN 297 (323)
T ss_pred Cc----cccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhh--ccee
Confidence 53 56677777653 222 222222223367889999999999999999999999999999999998776 4899
Q ss_pred eeEeecCCCEEEEEECCCcEEEEEc
Q 001790 634 RLRFSKEGNLLAVTTADNGFKILAN 658 (1012)
Q Consensus 634 ~v~~s~~g~~l~~~~~dg~i~iwd~ 658 (1012)
+++|+|+-..+|.++.|+.|.+|++
T Consensus 298 ~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 298 AVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999999986
No 185
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.76 E-value=2.6e-17 Score=153.80 Aligned_cols=308 Identities=14% Similarity=0.163 Sum_probs=197.4
Q ss_pred ceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcE
Q 001790 530 SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQI 609 (1012)
Q Consensus 530 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 609 (1012)
+...+..+.+.++++.|..+++ |+++. ..|.|.+|++.+......+.++....|+.+...|+ ..+.+-+.|+.+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~----~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L 79 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGL----SVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLL 79 (323)
T ss_pred CeeEeccccchheehhhccchh-hhccc----ccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceE
Confidence 3445567888899999988887 66665 58999999999999998888777668888888887 678888999999
Q ss_pred EEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCC-cEEEEEccCCceeeecccCCccccccCccceeeeccc
Q 001790 610 KFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN-GFKILANAIGLRSLRAVENPPFEALRTPIESVALKVS 688 (1012)
Q Consensus 610 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~ 688 (1012)
.+|++..+..+..-.. .++++.|.+-. +...+... ..-.++-+.... .+..+ .+.-..+..-++
T Consensus 80 ~lw~ia~s~~i~i~Si-----~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde------~h~~D--~g~~tqv~i~dd 144 (323)
T KOG0322|consen 80 ILWTIAYSAFISIHSI-----VVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDE------THKQD--GGDTTQVQIADD 144 (323)
T ss_pred EEEEccCcceEEEeee-----eccccccccce--eccCCCcchhheecCCcccch------hhhhc--cCccceeEccCc
Confidence 9999987665543332 23444443321 11111110 011111110000 00000 000000000000
Q ss_pred cccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceE
Q 001790 689 ASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVV 768 (1012)
Q Consensus 689 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~ 768 (1012)
. ..+..+.+.
T Consensus 145 ~----------------------------------------------------------------------~~~Klgsvm 154 (323)
T KOG0322|consen 145 S----------------------------------------------------------------------ERSKLGSVM 154 (323)
T ss_pred h----------------------------------------------------------------------hccccCcee
Confidence 0 011233344
Q ss_pred EEEEec-Cc--ceEEEeeccCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCE
Q 001790 769 RLLYTN-SA--VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSY 845 (1012)
Q Consensus 769 ~l~~s~-~g--~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 845 (1012)
+..+.. ++ -.+++|.++|.+.+||+..+.. +.++.....+...... |..+|.++.+.+.-..
T Consensus 155 c~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~-------------~~~~~~~~kv~~~~as--h~qpvlsldyas~~~r 219 (323)
T KOG0322|consen 155 CQDKDHACGSTFLLLAGYESGHVVIWDLSTGDK-------------IIQLPQSSKVESPNAS--HKQPVLSLDYASSCDR 219 (323)
T ss_pred eeeccccccceEEEEEeccCCeEEEEEccCCce-------------eeccccccccccchhh--ccCcceeeeechhhcC
Confidence 443222 12 2466677899999999876421 1111111111112223 8899999998765444
Q ss_pred EEEEc-CCcEEEEEcCC--CeE--EEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeEEecccCCCeEE
Q 001790 846 VMSAT-GGKISLFNMMT--FKV--MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITG 920 (1012)
Q Consensus 846 la~~s-dg~i~lwd~~~--~~~--~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~~~~h~~~V~~ 920 (1012)
=++|+ +..+..|++.. +.+ .....-....|..+.+-| |++++|++++|+.|+||+.++..++..++-|++.|++
T Consensus 220 Gisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~ 298 (323)
T KOG0322|consen 220 GISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNA 298 (323)
T ss_pred CcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeE
Confidence 45555 66788887753 222 222333345688899999 9999999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeC
Q 001790 921 LAFSTSLNILVSSGADAQLCVWSI 944 (1012)
Q Consensus 921 l~~spdg~~l~s~s~Dg~i~vwd~ 944 (1012)
++|+||..++|.+|.|++|.+|++
T Consensus 299 vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 299 VAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999986
No 186
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=2.3e-17 Score=160.15 Aligned_cols=292 Identities=12% Similarity=0.135 Sum_probs=194.5
Q ss_pred EEEEEcCCCcEEEEe-CCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeec--CCC-CcEE
Q 001790 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--APG-HWCT 542 (1012)
Q Consensus 467 ~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~--~~~-~~v~ 542 (1012)
.+|++-..|+|++|| .+|+.+..++++...++.+.|........+.+++.||+|++||++.......+. .+. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 677788899999999 889999999999999999998765455789999999999999999877655433 333 3667
Q ss_pred EEEEccCCCeEEEeeecCCCCCcEEEEeCCCCee-eeeecCCCCCcceEEEEecCC-CEEEEEeCCCcEEEEeCCCCee-
Q 001790 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI-KRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNI- 619 (1012)
Q Consensus 543 ~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~-~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~- 619 (1012)
+++....++.++++..-.+.+..|.+||++..+. ++.+...+...|++++|+|.. +.|++|+.||-|.+||++....
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 7777767778887765555678899999998776 666665555589999999965 7889999999999999976432
Q ss_pred ---EEEEecCCCCCCcceeEeecCC-CEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeecccccccccc
Q 001790 620 ---LTSTDAEGGLPNLPRLRFSKEG-NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSS 695 (1012)
Q Consensus 620 ---~~~~~~~~~~~~v~~v~~s~~g-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~ 695 (1012)
...+. +...|.++.|..++ +.+.+-+..++..+|++..+......-.........-...++ .+++-.
T Consensus 202 DaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~------dY~I~~ 272 (376)
T KOG1188|consen 202 DALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNC------DYVINE 272 (376)
T ss_pred hhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhh------hheeec
Confidence 22232 23368899999877 457777889999999998874322211110000000000000 000000
Q ss_pred CCCCCccccccCCCCCCccccCCCCCCCCCCCCccc-ccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEec
Q 001790 696 GTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTV-DDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTN 774 (1012)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 774 (1012)
. ...++...+. ++..++..++-+................ .+|..-|+++.|..
T Consensus 273 ~-------------------------~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~-g~~~eiVR~i~~~~ 326 (376)
T KOG1188|consen 273 H-------------------------SPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQ-GGHEEIVRDILFDV 326 (376)
T ss_pred c-------------------------cCCCcceEEEeccccCceeEEEeeecccccccCcccccc-CCcHHHHHHHhhhc
Confidence 0 0111222222 2223555554443211111112222221 33666688899999
Q ss_pred CcceEEEeeccCeeEeeec
Q 001790 775 SAVGLLALGSNGVQKLWKW 793 (1012)
Q Consensus 775 ~g~~l~~~~~dg~i~~w~~ 793 (1012)
.+..+.+||+||.+.+|..
T Consensus 327 ~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 327 KNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred ccceeeccCCCceEEEEec
Confidence 9999999999999999974
No 187
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=7.8e-16 Score=142.05 Aligned_cols=280 Identities=18% Similarity=0.243 Sum_probs=189.7
Q ss_pred ceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEE
Q 001790 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1012)
Q Consensus 346 ~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~ 425 (1012)
.|.+-++||.++ +|+.|..+|.|.+..+.+-..-.. .+..........+|+++|+.++|. .++|++|+
T Consensus 12 tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa---------~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 12 TVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSA---------EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHHHHhhCCcce-EEEEecCCCeEEEEEehhhhcccc---------CCCCCcceeeccccCCCeeeeeee--hhheeecc
Confidence 567778999999 799999999999999854211000 000000111247899999999998 55777775
Q ss_pred CCCeEEEEeecCCCc-c--eeee--eeeccc-----cCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCCc
Q 001790 426 TKHLIQLYSYAGSND-L--RQHS--QIDAHV-----GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (1012)
Q Consensus 426 ~d~~v~vwd~~~~~~-~--~~~~--~l~~h~-----~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~ 494 (1012)
||.|+-|....... . +... ...-|. -.|+++-..|.... ++.++.|+.++-|| .+|+..++++||+
T Consensus 80 -dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS--i~~AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 80 -DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS--ILFAGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred -CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc--EEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence 59999998764322 0 0000 011222 35889999987773 55555799999999 9999999999999
Q ss_pred cCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCC----------CCcEEEEEEccCCCeEEEeeecCCCCC
Q 001790 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP----------GHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1012)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~----------~~~v~~~~~s~~~~~l~~~~~~~~~~~ 564 (1012)
+.|.++.-... + ..+++|++||++|+||.++.++...+... +..|.+++. +..++++|+ ..
T Consensus 157 DYvH~vv~R~~-~-~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-----Gp 227 (325)
T KOG0649|consen 157 DYVHSVVGRNA-N-GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-----GP 227 (325)
T ss_pred ceeeeeeeccc-C-cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-----CC
Confidence 99999986322 2 46889999999999999998887755432 224555554 556888886 67
Q ss_pred cEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCC-CE
Q 001790 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG-NL 643 (1012)
Q Consensus 565 ~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g-~~ 643 (1012)
.+.+|.++..++...|.-.. .+..+.|.. ..+++++..+.|.-|.+. |.+....+...+ ..++..|+... ++
T Consensus 228 ~lslwhLrsse~t~vfpipa--~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~--~c~s~s~~~~p~k~ 300 (325)
T KOG0649|consen 228 KLSLWHLRSSESTCVFPIPA--RVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVEST--ACYSASWQTSPIKF 300 (325)
T ss_pred ceeEEeccCCCceEEEeccc--ceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCCcc--ceeeecccCCceEE
Confidence 89999999999888876542 466677754 578888888889999874 444444443322 34555554433 23
Q ss_pred EEEEECCCcEEEE
Q 001790 644 LAVTTADNGFKIL 656 (1012)
Q Consensus 644 l~~~~~dg~i~iw 656 (1012)
+-.++....+.|+
T Consensus 301 ~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 301 ISIAGFSNKLHIL 313 (325)
T ss_pred EEecccceeeeee
Confidence 3344444555544
No 188
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=2e-15 Score=161.34 Aligned_cols=496 Identities=14% Similarity=0.184 Sum_probs=294.6
Q ss_pred CcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCC----------CceEEEEEcCCC
Q 001790 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPN----------KLLCVVTCGDDK 475 (1012)
Q Consensus 406 ~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~----------~~~~l~s~~~d~ 475 (1012)
...-.++.|+|.| +||.|+.. .|.|-|..+-+.+. .+..|...|+.+.|.|.. ..+.+|++...|
T Consensus 15 ~sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred cccccccccCccc-eEEEecCc-eEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 3446678999866 77777654 58888888766555 677899999999998742 345788999999
Q ss_pred cEEEEe-CCCcceeeecCCccCEEEEeccccCCc--eEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEcc-CCC
Q 001790 476 LIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENI--QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA-DGS 551 (1012)
Q Consensus 476 ~v~vwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~--~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~~~ 551 (1012)
.|.+|| ..+..+..+..|.+++..++|.+..+. .+|++-....++.+|+.++++..+.+........++.+.| |.+
T Consensus 90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~r 169 (1062)
T KOG1912|consen 90 RIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSR 169 (1062)
T ss_pred cEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcc
Confidence 999999 888888899999999999999776543 4677777889999999999999998888777778888888 444
Q ss_pred eEEEeeecCCCCCcEEEEeCC-------CCeeeeeecCCCC----------------Cc--------ceEEEEecCCCEE
Q 001790 552 RLFSCGTSKDGDSFLVEWNES-------EGTIKRTYAGFRK----------------KS--------NGVVQFDTTQNHF 600 (1012)
Q Consensus 552 ~l~~~~~~~~~~~~i~lwd~~-------~~~~~~~~~~~~~----------------~~--------v~~~~~s~~~~~l 600 (1012)
.+...+. .|.+.+-+.- .|+..+.-..|.+ .. ....+|+|.-+.+
T Consensus 170 h~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~ 245 (1062)
T KOG1912|consen 170 HFCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNI 245 (1062)
T ss_pred eEEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhce
Confidence 4443332 4444443321 1122221111111 00 1125678877777
Q ss_pred EEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecC--CCEEEEEECCCcEEEEEccCCceeeecccCCccccccC
Q 001790 601 LAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE--GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRT 678 (1012)
Q Consensus 601 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~--g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 678 (1012)
+.......+.++|++-..++.....+.+ .+.-+.+-|+ ...|+....||.+.+|-...........
T Consensus 246 lfi~~prellv~dle~~~~l~vvpier~--~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~---------- 313 (1062)
T KOG1912|consen 246 LFITFPRELLVFDLEYECCLAVVPIERG--GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKP---------- 313 (1062)
T ss_pred EEEEeccceEEEcchhhceeEEEEeccC--CcceeEeccCCCcceEEEEecCCeEEEEEeeccCcccccc----------
Confidence 7777788999999999999988887765 3455666665 4578899999999999754422111110
Q ss_pred ccceeeeccccccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecC
Q 001790 679 PIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMP 758 (1012)
Q Consensus 679 ~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~ 758 (1012)
+..++.+ + ..++..+...
T Consensus 314 -~~~l~~d--------------------------------------------------------l-----~~Q~~~vr~m 331 (1062)
T KOG1912|consen 314 -NASLSMD--------------------------------------------------------L-----GEQVHVVRPM 331 (1062)
T ss_pred -chhhccc--------------------------------------------------------c-----ccceEEEeec
Confidence 0000000 0 0000000000
Q ss_pred CCCCCCCceEEEEEecC-cceEEEeeccCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEE
Q 001790 759 ESTDTSSKVVRLLYTNS-AVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 837 (1012)
Q Consensus 759 ~~~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 837 (1012)
..-.+...+..|. ...++..-++|.+.+|.+..+....++......-..-++....... -....-+
T Consensus 332 ----~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~---------v~k~~l~ 398 (1062)
T KOG1912|consen 332 ----EEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKL---------VGKTSLI 398 (1062)
T ss_pred ----hhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceee---------hhhcccc
Confidence 0111111122222 2234444455666666655433322221100000000000000000 0000011
Q ss_pred EEeeCCCEEEEEcCCc--EEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeEEecccC
Q 001790 838 ALSKNDSYVMSATGGK--ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ 915 (1012)
Q Consensus 838 ~~s~dg~~la~~sdg~--i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~~~~h~ 915 (1012)
.+|.||.. +.|. +++--+.... .+.....+.. ....- .++|.|...|+|.++|+.++...+.+..|+
T Consensus 399 ~LS~dg~h----~sGs~~~~~~p~p~~t--~~~~~p~~n~-~~~~~----pLvAvGT~sGTV~vvdvst~~v~~~fsvht 467 (1062)
T KOG1912|consen 399 SLSDDGSH----SSGSTCVRMRPMPELT--KVENDPGGNT-PAGTV----PLVAVGTNSGTVDVVDVSTNAVAASFSVHT 467 (1062)
T ss_pred chhhcCCC----CCCceeeecccCcccc--eeecCCCCCc-cceee----eeEEeecCCceEEEEEecchhhhhhhcccc
Confidence 12222200 0111 1111111111 1111111111 11222 378999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCEEEE---------EeCCCcEEEEeCCCCCccccEEEecCCCCCCCCceEEEEcCCCCEEEEE-eCCe
Q 001790 916 KRITGLAFSTSLNILVS---------SGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQ 985 (1012)
Q Consensus 916 ~~V~~l~~spdg~~l~s---------~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~-~d~~ 985 (1012)
+.|.++.|-...+++-. ++.-+.+.|-|+.+|.... +....+....+|..+..|.-|+||++. .+.-
T Consensus 468 ~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~---fR~l~~~despI~~irvS~~~~yLai~Fr~~p 544 (1062)
T KOG1912|consen 468 SLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKR---FRGLQKPDESPIRAIRVSSSGRYLAILFRREP 544 (1062)
T ss_pred cceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccc---cccCCCCCcCcceeeeecccCceEEEEecccc
Confidence 99999999866544322 2223457889999987542 222233333899999999999999998 7899
Q ss_pred EEEEECCCceEEEeecC--CCeeEEEec
Q 001790 986 LAIYDASKMERIRQVGS--PHICSIIFC 1011 (1012)
Q Consensus 986 i~vwd~~~~~~~~~~~~--~~i~~~~f~ 1011 (1012)
+.+||+.+..+++...- .-|..+.|+
T Consensus 545 lEiwd~kt~~~lr~mS~a~P~it~leWs 572 (1062)
T KOG1912|consen 545 LEIWDLKTLRMLRLMSLALPLITVLEWS 572 (1062)
T ss_pred hHHHhhccchHHHHHhhcCCcEEEEeec
Confidence 99999987665544322 447777776
No 189
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.74 E-value=4.3e-16 Score=171.13 Aligned_cols=269 Identities=15% Similarity=0.204 Sum_probs=202.4
Q ss_pred cccCCCCCccceEeecCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCC
Q 001790 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1012)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1012)
+|++.+. ....+.+.-..+|+|++|+|....++|.|+.+|.|.+||+..+.......+ ......|.
T Consensus 226 vW~~~~p-~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~l-------------s~~~~sh~ 291 (555)
T KOG1587|consen 226 VWSLKNP-NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGL-------------SALEVSHS 291 (555)
T ss_pred EEecCCC-CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccc-------------ccccccCC
Confidence 8888876 778888888999999999999988999999999999999988765211111 11245699
Q ss_pred cceEEEEEccCC--CEEEEEECCCeEEEEeecCCCcceeeeeee---------ccccCeEEEEEeCCCCceEEEEEcCCC
Q 001790 407 ISVSRVAWSPDG--NYVGVAFTKHLIQLYSYAGSNDLRQHSQID---------AHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1012)
Q Consensus 407 ~~V~~v~~spdg--~~las~~~d~~v~vwd~~~~~~~~~~~~l~---------~h~~~v~~l~~s~~~~~~~l~s~~~d~ 475 (1012)
.+|+.+.|-.+. .-+++++.||.|..|+++.-........+. .-...+++++|.+...+ .++.|+++|
T Consensus 292 ~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G 370 (555)
T KOG1587|consen 292 EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEG 370 (555)
T ss_pred cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCc
Confidence 999999997754 449999999999999877533311111111 12346899999998776 788999999
Q ss_pred cEEEEe---CCCcc------eeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcC-CCCceeeecCCCCcEEEEE
Q 001790 476 LIKVWE---LSGRK------LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD-TMGSRVDYDAPGHWCTTML 545 (1012)
Q Consensus 476 ~v~vwd---~~~~~------~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~-~~~~~~~~~~~~~~v~~~~ 545 (1012)
.|..-+ .+-.. +..+..|.++|+++.++|-.. ..+++++ |.++++|.-. ...+...+..+...+++++
T Consensus 371 ~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~va 448 (555)
T KOG1587|consen 371 KVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVA 448 (555)
T ss_pred EEEEEeccCCcccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeE
Confidence 998744 22222 345667889999999887654 3455555 9999999887 6666677777777899999
Q ss_pred EccCCCeEEEeeecCCCCCcEEEEeCCCCe--eeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 001790 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGT--IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1012)
Q Consensus 546 ~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 616 (1012)
|||-...++++.. .+|.+.+||+.... ++.+.... ....+.+.+++.|+.+++|...|.+.+|++..
T Consensus 449 WSptrpavF~~~d---~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 449 WSPTRPAVFATVD---GDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EcCcCceEEEEEc---CCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 9998887777663 69999999987543 33333333 33567788999999999999999999999864
No 190
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=2.4e-17 Score=170.64 Aligned_cols=251 Identities=14% Similarity=0.175 Sum_probs=189.1
Q ss_pred eccCCCcceEEEEEccCCCEEEEEECCCeEEEEeec-----CCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCC
Q 001790 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYA-----GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1012)
Q Consensus 401 ~~~~h~~~V~~v~~spdg~~las~~~d~~v~vwd~~-----~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~ 475 (1012)
.+..|.+.|+.++|.|....|++|+.||++++|+++ ....+..+.++.+|.++|.|++..++++ .+++|+.||
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence 466799999999999999999999999999999993 3345667778999999999999999999 899999999
Q ss_pred cEEEEe-C------CC----cceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCC--CCcEE
Q 001790 476 LIKVWE-L------SG----RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--GHWCT 542 (1012)
Q Consensus 476 ~v~vwd-~------~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~--~~~v~ 542 (1012)
+|+.|+ . +. .....+.||.+.|+.++++... ..|++++.||+++.|+...... ..+... .+...
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 999994 1 11 2335678999999999998866 4699999999999998765544 222222 22334
Q ss_pred EEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCC------CcceEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 001790 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1012)
Q Consensus 543 ~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 616 (1012)
++.+-.....+..++. .-+.-.+++...+..+..+..... ..+..+..+|.....+++..|+.|+++|..+
T Consensus 444 svd~~ss~~a~~~~s~---~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~ 520 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASF---RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT 520 (577)
T ss_pred eEeeccchhHhhhhhc---ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccc
Confidence 4544333211222111 122233344444444444432211 2466688899999999999999999999999
Q ss_pred CeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCC
Q 001790 617 VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1012)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~ 661 (1012)
++++.....+- ..++++++.|+|.+|++++.|+.+++|.+...
T Consensus 521 ~~~l~s~~a~~--~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 521 GKILHSMVAHK--DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred cccchheeecc--ceecceeecCCCceEEeecCCceeehhhccch
Confidence 99988777554 47999999999999999999999999988654
No 191
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=2.6e-14 Score=151.30 Aligned_cols=550 Identities=11% Similarity=0.124 Sum_probs=337.4
Q ss_pred cCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE
Q 001790 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1012)
Q Consensus 342 ~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 421 (1012)
+......|++|+.... ++|+|+.||.+++-.+.+...-. +.-.+++.+.......+.||.+.|.-+.|+.+.+.|
T Consensus 12 PnnvkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~----~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKL 86 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDL----NKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKL 86 (1189)
T ss_pred CCCceEEEEEEcccCC-eEEeccccceeEEEEccccCCcc----cccccccccccchhhhhccCcceEEEEEeccccccc
Confidence 3455789999999888 79999999999999987654321 111223333444556799999999999999999999
Q ss_pred EEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEeCCCccee--eecCCccCEEE
Q 001790 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLF--NFEGHEAPVYS 499 (1012)
Q Consensus 422 as~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd~~~~~~~--~~~~h~~~v~~ 499 (1012)
-+...+|.|.||-+-.|.-.... .-......|.+++|..||+ .++....||.|.+=..+|..+. .+++. ....
T Consensus 87 TtSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~h 161 (1189)
T KOG2041|consen 87 TTSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAH 161 (1189)
T ss_pred cccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchh--eccc
Confidence 99999999999999887654432 1234567799999999999 6777888998877666665552 22221 2335
Q ss_pred EeccccCCceEEEEEecCCeEEEEEcCCCCce-------ee----ecCCCCcEEEEEEc--------cCCCeEEEeeecC
Q 001790 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR-------VD----YDAPGHWCTTMLYS--------ADGSRLFSCGTSK 560 (1012)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~-------~~----~~~~~~~v~~~~~s--------~~~~~l~~~~~~~ 560 (1012)
+.|++ |...++.+-.+|.++++|.+..-.. .. +...+..+..+.|. ||...++++.
T Consensus 162 v~ws~--D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy--- 236 (1189)
T KOG2041|consen 162 VLWSE--DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY--- 236 (1189)
T ss_pred eeecc--cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE---
Confidence 56655 5567778888899999986532110 11 11122235555553 5777888887
Q ss_pred CCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCC---------CcEEEEeCCCCeeEEEEecCCCCCC
Q 001790 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED---------SQIKFWDMDNVNILTSTDAEGGLPN 631 (1012)
Q Consensus 561 ~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1012)
.+|.+.+..-.+......+... -.+....|+++|..|+++|.+ +.|.+|. .-|+.+..++.++. .
T Consensus 237 -~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~--~ 310 (1189)
T KOG2041|consen 237 -ANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGS--C 310 (1189)
T ss_pred -cCceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCc--e
Confidence 3667766543333222222211 246668999999999998853 2455554 35777888887765 7
Q ss_pred cceeEeecCCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeeccccccccccCCCCCccccccCCCCC
Q 001790 632 LPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRP 711 (1012)
Q Consensus 632 v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 711 (1012)
|++++|-..|-.+|.+- |+.|.+=+++.....-. +. ..+.+-..+.-+
T Consensus 311 It~lsWEg~gLriA~Av-dsfiyfanIRP~ykWgy-~e-----------~TvVy~y~~~e~------------------- 358 (1189)
T KOG2041|consen 311 ITGLSWEGTGLRIAIAV-DSFIYFANIRPEYKWGY-IE-----------ETVVYVYQKEEL------------------- 358 (1189)
T ss_pred eeeeEEcCCceEEEEEe-cceEEEEeecccceEEE-ee-----------eEEEEEEccCCC-------------------
Confidence 99999988887777664 66887766654311100 00 001111110000
Q ss_pred CccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeeccCeeEee
Q 001790 712 SPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLW 791 (1012)
Q Consensus 712 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w 791 (1012)
-...|.+||..+....- . .-....++++..+--.|+.-..+|.+.-+
T Consensus 359 ----------------------p~y~i~Fwdtk~nek~v--K---------~V~~~~~~a~~~ehCvL~~~~d~~~i~e~ 405 (1189)
T KOG2041|consen 359 ----------------------PQYGIMFWDTKTNEKTV--K---------TVTHFENMAFYREHCVLINRQDDGVIPEY 405 (1189)
T ss_pred ----------------------cceEEEEEecccChhhh--h---------hhcceeehheecccEEEEeccccCCCcch
Confidence 00234556654311100 0 11123455666655555555556665544
Q ss_pred eccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEEEcCCcEEEEEcCCCeE-------
Q 001790 792 KWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKV------- 864 (1012)
Q Consensus 792 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~sdg~i~lwd~~~~~~------- 864 (1012)
+- ....+ ++|...-.-.+...+.. .-..|.-.-..-++..++.++...+.+|.....+.
T Consensus 406 s~----le~~~--------~~~~l~LCNSIGT~lD~--kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~ 471 (1189)
T KOG2041|consen 406 ST----LENRS--------RVYFLQLCNSIGTSLDY--KYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGV 471 (1189)
T ss_pred hh----hhccc--------ceEEEeeecccCCcCCC--CcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhh
Confidence 10 00000 01110000000000100 11112222233467788888877788885432211
Q ss_pred -------------------------EEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeEEecccCCCeE
Q 001790 865 -------------------------MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRIT 919 (1012)
Q Consensus 865 -------------------------~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~~~~h~~~V~ 919 (1012)
..++.|..++|.+++.+. ++|.++-..|.|.-|.+.+......+. -...|.
T Consensus 472 k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~sd---k~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y 547 (1189)
T KOG2041|consen 472 KIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCISD---KFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIY 547 (1189)
T ss_pred hhcccccccCCCCccchhhceeeccceeeccCCCcceeeeecc---eEEEEEeccCceEEEEecceeeeeccc-cCchhe
Confidence 133445567788888764 788899999999999999987777655 446789
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCC---CCCccccEEEecCCCCCCCCceEEEEcCCCCEEEEEe-CCeEEEEECCCce
Q 001790 920 GLAFSTSLNILVSSGADAQLCVWSID---TWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKME 995 (1012)
Q Consensus 920 ~l~~spdg~~l~s~s~Dg~i~vwd~~---~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~-d~~i~vwd~~~~~ 995 (1012)
.++.+-+...+|...--|.+-+.|++ +|..+.. +.... ...|+.+.|..|+..|++-. ...+.|++-.+.+
T Consensus 548 ~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~----~~~~e-rrDVWd~~Wa~dNp~llAlmeKtrmyifrgndpe 622 (1189)
T KOG2041|consen 548 SIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKL----IYTSE-RRDVWDYEWAQDNPNLLALMEKTRMYIFRGNDPE 622 (1189)
T ss_pred eEeeccCcchhhhhhhhceeeeeecccccCcceeee----eehhh-hhhhhhhhhccCCchHHhhhhhceEEEecCcCcc
Confidence 99999999999998888999999887 2332221 11111 26789999999998888874 4568888876655
Q ss_pred EEEee
Q 001790 996 RIRQV 1000 (1012)
Q Consensus 996 ~~~~~ 1000 (1012)
.-.+.
T Consensus 623 Ep~s~ 627 (1189)
T KOG2041|consen 623 EPSSV 627 (1189)
T ss_pred ccccc
Confidence 44443
No 192
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=2.4e-16 Score=153.11 Aligned_cols=273 Identities=12% Similarity=0.165 Sum_probs=192.4
Q ss_pred EEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc--CCCEEEEEECCCeEEEEeec
Q 001790 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGNYVGVAFTKHLIQLYSYA 436 (1012)
Q Consensus 359 llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~~las~~~d~~v~vwd~~ 436 (1012)
.+|++.+.|+|+|||..+++.+.. +++|...+..++|.. ....+.+|+.||+|++||+.
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R 102 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR 102 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence 588888899999999999887643 778888899999987 46788899999999999999
Q ss_pred CCCcceeeeeeeccc-cCeEEEEEeCCCCceEEEEEc----CCCcEEEEe-CCCcc-eeee-cCCccCEEEEeccccCCc
Q 001790 437 GSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCG----DDKLIKVWE-LSGRK-LFNF-EGHEAPVYSICPHHKENI 508 (1012)
Q Consensus 437 ~~~~~~~~~~l~~h~-~~v~~l~~s~~~~~~~l~s~~----~d~~v~vwd-~~~~~-~~~~-~~h~~~v~~~~~~~~~~~ 508 (1012)
+......+ .+..|. .+..+++-.-.++ .+++|. .|-.|.+|| ...+. +..+ ..|.+.|+++.|+|+. .
T Consensus 103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~-p 178 (376)
T KOG1188|consen 103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSD-P 178 (376)
T ss_pred cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCC-C
Confidence 87655433 244555 5667777665666 677665 356799999 44443 5544 5799999999999985 4
Q ss_pred eEEEEEecCCeEEEEEcCCCCce---eeecCCCCcEEEEEEccCC-CeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCC
Q 001790 509 QFIFSTAIDGKIKAWLYDTMGSR---VDYDAPGHWCTTMLYSADG-SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584 (1012)
Q Consensus 509 ~~l~s~~~dg~i~~wd~~~~~~~---~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~ 584 (1012)
++|++|+.||.|.+||+...... .....+...|..+.|..++ +.|.+.+ ......+|+++.+.....+....
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clT----H~Etf~~~ele~~~~~~~~~~~~ 254 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLT----HMETFAIYELEDGSEETWLENPD 254 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEE----ccCceeEEEccCCChhhcccCcc
Confidence 79999999999999998765332 2333456679999999888 3455555 47889999999887665554321
Q ss_pred CC---------cceEE-EEec-CCCEEEEEeC-CCcEEEEeCC---CCee---EEEEecCCCCCCcceeEeecCCCEEEE
Q 001790 585 KK---------SNGVV-QFDT-TQNHFLAVGE-DSQIKFWDMD---NVNI---LTSTDAEGGLPNLPRLRFSKEGNLLAV 646 (1012)
Q Consensus 585 ~~---------~v~~~-~~s~-~~~~l~~~~~-dg~i~iwd~~---~~~~---~~~~~~~~~~~~v~~v~~s~~g~~l~~ 646 (1012)
-. .-+.+ +.+| +...++.++. -|...++-+. ++.. +..+.. ++..-|.++.|...+..+.+
T Consensus 255 ~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l~T 333 (376)
T KOG1188|consen 255 VSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVLYT 333 (376)
T ss_pred chhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccceeec
Confidence 10 00112 1223 3345555443 5555555443 2322 223332 34446888999989999999
Q ss_pred EECCCcEEEEEcc
Q 001790 647 TTADNGFKILANA 659 (1012)
Q Consensus 647 ~~~dg~i~iwd~~ 659 (1012)
|+.||.+.+|...
T Consensus 334 GGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 334 GGEDGLLQAWKVE 346 (376)
T ss_pred cCCCceEEEEecC
Confidence 9999999999863
No 193
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.72 E-value=2e-15 Score=143.20 Aligned_cols=287 Identities=14% Similarity=0.261 Sum_probs=206.6
Q ss_pred ccceEeecCCCceEEEEEe--cCCCcEEEEecC----CCeEEEEEcc--CCceecccccccccccccCccccceeccCCC
Q 001790 335 RTVAVSLHQGSTVISMDFH--PSHQTLLLVGSS----NGEITLWELA--MRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1012)
Q Consensus 335 ~~~~~~~~h~~~V~~~~~s--pdg~~llasg~~----dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1012)
+..+.+..-.-.+.++.|| |+.+..||.|+- .+.|.|-.+. +++.+... -..|.
T Consensus 35 ~~eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a------------------~fd~~ 96 (364)
T KOG0290|consen 35 RKEIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDA------------------NFDHP 96 (364)
T ss_pred cceEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccC------------------CCCCC
Confidence 3345556666789999999 566667999873 3556665543 33333211 13488
Q ss_pred cceEEEEEccCC-----CEEEEEECCCeEEEEeecCCCc-ceeeee-----eeccccCeEEEEEeCCCCceEEEEEcCCC
Q 001790 407 ISVSRVAWSPDG-----NYVGVAFTKHLIQLYSYAGSND-LRQHSQ-----IDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1012)
Q Consensus 407 ~~V~~v~~spdg-----~~las~~~d~~v~vwd~~~~~~-~~~~~~-----l~~h~~~v~~l~~s~~~~~~~l~s~~~d~ 475 (1012)
-+++.+.|.|+. ++||+++ ..+|+|.+...+. +..... -..+.+++++..|+.-..+ ++.+++-|-
T Consensus 97 YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDT 173 (364)
T KOG0290|consen 97 YPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDT 173 (364)
T ss_pred CCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccC
Confidence 999999999987 3666653 3599999874221 111111 2246779999999987666 899999999
Q ss_pred cEEEEe-CCCc---ceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceee-ecCC--CCcEEEEEEcc
Q 001790 476 LIKVWE-LSGR---KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-YDAP--GHWCTTMLYSA 548 (1012)
Q Consensus 476 ~v~vwd-~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~-~~~~--~~~v~~~~~s~ 548 (1012)
+..||| .+|. ....+-.|...|..++|.. +.-+.+++.+.||.+|+||++....... +... ..+...++|++
T Consensus 174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnk 252 (364)
T KOG0290|consen 174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNK 252 (364)
T ss_pred eEEEEEEeeccccceeeEEEecCcceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCc
Confidence 999999 6553 3566788999999999976 3447899999999999999998665432 3322 34778888887
Q ss_pred C-CCeEEEeeecCCCCCcEEEEeCCCC-eeeeeecCCCCCcceEEEEecCC-CEEEEEeCCCcEEEEeCCCCee------
Q 001790 549 D-GSRLFSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNI------ 619 (1012)
Q Consensus 549 ~-~~~l~~~~~~~~~~~~i~lwd~~~~-~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~------ 619 (1012)
. -+++++... +...|.+.|++.. ..+..+.+|.. .|+.++|.|.. .+|+++|.|..+.+||+...-.
T Consensus 253 qDpnymATf~~---dS~~V~iLDiR~P~tpva~L~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP 328 (364)
T KOG0290|consen 253 QDPNYMATFAM---DSNKVVILDIRVPCTPVARLRNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP 328 (364)
T ss_pred CCchHHhhhhc---CCceEEEEEecCCCcceehhhcCcc-cccceEecCCCCceeeecCCcceEEEEecccccccCCCCc
Confidence 4 456776654 4667999999874 56788889887 89999999965 7899999999999999975322
Q ss_pred EEEEecCCCCCCcceeEeec-CCCEEEEEECC
Q 001790 620 LTSTDAEGGLPNLPRLRFSK-EGNLLAVTTAD 650 (1012)
Q Consensus 620 ~~~~~~~~~~~~v~~v~~s~-~g~~l~~~~~d 650 (1012)
+..+. ....|+.+.|++ .+.+++.+...
T Consensus 329 ilay~---a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 329 ILAYT---AGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred hhhhh---ccceeeeeeecccCCCEEEEEecC
Confidence 22222 233799999997 56788777653
No 194
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.72 E-value=1.1e-14 Score=156.64 Aligned_cols=320 Identities=11% Similarity=0.137 Sum_probs=202.9
Q ss_pred CCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCC
Q 001790 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641 (1012)
Q Consensus 562 ~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g 641 (1012)
+++.|.+.|..+.+.+.++..... ....+.++||++++++++.||.|.++|+.+.+.+..+.... ...++++|+||
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~~~~-~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~---~~~~i~~s~DG 89 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPTGGA-PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG---NPRGIAVSPDG 89 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE-STT-EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS---EEEEEEE--TT
T ss_pred CCCEEEEEECCCCeEEEEEcCCCC-ceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC---CcceEEEcCCC
Confidence 588999999999999999986543 34457899999999999999999999999999999987644 35889999999
Q ss_pred CEEEEEE-CCCcEEEEEccCCceeeecccCCccccccCccceeeeccccccccccCCCCCccccccCCCCCCccccCCCC
Q 001790 642 NLLAVTT-ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDP 720 (1012)
Q Consensus 642 ~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1012)
++++++. .++.+.++|..+.+ ..+.+......
T Consensus 90 ~~~~v~n~~~~~v~v~D~~tle-~v~~I~~~~~~---------------------------------------------- 122 (369)
T PF02239_consen 90 KYVYVANYEPGTVSVIDAETLE-PVKTIPTGGMP---------------------------------------------- 122 (369)
T ss_dssp TEEEEEEEETTEEEEEETTT---EEEEEE--EE-----------------------------------------------
T ss_pred CEEEEEecCCCceeEecccccc-ceeeccccccc----------------------------------------------
Confidence 9998776 58999999988763 22222110000
Q ss_pred CCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEe-eccCeeEeeeccccccC
Q 001790 721 TSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLAL-GSNGVQKLWKWHRNEQN 799 (1012)
Q Consensus 721 ~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~-~~dg~i~~w~~~~~~~~ 799 (1012)
. .....++.++..++....++.. -+.+.|.+.|+....
T Consensus 123 ------------------------------------~---~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~-- 161 (369)
T PF02239_consen 123 ------------------------------------V---DGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK-- 161 (369)
T ss_dssp ------------------------------------T---TTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS--
T ss_pred ------------------------------------c---cccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc--
Confidence 0 0023466777778887755544 444777666543211
Q ss_pred CCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEEEc--CCcEEEEEcCCCeEEEEEcC----CCC
Q 001790 800 PSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMS----PPP 873 (1012)
Q Consensus 800 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s--dg~i~lwd~~~~~~~~~~~~----~~~ 873 (1012)
.+....+. .........|+|++++++++. ++.|.++|.++++.+..+.. |..
T Consensus 162 -------------------~~~~~~i~---~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~ 219 (369)
T PF02239_consen 162 -------------------NLKVTTIK---VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPG 219 (369)
T ss_dssp -------------------CEEEEEEE-----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEET
T ss_pred -------------------ccceeeec---ccccccccccCcccceeeecccccceeEEEeeccceEEEEeecccccccc
Confidence 01111111 344566789999999987765 67899999999988776542 333
Q ss_pred CeeEEEEecC---------CCcEEEEEeCCCeEEEEEccCCeEeEEecccCCCeEEEEEcCCCCEEEEE----eCCCcEE
Q 001790 874 ASTFLAFHPQ---------DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSS----GADAQLC 940 (1012)
Q Consensus 874 ~i~~l~~sp~---------d~~~las~~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~----s~Dg~i~ 940 (1012)
+...+ .+|. .+...++.-....+.+||..+.+.++++....++ ..+.-+|+++++... ...+.|.
T Consensus 220 ~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~ 297 (369)
T PF02239_consen 220 PGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQ 297 (369)
T ss_dssp TEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EE
T ss_pred ccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEE
Confidence 33322 1221 2222222233345667899999999999877666 778889999999987 4458999
Q ss_pred EEeCCCCCccccEEEecCCCCCCCCceEEEEcCCCCEEEEE---eCCeEEEEECCCceEEEeecC
Q 001790 941 VWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV---HETQLAIYDASKMERIRQVGS 1002 (1012)
Q Consensus 941 vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~---~d~~i~vwd~~~~~~~~~~~~ 1002 (1012)
++|.++.+....+ ....+ ..+..+.|++||+++.++ .++.|.|||..+.+.+..+..
T Consensus 298 viD~~tl~~~~~i--~~~~~---~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~~ 357 (369)
T PF02239_consen 298 VIDKKTLKVVKTI--TPGPG---KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIPV 357 (369)
T ss_dssp EEECCGTEEEE-H--HHHHT-----EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE-
T ss_pred EEECcCcceeEEE--eccCC---CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEEe
Confidence 9999997543222 11111 247899999999988886 345899999999999999874
No 195
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.72 E-value=2.8e-15 Score=168.55 Aligned_cols=254 Identities=11% Similarity=0.051 Sum_probs=181.1
Q ss_pred ccCCCcceEEEEEccCC-CEEEEEECCCeEEEEeecCC----CcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCc
Q 001790 402 FKDVPISVSRVAWSPDG-NYVGVAFTKHLIQLYSYAGS----NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (1012)
Q Consensus 402 ~~~h~~~V~~v~~spdg-~~las~~~d~~v~vwd~~~~----~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~ 476 (1012)
+..|...|..++.++.. .++++|+.||+|++||...- ...+...++..-..++.++.+.+.++ .+|.++.||.
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence 67789999999888754 99999999999999998632 22233334544577899999999999 7899999999
Q ss_pred EEEEeCCC---cc-----eeeecC-CccCEEEE-eccccCCce-EEEEEecCCeEEEEEcCCCCceeee--cCCCCcEEE
Q 001790 477 IKVWELSG---RK-----LFNFEG-HEAPVYSI-CPHHKENIQ-FIFSTAIDGKIKAWLYDTMGSRVDY--DAPGHWCTT 543 (1012)
Q Consensus 477 v~vwd~~~---~~-----~~~~~~-h~~~v~~~-~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~--~~~~~~v~~ 543 (1012)
|++.+.+. +. .+.... ..+.+.++ ++... .+. .++.+...+.|..||.+.....+.. ....+.|++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~-~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTS 1200 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAI-VQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTS 1200 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeeccccc-ccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeE
Confidence 99998222 11 111111 22334444 33322 333 7888888999999999887666544 445668999
Q ss_pred EEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCC---CEEEEEe--CCCcEEEEeCCCCe
Q 001790 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ---NHFLAVG--EDSQIKFWDMDNVN 618 (1012)
Q Consensus 544 ~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~--~dg~i~iwd~~~~~ 618 (1012)
++.+|-+.+++.|.. .|.+.+||++=+.++..........+..+..+|-. ...++++ ..+.|.+|++.+|.
T Consensus 1201 i~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1201 IVIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred EEecCCceEEEEecC----CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 999999999999984 88999999999988887775555577777776643 4555544 57899999999987
Q ss_pred eEEEEecCCCC---------------C--CcceeEeecCCCEEEEEECCCcEEEEEccCCc
Q 001790 619 ILTSTDAEGGL---------------P--NLPRLRFSKEGNLLAVTTADNGFKILANAIGL 662 (1012)
Q Consensus 619 ~~~~~~~~~~~---------------~--~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~ 662 (1012)
....+-..... . ......+...+..+.+|+.|..||.||.....
T Consensus 1277 ~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1277 RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 76665433110 0 11122233345688899999999999987753
No 196
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.71 E-value=2.3e-15 Score=165.44 Aligned_cols=251 Identities=16% Similarity=0.152 Sum_probs=183.8
Q ss_pred CCcceEEEEEcc-CCCEEEEEECCCeEEEEeecCCCcc--ee-eeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEE
Q 001790 405 VPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDL--RQ-HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1012)
Q Consensus 405 h~~~V~~v~~sp-dg~~las~~~d~~v~vwd~~~~~~~--~~-~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vw 480 (1012)
-...|.|++|+| +..++|.|..+|.|.+||+..+... .. ......|..+++.+.|..+-.+.-|++++.||.|+.|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 467899999999 7788899999999999999987652 11 1123478999999999876553358999999999999
Q ss_pred eCCC--cce-----eeec------CCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCc--------eeeecCCCC
Q 001790 481 ELSG--RKL-----FNFE------GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS--------RVDYDAPGH 539 (1012)
Q Consensus 481 d~~~--~~~-----~~~~------~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~--------~~~~~~~~~ 539 (1012)
+.+. .+. .... .-...++++.|.+.. -..++.|+++|.|.--+...... ...+..|.+
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~-p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD-PNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCC-CceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 8221 111 1111 122457888887764 46788999999997733222211 224566788
Q ss_pred cEEEEEEccCCCeEEEeeecCCCCCcEEEEeCC-CCeeeeeecCCCCCcceEEEEecCCCE-EEEEeCCCcEEEEeCCCC
Q 001790 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-EGTIKRTYAGFRKKSNGVVQFDTTQNH-FLAVGEDSQIKFWDMDNV 617 (1012)
Q Consensus 540 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~iwd~~~~ 617 (1012)
+|.++.++|-+..++..+ +|.++++|... ...++..+..+.. .++.++|||.... |+++..||.|.+||+...
T Consensus 400 ~v~~v~~nPF~~k~fls~----gDW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSV----GDWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred ceEeeecCCCccceeeee----ccceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 999999999888776665 49999999987 5666666666655 6999999998754 555667999999999765
Q ss_pred eeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCC
Q 001790 618 NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1012)
Q Consensus 618 ~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~ 661 (1012)
.........-.....+.+.|+++|+.|++|...|.+.+|++...
T Consensus 475 ~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 475 DEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 44333322222446678889999999999999999999998754
No 197
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=9.4e-16 Score=169.40 Aligned_cols=305 Identities=18% Similarity=0.328 Sum_probs=210.2
Q ss_pred cCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCC---ccCEEEEeccccCCceEEEEEecCCeEEEEEcCC
Q 001790 452 GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH---EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (1012)
Q Consensus 452 ~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h---~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~ 527 (1012)
.+-..+.|+|-.. .++++.....|+||| ..++.+..|..+ ...|+.+.+....|..++++++.||.|++|+--.
T Consensus 1065 ~~pk~~~~hpf~p--~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEP--QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred CCCceeeecCCCc--eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 3556678888877 788888778999999 889888877654 3568888887777778999999999999995321
Q ss_pred CCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCC
Q 001790 528 MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS 607 (1012)
Q Consensus 528 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 607 (1012)
.. | ....|+++- ..-++. ..+..+ .-..+.|-....+|+++|+-.
T Consensus 1143 ~~----------------~--~~~eLVTaw------------~~Ls~~----~~~~r~-~~~v~dWqQ~~G~Ll~tGd~r 1187 (1387)
T KOG1517|consen 1143 DK----------------W--KKPELVTAW------------SSLSDQ----LPGARG-TGLVVDWQQQSGHLLVTGDVR 1187 (1387)
T ss_pred cc----------------c--CCceeEEee------------cccccc----CccCCC-CCeeeehhhhCCeEEecCCee
Confidence 10 0 112333332 111111 111111 113356666677888888888
Q ss_pred cEEEEeCCCCeeEEEEecCCCCCCcceeEeec-CCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeec
Q 001790 608 QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALK 686 (1012)
Q Consensus 608 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s 686 (1012)
.|+|||.........+..... ..|+++.-+. .|+.+++|..||.|++||.+....
T Consensus 1188 ~IRIWDa~~E~~~~diP~~s~-t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~----------------------- 1243 (1387)
T KOG1517|consen 1188 SIRIWDAHKEQVVADIPYGSS-TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP----------------------- 1243 (1387)
T ss_pred EEEEEecccceeEeecccCCC-ccceeecccccCCceEEEeecCCceEEeecccCCc-----------------------
Confidence 999999999888888776543 3566665543 579999999999999999754311
Q ss_pred cccccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCc
Q 001790 687 VSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSK 766 (1012)
Q Consensus 687 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (1012)
|..|.+|.- |...
T Consensus 1244 ------------------------------------------------ds~v~~~R~-------------------h~~~ 1256 (1387)
T KOG1517|consen 1244 ------------------------------------------------DSLVCVYRE-------------------HNDV 1256 (1387)
T ss_pred ------------------------------------------------cccceeecc-------------------cCCc
Confidence 011222221 4444
Q ss_pred --eEEEEEecCcce-EEEeeccCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCC
Q 001790 767 --VVRLLYTNSAVG-LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKND 843 (1012)
Q Consensus 767 --i~~l~~s~~g~~-l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 843 (1012)
|..+.+.+.|-. |++++.+|.|++||+........-. .+..|+ ..+..+++.++++.
T Consensus 1257 ~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~-----iv~~~~---------------yGs~lTal~VH~ha 1316 (1387)
T KOG1517|consen 1257 EPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT-----IVAHWE---------------YGSALTALTVHEHA 1316 (1387)
T ss_pred ccceeEEeecCCCcceeeeccCCeEEEEecccCcccccce-----eeeccc---------------cCccceeeeeccCC
Confidence 888888887655 9999999999999986531100000 000010 23368999999999
Q ss_pred CEEEEEcCCcEEEEEcCCCeEEEEEcC-------CCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCe
Q 001790 844 SYVMSATGGKISLFNMMTFKVMTTFMS-------PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE 906 (1012)
Q Consensus 844 ~~la~~sdg~i~lwd~~~~~~~~~~~~-------~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~ 906 (1012)
..+|+|+.+.|+||++. |+.+..++. ..+.+.|++|+| -.-++|+|+.|.+|.||.....+
T Consensus 1317 piiAsGs~q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1317 PIIASGSAQLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred CeeeecCcceEEEEecC-hhhhcccccCcccccCcCCCcceeeecc-hhHhhhhccCCceEEEeecCCcC
Confidence 99999999999999995 444444432 234689999999 88899999999999999876543
No 198
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.71 E-value=1.7e-14 Score=156.71 Aligned_cols=271 Identities=13% Similarity=0.183 Sum_probs=176.1
Q ss_pred EEEEecCCCeEEEEEccC-CceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEE-CCCeEEEEeec
Q 001790 359 LLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF-TKHLIQLYSYA 436 (1012)
Q Consensus 359 llasg~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~-~d~~v~vwd~~ 436 (1012)
+.++...++.|.+|++.+ ++.... ..+. +.+....++++|++++|++++ .++.|.+|++.
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~-----------------~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~ 65 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLL-----------------QVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIA 65 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeee-----------------eEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEEC
Confidence 445556799999999964 332110 1121 335677899999999987764 57889999997
Q ss_pred CCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEc-CCCcEEEEe-C-CCcc---eeeecCCccCEEEEeccccCCceE
Q 001790 437 GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVWE-L-SGRK---LFNFEGHEAPVYSICPHHKENIQF 510 (1012)
Q Consensus 437 ~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~-~d~~v~vwd-~-~~~~---~~~~~~h~~~v~~~~~~~~~~~~~ 510 (1012)
....+...... ...+....++|+|+++ ++++++ .++.|.+|+ . .+.. +..+.+ .....++++++ ++++
T Consensus 66 ~~g~l~~~~~~-~~~~~p~~i~~~~~g~--~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p--~g~~ 139 (330)
T PRK11028 66 DDGALTFAAES-PLPGSPTHISTDHQGR--FLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDP--DNRT 139 (330)
T ss_pred CCCceEEeeee-cCCCCceEEEECCCCC--EEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCC--CCCE
Confidence 32222211112 2334567899999999 455444 488999999 3 3322 232322 23456677765 5566
Q ss_pred EE-EEecCCeEEEEEcCCCCceee-----e-cCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCC--Ce--eeee
Q 001790 511 IF-STAIDGKIKAWLYDTMGSRVD-----Y-DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE--GT--IKRT 579 (1012)
Q Consensus 511 l~-s~~~dg~i~~wd~~~~~~~~~-----~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~--~~--~~~~ 579 (1012)
++ +...++.|.+||+++...... . ...+.....++|+|+|++++++.. .++.|.+|++.. ++ .+..
T Consensus 140 l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~---~~~~v~v~~~~~~~~~~~~~~~ 216 (330)
T PRK11028 140 LWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE---LNSSVDVWQLKDPHGEIECVQT 216 (330)
T ss_pred EEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec---CCCEEEEEEEeCCCCCEEEEEE
Confidence 65 455679999999986432211 1 112345678999999999988864 488999999873 32 2333
Q ss_pred ecCCCC-----CcceEEEEecCCCEEEEEe-CCCcEEEEeCCCCe----eEEEEecCCCCCCcceeEeecCCCEEEEEEC
Q 001790 580 YAGFRK-----KSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVN----ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (1012)
Q Consensus 580 ~~~~~~-----~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~ 649 (1012)
+..... .....+.++|++++++++. .++.|.+|++.... .+..... + .....+.++|+|++|+++..
T Consensus 217 ~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~--~~p~~~~~~~dg~~l~va~~ 293 (330)
T PRK11028 217 LDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-E--TQPRGFNIDHSGKYLIAAGQ 293 (330)
T ss_pred EecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-c--ccCCceEECCCCCEEEEEEc
Confidence 322111 1123588999999999985 47899999985432 2233222 1 14568999999999998876
Q ss_pred -CCcEEEEEcc
Q 001790 650 -DNGFKILANA 659 (1012)
Q Consensus 650 -dg~i~iwd~~ 659 (1012)
+++|.+|++.
T Consensus 294 ~~~~v~v~~~~ 304 (330)
T PRK11028 294 KSHHISVYEID 304 (330)
T ss_pred cCCcEEEEEEc
Confidence 8899999875
No 199
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.3e-15 Score=140.51 Aligned_cols=225 Identities=13% Similarity=0.139 Sum_probs=161.8
Q ss_pred ceEEEEEecCcceEEEeeccCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCE
Q 001790 766 KVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSY 845 (1012)
Q Consensus 766 ~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 845 (1012)
.|.+-+++|.+++++++..+|.|.++.+....- ++. ...|+...... .+|..++..++|. ..+
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s---~sa----------~~~gk~~iv~e--qahdgpiy~~~f~--d~~ 74 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDS---GSA----------EPPGKLKIVPE--QAHDGPIYYLAFH--DDF 74 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhc---ccc----------CCCCCcceeec--cccCCCeeeeeee--hhh
Confidence 355567899999999999999999998764211 000 11122222122 3499999999998 568
Q ss_pred EEEEcCCcEEEEEcCCCeE------EEEE--c-----CCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeEEec
Q 001790 846 VMSATGGKISLFNMMTFKV------MTTF--M-----SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK 912 (1012)
Q Consensus 846 la~~sdg~i~lwd~~~~~~------~~~~--~-----~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~~~ 912 (1012)
|.+++||.|+-|....... +.+. . ..-..|++|-..|..+.++ .++.|+.++-||+++|+...+++
T Consensus 75 Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~-~AgGD~~~y~~dlE~G~i~r~~r 153 (325)
T KOG0649|consen 75 LLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL-FAGGDGVIYQVDLEDGRIQREYR 153 (325)
T ss_pred eeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE-EecCCeEEEEEEecCCEEEEEEc
Confidence 8888899999997653321 1111 1 1224689999999455544 45589999999999999999999
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCccccEEEecCC----CCCCCCceEEEEcCCCCEEEEEeCCeEEE
Q 001790 913 GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPA----GKTPTGDTRVQFNADQVRMLVVHETQLAI 988 (1012)
Q Consensus 913 ~h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~----~~~~~~v~~l~fs~d~~~l~~~~d~~i~v 988 (1012)
||++.|.++.--.....+.||++||++||||+++++.++.+...... .+....| .+..-+..+|+.|....+.+
T Consensus 154 GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wi--gala~~edWlvCGgGp~lsl 231 (325)
T KOG0649|consen 154 GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWI--GALAVNEDWLVCGGGPKLSL 231 (325)
T ss_pred CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCcee--EEEeccCceEEecCCCceeE
Confidence 99999999998555567889999999999999999977655322111 1111223 34445678899988889999
Q ss_pred EECCCceEEEeecC-CCeeEEEe
Q 001790 989 YDASKMERIRQVGS-PHICSIIF 1010 (1012)
Q Consensus 989 wd~~~~~~~~~~~~-~~i~~~~f 1010 (1012)
|.+.+.+....|.- .++..+.|
T Consensus 232 whLrsse~t~vfpipa~v~~v~F 254 (325)
T KOG0649|consen 232 WHLRSSESTCVFPIPARVHLVDF 254 (325)
T ss_pred EeccCCCceEEEecccceeEeee
Confidence 99999999888864 67777766
No 200
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.71 E-value=6.1e-16 Score=146.45 Aligned_cols=206 Identities=22% Similarity=0.364 Sum_probs=159.6
Q ss_pred CCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc--CCCE
Q 001790 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGNY 420 (1012)
Q Consensus 343 h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~~ 420 (1012)
+-+.|.|+.|.|++.. +|+-. |..|.+|++..+..+. ..+. ...-.+|....++-+||| ||..
T Consensus 122 avg~i~cvew~Pns~k-lasm~-dn~i~l~~l~ess~~v-aev~------------ss~s~e~~~~ftsg~WspHHdgnq 186 (370)
T KOG1007|consen 122 AVGKINCVEWEPNSDK-LASMD-DNNIVLWSLDESSKIV-AEVL------------SSESAEMRHSFTSGAWSPHHDGNQ 186 (370)
T ss_pred HhCceeeEEEcCCCCe-eEEec-cCceEEEEcccCcchh-eeec------------ccccccccceecccccCCCCccce
Confidence 5569999999999986 55544 8999999998876632 1111 011223666788889999 8888
Q ss_pred EEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe--CCCcceeeecCCccCEE
Q 001790 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVY 498 (1012)
Q Consensus 421 las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd--~~~~~~~~~~~h~~~v~ 498 (1012)
+++. .|+++..||+.+.++...+ -..|...|..+.|+|+-+. +|++|+.||.|++|| .+..++.++.+|...|+
T Consensus 187 v~tt-~d~tl~~~D~RT~~~~~sI--~dAHgq~vrdlDfNpnkq~-~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW 262 (370)
T KOG1007|consen 187 VATT-SDSTLQFWDLRTMKKNNSI--EDAHGQRVRDLDFNPNKQH-ILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVW 262 (370)
T ss_pred EEEe-CCCcEEEEEccchhhhcch--hhhhcceeeeccCCCCceE-EEEEcCCCccEEEEeccCCCccccccCCCceEEE
Confidence 8776 6888999999987766543 3479999999999999887 899999999999999 66778999999999999
Q ss_pred EEeccccCCceEEEEEecCCeEEEEEcCCC-----------------------------CceeeecCCCCcEEEEEEccC
Q 001790 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTM-----------------------------GSRVDYDAPGHWCTTMLYSAD 549 (1012)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~-----------------------------~~~~~~~~~~~~v~~~~~s~~ 549 (1012)
++.|++..+ +++++|+.|..|.+|....- +...++..|...|.+++||.-
T Consensus 263 ~VRfn~~hd-qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsa 341 (370)
T KOG1007|consen 263 AVRFNPEHD-QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSA 341 (370)
T ss_pred EEEecCccc-eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccC
Confidence 999999876 79999999999999965321 112245667788999999987
Q ss_pred CCeEEEeeecCCCCCcEEEEeC
Q 001790 550 GSRLFSCGTSKDGDSFLVEWNE 571 (1012)
Q Consensus 550 ~~~l~~~~~~~~~~~~i~lwd~ 571 (1012)
..++++.-. -||.+.|=.+
T Consensus 342 dPWiFASLS---YDGRviIs~V 360 (370)
T KOG1007|consen 342 DPWIFASLS---YDGRVIISSV 360 (370)
T ss_pred CCeeEEEec---cCceEEeecC
Confidence 777665443 3777766544
No 201
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=3e-15 Score=147.22 Aligned_cols=298 Identities=14% Similarity=0.145 Sum_probs=216.3
Q ss_pred eecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCC------CCeeeeeecCCCCCcceEEEEecCCCEEEEEeCC
Q 001790 533 DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES------EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED 606 (1012)
Q Consensus 533 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 606 (1012)
.+..|.+.|+++.|+.++++|++|+ .|..+++|++. +.+++.....++...|.+++|......+++|+.+
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGG----DD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGG----DDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecC----CcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence 3456888999999999999999998 58899999975 3466666666776689999999999999999999
Q ss_pred CcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeec
Q 001790 607 SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALK 686 (1012)
Q Consensus 607 g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s 686 (1012)
++|...|+++.+.+..+......+.|..+..+|..+.+++.+.++.|.+||.......... +...
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~---------------~~~A 191 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISL---------------VLPA 191 (609)
T ss_pred ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCce---------------eeec
Confidence 9999999999999998877776678999999999999999999999999998764211100 0000
Q ss_pred cccccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCc
Q 001790 687 VSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSK 766 (1012)
Q Consensus 687 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (1012)
. ....
T Consensus 192 N---------------------------------------------------------------------------~~~~ 196 (609)
T KOG4227|consen 192 N---------------------------------------------------------------------------SGKN 196 (609)
T ss_pred C---------------------------------------------------------------------------CCcc
Confidence 0 1223
Q ss_pred eEEEEEecCcce-EEEeeccCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCE
Q 001790 767 VVRLLYTNSAVG-LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSY 845 (1012)
Q Consensus 767 i~~l~~s~~g~~-l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 845 (1012)
...+.|.|.... |++..+.|-+-+||........ ..+....+ ++. ....-..+.|+|+|..
T Consensus 197 F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~----------~~~~~~~~------L~~--~~~~~M~~~~~~~G~Q 258 (609)
T KOG4227|consen 197 FYTAEFHPETPALILVNSETGGPNVFDRRMQARPV----------YQRSMFKG------LPQ--ENTEWMGSLWSPSGNQ 258 (609)
T ss_pred ceeeeecCCCceeEEeccccCCCCceeeccccchH----------Hhhhcccc------Ccc--cchhhhheeeCCCCCe
Confidence 445667776554 5555667888899876533210 00000000 100 1222346789999998
Q ss_pred EEEEcC-CcEEEEEcCCCeEE-EEEcCCC-------CCeeEEEEecCCCcEEEEEeCCCeEEEEEccCC-----------
Q 001790 846 VMSATG-GKISLFNMMTFKVM-TTFMSPP-------PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD----------- 905 (1012)
Q Consensus 846 la~~sd-g~i~lwd~~~~~~~-~~~~~~~-------~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~----------- 905 (1012)
+.+--. ..-.+||+-+.++. ..+. |. ..+.+++|.. ...+++|+.+-.|++|.+...
T Consensus 259 ~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~--D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~ 335 (609)
T KOG4227|consen 259 FMSIRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFID--DYTVATGSDHWGIHIWKLPRANDSYGFTQIGH 335 (609)
T ss_pred ehhhhccCCCEEeeeecccceeEecc-CCCCcceeeeeeeeeeeec--ceeeeccCcccceEEEecCCCccccCccccCc
Confidence 877663 34667788764432 2332 22 2467788874 456999999999999998521
Q ss_pred ------------eEeEEecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001790 906 ------------EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSID 945 (1012)
Q Consensus 906 ------------~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~ 945 (1012)
+.+..++||.+-+..|.|+|...+|++.+-.+.++||.--
T Consensus 336 ~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 336 DEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred chhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence 2345688999999999999999999999999999999754
No 202
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.70 E-value=2.1e-14 Score=154.49 Aligned_cols=329 Identities=12% Similarity=0.090 Sum_probs=201.9
Q ss_pred EEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceE
Q 001790 511 IFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV 590 (1012)
Q Consensus 511 l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~ 590 (1012)
+++-..+|.|.+.|..+.+....+.........+.++|||+++++++ .++.|.++|+.+++.+.++.... ....
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~----rdg~vsviD~~~~~~v~~i~~G~--~~~~ 82 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVAN----RDGTVSVIDLATGKVVATIKVGG--NPRG 82 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEE----TTSEEEEEETTSSSEEEEEE-SS--EEEE
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEc----CCCeEEEEECCcccEEEEEecCC--Ccce
Confidence 35566789999999999888888876665556688999999999987 48999999999999998887644 4677
Q ss_pred EEEecCCCEEEEEe-CCCcEEEEeCCCCeeEEEEecCCC-----CCCcceeEeecCCCEEEEEEC-CCcEEEEEccCCce
Q 001790 591 VQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGG-----LPNLPRLRFSKEGNLLAVTTA-DNGFKILANAIGLR 663 (1012)
Q Consensus 591 ~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~v~~s~~g~~l~~~~~-dg~i~iwd~~~~~~ 663 (1012)
+++++||++++++. ..+.+.++|.++.+.++.+...+. ...+..+..+|....+++.-. .+.|.+.|..+...
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~ 162 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN 162 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC
T ss_pred EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc
Confidence 99999999999876 689999999999999988765322 235667777888775555544 47777767554311
Q ss_pred eeecccCCccccccCccceeeeccccccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcce
Q 001790 664 SLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQL 743 (1012)
Q Consensus 664 ~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~ 743 (1012)
.....
T Consensus 163 ~~~~~--------------------------------------------------------------------------- 167 (369)
T PF02239_consen 163 LKVTT--------------------------------------------------------------------------- 167 (369)
T ss_dssp EEEEE---------------------------------------------------------------------------
T ss_pred cceee---------------------------------------------------------------------------
Confidence 11000
Q ss_pred eEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEee-ccCeeEeeeccccccCCCCCccccccceeeccCCCceee
Q 001790 744 AEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG-SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA 822 (1012)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~-~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 822 (1012)
+. .........|+|++++++++. .+..+-++|..+..+ +..+..|....
T Consensus 168 -----------i~------~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~-------------v~~i~~g~~p~ 217 (369)
T PF02239_consen 168 -----------IK------VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL-------------VALIDTGKKPH 217 (369)
T ss_dssp -----------EE--------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE-------------EEEEE-SSSBE
T ss_pred -----------ec------ccccccccccCcccceeeecccccceeEEEeeccceE-------------EEEeecccccc
Confidence 00 112334567888888776654 456777777544321 11111121100
Q ss_pred -ecccCCCCCC--CEeEEEEeeCCCEEE-EEcCCcEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEE----eCC
Q 001790 823 -NDVAGVNLEE--AVPCIALSKNDSYVM-SATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG----TED 894 (1012)
Q Consensus 823 -~~~~~~~~~~--~v~~~~~s~dg~~la-~~sdg~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~----~~d 894 (1012)
.......|.. ++. +.+..+...+ ..+.+.+.+||..+.+.++++....+. ..+..+| +++++.+. ...
T Consensus 218 ~~~~~~~php~~g~vw--~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP-~s~~vwvd~~~~~~~ 293 (369)
T PF02239_consen 218 PGPGANFPHPGFGPVW--ATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP-DSRYVWVDTFLNPDA 293 (369)
T ss_dssp ETTEEEEEETTTEEEE--EEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--T-T-SEEEEE-TT-SSH
T ss_pred ccccccccCCCcceEE--eeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCC-CCccEEeeccCCCCC
Confidence 0000000111 121 1223333332 223456778999999999999876666 7788899 89999887 455
Q ss_pred CeEEEEEccCCeEeEEecccC-CCeEEEEEcCCCCEEEEEeCC--CcEEEEeCCCCCccccEE
Q 001790 895 STIHIYNVRVDEVKSKLKGHQ-KRITGLAFSTSLNILVSSGAD--AQLCVWSIDTWEKRKSVT 954 (1012)
Q Consensus 895 g~v~iwd~~~~~~~~~~~~h~-~~V~~l~~spdg~~l~s~s~D--g~i~vwd~~~~~~~~~~~ 954 (1012)
++|.++|.++.+.+.++.... ..+..+.|++||+.+..+..+ +.|.|||..+.+.+..+.
T Consensus 294 ~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 294 DTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp T-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred ceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 799999999998888875332 358999999999976655443 369999999998776654
No 203
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.70 E-value=2.6e-15 Score=142.27 Aligned_cols=256 Identities=16% Similarity=0.223 Sum_probs=182.7
Q ss_pred ecCCCceEEEEEecCCCcEEEEecCC-------CeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEE
Q 001790 341 LHQGSTVISMDFHPSHQTLLLVGSSN-------GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1012)
Q Consensus 341 ~~h~~~V~~~~~spdg~~llasg~~d-------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 413 (1012)
++|.++|+.++=+|..+++|++...+ ..+.||.+....... +...|+ .....-..+-+.|.|+.
T Consensus 60 ~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S--~~~tlE-------~v~~Ldteavg~i~cve 130 (370)
T KOG1007|consen 60 FHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS--NSSTLE-------CVASLDTEAVGKINCVE 130 (370)
T ss_pred hcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc--ccchhh-------HhhcCCHHHhCceeeEE
Confidence 45788999999999988899987543 257789885433221 010000 01111224556999999
Q ss_pred EccCCCEEEEEECCCeEEEEeecCCCccee-ee--eeeccccCeEEEEEeC--CCCceEEEEEcCCCcEEEEe-CCCcce
Q 001790 414 WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQ-HS--QIDAHVGAVNDLAFAY--PNKLLCVVTCGDDKLIKVWE-LSGRKL 487 (1012)
Q Consensus 414 ~spdg~~las~~~d~~v~vwd~~~~~~~~~-~~--~l~~h~~~v~~l~~s~--~~~~~~l~s~~~d~~v~vwd-~~~~~~ 487 (1012)
|.|++..+|+-. |..|.+|+++.+..+.. .. .-.+|....++-+|+| +|. .+++.+ |+++..|| .+.++.
T Consensus 131 w~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn--qv~tt~-d~tl~~~D~RT~~~~ 206 (370)
T KOG1007|consen 131 WEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN--QVATTS-DSTLQFWDLRTMKKN 206 (370)
T ss_pred EcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc--eEEEeC-CCcEEEEEccchhhh
Confidence 999999998765 77899999998765311 10 1123566788899999 555 566665 89999999 766666
Q ss_pred eeec-CCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCC-ceeeecCCCCcEEEEEEccCCCeE-EEeeecCCCCC
Q 001790 488 FNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG-SRVDYDAPGHWCTTMLYSADGSRL-FSCGTSKDGDS 564 (1012)
Q Consensus 488 ~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~~~~~~~ 564 (1012)
..+. .|...|..+.|+|+. ..+|++|+.||.|++||.+..+ +...+..|.+.|.++.|+|.-..| ++++ .|.
T Consensus 207 ~sI~dAHgq~vrdlDfNpnk-q~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~----SDs 281 (370)
T KOG1007|consen 207 NSIEDAHGQRVRDLDFNPNK-QHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGG----SDS 281 (370)
T ss_pred cchhhhhcceeeeccCCCCc-eEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecC----CCc
Confidence 5554 688899999998875 3689999999999999998655 456788999999999999976554 4555 477
Q ss_pred cEEEEeCCCC-----------------------------eeeeeecCCCCCcceEEEEecCCCEEEE-EeCCCcEEEEeC
Q 001790 565 FLVEWNESEG-----------------------------TIKRTYAGFRKKSNGVVQFDTTQNHFLA-VGEDSQIKFWDM 614 (1012)
Q Consensus 565 ~i~lwd~~~~-----------------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~ 614 (1012)
.|.+|....- ..+.++..|.+ .|++++|+.-..++++ -+.||++.|=.+
T Consensus 282 ~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED-SVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 282 AVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED-SVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred eeEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc-ceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 8888854311 12235666666 8999999987777555 579999988655
Q ss_pred C
Q 001790 615 D 615 (1012)
Q Consensus 615 ~ 615 (1012)
.
T Consensus 361 ~ 361 (370)
T KOG1007|consen 361 P 361 (370)
T ss_pred C
Confidence 3
No 204
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.69 E-value=7.7e-17 Score=173.36 Aligned_cols=291 Identities=13% Similarity=0.176 Sum_probs=220.8
Q ss_pred CceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCc
Q 001790 529 GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ 608 (1012)
Q Consensus 529 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 608 (1012)
+....+.+|...|.|+.|...|.++++++ .|..++||...++.++....||.. .++.++.+.+.-++++++.|..
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgs----dd~lvKiwS~et~~~lAs~rGhs~-ditdlavs~~n~~iaaaS~D~v 255 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGS----DDRLVKIWSMETARCLASCRGHSG-DITDLAVSSNNTMIAAASNDKV 255 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecC----ccceeeeeeccchhhhccCCCCcc-ccchhccchhhhhhhhcccCce
Confidence 33445667888999999999999999998 588999999999999999999988 8999999998889999999999
Q ss_pred EEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeeccc
Q 001790 609 IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVS 688 (1012)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~ 688 (1012)
|++|.+..+.++..+..+ .+.|++++|+|-. +.+.||++++||..-. .. .....+. .+
T Consensus 256 IrvWrl~~~~pvsvLrgh--tgavtaiafsP~~----sss~dgt~~~wd~r~~--~~-~y~prp~------------~~- 313 (1113)
T KOG0644|consen 256 IRVWRLPDGAPVSVLRGH--TGAVTAIAFSPRA----SSSDDGTCRIWDARLE--PR-IYVPRPL------------KF- 313 (1113)
T ss_pred EEEEecCCCchHHHHhcc--ccceeeeccCccc----cCCCCCceEecccccc--cc-ccCCCCC------------Cc-
Confidence 999999999999888755 4589999999964 7788999999997611 00 0000000 00
Q ss_pred cccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceE
Q 001790 689 ASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVV 768 (1012)
Q Consensus 689 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~ 768 (1012)
....-+.
T Consensus 314 -------------------------------------------------------------------------~~~~~~~ 320 (1113)
T KOG0644|consen 314 -------------------------------------------------------------------------TEKDLVD 320 (1113)
T ss_pred -------------------------------------------------------------------------cccccee
Confidence 0123345
Q ss_pred EEEEecCcceEEEeeccCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCC-CEEE
Q 001790 769 RLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKND-SYVM 847 (1012)
Q Consensus 769 ~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg-~~la 847 (1012)
++.|...+..+++++.|+..+.|.+..... +...+.-+.++.|- .+.+
T Consensus 321 s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~-------------------------------~~~~lif~t~ssd~~~~~~ 369 (1113)
T KOG0644|consen 321 SILFENNGDRFLTGSRDGEARNHEFEQLAW-------------------------------RSNLLIFVTRSSDLSSIVV 369 (1113)
T ss_pred eeeccccccccccccCCcccccchhhHhhh-------------------------------hccceEEEeccccccccce
Confidence 566666777777777777777765432111 11222222222232 2334
Q ss_pred EEc-CCcEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeEEecccCCCeEEEEEcCC
Q 001790 848 SAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTS 926 (1012)
Q Consensus 848 ~~s-dg~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spd 926 (1012)
++- +-.+.+|++.+|.+.+.+.+|...+..|.++|-+.++..+++.||...|||+-.|.+++.+....+.+..-+||+|
T Consensus 370 ~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqd 449 (1113)
T KOG0644|consen 370 TARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQD 449 (1113)
T ss_pred eeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCC
Confidence 443 6789999999999999999999999999999988888889999999999999999777665433455667799999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCcc
Q 001790 927 LNILVSSGADAQLCVWSIDTWEKR 950 (1012)
Q Consensus 927 g~~l~s~s~Dg~i~vwd~~~~~~~ 950 (1012)
|..++....-|.++|.....++..
T Consensus 450 gts~~lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 450 GTSIALSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred CceEecCCCCCceEEeccCCCccc
Confidence 999998888899999988765543
No 205
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=3.9e-15 Score=166.50 Aligned_cols=235 Identities=11% Similarity=0.090 Sum_probs=163.3
Q ss_pred CCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEECC---CeEEEEeecCCCcce
Q 001790 366 NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLR 442 (1012)
Q Consensus 366 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d---~~v~vwd~~~~~~~~ 442 (1012)
+..|.|||...... ..+..|...+.+.+|||||+.|+.++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~--------------------~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQ--------------------FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCc--------------------eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 46899999864432 1256678889999999999999988754 369999998875432
Q ss_pred eeeeeeccccCeEEEEEeCCCCceEEEEE-cCCCcEEEE--eCCCcceeeecCCccCEEEEeccccCCceEEEE-EecCC
Q 001790 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTC-GDDKLIKVW--ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFS-TAIDG 518 (1012)
Q Consensus 443 ~~~~l~~h~~~v~~l~~s~~~~~~~l~s~-~~d~~v~vw--d~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s-~~~dg 518 (1012)
...+.+| ..+++|+|||+ .|+.+ +.+|.+.|| |..+.....+..+...+...+|++ ||+.|+. +..+|
T Consensus 243 -l~~~~g~---~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp--DG~~i~f~s~~~g 314 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSP--DGQSILFTSDRSG 314 (429)
T ss_pred -EecCCCc---cCceeECCCCC--EEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECC--CCCEEEEEECCCC
Confidence 1123333 44689999999 55544 467876665 555555667777777788888876 5565554 44678
Q ss_pred eEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCC
Q 001790 519 KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598 (1012)
Q Consensus 519 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 598 (1012)
...+|+++..........+.. ....|+|||+++++.+. ..+.+||+.+++........ ....+.|+|+|+
T Consensus 315 ~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG~ 384 (429)
T PRK01742 315 SPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING-----DNVVKQDLTSGSTEVLSSTF---LDESPSISPNGI 384 (429)
T ss_pred CceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeEEecCCC---CCCCceECCCCC
Confidence 889998765433222222322 45789999999988762 34677999888765433222 234578999999
Q ss_pred EEEEEeCCCcEEEEeC--CCCeeEEEEecCCCCCCcceeEeecC
Q 001790 599 HFLAVGEDSQIKFWDM--DNVNILTSTDAEGGLPNLPRLRFSKE 640 (1012)
Q Consensus 599 ~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~v~~s~~ 640 (1012)
+|+.++.+|.+.+|++ .++.....+..+. ..+...+|+|-
T Consensus 385 ~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~--g~~~~p~wsp~ 426 (429)
T PRK01742 385 MIIYSSTQGLGKVLQLVSADGRFKARLPGSD--GQVKFPAWSPY 426 (429)
T ss_pred EEEEEEcCCCceEEEEEECCCCceEEccCCC--CCCCCcccCCC
Confidence 9999999998888875 3567777775433 36788999984
No 206
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=1e-14 Score=161.40 Aligned_cols=302 Identities=13% Similarity=0.214 Sum_probs=205.2
Q ss_pred cceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCC-CCCCcceeEeec--CCCEEEEEECCCcEEEEEccCCc-
Q 001790 587 SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG-GLPNLPRLRFSK--EGNLLAVTTADNGFKILANAIGL- 662 (1012)
Q Consensus 587 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~--~g~~l~~~~~dg~i~iwd~~~~~- 662 (1012)
....+.|+|-...++++.+.-.|++||.+.++.+..+.... ....|+.+.+-. |..++.+++.||.||||+--...
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 45668899999999999988899999999999988776433 123578888765 56789999999999999753321
Q ss_pred eeeecccCCccccccCccceeeeccccccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcc
Q 001790 663 RSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQ 742 (1012)
Q Consensus 663 ~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~ 742 (1012)
...+.+. +|++-... +-+
T Consensus 1146 ~~~eLVT--------------aw~~Ls~~-------------------------------------~~~----------- 1163 (1387)
T KOG1517|consen 1146 KKPELVT--------------AWSSLSDQ-------------------------------------LPG----------- 1163 (1387)
T ss_pred CCceeEE--------------eecccccc-------------------------------------Ccc-----------
Confidence 0000000 01000000 000
Q ss_pred eeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeeccCeeEeeeccccccCCCCCccccccceeeccCCCceee
Q 001790 743 LAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA 822 (1012)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 822 (1012)
..+.-.-+.|......|+++|.-..|++||.+.... +-|+.
T Consensus 1164 --------------------~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~-------------~~diP------ 1204 (1387)
T KOG1517|consen 1164 --------------------ARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQV-------------VADIP------ 1204 (1387)
T ss_pred --------------------CCCCCeeeehhhhCCeEEecCCeeEEEEEeccccee-------------Eeecc------
Confidence 001112234555555677777788999998754321 11111
Q ss_pred ecccCCCCCCCEeEEEEee-CCCEEEEEc-CCcEEEEEcCCCe---EEEEEcCCCCC--eeEEEEecCCCcEEEEEeCCC
Q 001790 823 NDVAGVNLEEAVPCIALSK-NDSYVMSAT-GGKISLFNMMTFK---VMTTFMSPPPA--STFLAFHPQDNNIIAIGTEDS 895 (1012)
Q Consensus 823 ~~~~~~~~~~~v~~~~~s~-dg~~la~~s-dg~i~lwd~~~~~---~~~~~~~~~~~--i~~l~~sp~d~~~las~~~dg 895 (1012)
.+ ...-|+++.-+. .|..+++|. ||.|++||..... .+...+.|... |..+.+-+.+-..|++|+.||
T Consensus 1205 ---~~--s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G 1279 (1387)
T KOG1517|consen 1205 ---YG--SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDG 1279 (1387)
T ss_pred ---cC--CCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCC
Confidence 11 344455554433 468888887 9999999987543 45667778877 999999883334599999999
Q ss_pred eEEEEEccCCeEeE--EecccC--C-CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCccccEEEecCCCCCCCCceEEE
Q 001790 896 TIHIYNVRVDEVKS--KLKGHQ--K-RITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQ 970 (1012)
Q Consensus 896 ~v~iwd~~~~~~~~--~~~~h~--~-~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~ 970 (1012)
.|++||+....... ++..|. + ..+++..+++...+|+|+. +.|+||++...+.........+.+...+.+.+++
T Consensus 1280 ~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~ 1358 (1387)
T KOG1517|consen 1280 DIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLA 1358 (1387)
T ss_pred eEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceee
Confidence 99999998742222 223333 3 5899999999999999998 9999999987554333333344444557889999
Q ss_pred EcCCCCEEEEE-eCCeEEEEECCCce
Q 001790 971 FNADQVRMLVV-HETQLAIYDASKME 995 (1012)
Q Consensus 971 fs~d~~~l~~~-~d~~i~vwd~~~~~ 995 (1012)
|.|---+|++| .|..|.||..+..+
T Consensus 1359 FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1359 FHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred ecchhHhhhhccCCceEEEeecCCcC
Confidence 99999999998 68999999887654
No 207
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=1.7e-13 Score=135.15 Aligned_cols=239 Identities=10% Similarity=0.090 Sum_probs=181.8
Q ss_pred CcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCC--CcEEEEe-C
Q 001790 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD--KLIKVWE-L 482 (1012)
Q Consensus 406 ~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d--~~v~vwd-~ 482 (1012)
...+..+.|+.|...|..|+.|| -++|+.+.-.... ........|.-+-|+.. ++|..+.+ +.+++.+ .
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFSSS----LvaiV~~~qpr~Lkv~~~K 76 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFSSS----LVAIVSIKQPRKLKVVHFK 76 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeecccc----eeEEEecCCCceEEEEEcc
Confidence 34677788999999999999999 6788876543211 12223334666667643 44444433 4588999 6
Q ss_pred CCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCC---CCcEEEEEEccCCCeEEEeeec
Q 001790 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP---GHWCTTMLYSADGSRLFSCGTS 559 (1012)
Q Consensus 483 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~~ 559 (1012)
.+..+..+. ...+|.++.++. +.|+++-++. |.|||+++.+...++... ...+.++++++.+.+++.-+.
T Consensus 77 k~~~ICe~~-fpt~IL~VrmNr----~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s- 149 (391)
T KOG2110|consen 77 KKTTICEIF-FPTSILAVRMNR----KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS- 149 (391)
T ss_pred cCceEEEEe-cCCceEEEEEcc----ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC-
Confidence 666666554 456788888743 4566655444 999999998887765443 335677777777778886543
Q ss_pred CCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCc-EEEEeCCCCeeEEEEecCCCCCCcceeEee
Q 001790 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ-IKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1012)
Q Consensus 560 ~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1012)
...|.|.+||..+-+.+..+..|.+ .+.+++|+++|.+|+++++.|+ |||+.+.+|+.+..+........|.+++|+
T Consensus 150 -~t~GdV~l~d~~nl~~v~~I~aH~~-~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs 227 (391)
T KOG2110|consen 150 -TTSGDVVLFDTINLQPVNTINAHKG-PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFS 227 (391)
T ss_pred -CCCceEEEEEcccceeeeEEEecCC-ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEEC
Confidence 2478899999999999999998877 8999999999999999999887 699999999999999765555678999999
Q ss_pred cCCCEEEEEECCCcEEEEEccCC
Q 001790 639 KEGNLLAVTTADNGFKILANAIG 661 (1012)
Q Consensus 639 ~~g~~l~~~~~dg~i~iwd~~~~ 661 (1012)
|++.+|++.++.++|.+|.+...
T Consensus 228 ~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 228 PDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCCCeEEEecCCCeEEEEEeccc
Confidence 99999999999999999998764
No 208
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.65 E-value=1.1e-14 Score=163.85 Aligned_cols=177 Identities=15% Similarity=0.170 Sum_probs=136.5
Q ss_pred EeCCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCC-------CceeeecCCCCcEEEEEEccCCCe
Q 001790 480 WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-------GSRVDYDAPGHWCTTMLYSADGSR 552 (1012)
Q Consensus 480 wd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~-------~~~~~~~~~~~~v~~~~~s~~~~~ 552 (1012)
|+..|..+..+..|...+..++.+. +.+.++++|+.||+|++|+.+.. +...++...+..+..+.+.+.+..
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~-~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSS-EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCccceEeehhhhccccccceeecC-CCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 8889999999999999999988764 35579999999999999998642 233455667788999999999999
Q ss_pred EEEeeecCCCCCcEEEEeCCCC-------eeeeeecCCCCCc-ceEEEEec-CCC-EEEEEeCCCcEEEEeCCCCeeEEE
Q 001790 553 LFSCGTSKDGDSFLVEWNESEG-------TIKRTYAGFRKKS-NGVVQFDT-TQN-HFLAVGEDSQIKFWDMDNVNILTS 622 (1012)
Q Consensus 553 l~~~~~~~~~~~~i~lwd~~~~-------~~~~~~~~~~~~~-v~~~~~s~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~ 622 (1012)
+++++ .||.|++.++... ...+....+..+. +..-++.. .+. .++.+..-+.|..||.........
T Consensus 1113 ~Av~t----~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1113 FAVST----KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred EEEEc----CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence 99997 6999999988652 1122222222222 22233332 223 677788899999999998887777
Q ss_pred EecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCC
Q 001790 623 TDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1012)
Q Consensus 623 ~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~ 661 (1012)
++.....+.|++++.+|.+.+++.|+..|.+.+||++=+
T Consensus 1189 lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecC
Confidence 766665668999999999999999999999999998654
No 209
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.65 E-value=6.8e-14 Score=137.90 Aligned_cols=159 Identities=14% Similarity=0.255 Sum_probs=128.4
Q ss_pred CCCCEeEEEEeeCCCEEEEEcCCcEEEEEcCCCeEEEEEcCC---CCCeeEEEEecCCCcEEEEEe--CCCeEEEEEccC
Q 001790 830 LEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSP---PPASTFLAFHPQDNNIIAIGT--EDSTIHIYNVRV 904 (1012)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~---~~~i~~l~~sp~d~~~las~~--~dg~v~iwd~~~ 904 (1012)
....|.++.+. .++|+++-...|+|||+.+.+.++++..- ...+.++.+++ ++.+||.-+ ..|.|.|||+.+
T Consensus 86 fpt~IL~VrmN--r~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~n~ylAyp~s~t~GdV~l~d~~n 162 (391)
T KOG2110|consen 86 FPTSILAVRMN--RKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-ANCYLAYPGSTTSGDVVLFDTIN 162 (391)
T ss_pred cCCceEEEEEc--cceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCC-CCceEEecCCCCCceEEEEEccc
Confidence 45678777775 45677776666999999999999887643 33355555555 566888643 468999999999
Q ss_pred CeEeEEecccCCCeEEEEEcCCCCEEEEEeCCCc-EEEEeCCCCCccccEEEecCCCCCCCCceEEEEcCCCCEEEEE-e
Q 001790 905 DEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQ-LCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-H 982 (1012)
Q Consensus 905 ~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~-~ 982 (1012)
-+.+..+.+|.+.+.+++|+++|.+|||+|+.|+ |||+.+.+|+.+..+ ..|.....|.+++|+||+.+|+++ +
T Consensus 163 l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eF----RRG~~~~~IySL~Fs~ds~~L~~sS~ 238 (391)
T KOG2110|consen 163 LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEF----RRGTYPVSIYSLSFSPDSQFLAASSN 238 (391)
T ss_pred ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeee----eCCceeeEEEEEEECCCCCeEEEecC
Confidence 9999999999999999999999999999999998 599999999975443 344445788999999999999997 5
Q ss_pred CCeEEEEECCCce
Q 001790 983 ETQLAIYDASKME 995 (1012)
Q Consensus 983 d~~i~vwd~~~~~ 995 (1012)
.++|+||.++.-.
T Consensus 239 TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 239 TETVHIFKLEKVS 251 (391)
T ss_pred CCeEEEEEecccc
Confidence 6899999987644
No 210
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.65 E-value=2.8e-14 Score=137.75 Aligned_cols=237 Identities=15% Similarity=0.153 Sum_probs=176.0
Q ss_pred CCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001790 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1012)
Q Consensus 343 h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 422 (1012)
-..+|+|.+|++|++ .+|++.....|.||.....+.- ...+++..|...|++|.|+|..+.|+
T Consensus 9 ~~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w----------------~~~htls~Hd~~vtgvdWap~snrIv 71 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLW----------------EPAHTLSEHDKIVTGVDWAPKSNRIV 71 (361)
T ss_pred ccCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCc----------------eeceehhhhCcceeEEeecCCCCcee
Confidence 356999999999999 6888888899999998765421 12355888999999999999999999
Q ss_pred EEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEeCCCcce-----eeecCCccCE
Q 001790 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKL-----FNFEGHEAPV 497 (1012)
Q Consensus 423 s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd~~~~~~-----~~~~~h~~~v 497 (1012)
+|+.|..-+||....+...+....+..|....+++.|+|.+. .||+|+....|.||-.+++-- +.-+.+...|
T Consensus 72 tcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv 149 (361)
T KOG1523|consen 72 TCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTV 149 (361)
T ss_pred EccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCccccce
Confidence 999999999999955555555556778999999999999999 899999999999988333221 1223467789
Q ss_pred EEEeccccCCceEEEEEecCCeEEEEEcC-----C-------------CCceeeecCCCCcEEEEEEccCCCeEEEeeec
Q 001790 498 YSICPHHKENIQFIFSTAIDGKIKAWLYD-----T-------------MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1012)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~~wd~~-----~-------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 559 (1012)
.++.|+++ +-+|++|+.|+..+++..- . +....++....+.+..+.|+|+|..|+-.+
T Consensus 150 ~sldWhpn--nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~-- 225 (361)
T KOG1523|consen 150 TSLDWHPN--NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVG-- 225 (361)
T ss_pred eeeeccCC--cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEec--
Confidence 99999984 4789999999999998541 1 111223345567899999999999999888
Q ss_pred CCCCCcEEEEeCCCCe-eeeeecCCCCCcceEEEEecCCCEEEEEeCC
Q 001790 560 KDGDSFLVEWNESEGT-IKRTYAGFRKKSNGVVQFDTTQNHFLAVGED 606 (1012)
Q Consensus 560 ~~~~~~i~lwd~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 606 (1012)
.|..+.+-|..... .+........ +..++.|-.+ +.++.++.|
T Consensus 226 --Hds~v~~~da~~p~~~v~~~~~~~l-P~ls~~~ise-~~vv~ag~~ 269 (361)
T KOG1523|consen 226 --HDSTVSFVDAAGPSERVQSVATAQL-PLLSVSWISE-NSVVAAGYD 269 (361)
T ss_pred --CCCceEEeecCCCchhccchhhccC-CceeeEeecC-CceeecCCC
Confidence 48889888876554 2333322222 4555555443 344444544
No 211
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.64 E-value=6.5e-14 Score=135.25 Aligned_cols=233 Identities=18% Similarity=0.201 Sum_probs=180.7
Q ss_pred CCcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CC
Q 001790 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (1012)
Q Consensus 405 h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~ 483 (1012)
-..+|+|.+|++|+..+|++-....|.||.....+.....+++..|...|+.++|+|... .|++|+.|..-++|. .+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCC
Confidence 346899999999999999999999999999998887777778999999999999999998 799999999999999 34
Q ss_pred C---cceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCcee----eecCCCCcEEEEEEccCCCeEEEe
Q 001790 484 G---RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----DYDAPGHWCTTMLYSADGSRLFSC 556 (1012)
Q Consensus 484 ~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~ 556 (1012)
+ ++...+..+....+++.|+|.+ +.+++|+....|.+|-++..+.=. .-......|.++.|+|++-++++|
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 4 3445566788999999998855 589999999999999887654432 223445679999999999999999
Q ss_pred eecCCCCCcEEEEeCC-----C-------------CeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCe
Q 001790 557 GTSKDGDSFLVEWNES-----E-------------GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1012)
Q Consensus 557 ~~~~~~~~~i~lwd~~-----~-------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1012)
+. |+..+++..- + |+++..+. ...+.+..+.|+|+|+.|+-.+.|+.+.+-|.....
T Consensus 165 s~----D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 165 ST----DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cc----CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 85 8888887531 1 22333333 223468889999999999999999999999987664
Q ss_pred -eEEEEecCCCCCCcceeEeecCCCEEEEEE
Q 001790 619 -ILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1012)
Q Consensus 619 -~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~ 648 (1012)
.+....... -+..++.|-.+...++.|.
T Consensus 240 ~~v~~~~~~~--lP~ls~~~ise~~vv~ag~ 268 (361)
T KOG1523|consen 240 ERVQSVATAQ--LPLLSVSWISENSVVAAGY 268 (361)
T ss_pred hhccchhhcc--CCceeeEeecCCceeecCC
Confidence 233332221 2567777766655444443
No 212
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.63 E-value=3.7e-14 Score=134.74 Aligned_cols=250 Identities=12% Similarity=0.211 Sum_probs=176.4
Q ss_pred ecCCCceEEEEEecCC----CcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc
Q 001790 341 LHQGSTVISMDFHPSH----QTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1012)
Q Consensus 341 ~~h~~~V~~~~~spdg----~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 416 (1012)
|.|.-+++.+.|.|+. ..+||+. +..+++|.+...+...... ..+....-..+.+++++..|+.
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~----------~~L~~~kns~~~aPlTSFDWne 160 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQ----------SVLNNNKNSEFCAPLTSFDWNE 160 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehh----------hhhccCcccccCCccccccccc
Confidence 6799999999999986 2467764 4589999987432211100 0011112344678999999998
Q ss_pred -CCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCc---ceeeec
Q 001790 417 -DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR---KLFNFE 491 (1012)
Q Consensus 417 -dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~---~~~~~~ 491 (1012)
|-++|.+++-|.+..|||+++|..-.....|-.|...|..++|...+.. .||+.|.||+|+++| ..-+ .+.+-.
T Consensus 161 ~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRmFDLR~leHSTIIYE~p 239 (364)
T KOG0290|consen 161 VDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRMFDLRSLEHSTIIYEDP 239 (364)
T ss_pred CCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEEEEecccccceEEecCC
Confidence 7889999999999999999998543333357899999999999997776 899999999999999 3222 222222
Q ss_pred CCccCEEEEeccccCCceEEEEEecC-CeEEEEEcCCCC-ceeeecCCCCcEEEEEEccCC-CeEEEeeecCCCCCcEEE
Q 001790 492 GHEAPVYSICPHHKENIQFIFSTAID-GKIKAWLYDTMG-SRVDYDAPGHWCTTMLYSADG-SRLFSCGTSKDGDSFLVE 568 (1012)
Q Consensus 492 ~h~~~v~~~~~~~~~~~~~l~s~~~d-g~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~l 568 (1012)
....+...++|+.. |-.++++-..| ..|.+.|++... ....+..|.+.|+.++|.|.. ..|.+++ .|..+.+
T Consensus 240 ~~~~pLlRLswnkq-DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaG----DD~qali 314 (364)
T KOG0290|consen 240 SPSTPLLRLSWNKQ-DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAG----DDCQALI 314 (364)
T ss_pred CCCCcceeeccCcC-CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecC----CcceEEE
Confidence 22567788888765 44677775554 578899998754 455788999999999999965 4666666 5889999
Q ss_pred EeCCCCee------eeeecCCCCCcceEEEEecC-CCEEEEEeCCCcEEE
Q 001790 569 WNESEGTI------KRTYAGFRKKSNGVVQFDTT-QNHFLAVGEDSQIKF 611 (1012)
Q Consensus 569 wd~~~~~~------~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i 611 (1012)
||+...-. +..+. .+..|+.+.|++. ..+++.+.. +++.+
T Consensus 315 WDl~q~~~~~~~dPilay~--a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 315 WDLQQMPRENGEDPILAYT--AGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred EecccccccCCCCchhhhh--ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 99875322 22222 2236888999964 456666543 34443
No 213
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=5.6e-15 Score=148.42 Aligned_cols=196 Identities=15% Similarity=0.172 Sum_probs=147.2
Q ss_pred EEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEECC
Q 001790 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK 427 (1012)
Q Consensus 348 ~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d 427 (1012)
.+++|+++|. .+++|+.||++|||++.+...+.. ...|.+.|.++.|||||++|++-+.|
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~t~l~-------------------e~~~~~eV~DL~FS~dgk~lasig~d 207 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSMLTILE-------------------EIAHHAEVKDLDFSPDGKFLASIGAD 207 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCcchhhhh-------------------hHhhcCccccceeCCCCcEEEEecCC
Confidence 8899999999 799999999999999877665543 55689999999999999999999999
Q ss_pred CeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCC---CceEEEEEcCCCcEEEEe---CCC-cc--eeeecCCccCEE
Q 001790 428 HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPN---KLLCVVTCGDDKLIKVWE---LSG-RK--LFNFEGHEAPVY 498 (1012)
Q Consensus 428 ~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~---~~~~l~s~~~d~~v~vwd---~~~-~~--~~~~~~h~~~v~ 498 (1012)
..+||+..+|..+.... -..-......+.|+.|+ ..++++....-+.|+.|| ..+ .. .+........|.
T Consensus 208 -~~~VW~~~~g~~~a~~t-~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siS 285 (398)
T KOG0771|consen 208 -SARVWSVNTGAALARKT-PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSIS 285 (398)
T ss_pred -ceEEEEeccCchhhhcC-CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcce
Confidence 79999999996665322 12345567788999887 322344445556777766 112 11 122222334689
Q ss_pred EEeccccCCceEEEEEecCCeEEEEEcCCCCcee-eecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeC
Q 001790 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1012)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~ 571 (1012)
+++++. +|++++.|+.||.|-+++..+.+... .-..|...|+.+.|+||.+++++.+. +....+..+
T Consensus 286 sl~VS~--dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs----~~~~~v~~l 353 (398)
T KOG0771|consen 286 SLAVSD--DGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSS----DNEAAVTKL 353 (398)
T ss_pred eEEEcC--CCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccccccc----CCceeEEEE
Confidence 999855 77999999999999999988766654 34568889999999999999998764 545555443
No 214
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=4.7e-15 Score=150.74 Aligned_cols=254 Identities=12% Similarity=0.102 Sum_probs=192.0
Q ss_pred eccCCCcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEE
Q 001790 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1012)
Q Consensus 401 ~~~~h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vw 480 (1012)
.|.+|.+.|..|.|+..|..|++|+.|..|.+||+.++.....+ ..+|...|....|.|.....-+++++.||.|++=
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f--~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF--ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc--ccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 37889999999999999999999999999999999998765532 3489999999999886554479999999999987
Q ss_pred e--CCCcce--eeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeec---CCCC---cEEEEEEccCC
Q 001790 481 E--LSGRKL--FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---APGH---WCTTMLYSADG 550 (1012)
Q Consensus 481 d--~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~---~~~~---~v~~~~~s~~~ 550 (1012)
. .++.+. ..+..|.++|..++.-|.. -..|++++.|+.+.-+|++.......+. .+.. ...+++..|..
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~s-p~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDS-PKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeccccceecceecccccCccceeeecCCC-CCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 7 455443 4556799999999987653 3578999999999999998765544332 2222 56788899977
Q ss_pred C-eEEEeeecCCCCCcEEEEeCCCCee------eeeecCC-----CCCcceEEEEecCCCEEEEEeCCCcEEEEeCCC--
Q 001790 551 S-RLFSCGTSKDGDSFLVEWNESEGTI------KRTYAGF-----RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN-- 616 (1012)
Q Consensus 551 ~-~l~~~~~~~~~~~~i~lwd~~~~~~------~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-- 616 (1012)
. .+++++ .+..+++||.+.-.. +..+..+ ....|++++|+.++.-+++...|-.|+++....
T Consensus 294 t~~faVgG----~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~ 369 (559)
T KOG1334|consen 294 TNEFAVGG----SDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGD 369 (559)
T ss_pred ccccccCC----hhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccccc
Confidence 6 566666 488899999865322 2233222 223589999998888888888898999995432
Q ss_pred C----------eeEEE-EecCCCCCCcceeEe-ecCCCEEEEEECCCcEEEEEccCC
Q 001790 617 V----------NILTS-TDAEGGLPNLPRLRF-SKEGNLLAVTTADNGFKILANAIG 661 (1012)
Q Consensus 617 ~----------~~~~~-~~~~~~~~~v~~v~~-s~~g~~l~~~~~dg~i~iwd~~~~ 661 (1012)
| ..+.. ++.|.....|..+-| -|...++++|++-|.|.||+-.++
T Consensus 370 G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ 426 (559)
T KOG1334|consen 370 GSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG 426 (559)
T ss_pred CCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh
Confidence 2 11222 555555556777765 578899999999999999998776
No 215
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.62 E-value=1.2e-12 Score=126.73 Aligned_cols=240 Identities=12% Similarity=0.159 Sum_probs=168.2
Q ss_pred ceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcC-----CCcEEEEe-
Q 001790 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-----DKLIKVWE- 481 (1012)
Q Consensus 408 ~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~-----d~~v~vwd- 481 (1012)
...+++|+.|...+++|..+| .+||+.+--+... ....+.+.+.-+...--.+.+.|+-|+. -+.|.|||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEec
Confidence 345599999999999998888 8999987532211 1112222222222222233323333332 24799999
Q ss_pred CCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCC-CCceeeecCCC--CcEEEEEEccCCCeEEEeee
Q 001790 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGSRVDYDAPG--HWCTTMLYSADGSRLFSCGT 558 (1012)
Q Consensus 482 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~-~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~ 558 (1012)
...+++.++. ...+|.++.+.. + .|++. ..+.|.+|.... .+....+.... ....+++-+.+...|+.-+.
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r--~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~ 156 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRR--D--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGF 156 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcC--C--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCC
Confidence 8888888876 567899998854 2 34443 478899998873 33343333322 22334433334444554443
Q ss_pred cCCCCCcEEEEeCCCCee--eeeecCCCCCcceEEEEecCCCEEEEEeCCCc-EEEEeCCCCeeEEEEecCCCCCCccee
Q 001790 559 SKDGDSFLVEWNESEGTI--KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ-IKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1012)
Q Consensus 559 ~~~~~~~i~lwd~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v 635 (1012)
.-|.|++-|+...+. ...+..|.. .|.+++++.+|..+++++..|+ |+|||..+|..+..+........|.++
T Consensus 157 ---k~GqvQi~dL~~~~~~~p~~I~AH~s-~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~i 232 (346)
T KOG2111|consen 157 ---KTGQVQIVDLASTKPNAPSIINAHDS-DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCI 232 (346)
T ss_pred ---ccceEEEEEhhhcCcCCceEEEcccC-ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEE
Confidence 679999999887665 356666765 8999999999999999999887 699999999999999876666789999
Q ss_pred EeecCCCEEEEEECCCcEEEEEccCC
Q 001790 636 RFSKEGNLLAVTTADNGFKILANAIG 661 (1012)
Q Consensus 636 ~~s~~g~~l~~~~~dg~i~iwd~~~~ 661 (1012)
+|||++.+||++++.|++.|+.+...
T Consensus 233 aFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 233 AFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EeCCCccEEEEEcCCCeEEEEEeecC
Confidence 99999999999999999999998764
No 216
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=9e-14 Score=155.58 Aligned_cols=235 Identities=11% Similarity=0.078 Sum_probs=161.3
Q ss_pred CCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCC---CcEEEEeCCCCeeEEEEecCCCCCCcceeEeec
Q 001790 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED---SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1012)
Q Consensus 563 ~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 639 (1012)
+..|++||..... .+.+..+.. .+...+|+|||+.|+.++.+ ..|++||+.+++........+ ....++|+|
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~-~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSP 257 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQ-PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSP 257 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCC-ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECC
Confidence 4689999986554 445555544 68889999999999887643 469999998876543333333 235789999
Q ss_pred CCCEEEEEE-CCCcEEEEEc--cCCceeeecccCCccccccCccceeeeccccccccccCCCCCccccccCCCCCCcccc
Q 001790 640 EGNLLAVTT-ADNGFKILAN--AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIIN 716 (1012)
Q Consensus 640 ~g~~l~~~~-~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1012)
||+.|+.+. .+|.+.||.+ .++. ...+
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~~--~~~l------------------------------------------------ 287 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGGT--PSQL------------------------------------------------ 287 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCCC--eEee------------------------------------------------
Confidence 999988865 5777666643 3221 0000
Q ss_pred CCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEee-ccCeeEeeeccc
Q 001790 717 GVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG-SNGVQKLWKWHR 795 (1012)
Q Consensus 717 ~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~-~dg~i~~w~~~~ 795 (1012)
.. +...+....|+|||+.|+.++ .+|..++|+++.
T Consensus 288 -----------------------------------------t~---~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 288 -----------------------------------------TS---GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA 323 (429)
T ss_pred -----------------------------------------cc---CCCCcCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 00 223456678899998777665 467888887542
Q ss_pred cccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEEEcCCcEEEEEcCCCeEEEEEcCCCCCe
Q 001790 796 NEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPAS 875 (1012)
Q Consensus 796 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~i 875 (1012)
. .+... .+ . +.. .+..|||||++|+..+...+.+||+.+++.......+ ..
T Consensus 324 ~--------------------~~~~~--~l-~--~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~~--~~ 374 (429)
T PRK01742 324 S--------------------GGGAS--LV-G--GRG--YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSSTF--LD 374 (429)
T ss_pred C--------------------CCCeE--Ee-c--CCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCCC--CC
Confidence 1 11110 01 1 222 3468999999998887556777999988765333222 23
Q ss_pred eEEEEecCCCcEEEEEeCCCeEEEEEcc--CCeEeEEecccCCCeEEEEEcCC
Q 001790 876 TFLAFHPQDNNIIAIGTEDSTIHIYNVR--VDEVKSKLKGHQKRITGLAFSTS 926 (1012)
Q Consensus 876 ~~l~~sp~d~~~las~~~dg~v~iwd~~--~~~~~~~~~~h~~~V~~l~~spd 926 (1012)
..+.|+| ++++|++++.++.+.+|++. +|+.+.++.+|.+.+..++|||-
T Consensus 375 ~~~~~sP-dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 375 ESPSISP-NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCceECC-CCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 5678999 99999999999988888863 57888889889999999999984
No 217
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.2e-12 Score=138.88 Aligned_cols=490 Identities=11% Similarity=0.150 Sum_probs=298.9
Q ss_pred CcceEEEEEccCCCEEEEEECCCeEEEEeecCCCc------------ceeeeeeeccccCeEEEEEeCCCCceEEEEEcC
Q 001790 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSND------------LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD 473 (1012)
Q Consensus 406 ~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~------------~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~ 473 (1012)
.....|++|+....++|.|+.||.++|..+.+... +..-+++.||.+.|.-+.|+...+ .+-|...
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtSDt 91 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTSDT 91 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--cccccCC
Confidence 34678999999999999999999999998865321 122346889999999999998888 7899999
Q ss_pred CCcEEEEe-CCCcceeeecC--CccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCC
Q 001790 474 DKLIKVWE-LSGRKLFNFEG--HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG 550 (1012)
Q Consensus 474 d~~v~vwd-~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~ 550 (1012)
+|.|.+|- .+|.....+.. ..+.|.+++|+. +|..+.....||.|.+=.++. ..++-....+.....+.|++|.
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~--dG~kIcIvYeDGavIVGsvdG-NRIwgKeLkg~~l~hv~ws~D~ 168 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL--DGTKICIVYEDGAVIVGSVDG-NRIWGKELKGQLLAHVLWSEDL 168 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcC--CCcEEEEEEccCCEEEEeecc-ceecchhcchheccceeecccH
Confidence 99999999 88877655543 345688888854 778898899999887765542 3343333444456688999999
Q ss_pred CeEEEeeecCCCCCcEEEEeCCCC-------eeeeeecCC-C--CCcceEEEE--------ecCCCEEEEEeCCCcEEEE
Q 001790 551 SRLFSCGTSKDGDSFLVEWNESEG-------TIKRTYAGF-R--KKSNGVVQF--------DTTQNHFLAVGEDSQIKFW 612 (1012)
Q Consensus 551 ~~l~~~~~~~~~~~~i~lwd~~~~-------~~~~~~~~~-~--~~~v~~~~~--------s~~~~~l~~~~~dg~i~iw 612 (1012)
+.++.+- ..|.+.+||.+.. .+.....+. . ...+..+.| -|+...++++-.+|.+.+.
T Consensus 169 ~~~Lf~~----ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiM 244 (1189)
T KOG2041|consen 169 EQALFKK----ANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIM 244 (1189)
T ss_pred HHHHhhh----cCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhh
Confidence 9888776 3788999986532 111111110 0 012333333 3588899999999999998
Q ss_pred eCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceee-ecccccc
Q 001790 613 DMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVA-LKVSASS 691 (1012)
Q Consensus 613 d~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~-~s~~g~~ 691 (1012)
.-.+......+... ..+..+.|+++|..||+++.+..-.- +.. ...+. ++|-|..
T Consensus 245 R~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~-~~d--------------------~n~v~Fysp~G~i 300 (1189)
T KOG2041|consen 245 RSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADE-PTD--------------------SNKVHFYSPYGHI 300 (1189)
T ss_pred hhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccccC-ccc--------------------cceEEEeccchhh
Confidence 76665444444432 26789999999999999987632100 000 01111 2333332
Q ss_pred ccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEE
Q 001790 692 AVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLL 771 (1012)
Q Consensus 692 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 771 (1012)
+ ..+.. ....|++++
T Consensus 301 ~------------------------------------------------------------gtlkv-----pg~~It~ls 315 (1189)
T KOG2041|consen 301 V------------------------------------------------------------GTLKV-----PGSCITGLS 315 (1189)
T ss_pred e------------------------------------------------------------EEEec-----CCceeeeeE
Confidence 2 11111 224566666
Q ss_pred EecCcceEEEeeccCeeEeeeccccc----------cCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEee
Q 001790 772 YTNSAVGLLALGSNGVQKLWKWHRNE----------QNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK 841 (1012)
Q Consensus 772 ~s~~g~~l~~~~~dg~i~~w~~~~~~----------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 841 (1012)
|-..|-.++.+ -|+.|.+=++...- +...+.......+..||..+.+...... .+..+++++.
T Consensus 316 WEg~gLriA~A-vdsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V------~~~~~~a~~~ 388 (1189)
T KOG2041|consen 316 WEGTGLRIAIA-VDSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKTV------THFENMAFYR 388 (1189)
T ss_pred EcCCceEEEEE-ecceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhhh------cceeehheec
Confidence 65555444333 23344433332210 0112222333456678887776433322 3356778887
Q ss_pred CCCEEEEEc-CCcEEEEE-cCCCeEEEE--Ec---CC--CCCeeEE--EEecCCCcEEEEEeCCCeEEEEEccCCeE---
Q 001790 842 NDSYVMSAT-GGKISLFN-MMTFKVMTT--FM---SP--PPASTFL--AFHPQDNNIIAIGTEDSTIHIYNVRVDEV--- 907 (1012)
Q Consensus 842 dg~~la~~s-dg~i~lwd-~~~~~~~~~--~~---~~--~~~i~~l--~~sp~d~~~las~~~dg~v~iwd~~~~~~--- 907 (1012)
+--.|+.-. +|.+.-++ +++...+.. +. |. ....+.+ .|---++.+++.++.+. +.+|.....+.
T Consensus 389 ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e~-~~iWhy~~pK~~s~ 467 (1189)
T KOG2041|consen 389 EHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEER-YFIWHYVLPKFNSV 467 (1189)
T ss_pred ccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEecccc-EEEEEEeccchhhh
Confidence 766666665 56665552 222221111 11 10 1111111 12112667777777664 77887532110
Q ss_pred -----------------------------eEEecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCccccEEEecC
Q 001790 908 -----------------------------KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIP 958 (1012)
Q Consensus 908 -----------------------------~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~ 958 (1012)
.+++.|..++|.+++.| .++|..+-..|.|.-|.+.++-......+.
T Consensus 468 l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~y~~n-- 543 (1189)
T KOG2041|consen 468 LAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNSYPVN-- 543 (1189)
T ss_pred hhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeeeccccC--
Confidence 13455667888888887 568888999999999999886654433322
Q ss_pred CCCCCCCceEEEEcCCCCEEEEE-eCCeEEEEECC---CceEEEeecC---CCeeEEEe
Q 001790 959 AGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDAS---KMERIRQVGS---PHICSIIF 1010 (1012)
Q Consensus 959 ~~~~~~~v~~l~fs~d~~~l~~~-~d~~i~vwd~~---~~~~~~~~~~---~~i~~~~f 1010 (1012)
..|.+++..-+...+++. .-|.+.+.|+. +|.++.-++. ..|+++.|
T Consensus 544 -----~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~W 597 (1189)
T KOG2041|consen 544 -----PSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEW 597 (1189)
T ss_pred -----chheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhh
Confidence 567888888888887776 45677777665 4555554433 33544444
No 218
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.61 E-value=1e-09 Score=131.42 Aligned_cols=490 Identities=10% Similarity=0.100 Sum_probs=275.7
Q ss_pred CCcceEEEEEccCCCEEEEEECCCeEEEE----eecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEE
Q 001790 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLY----SYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1012)
Q Consensus 405 h~~~V~~v~~spdg~~las~~~d~~v~vw----d~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vw 480 (1012)
..+.|.++.|-++...++.+..+|.|.+. +..+.. +. ....-...|.+++||||+. .++..+.++++.+.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~m 147 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLLM 147 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEEE
Confidence 45789999999999999999999999999 444432 11 2334567899999999999 56666667777764
Q ss_pred eCCCcce------------------------eeecC------------------------CccCEEEEeccccCCceEEE
Q 001790 481 ELSGRKL------------------------FNFEG------------------------HEAPVYSICPHHKENIQFIF 512 (1012)
Q Consensus 481 d~~~~~~------------------------~~~~~------------------------h~~~v~~~~~~~~~~~~~l~ 512 (1012)
+.+-.++ ..|.| +.+.-..++| .+||.+++
T Consensus 148 t~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISW--RGDG~yFA 225 (928)
T PF04762_consen 148 TRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISW--RGDGEYFA 225 (928)
T ss_pred eccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEE--CCCCcEEE
Confidence 3211111 11111 1112233444 77899999
Q ss_pred EEec---C---CeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecC---C
Q 001790 513 STAI---D---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG---F 583 (1012)
Q Consensus 513 s~~~---d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~---~ 583 (1012)
+.+. . ..+|+|+-+ +.....-....+--.+++|.|.|++|++... ..+...|.+|. ++|..-..|.. .
T Consensus 226 Vss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~~~VvFfE-rNGLrhgeF~l~~~~ 302 (928)
T PF04762_consen 226 VSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDRHDVVFFE-RNGLRHGEFTLRFDP 302 (928)
T ss_pred EEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCCcEEEEEe-cCCcEeeeEecCCCC
Confidence 8875 2 579999754 3332222333334467899999999998875 22345667776 44444444332 2
Q ss_pred CCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeE--EEEecCCCCCCcceeEeecC-CCEEEEEECCCcEEEEEccC
Q 001790 584 RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL--TSTDAEGGLPNLPRLRFSKE-GNLLAVTTADNGFKILANAI 660 (1012)
Q Consensus 584 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~-g~~l~~~~~dg~i~iwd~~~ 660 (1012)
....+..+.|++|+..|+....|. |.+|-..+.... +.+..... ..+..+.|+|. ...|.+.+.+|.+..++..-
T Consensus 303 ~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~ 380 (928)
T PF04762_consen 303 EEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAW 380 (928)
T ss_pred CCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-CCCCceEECCCCCCEEEEEecCCcEEEEEEEE
Confidence 334688899999999999987664 999999887643 33333222 24556999994 55677777778887766532
Q ss_pred CceeeecccCCccccccCccceeeeccccccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCC
Q 001790 661 GLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKP 740 (1012)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~ 740 (1012)
. ...+...... -.++..--||. ++.+
T Consensus 381 ~-----v~~s~~~~~~---D~g~vaVIDG~----------------------------------------------~lll 406 (928)
T PF04762_consen 381 D-----VSRSPGSSPN---DNGTVAVIDGN----------------------------------------------KLLL 406 (928)
T ss_pred E-----EEecCCCCcc---CceEEEEEeCC----------------------------------------------eEEE
Confidence 1 0000000000 00111112222 2222
Q ss_pred cceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeeccCeeEeeeccccccCCCCCccccccceeeccCCCce
Q 001790 741 WQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLL 820 (1012)
Q Consensus 741 w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 820 (1012)
-.+.....+.......+. ....|.+++|++++..+++...||.+.+|.+................ ......
T Consensus 407 Tpf~~a~VPPPMs~~~l~----~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 477 (928)
T PF04762_consen 407 TPFRRAVVPPPMSSYELE----LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSS-----ISLDSM 477 (928)
T ss_pred ecccccCCCchHhceEEc----CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhh-----cccccc
Confidence 222222222222222211 34689999999999989999999999999865543211000000000 000000
Q ss_pred eeecccCCCCCCCEeEEEEeeCCCEEEEEc-C---CcEEEEEcCCCe---EEEEEcCCCCCeeEEEEecCCCcEEEEEeC
Q 001790 821 MANDVAGVNLEEAVPCIALSKNDSYVMSAT-G---GKISLFNMMTFK---VMTTFMSPPPASTFLAFHPQDNNIIAIGTE 893 (1012)
Q Consensus 821 ~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-d---g~i~lwd~~~~~---~~~~~~~~~~~i~~l~~sp~d~~~las~~~ 893 (1012)
...... .....+..++|..+..+++... + +.+.+++....+ .......-.+.+..+...+ +...++.-..
T Consensus 478 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~ 554 (928)
T PF04762_consen 478 DISDSE--LPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSP-DSGSLYIQTN 554 (928)
T ss_pred cccccc--cccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCC-CCcEEEEEEC
Confidence 000000 1345678888888887777665 3 458888874332 2233333344555555555 4444666777
Q ss_pred CCeEEEEEccCCeE-eEEecccCCCeEEEEEcCCCC---EEEEEeCCCcEEEEeCCCCCccccEEEecCCCCCCCCceEE
Q 001790 894 DSTIHIYNVRVDEV-KSKLKGHQKRITGLAFSTSLN---ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRV 969 (1012)
Q Consensus 894 dg~v~iwd~~~~~~-~~~~~~h~~~V~~l~~spdg~---~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l 969 (1012)
+|.|...+...... +..|..-...+ .+....+.. .++.-+..|.+++ ++.. +. ..++++
T Consensus 555 ~G~v~~~~~~~~~~~~~~fp~~c~~~-~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~-----la-------~~~tSF 617 (928)
T PF04762_consen 555 DGKVFQLSSDGELSQIVKFPQPCPWM-EVCQINGSEDKRVLFGLSSNGRLYA----NSRL-----LA-------SNCTSF 617 (928)
T ss_pred CCEEEEeecCCCccccccCCCCCcEE-EEEEECCccceeEEEEECCCCEEEE----CCEE-----Ee-------cCCceE
Confidence 99888766554322 22333222222 233233322 4555555565554 2221 11 345666
Q ss_pred EEcCCCCEEEE-EeCCeEEEEECC
Q 001790 970 QFNADQVRMLV-VHETQLAIYDAS 992 (1012)
Q Consensus 970 ~fs~d~~~l~~-~~d~~i~vwd~~ 992 (1012)
... +.+|+. .....+++.++.
T Consensus 618 ~v~--~~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 618 AVT--DSFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred EEE--cCEEEEEecCceEEEEECc
Confidence 553 444444 456677777776
No 219
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=1.5e-14 Score=145.31 Aligned_cols=197 Identities=15% Similarity=0.099 Sum_probs=150.8
Q ss_pred EEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCccee
Q 001790 410 SRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF 488 (1012)
Q Consensus 410 ~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~ 488 (1012)
.+++|+++|..|++|+.||++|||++.+...+. ....|.+.|.++.|+|||+ +|++-+.| ..+||+ .+|..+.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l---~e~~~~~eV~DL~FS~dgk--~lasig~d-~~~VW~~~~g~~~a 221 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL---EEIAHHAEVKDLDFSPDGK--FLASIGAD-SARVWSVNTGAALA 221 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhh---hhHhhcCccccceeCCCCc--EEEEecCC-ceEEEEeccCchhh
Confidence 789999999999999999999999987765544 4668999999999999999 89999999 999999 8887776
Q ss_pred eecC--CccCEEEEeccccCCce--EEE-EEecCCeEEEEEcCCCCc-----eeeecCCCCcEEEEEEccCCCeEEEeee
Q 001790 489 NFEG--HEAPVYSICPHHKENIQ--FIF-STAIDGKIKAWLYDTMGS-----RVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1012)
Q Consensus 489 ~~~~--h~~~v~~~~~~~~~~~~--~l~-s~~~dg~i~~wd~~~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 558 (1012)
.... -......+.|..++++. +++ ....-+.|+.||+..... ..........|+++++++||++++.++
T Consensus 222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT- 300 (398)
T KOG0771|consen 222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGT- 300 (398)
T ss_pred hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEec-
Confidence 6552 22234455555443222 222 223345666666543222 112222344799999999999999998
Q ss_pred cCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 001790 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1012)
Q Consensus 559 ~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 616 (1012)
.+|.|-+++..+.+.++..+..+...|+.+.|+|+.+++++.+.+....+..+.-
T Consensus 301 ---~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 301 ---MDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred ---cCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 4999999999999988888776666899999999999999999888888776643
No 220
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=9.2e-13 Score=129.26 Aligned_cols=282 Identities=14% Similarity=0.176 Sum_probs=186.8
Q ss_pred CceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc-CCCEEEE
Q 001790 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYVGV 423 (1012)
Q Consensus 345 ~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~las 423 (1012)
..+..++|++--- -+|++..|-.|+|||-.. +... .+-......|+|++|-| .++.|++
T Consensus 99 ~dlr~~aWhqH~~-~fava~nddvVriy~kss-t~pt------------------~Lks~sQrnvtclawRPlsaselav 158 (445)
T KOG2139|consen 99 IDLRGVAWHQHII-AFAVATNDDVVRIYDKSS-TCPT------------------KLKSVSQRNVTCLAWRPLSASELAV 158 (445)
T ss_pred cceeeEeechhhh-hhhhhccCcEEEEeccCC-CCCc------------------eecchhhcceeEEEeccCCcceeee
Confidence 4688899998544 477888999999999665 2211 01112356899999999 4567888
Q ss_pred EECCCeEEEEeecCCCcc-e----------eeeeeeccccCeEEEEEeCCCCceEEEEEcC-CCcEEEEe-CCCcceeee
Q 001790 424 AFTKHLIQLYSYAGSNDL-R----------QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-DKLIKVWE-LSGRKLFNF 490 (1012)
Q Consensus 424 ~~~d~~v~vwd~~~~~~~-~----------~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~-d~~v~vwd-~~~~~~~~~ 490 (1012)
|+..| |.+|........ + +.....+| .+|+++.|.+||. .+++++. |..|.||| .+|..+.-.
T Consensus 159 gCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL~ 234 (445)
T KOG2139|consen 159 GCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPLI 234 (445)
T ss_pred eecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCccccc
Confidence 88777 999986532111 1 11123345 6899999999999 6777775 56899999 666665444
Q ss_pred cCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEe
Q 001790 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (1012)
Q Consensus 491 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd 570 (1012)
...-+.+.-+.|+| |+++|++++-|+..++|+....-.........+.|...+|+|+|++|+.... +.-++|.
T Consensus 235 ~~glgg~slLkwSP--dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-----gsp~lys 307 (445)
T KOG2139|consen 235 PKGLGGFSLLKWSP--DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-----GSPRLYS 307 (445)
T ss_pred ccCCCceeeEEEcC--CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-----CCceEEE
Confidence 34556788889977 6679999999999999965443333334444558999999999999887663 2223333
Q ss_pred CCC----Ce-----------eeeee------cC--CCCCcceEEEEecCCCEEEEEeCC--------CcEEEEeCCCCee
Q 001790 571 ESE----GT-----------IKRTY------AG--FRKKSNGVVQFDTTQNHFLAVGED--------SQIKFWDMDNVNI 619 (1012)
Q Consensus 571 ~~~----~~-----------~~~~~------~~--~~~~~v~~~~~s~~~~~l~~~~~d--------g~i~iwd~~~~~~ 619 (1012)
+.- +. ++..+ .+ .-.+.+.+++|.|.|.++++.-.. +.|.+||....-.
T Consensus 308 l~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~ 387 (445)
T KOG2139|consen 308 LTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPP 387 (445)
T ss_pred EeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCc
Confidence 211 00 01111 01 012357789999999999986533 3467788766544
Q ss_pred EEEE--ecCCCCCCcceeEeec---CCCEEEEEECCCcEEEEEc
Q 001790 620 LTST--DAEGGLPNLPRLRFSK---EGNLLAVTTADNGFKILAN 658 (1012)
Q Consensus 620 ~~~~--~~~~~~~~v~~v~~s~---~g~~l~~~~~dg~i~iwd~ 658 (1012)
+... ...++. ....+.|+| +|.+|.++-..|.+.-|++
T Consensus 388 vels~cg~i~ge-~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 388 VELSYCGMIGGE-YPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred eEEEecccccCC-CCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 4333 111222 245677777 6788888888888887775
No 221
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.59 E-value=5.8e-14 Score=144.60 Aligned_cols=118 Identities=22% Similarity=0.402 Sum_probs=105.4
Q ss_pred CCCEeEEEEeeCCCEEEEEc-CCcEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeE
Q 001790 831 EEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS 909 (1012)
Q Consensus 831 ~~~v~~~~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~ 909 (1012)
...|...+|||||++||+.+ ||.++|||..+.+++..++.--+...|++||| ||+|||+|++|.-|.||.+...+.+.
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVA 368 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEE
Confidence 44688899999999999999 99999999999988888887888999999999 99999999999999999999999999
Q ss_pred EecccCCCeEEEEEcC-------------------------------C----C-------------CEEEEEeCCCcEEE
Q 001790 910 KLKGHQKRITGLAFST-------------------------------S----L-------------NILVSSGADAQLCV 941 (1012)
Q Consensus 910 ~~~~h~~~V~~l~~sp-------------------------------d----g-------------~~l~s~s~Dg~i~v 941 (1012)
.=.||.+.|..|+|.| + + -++.+++.|-.+.+
T Consensus 369 RGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcL 448 (636)
T KOG2394|consen 369 RGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCL 448 (636)
T ss_pred eccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEE
Confidence 9999999999999982 0 1 15778899999999
Q ss_pred EeCCCCCc
Q 001790 942 WSIDTWEK 949 (1012)
Q Consensus 942 wd~~~~~~ 949 (1012)
||+.....
T Consensus 449 WDlteD~L 456 (636)
T KOG2394|consen 449 WDLTEDVL 456 (636)
T ss_pred Eecchhhc
Confidence 99976443
No 222
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=8.4e-15 Score=158.53 Aligned_cols=258 Identities=15% Similarity=0.169 Sum_probs=173.2
Q ss_pred eec-CCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCC
Q 001790 340 SLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1012)
Q Consensus 340 ~~~-h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 418 (1012)
+|. |...-+|++||-+.+ .|+.|+..|.|+++++.+|....+ ..+|.++|+-+.-|.||
T Consensus 1096 ~frd~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~e~s-------------------~ncH~SavT~vePs~dg 1155 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSMEES-------------------VNCHQSAVTLVEPSVDG 1155 (1516)
T ss_pred hhhccccceeeEEeecCCc-eEEeeeccceEEEEEccCcccccc-------------------ccccccccccccccCCc
Confidence 444 778999999999988 599999999999999999987754 66799999999999999
Q ss_pred CEEEEEECCC--eEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeee-cC--
Q 001790 419 NYVGVAFTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-EG-- 492 (1012)
Q Consensus 419 ~~las~~~d~--~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~-~~-- 492 (1012)
..+++.+.-. ...+|++.+-- ...+++. .-.++.|+.... .-+.|.....+.+|| .++.++.++ .+
T Consensus 1156 s~~Ltsss~S~PlsaLW~~~s~~--~~~Hsf~----ed~~vkFsn~~q--~r~~gt~~d~a~~YDvqT~~~l~tylt~~~ 1227 (1516)
T KOG1832|consen 1156 STQLTSSSSSSPLSALWDASSTG--GPRHSFD----EDKAVKFSNSLQ--FRALGTEADDALLYDVQTCSPLQTYLTDTV 1227 (1516)
T ss_pred ceeeeeccccCchHHHhcccccc--Ccccccc----ccceeehhhhHH--HHHhcccccceEEEecccCcHHHHhcCcch
Confidence 9888766543 47899987622 1111222 346788987755 334444456788999 888887763 22
Q ss_pred -CccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeC
Q 001790 493 -HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1012)
Q Consensus 493 -h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~ 571 (1012)
..-.-++..|+|.. .+++ .||. +||++....+..+..-.. --.-.|+|.|..++..+ .|||+
T Consensus 1228 ~~~y~~n~a~FsP~D--~LIl---ndGv--LWDvR~~~aIh~FD~ft~-~~~G~FHP~g~eVIINS---------EIwD~ 1290 (1516)
T KOG1832|consen 1228 TSSYSNNLAHFSPCD--TLIL---NDGV--LWDVRIPEAIHRFDQFTD-YGGGGFHPSGNEVIINS---------EIWDM 1290 (1516)
T ss_pred hhhhhccccccCCCc--ceEe---eCce--eeeeccHHHHhhhhhhee-cccccccCCCceEEeec---------hhhhh
Confidence 11222555676643 4444 3554 599988766655443331 12235899999998875 47999
Q ss_pred CCCeeeeeecCCCCCcceEEEEecCCCEEEEEe--CC---------------CcEEEEeCCCCeeEEEEecCCCCCCcce
Q 001790 572 SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG--ED---------------SQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1012)
Q Consensus 572 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d---------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1012)
++.+.++....... ..+.|+..|+.++..- .| ...+-++......+.++.... .+..
T Consensus 1291 RTF~lLh~VP~Ldq---c~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R---~~~D 1364 (1516)
T KOG1832|consen 1291 RTFKLLHSVPSLDQ---CAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDR---CLLD 1364 (1516)
T ss_pred HHHHHHhcCccccc---eEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeeccc---chhh
Confidence 99988877765533 4577888887665543 00 123445555555666665433 4566
Q ss_pred eEeecCCCEEEEEE
Q 001790 635 LRFSKEGNLLAVTT 648 (1012)
Q Consensus 635 v~~s~~g~~l~~~~ 648 (1012)
++-+|...++++..
T Consensus 1365 lct~~~D~~l~vIe 1378 (1516)
T KOG1832|consen 1365 LCTEPTDSFLGVIE 1378 (1516)
T ss_pred hhcCCccceEEEEe
Confidence 66667666666543
No 223
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=3e-14 Score=146.66 Aligned_cols=240 Identities=14% Similarity=0.142 Sum_probs=165.4
Q ss_pred ecCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc--CC
Q 001790 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DG 418 (1012)
Q Consensus 341 ~~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg 418 (1012)
.+|.+.|+|++|+.||. +|++|+.|-.+.|||.-..+.++ .+-+||...|.|+.|-| +.
T Consensus 47 ~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllh------------------sI~TgHtaNIFsvKFvP~tnn 107 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLH------------------SISTGHTANIFSVKFVPYTNN 107 (758)
T ss_pred ccccceecceeecCCCC-EEeecCCcceEEeecchhcceee------------------eeecccccceeEEeeeccCCC
Confidence 46999999999999999 89999999999999998666654 34678999999999999 67
Q ss_pred CEEEEEECCCeEEEEeecCCC-------cceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCC-ccee-
Q 001790 419 NYVGVAFTKHLIQLYSYAGSN-------DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLF- 488 (1012)
Q Consensus 419 ~~las~~~d~~v~vwd~~~~~-------~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~-~~~~- 488 (1012)
+.+++|..|..|+++|+...+ ...+...+..|...|..++-.|++.+ .+.++++||+|+-+| ... .+-.
T Consensus 108 riv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph~c~p~ 186 (758)
T KOG1310|consen 108 RIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPHVCNPD 186 (758)
T ss_pred eEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCccCCcc
Confidence 889999999999999998522 12223346689999999999999966 899999999999999 331 1111
Q ss_pred --------eecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeec-----CCCCcEEEEE-EccCCCeEE
Q 001790 489 --------NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-----APGHWCTTML-YSADGSRLF 554 (1012)
Q Consensus 489 --------~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-----~~~~~v~~~~-~s~~~~~l~ 554 (1012)
.+...--...++.++|... .+|+.|+.|-..++||.+.......-. .......++. |+|.+-
T Consensus 187 ~~~~~~l~ny~~~lielk~ltisp~rp-~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl--- 262 (758)
T KOG1310|consen 187 EDCPSILVNYNPQLIELKCLTISPSRP-YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL--- 262 (758)
T ss_pred ccccHHHHHhchhhheeeeeeecCCCC-ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc---
Confidence 1111223466788887744 799999999999999964321111000 0011111121 222211
Q ss_pred EeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEe
Q 001790 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624 (1012)
Q Consensus 555 ~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1012)
.. .++.+. +.-..++-++|+|+|..|++.-..-.|+++|+..++....+.
T Consensus 263 -kn----~~gn~~---------------~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 263 -KN----SQGNLD---------------RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred -cC----cccccc---------------cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence 00 011110 000135668999999887776666689999998887665543
No 224
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.57 E-value=5.4e-12 Score=122.22 Aligned_cols=239 Identities=15% Similarity=0.222 Sum_probs=155.3
Q ss_pred cEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEE-EeC------CCcEEEE
Q 001790 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLA-VGE------DSQIKFW 612 (1012)
Q Consensus 540 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~------dg~i~iw 612 (1012)
...+++|+.|...++++. +...++|+..--+.......+.. .+..+.+--..++++. ||. -+.|.||
T Consensus 7 ~~lsvs~NQD~ScFava~-----~~Gfriyn~~P~ke~~~r~~~~~-G~~~veMLfR~N~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVAT-----DTGFRIYNCDPFKESASRQFIDG-GFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred ceeEEEEccCCceEEEEe-----cCceEEEecCchhhhhhhccccC-chhhhhHhhhhceEEEecCCCCCCCCCceEEEE
Confidence 345689999999888886 66689998765322211111111 1222222222345544 332 3579999
Q ss_pred eCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeeccccccc
Q 001790 613 DMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSA 692 (1012)
Q Consensus 613 d~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l 692 (1012)
|=...+++.++.... +|.++.+.++ .+++.- .+.|.+|...+..+....+.... .|.|
T Consensus 81 DD~k~~~i~el~f~~---~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~-------------NPkG--- 138 (346)
T KOG2111|consen 81 DDLKERCIIELSFNS---EIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRS-------------NPKG--- 138 (346)
T ss_pred ecccCcEEEEEEecc---ceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeeccc-------------CCCc---
Confidence 977778888887644 7899999776 455544 56999999886544443332211 0111
Q ss_pred cccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEE
Q 001790 693 VSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLY 772 (1012)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 772 (1012)
..+++-
T Consensus 139 --------------------------------------------------------------------------lC~~~~ 144 (346)
T KOG2111|consen 139 --------------------------------------------------------------------------LCSLCP 144 (346)
T ss_pred --------------------------------------------------------------------------eEeecC
Confidence 111111
Q ss_pred ecCcceEEEee-ccCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEEEc-
Q 001790 773 TNSAVGLLALG-SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT- 850 (1012)
Q Consensus 773 s~~g~~l~~~~-~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s- 850 (1012)
+.+...|+.-| .-|.|++-|+......+ ...+.. |...|.|++++.+|..+|+++
T Consensus 145 ~~~k~~LafPg~k~GqvQi~dL~~~~~~~---------------------p~~I~A--H~s~Iacv~Ln~~Gt~vATaSt 201 (346)
T KOG2111|consen 145 TSNKSLLAFPGFKTGQVQIVDLASTKPNA---------------------PSIINA--HDSDIACVALNLQGTLVATAST 201 (346)
T ss_pred CCCceEEEcCCCccceEEEEEhhhcCcCC---------------------ceEEEc--ccCceeEEEEcCCccEEEEecc
Confidence 11222233333 24777777665432210 011222 999999999999999999999
Q ss_pred CCc-EEEEEcCCCeEEEEEcCCC--CCeeEEEEecCCCcEEEEEeCCCeEEEEEccC
Q 001790 851 GGK-ISLFNMMTFKVMTTFMSPP--PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 904 (1012)
Q Consensus 851 dg~-i~lwd~~~~~~~~~~~~~~--~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~ 904 (1012)
.|+ |+|||..+|+.+.+++... ..|.+|+||| +..+||++|+.|+|+|+.+..
T Consensus 202 kGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 202 KGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC-CccEEEEEcCCCeEEEEEeec
Confidence 787 9999999999999987433 4699999999 999999999999999999875
No 225
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=1.3e-12 Score=128.15 Aligned_cols=306 Identities=12% Similarity=0.160 Sum_probs=196.0
Q ss_pred cEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCC--
Q 001790 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV-- 617 (1012)
Q Consensus 540 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-- 617 (1012)
.+..++|++.-..++++. .|..|++||-.. +....++...+..+++++|-|.+...++.+-.+.|.+|.....
T Consensus 100 dlr~~aWhqH~~~fava~----nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln 174 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVAT----NDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLN 174 (445)
T ss_pred ceeeEeechhhhhhhhhc----cCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccc
Confidence 467788888666666666 588999999776 6666666666668999999997755444444567999976431
Q ss_pred --e--------eEEEEecCCCCCCcceeEeecCCCEEEEEEC-CCcEEEEEccCCceeeecccCCccccccCccceeeec
Q 001790 618 --N--------ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA-DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALK 686 (1012)
Q Consensus 618 --~--------~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s 686 (1012)
. ....+...++ .+|++++|.+||..+++++. +..|.|||..++....-.
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~------------------- 234 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI------------------- 234 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc-------------------
Confidence 1 1233444455 48999999999999999886 678999999876211100
Q ss_pred cccccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCc
Q 001790 687 VSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSK 766 (1012)
Q Consensus 687 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (1012)
| . ..+.
T Consensus 235 ------------------------------------------------------~-----------------~---glgg 240 (445)
T KOG2139|consen 235 ------------------------------------------------------P-----------------K---GLGG 240 (445)
T ss_pred ------------------------------------------------------c-----------------c---CCCc
Confidence 0 0 3345
Q ss_pred eEEEEEecCcceEEEeeccCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEE
Q 001790 767 VVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYV 846 (1012)
Q Consensus 767 i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 846 (1012)
+.-+.|||||.+++++.-|+..++|+....- +..-|-. ..+.|...+|+|+|++|
T Consensus 241 ~slLkwSPdgd~lfaAt~davfrlw~e~q~w-----------t~erw~l--------------gsgrvqtacWspcGsfL 295 (445)
T KOG2139|consen 241 FSLLKWSPDGDVLFAATCDAVFRLWQENQSW-----------TKERWIL--------------GSGRVQTACWSPCGSFL 295 (445)
T ss_pred eeeEEEcCCCCEEEEecccceeeeehhcccc-----------eecceec--------------cCCceeeeeecCCCCEE
Confidence 6778999999999999999999999643211 0111111 34478899999999999
Q ss_pred EEEcCCcEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeEEecccCCCeEEEEEcCC
Q 001790 847 MSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTS 926 (1012)
Q Consensus 847 a~~sdg~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spd 926 (1012)
..+..|.-++|.+. |...++...-.++.....-+-|+..-....--+---+++.+++|.|.
T Consensus 296 Lf~~sgsp~lysl~-------------------f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDps 356 (445)
T KOG2139|consen 296 LFACSGSPRLYSLT-------------------FDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPS 356 (445)
T ss_pred EEEEcCCceEEEEe-------------------ecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCC
Confidence 87776666666542 22111111111222222333343311100000112467889999999
Q ss_pred CCEEEEEeCCC--------cEEEEeCCCCCccccEEEecCCCCCCCCceEEEEcC---CCCEEEEE-eCCeEEEEEC
Q 001790 927 LNILVSSGADA--------QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNA---DQVRMLVV-HETQLAIYDA 991 (1012)
Q Consensus 927 g~~l~s~s~Dg--------~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~---d~~~l~~~-~d~~i~vwd~ 991 (1012)
|.+||+.-..+ .|.+||....-...........+.. ...++|.| +|.+|.++ +.|.+.-|++
T Consensus 357 GeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~---P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 357 GEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEY---PAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred CCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCC---CceEEeeecccCCcEEEEEeccCceEeeee
Confidence 99999876543 3677887664443333334444433 35677776 67888888 7888888775
No 226
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=3.7e-12 Score=132.77 Aligned_cols=335 Identities=13% Similarity=0.141 Sum_probs=212.0
Q ss_pred CCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEe-----C-----CC
Q 001790 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-----E-----DS 607 (1012)
Q Consensus 538 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~-----dg 607 (1012)
..++...+++++|++++.+. +..+.|++..++..+.+.... .+..+-|+|.+.++.+-- . .-
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-----~~~v~i~~~~~~~~~lt~~~~---~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~p 105 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-----NQVVKVFEIATLKVVLCVELK---KTYDLLFSPKGNYLLTWEPWAIYGPKNASNP 105 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-----CCeEEEEEccCCcEEEEeccc---eeeeeeecccccccccccccccccCCCCCCC
Confidence 34578889999999999885 778999999888644444333 467899999999887621 1 24
Q ss_pred cEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeecc
Q 001790 608 QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKV 687 (1012)
Q Consensus 608 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~ 687 (1012)
.+.+|+.+++.....+...... -++..|+.|..+.|- -..+.+.+|++.+...... ..+...+..+.+||
T Consensus 106 n~~v~~vet~~~~s~~q~k~Q~--~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~~-------kl~~~~i~~f~lSp 175 (566)
T KOG2315|consen 106 NVLVYNVETGVQRSQIQKKMQN--GWVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQH-------KLSVSGITMLSLSP 175 (566)
T ss_pred ceeeeeeccceehhheehhhhc--Ccccccccchhhhhh-hhcceEEEEecCCccceee-------eeeccceeeEEecC
Confidence 5789999997666666554432 268899998754433 3356899999876432222 23345577778887
Q ss_pred cccc-ccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCc
Q 001790 688 SASS-AVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSK 766 (1012)
Q Consensus 688 ~g~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (1012)
.+.- .++.+-+. ..+.-..+++|.............-++ ....
T Consensus 176 gp~~~~vAvyvPe-------------------------------~kGaPa~vri~~~~~~~~~~~~a~ksF-----Fkad 219 (566)
T KOG2315|consen 176 GPEPPFVAVYVPE-------------------------------KKGAPASVRIYKYPEEGQHQPVANKSF-----FKAD 219 (566)
T ss_pred CCCCceEEEEccC-------------------------------CCCCCcEEEEeccccccccchhhhccc-----cccc
Confidence 6332 22111111 122335566666542111111110000 1122
Q ss_pred eEEEEEecCcceEEEeeccCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEE
Q 001790 767 VVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYV 846 (1012)
Q Consensus 767 i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 846 (1012)
-..+.|++-|.-|++.... |++....+.-| +.++.+.+.. |......+. ..++|.++.|+++|+-+
T Consensus 220 kvqm~WN~~gt~LLvLast------dVDktn~SYYG----Eq~Lyll~t~-g~s~~V~L~---k~GPVhdv~W~~s~~EF 285 (566)
T KOG2315|consen 220 KVQMKWNKLGTALLVLAST------DVDKTNASYYG----EQTLYLLATQ-GESVSVPLL---KEGPVHDVTWSPSGREF 285 (566)
T ss_pred eeEEEeccCCceEEEEEEE------eecCCCccccc----cceEEEEEec-CceEEEecC---CCCCceEEEECCCCCEE
Confidence 3446667666644332221 12211111111 1123333443 333333333 47899999999999888
Q ss_pred EEEc---CCcEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEEeC---CCeEEEEEccCCeEeEEecccCCCeEE
Q 001790 847 MSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE---DSTIHIYNVRVDEVKSKLKGHQKRITG 920 (1012)
Q Consensus 847 a~~s---dg~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~~---dg~v~iwd~~~~~~~~~~~~h~~~V~~ 920 (1012)
+++. -.++.|||+ .++++..+ ..++-+++-|+| .|++|+.++- -|.+.|||+.+.+++..+..-. -+-
T Consensus 286 ~VvyGfMPAkvtifnl-r~~~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~ 359 (566)
T KOG2315|consen 286 AVVYGFMPAKVTIFNL-RGKPVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTV 359 (566)
T ss_pred EEEEecccceEEEEcC-CCCEeEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceE
Confidence 7664 478999998 45665555 456778999999 8988888774 4699999999999988887543 355
Q ss_pred EEEcCCCCEEEEEeC------CCcEEEEeCCC
Q 001790 921 LAFSTSLNILVSSGA------DAQLCVWSIDT 946 (1012)
Q Consensus 921 l~~spdg~~l~s~s~------Dg~i~vwd~~~ 946 (1012)
..|+|||.+++|++. |+.++||++..
T Consensus 360 ~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 360 FEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred EEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 799999999998865 68899999975
No 227
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1.3e-12 Score=145.83 Aligned_cols=223 Identities=11% Similarity=0.095 Sum_probs=145.7
Q ss_pred ccCCCcceEEEEEccCCCEEEEEEC---CCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCC--c
Q 001790 402 FKDVPISVSRVAWSPDGNYVGVAFT---KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--L 476 (1012)
Q Consensus 402 ~~~h~~~V~~v~~spdg~~las~~~---d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~--~ 476 (1012)
+..+...+.+.+|||||+.||..+. +..|.+|++.+|+... +....+.+...+|+|||+.+ +++.+.+| .
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~----l~~~~~~~~~~~~SPDG~~L-a~~~~~~g~~~ 268 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ----VASFPRHNGAPAFSPDGSKL-AFALSKTGSLN 268 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ccCCCCCcCCeEECCCCCEE-EEEEcCCCCcE
Confidence 4446778999999999999987643 3569999998876432 22233345578999999952 23334454 5
Q ss_pred EEEEeCCCcceeeecCCccCEEEEeccccCCceEEEEEec-CCeEEEE--EcCCCCceeeecCCCCcEEEEEEccCCCeE
Q 001790 477 IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DGKIKAW--LYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1012)
Q Consensus 477 v~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~~w--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 553 (1012)
|++||..+..+..+..+...+....|+| ||+.|+..+. ++...+| |++++.. ..+...........|+|||+++
T Consensus 269 I~~~d~~tg~~~~lt~~~~~~~~~~wSP--DG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~I 345 (429)
T PRK03629 269 LYVMDLASGQIRQVTDGRSNNTEPTWFP--DSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFM 345 (429)
T ss_pred EEEEECCCCCEEEccCCCCCcCceEECC--CCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEE
Confidence 8889944434455555555677778866 5666766554 4555555 5554433 2333344456678999999999
Q ss_pred EEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCc---EEEEeCCCCeeEEEEecCCCCC
Q 001790 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ---IKFWDMDNVNILTSTDAEGGLP 630 (1012)
Q Consensus 554 ~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~ 630 (1012)
+..+.. ++...|.+||+.+++... +.... ......|+|||++|+.++.++. ++++++. +.....+..+ ..
T Consensus 346 a~~~~~-~g~~~I~~~dl~~g~~~~-Lt~~~--~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~--~~ 418 (429)
T PRK03629 346 VMVSSN-GGQQHIAKQDLATGGVQV-LTDTF--LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPAT--DG 418 (429)
T ss_pred EEEEcc-CCCceEEEEECCCCCeEE-eCCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccC--CC
Confidence 887642 234578999998886543 33211 2345789999999999887654 6777874 4444555432 33
Q ss_pred CcceeEeec
Q 001790 631 NLPRLRFSK 639 (1012)
Q Consensus 631 ~v~~v~~s~ 639 (1012)
.+...+|+|
T Consensus 419 ~~~~p~Wsp 427 (429)
T PRK03629 419 QVKFPAWSP 427 (429)
T ss_pred CcCCcccCC
Confidence 678888887
No 228
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.56 E-value=4.3e-10 Score=114.57 Aligned_cols=404 Identities=13% Similarity=0.106 Sum_probs=226.3
Q ss_pred cccCCCCCccceEeecCCCceEEEEEecCCCcEEEE----e--cCCCeEEEEEccCCceecccccccccccccCccccce
Q 001790 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLV----G--SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQAS 400 (1012)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~llas----g--~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1012)
+|...-......+...|-+-|+...|+|||+.++.+ | ...+-+.+.+.+.|+...- .
T Consensus 61 lWe~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRi-----------------T 123 (668)
T COG4946 61 LWEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRI-----------------T 123 (668)
T ss_pred HHHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEE-----------------E
Confidence 666666667777888899999999999999965442 2 2234566667677765421 1
Q ss_pred eccCCCcceEE-EEEccCCCEEEEEECCCe----EEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCC
Q 001790 401 IFKDVPISVSR-VAWSPDGNYVGVAFTKHL----IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1012)
Q Consensus 401 ~~~~h~~~V~~-v~~spdg~~las~~~d~~----v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~ 475 (1012)
.+ | ...+. +-|+|||+.|++...-.- -.+|.+..... . .-.-.-++.+.+.+- ||. ++.|-.--
T Consensus 124 yf-G--r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~-~---~e~LnlGpathiv~~-dg~---ivigRnty 192 (668)
T COG4946 124 YF-G--RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGI-K---TEPLNLGPATHIVIK-DGI---IVIGRNTY 192 (668)
T ss_pred Ee-c--cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCc-e---eeeccCCceeeEEEe-CCE---EEEccCcc
Confidence 12 2 23333 469999999988754322 23343332111 0 001123445555553 443 33332111
Q ss_pred ------------cEEEEe--CCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcE
Q 001790 476 ------------LIKVWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWC 541 (1012)
Q Consensus 476 ------------~v~vwd--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v 541 (1012)
.=++|- ..|+....+-...+.|.+-.+- .+...+....+|.=.+|..+-...-......-..-
T Consensus 193 dLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV---~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdY 269 (668)
T COG4946 193 DLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIV---GERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDY 269 (668)
T ss_pred cCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEE---cceEEEEecccCccceEEeccCCchhhhcCCchhc
Confidence 123555 2332333332222223221111 11233344455554455443322221111111122
Q ss_pred EEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecC---C--CCCc--ceE---E-EEec-CCCEEEEEeCCCcE
Q 001790 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG---F--RKKS--NGV---V-QFDT-TQNHFLAVGEDSQI 609 (1012)
Q Consensus 542 ~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~---~--~~~~--v~~---~-~~s~-~~~~l~~~~~dg~i 609 (1012)
.+=..+.||+.++... .|.|++||..+....+.--+ . .... +.- + .|++ +|.+++..+ .|..
T Consensus 270 Y~R~~nsDGkrIvFq~-----~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGka 343 (668)
T COG4946 270 YPRNANSDGKRIVFQN-----AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKA 343 (668)
T ss_pred cccccCCCCcEEEEec-----CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcE
Confidence 2333467999998874 67799999887654432211 1 0000 111 1 1332 466776665 4677
Q ss_pred EEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCC-cEEEEEccCCceeeecccCCccccccCccceeeeccc
Q 001790 610 KFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN-GFKILANAIGLRSLRAVENPPFEALRTPIESVALKVS 688 (1012)
Q Consensus 610 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~ 688 (1012)
.+.+...+-.++.-. ...|.-..+..+++-++.|..|| .+-|+|..++.... +.
T Consensus 344 Fi~~~~~~~~iqv~~----~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr--~e------------------- 398 (668)
T COG4946 344 FIMRPWDGYSIQVGK----KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR--IE------------------- 398 (668)
T ss_pred EEECCCCCeeEEcCC----CCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE--ee-------------------
Confidence 787766655444322 22466667777778899999998 88899887762110 00
Q ss_pred cccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceE
Q 001790 689 ASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVV 768 (1012)
Q Consensus 689 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~ 768 (1012)
..-+.|.
T Consensus 399 -------------------------------------------------------------------------~~lg~I~ 405 (668)
T COG4946 399 -------------------------------------------------------------------------KDLGNIE 405 (668)
T ss_pred -------------------------------------------------------------------------CCccceE
Confidence 0335678
Q ss_pred EEEEecCcceEEEeeccCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEE
Q 001790 769 RLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMS 848 (1012)
Q Consensus 769 ~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 848 (1012)
++..+++|+.++++.....+.+.|++++.. ....- ...+-|+.++|||+++++|-
T Consensus 406 av~vs~dGK~~vvaNdr~el~vididngnv----------------------~~idk---S~~~lItdf~~~~nsr~iAY 460 (668)
T COG4946 406 AVKVSPDGKKVVVANDRFELWVIDIDNGNV----------------------RLIDK---SEYGLITDFDWHPNSRWIAY 460 (668)
T ss_pred EEEEcCCCcEEEEEcCceEEEEEEecCCCe----------------------eEecc---cccceeEEEEEcCCceeEEE
Confidence 889999999888888877777777654321 11110 14566899999999999999
Q ss_pred Ec-CC----cEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEEe
Q 001790 849 AT-GG----KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT 892 (1012)
Q Consensus 849 ~s-dg----~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~ 892 (1012)
+- +| .|+++|+.+++....-. ....=.+-+|.| |+++|..-+
T Consensus 461 afP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~-d~ryLYfLs 507 (668)
T COG4946 461 AFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDP-DGRYLYFLS 507 (668)
T ss_pred ecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCC-CCcEEEEEe
Confidence 86 54 59999999887754432 333334567888 888776544
No 229
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=7.1e-13 Score=137.72 Aligned_cols=285 Identities=13% Similarity=0.131 Sum_probs=208.0
Q ss_pred cceEeecCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCC--CcceEEEE
Q 001790 336 TVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV--PISVSRVA 413 (1012)
Q Consensus 336 ~~~~~~~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~v~ 413 (1012)
.++.-|.|+..-+.|..||||++++|+|...-.|++||+..-.... .-| ...|.-.-
T Consensus 43 eLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKF---------------------ERhlDae~V~fei 101 (703)
T KOG2321|consen 43 ELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKF---------------------ERHLDAEVVDFEI 101 (703)
T ss_pred HHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeee---------------------eecccccceeEEE
Confidence 3455567888999999999999999999999999999997644332 223 23454555
Q ss_pred EccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecC
Q 001790 414 WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG 492 (1012)
Q Consensus 414 ~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~ 492 (1012)
.|.|-..++.-..|.+|.+..-.+ ... .+. -...-.+++++.-.-. |+.++....|+-++ ..|+.+..|..
T Consensus 102 LsDD~SK~v~L~~DR~IefHak~G-~hy----~~R-IP~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~ 173 (703)
T KOG2321|consen 102 LSDDYSKSVFLQNDRTIEFHAKYG-RHY----RTR-IPKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFET 173 (703)
T ss_pred eccchhhheEeecCceeeehhhcC-eee----eee-cCcCCccccccCCCcc--EEEeecCcceEEEEcccccccccccc
Confidence 566767777777888887654322 111 111 1222345666554442 44444456788888 89999999988
Q ss_pred CccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCC------C-----CcEEEEEEccCCCeEEEeeecCC
Q 001790 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP------G-----HWCTTMLYSADGSRLFSCGTSKD 561 (1012)
Q Consensus 493 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~------~-----~~v~~~~~s~~~~~l~~~~~~~~ 561 (1012)
..+.++++..++-. .+|++|+.+|.|.+||.+.......+... . ..|+++.|+.+|-.+++|..
T Consensus 174 ~~~~lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts--- 248 (703)
T KOG2321|consen 174 DSGELNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS--- 248 (703)
T ss_pred ccccceeeeecCcc--ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc---
Confidence 88899999887643 58999999999999999886655443321 1 25999999999999999984
Q ss_pred CCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCC--CEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeec
Q 001790 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ--NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1012)
Q Consensus 562 ~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 639 (1012)
+|.+.+||+++.+++..-......+|..+.|.+.+ +.+++ .....++|||-.+|+....+.... .++.+++-|
T Consensus 249 -~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt~---~lND~C~~p 323 (703)
T KOG2321|consen 249 -TGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPTS---DLNDFCFVP 323 (703)
T ss_pred -CCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEe-cchHHhhhcccccCCceeeccccC---CcCceeeec
Confidence 99999999999988766554444567778886653 44444 455689999999999988886543 589999999
Q ss_pred CCCEEEEEECCCcEEEEEcc
Q 001790 640 EGNLLAVTTADNGFKILANA 659 (1012)
Q Consensus 640 ~g~~l~~~~~dg~i~iwd~~ 659 (1012)
++.+++++-.++.+..|=+.
T Consensus 324 ~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 324 GSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred CCceEEEecCCCcceeEEcc
Confidence 99999999988877766544
No 230
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.54 E-value=3e-14 Score=144.07 Aligned_cols=286 Identities=15% Similarity=0.208 Sum_probs=215.9
Q ss_pred ceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEE
Q 001790 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1012)
Q Consensus 346 ~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~ 425 (1012)
....+.++.+|++ |+.|+..|.|..+|+.+++...... -...|.++.|-.+.+++|++.
T Consensus 131 GPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~--------------------v~Etv~Dv~~LHneq~~AVAQ 189 (545)
T KOG1272|consen 131 GPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEIN--------------------VMETVRDVTFLHNEQFFAVAQ 189 (545)
T ss_pred CCeeeeecCCccE-EEecCCccceeeeecccceeeeeee--------------------hhhhhhhhhhhcchHHHHhhh
Confidence 6678999999995 6677889999999999998775422 234789999999999999884
Q ss_pred CCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCCccCEEEEeccc
Q 001790 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHH 504 (1012)
Q Consensus 426 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~v~~~~~~~ 504 (1012)
...+.|||-.. ..+.+ ++.| ..|..+.|.|..- +|++++..|.++.-| ..|+.+..+....+.+..++-+|
T Consensus 190 -K~y~yvYD~~G-tElHC---lk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP 261 (545)
T KOG1272|consen 190 -KKYVYVYDNNG-TELHC---LKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP 261 (545)
T ss_pred -hceEEEecCCC-cEEee---hhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC
Confidence 45699999765 33332 3333 4589999999866 899999999999999 89999999988888888888766
Q ss_pred cCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCC
Q 001790 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584 (1012)
Q Consensus 505 ~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~ 584 (1012)
.+ ..+-+|...|+|.+|..........+..|.++|.++++.++|+++++.+. |..+.|||++.-..+.++...
T Consensus 262 ~N--aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~tp- 334 (545)
T KOG1272|consen 262 YN--AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRTP- 334 (545)
T ss_pred cc--ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeecC-
Confidence 53 58888999999999999999999999999999999999999999999995 999999999988766666552
Q ss_pred CCcceEEEEecCCCEEEEEeCCCcEEEEe-CCCC--eeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCC
Q 001790 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWD-MDNV--NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1012)
Q Consensus 585 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd-~~~~--~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~ 661 (1012)
.....+++|..| +++.+....|.||. .-.+ ..-..+-.+.....|..+.|.|-...|-+|...|.-.+.=...|
T Consensus 335 -~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsG 411 (545)
T KOG1272|consen 335 -HPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSG 411 (545)
T ss_pred -CCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCCC
Confidence 245667887654 34444455899994 3221 11111112222337899999998888888877776666544444
Q ss_pred ceeeecccC
Q 001790 662 LRSLRAVEN 670 (1012)
Q Consensus 662 ~~~~~~~~~ 670 (1012)
...+..++.
T Consensus 412 ePN~Ds~e~ 420 (545)
T KOG1272|consen 412 EPNYDSLED 420 (545)
T ss_pred CCCcchhcc
Confidence 433333333
No 231
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=2.9e-12 Score=144.11 Aligned_cols=223 Identities=12% Similarity=0.035 Sum_probs=151.5
Q ss_pred ccCCCcceEEEEEccCCCEEEEEEC---CCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCc--
Q 001790 402 FKDVPISVSRVAWSPDGNYVGVAFT---KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL-- 476 (1012)
Q Consensus 402 ~~~h~~~V~~v~~spdg~~las~~~---d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~-- 476 (1012)
+..|...+.+.+|||||+.|+..+. +..|.+||+.+++.. .+..+.+.+.+.+|+|||+. ++++.+.++.
T Consensus 197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~----~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 271 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE----LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTD 271 (435)
T ss_pred EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE----EeecCCCcccCcEECCCCCE-EEEEEecCCCce
Confidence 5568889999999999999998764 467999999987643 25556777889999999995 3445666665
Q ss_pred EEEEeCCCcceeeecCCccCEEEEeccccCCceEEEEEe-cCC--eEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeE
Q 001790 477 IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1012)
Q Consensus 477 v~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 553 (1012)
|.+||..+.....+..+........|++ ||+.++..+ .+| .|.+||++.+... .+......+....|+|||+.|
T Consensus 272 Iy~~d~~~~~~~~Lt~~~~~~~~~~~sp--DG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~i 348 (435)
T PRK05137 272 IYTMDLRSGTTTRLTDSPAIDTSPSYSP--DGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDLI 348 (435)
T ss_pred EEEEECCCCceEEccCCCCccCceeEcC--CCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCCEE
Confidence 7777855555566776666666778866 566666655 333 5777787654433 333334456678899999999
Q ss_pred EEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCC------CcEEEEeCCCCeeEEEEecCC
Q 001790 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED------SQIKFWDMDNVNILTSTDAEG 627 (1012)
Q Consensus 554 ~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~ 627 (1012)
+...... +...|.+||..++.. +.+... ..+....|+|||+.|+..+.+ ..++++|+..+.. ..+...+
T Consensus 349 a~~~~~~-~~~~i~~~d~~~~~~-~~lt~~--~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~ 423 (435)
T PRK05137 349 AFTKQGG-GQFSIGVMKPDGSGE-RILTSG--FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPG 423 (435)
T ss_pred EEEEcCC-CceEEEEEECCCCce-EeccCC--CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCCC
Confidence 8876421 245788999865543 333221 145678999999998876542 3688888876654 3443222
Q ss_pred CCCCcceeEeecC
Q 001790 628 GLPNLPRLRFSKE 640 (1012)
Q Consensus 628 ~~~~v~~v~~s~~ 640 (1012)
.+...+|+|-
T Consensus 424 ---~~~~p~Wsp~ 433 (435)
T PRK05137 424 ---DASDPAWSPL 433 (435)
T ss_pred ---CccCcccCCC
Confidence 3567778763
No 232
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=1.9e-12 Score=144.61 Aligned_cols=225 Identities=14% Similarity=0.134 Sum_probs=148.9
Q ss_pred ccCCCcceEEEEEccCCCEEEEEECC---CeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEE
Q 001790 402 FKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1012)
Q Consensus 402 ~~~h~~~V~~v~~spdg~~las~~~d---~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~ 478 (1012)
+..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++... +....+.+.+.+|+|||+. ++++.+.++...
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 265 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQ 265 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCce
Confidence 44577789999999999999987643 359999999886433 3334456678999999994 334667788777
Q ss_pred EEe--CCCcceeeecCCccCEEEEeccccCCceEEEEEe-cCCeEEEEEcCCCC-ceeeecCCCCcEEEEEEccCCCeEE
Q 001790 479 VWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDGKIKAWLYDTMG-SRVDYDAPGHWCTTMLYSADGSRLF 554 (1012)
Q Consensus 479 vwd--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~ 554 (1012)
+|. ..+.....+..+........|++ ||+.++..+ .+|...+|.++... ....+...........|+|||++++
T Consensus 266 Iy~~d~~~~~~~~lt~~~~~~~~~~wSp--DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 266 IYTVNADGSGLRRLTQSSGIDTEPFFSP--DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLA 343 (427)
T ss_pred EEEEECCCCCcEECCCCCCCCcCeEEcC--CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEE
Confidence 766 55555666766665566677866 566666554 45677777664322 2222222333345678999999998
Q ss_pred EeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCC---cEEEEeCCCCeeEEEEecCCCCCC
Q 001790 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS---QIKFWDMDNVNILTSTDAEGGLPN 631 (1012)
Q Consensus 555 ~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1012)
..+..+ +...|.+||+.+++........ ......|+||++.|+.++.++ .+++.+. ++.....+..+.+ .
T Consensus 344 ~~s~~~-g~~~I~v~d~~~g~~~~lt~~~---~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g--~ 416 (427)
T PRK02889 344 YISRVG-GAFKLYVQDLATGQVTALTDTT---RDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGG--D 416 (427)
T ss_pred EEEccC-CcEEEEEEECCCCCeEEccCCC---CccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCC--C
Confidence 776321 2347999999888755433221 235679999999998877543 3666666 4555555543322 5
Q ss_pred cceeEeecC
Q 001790 632 LPRLRFSKE 640 (1012)
Q Consensus 632 v~~v~~s~~ 640 (1012)
+...+|+|-
T Consensus 417 ~~~p~wsp~ 425 (427)
T PRK02889 417 VREPSWGPF 425 (427)
T ss_pred CCCCccCCC
Confidence 677788873
No 233
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.53 E-value=5.8e-14 Score=142.00 Aligned_cols=232 Identities=14% Similarity=0.164 Sum_probs=192.8
Q ss_pred cceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEeCCCcc
Q 001790 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRK 486 (1012)
Q Consensus 407 ~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd~~~~~ 486 (1012)
-.-+.+.++.+|++|+.|+..|.|..+|+.+++.... +. -...|.++.|..+.+ ++|.+. .+.++|||..|..
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~E---i~-v~Etv~Dv~~LHneq--~~AVAQ-K~y~yvYD~~GtE 202 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFE---IN-VMETVRDVTFLHNEQ--FFAVAQ-KKYVYVYDNNGTE 202 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeee---ee-hhhhhhhhhhhcchH--HHHhhh-hceEEEecCCCcE
Confidence 3456789999999999999999999999999875543 32 345689999998887 666665 6789999999999
Q ss_pred eeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcE
Q 001790 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFL 566 (1012)
Q Consensus 487 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 566 (1012)
++.++.|. .|..+.|.|.. -+|++++..|.++.-|+.+++.+..+....+.+..+.-+|-+..+-+|. ..|+|
T Consensus 203 lHClk~~~-~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Gh----snGtV 275 (545)
T KOG1272|consen 203 LHCLKRHI-RVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGH----SNGTV 275 (545)
T ss_pred EeehhhcC-chhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcC----CCceE
Confidence 99888664 58888887754 5788889999999999999999988888888999999999888887777 49999
Q ss_pred EEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEE
Q 001790 567 VEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAV 646 (1012)
Q Consensus 567 ~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~ 646 (1012)
.+|.....+++..+..|.+ +|.++++.++|.+++++|.|..++|||++....+.++..+ + +...+++|..|- ||.
T Consensus 276 SlWSP~skePLvKiLcH~g-~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp-~--~a~~ls~Sqkgl-LA~ 350 (545)
T KOG1272|consen 276 SLWSPNSKEPLVKILCHRG-PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP-H--PASNLSLSQKGL-LAL 350 (545)
T ss_pred EecCCCCcchHHHHHhcCC-CcceEEECCCCcEEeecccccceeEeeeccccccceeecC-C--Cccccccccccc-eee
Confidence 9999999999999999987 9999999999999999999999999999988766666542 2 567888887763 433
Q ss_pred EECCCcEEEEEc
Q 001790 647 TTADNGFKILAN 658 (1012)
Q Consensus 647 ~~~dg~i~iwd~ 658 (1012)
+....+.||.-
T Consensus 351 -~~G~~v~iw~d 361 (545)
T KOG1272|consen 351 -SYGDHVQIWKD 361 (545)
T ss_pred -ecCCeeeeehh
Confidence 44458899953
No 234
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=2.7e-12 Score=144.10 Aligned_cols=223 Identities=16% Similarity=0.143 Sum_probs=147.0
Q ss_pred ccCCCcceEEEEEccCCCEEEEEECC---CeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCC--c
Q 001790 402 FKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--L 476 (1012)
Q Consensus 402 ~~~h~~~V~~v~~spdg~~las~~~d---~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~--~ 476 (1012)
+..|...+.+.+|||||+.|+..+.+ ..|.+||+.+++... +..+.+...+.+|+|||+. ++++.+.+| .
T Consensus 199 lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~----l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~ 273 (433)
T PRK04922 199 ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL----VASFRGINGAPSFSPDGRR-LALTLSRDGNPE 273 (433)
T ss_pred eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE----eccCCCCccCceECCCCCE-EEEEEeCCCCce
Confidence 45577789999999999999988743 469999998876432 3344455668899999995 334445555 5
Q ss_pred EEEEeCCCcceeeecCCccCEEEEeccccCCceEEEEEe-cCCe--EEEEEcCCCCceeeecCCCCcEEEEEEccCCCeE
Q 001790 477 IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDGK--IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1012)
Q Consensus 477 v~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 553 (1012)
|++||..+..+..+..+.......+|++ ||+.++.++ .+|. |.++++.++... .+.........++|+|||+++
T Consensus 274 Iy~~d~~~g~~~~lt~~~~~~~~~~~sp--DG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~I 350 (433)
T PRK04922 274 IYVMDLGSRQLTRLTNHFGIDTEPTWAP--DGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKI 350 (433)
T ss_pred EEEEECCCCCeEECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEE
Confidence 9999944444556666655556677866 566666655 4455 555565554432 222333445578999999999
Q ss_pred EEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeC---CCcEEEEeCCCCeeEEEEecCCCCC
Q 001790 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE---DSQIKFWDMDNVNILTSTDAEGGLP 630 (1012)
Q Consensus 554 ~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (1012)
+..... ++...|.+||+.+++......+. ......|+|||++++..+. .+.|+++++..+ ....+.... .
T Consensus 351 a~~~~~-~~~~~I~v~d~~~g~~~~Lt~~~---~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~-~~~~l~~~~--g 423 (433)
T PRK04922 351 AMVHGS-GGQYRIAVMDLSTGSVRTLTPGS---LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR-VRQRLVSAD--G 423 (433)
T ss_pred EEEECC-CCceeEEEEECCCCCeEECCCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEEcccCC--C
Confidence 887531 23447999999888765332221 2345789999999888764 346888888544 444444322 2
Q ss_pred CcceeEeec
Q 001790 631 NLPRLRFSK 639 (1012)
Q Consensus 631 ~v~~v~~s~ 639 (1012)
.+...+|+|
T Consensus 424 ~~~~p~wsp 432 (433)
T PRK04922 424 EVREPAWSP 432 (433)
T ss_pred CCCCCccCC
Confidence 567777876
No 235
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=2.3e-12 Score=143.67 Aligned_cols=224 Identities=13% Similarity=0.107 Sum_probs=144.4
Q ss_pred EeecCCCceEEEEEecCCCcEEEEe--cCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc
Q 001790 339 VSLHQGSTVISMDFHPSHQTLLLVG--SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1012)
Q Consensus 339 ~~~~h~~~V~~~~~spdg~~llasg--~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 416 (1012)
....+...+.+.+|||||+.++.+. +.+..|.+|++.+|+... +....+.+..++|||
T Consensus 193 ~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l~~~~~~~~~~~~SP 252 (429)
T PRK03629 193 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFPRHNGAPAFSP 252 (429)
T ss_pred EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ccCCCCCcCCeEECC
Confidence 3345777899999999999644443 234579999998875432 111223345689999
Q ss_pred CCCEEEEE-ECCC--eEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcC-CCcEEEE--eCCCcceeee
Q 001790 417 DGNYVGVA-FTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-DKLIKVW--ELSGRKLFNF 490 (1012)
Q Consensus 417 dg~~las~-~~d~--~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~-d~~v~vw--d~~~~~~~~~ 490 (1012)
||+.|+.. +.+| .|.+||+++++..+ +..+...+....|+|||+ .|+..+. ++...+| |..+.....+
T Consensus 253 DG~~La~~~~~~g~~~I~~~d~~tg~~~~----lt~~~~~~~~~~wSPDG~--~I~f~s~~~g~~~Iy~~d~~~g~~~~l 326 (429)
T PRK03629 253 DGSKLAFALSKTGSLNLYVMDLASGQIRQ----VTDGRSNNTEPTWFPDSQ--NLAYTSDQAGRPQVYKVNINGGAPQRI 326 (429)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCEEE----ccCCCCCcCceEECCCCC--EEEEEeCCCCCceEEEEECCCCCeEEe
Confidence 99998865 3344 58899998876433 444555678899999999 4554443 4444555 5444444455
Q ss_pred cCCccCEEEEeccccCCceEEEEEecC---CeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEE
Q 001790 491 EGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1012)
Q Consensus 491 ~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 567 (1012)
..+........|+| ||+.++..+.+ ..|.+||++++.... +.. ........|+|||+.|+..+.++ ....+.
T Consensus 327 t~~~~~~~~~~~Sp--DG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~i~~~s~~~-~~~~l~ 401 (429)
T PRK03629 327 TWEGSQNQDADVSS--DGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTMVIYSSSQG-MGSVLN 401 (429)
T ss_pred ecCCCCccCEEECC--CCCEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCEEEEEEcCC-CceEEE
Confidence 44444455667765 66677665543 358888988765433 222 12234678999999999888532 234577
Q ss_pred EEeCCCCeeeeeecCCCCCcceEEEEec
Q 001790 568 EWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1012)
Q Consensus 568 lwd~~~~~~~~~~~~~~~~~v~~~~~s~ 595 (1012)
++++ +|...+.+.++.. .+...+|+|
T Consensus 402 ~~~~-~G~~~~~l~~~~~-~~~~p~Wsp 427 (429)
T PRK03629 402 LVST-DGRFKARLPATDG-QVKFPAWSP 427 (429)
T ss_pred EEEC-CCCCeEECccCCC-CcCCcccCC
Confidence 8887 4555566666544 566777776
No 236
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.50 E-value=1.7e-10 Score=129.36 Aligned_cols=194 Identities=15% Similarity=0.180 Sum_probs=149.2
Q ss_pred ceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCc-----ceEEEEEccCCCE
Q 001790 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI-----SVSRVAWSPDGNY 420 (1012)
Q Consensus 346 ~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~v~~spdg~~ 420 (1012)
.|....+.-..+ .++.++.++.+.|||...+...... .+.. ...-+.++++.-+
T Consensus 89 wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i--------------------~~~er~~l~~~~~~g~s~~~~~ 147 (967)
T KOG0974|consen 89 WIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKI--------------------QSDERCTLYSSLIIGDSAEELY 147 (967)
T ss_pred cccccchhhhcc-eEEEEEcCceEEEEecccCceehhc--------------------CCCceEEEEeEEEEeccCcEEE
Confidence 344455555666 5788888999999999876554310 0111 2223456788889
Q ss_pred EEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCccee-eecCCccCEE
Q 001790 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF-NFEGHEAPVY 498 (1012)
Q Consensus 421 las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~-~~~~h~~~v~ 498 (1012)
+++|+.-+.|.+|+....+... .+.+|.+.|.++.|+.||+ ++++.|+|.++++|+ .+++... +.-+|+.+|+
T Consensus 148 i~~gsv~~~iivW~~~~dn~p~---~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw 222 (967)
T KOG0974|consen 148 IASGSVFGEIIVWKPHEDNKPI---RLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVW 222 (967)
T ss_pred EEeccccccEEEEeccccCCcc---eecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeE
Confidence 9999999999999998332222 4789999999999999999 899999999999999 6666655 6778999999
Q ss_pred EEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCC-CcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCC
Q 001790 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1012)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~ 574 (1012)
.++|++. .+++++.|-+.++|+.+..... .+..|. ..+..++..++...+++++ .|+.+++||....
T Consensus 223 ~~~~~~n----~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g----~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 223 ACCFLPN----RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGG----NDSTLKLWDLNGR 290 (967)
T ss_pred EEEeccc----eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeec----cCcchhhhhhhcc
Confidence 9999763 7999999999999976543333 555554 4789999998888888888 5999999997643
No 237
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.48 E-value=4.2e-10 Score=122.02 Aligned_cols=175 Identities=14% Similarity=0.237 Sum_probs=112.9
Q ss_pred CCCEeEEEEeeCCCEEEEEc--CCcEEEEEcCCCe--EE--EEEc-CCCCCeeEEEEecCCCcEEEE-EeCCCeEEEEEc
Q 001790 831 EEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFK--VM--TTFM-SPPPASTFLAFHPQDNNIIAI-GTEDSTIHIYNV 902 (1012)
Q Consensus 831 ~~~v~~~~~s~dg~~la~~s--dg~i~lwd~~~~~--~~--~~~~-~~~~~i~~l~~sp~d~~~las-~~~dg~v~iwd~ 902 (1012)
.....++.++|||+++++.. .+.|.+|++.... +. ..+. ........++|+| +++++.+ .-.+++|.++++
T Consensus 143 ~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~ 221 (345)
T PF10282_consen 143 GPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDY 221 (345)
T ss_dssp STCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEE
T ss_pred cccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEee
Confidence 44567888999999888876 4679998887654 32 2222 2334578999999 7766644 456779999999
Q ss_pred c--CCe--EeEEecc----c--CCCeEEEEEcCCCCEEEEEe-CCCcEEEEeCC--CCCccccEEEecCCCCCCCCceEE
Q 001790 903 R--VDE--VKSKLKG----H--QKRITGLAFSTSLNILVSSG-ADAQLCVWSID--TWEKRKSVTIHIPAGKTPTGDTRV 969 (1012)
Q Consensus 903 ~--~~~--~~~~~~~----h--~~~V~~l~~spdg~~l~s~s-~Dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~v~~l 969 (1012)
. ++. .+..+.. . ......++++|||++|.++. .++.|.+|+++ +|+......+.. .+ .....+
T Consensus 222 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~-~G---~~Pr~~ 297 (345)
T PF10282_consen 222 DPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT-GG---KFPRHF 297 (345)
T ss_dssp ETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE-SS---SSEEEE
T ss_pred cccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC-CC---CCccEE
Confidence 8 443 2222221 1 12578899999999987665 46789999994 344332222222 22 335899
Q ss_pred EEcCCCCEEEEE--eCCeEEEEEC--CCceEEEee---cCCCeeEEEe
Q 001790 970 QFNADQVRMLVV--HETQLAIYDA--SKMERIRQV---GSPHICSIIF 1010 (1012)
Q Consensus 970 ~fs~d~~~l~~~--~d~~i~vwd~--~~~~~~~~~---~~~~i~~~~f 1010 (1012)
+|+|||++|+++ .++.|.+|++ ++|.....- ..+...+|.|
T Consensus 298 ~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 298 AFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 999999999998 4678999865 577644433 2367777776
No 238
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.48 E-value=3.3e-12 Score=131.85 Aligned_cols=251 Identities=12% Similarity=0.125 Sum_probs=165.5
Q ss_pred ceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEE-----ccCCCE
Q 001790 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW-----SPDGNY 420 (1012)
Q Consensus 346 ~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~-----spdg~~ 420 (1012)
.+....++-.|.++.+-- ...+.+|+.+.+..+. .++....+.+. ...|=+| .|++--
T Consensus 125 ~~~~~~~~~~gd~lcFnv--g~~lyv~~~~g~~~~~-------------~pi~k~~y~gt--~P~cHdfn~~~a~~~g~d 187 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNV--GRELYVYSYRGAADLS-------------KPIDKREYKGT--SPTCHDFNSFTATPKGLD 187 (636)
T ss_pred ceeeccccCCCCEEEEec--CCeEEEEEccCcchhc-------------cchhhhcccCC--CCceecccccccCCCCcc
Confidence 566777777788654433 3578899887644432 11222233332 2223333 456778
Q ss_pred EEEEECCCeEEEEeecCCCcceeeeeee--ccccCeEEEEEeCCCCceEEEEEcCCCcEEEEeCCCcceeeecCCccCEE
Q 001790 421 VGVAFTKHLIQLYSYAGSNDLRQHSQID--AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVY 498 (1012)
Q Consensus 421 las~~~d~~v~vwd~~~~~~~~~~~~l~--~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~h~~~v~ 498 (1012)
|+.|-..|.|.+.|....+ +....... -.+..|+|+.|-|.+.. .++.+-.+|.++++|.. +.....
T Consensus 188 llIGf~tGqvq~idp~~~~-~sklfne~r~i~ktsvT~ikWvpg~~~-~Fl~a~~sGnlyly~~~---------~~~~~t 256 (636)
T KOG2394|consen 188 LLIGFTTGQVQLIDPINFE-VSKLFNEERLINKSSVTCIKWVPGSDS-LFLVAHASGNLYLYDKE---------IVCGAT 256 (636)
T ss_pred eEEeeccCceEEecchhhH-HHHhhhhcccccccceEEEEEEeCCCc-eEEEEEecCceEEeecc---------ccccCC
Confidence 8889999999999876522 22111111 13468999999998877 56667779999999841 111111
Q ss_pred EEeccccCCceEEEEEecCCeEEEEEc-CCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeee
Q 001790 499 SICPHHKENIQFIFSTAIDGKIKAWLY-DTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1012)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~ 577 (1012)
.-.+..-.++..+.... |.- .+..++..+....+.|...+|+|||++|++.+ +||.++|+|..+.+++
T Consensus 257 ~p~~~~~k~~~~f~i~t-------~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VS----qDGfLRvF~fdt~eLl 325 (636)
T KOG2394|consen 257 APSYQALKDGDQFAILT-------SKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVS----QDGFLRIFDFDTQELL 325 (636)
T ss_pred CCcccccCCCCeeEEee-------eeccccCCccceeEeccccccceeEcCCCceEEEEe----cCceEEEeeccHHHHH
Confidence 11111112222332221 111 11133334444455899999999999999999 6999999999998887
Q ss_pred eeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEee
Q 001790 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1012)
Q Consensus 578 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1012)
..+...-+ ...|++|+|||++|++|++|--|.||.+...+.+..-. +|...|+.|+|.
T Consensus 326 g~mkSYFG-GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq--GHkSWVs~VaFD 383 (636)
T KOG2394|consen 326 GVMKSYFG-GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ--GHKSWVSVVAFD 383 (636)
T ss_pred HHHHhhcc-ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc--ccccceeeEeec
Confidence 77665544 68899999999999999999999999999988887655 556689999887
No 239
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.48 E-value=1.5e-11 Score=126.67 Aligned_cols=351 Identities=12% Similarity=0.088 Sum_probs=230.4
Q ss_pred CceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEE
Q 001790 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1012)
Q Consensus 345 ~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 424 (1012)
-++..++|||.|+ +|++.. -..|.+|.-..+..+.. + --..|..+.|||.++||.+=
T Consensus 33 ~p~~~~~~SP~G~-~l~~~~-~~~V~~~~g~~~~~l~~-------------------~--~~~~V~~~~fSP~~kYL~tw 89 (561)
T COG5354 33 WPVAYVSESPLGT-YLFSEH-AAGVECWGGPSKAKLVR-------------------F--RHPDVKYLDFSPNEKYLVTW 89 (561)
T ss_pred cchhheeecCcch-heehhh-ccceEEccccchhheee-------------------e--ecCCceecccCcccceeeee
Confidence 3899999999999 677755 55799998776554432 1 12468999999999999986
Q ss_pred ECCC---------------eEEEEeecCCCcceeeeeeeccccC--eE-EEEEeCCCCceEEEEEcCCCcEEEEeCCCcc
Q 001790 425 FTKH---------------LIQLYSYAGSNDLRQHSQIDAHVGA--VN-DLAFAYPNKLLCVVTCGDDKLIKVWELSGRK 486 (1012)
Q Consensus 425 ~~d~---------------~v~vwd~~~~~~~~~~~~l~~h~~~--v~-~l~~s~~~~~~~l~s~~~d~~v~vwd~~~~~ 486 (1012)
+..+ .+.+||+.+|..+. .+.+...+ .+ -+.|+.+.. ++|-- ....++|++.++..
T Consensus 90 ~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~---sf~~~~q~~~~Wp~~k~s~~D~--y~ARv-v~~sl~i~e~t~n~ 163 (561)
T COG5354 90 SREPIIEPEIEISPFTSKNNVFVWDIASGMIVF---SFNGISQPYLGWPVLKFSIDDK--YVARV-VGSSLYIHEITDNI 163 (561)
T ss_pred ccCCccChhhccCCccccCceeEEeccCceeEe---eccccCCcccccceeeeeecch--hhhhh-ccCeEEEEecCCcc
Confidence 5433 49999999987666 34444444 55 688998888 34333 24578888843322
Q ss_pred -eeeecCC-ccCEEEEeccccCCceEEEE-----EecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeec
Q 001790 487 -LFNFEGH-EAPVYSICPHHKENIQFIFS-----TAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1012)
Q Consensus 487 -~~~~~~h-~~~v~~~~~~~~~~~~~l~s-----~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 559 (1012)
...+..- ...|....|+|.+++..|+. .+.++++++|.+.....+.........-..+.|.+.|+++++-...
T Consensus 164 ~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t 243 (561)
T COG5354 164 EEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMT 243 (561)
T ss_pred ccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEE
Confidence 1111111 24567777877766666554 3567899999988655555444444444578899999987754321
Q ss_pred -------CCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEe--CCCcEEEEeCCCCeeEEEEecCCCCC
Q 001790 560 -------KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLP 630 (1012)
Q Consensus 560 -------~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (1012)
--++..++++++....+.... ... ++|...+|.|.++.+++.+ .+-.+.++|++.. +...+...
T Consensus 244 ~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~-~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~---- 316 (561)
T COG5354 244 HTKSNKSYFGESNLYLLRITERSIPVEK-DLK-DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQ---- 316 (561)
T ss_pred eeecccceeccceEEEEeecccccceec-ccc-ccceeeeecccCCceeEEecccccceeecccccc-eEEecCCc----
Confidence 113567888888744433332 223 3899999999998877754 6888999999776 44444322
Q ss_pred CcceeEeecCCCEEEEEECC---CcEEEEEccCCceeeecccCCccccccCccceeeeccccccccccCCCCCccccccC
Q 001790 631 NLPRLRFSKEGNLLAVTTAD---NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSS 707 (1012)
Q Consensus 631 ~v~~v~~s~~g~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~ 707 (1012)
.=+.+.|+|.+++++.++-| |.+-+||..+...+...+.+.. ..-+.|+|||+++.+......
T Consensus 317 ~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n-------~s~~~wspd~qF~~~~~ts~k------- 382 (561)
T COG5354 317 KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN-------TSYCDWSPDGQFYDTDTTSEK------- 382 (561)
T ss_pred ccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC-------ceEeeccCCceEEEecCCCcc-------
Confidence 23678899999999987764 7899999988765554444322 334568888888753322110
Q ss_pred CCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeecc
Q 001790 708 PVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSN 785 (1012)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 785 (1012)
-..|+.+++|++.... -...+.+.|.|.|++..+.+..
T Consensus 383 ------------------------~~~Dn~i~l~~v~g~~----------------~fel~~~~W~p~~~~~ttsSs~ 420 (561)
T COG5354 383 ------------------------LRVDNSIKLWDVYGAK----------------VFELTNITWDPSGQYVTTSSSC 420 (561)
T ss_pred ------------------------cccCcceEEEEecCch----------------hhhhhhccccCCcccceeeccC
Confidence 1235788999986311 1244566777777766655554
No 240
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.48 E-value=6e-11 Score=132.94 Aligned_cols=281 Identities=14% Similarity=0.131 Sum_probs=187.7
Q ss_pred CCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001790 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1012)
Q Consensus 343 h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 422 (1012)
|-+++++.++-. + +|.+|+ --.|.+||+..+..+.. +. +...+..|...=.-- -.+.+++
T Consensus 6 ~~~~l~~~~~~~--~-~llag~-gp~i~~yd~~s~~li~~--~~-----------~~~~~~~H~~e~~~~---l~~~~~v 65 (967)
T KOG0974|consen 6 SLGPLNLPQLVS--D-YLLAGS-GPEILVYDLSSGCLIRH--LI-----------QSKILEVHRGEGKVK---LLSGKIV 65 (967)
T ss_pred ccccccchhhcc--c-eeeecC-CCceEEeeCCchhHhhh--hh-----------hhcccccccccccce---eccceEE
Confidence 334566666655 4 455544 45799999998877642 11 112244451000000 1233455
Q ss_pred EEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCCccC-EE-E
Q 001790 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP-VY-S 499 (1012)
Q Consensus 423 s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~-v~-~ 499 (1012)
+|..-+.+..=+..-. .+..-...|....+..+.+ .++.++.++.+.+|| ..+............ .. +
T Consensus 66 ~~~~~~~v~~~~~~~~-------~~~~~s~wi~g~~l~~e~k--~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~ 136 (967)
T KOG0974|consen 66 TCAKSDEVYVKEASNQ-------IIERFSDWIFGAKLFEENK--KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSS 136 (967)
T ss_pred EEEeecceeecchhhh-------hhhhccccccccchhhhcc--eEEEEEcCceEEEEecccCceehhcCCCceEEEEeE
Confidence 5544333332222111 1112233344455666667 677777789999999 555555544432211 11 1
Q ss_pred EeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeee-
Q 001790 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR- 578 (1012)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~- 578 (1012)
+-+-...+.-++++|+.-+.|.+|+....+....+.+|.+.|.++.++.||+++++++ .|..+++|++.+++...
T Consensus 137 ~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~S----dDRsiRlW~i~s~~~~~~ 212 (967)
T KOG0974|consen 137 LIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVS----DDRSIRLWPIDSREVLGC 212 (967)
T ss_pred EEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEe----cCcceeeeecccccccCc
Confidence 2222234556899999999999999985555556889999999999999999999999 59999999999998877
Q ss_pred eecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEc
Q 001790 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1012)
Q Consensus 579 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~ 658 (1012)
+.-+|.. .+..++|.|+ .+++++.|.+.++|+.+. ..+..+..+.. ..+..++..++....++++.|+.+++|++
T Consensus 213 ~~fgHsa-Rvw~~~~~~n--~i~t~gedctcrvW~~~~-~~l~~y~~h~g-~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 213 TGFGHSA-RVWACCFLPN--RIITVGEDCTCRVWGVNG-TQLEVYDEHSG-KGIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred ccccccc-eeEEEEeccc--eeEEeccceEEEEEeccc-ceehhhhhhhh-cceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 5667766 7888999987 999999999999997654 44445554443 26899999999999999999999999998
Q ss_pred cCC
Q 001790 659 AIG 661 (1012)
Q Consensus 659 ~~~ 661 (1012)
...
T Consensus 288 ~~r 290 (967)
T KOG0974|consen 288 NGR 290 (967)
T ss_pred hcc
Confidence 654
No 241
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.47 E-value=3.6e-10 Score=122.54 Aligned_cols=300 Identities=15% Similarity=0.239 Sum_probs=182.3
Q ss_pred CeEEEEEcCCCCceeee---cCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCC--Cee--eeeecCCCCCcceE
Q 001790 518 GKIKAWLYDTMGSRVDY---DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE--GTI--KRTYAGFRKKSNGV 590 (1012)
Q Consensus 518 g~i~~wd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~--~~~--~~~~~~~~~~~v~~ 590 (1012)
+.|.+|+++.....+.. .........++++|++++|++........+.|..|.+.. +++ +..... .......
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~-~g~~p~~ 91 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS-GGSSPCH 91 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE-SSSCEEE
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc-CCCCcEE
Confidence 68888888444433321 123445677899999999999875322467888888765 333 233322 2224566
Q ss_pred EEEecCCCEEEEEe-CCCcEEEEeCCC-CeeEEE---Eec--------CCCCCCcceeEeecCCCEEEEEEC-CCcEEEE
Q 001790 591 VQFDTTQNHFLAVG-EDSQIKFWDMDN-VNILTS---TDA--------EGGLPNLPRLRFSKEGNLLAVTTA-DNGFKIL 656 (1012)
Q Consensus 591 ~~~s~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~---~~~--------~~~~~~v~~v~~s~~g~~l~~~~~-dg~i~iw 656 (1012)
++++|++++++++. .+|.|.++++.. +.+... ... ........++.++|+|+++++... ...|++|
T Consensus 92 i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~ 171 (345)
T PF10282_consen 92 IAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVY 171 (345)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred EEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEE
Confidence 99999999999987 589999999987 444332 211 011234578999999999888765 3478888
Q ss_pred EccCCceeeecccCCccccccCccceeeeccccccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccC
Q 001790 657 ANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTD 736 (1012)
Q Consensus 657 d~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 736 (1012)
++......+...
T Consensus 172 ~~~~~~~~l~~~-------------------------------------------------------------------- 183 (345)
T PF10282_consen 172 DIDDDTGKLTPV-------------------------------------------------------------------- 183 (345)
T ss_dssp EE-TTS-TEEEE--------------------------------------------------------------------
T ss_pred EEeCCCceEEEe--------------------------------------------------------------------
Confidence 876542111000
Q ss_pred CCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeec-cCeeEeeeccccccCCCCCccccccceeecc
Q 001790 737 KPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLP 815 (1012)
Q Consensus 737 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~ 815 (1012)
..+.++ .....+.++|+|+++++++..+ ++.|.++++.... |.... ...
T Consensus 184 ----------------~~~~~~----~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~----g~~~~------~~~ 233 (345)
T PF10282_consen 184 ----------------DSIKVP----PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSD----GSLTE------IQT 233 (345)
T ss_dssp ----------------EEEECS----TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT----TEEEE------EEE
T ss_pred ----------------eccccc----cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccC----CceeE------EEE
Confidence 001111 3345688999999998877765 6889988775211 11000 000
Q ss_pred CCCceeeeccc-CCCCCCCEeEEEEeeCCCEEEEEc--CCcEEEEEcC--CCe--EEEEEcCCCCCeeEEEEecCCCcEE
Q 001790 816 SSGLLMANDVA-GVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMM--TFK--VMTTFMSPPPASTFLAFHPQDNNII 888 (1012)
Q Consensus 816 ~~~~~~~~~~~-~~~~~~~v~~~~~s~dg~~la~~s--dg~i~lwd~~--~~~--~~~~~~~~~~~i~~l~~sp~d~~~l 888 (1012)
+ ..+. +.........+++||||++|.++. .++|.+|++. +++ .+..+.........++++| ++++|
T Consensus 234 -----~-~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~-~g~~l 306 (345)
T PF10282_consen 234 -----I-STLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSP-DGRYL 306 (345)
T ss_dssp -----E-ESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-T-TSSEE
T ss_pred -----e-eeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeC-CCCEE
Confidence 0 0010 101223678899999999998886 6789999993 343 3344444444589999999 88888
Q ss_pred EEEe-CCCeEEEEEcc--CCeEeEEec-ccCCCeEEEEE
Q 001790 889 AIGT-EDSTIHIYNVR--VDEVKSKLK-GHQKRITGLAF 923 (1012)
Q Consensus 889 as~~-~dg~v~iwd~~--~~~~~~~~~-~h~~~V~~l~~ 923 (1012)
+++. .++.|.+|+++ +|.+...-. ..-....||.|
T Consensus 307 ~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 307 YVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 7776 56699999874 666544321 23345566665
No 242
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=6.7e-12 Score=140.31 Aligned_cols=225 Identities=19% Similarity=0.176 Sum_probs=141.6
Q ss_pred eEeecCCCceEEEEEecCCCcEEEEecCC--CeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEc
Q 001790 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSN--GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1012)
Q Consensus 338 ~~~~~h~~~V~~~~~spdg~~llasg~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 415 (1012)
...+.+...+.+.+|||||+.++++...+ ..|.+||+.+++... +....+.+.+.+||
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~~~g~~~~~~~S 248 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VANFKGSNSAPAWS 248 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eecCCCCccceEEC
Confidence 33445788999999999999644433222 469999998876532 22233456689999
Q ss_pred cCCCEEEE-EECCCeEEEEee--cCCCcceeeeeeeccccCeEEEEEeCCCCceEEE-EEcCCCcEEEEe--CCCcceee
Q 001790 416 PDGNYVGV-AFTKHLIQLYSY--AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVV-TCGDDKLIKVWE--LSGRKLFN 489 (1012)
Q Consensus 416 pdg~~las-~~~d~~v~vwd~--~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~-s~~~d~~v~vwd--~~~~~~~~ 489 (1012)
|||+.|+. .+.++...||.+ .++. .. .+..+.+......|+|||+. ++ ++..++...+|. ..+.....
T Consensus 249 PDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~--l~f~s~~~g~~~Iy~~~~~~g~~~~ 322 (427)
T PRK02889 249 PDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS--IYFTSDRGGAPQIYRMPASGGAAQR 322 (427)
T ss_pred CCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE--EEEEecCCCCcEEEEEECCCCceEE
Confidence 99998874 567777666655 4443 22 34456666677899999994 44 344456667776 34433333
Q ss_pred ecCCccCEEEEeccccCCceEEEEEecCC---eEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcE
Q 001790 490 FEGHEAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFL 566 (1012)
Q Consensus 490 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 566 (1012)
+..+.......+|+| +|++++..+.++ .|.+||+.++....... ........|+|||+.|+..+..+ +...+
T Consensus 323 lt~~g~~~~~~~~Sp--DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~~-g~~~l 397 (427)
T PRK02889 323 VTFTGSYNTSPRISP--DGKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQG-GRSVL 397 (427)
T ss_pred EecCCCCcCceEECC--CCCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEecC-CCEEE
Confidence 322222333456755 667887766554 69999998766543322 22346789999999999887532 23456
Q ss_pred EEEeCCCCeeeeeecCCCCCcceEEEEec
Q 001790 567 VEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1012)
Q Consensus 567 ~lwd~~~~~~~~~~~~~~~~~v~~~~~s~ 595 (1012)
.+.+. ++.....+..+.+ .+...+|+|
T Consensus 398 ~~~~~-~g~~~~~l~~~~g-~~~~p~wsp 424 (427)
T PRK02889 398 AAVSS-DGRIKQRLSVQGG-DVREPSWGP 424 (427)
T ss_pred EEEEC-CCCceEEeecCCC-CCCCCccCC
Confidence 66666 4555555544333 455566665
No 243
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=3.1e-11 Score=126.04 Aligned_cols=278 Identities=13% Similarity=0.134 Sum_probs=177.4
Q ss_pred CCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEE
Q 001790 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1012)
Q Consensus 344 ~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 423 (1012)
..+++..++|++|+ ++|.+. +..|.|++..++..+.+ --...++++.|||-|.+|.+
T Consensus 34 ~~~~~v~~~S~~G~-lfA~~~-~~~v~i~~~~~~~~~lt---------------------~~~~~~~~L~fSP~g~yL~T 90 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGR-LFAYSD-NQVVKVFEIATLKVVLC---------------------VELKKTYDLLFSPKGNYLLT 90 (566)
T ss_pred CCcceeEEEcCCCc-EEEEEc-CCeEEEEEccCCcEEEE---------------------eccceeeeeeeccccccccc
Confidence 34578899999999 677654 78999999988764322 11227899999999999976
Q ss_pred E-----ECC-----CeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEeCCCcceeeecCC
Q 001790 424 A-----FTK-----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH 493 (1012)
Q Consensus 424 ~-----~~d-----~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~h 493 (1012)
= ..+ -.+.+|+++++.... .+......-++..|+.|.. ++.--..+.+.+|+..+-....-.-|
T Consensus 91 ~e~~~i~~~~~~~~pn~~v~~vet~~~~s---~~q~k~Q~~W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~~~kl~ 164 (566)
T KOG2315|consen 91 WEPWAIYGPKNASNPNVLVYNVETGVQRS---QIQKKMQNGWVPQFSIDES---LAARLVSNEVQFYDLGSFKTIQHKLS 164 (566)
T ss_pred ccccccccCCCCCCCceeeeeeccceehh---heehhhhcCcccccccchh---hhhhhhcceEEEEecCCccceeeeee
Confidence 3 122 347799999954332 2222222226889998876 23222345677777222111111112
Q ss_pred ccCEEEEeccccCCceEEEE-----EecCCe-------------------------------------------------
Q 001790 494 EAPVYSICPHHKENIQFIFS-----TAIDGK------------------------------------------------- 519 (1012)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s-----~~~dg~------------------------------------------------- 519 (1012)
...|..+.+++.+.-..+++ .|.-+.
T Consensus 165 ~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn 244 (566)
T KOG2315|consen 165 VSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTN 244 (566)
T ss_pred ccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCC
Confidence 33344444443322122221 112223
Q ss_pred --------EEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEE
Q 001790 520 --------IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVV 591 (1012)
Q Consensus 520 --------i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~ 591 (1012)
+++.+++ +.....--...++|.++.|+|+|+.++++.. ---..+.++|++ +.++..+... +-+.+
T Consensus 245 ~SYYGEq~Lyll~t~-g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyG--fMPAkvtifnlr-~~~v~df~eg---pRN~~ 317 (566)
T KOG2315|consen 245 ASYYGEQTLYLLATQ-GESVSVPLLKEGPVHDVTWSPSGREFAVVYG--FMPAKVTIFNLR-GKPVFDFPEG---PRNTA 317 (566)
T ss_pred ccccccceEEEEEec-CceEEEecCCCCCceEEEECCCCCEEEEEEe--cccceEEEEcCC-CCEeEeCCCC---Cccce
Confidence 3333333 1122222234679999999999998777652 135678899975 4555554432 55779
Q ss_pred EEecCCCEEEEEeC---CCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEEC------CCcEEEEEccCC
Q 001790 592 QFDTTQNHFLAVGE---DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA------DNGFKILANAIG 661 (1012)
Q Consensus 592 ~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~------dg~i~iwd~~~~ 661 (1012)
-|+|.|++++.+|- .|.|-+||..+.+++..+.... .+-+.|+|||+++++++. |+.++||+....
T Consensus 318 ~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~----tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 318 FFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN----TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred EECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC----ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 99999999999874 6899999999998888887654 367899999999999876 688999998654
No 244
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=6.8e-12 Score=140.84 Aligned_cols=225 Identities=14% Similarity=0.119 Sum_probs=143.3
Q ss_pred ceEeecCCCceEEEEEecCCCcEEEEecC---CCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEE
Q 001790 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSS---NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1012)
Q Consensus 337 ~~~~~~h~~~V~~~~~spdg~~llasg~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 413 (1012)
......|...+.+.+|||||+. |+..+. +..|.+||+.+++... +..+.+...+.+
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~-la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~~g~~~~~~ 254 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKK-LAYVSFERGRSAIYVQDLATGQREL--------------------VASFRGINGAPS 254 (433)
T ss_pred ceEeecCCCccccccCCCCCCE-EEEEecCCCCcEEEEEECCCCCEEE--------------------eccCCCCccCce
Confidence 3344457788999999999995 554442 3479999998776432 222344456789
Q ss_pred EccCCCEEEE-EECCC--eEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEc-CCCc--EEEEeCCCcce
Q 001790 414 WSPDGNYVGV-AFTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDKL--IKVWELSGRKL 487 (1012)
Q Consensus 414 ~spdg~~las-~~~d~--~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~-~d~~--v~vwd~~~~~~ 487 (1012)
|||||+.|+. .+.+| .|.+||+.+++.. .+..+.......+|+|||+ .++.++ .+|. |.++|..+...
T Consensus 255 ~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~--~l~f~sd~~g~~~iy~~dl~~g~~ 328 (433)
T PRK04922 255 FSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGK--SIYFTSDRGGRPQIYRVAASGGSA 328 (433)
T ss_pred ECCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCC--EEEEEECCCCCceEEEEECCCCCe
Confidence 9999998864 45555 5999999987643 2445655667889999999 455444 4554 66666333333
Q ss_pred eeecCCccCEEEEeccccCCceEEEEEecCC---eEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCC
Q 001790 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1012)
Q Consensus 488 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 564 (1012)
..+..+.......+|++ +|+.++..+.++ .|.+||+.++.... +. +........|+|||++++..+.. .+..
T Consensus 329 ~~lt~~g~~~~~~~~Sp--DG~~Ia~~~~~~~~~~I~v~d~~~g~~~~-Lt-~~~~~~~p~~spdG~~i~~~s~~-~g~~ 403 (433)
T PRK04922 329 ERLTFQGNYNARASVSP--DGKKIAMVHGSGGQYRIAVMDLSTGSVRT-LT-PGSLDESPSFAPNGSMVLYATRE-GGRG 403 (433)
T ss_pred EEeecCCCCccCEEECC--CCCEEEEEECCCCceeEEEEECCCCCeEE-CC-CCCCCCCceECCCCCEEEEEEec-CCce
Confidence 33333333344567766 566776654432 68999987765542 22 22234567899999998887643 2356
Q ss_pred cEEEEeCCCCeeeeeecCCCCCcceEEEEec
Q 001790 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1012)
Q Consensus 565 ~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~ 595 (1012)
.|.+++... .....+..+.. .+...+|+|
T Consensus 404 ~L~~~~~~g-~~~~~l~~~~g-~~~~p~wsp 432 (433)
T PRK04922 404 VLAAVSTDG-RVRQRLVSADG-EVREPAWSP 432 (433)
T ss_pred EEEEEECCC-CceEEcccCCC-CCCCCccCC
Confidence 788888854 44444443322 455566665
No 245
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.45 E-value=8.4e-09 Score=123.63 Aligned_cols=450 Identities=11% Similarity=0.111 Sum_probs=252.3
Q ss_pred cceEEEEEccCCCEEE--EEECCC--eEEEEeecCCCcceeeeeee-----ccccCeEEEEEeCCCCceEEEEEcCCCcE
Q 001790 407 ISVSRVAWSPDGNYVG--VAFTKH--LIQLYSYAGSNDLRQHSQID-----AHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1012)
Q Consensus 407 ~~V~~v~~spdg~~la--s~~~d~--~v~vwd~~~~~~~~~~~~l~-----~h~~~v~~l~~s~~~~~~~l~s~~~d~~v 477 (1012)
..+...+|.+....+. ++.... .|.+..............+. ...+.|.++.|.++.. .++.+..+|.|
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~--~l~~~~~~Gdi 99 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSE--SLCIALASGDI 99 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCC--cEEEEECCceE
Confidence 3566677777554433 332222 24444333322222222232 2356799999999998 56777778889
Q ss_pred EEE----eCCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCC-----------------------CCc
Q 001790 478 KVW----ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-----------------------MGS 530 (1012)
Q Consensus 478 ~vw----d~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~-----------------------~~~ 530 (1012)
.+. +.....+.....-...|.+++|+| |+.+|+..+.++++.+.+-+- ++.
T Consensus 100 ~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSP--D~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkK 177 (928)
T PF04762_consen 100 ILVREDPDPDEDEIEIVGSVDSGILAASWSP--DEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKK 177 (928)
T ss_pred EEEEccCCCCCceeEEEEEEcCcEEEEEECC--CcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcc
Confidence 888 534444444444567899999987 557888888888887763210 011
Q ss_pred eeeecC------------------------CCCcEEEEEEccCCCeEEEeeecCCC--CCcEEEEeCCCCeeeeeecCCC
Q 001790 531 RVDYDA------------------------PGHWCTTMLYSADGSRLFSCGTSKDG--DSFLVEWNESEGTIKRTYAGFR 584 (1012)
Q Consensus 531 ~~~~~~------------------------~~~~v~~~~~s~~~~~l~~~~~~~~~--~~~i~lwd~~~~~~~~~~~~~~ 584 (1012)
...+.+ ....-..++|-.||.++++.+.+... ...+++|+-+ |.+..+-..-
T Consensus 178 eTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v- 255 (928)
T PF04762_consen 178 ETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPV- 255 (928)
T ss_pred cCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccC-
Confidence 111100 12245678899999999988763322 4789999965 6655554422
Q ss_pred CCcceEEEEecCCCEEEEEeC---CCcEEEEeCCCCeeEEEEecC--CCCCCcceeEeecCCCEEEEEECCCcEEEEEcc
Q 001790 585 KKSNGVVQFDTTQNHFLAVGE---DSQIKFWDMDNVNILTSTDAE--GGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1012)
Q Consensus 585 ~~~v~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~ 659 (1012)
.+--..++|-|.|++|++... ...|.+|..+ |-.-..+... .....|..+.|++|+..||+...|. |.+|...
T Consensus 256 ~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~ 333 (928)
T PF04762_consen 256 DGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRS 333 (928)
T ss_pred CCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEee
Confidence 224456899999999998763 4567777754 3333334332 3344789999999999999988664 9999988
Q ss_pred CCceeeecccCCccccccCccceeeeccccccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCC
Q 001790 660 IGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPK 739 (1012)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 739 (1012)
+-...++.-..... ...+..+.|+|.... .+.....++.+.
T Consensus 334 NYHWYLKqei~~~~---~~~~~~~~Wdpe~p~------------------------------------~L~v~t~~g~~~ 374 (928)
T PF04762_consen 334 NYHWYLKQEIRFSS---SESVNFVKWDPEKPL------------------------------------RLHVLTSNGQYE 374 (928)
T ss_pred CCEEEEEEEEEccC---CCCCCceEECCCCCC------------------------------------EEEEEecCCcEE
Confidence 76433332211110 011222444443211 112222223333
Q ss_pred CcceeEEeecCceEEEecCCCCCCCCceEEEEEe----cCcceEEEeeccCeeEeeeccccccCCCCCccccccceeecc
Q 001790 740 PWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYT----NSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLP 815 (1012)
Q Consensus 740 ~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s----~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~ 815 (1012)
.+++.- .+..+ |+..-+++.-....+.+-.+...-..|
T Consensus 375 ~~~~~~-----------------------~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPP--------------- 416 (928)
T PF04762_consen 375 IYDFAW-----------------------DVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPP--------------- 416 (928)
T ss_pred EEEEEE-----------------------EEEecCCCCccCceEEEEEeCCeEEEecccccCCCc---------------
Confidence 332221 11111 111122222222234443322211000
Q ss_pred CCCceeeecccCCCCCCCEeEEEEeeCCCEEEEEc-CCcEEEEEcCCCeEE--------EEEc----------CCCCCee
Q 001790 816 SSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVM--------TTFM----------SPPPAST 876 (1012)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~lwd~~~~~~~--------~~~~----------~~~~~i~ 876 (1012)
-.....+ ....+|.+++|++++..+|+-. ||.+.+|........ ..+. .....+.
T Consensus 417 ---PMs~~~l---~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (928)
T PF04762_consen 417 ---PMSSYEL---ELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLR 490 (928)
T ss_pred ---hHhceEE---cCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEE
Confidence 0000111 2567899999999988666655 999999885433211 1111 1233578
Q ss_pred EEEEecCCCcEEEEEeCC---CeEEEEEccCCe---EeEEecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 001790 877 FLAFHPQDNNIIAIGTED---STIHIYNVRVDE---VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWE 948 (1012)
Q Consensus 877 ~l~~sp~d~~~las~~~d---g~v~iwd~~~~~---~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~ 948 (1012)
.++|.. +..+++....+ ..+.++++...+ .+.....-.+.+..+...++...++.-..||.+...+.....
T Consensus 491 ~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~ 567 (928)
T PF04762_consen 491 QLAWLN-DDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGEL 567 (928)
T ss_pred EEEEeC-CCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCc
Confidence 888887 66666666554 578888874332 233333344556666666666556667779988876665543
No 246
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=1.3e-11 Score=122.89 Aligned_cols=272 Identities=10% Similarity=0.117 Sum_probs=191.2
Q ss_pred CCceEEEEEecCCCcEEEEec-CCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001790 344 GSTVISMDFHPSHQTLLLVGS-SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1012)
Q Consensus 344 ~~~V~~~~~spdg~~llasg~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 422 (1012)
...|+.++|--|++.=+..+. .+..+..+++.......+ .|++. ......++|..++.. ...|+
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~---------~~~l~~~~I~gl~~~--dg~Li 119 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAK---------TVSLGTKSIKGLKLA--DGTLI 119 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccc----ccccc---------ccccccccccchhhc--CCEEE
Confidence 457888888877653344443 556666666655443322 12211 233456677777765 34677
Q ss_pred EEECCCeEEEEeecCCCccee-eeeeeccccCeEEEEEeCCCCceEEEEEcCC--CcEEEEe-CCCcceeeecC------
Q 001790 423 VAFTKHLIQLYSYAGSNDLRQ-HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD--KLIKVWE-LSGRKLFNFEG------ 492 (1012)
Q Consensus 423 s~~~d~~v~vwd~~~~~~~~~-~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d--~~v~vwd-~~~~~~~~~~~------ 492 (1012)
+|-.+|.+.+|..+.+..-.. ...+..+ ..+..+.-++...+ ++++||.. ..+.+|| ...+.+..-+.
T Consensus 120 tc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L 197 (412)
T KOG3881|consen 120 TCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL 197 (412)
T ss_pred EEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCccc
Confidence 888999999999985431100 0023323 45777777777665 67789988 8899999 55554433221
Q ss_pred -Ccc--CEEEEeccccCCceEEEEEecCCeEEEEEcCCCCc-eeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEE
Q 001790 493 -HEA--PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1012)
Q Consensus 493 -h~~--~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~l 568 (1012)
-.- .++++.|.+..+...|++++.-+.+++||.+.++. ...+.....+++++...|+|++++++.. .+.+..
T Consensus 198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~~ 273 (412)
T KOG3881|consen 198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLAK 273 (412)
T ss_pred cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhhe
Confidence 112 34456666554467899999999999999987554 4567778889999999999999999874 888999
Q ss_pred EeCCCCeeeee-ecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecC
Q 001790 569 WNESEGTIKRT-YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1012)
Q Consensus 569 wd~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 640 (1012)
+|.+.++.... +.+..+ .+.++..+|.+++++++|-|..++|+|+.+.+++....... .++++.+.++
T Consensus 274 FD~r~~kl~g~~~kg~tG-sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs---~lt~il~~~~ 342 (412)
T KOG3881|consen 274 FDLRGGKLLGCGLKGITG-SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS---RLTFILLRDD 342 (412)
T ss_pred ecccCceeeccccCCccC-CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc---cccEEEecCC
Confidence 99999998877 666665 89999999999999999999999999999977766554433 3566666543
No 247
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.44 E-value=1.1e-09 Score=114.80 Aligned_cols=95 Identities=7% Similarity=0.005 Sum_probs=75.5
Q ss_pred CcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeC----------CCcEEEEeCCCCeeEEEEecCCC-----
Q 001790 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE----------DSQIKFWDMDNVNILTSTDAEGG----- 628 (1012)
Q Consensus 564 ~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~----- 628 (1012)
+.|.+.|..+++.+.++..... ...+ ++||++.++++.. +..|.+||..+.+.+..+.....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~--P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFL--PNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCC--Ccee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 7899999999999988876543 2234 9999999888765 78999999999999998876432
Q ss_pred CCCcceeEeecCCCEEEEEE-C-CCcEEEEEccCC
Q 001790 629 LPNLPRLRFSKEGNLLAVTT-A-DNGFKILANAIG 661 (1012)
Q Consensus 629 ~~~v~~v~~s~~g~~l~~~~-~-dg~i~iwd~~~~ 661 (1012)
......++++|||+++++.. . +..+.+.|+.++
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~ 138 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK 138 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCC
Confidence 11234789999999998776 3 688999998776
No 248
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.44 E-value=1.9e-10 Score=118.66 Aligned_cols=372 Identities=13% Similarity=0.099 Sum_probs=226.8
Q ss_pred EEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEE
Q 001790 521 KAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHF 600 (1012)
Q Consensus 521 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 600 (1012)
.+|...+......+....-++..+++||.|.+|++.. ...|.+|+...+..+..+... .|..+.|+|.+++|
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~-----~~~V~~~~g~~~~~l~~~~~~---~V~~~~fSP~~kYL 86 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEH-----AAGVECWGGPSKAKLVRFRHP---DVKYLDFSPNEKYL 86 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhh-----ccceEEccccchhheeeeecC---CceecccCccccee
Confidence 3455444444444444566889999999999999876 556899998877765555532 68889999999999
Q ss_pred EEEeCC---------------CcEEEEeCCCCeeEEEEecCCCCCCcc-eeEeecCCCEEEEEECCCcEEEEEccCCcee
Q 001790 601 LAVGED---------------SQIKFWDMDNVNILTSTDAEGGLPNLP-RLRFSKEGNLLAVTTADNGFKILANAIGLRS 664 (1012)
Q Consensus 601 ~~~~~d---------------g~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~ 664 (1012)
.+-+.. +.+.+||..++..+..+.........+ -+.|+-+..++|-. ....+.|+++ ++...
T Consensus 87 ~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~ 164 (561)
T COG5354 87 VTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIE 164 (561)
T ss_pred eeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccc
Confidence 986543 359999999999998887655432244 78899888877755 3457889987 32111
Q ss_pred eecccCCcccccc-Cccceeeecccccccc-ccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcc
Q 001790 665 LRAVENPPFEALR-TPIESVALKVSASSAV-SSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQ 742 (1012)
Q Consensus 665 ~~~~~~~~~~~~~-~~v~~v~~s~~g~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~ 742 (1012)
.+.....+ ..+...+++|.|..-. +...+. ..+.++.+++|.
T Consensus 165 -----~~p~~~lr~~gi~dFsisP~~n~~~la~~tPE-------------------------------k~~kpa~~~i~s 208 (561)
T COG5354 165 -----EHPFKNLRPVGILDFSISPEGNHDELAYWTPE-------------------------------KLNKPAMVRILS 208 (561)
T ss_pred -----cCchhhccccceeeEEecCCCCCceEEEEccc-------------------------------cCCCCcEEEEEE
Confidence 11222222 4567777777653211 111110 122335556665
Q ss_pred eeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeeccCeeEeeeccccccCCCCCccccccceeeccCCCceee
Q 001790 743 LAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA 822 (1012)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 822 (1012)
+...........+. -.-..+.+.+.|.++++-....+ .....-.++..+.++++...-+ .
T Consensus 209 Ip~~s~l~tk~lfk--------~~~~qLkW~~~g~~ll~l~~t~~-----------ksnKsyfgesnLyl~~~~e~~i-~ 268 (561)
T COG5354 209 IPKNSVLVTKNLFK--------VSGVQLKWQVLGKYLLVLVMTHT-----------KSNKSYFGESNLYLLRITERSI-P 268 (561)
T ss_pred ccCCCeeeeeeeEe--------ecccEEEEecCCceEEEEEEEee-----------ecccceeccceEEEEeeccccc-c
Confidence 54211111111111 12245667777776654432111 0001111122333333331111 1
Q ss_pred ecccCCCCCCCEeEEEEeeCCCEEEEEc---CCcEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEEeCC---Ce
Q 001790 823 NDVAGVNLEEAVPCIALSKNDSYVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED---ST 896 (1012)
Q Consensus 823 ~~~~~~~~~~~v~~~~~s~dg~~la~~s---dg~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~~d---g~ 896 (1012)
... ...++|...+|.|+++.+++.+ +-.+.++|++.. +... .....-+.+.|+| .+++++.++-| |.
T Consensus 269 V~~---~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~--~Pe~~rNT~~fsp-~~r~il~agF~nl~gn 341 (561)
T COG5354 269 VEK---DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFY--FPEQKRNTIFFSP-HERYILFAGFDNLQGN 341 (561)
T ss_pred eec---cccccceeeeecccCCceeEEecccccceeecccccc-eEEe--cCCcccccccccC-cccEEEEecCCccccc
Confidence 111 2578999999999998887655 577999999765 4333 3445557789999 88998887655 58
Q ss_pred EEEEEccCCeEeE-EecccCCCeEEEEEcCCCCEEEEEe------CCCcEEEEeCCCCCccccEEEecCCCCCCCCceEE
Q 001790 897 IHIYNVRVDEVKS-KLKGHQKRITGLAFSTSLNILVSSG------ADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRV 969 (1012)
Q Consensus 897 v~iwd~~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s------~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l 969 (1012)
|.+||..+...+. .+.+-. .+-+.|+|||.++.+.. .|..|.|||+..... ...+.+
T Consensus 342 i~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~--------------fel~~~ 405 (561)
T COG5354 342 IEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV--------------FELTNI 405 (561)
T ss_pred eEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEecCchh--------------hhhhhc
Confidence 9999988765444 665443 34568999999987764 378899999987442 123455
Q ss_pred EEcCCCCEEEEE
Q 001790 970 QFNADQVRMLVV 981 (1012)
Q Consensus 970 ~fs~d~~~l~~~ 981 (1012)
.|.|-|++..+.
T Consensus 406 ~W~p~~~~~tts 417 (561)
T COG5354 406 TWDPSGQYVTTS 417 (561)
T ss_pred cccCCcccceee
Confidence 566666655553
No 249
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.43 E-value=1.3e-11 Score=120.39 Aligned_cols=154 Identities=14% Similarity=0.228 Sum_probs=109.8
Q ss_pred eEEEEeeCCCEEEEEcC-----------CcEEEEEcCC-CeEEEEEc-CCCCCeeEEEEecCCCcEEEEE--eCCCeEEE
Q 001790 835 PCIALSKNDSYVMSATG-----------GKISLFNMMT-FKVMTTFM-SPPPASTFLAFHPQDNNIIAIG--TEDSTIHI 899 (1012)
Q Consensus 835 ~~~~~s~dg~~la~~sd-----------g~i~lwd~~~-~~~~~~~~-~~~~~i~~l~~sp~d~~~las~--~~dg~v~i 899 (1012)
..+.|+++|++|++-.+ |...+|.+.. ......+. ...++|.+++|+| ++..+|+. ..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc-CCCEEEEEEccCCcccEE
Confidence 35788899988865421 2355555522 22233333 2345799999999 77765544 45779999
Q ss_pred EEccCCeEeEEecccCCCeEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCCccccEEEecCCCCCCCCceEEEEcCCCC
Q 001790 900 YNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGAD---AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQV 976 (1012)
Q Consensus 900 wd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~ 976 (1012)
||++ ++.+..+. ...+..+.|||+|++|++++.+ |.|.+||+++.+.+.. .. + ..++.++|||||+
T Consensus 88 yd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~-----~~-~--~~~t~~~WsPdGr 156 (194)
T PF08662_consen 88 YDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIST-----FE-H--SDATDVEWSPDGR 156 (194)
T ss_pred EcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeec-----cc-c--CcEEEEEEcCCCC
Confidence 9996 66666664 5677899999999999998754 6699999997664322 11 2 4578999999999
Q ss_pred EEEEE-------eCCeEEEEECCCceEEEeec
Q 001790 977 RMLVV-------HETQLAIYDASKMERIRQVG 1001 (1012)
Q Consensus 977 ~l~~~-------~d~~i~vwd~~~~~~~~~~~ 1001 (1012)
+++++ .|..++||+. +|+.+....
T Consensus 157 ~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~~ 187 (194)
T PF08662_consen 157 YLATATTSPRLRVDNGFKIWSF-QGRLLYKKP 187 (194)
T ss_pred EEEEEEeccceeccccEEEEEe-cCeEeEecc
Confidence 99996 2778999998 577776653
No 250
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=2.5e-11 Score=136.54 Aligned_cols=236 Identities=13% Similarity=0.060 Sum_probs=149.7
Q ss_pred cccCCCCCccceEeecCCCceEEEEEecCCCcEEEEec--CCCeEEEEEccCCceecccccccccccccCccccceeccC
Q 001790 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGS--SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1012)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~llasg~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1012)
+|-.+.--........|...+.+.+|||||+.++.+.. .+..|.+||+.+++... +..
T Consensus 184 l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~~ 243 (435)
T PRK05137 184 LAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------VGN 243 (435)
T ss_pred EEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------eec
Confidence 44433322333334458889999999999996444432 24689999998876431 334
Q ss_pred CCcceEEEEEccCCCEEE-EEECCCe--EEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEc-CCC--cEE
Q 001790 405 VPISVSRVAWSPDGNYVG-VAFTKHL--IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDK--LIK 478 (1012)
Q Consensus 405 h~~~V~~v~~spdg~~la-s~~~d~~--v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~-~d~--~v~ 478 (1012)
+.+.+.+.+|||||+.|+ +.+.++. |.+||+.+++.. .+..+........|+|||+. ++..+ .+| .|+
T Consensus 244 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy 317 (435)
T PRK05137 244 FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLY 317 (435)
T ss_pred CCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCCE--EEEEECCCCCCeEE
Confidence 566778899999999876 4455554 777788887543 35556666778999999994 44443 333 677
Q ss_pred EEeCCCcceeeecCCccCEEEEeccccCCceEEEEEecC---CeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEE
Q 001790 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1012)
Q Consensus 479 vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 555 (1012)
+||..+.....+..+...+....|+| +|+.|+..+.+ ..|.+||++..... .+. ....+..+.|+|||+.|+.
T Consensus 318 ~~d~~g~~~~~lt~~~~~~~~~~~Sp--dG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt-~~~~~~~p~~spDG~~i~~ 393 (435)
T PRK05137 318 VMNADGSNPRRISFGGGRYSTPVWSP--RGDLIAFTKQGGGQFSIGVMKPDGSGER-ILT-SGFLVEGPTWAPNGRVIMF 393 (435)
T ss_pred EEECCCCCeEEeecCCCcccCeEECC--CCCEEEEEEcCCCceEEEEEECCCCceE-ecc-CCCCCCCCeECCCCCEEEE
Confidence 88855555555554455566677766 56677665543 35778887554432 222 2234678899999999987
Q ss_pred eeecCCCC--CcEEEEeCCCCeeeeeecCCCCCcceEEEEec
Q 001790 556 CGTSKDGD--SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1012)
Q Consensus 556 ~~~~~~~~--~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~ 595 (1012)
.+...... ..++++|+..+.. ..+.. .. .+...+|+|
T Consensus 394 ~~~~~~~~~~~~L~~~dl~g~~~-~~l~~-~~-~~~~p~Wsp 432 (435)
T PRK05137 394 FRQTPGSGGAPKLYTVDLTGRNE-REVPT-PG-DASDPAWSP 432 (435)
T ss_pred EEccCCCCCcceEEEEECCCCce-EEccC-CC-CccCcccCC
Confidence 66432221 4688888866544 33332 11 344556655
No 251
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=3.1e-11 Score=120.30 Aligned_cols=136 Identities=16% Similarity=0.198 Sum_probs=115.4
Q ss_pred CCEeEEEEeeC--CCEEEEEc-CCcEEEEEcCCC-eEEEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeE
Q 001790 832 EAVPCIALSKN--DSYVMSAT-GGKISLFNMMTF-KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV 907 (1012)
Q Consensus 832 ~~v~~~~~s~d--g~~la~~s-dg~i~lwd~~~~-~~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~ 907 (1012)
-.++.+.|-+. ...+|++. -+.+++||...+ +++..+.....+++++...| +++++.+|..-|.+..+|+.+++.
T Consensus 203 vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl 281 (412)
T KOG3881|consen 203 VWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKL 281 (412)
T ss_pred eeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCcee
Confidence 34667788776 78888888 799999999866 46677777788999999999 999999999999999999999998
Q ss_pred eEE-ecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCccccEEEecCCCCCCCCceEEEEcCCC
Q 001790 908 KSK-LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQ 975 (1012)
Q Consensus 908 ~~~-~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~ 975 (1012)
+.. +.+-++.|+++..+|.+++||++|-|..|||+|+++.+.+....+. +..+.+.+.++-
T Consensus 282 ~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvK-------s~lt~il~~~~~ 343 (412)
T KOG3881|consen 282 LGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVK-------SRLTFILLRDDV 343 (412)
T ss_pred eccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhh-------ccccEEEecCCc
Confidence 877 8899999999999999999999999999999999997665444443 455777776653
No 252
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.40 E-value=3.7e-09 Score=105.63 Aligned_cols=301 Identities=9% Similarity=0.096 Sum_probs=187.7
Q ss_pred CCeEEEEEcCCCCceee---ecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCC--CCeeeeeecCC-CCCcceE
Q 001790 517 DGKIKAWLYDTMGSRVD---YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES--EGTIKRTYAGF-RKKSNGV 590 (1012)
Q Consensus 517 dg~i~~wd~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~--~~~~~~~~~~~-~~~~v~~ 590 (1012)
++-|.+|++++...... .......++-++|+|+++.|.++...+ +++.|.-|.+. +|++...-... .+.+...
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~-~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y 93 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPG-EEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY 93 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecC-CcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence 56799999986544332 334455788999999999999988643 35666665554 35543221111 1223477
Q ss_pred EEEecCCCEEEEEe-CCCcEEEEeCCC-CeeEEEEecCCCCC----------CcceeEeecCCCEEEEEEC-CCcEEEEE
Q 001790 591 VQFDTTQNHFLAVG-EDSQIKFWDMDN-VNILTSTDAEGGLP----------NLPRLRFSKEGNLLAVTTA-DNGFKILA 657 (1012)
Q Consensus 591 ~~~s~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~~~~~~~~~----------~v~~v~~s~~g~~l~~~~~-dg~i~iwd 657 (1012)
+++++++++++++. ..|.|.++.+.. |.+........+.. -+....+.|++++|++..- --.|.+|+
T Consensus 94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred EEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence 99999999999987 568999999865 44433222111111 2778899999999988765 23688888
Q ss_pred ccCCceeeecccCCccccccCccceeeeccccccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCC
Q 001790 658 NAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDK 737 (1012)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 737 (1012)
+..+.-.... .
T Consensus 174 ~~dg~L~~~~-~-------------------------------------------------------------------- 184 (346)
T COG2706 174 LDDGKLTPAD-P-------------------------------------------------------------------- 184 (346)
T ss_pred cccCcccccc-c--------------------------------------------------------------------
Confidence 8755211000 0
Q ss_pred CCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeec-cCeeEeeeccccccCCCCCccccccceeeccC
Q 001790 738 PKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPS 816 (1012)
Q Consensus 738 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~ 816 (1012)
..++ ....-+.++|+|+++......+ +++|.+|.++... |+. -.+.
T Consensus 185 -----------------~~v~----~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~----g~~--------~~lQ 231 (346)
T COG2706 185 -----------------AEVK----PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAV----GKF--------EELQ 231 (346)
T ss_pred -----------------cccC----CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCC----ceE--------EEee
Confidence 0000 2344578999999998888886 8999999876521 110 0111
Q ss_pred CCceeeecccCCCCCCCEeEEEEeeCCCEEEEEc--CCcEEEEEcCC--CeEE--EEEcCCCCCeeEEEEecCCCcEEEE
Q 001790 817 SGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMT--FKVM--TTFMSPPPASTFLAFHPQDNNIIAI 890 (1012)
Q Consensus 817 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s--dg~i~lwd~~~--~~~~--~~~~~~~~~i~~l~~sp~d~~~las 890 (1012)
+-..+...+. ......++.+++||++|.++. ...|.+|.+.. +++. .....+........|++ ++++|++
T Consensus 232 ~i~tlP~dF~---g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~-~g~~Lia 307 (346)
T COG2706 232 TIDTLPEDFT---GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINP-SGRFLIA 307 (346)
T ss_pred eeccCccccC---CCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCC-CCCEEEE
Confidence 1111111222 456678899999999999987 46788887753 3321 22223444478899999 8888888
Q ss_pred EeCCC-eEEEEEcc--CCeEeEEec-ccCCCeEEEEEc
Q 001790 891 GTEDS-TIHIYNVR--VDEVKSKLK-GHQKRITGLAFS 924 (1012)
Q Consensus 891 ~~~dg-~v~iwd~~--~~~~~~~~~-~h~~~V~~l~~s 924 (1012)
+..++ +|.+|.++ +|++-.... .......||.|.
T Consensus 308 a~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 308 ANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred EccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 77655 78888775 455433322 233445666664
No 253
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.37 E-value=3.8e-11 Score=117.29 Aligned_cols=263 Identities=11% Similarity=0.186 Sum_probs=173.5
Q ss_pred cCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccc-cccccccCccccceeccCCCcceEEEEEccCCC-
Q 001790 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFK-IWDMAACSLPFQASIFKDVPISVSRVAWSPDGN- 419 (1012)
Q Consensus 342 ~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~- 419 (1012)
...+-|.++.|..+|. +||+|..+|.|.++.-..... ....+. .+....+..-+.. -..-...|..+.|.+++.
T Consensus 23 teadiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~-~ey~~~t~fqshepEFDYLk--SleieEKinkIrw~~~~n~ 98 (433)
T KOG1354|consen 23 TEADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYK-GEYNFQTEFQSHEPEFDYLK--SLEIEEKINKIRWLDDGNL 98 (433)
T ss_pred chhcceeeEEeecccc-eEeecCCCCeEEEeecccccc-cceeeeeeeeccCcccchhh--hhhhhhhhhhceecCCCCc
Confidence 3456899999999999 799999999999997543221 011110 0000000011110 111245788999998654
Q ss_pred -EEEEEECCCeEEEEeecCCCcce--------------------------------eeee-eeccccCeEEEEEeCCCCc
Q 001790 420 -YVGVAFTKHLIQLYSYAGSNDLR--------------------------------QHSQ-IDAHVGAVNDLAFAYPNKL 465 (1012)
Q Consensus 420 -~las~~~d~~v~vwd~~~~~~~~--------------------------------~~~~-l~~h~~~v~~l~~s~~~~~ 465 (1012)
.++..+.|.+|++|.+....... .... -.+|+--|.++.++.|+.
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E- 177 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE- 177 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-
Confidence 56677899999999886422110 0001 135777899999999998
Q ss_pred eEEEEEcCCCcEEEEe--CCCcce--eeecC-----CccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCcee----
Q 001790 466 LCVVTCGDDKLIKVWE--LSGRKL--FNFEG-----HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV---- 532 (1012)
Q Consensus 466 ~~l~s~~~d~~v~vwd--~~~~~~--~~~~~-----h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~---- 532 (1012)
.++++. |=.|.+|+ ...+.. ..++. -+.-|++..|+|... ..++-.+..|+|++.|++.....-
T Consensus 178 -t~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 178 -TFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred -eEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcchhh
Confidence 667665 88999999 333332 22222 234677888988754 577777889999999998432211
Q ss_pred eec------------CCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeC-CCCeeeeeecCCCC-----------Ccc
Q 001790 533 DYD------------APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE-SEGTIKRTYAGFRK-----------KSN 588 (1012)
Q Consensus 533 ~~~------------~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~-~~~~~~~~~~~~~~-----------~~v 588 (1012)
.+. .--..|..+.|+++|+++++-. --+|.+||+ ...+++.+++.|.. ..|
T Consensus 255 lfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~I 329 (433)
T KOG1354|consen 255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAI 329 (433)
T ss_pred hhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccch
Confidence 111 1122678899999999999863 478999999 55677777765532 112
Q ss_pred ---eEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 001790 589 ---GVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (1012)
Q Consensus 589 ---~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 617 (1012)
..++|+.++.++++|+..+.+++++...|
T Consensus 330 fdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 330 FDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred hheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 34889999999999999999999996544
No 254
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.37 E-value=8.6e-09 Score=105.32 Aligned_cols=143 Identities=10% Similarity=0.144 Sum_probs=116.5
Q ss_pred CCCCEeEEEEeeCCCEEEEEc-CC-cEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeE
Q 001790 830 LEEAVPCIALSKNDSYVMSAT-GG-KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV 907 (1012)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~s-dg-~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~ 907 (1012)
+...|.-..+..+++-++.|. || .+-+||..+++.. .+...-+.|.++..++ +|++++++.....+.+.|+++|..
T Consensus 358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vididngnv 435 (668)
T COG4946 358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNV 435 (668)
T ss_pred CCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCe
Confidence 566687788888888888887 76 7999999887754 5556778899999999 999999999888999999999987
Q ss_pred eEEecccCCCeEEEEEcCCCCEEEEEeCCC----cEEEEeCCCCCccccEEEecCCCCCCCCceEEEEcCCCCEEEEE
Q 001790 908 KSKLKGHQKRITGLAFSTSLNILVSSGADA----QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV 981 (1012)
Q Consensus 908 ~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~ 981 (1012)
...=+...+-|+...|+|+++++|-+--+| .|+++|+.+++.. .+..+.++. .+-+|.|||++|..-
T Consensus 436 ~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy---~vTT~ta~D----fsPaFD~d~ryLYfL 506 (668)
T COG4946 436 RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY---DVTTPTAYD----FSPAFDPDGRYLYFL 506 (668)
T ss_pred eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEE---EecCCcccc----cCcccCCCCcEEEEE
Confidence 665566678899999999999999876665 6899999998743 344444443 678899999998774
No 255
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.36 E-value=7.2e-11 Score=115.19 Aligned_cols=111 Identities=18% Similarity=0.325 Sum_probs=91.2
Q ss_pred CCCCEeEEEEeeCCCEEEEEc---CCcEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEEeC---CCeEEEEEcc
Q 001790 830 LEEAVPCIALSKNDSYVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE---DSTIHIYNVR 903 (1012)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~s---dg~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~~---dg~v~iwd~~ 903 (1012)
..++|.+++|+|+|+.+|+.. ++.|.+||++ ++.+..+. ...++.+.|+| +|++||+++. .|.|.+||+.
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~ 133 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVR 133 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECC
Confidence 345699999999999876553 5789999996 66666664 56778999999 9999998874 4679999999
Q ss_pred CCeEeEEecccCCCeEEEEEcCCCCEEEEEeC------CCcEEEEeCCC
Q 001790 904 VDEVKSKLKGHQKRITGLAFSTSLNILVSSGA------DAQLCVWSIDT 946 (1012)
Q Consensus 904 ~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~------Dg~i~vwd~~~ 946 (1012)
+.+.+.+.. |. .++.++|||||+++++++. |+.++||++..
T Consensus 134 ~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 134 KKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred CCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 999888775 43 4789999999999999864 78899999964
No 256
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=99.35 E-value=7e-12 Score=117.99 Aligned_cols=171 Identities=18% Similarity=0.229 Sum_probs=126.5
Q ss_pred cchHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCC---------HHHHHHHhhccCHHHHHHHHcCCCCCCCcccchhHH
Q 001790 3 SLSRELVFLILQFLEEEKFKESVHKLEKESGFFFN---------MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIF 73 (1012)
Q Consensus 3 ~~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~---------~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~ 73 (1012)
...+|++|||+.||-..||.++|+.+.+|+|+... -..+|.+|..|+-++|+..+..+.+.--+... .+.
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~-~l~ 102 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR-ELF 102 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch-hHH
Confidence 35789999999999999999999999999999872 55889999999999999999999654333322 389
Q ss_pred HHHHHhHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhhhccc-CCchHHHHHHHHHHHhhcc
Q 001790 74 FEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKY-GDTKTARGIMLIELKKLIE 152 (1012)
Q Consensus 74 ~~i~~~~~~ell~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~r~~l~~~l~~~~~ 152 (1012)
|.+.+|+++||+..+..++|++|++.++.|+...+++.++.|...|..--++.....+.. -=....|.++...++..|=
T Consensus 103 F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~l~~~s~R~kvA~~vN~aiL 182 (228)
T KOG2659|consen 103 FHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAELLSQSLRQKVASEVNSAIL 182 (228)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988788888888877665433311110000 0023457777777766543
Q ss_pred CCccccccccCCCCchhHHHHHHHHHHHHH
Q 001790 153 ANPLFRDKLAFPTLKSSRLRTLINQSLNWQ 182 (1012)
Q Consensus 153 ~~~~~~~~~~~~~~p~~rL~~ll~~~~~~q 182 (1012)
...- . --..+|..|++..+..|
T Consensus 183 ~~~~---~-----~~~~~l~~llk~~~~~~ 204 (228)
T KOG2659|consen 183 ASQE---H-----ESEPKLPFLLKLISWAQ 204 (228)
T ss_pred HHhc---c-----cccchHHHHHHHHHHHH
Confidence 3111 0 01347888885554444
No 257
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.35 E-value=1.4e-10 Score=113.49 Aligned_cols=250 Identities=14% Similarity=0.226 Sum_probs=170.0
Q ss_pred CcceEEEEEccCCCEEEEEECCCeEEEEeecCCC--cceeeeeeeccc------------cCeEEEEEeCCCCceEEEEE
Q 001790 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN--DLRQHSQIDAHV------------GAVNDLAFAYPNKLLCVVTC 471 (1012)
Q Consensus 406 ~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~--~~~~~~~l~~h~------------~~v~~l~~s~~~~~~~l~s~ 471 (1012)
..-|.+|.|..+|.+||+|..+|.|.++.-.... .......++.|. ..|..+.|.+++..-.++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4578999999999999999999999998654321 112222344454 35888999998876677788
Q ss_pred cCCCcEEEEe--CCCcce----------------------------------eee-cCCccCEEEEeccccCCceEEEEE
Q 001790 472 GDDKLIKVWE--LSGRKL----------------------------------FNF-EGHEAPVYSICPHHKENIQFIFST 514 (1012)
Q Consensus 472 ~~d~~v~vwd--~~~~~~----------------------------------~~~-~~h~~~v~~~~~~~~~~~~~l~s~ 514 (1012)
+.|++|++|. ..+... +.+ .+|+-.|++++++. |+..++++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns--D~Et~lSA 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS--DKETFLSA 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC--ccceEeec
Confidence 8899999998 222111 011 35777788888754 55666665
Q ss_pred ecCCeEEEEEcCCCCceee---ecCCC-----CcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeee----eeecC
Q 001790 515 AIDGKIKAWLYDTMGSRVD---YDAPG-----HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK----RTYAG 582 (1012)
Q Consensus 515 ~~dg~i~~wd~~~~~~~~~---~~~~~-----~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~----~~~~~ 582 (1012)
.|=.|.+|+++....... ++.+. .-|++..|+|..-.+++-++ ..|+|++-|++...+. +.+..
T Consensus 183 -DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS---SKGtIrLcDmR~~aLCd~hsKlfEe 258 (433)
T KOG1354|consen 183 -DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS---SKGTIRLCDMRQSALCDAHSKLFEE 258 (433)
T ss_pred -cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec---CCCcEEEeechhhhhhcchhhhhcc
Confidence 578899999876554432 22222 15788889996554443332 4899999999843221 11111
Q ss_pred CCC-----------CcceEEEEecCCCEEEEEeCCCcEEEEeCC-CCeeEEEEecCCC----------CCCc---ceeEe
Q 001790 583 FRK-----------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMD-NVNILTSTDAEGG----------LPNL---PRLRF 637 (1012)
Q Consensus 583 ~~~-----------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~----------~~~v---~~v~~ 637 (1012)
..+ ..|..+.|+++|+++++-.. -+|++||+. ..+++..++.+.. ...| ..++|
T Consensus 259 pedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~ 337 (433)
T KOG1354|consen 259 PEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSW 337 (433)
T ss_pred ccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEE
Confidence 111 24677999999999998654 489999994 4566666655431 1112 45789
Q ss_pred ecCCCEEEEEECCCcEEEEEccCCc
Q 001790 638 SKEGNLLAVTTADNGFKILANAIGL 662 (1012)
Q Consensus 638 s~~g~~l~~~~~dg~i~iwd~~~~~ 662 (1012)
+.++..+++|+..+.++++++..+.
T Consensus 338 sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 338 SGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred cCCcceEecccccceEEEecCCCCc
Confidence 9999999999999999999977663
No 258
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.35 E-value=7.7e-09 Score=108.43 Aligned_cols=106 Identities=8% Similarity=-0.048 Sum_probs=82.3
Q ss_pred CeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeee------cCCCCCcEEEEeCCCCeeeeeecCCCC------
Q 001790 518 GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT------SKDGDSFLVEWNESEGTIKRTYAGFRK------ 585 (1012)
Q Consensus 518 g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------~~~~~~~i~lwd~~~~~~~~~~~~~~~------ 585 (1012)
++|.+.|.++.+....+.....+- .+ ++|||+.++++.. .+..+..|.+||..+.+.+..+....+
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 889999999877766665444333 34 9999999998875 122478899999999999988774322
Q ss_pred CcceEEEEecCCCEEEEEe-C-CCcEEEEeCCCCeeEEEEec
Q 001790 586 KSNGVVQFDTTQNHFLAVG-E-DSQIKFWDMDNVNILTSTDA 625 (1012)
Q Consensus 586 ~~v~~~~~s~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~ 625 (1012)
.....++++|||+++++.. . +..|.+.|+.+++.+..+..
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v 146 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV 146 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC
Confidence 1234689999999999876 3 79999999999999988875
No 259
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=2.8e-10 Score=118.83 Aligned_cols=292 Identities=15% Similarity=0.178 Sum_probs=195.5
Q ss_pred CCccCEEEEeccccCCceEE-EEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEe
Q 001790 492 GHEAPVYSICPHHKENIQFI-FSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (1012)
Q Consensus 492 ~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd 570 (1012)
.+...-+.|..++ ||+++ ++|..--.|++||+...............|.-..++-|-..++... .|.+|.+..
T Consensus 49 e~p~ast~ik~s~--DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~----~DR~IefHa 122 (703)
T KOG2321|consen 49 EMPTASTRIKVSP--DGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQ----NDRTIEFHA 122 (703)
T ss_pred CCccccceeEecC--CCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEee----cCceeeehh
Confidence 3566666777655 66665 5566678999999987666665555555666666666655555444 366665443
Q ss_pred CCCCeeee-eecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEEC
Q 001790 571 ESEGTIKR-TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (1012)
Q Consensus 571 ~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~ 649 (1012)
..|..-. .++. .-..++++.-..-|++++....|+-++++.|..+..+..... .++++..++...+|++|+.
T Consensus 123 -k~G~hy~~RIP~----~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~--~lN~v~in~~hgLla~Gt~ 195 (703)
T KOG2321|consen 123 -KYGRHYRTRIPK----FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSG--ELNVVSINEEHGLLACGTE 195 (703)
T ss_pred -hcCeeeeeecCc----CCccccccCCCccEEEeecCcceEEEEccccccccccccccc--cceeeeecCccceEEeccc
Confidence 2222111 1111 123355554444566666666899999999999988876643 7999999999999999999
Q ss_pred CCcEEEEEccCCceeeecccCCccccccCccceeeeccccccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCc
Q 001790 650 DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPR 729 (1012)
Q Consensus 650 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 729 (1012)
+|.|..||..+...+.. +... ..|.
T Consensus 196 ~g~VEfwDpR~ksrv~~-l~~~---------~~v~--------------------------------------------- 220 (703)
T KOG2321|consen 196 DGVVEFWDPRDKSRVGT-LDAA---------SSVN--------------------------------------------- 220 (703)
T ss_pred CceEEEecchhhhhhee-eecc---------cccC---------------------------------------------
Confidence 99999999876422111 0000 0000
Q ss_pred ccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeeccCeeEeeeccccccCCCCCcccccc
Q 001790 730 TVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAV 809 (1012)
Q Consensus 730 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~ 809 (1012)
..|+ ......|+++.|+.+|-.+++|.++|.+.+||+.....
T Consensus 221 --------------------------s~pg-~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p----------- 262 (703)
T KOG2321|consen 221 --------------------------SHPG-GDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP----------- 262 (703)
T ss_pred --------------------------CCcc-ccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc-----------
Confidence 0000 01334689999999999999999999999998765321
Q ss_pred ceeeccCCCceeeecccCCCCCCCEeEEEEeeC--CCEEEEEcCCcEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcE
Q 001790 810 PQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN--DSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNI 887 (1012)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--g~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~ 887 (1012)
+.. ..+...-+|..+.|-+. +..|++.....++|||-.+|+....+.. ...++.+++-| ++.+
T Consensus 263 -----------l~~--kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p-~sGm 327 (703)
T KOG2321|consen 263 -----------LLV--KDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP-TSDLNDFCFVP-GSGM 327 (703)
T ss_pred -----------eee--cccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccc-cCCcCceeeec-CCce
Confidence 111 11125567888888664 4566666678899999999999877764 44599999999 7778
Q ss_pred EEEEeCCCeEEEEEccC
Q 001790 888 IAIGTEDSTIHIYNVRV 904 (1012)
Q Consensus 888 las~~~dg~v~iwd~~~ 904 (1012)
+.++-+++.+..|=+..
T Consensus 328 ~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 328 FFTANESSKMHTYYIPS 344 (703)
T ss_pred EEEecCCCcceeEEccc
Confidence 88898888777776654
No 260
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=4.2e-10 Score=127.11 Aligned_cols=224 Identities=13% Similarity=0.112 Sum_probs=141.7
Q ss_pred ccCCCcceEEEEEccCCCEEEEEECC---CeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCC--c
Q 001790 402 FKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--L 476 (1012)
Q Consensus 402 ~~~h~~~V~~v~~spdg~~las~~~d---~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~--~ 476 (1012)
+..+...+...+|||||+.|+..+.+ ..|.+||+.+++... +....+.+...+|+|||+. ++++.+.++ .
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~ 268 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPE 268 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCce
Confidence 44467789999999999999887644 369999999876433 3333445567899999994 233555555 5
Q ss_pred EEEEeCCCcceeeecCCccCEEEEeccccCCceEEEEEe-cCC--eEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeE
Q 001790 477 IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1012)
Q Consensus 477 v~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 553 (1012)
|++||..+.....+..+........|++ ||+.++..+ .+| .|.++++.+++... +...........|+|||+.+
T Consensus 269 Iy~~d~~~~~~~~lt~~~~~~~~~~~sp--Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i 345 (430)
T PRK00178 269 IYVMDLASRQLSRVTNHPAIDTEPFWGK--DGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTL 345 (430)
T ss_pred EEEEECCCCCeEEcccCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence 8888944444555666655556667766 555555444 344 46666776655332 22222334467899999999
Q ss_pred EEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCC---CcEEEEeCCCCeeEEEEecCCCCC
Q 001790 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED---SQIKFWDMDNVNILTSTDAEGGLP 630 (1012)
Q Consensus 554 ~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~ 630 (1012)
+..... ++...|.+||+.+++........ ......|+|+|++++..+.+ ..|+++++... ....+.... .
T Consensus 346 ~~~~~~-~~~~~l~~~dl~tg~~~~lt~~~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~-~~~~l~~~~--g 418 (430)
T PRK00178 346 VMVHRQ-DGNFHVAAQDLQRGSVRILTDTS---LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR-VRLPLPTAQ--G 418 (430)
T ss_pred EEEEcc-CCceEEEEEECCCCCEEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEECcCCC--C
Confidence 887642 12346889999887654322221 22246899999999887643 35777787543 333443322 2
Q ss_pred CcceeEeecC
Q 001790 631 NLPRLRFSKE 640 (1012)
Q Consensus 631 ~v~~v~~s~~ 640 (1012)
.+...+|+|-
T Consensus 419 ~~~~p~ws~~ 428 (430)
T PRK00178 419 EVREPSWSPY 428 (430)
T ss_pred CcCCCccCCC
Confidence 4667777763
No 261
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=3.5e-10 Score=117.54 Aligned_cols=295 Identities=12% Similarity=0.200 Sum_probs=187.3
Q ss_pred ccceEeecCCCceEEEEEecCCCcEEEEecC-----------CCeEEEEEccCCceecccccccccccccCccccceecc
Q 001790 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVGSS-----------NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK 403 (1012)
Q Consensus 335 ~~~~~~~~h~~~V~~~~~spdg~~llasg~~-----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1012)
...++.+.|. .|.-+.|||+.+ ||+|-+. ...++|||+.+|....++. + +.
T Consensus 241 f~r~~RF~Hp-~Vq~idfSP~Ek-YLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~--~--------------~~ 302 (698)
T KOG2314|consen 241 FDRIQRFYHP-GVQFIDFSPNEK-YLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFP--V--------------IK 302 (698)
T ss_pred HHHHHhccCC-CceeeecCCccc-eEEEecCCccccCcccCCCceEEEEEccccchhccee--c--------------cC
Confidence 3445566676 799999999999 6777542 2589999999998875422 1 11
Q ss_pred CCCcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCC-----CcEE
Q 001790 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KLIK 478 (1012)
Q Consensus 404 ~h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d-----~~v~ 478 (1012)
+....-.-..||.|++++|--..| .|.||+..+-..+. ...+ .-..|....|+|.+. +||--... ..+.
T Consensus 303 ~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld-~Ksl--ki~gIr~FswsP~~~--llAYwtpe~~~~parvt 376 (698)
T KOG2314|consen 303 SPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLD-KKSL--KISGIRDFSWSPTSN--LLAYWTPETNNIPARVT 376 (698)
T ss_pred CCccccceEEeccCCceeEEeccc-eEEEEecCceeeec-cccc--CCccccCcccCCCcc--eEEEEcccccCCcceEE
Confidence 111122236899999999976665 48999877632221 1111 234588899999988 56543321 2455
Q ss_pred EEe-CCCcceeeecCCccCEEEEeccccCCceEEEEEe----------cCCeEEEEEcCCCCceeeecCCCCcEEEEEEc
Q 001790 479 VWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA----------IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYS 547 (1012)
Q Consensus 479 vwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~----------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s 547 (1012)
+-. .+++.+++-.-|. |..+..+...+|.+|..-- .-..+.|+.++..........-...|...+|-
T Consensus 377 L~evPs~~~iRt~nlfn--VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWE 454 (698)
T KOG2314|consen 377 LMEVPSKREIRTKNLFN--VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWE 454 (698)
T ss_pred EEecCccceeeecccee--eeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeec
Confidence 555 5555555544443 4444555566667775431 11234455555444333333344578899999
Q ss_pred cCCCeEEEeeecCCCCCcEEEEeCCC-C---eeeeeecCCCCCcceEEEEecCCCEEEEEe---CCCcEEEEeCCCCeeE
Q 001790 548 ADGSRLFSCGTSKDGDSFLVEWNESE-G---TIKRTYAGFRKKSNGVVQFDTTQNHFLAVG---EDSQIKFWDMDNVNIL 620 (1012)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~i~lwd~~~-~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~ 620 (1012)
|.|+.+++.+.. +...++.+|.+.+ . +++..+.. ...+.+.|+|.|++++.++ ..|.+.++|+......
T Consensus 455 P~gdkF~vi~g~-~~k~tvsfY~~e~~~~~~~lVk~~dk---~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k 530 (698)
T KOG2314|consen 455 PHGDKFAVISGN-TVKNTVSFYAVETNIKKPSLVKELDK---KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLK 530 (698)
T ss_pred cCCCeEEEEEcc-ccccceeEEEeecCCCchhhhhhhcc---cccceEEEcCCCcEEEEEEecccccceEEEecchhhhh
Confidence 999988876632 3466788888773 2 23333332 3567899999999998864 6889999998753332
Q ss_pred EEEecCCCCCCcceeEeecCCCEEEEEEC------CCcEEEEEccCC
Q 001790 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTA------DNGFKILANAIG 661 (1012)
Q Consensus 621 ~~~~~~~~~~~v~~v~~s~~g~~l~~~~~------dg~i~iwd~~~~ 661 (1012)
.. ....|. ..+.+.|.|.|+++++++. |...++|+....
T Consensus 531 ~~-~~~eh~-~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 531 DT-ASPEHF-AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred hc-cCcccc-ccccceECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence 22 222222 5688999999999999876 556777776653
No 262
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.34 E-value=1.2e-08 Score=102.12 Aligned_cols=228 Identities=12% Similarity=0.160 Sum_probs=144.3
Q ss_pred EEEEEecCcceEEEeec-cCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEE
Q 001790 768 VRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYV 846 (1012)
Q Consensus 768 ~~l~~s~~g~~l~~~~~-dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 846 (1012)
+.++++++|++++++.- .|.|.++.+... |....... .+.....| ...+ .....+....+.|++++|
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~d-----G~l~~~v~-~~~h~g~~-p~~r-----Q~~~h~H~a~~tP~~~~l 159 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQAD-----GSLQPVVQ-VVKHTGSG-PHER-----QESPHVHSANFTPDGRYL 159 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccC-----Ccccccee-eeecCCCC-CCcc-----ccCCccceeeeCCCCCEE
Confidence 78899999998888875 589999876542 11111000 00011111 0000 012337788999999999
Q ss_pred EEEc--CCcEEEEEcCCCeEEEEEc---CCCCCeeEEEEecCCCcEEEEEe-CCCeEEEEEccCC--e--EeEEec----
Q 001790 847 MSAT--GGKISLFNMMTFKVMTTFM---SPPPASTFLAFHPQDNNIIAIGT-EDSTIHIYNVRVD--E--VKSKLK---- 912 (1012)
Q Consensus 847 a~~s--dg~i~lwd~~~~~~~~~~~---~~~~~i~~l~~sp~d~~~las~~-~dg~v~iwd~~~~--~--~~~~~~---- 912 (1012)
++.+ -.+|.+|++..|++...-. ........|+|+| ++++....+ -+++|.+|..+.. + .++++.
T Consensus 160 ~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~ 238 (346)
T COG2706 160 VVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPE 238 (346)
T ss_pred EEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcc
Confidence 9998 4679999999886543221 2334578999999 888776655 5889999999873 2 222221
Q ss_pred --ccCCCeEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCC-ccccEEEecCCCCCCCCceEEEEcCCCCEEEEE--eCCeE
Q 001790 913 --GHQKRITGLAFSTSLNILVSSGA-DAQLCVWSIDTWE-KRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV--HETQL 986 (1012)
Q Consensus 913 --~h~~~V~~l~~spdg~~l~s~s~-Dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~--~d~~i 986 (1012)
.-.....+|..++||++|..+.. ...|.++.++... .+.........+. ......|+++|++|+++ .+..|
T Consensus 239 dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~---~PR~F~i~~~g~~Liaa~q~sd~i 315 (346)
T COG2706 239 DFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQ---FPRDFNINPSGRFLIAANQKSDNI 315 (346)
T ss_pred ccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCc---CCccceeCCCCCEEEEEccCCCcE
Confidence 12245678899999999987643 2468888886532 2222222323332 34789999999999998 24568
Q ss_pred EEEECC--CceEEEee---cCCCeeEEEec
Q 001790 987 AIYDAS--KMERIRQV---GSPHICSIIFC 1011 (1012)
Q Consensus 987 ~vwd~~--~~~~~~~~---~~~~i~~~~f~ 1011 (1012)
.||.++ +|+.-... .++...+|.|.
T Consensus 316 ~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 316 TVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred EEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 888655 56543332 23667778775
No 263
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=3.3e-10 Score=126.98 Aligned_cols=223 Identities=13% Similarity=0.087 Sum_probs=139.7
Q ss_pred ccCCCcceEEEEEccCCCEEEEEECC-C--eEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCc--
Q 001790 402 FKDVPISVSRVAWSPDGNYVGVAFTK-H--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL-- 476 (1012)
Q Consensus 402 ~~~h~~~V~~v~~spdg~~las~~~d-~--~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~-- 476 (1012)
+..+...+.+..|||||+.|+..+.+ + .|.+||+.+++... +....+.....+|+|||+. ++++.+.++.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~ 287 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE 287 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence 44467788999999999999877543 2 58899998876432 2222333457899999995 3344555665
Q ss_pred EEEEeCCCcceeeecCCccCEEEEeccccCCceEEEEEe-cCCe--EEEEEcCCCCceeeecCCCCcEEEEEEccCCCeE
Q 001790 477 IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDGK--IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1012)
Q Consensus 477 v~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 553 (1012)
|++||..+.....+..+.......+|++ ||+.++..+ .++. |.++|+++++... +..........+|+|||+++
T Consensus 288 Iy~~dl~tg~~~~lt~~~~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l 364 (448)
T PRK04792 288 IYVVDIATKALTRITRHRAIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSM 364 (448)
T ss_pred EEEEECCCCCeEECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEE
Confidence 7777844445556665655566778866 556665544 3444 5555665554332 22223334457899999999
Q ss_pred EEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeC-CC--cEEEEeCCCCeeEEEEecCCCCC
Q 001790 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE-DS--QIKFWDMDNVNILTSTDAEGGLP 630 (1012)
Q Consensus 554 ~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~ 630 (1012)
+..+.. .+...|.++|+.+++........ ......|+|+|+.|+..+. +| .+++++. ++.....+.... .
T Consensus 365 ~~~~~~-~g~~~I~~~dl~~g~~~~lt~~~---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~--g 437 (448)
T PRK04792 365 IMVNRT-NGKFNIARQDLETGAMQVLTSTR---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQ--G 437 (448)
T ss_pred EEEEec-CCceEEEEEECCCCCeEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCC--C
Confidence 887642 12346777888887654322221 1223579999999887664 33 3777787 455555554432 2
Q ss_pred CcceeEeec
Q 001790 631 NLPRLRFSK 639 (1012)
Q Consensus 631 ~v~~v~~s~ 639 (1012)
.+...+|+|
T Consensus 438 ~~~~p~Wsp 446 (448)
T PRK04792 438 EVKSPAWSP 446 (448)
T ss_pred CcCCCccCC
Confidence 567778887
No 264
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=2.8e-10 Score=126.37 Aligned_cols=216 Identities=13% Similarity=0.112 Sum_probs=134.7
Q ss_pred CceEEEEEecCcceEE---EeeccCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEee
Q 001790 765 SKVVRLLYTNSAVGLL---ALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK 841 (1012)
Q Consensus 765 ~~i~~l~~s~~g~~l~---~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 841 (1012)
..+.+-.|+|||+.++ +...+|.-.+|-. ++.+|.... +.. ........+|||
T Consensus 185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~--------------------~l~~g~~~~--lt~--~~g~~~~p~wSP 240 (428)
T PRK01029 185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLG--------------------SLENPAGKK--ILA--LQGNQLMPTFSP 240 (428)
T ss_pred CCcccceEccCCCceEEEEEEccCCCceEEEE--------------------ECCCCCceE--eec--CCCCccceEECC
Confidence 3456779999997532 4444554444422 233332111 111 233345679999
Q ss_pred CCCEEEEEc--CC--c--EEEEEcCCC---eEEEEEcCCCCCeeEEEEecCCCcEEEEEe-CCCeEEEE--EccC-CeEe
Q 001790 842 NDSYVMSAT--GG--K--ISLFNMMTF---KVMTTFMSPPPASTFLAFHPQDNNIIAIGT-EDSTIHIY--NVRV-DEVK 908 (1012)
Q Consensus 842 dg~~la~~s--dg--~--i~lwd~~~~---~~~~~~~~~~~~i~~l~~sp~d~~~las~~-~dg~v~iw--d~~~-~~~~ 908 (1012)
||+.||..+ +| . +..|++..+ +......++.......+|+| ||+.|+..+ .+|...+| ++.. +...
T Consensus 241 DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~~~~g~~~ 319 (428)
T PRK01029 241 RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQIDPEGQSP 319 (428)
T ss_pred CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECcccccce
Confidence 999998765 23 2 444777653 33333333334456789999 888777665 46655555 4432 2334
Q ss_pred EEecccCCCeEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCCccccEEEecCCCCCCCCceEEEEcCCCCEEEEE-e--
Q 001790 909 SKLKGHQKRITGLAFSTSLNILVSSGAD---AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-H-- 982 (1012)
Q Consensus 909 ~~~~~h~~~V~~l~~spdg~~l~s~s~D---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~-~-- 982 (1012)
..+..+...+....|||||++|+..+.+ ..|++||+.+++.. .+..+. ..+....|+|||+.|+.. .
T Consensus 320 ~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-----~Lt~~~--~~~~~p~wSpDG~~L~f~~~~~ 392 (428)
T PRK01029 320 RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-----QLTTSP--ENKESPSWAIDSLHLVYSAGNS 392 (428)
T ss_pred EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-----EccCCC--CCccceEECCCCCEEEEEECCC
Confidence 4455555677889999999999877653 36999999988743 112221 345779999999988864 2
Q ss_pred -CCeEEEEECCCceEEEeecC-CCeeEEEecC
Q 001790 983 -ETQLAIYDASKMERIRQVGS-PHICSIIFCN 1012 (1012)
Q Consensus 983 -d~~i~vwd~~~~~~~~~~~~-~~i~~~~f~p 1012 (1012)
...|.+||+.+++....... +.+...+|+|
T Consensus 393 g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~ 424 (428)
T PRK01029 393 NESELYLISLITKKTRKIVIGSGEKRFPSWGA 424 (428)
T ss_pred CCceEEEEECCCCCEEEeecCCCcccCceecC
Confidence 35799999988876544433 5677888887
No 265
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.33 E-value=3.1e-10 Score=128.24 Aligned_cols=210 Identities=15% Similarity=0.096 Sum_probs=137.5
Q ss_pred ccCCCcceEEEEEccCCCEEEEEECC---CeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCC--c
Q 001790 402 FKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--L 476 (1012)
Q Consensus 402 ~~~h~~~V~~v~~spdg~~las~~~d---~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~--~ 476 (1012)
+..+...+.+.+|||||++||.+..+ ..|++||+.+++... +..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----VASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 44566778999999999999987654 479999999875432 3445666778999999985 334455444 5
Q ss_pred EEEEeCCCcceeeecCCccCEEEEeccccCCceEEEEEec-CC--eEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeE
Q 001790 477 IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1012)
Q Consensus 477 v~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 553 (1012)
|++||..+.....+..+........|++ +|+.|+..+. ++ .|.++|+.++.. ..+.........+.|+|+|+++
T Consensus 260 i~~~d~~~~~~~~l~~~~~~~~~~~~s~--dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i 336 (417)
T TIGR02800 260 IYVMDLDGKQLTRLTNGPGIDTEPSWSP--DGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLI 336 (417)
T ss_pred EEEEECCCCCEEECCCCCCCCCCEEECC--CCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEE
Confidence 8888844444555555555455566765 6666665543 33 577777765443 3334445567788999999999
Q ss_pred EEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCC---cEEEEeCCCCeeEEEEe
Q 001790 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS---QIKFWDMDNVNILTSTD 624 (1012)
Q Consensus 554 ~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~ 624 (1012)
+.+..+. +...|.+||+.++..... .... ......|+|++++|+..+.++ .+++.+.. +.....+.
T Consensus 337 ~~~~~~~-~~~~i~~~d~~~~~~~~l-~~~~--~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 337 AFVHREG-GGFNIAVMDLDGGGERVL-TDTG--LDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred EEEEccC-CceEEEEEeCCCCCeEEc-cCCC--CCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECC
Confidence 9887421 234789999887654332 2221 234468999999998877543 45555543 44444444
No 266
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=1.9e-09 Score=112.29 Aligned_cols=311 Identities=13% Similarity=0.169 Sum_probs=187.8
Q ss_pred cEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeC-----------CCc
Q 001790 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE-----------DSQ 608 (1012)
Q Consensus 540 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----------dg~ 608 (1012)
.-+-+.|||.|.+|++-. ...|.+|--.+-..++.|... .+.-+.|||..++|++-+. ...
T Consensus 212 Tetyv~wSP~GTYL~t~H-----k~GI~lWGG~~f~r~~RF~Hp---~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~ 283 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFH-----KQGIALWGGESFDRIQRFYHP---GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQ 283 (698)
T ss_pred eeeeEEecCCceEEEEEe-----ccceeeecCccHHHHHhccCC---CceeeecCCccceEEEecCCccccCcccCCCce
Confidence 346789999999999986 566899987776666666532 5788999999999999652 257
Q ss_pred EEEEeCCCCeeEEEEecCCCCCCc-ceeEeecCCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeecc
Q 001790 609 IKFWDMDNVNILTSTDAEGGLPNL-PRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKV 687 (1012)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~~~v-~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~ 687 (1012)
++|||+.+|.....+........+ .-..||.|++++|--.. ..|.||+...- ..+..... .-.+|....|+|
T Consensus 284 l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf----~lld~Ksl--ki~gIr~FswsP 356 (698)
T KOG2314|consen 284 LIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSF----MLLDKKSL--KISGIRDFSWSP 356 (698)
T ss_pred EEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCce----eeeccccc--CCccccCcccCC
Confidence 999999999998888763332233 45689999999987776 48889987542 22222222 223466777777
Q ss_pred ccccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCce
Q 001790 688 SASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKV 767 (1012)
Q Consensus 688 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i 767 (1012)
.+..|++-.. .....+.....+.+|
T Consensus 357 ~~~llAYwtp----------------------------------------------e~~~~parvtL~evP--------- 381 (698)
T KOG2314|consen 357 TSNLLAYWTP----------------------------------------------ETNNIPARVTLMEVP--------- 381 (698)
T ss_pred CcceEEEEcc----------------------------------------------cccCCcceEEEEecC---------
Confidence 7666642111 000001111111111
Q ss_pred EEEEEecCcceEEEeeccCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEEE
Q 001790 768 VRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVM 847 (1012)
Q Consensus 768 ~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 847 (1012)
.++.|=+ ..++ ++.+ ..+-|-.+|.+|+
T Consensus 382 -------s~~~iRt------~nlf----------------------nVsD-----------------ckLhWQk~gdyLc 409 (698)
T KOG2314|consen 382 -------SKREIRT------KNLF----------------------NVSD-----------------CKLHWQKSGDYLC 409 (698)
T ss_pred -------ccceeee------ccce----------------------eeec-----------------cEEEeccCCcEEE
Confidence 1111100 0000 0000 0122223444443
Q ss_pred EEc-----------CCcEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEEeCC---CeEEEEEccCC----eEeE
Q 001790 848 SAT-----------GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED---STIHIYNVRVD----EVKS 909 (1012)
Q Consensus 848 ~~s-----------dg~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~~d---g~v~iwd~~~~----~~~~ 909 (1012)
.-- -..+.|+.+...........-...|...+|-| .|..+++-+.+ .++.+|.+++. +++.
T Consensus 410 vkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP-~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk 488 (698)
T KOG2314|consen 410 VKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEP-HGDKFAVISGNTVKNTVSFYAVETNIKKPSLVK 488 (698)
T ss_pred EEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeecc-CCCeEEEEEccccccceeEEEeecCCCchhhhh
Confidence 321 12356666655443333233456788999999 66555554432 38999988732 3444
Q ss_pred EecccCCCeEEEEEcCCCCEEEEE---eCCCcEEEEeCCCCCccccEEEecCCCCCCCCceEEEEcCCCCEEEEE
Q 001790 910 KLKGHQKRITGLAFSTSLNILVSS---GADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV 981 (1012)
Q Consensus 910 ~~~~h~~~V~~l~~spdg~~l~s~---s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~ 981 (1012)
.+.. ...+.+.|+|.|++++.+ |..|.+.++|++-.....+ . ...| ...+.+.|.|.|+|++++
T Consensus 489 ~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~---~-~~eh--~~at~veWDPtGRYvvT~ 555 (698)
T KOG2314|consen 489 ELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDT---A-SPEH--FAATEVEWDPTGRYVVTS 555 (698)
T ss_pred hhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhc---c-Cccc--cccccceECCCCCEEEEe
Confidence 4442 446789999999998875 4578899999985332211 1 1122 456789999999999997
No 267
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.32 E-value=8.2e-11 Score=115.18 Aligned_cols=204 Identities=16% Similarity=0.181 Sum_probs=137.5
Q ss_pred eeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe--CCCcceeeec-CCccCEEEEeccccCCceEEEEEecCCeEEE
Q 001790 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKA 522 (1012)
Q Consensus 446 ~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd--~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~ 522 (1012)
.++||.+.|++...-|... -+++.+.|.+++||- ..|+.-..+. ....++.++.+.. +...|+.|-..|++.-
T Consensus 19 ~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~--e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS--ESRRLYVGQDNGTVTE 94 (404)
T ss_pred hhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec--cceEEEEEEecceEEE
Confidence 5779999999988888777 689999999999998 4454433332 2345677777654 5578999999999988
Q ss_pred EEcC----CCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCC
Q 001790 523 WLYD----TMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598 (1012)
Q Consensus 523 wd~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 598 (1012)
+.+. .......+..|...+..+.|+-...++++++. |..+.---.+.+..+..+.-... .....+.- .
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~----dk~~~~hc~e~~~~lg~Y~~~~~--~t~~~~d~--~ 166 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGK----DKQFAWHCTESGNRLGGYNFETP--ASALQFDA--L 166 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEecc----ccceEEEeeccCCcccceEeecc--CCCCceee--E
Confidence 8553 33344456678889999999999999999883 44443222333333322221110 11111111 1
Q ss_pred EEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCC
Q 001790 599 HFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1012)
Q Consensus 599 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~ 661 (1012)
+.+.|...|.|..-.+....+-......++...+.+++|.+....+.+|..|..+.+||+...
T Consensus 167 ~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~ 229 (404)
T KOG1409|consen 167 YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR 229 (404)
T ss_pred EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCC
Confidence 455566677777666554444333444466679999999999999999999999999998654
No 268
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=6.3e-10 Score=123.55 Aligned_cols=224 Identities=12% Similarity=0.040 Sum_probs=138.6
Q ss_pred CCCceEEEEEecCCCcE--EEEecCCC--eEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCC
Q 001790 343 QGSTVISMDFHPSHQTL--LLVGSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1012)
Q Consensus 343 h~~~V~~~~~spdg~~l--lasg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 418 (1012)
....+..-+|||||+.+ +++...+| .|.+.++.+|+... +....+.....+|||||
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------ILALQGNQLMPTFSPRK 242 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------eecCCCCccceEECCCC
Confidence 55567888999999853 33444444 57777887765432 22234455678999999
Q ss_pred CEEEEEEC-CC----eEEEEeecCCC--cceeeeeeeccccCeEEEEEeCCCCceEEEE-EcCCCcEEEEe--C--CCcc
Q 001790 419 NYVGVAFT-KH----LIQLYSYAGSN--DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVT-CGDDKLIKVWE--L--SGRK 486 (1012)
Q Consensus 419 ~~las~~~-d~----~v~vwd~~~~~--~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s-~~~d~~v~vwd--~--~~~~ 486 (1012)
+.||..+. +| .+.+|++.++. ..+. ...++.+.....+|+|||+. |+. ...+|...+|. . .+..
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~--lt~~~~~~~~~p~wSPDG~~--Laf~s~~~g~~~ly~~~~~~~g~~ 318 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRR--LLNEAFGTQGNPSFSPDGTR--LVFVSNKDGRPRIYIMQIDPEGQS 318 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceE--eecCCCCCcCCeEECCCCCE--EEEEECCCCCceEEEEECcccccc
Confidence 99987653 22 34457776532 1221 12223344567899999994 443 34566555554 3 2334
Q ss_pred eeeecCCccCEEEEeccccCCceEEEEEecC---CeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCC
Q 001790 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1012)
Q Consensus 487 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 563 (1012)
...+..+...+....|+| ||+.|+..+.+ ..|.+||+.+++..... .....+....|+|||+.|+..... .+.
T Consensus 319 ~~~lt~~~~~~~~p~wSP--DG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~wSpDG~~L~f~~~~-~g~ 394 (428)
T PRK01029 319 PRLLTKKYRNSSCPAWSP--DGKKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKESPSWAIDSLHLVYSAGN-SNE 394 (428)
T ss_pred eEEeccCCCCccceeECC--CCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCccceEECCCCCEEEEEECC-CCC
Confidence 455555555666778866 56677665443 46899999877654433 223456789999999998876532 245
Q ss_pred CcEEEEeCCCCeeeeeecCCCCCcceEEEEecC
Q 001790 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT 596 (1012)
Q Consensus 564 ~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~ 596 (1012)
..|+++|+.+++........ ..+...+|+|.
T Consensus 395 ~~L~~vdl~~g~~~~Lt~~~--g~~~~p~Ws~~ 425 (428)
T PRK01029 395 SELYLISLITKKTRKIVIGS--GEKRFPSWGAF 425 (428)
T ss_pred ceEEEEECCCCCEEEeecCC--CcccCceecCC
Confidence 77999999887765544322 13455677764
No 269
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=6.5e-10 Score=125.57 Aligned_cols=226 Identities=13% Similarity=0.085 Sum_probs=137.0
Q ss_pred ceEeecCCCceEEEEEecCCCcEEEEecCC--CeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEE
Q 001790 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSN--GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1012)
Q Consensus 337 ~~~~~~h~~~V~~~~~spdg~~llasg~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 414 (1012)
....+.+...+...+|||||++++++...+ ..|.+||+.+++... +....+.+...+|
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~~~g~~~~~~~ 250 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITNFEGLNGAPAW 250 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccCCCCCcCCeEE
Confidence 344456788899999999999655554333 368899998876432 2222334557899
Q ss_pred ccCCCEEEE-EECCC--eEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCC--cEEEEe-CCCccee
Q 001790 415 SPDGNYVGV-AFTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKVWE-LSGRKLF 488 (1012)
Q Consensus 415 spdg~~las-~~~d~--~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~--~v~vwd-~~~~~~~ 488 (1012)
||||+.|+. .+.+| .|.+||+.+++... +..+........|+|||+. ++++...++ .|+++| .+++. .
T Consensus 251 SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~----lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~~d~~~g~~-~ 324 (430)
T PRK00178 251 SPDGSKLAFVLSKDGNPEIYVMDLASRQLSR----VTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYKVNVNGGRA-E 324 (430)
T ss_pred CCCCCEEEEEEccCCCceEEEEECCCCCeEE----cccCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECCCCCE-E
Confidence 999998874 44444 58888998875432 4455566777899999995 233333344 577777 45543 3
Q ss_pred eecCCccCEEEEeccccCCceEEEEEec-CC--eEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCc
Q 001790 489 NFEGHEAPVYSICPHHKENIQFIFSTAI-DG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1012)
Q Consensus 489 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 565 (1012)
.+...........|++ +|+.++..+. ++ .|.+||+.++........ .......|+|||+.++...... +...
T Consensus 325 ~lt~~~~~~~~~~~Sp--dg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~~-g~~~ 399 (430)
T PRK00178 325 RVTFVGNYNARPRLSA--DGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQQ-GRGV 399 (430)
T ss_pred EeecCCCCccceEECC--CCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEecC-CceE
Confidence 3322222223445655 5566666554 33 577888887654332222 2223568999999998876422 3456
Q ss_pred EEEEeCCCCeeeeeecCCCCCcceEEEEec
Q 001790 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1012)
Q Consensus 566 i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~ 595 (1012)
+.+++... ...+.+..... .+...+|+|
T Consensus 400 l~~~~~~g-~~~~~l~~~~g-~~~~p~ws~ 427 (430)
T PRK00178 400 LMLVSING-RVRLPLPTAQG-EVREPSWSP 427 (430)
T ss_pred EEEEECCC-CceEECcCCCC-CcCCCccCC
Confidence 77777743 33334433222 445556665
No 270
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.28 E-value=3.7e-10 Score=110.69 Aligned_cols=251 Identities=16% Similarity=0.317 Sum_probs=173.3
Q ss_pred eeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEe-CCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEE
Q 001790 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD-MDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (1012)
Q Consensus 576 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~ 654 (1012)
....++|+.+ .++....-|..+-+++.+.|.++++|- .+.++....+... ...+++++.+.++...|++|-..|++.
T Consensus 16 ll~~~eG~~d-~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~-mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 16 LLSKIEGSQD-DVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHY-MPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhcCchh-hhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhh-CCCCceEeeeeccceEEEEEEecceEE
Confidence 4456667766 677777778888999999999999995 4455555544432 234789999999999999999999988
Q ss_pred EEEccCCceeeecccCCccccccCccceeeeccccccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccc
Q 001790 655 ILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDV 734 (1012)
Q Consensus 655 iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 734 (1012)
-+.+........
T Consensus 94 efs~sedfnkm~-------------------------------------------------------------------- 105 (404)
T KOG1409|consen 94 EFALSEDFNKMT-------------------------------------------------------------------- 105 (404)
T ss_pred EEEhhhhhhhcc--------------------------------------------------------------------
Confidence 776644311110
Q ss_pred cCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeeccCeeEeeeccccccCCCCCccccccceeec
Q 001790 735 TDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWL 814 (1012)
Q Consensus 735 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~ 814 (1012)
.+|.| ..|...+..+.|+-.-.++++.+.|..+. |-...
T Consensus 106 --~~r~~-------------------~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e------------------- 144 (404)
T KOG1409|consen 106 --FLKDY-------------------LAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTE------------------- 144 (404)
T ss_pred --hhhhh-------------------hhhhcceeeEEecCCceeEEEeccccceE-EEeec-------------------
Confidence 01111 12778888888888888888888886554 32111
Q ss_pred cCCCceeeecccCCCCCCCEeEEEEeeCCCEEEEEc-CCcEEEE--EcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEE
Q 001790 815 PSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLF--NMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG 891 (1012)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~lw--d~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~ 891 (1012)
.|..+.... ....-+++.+.-. +...|. .|.|.+- ......++.++.+|.+.+++++|.| ..++|.+|
T Consensus 145 --~~~~lg~Y~----~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg 215 (404)
T KOG1409|consen 145 --SGNRLGGYN----FETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSG 215 (404)
T ss_pred --cCCcccceE----eeccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEec
Confidence 111000000 0001111111111 344444 4554443 3345677889999999999999999 88999999
Q ss_pred eCCCeEEEEEccCCe-EeEEecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001790 892 TEDSTIHIYNVRVDE-VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT 946 (1012)
Q Consensus 892 ~~dg~v~iwd~~~~~-~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~ 946 (1012)
..|..|.+||+-..+ ....+.+|.+.|..+...+--+.|++++.||.|.+|+.+.
T Consensus 216 ~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 216 ASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred cccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 999999999997654 3457789999999999888889999999999999999865
No 271
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=4.2e-10 Score=126.09 Aligned_cols=224 Identities=15% Similarity=0.120 Sum_probs=133.6
Q ss_pred EeecCCCceEEEEEecCCCcEEEEecCCC--eEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc
Q 001790 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1012)
Q Consensus 339 ~~~~h~~~V~~~~~spdg~~llasg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 416 (1012)
..+.+...+.+..|||||++++.+...++ .|.+||+.+++... +....+.....+|||
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--------------------lt~~~g~~~~~~wSP 271 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--------------------VTSFPGINGAPRFSP 271 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ecCCCCCcCCeeECC
Confidence 34457778999999999996555443333 58888988776422 111122334689999
Q ss_pred CCCEEEE-EECCCe--EEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCC--cEEEEe-CCCcceeee
Q 001790 417 DGNYVGV-AFTKHL--IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKVWE-LSGRKLFNF 490 (1012)
Q Consensus 417 dg~~las-~~~d~~--v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~--~v~vwd-~~~~~~~~~ 490 (1012)
||+.|+. .+.++. |.+||+.+++.. .+..+.......+|+|||+. ++++...++ .|.++| .+++ ...+
T Consensus 272 DG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~-~~~L 345 (448)
T PRK04792 272 DGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGK-VSRL 345 (448)
T ss_pred CCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCC-EEEE
Confidence 9998875 455664 777888876533 24445566778899999995 233444444 455666 4444 3333
Q ss_pred cCCccCEEEEeccccCCceEEEEEec-CCe--EEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEE
Q 001790 491 EGHEAPVYSICPHHKENIQFIFSTAI-DGK--IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1012)
Q Consensus 491 ~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 567 (1012)
..........+|++ ||+.++..+. ++. |.++|++++.... +... .......|+|||+.++..... ++...++
T Consensus 346 t~~g~~~~~~~~Sp--DG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~-~g~~~l~ 420 (448)
T PRK04792 346 TFEGEQNLGGSITP--DGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTY-QGKQVLA 420 (448)
T ss_pred ecCCCCCcCeeECC--CCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEec-CCceEEE
Confidence 22222233456655 5566655544 443 4456766654432 2211 122345799999999877642 2344577
Q ss_pred EEeCCCCeeeeeecCCCCCcceEEEEec
Q 001790 568 EWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1012)
Q Consensus 568 lwd~~~~~~~~~~~~~~~~~v~~~~~s~ 595 (1012)
+++. +|.....+..... .+...+|+|
T Consensus 421 ~~~~-~G~~~~~l~~~~g-~~~~p~Wsp 446 (448)
T PRK04792 421 AVSI-DGRFKARLPAGQG-EVKSPAWSP 446 (448)
T ss_pred EEEC-CCCceEECcCCCC-CcCCCccCC
Confidence 8886 5555555554433 455667766
No 272
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.26 E-value=5.3e-10 Score=126.37 Aligned_cols=212 Identities=17% Similarity=0.158 Sum_probs=135.2
Q ss_pred ceEeecCCCceEEEEEecCCCcEEEEecCC---CeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEE
Q 001790 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSN---GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1012)
Q Consensus 337 ~~~~~~h~~~V~~~~~spdg~~llasg~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 413 (1012)
....+.+...+.+.+|||||++ |+.++.+ ..|.+||+.+++... +..+.+.+.+++
T Consensus 182 ~~~l~~~~~~~~~p~~Spdg~~-la~~~~~~~~~~i~v~d~~~g~~~~--------------------~~~~~~~~~~~~ 240 (417)
T TIGR02800 182 PQTITRSREPILSPAWSPDGQK-LAYVSFESGKPEIYVQDLATGQREK--------------------VASFPGMNGAPA 240 (417)
T ss_pred CEEeecCCCceecccCCCCCCE-EEEEEcCCCCcEEEEEECCCCCEEE--------------------eecCCCCccceE
Confidence 3344457778999999999996 5544332 479999998875432 223455677799
Q ss_pred EccCCCEEEEE-ECCC--eEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEc-CCC--cEEEEeCCCcce
Q 001790 414 WSPDGNYVGVA-FTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDK--LIKVWELSGRKL 487 (1012)
Q Consensus 414 ~spdg~~las~-~~d~--~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~-~d~--~v~vwd~~~~~~ 487 (1012)
|+|||+.|+.. +.++ .|.+||+.+++... +..+........|+|||+ .++..+ .++ .|.++|..+...
T Consensus 241 ~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~----l~~~~~~~~~~~~s~dg~--~l~~~s~~~g~~~iy~~d~~~~~~ 314 (417)
T TIGR02800 241 FSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR----LTNGPGIDTEPSWSPDGK--SIAFTSDRGGSPQIYMMDADGGEV 314 (417)
T ss_pred ECCCCCEEEEEECCCCCccEEEEECCCCCEEE----CCCCCCCCCCEEECCCCC--EEEEEECCCCCceEEEEECCCCCE
Confidence 99999988754 4444 58888988765332 444555556789999999 444433 333 577778444444
Q ss_pred eeecCCccCEEEEeccccCCceEEEEEecCC---eEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCC
Q 001790 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1012)
Q Consensus 488 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 564 (1012)
..+..+...+....|++ +|++++.++.++ .|.+||+.++.... +... .......|+|||+.|+...... +..
T Consensus 315 ~~l~~~~~~~~~~~~sp--dg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~-~~~~~p~~spdg~~l~~~~~~~-~~~ 389 (417)
T TIGR02800 315 RRLTFRGGYNASPSWSP--DGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDT-GLDESPSFAPNGRMILYATTRG-GRG 389 (417)
T ss_pred EEeecCCCCccCeEECC--CCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEeCC-CcE
Confidence 45554555566677766 567787777665 78888887744332 2222 2234568999999998877532 234
Q ss_pred cEEEEeCCCCeeeeeec
Q 001790 565 FLVEWNESEGTIKRTYA 581 (1012)
Q Consensus 565 ~i~lwd~~~~~~~~~~~ 581 (1012)
.+++.+.. +.....+.
T Consensus 390 ~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 390 VLGLVSTD-GRFRARLP 405 (417)
T ss_pred EEEEEECC-CceeeECC
Confidence 56666543 44344443
No 273
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.23 E-value=8.4e-09 Score=114.44 Aligned_cols=305 Identities=10% Similarity=0.034 Sum_probs=183.4
Q ss_pred eEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcc
Q 001790 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSN 588 (1012)
Q Consensus 509 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v 588 (1012)
..++.++.+|.+..+|..+++..+...........+.. ++..+++++ .++.++.+|..+|+.+........ ..
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~----~~g~l~ald~~tG~~~W~~~~~~~-~~ 138 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGT----EKGEVIALDAEDGKELWRAKLSSE-VL 138 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEc----CCCEEEEEECCCCcEeeeeccCce-ee
Confidence 47888888999999999998888776655432223322 456677665 488999999999998876553321 11
Q ss_pred eEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCC---cceeEeecCCCEEEEEECCCcEEEEEccCCceee
Q 001790 589 GVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN---LPRLRFSKEGNLLAVTTADNGFKILANAIGLRSL 665 (1012)
Q Consensus 589 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~ 665 (1012)
....+ .+..++.++.+|.++.||.++++.+........... ...... .+..++.+..+|.+..+|..++....
T Consensus 139 ~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W 214 (377)
T TIGR03300 139 SPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLW 214 (377)
T ss_pred cCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEee
Confidence 11112 346788888899999999999998877754332100 011112 23467788888999999988874322
Q ss_pred ecccCCccccccCccceeeeccccccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeE
Q 001790 666 RAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAE 745 (1012)
Q Consensus 666 ~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~ 745 (1012)
..-... +.+.. ..-++.+.
T Consensus 215 ~~~~~~---------------~~g~~--------------------------------------------~~~~~~~~-- 233 (377)
T TIGR03300 215 EQRVAL---------------PKGRT--------------------------------------------ELERLVDV-- 233 (377)
T ss_pred eecccc---------------CCCCC--------------------------------------------chhhhhcc--
Confidence 110000 00000 00000000
Q ss_pred EeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeeccCeeEeeeccccccCCCCCccccccceeeccCCCceeeecc
Q 001790 746 IVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDV 825 (1012)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 825 (1012)
...+ .+ .+..+++++.+|.+..||..+++ .+|....+
T Consensus 234 -----------------~~~p----~~--~~~~vy~~~~~g~l~a~d~~tG~-------------~~W~~~~~------- 270 (377)
T TIGR03300 234 -----------------DGDP----VV--DGGQVYAVSYQGRVAALDLRSGR-------------VLWKRDAS------- 270 (377)
T ss_pred -----------------CCcc----EE--ECCEEEEEEcCCEEEEEECCCCc-------------EEEeeccC-------
Confidence 0000 11 13456777778888888764332 23432210
Q ss_pred cCCCCCCCEeEEEEeeCCCEEEEEc-CCcEEEEEcCCCeEEEEEcCC-CCCeeEEEEecCCCcEEEEEeCCCeEEEEEcc
Q 001790 826 AGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSP-PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR 903 (1012)
Q Consensus 826 ~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~-~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~ 903 (1012)
.....+ .++..+++++ +|.+..+|..+++.+...... ......... .+..|++++.+|.|+++|..
T Consensus 271 -------~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l~~~~~~G~l~~~d~~ 338 (377)
T TIGR03300 271 -------SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV---VGGYLVVGDFEGYLHWLSRE 338 (377)
T ss_pred -------CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE---ECCEEEEEeCCCEEEEEECC
Confidence 011112 3455666655 899999999999887665321 122222333 23477889999999999999
Q ss_pred CCeEeEEecccCCCeEE-EEEcCCCCEEEEEeCCCcEEEE
Q 001790 904 VDEVKSKLKGHQKRITG-LAFSTSLNILVSSGADAQLCVW 942 (1012)
Q Consensus 904 ~~~~~~~~~~h~~~V~~-l~~spdg~~l~s~s~Dg~i~vw 942 (1012)
+|+.+.++..+...+.. .++. + ..|+.++.||.|+.+
T Consensus 339 tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 339 DGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred CCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 99999988866654333 2333 3 357788999988765
No 274
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=8.6e-11 Score=121.41 Aligned_cols=241 Identities=12% Similarity=0.216 Sum_probs=171.1
Q ss_pred eccCCCcceEEEEEccCCCEEEEEECCCeEEEEeecCC-Ccce---eeeeeeccccCeEEEEEeCCCCceEEEEEcCCCc
Q 001790 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS-NDLR---QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (1012)
Q Consensus 401 ~~~~h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~-~~~~---~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~ 476 (1012)
.+.||...|..++--.+.+-+++++.|++|++|.++.. ..+. ...++..|+.+|.++.|..+.+ +++++ ||.
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~g 805 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DGG 805 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cCc
Confidence 48899999999988788889999999999999998742 2222 4457889999999999999988 67665 899
Q ss_pred EEEEe-CCCcceeeec-----CCccCEEEEeccccCCceEEEEE-ecCCeEEEEEcCCCCceeee-----cCCCCcEEEE
Q 001790 477 IKVWE-LSGRKLFNFE-----GHEAPVYSICPHHKENIQFIFST-AIDGKIKAWLYDTMGSRVDY-----DAPGHWCTTM 544 (1012)
Q Consensus 477 v~vwd-~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~-~~dg~i~~wd~~~~~~~~~~-----~~~~~~v~~~ 544 (1012)
|.+|| .-|+++..+. +..+.|.++ ++-+..+++.+ +...+|+++|.+..+-...+ .+.+..+.++
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl---~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i 882 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCL---ENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI 882 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEec---ccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence 99999 7787775432 222334444 33344455555 77899999999887655443 3445678999
Q ss_pred EEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEE-EeCCCCeeEEEE
Q 001790 545 LYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF-WDMDNVNILTST 623 (1012)
Q Consensus 545 ~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~ 623 (1012)
++.+.|++++++-. .|.|.+.|.++|+.+..+..-.. ....++ .|..+.++....|.++.+ |....+......
T Consensus 883 aVa~~GN~lAa~LS----nGci~~LDaR~G~vINswrpmec-dllqla-apsdq~L~~saldHslaVnWhaldgimh~q~ 956 (1034)
T KOG4190|consen 883 AVADKGNKLAAALS----NGCIAILDARNGKVINSWRPMEC-DLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQD 956 (1034)
T ss_pred EeccCcchhhHHhc----CCcEEEEecCCCceeccCCcccc-hhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeecc
Confidence 99999999998874 89999999999998887765433 222222 255567777778888888 987777655544
Q ss_pred ecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEc
Q 001790 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1012)
Q Consensus 624 ~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~ 658 (1012)
..+.. +..- .-.-|..+++....+.+.+|.-
T Consensus 957 kpppe--pahf--lqsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 957 KPPPE--PAHF--LQSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred CCCCc--chhh--hhccCceeEEeccCcEEEEEec
Confidence 43322 1111 1124566777777777777754
No 275
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.19 E-value=1.1e-09 Score=115.78 Aligned_cols=193 Identities=13% Similarity=0.174 Sum_probs=152.3
Q ss_pred ccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEe------C------------CCCceEEEEEcCCCc
Q 001790 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFA------Y------------PNKLLCVVTCGDDKL 476 (1012)
Q Consensus 415 spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s------~------------~~~~~~l~s~~~d~~ 476 (1012)
.|.+.++|....||.++|||...++....+.....-.+..++..|. | .+....++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3567899999999999999999876544332222334445555552 1 122237888999999
Q ss_pred EEEEe-CCCcceeeec--CCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeE
Q 001790 477 IKVWE-LSGRKLFNFE--GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1012)
Q Consensus 477 v~vwd-~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 553 (1012)
|.+++ ..|+....+. +|.+.|.++.++. +-..|.+++.|+.+..|+.........+......+.+++++|||..+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~--~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQ--RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeeccc--ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 99999 7888777775 6999999998754 44689999999999999999988888888888899999999999999
Q ss_pred EEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecC-----CCEEEEE-eCCCcEEEEeCCC
Q 001790 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT-----QNHFLAV-GEDSQIKFWDMDN 616 (1012)
Q Consensus 554 ~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~-~~dg~i~iwd~~~ 616 (1012)
++++ +.|.+||+++++.+.+|.+|.. +|++++|.-+ |.+++++ ..+..+.+|-...
T Consensus 160 ~~as------~~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTAS------RQIKVLDIETKEVVITFTGHGS-PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eecc------ceEEEEEccCceEEEEecCCCc-ceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9874 5799999999999999999987 8999999876 6677664 3556677776543
No 276
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.18 E-value=1.6e-09 Score=114.51 Aligned_cols=201 Identities=14% Similarity=0.123 Sum_probs=154.1
Q ss_pred cCcceEEEeeccCeeEeeecccccc----CCCCCccccccceeeccCCCceeeecccCCCCCCCEeE----EEEeeCCCE
Q 001790 774 NSAVGLLALGSNGVQKLWKWHRNEQ----NPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPC----IALSKNDSY 845 (1012)
Q Consensus 774 ~~g~~l~~~~~dg~i~~w~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----~~~s~dg~~ 845 (1012)
|.+.+++....||.+++|+...+.. .|......+++...|.+.-+.. .....+ ...+.|-..
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s----------~~k~~~~~~~~~~s~~t~~ 72 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYS----------PMKWLSLEKAKKASLDTSM 72 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccc----------hHHHHhHHHHhhccCCceE
Confidence 4566788889999999999877543 3444444444455555322210 001111 112334445
Q ss_pred EEEEc-CCcEEEEEcCCCeEEEEEc--CCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeEEecccCCCeEEEE
Q 001790 846 VMSAT-GGKISLFNMMTFKVMTTFM--SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLA 922 (1012)
Q Consensus 846 la~~s-dg~i~lwd~~~~~~~~~~~--~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~ 922 (1012)
++-|. .|.|.+|++..|+....+. .|.+.|+++.++. +-..|.+++.|+.+..|+..+++.++.+.+....+.+++
T Consensus 73 lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~ 151 (541)
T KOG4547|consen 73 LVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLC 151 (541)
T ss_pred EEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccceEE
Confidence 66666 7999999999999988876 5889999999988 888999999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCCccccEEEecCCCCCCCCceEEEEcCC-----CCEEEEE--eCCeEEEEECCC
Q 001790 923 FSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD-----QVRMLVV--HETQLAIYDASK 993 (1012)
Q Consensus 923 ~spdg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d-----~~~l~~~--~d~~i~vwd~~~ 993 (1012)
.+|||..|++++ +.|++||+++++. +..+.||. ++|.+++|.-+ |.+++++ .+..+.+|-++.
T Consensus 152 is~D~~~l~~as--~~ik~~~~~~kev-----v~~ftgh~-s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 152 ISPDGKILLTAS--RQIKVLDIETKEV-----VITFTGHG-SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EcCCCCEEEecc--ceEEEEEccCceE-----EEEecCCC-cceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 999999999988 6799999999884 45566776 89999999988 8888886 466788886543
No 277
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.17 E-value=3.2e-08 Score=109.81 Aligned_cols=184 Identities=11% Similarity=0.056 Sum_probs=117.0
Q ss_pred EEEEEcCCCcEEEEe-CCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEE
Q 001790 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (1012)
Q Consensus 467 ~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 545 (1012)
.++.++.++.|..+| .+|+.+..+.-.......... ++..++.++.+|.+..+|.++++..+.............
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA----DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE----cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 577788889999999 899888665533321112222 345788888999999999999888877655433222222
Q ss_pred EccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCc----ceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEE
Q 001790 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS----NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT 621 (1012)
Q Consensus 546 ~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 621 (1012)
. .+..++.+. .++.++.||.++|+.+..+....... .....+. +..++.+..+|.+..+|..+|+.+.
T Consensus 143 v--~~~~v~v~~----~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W 214 (377)
T TIGR03300 143 V--ANGLVVVRT----NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLW 214 (377)
T ss_pred E--ECCEEEEEC----CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEee
Confidence 2 234555554 48899999999999887765432200 0111222 3477888889999999999998776
Q ss_pred EEecCCCC--C---CcceeEeec--CCCEEEEEECCCcEEEEEccCCc
Q 001790 622 STDAEGGL--P---NLPRLRFSK--EGNLLAVTTADNGFKILANAIGL 662 (1012)
Q Consensus 622 ~~~~~~~~--~---~v~~v~~s~--~g~~l~~~~~dg~i~iwd~~~~~ 662 (1012)
........ . .+..+.-+| .+..+++++.+|.++.||..++.
T Consensus 215 ~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~ 262 (377)
T TIGR03300 215 EQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGR 262 (377)
T ss_pred eeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCc
Confidence 54321110 0 000111111 35578888889999999987763
No 278
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.12 E-value=1e-08 Score=98.75 Aligned_cols=246 Identities=11% Similarity=0.055 Sum_probs=157.5
Q ss_pred CcceEEEEEcc---CCC-EEEEEECCCeEEEEeecCCCcceeeeeeecccc---CeEEEEEeCCCCceEEEEEcCCCcEE
Q 001790 406 PISVSRVAWSP---DGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVG---AVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1012)
Q Consensus 406 ~~~V~~v~~sp---dg~-~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~---~v~~l~~s~~~~~~~l~s~~~d~~v~ 478 (1012)
.+.+..+.|+- +|. .++-+..+|.|.++..........+..+..-.- ...++.|++.+. -++++-.+|.+.
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~--~i~vs~s~G~~~ 146 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGT--KIFVSDSRGSIS 146 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCc--eEEEEcCCCcEE
Confidence 45677777764 555 566777889999998765443322212222221 234678999888 688888899998
Q ss_pred EEe-CCCcc--eeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCc-eee-ecCCCCcEEEEEEcc-CCCe
Q 001790 479 VWE-LSGRK--LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVD-YDAPGHWCTTMLYSA-DGSR 552 (1012)
Q Consensus 479 vwd-~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-~~~-~~~~~~~v~~~~~s~-~~~~ 552 (1012)
+-+ ..... ++.++.|.-..+...|+.... +++++|+.|+.+..||++..+. ... ...|...|.++.-+| ++.+
T Consensus 147 ~v~~t~~~le~vq~wk~He~E~Wta~f~~~~p-nlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~ 225 (339)
T KOG0280|consen 147 GVYETEMVLEKVQTWKVHEFEAWTAKFSDKEP-NLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTY 225 (339)
T ss_pred EEecceeeeeecccccccceeeeeeecccCCC-ceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCce
Confidence 666 44433 347889999999999876543 7999999999999999994442 222 345667888888776 5778
Q ss_pred EEEeeecCCCCCcEEEEeCC-CCeeeeeecCCCCCcceEEEEecCCC-EEEEEeCCCcEEEEeCCCCeeE---EEEecCC
Q 001790 553 LFSCGTSKDGDSFLVEWNES-EGTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNVNIL---TSTDAEG 627 (1012)
Q Consensus 553 l~~~~~~~~~~~~i~lwd~~-~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~ 627 (1012)
+++|+. |..|++||.+ .++++..-.. .+.|..+..+|.-. .+++++.-+..+|-+.+.+... .......
T Consensus 226 I~TGsY----De~i~~~DtRnm~kPl~~~~v--~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~ 299 (339)
T KOG0280|consen 226 IATGSY----DECIRVLDTRNMGKPLFKAKV--GGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKI 299 (339)
T ss_pred EEEecc----ccceeeeehhcccCccccCcc--ccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeecccc
Confidence 899885 8899999998 4555544332 34788899888543 3344444445666666554322 1111122
Q ss_pred CCCCcceeEeecCCCEEEEEEC-CCcEE-EEEccC
Q 001790 628 GLPNLPRLRFSKEGNLLAVTTA-DNGFK-ILANAI 660 (1012)
Q Consensus 628 ~~~~v~~v~~s~~g~~l~~~~~-dg~i~-iwd~~~ 660 (1012)
+.+-+..-.|......+|+++. |+.++ +|-..+
T Consensus 300 hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 300 HDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred ccceeeccccccccceeeeeeccccceeeeeeecc
Confidence 2223444455444456888653 55544 665443
No 279
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.11 E-value=5.1e-10 Score=131.48 Aligned_cols=203 Identities=19% Similarity=0.291 Sum_probs=158.0
Q ss_pred eEeecCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC
Q 001790 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1012)
Q Consensus 338 ~~~~~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 417 (1012)
+...++-..|.++.=+|... +.+||+.||.|++|.+..++.+.. |+ ..|. +.|+.+.|+..
T Consensus 2202 ~~~k~~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~-----~r------------t~g~-s~vtr~~f~~q 2262 (2439)
T KOG1064|consen 2202 VMIKHPVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVC-----FR------------TAGN-SRVTRSRFNHQ 2262 (2439)
T ss_pred eEeecccCceeeecCCCCCc-eEEecCCCceEEEEeccCCCeEEE-----ee------------ccCc-chhhhhhhccc
Confidence 33444677899999999999 688999999999999988877643 11 2233 78999999999
Q ss_pred CCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEc---CCCcEEEEe--CCCcceeeecC
Q 001790 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG---DDKLIKVWE--LSGRKLFNFEG 492 (1012)
Q Consensus 418 g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~---~d~~v~vwd--~~~~~~~~~~~ 492 (1012)
|..+..+..||.+.+|.+.. +.+...+.|.....+.+|-. . .+++++ .++.+.+|| ..+..-..-..
T Consensus 2263 Gnk~~i~d~dg~l~l~q~~p----k~~~s~qchnk~~~Df~Fi~--s--~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~ 2334 (2439)
T KOG1064|consen 2263 GNKFGIVDGDGDLSLWQASP----KPYTSWQCHNKALSDFRFIG--S--LLATAGRSSDNRNVCLWDTLLPPMNSLVHTC 2334 (2439)
T ss_pred CCceeeeccCCceeecccCC----cceeccccCCccccceeeee--h--hhhccccCCCCCcccchhcccCcccceeeee
Confidence 99999999999999999873 33335778999999999986 3 566665 467999999 44433333378
Q ss_pred CccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCC
Q 001790 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (1012)
Q Consensus 493 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~ 572 (1012)
|.+.++++++.|. .++|++|+.+|.|++||++..+.+..+.. +. ...++++++. .|.++||++.
T Consensus 2335 H~~gaT~l~~~P~--~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss----~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2335 HDGGATVLAYAPK--HQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSS----EGNIKIWRLS 2398 (2439)
T ss_pred cCCCceEEEEcCc--ceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCc----ccceEEEEcc
Confidence 9999999999774 48999999999999999987766655543 33 4557777774 8999999999
Q ss_pred CCeeeeeecCC
Q 001790 573 EGTIKRTYAGF 583 (1012)
Q Consensus 573 ~~~~~~~~~~~ 583 (1012)
.-..+.++...
T Consensus 2399 ~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2399 EFGLLHTFPSE 2409 (2439)
T ss_pred ccchhhcCchh
Confidence 88877777643
No 280
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.10 E-value=1.6e-07 Score=115.26 Aligned_cols=74 Identities=12% Similarity=0.137 Sum_probs=60.2
Q ss_pred eeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeEEec-------------ccCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 001790 875 STFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK-------------GHQKRITGLAFSTSLNILVSSGADAQLCV 941 (1012)
Q Consensus 875 i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~~~-------------~h~~~V~~l~~spdg~~l~s~s~Dg~i~v 941 (1012)
...+++++ +|.++++-..++.|++||..++....... ++-.....|+++++|+++++-+.+++|++
T Consensus 806 P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv 884 (1057)
T PLN02919 806 PLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRY 884 (1057)
T ss_pred CceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence 45789999 88888888899999999998876653321 12235778999999999999999999999
Q ss_pred EeCCCCCc
Q 001790 942 WSIDTWEK 949 (1012)
Q Consensus 942 wd~~~~~~ 949 (1012)
||+.+++.
T Consensus 885 id~~~~~~ 892 (1057)
T PLN02919 885 LDLNKGEA 892 (1057)
T ss_pred EECCCCcc
Confidence 99998765
No 281
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.08 E-value=1.4e-08 Score=97.70 Aligned_cols=197 Identities=17% Similarity=0.120 Sum_probs=136.9
Q ss_pred CCceEEEEEec---CCCcEEEEecCCCeEEEEEccCCceecc-cccccccccccCccccceeccCCCcceEEEEEccCCC
Q 001790 344 GSTVISMDFHP---SHQTLLLVGSSNGEITLWELAMRDRLVS-KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1012)
Q Consensus 344 ~~~V~~~~~sp---dg~~llasg~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 419 (1012)
.+.+..|.|.- +|...++-+..+|.|.++.......... ..+...+ + ......++.|++.|.
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~k------------i--~~~~~lslD~~~~~~ 134 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKK------------I--SVVEALSLDISTSGT 134 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhh------------h--hheeeeEEEeeccCc
Confidence 44666666653 4554566677789999987643222110 1110000 0 011345788999999
Q ss_pred EEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-C-CCcceee-ecCCccC
Q 001790 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-SGRKLFN-FEGHEAP 496 (1012)
Q Consensus 420 ~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~-~~~~~~~-~~~h~~~ 496 (1012)
.++++..+|.+.+-+.... .+...+.+++|..+.+.+.|+....+ ++.+||.|+.+..|| . .++.+.. .+.|...
T Consensus 135 ~i~vs~s~G~~~~v~~t~~-~le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G 212 (339)
T KOG0280|consen 135 KIFVSDSRGSISGVYETEM-VLEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG 212 (339)
T ss_pred eEEEEcCCCcEEEEeccee-eeeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence 9999999999885554432 23333468899999999999987766 899999999999999 3 4555543 5678899
Q ss_pred EEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCC--eEEEee
Q 001790 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS--RLFSCG 557 (1012)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~ 557 (1012)
|.++.-++. .+.++++|+.|-.|++||.++......-....+.|..+..+|.-. .+++|-
T Consensus 213 V~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CM 274 (339)
T KOG0280|consen 213 VVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACM 274 (339)
T ss_pred eEEEecCCC-CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHH
Confidence 999986654 567999999999999999997666655555567899999998533 344443
No 282
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.06 E-value=7.2e-10 Score=130.22 Aligned_cols=201 Identities=12% Similarity=0.213 Sum_probs=164.6
Q ss_pred ccCCCcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe
Q 001790 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1012)
Q Consensus 402 ~~~h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd 481 (1012)
.+.|-..|.++.=+|...+-+||+.||.|++|....++.+....+. |. ..|+.+.|+.+|. .+..+..||.+.+|.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeecc
Confidence 4446678889999999999999999999999999999888765443 33 8899999999999 688888899999999
Q ss_pred CCCcceeeecCCccCEEEEeccccCCceEEEEEe---cCCeEEEEEcCCCCce-eeecCCCCcEEEEEEccCCCeEEEee
Q 001790 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA---IDGKIKAWLYDTMGSR-VDYDAPGHWCTTMLYSADGSRLFSCG 557 (1012)
Q Consensus 482 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~---~dg~i~~wd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~ 557 (1012)
.+.++....+.|........|.. ..+++++ .++.+.+||....... .....|.+.++++++.|..+.+++|+
T Consensus 2280 ~~pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2280 ASPKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred cCCcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecC
Confidence 77888888899998888888754 3566654 5688999986543322 23377888999999999999999999
Q ss_pred ecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEec
Q 001790 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1012)
Q Consensus 558 ~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1012)
++|.|++||++..+.+.++.. +. ...++++|+..|.++||++.....+..+..
T Consensus 2356 ----r~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2356 ----RKGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred ----CcCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 599999999998888877664 23 457899999999999999998877776654
No 283
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=99.00 E-value=0.00015 Score=82.32 Aligned_cols=602 Identities=13% Similarity=0.085 Sum_probs=295.0
Q ss_pred eEeecCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC
Q 001790 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1012)
Q Consensus 338 ~~~~~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 417 (1012)
+..++..+-..|+..-++| +|.+||.-|.=.+-.+.+.....+.. .+ + ..+. .-++|..++.-.+
T Consensus 300 ve~lge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gsy~-~i---------l--et~~-NLgPI~Dm~Vvd~ 364 (1096)
T KOG1897|consen 300 VEYLGETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGSYV-VI---------L--ETFV-NLGPIVDMCVVDL 364 (1096)
T ss_pred EEecCCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCchh-hh---------h--hhcc-cccceeeEEEEec
Confidence 3344556667777778888 68889887766666665543331110 00 0 0111 2347887776542
Q ss_pred ----CCEEEEEE---CCCeEEEEeecCCCcceeeeeeeccccCeEEEE--EeCCCCceEEEEEcCCCcEEEEeCCCccee
Q 001790 418 ----GNYVGVAF---TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLA--FAYPNKLLCVVTCGDDKLIKVWELSGRKLF 488 (1012)
Q Consensus 418 ----g~~las~~---~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~--~s~~~~~~~l~s~~~d~~v~vwd~~~~~~~ 488 (1012)
+..++||+ .||++++..-.-+-...-...+.| -..++.+. +.+.-.. +++.+-.+ .-++...+++...
T Consensus 365 d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~-ylvlsf~~-eTrvl~i~~e~ee 441 (1096)
T KOG1897|consen 365 DRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDN-YLVLSFIS-ETRVLNISEEVEE 441 (1096)
T ss_pred cccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCc-EEEEEecc-ceEEEEEccceEE
Confidence 24566664 578899876443322222223555 44577777 5443333 34433323 3344453343211
Q ss_pred -eecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEE
Q 001790 489 -NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1012)
Q Consensus 489 -~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 567 (1012)
...+.......+..+.- +++.|+-.. ...||+++-. .....+..... ++....+.+...++.++ +++.+.
T Consensus 442 ~~~~gf~~~~~Tif~S~i-~g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~~-~ti~~~~~n~sqVvvA~----~~~~l~ 512 (1096)
T KOG1897|consen 442 TEDPGFSTDEQTIFCSTI-NGNQLVQVT-SNSIRLVSSA--GLRSEWRPPGK-ITIGVVSANASQVVVAG----GGLALF 512 (1096)
T ss_pred eccccccccCceEEEEcc-CCceEEEEe-cccEEEEcch--hhhhcccCCCc-eEEEEEeecceEEEEec----CccEEE
Confidence 11222222223332222 222232222 3456776543 23333443443 33333444555566555 256666
Q ss_pred EEeCCCCeeeeeecCCCCCcceEEEEecCC------CEEEEEeCCCcEE-EEeCCCCeeEEEEecCCC--CCCcceeEee
Q 001790 568 EWNESEGTIKRTYAGFRKKSNGVVQFDTTQ------NHFLAVGEDSQIK-FWDMDNVNILTSTDAEGG--LPNLPRLRFS 638 (1012)
Q Consensus 568 lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~------~~l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~--~~~v~~v~~s 638 (1012)
..++..+.............+.|+.++|-+ +.+++|..+..+. +.-..+...+........ ...|.-..+-
T Consensus 513 y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e 592 (1096)
T KOG1897|consen 513 YLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFE 592 (1096)
T ss_pred EEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEee
Confidence 666666553333332233468888888742 2667776554443 333444444443322221 1123344555
Q ss_pred cCCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeeccccccccccCCCCCcccc------ccCCCCCC
Q 001790 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVE------RSSPVRPS 712 (1012)
Q Consensus 639 ~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~------~~~~~~~~ 712 (1012)
.|..+|.++..||.+.-+-+....-.....+..... ..|+.--.|+..++..+.+.+.....+- ...+....
T Consensus 593 ~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lG--t~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~k 670 (1096)
T KOG1897|consen 593 GDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLG--TQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLK 670 (1096)
T ss_pred ccceEEEEEcCCceEEEEEEEcccceEccccccccC--CCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchH
Confidence 568899999999998776554332121111111110 1122222333222222111111110000 00000000
Q ss_pred ccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeeccCeeEeee
Q 001790 713 PIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 792 (1012)
Q Consensus 713 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~ 792 (1012)
............-...++.+.. +.+++..++.. +.+...++| -......+++.+....+.+.+.......
T Consensus 671 ev~~~c~f~s~a~~d~l~~~~~-~~l~i~tid~i---qkl~irtvp----l~~~prrI~~q~~sl~~~v~s~r~e~~~-- 740 (1096)
T KOG1897|consen 671 EVNHMCPFNSDAYPDSLASANG-GALTIGTIDEI---QKLHIRTVP----LGESPRRICYQESSLTFGVLSNRIESSA-- 740 (1096)
T ss_pred HhhhhcccccccCCceEEEecC-CceEEEEecch---hhcceeeec----CCCChhheEecccceEEEEEecccccch--
Confidence 0000000001111122222222 44444444331 222222222 2334566777774444444433211110
Q ss_pred ccccccCCCCCccccccceeeccCCCceeee-cccCCCCCCCEeEEEEeeC-CCEEEEEc-----------CCcEEEEEc
Q 001790 793 WHRNEQNPSGKATASAVPQHWLPSSGLLMAN-DVAGVNLEEAVPCIALSKN-DSYVMSAT-----------GGKISLFNM 859 (1012)
Q Consensus 793 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~d-g~~la~~s-----------dg~i~lwd~ 859 (1012)
+ .-++......++++|..+-+.+.. .+........+.++.|..| +.++++|. .|.|.+|..
T Consensus 741 ----~--~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~ 814 (1096)
T KOG1897|consen 741 ----E--YYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEF 814 (1096)
T ss_pred ----h--hcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEE
Confidence 0 011222223456667666554332 2222112223444458777 78888772 277888888
Q ss_pred CCCeEEEEEcC--CCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeEEecccCCCeEEEEEcCCCCEEEEEeCCC
Q 001790 860 MTFKVMTTFMS--PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADA 937 (1012)
Q Consensus 860 ~~~~~~~~~~~--~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg 937 (1012)
..+..+..... -.+.+.++..- +|++||.- +..|++|+..+.+.++.-..|..++..+...-.|..++.|.-=+
T Consensus 815 ~e~~~L~~v~e~~v~Gav~aL~~f--ngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~ 890 (1096)
T KOG1897|consen 815 EELNSLELVAETVVKGAVYALVEF--NGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMR 890 (1096)
T ss_pred ecCCceeeeeeeeeccceeehhhh--CCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccc
Confidence 77433333322 23455555443 67777643 56899999999977777778889999999999999999999888
Q ss_pred cEEEEeCCCCCccccEEEecCCCCCCCCceEEEEcCCCCEEEEEeCCeEEEEEC
Q 001790 938 QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDA 991 (1012)
Q Consensus 938 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~d~~i~vwd~ 991 (1012)
.+.+...+..+-. .........+...+++.+-.+..++.+-.+|.+.+-..
T Consensus 891 Sitll~y~~~eg~---f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~ 941 (1096)
T KOG1897|consen 891 SITLLQYKGDEGN---FEEVARDYNPNWMTAVEILDDDTYLGAENSGNLFTVRK 941 (1096)
T ss_pred eEEEEEEeccCCc---eEEeehhhCccceeeEEEecCceEEeecccccEEEEEe
Confidence 8776665554321 22233333446788888888888877766676666543
No 284
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.98 E-value=3.2e-07 Score=112.59 Aligned_cols=246 Identities=15% Similarity=0.126 Sum_probs=160.5
Q ss_pred EEEEEccC-CCEEEEEECCCeEEEEeecCCCcceeeeeee-----------ccccCeEEEEEeCCCCceEEEEEcCCCcE
Q 001790 410 SRVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQID-----------AHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1012)
Q Consensus 410 ~~v~~spd-g~~las~~~d~~v~vwd~~~~~~~~~~~~l~-----------~h~~~v~~l~~s~~~~~~~l~s~~~d~~v 477 (1012)
..++++++ |+++++-+.++.|++||..+ ..+....... ++-.....+++.+++.. ++++-...+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~-LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNL-LYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCE-EEEEeCCCceE
Confidence 46889875 66667767788899999865 3222111000 01123578999998873 23444445789
Q ss_pred EEEeCCCcceeeecCC-----------------ccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecC----
Q 001790 478 KVWELSGRKLFNFEGH-----------------EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA---- 536 (1012)
Q Consensus 478 ~vwd~~~~~~~~~~~h-----------------~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~---- 536 (1012)
+++|..+..+.++.+- -.....+++++. ++.++++.+.++.|++||..++.... +.+
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~-~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~ 726 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV-NEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYE 726 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecC-CCeEEEEECCCCeEEEEECCCCeEEE-EecCCcc
Confidence 9999544455554321 012356777653 44677777888999999987654321 111
Q ss_pred -----------CCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCC------------C--------C
Q 001790 537 -----------PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF------------R--------K 585 (1012)
Q Consensus 537 -----------~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~------------~--------~ 585 (1012)
.......++++|+|+.|+++.. +++.|++||+.++.......+. . .
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs---~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l 803 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADS---ESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLL 803 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEEC---CCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhc
Confidence 1124567999999997776654 5789999999876532111000 0 0
Q ss_pred CcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecC-----------CCCCCcceeEeecCCCEEEEEECCCcEE
Q 001790 586 KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE-----------GGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (1012)
Q Consensus 586 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------~~~~~v~~v~~s~~g~~l~~~~~dg~i~ 654 (1012)
.....++++++|+.+++-+.++.|++||..++......... ........++++++|+.+++-+.++.|+
T Consensus 804 ~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Ir 883 (1057)
T PLN02919 804 QHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIR 883 (1057)
T ss_pred cCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEE
Confidence 12357899999998888889999999999887665433210 1112467899999999888888899999
Q ss_pred EEEccCCc
Q 001790 655 ILANAIGL 662 (1012)
Q Consensus 655 iwd~~~~~ 662 (1012)
+||+.++.
T Consensus 884 vid~~~~~ 891 (1057)
T PLN02919 884 YLDLNKGE 891 (1057)
T ss_pred EEECCCCc
Confidence 99998763
No 285
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.98 E-value=6.8e-09 Score=111.65 Aligned_cols=270 Identities=16% Similarity=0.255 Sum_probs=180.4
Q ss_pred ceEeecCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCce----ec--------------------------ccccc
Q 001790 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDR----LV--------------------------SKPFK 386 (1012)
Q Consensus 337 ~~~~~~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~----~~--------------------------~~~~~ 386 (1012)
....+.-.+++.++.++|.|+. +|.++.-|.. +-|+...-. ++ ...--
T Consensus 17 kslsl~v~~~~~a~si~p~grd-i~lAsr~gl~-i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkai 94 (1081)
T KOG0309|consen 17 KSLSLKVDGGFNAVSINPSGRD-IVLASRQGLY-IIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAI 94 (1081)
T ss_pred ceeEEEecCcccceeeccccch-hhhhhhcCeE-EEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhh
Confidence 3444555678888888998885 6666655533 334432110 00 02223
Q ss_pred cccccccCccccceeccCCCcceEEEEEcc-CCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCc
Q 001790 387 IWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKL 465 (1012)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~ 465 (1012)
+|+++.+......-++.||+..|+.+.|.| .-..+|+++.|..|..||+.+.... +.........-..++|+....
T Consensus 95 iwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p--~ys~~~w~s~asqVkwnyk~p- 171 (1081)
T KOG0309|consen 95 IWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRP--FYSTSSWRSAASQVKWNYKDP- 171 (1081)
T ss_pred hhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcc--eeeeecccccCceeeecccCc-
Confidence 566666666666678999999999999999 4568999999999999999986533 223444555677899988766
Q ss_pred eEEEEEcCCCcEEEEe--CCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeec-CCCCcEE
Q 001790 466 LCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-APGHWCT 542 (1012)
Q Consensus 466 ~~l~s~~~d~~v~vwd--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-~~~~~v~ 542 (1012)
.+.+.+..+.|.+|| ..+.++..+++|...|+.+.|..... ..+.+++.||+|++||.+......... ....++.
T Consensus 172 -~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw 249 (1081)
T KOG0309|consen 172 -NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIW 249 (1081)
T ss_pred -chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceeccccCcce
Confidence 355566688999999 56678899999999999998865433 467899999999999987654443322 2344666
Q ss_pred EEEEccCCCeEEEeeecCCCCCcEEEE---------eCCC-CeeeeeecCCCCCcceEEEEec--------C--CCEEEE
Q 001790 543 TMLYSADGSRLFSCGTSKDGDSFLVEW---------NESE-GTIKRTYAGFRKKSNGVVQFDT--------T--QNHFLA 602 (1012)
Q Consensus 543 ~~~~s~~~~~l~~~~~~~~~~~~i~lw---------d~~~-~~~~~~~~~~~~~~v~~~~~s~--------~--~~~l~~ 602 (1012)
.-.+.|-|+-...--.. ++..+.++ +..+ .+.+.+|.||.+ .|...-|-. + .-.|++
T Consensus 250 ~~r~~Pfg~g~~~mp~~--G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D-~V~eFlWR~r~e~~~d~d~rdfQLVT 326 (1081)
T KOG0309|consen 250 RGRYLPFGEGYCIMPMV--GGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD-VVLEFLWRKRKECDGDYDSRDFQLVT 326 (1081)
T ss_pred eccccccCceeEecccc--CCeeeeeccccchhhhhccccCCcceeeecCcch-HHHHHhhhhcccccCCCCccceeEEE
Confidence 66677755533322111 13334433 3332 467889999987 443332221 1 236899
Q ss_pred EeCCCcEEEEeCCC
Q 001790 603 VGEDSQIKFWDMDN 616 (1012)
Q Consensus 603 ~~~dg~i~iwd~~~ 616 (1012)
-+.|..+++|.+.+
T Consensus 327 WSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 327 WSKDQTLRLWPIDS 340 (1081)
T ss_pred eecCCceEeeeccH
Confidence 99999999998754
No 286
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.90 E-value=4.5e-07 Score=100.03 Aligned_cols=206 Identities=16% Similarity=0.119 Sum_probs=125.0
Q ss_pred ceEEEEEecCcce-EEEeecc-CeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCC
Q 001790 766 KVVRLLYTNSAVG-LLALGSN-GVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKND 843 (1012)
Q Consensus 766 ~i~~l~~s~~g~~-l~~~~~d-g~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 843 (1012)
.+....|+|||+. ++..+.+ +.-.+| ++++.+|+.... .. ..+......|||||
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iy--------------------v~dl~tg~~~~l--t~--~~g~~~~~~~SPDG 244 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLY--------------------KYNLYTGKKEKI--AS--SQGMLVVSDVSKDG 244 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEE--------------------EEECCCCcEEEE--ec--CCCcEEeeEECCCC
Confidence 5678899999985 5544433 232333 223444432221 11 33445667899999
Q ss_pred CEEEEEc--C--CcEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEEeC-CC--eEEEEEccCCeEeEEecccCC
Q 001790 844 SYVMSAT--G--GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE-DS--TIHIYNVRVDEVKSKLKGHQK 916 (1012)
Q Consensus 844 ~~la~~s--d--g~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~~-dg--~v~iwd~~~~~~~~~~~~h~~ 916 (1012)
+.++... + ..|.++|+.+++.. .+..+........|+| ||+.|+..+. .+ .|+++|+.+++....... +
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g 320 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH--G 320 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECC-CCCEEEEEECCCCCceEEEEECCCCCeEeCccC--C
Confidence 9887553 3 45888898887654 3443333334568999 7877666653 33 688889888776433321 1
Q ss_pred CeEEEEEcCCCCEEEEEeCC---------CcEEEEeCCCCCccccEEEecCCCCCCCCceEEEEcCCCCEEEEEe----C
Q 001790 917 RITGLAFSTSLNILVSSGAD---------AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH----E 983 (1012)
Q Consensus 917 ~V~~l~~spdg~~l~s~s~D---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~----d 983 (1012)
. ....|||||++|+..+.. ..|.+.|+++++.. .+..+ .......|+|||+.|+... .
T Consensus 321 ~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-----~LT~~---~~~~~p~~SPDG~~I~f~~~~~~~ 391 (419)
T PRK04043 321 K-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-----RLTAN---GVNQFPRFSSDGGSIMFIKYLGNQ 391 (419)
T ss_pred C-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-----ECCCC---CCcCCeEECCCCCEEEEEEccCCc
Confidence 1 124899999998877654 36888899887632 12222 1224689999999888862 2
Q ss_pred CeEEEEECCCceEEEeec--CCCeeEEE
Q 001790 984 TQLAIYDASKMERIRQVG--SPHICSII 1009 (1012)
Q Consensus 984 ~~i~vwd~~~~~~~~~~~--~~~i~~~~ 1009 (1012)
..+.+.+++. .....+. .+.+..-+
T Consensus 392 ~~L~~~~l~g-~~~~~l~~~~g~~~~p~ 418 (419)
T PRK04043 392 SALGIIRLNY-NKSFLFPLKVGKIQSID 418 (419)
T ss_pred EEEEEEecCC-CeeEEeecCCCccCCCC
Confidence 2477888754 3333342 25555443
No 287
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=8.2e-09 Score=107.07 Aligned_cols=289 Identities=10% Similarity=0.111 Sum_probs=181.4
Q ss_pred ecCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCE
Q 001790 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1012)
Q Consensus 341 ~~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 420 (1012)
.+|...|.+++--.+.+ -++++++|.+|++|.++........ ..| .-++..|..+|.++.|-.|-++
T Consensus 732 ~GH~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~t-------saC-----QfTY~aHkk~i~~igfL~~lr~ 798 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGT-------SAC-----QFTYQAHKKPIHDIGFLADLRS 798 (1034)
T ss_pred cCcHHHhHHHHhccccc-ceeeccCCceEEEEEeccccCcccc-------cee-----eeEhhhccCcccceeeeeccce
Confidence 45888888887665665 3788999999999999753321110 011 1236679999999999999999
Q ss_pred EEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCC-CCceEEEEEcCCCcEEEEe-CCCcceeeec-----CC
Q 001790 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP-NKLLCVVTCGDDKLIKVWE-LSGRKLFNFE-----GH 493 (1012)
Q Consensus 421 las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~-~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~-----~h 493 (1012)
++++ ||.|.+||.--|..+.+...-..| +.+..+..-++ .+.++++.|+...+|+++| ..++....++ +.
T Consensus 799 i~Sc--D~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~P 875 (1034)
T KOG4190|consen 799 IASC--DGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGP 875 (1034)
T ss_pred eeec--cCcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCC
Confidence 9876 788999998877665533222222 23333333343 3444566668899999999 7777665553 34
Q ss_pred ccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEE-EeCC
Q 001790 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE-WNES 572 (1012)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~l-wd~~ 572 (1012)
.+.+.++++.+ .|+.++.+-.+|.|.+.|.+++..+-.+..-.-....++ .|..+.++... -+..+.+ |...
T Consensus 876 na~~R~iaVa~--~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~sa----ldHslaVnWhal 948 (1034)
T KOG4190|consen 876 NALTRAIAVAD--KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSA----LDHSLAVNWHAL 948 (1034)
T ss_pred chheeEEEecc--CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhc----ccceeEeeehhc
Confidence 45688888866 456899999999999999998876665544333222222 23444455443 2666766 8766
Q ss_pred CCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCC----CeeEEEEecCCCCCCcceeEeecCCCEEEEEE
Q 001790 573 EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN----VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1012)
Q Consensus 573 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~ 648 (1012)
.|........... +..-+ -.-|..++++.....+.+|.-.. ...+..+......+..++++.-|-+.-+..|.
T Consensus 949 dgimh~q~kpppe-pahfl--qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGn 1025 (1034)
T KOG4190|consen 949 DGIMHLQDKPPPE-PAHFL--QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGN 1025 (1034)
T ss_pred CCeeeeccCCCCc-chhhh--hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccC
Confidence 6655444433222 11111 11245667776666777774211 12223333333334567888888777777888
Q ss_pred CCCcEEE
Q 001790 649 ADNGFKI 655 (1012)
Q Consensus 649 ~dg~i~i 655 (1012)
..|.|.+
T Consensus 1026 e~G~IaL 1032 (1034)
T KOG4190|consen 1026 EHGAIAL 1032 (1034)
T ss_pred CCCceee
Confidence 8888765
No 288
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.89 E-value=3.8e-07 Score=100.01 Aligned_cols=219 Identities=16% Similarity=0.157 Sum_probs=131.1
Q ss_pred EEEEEccCCCEEEEEE----CCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCC
Q 001790 410 SRVAWSPDGNYVGVAF----TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1012)
Q Consensus 410 ~~v~~spdg~~las~~----~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~ 484 (1012)
+-..|+|...++|+++ ..|.|.|| .++|++-+.. +..-| +++++|+|..- +|+.|=.-|.+.+|. .+.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~V-t~P~h---atSLCWHpe~~--vLa~gwe~g~~~v~~~~~~ 91 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDV-TYPVH---ATSLCWHPEEF--VLAQGWEMGVSDVQKTNTT 91 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCccc-cccee---hhhhccChHHH--HHhhccccceeEEEecCCc
Confidence 3357999999999886 45778888 4566644321 22223 56799999876 788888899999999 444
Q ss_pred cceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecC--C--CC--cEEEEEEccCCCeE-----
Q 001790 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA--P--GH--WCTTMLYSADGSRL----- 553 (1012)
Q Consensus 485 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~--~--~~--~v~~~~~s~~~~~l----- 553 (1012)
+.-.....|..+|..+.|++ +|..++++..-|.+.+|..+..+....... | +. ...+...++++.-+
T Consensus 92 e~htv~~th~a~i~~l~wS~--~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laK 169 (1416)
T KOG3617|consen 92 ETHTVVETHPAPIQGLDWSH--DGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAK 169 (1416)
T ss_pred eeeeeccCCCCCceeEEecC--CCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhh
Confidence 44344457999999999976 667999999999999998875443332211 1 11 23344456664322
Q ss_pred -EEeeecCCCCCcEE-EEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCC
Q 001790 554 -FSCGTSKDGDSFLV-EWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN 631 (1012)
Q Consensus 554 -~~~~~~~~~~~~i~-lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1012)
++.+ | +..+- .++.+.....+... =.-.|+|..++.++.+|+|+-.|- +|+..........
T Consensus 170 aaVtg---D-e~alD~~fnwk~~~a~rs~~---------ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~--- 232 (1416)
T KOG3617|consen 170 AAVTG---D-ESALDEPFNWKESLAERSDE---------KSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSE--- 232 (1416)
T ss_pred hhccC---c-hhhhcccccCccchhhcccc---------ccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccch---
Confidence 2222 1 22221 22221111111110 112477888999999999988874 4555555544321
Q ss_pred cceeEeecCCCEEEEEECCCcEEE
Q 001790 632 LPRLRFSKEGNLLAVTTADNGFKI 655 (1012)
Q Consensus 632 v~~v~~s~~g~~l~~~~~dg~i~i 655 (1012)
..+-|.+.-.-+++...+-++.+
T Consensus 233 -vQmLf~~~~eai~~i~e~lr~~l 255 (1416)
T KOG3617|consen 233 -VQMLFMGYCEAISIIIEFLRDCL 255 (1416)
T ss_pred -HHHHHhcccceEEEEeeeceeeE
Confidence 34556664444544444434333
No 289
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.88 E-value=6.5e-07 Score=98.81 Aligned_cols=197 Identities=14% Similarity=0.012 Sum_probs=118.8
Q ss_pred CceEEEEEecCCCcEEEEecC---CCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE
Q 001790 345 STVISMDFHPSHQTLLLVGSS---NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1012)
Q Consensus 345 ~~V~~~~~spdg~~llasg~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 421 (1012)
+.+....|||||+++++..+. +..|.++|+.+|+... +....+.+....|||||+.|
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt~~~g~~~~~~~SPDG~~l 247 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IASSQGMLVVSDVSKDGSKL 247 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------EecCCCcEEeeEECCCCCEE
Confidence 378899999999863443222 3578899998876532 22244556678899999988
Q ss_pred EEEE-CC--CeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCC--cEEEEeCCCcceeeecCCccC
Q 001790 422 GVAF-TK--HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKVWELSGRKLFNFEGHEAP 496 (1012)
Q Consensus 422 as~~-~d--~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~--~v~vwd~~~~~~~~~~~h~~~ 496 (1012)
+... .+ ..|.++|+.+++..+ +..+........|+|||+.+++.+ ...+ .|.+.|..+.....+......
T Consensus 248 a~~~~~~g~~~Iy~~dl~~g~~~~----LT~~~~~d~~p~~SPDG~~I~F~S-dr~g~~~Iy~~dl~~g~~~rlt~~g~~ 322 (419)
T PRK04043 248 LLTMAPKGQPDIYLYDTNTKTLTQ----ITNYPGIDVNGNFVEDDKRIVFVS-DRLGYPNIFMKKLNSGSVEQVVFHGKN 322 (419)
T ss_pred EEEEccCCCcEEEEEECCCCcEEE----cccCCCccCccEECCCCCEEEEEE-CCCCCceEEEEECCCCCeEeCccCCCc
Confidence 7543 23 468888888775332 333443344568999999644443 3333 577777433333333221111
Q ss_pred EEEEeccccCCceEEEEEecC---------CeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEE
Q 001790 497 VYSICPHHKENIQFIFSTAID---------GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1012)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~d---------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 567 (1012)
...|+| +|+.++..+.. ..|.+.|++++.... +... .......|+|||+.++..... .+...+.
T Consensus 323 --~~~~SP--DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~~-~~~~~L~ 395 (419)
T PRK04043 323 --NSSVST--YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKYL-GNQSALG 395 (419)
T ss_pred --CceECC--CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEcc-CCcEEEE
Confidence 235655 56666655543 257777877765433 2222 233468899999998887643 2344566
Q ss_pred EEeCCC
Q 001790 568 EWNESE 573 (1012)
Q Consensus 568 lwd~~~ 573 (1012)
+.++..
T Consensus 396 ~~~l~g 401 (419)
T PRK04043 396 IIRLNY 401 (419)
T ss_pred EEecCC
Confidence 677644
No 290
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.88 E-value=1.7e-06 Score=96.23 Aligned_cols=308 Identities=9% Similarity=0.036 Sum_probs=172.8
Q ss_pred eEEEEEecCCeEEEEEcCCCCceeeecCCCC----------cE-EEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeee
Q 001790 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH----------WC-TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1012)
Q Consensus 509 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~----------~v-~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~ 577 (1012)
..++.++.+|.+..+|.++++..+....... .+ ..+.. ++..+++++ .++.++.+|.++|+.+
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~----~~g~l~ald~~tG~~~ 143 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGS----EKGQVYALNAEDGEVA 143 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEc----CCCEEEEEECCCCCCc
Confidence 3677777788888888888887776554321 00 01111 344566655 4788999999999988
Q ss_pred eeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeec--CCCEEEEEECCCcEEE
Q 001790 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK--EGNLLAVTTADNGFKI 655 (1012)
Q Consensus 578 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~--~g~~l~~~~~dg~i~i 655 (1012)
........ ......+ .+..+++++.+|.++.+|..+|+.+.............. .-+| .+..++.++.+|.+..
T Consensus 144 W~~~~~~~-~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~-~~sP~v~~~~v~~~~~~g~v~a 219 (394)
T PRK11138 144 WQTKVAGE-ALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG-ESAPATAFGGAIVGGDNGRVSA 219 (394)
T ss_pred ccccCCCc-eecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC-CCCCEEECCEEEEEcCCCEEEE
Confidence 77654322 1111122 245777888899999999999999887764321000000 0112 2345777788888988
Q ss_pred EEccCCceeeecccCCccccccCccceeeeccccccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCccccccc
Q 001790 656 LANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVT 735 (1012)
Q Consensus 656 wd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 735 (1012)
+|..++......-... +.+..
T Consensus 220 ~d~~~G~~~W~~~~~~---------------~~~~~-------------------------------------------- 240 (394)
T PRK11138 220 VLMEQGQLIWQQRISQ---------------PTGAT-------------------------------------------- 240 (394)
T ss_pred EEccCChhhheecccc---------------CCCcc--------------------------------------------
Confidence 8887774322110000 00000
Q ss_pred CCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeeccCeeEeeeccccccCCCCCccccccceeecc
Q 001790 736 DKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLP 815 (1012)
Q Consensus 736 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~ 815 (1012)
..-++++. ...++ + .+..+++++.+|.+..+|..+++ .+|..
T Consensus 241 ~~~~~~~~-------------------~~sP~----v--~~~~vy~~~~~g~l~ald~~tG~-------------~~W~~ 282 (394)
T PRK11138 241 EIDRLVDV-------------------DTTPV----V--VGGVVYALAYNGNLVALDLRSGQ-------------IVWKR 282 (394)
T ss_pred chhccccc-------------------CCCcE----E--ECCEEEEEEcCCeEEEEECCCCC-------------EEEee
Confidence 00000000 00111 1 12345556667777776654322 23432
Q ss_pred CCCceeeecccCCCCCCCEeEEEEeeCCCEEEEEc-CCcEEEEEcCCCeEEEEEcCCC-CCeeEEEEecCCCcEEEEEeC
Q 001790 816 SSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPP-PASTFLAFHPQDNNIIAIGTE 893 (1012)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~las~~~ 893 (1012)
..+ . ...+. .++..+.+++ +|.+..+|..+|+.+....... .......+. + .+|+.++.
T Consensus 283 ~~~-----------~---~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~-g~l~v~~~ 343 (394)
T PRK11138 283 EYG-----------S---VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--N-GYLVVGDS 343 (394)
T ss_pred cCC-----------C---ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--C-CEEEEEeC
Confidence 211 0 01112 2344555555 8999999999998766543211 112223332 3 35677899
Q ss_pred CCeEEEEEccCCeEeEEecccCCCeEE-EEEcCCCCEEEEEeCCCcEEEEeC
Q 001790 894 DSTIHIYNVRVDEVKSKLKGHQKRITG-LAFSTSLNILVSSGADAQLCVWSI 944 (1012)
Q Consensus 894 dg~v~iwd~~~~~~~~~~~~h~~~V~~-l~~spdg~~l~s~s~Dg~i~vwd~ 944 (1012)
||.|++.|..+|+.+.+.+-....+.+ ..+ .+..|+.++.||.|+.+++
T Consensus 344 ~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 344 EGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 999999999999988877543333332 222 2447788899999887764
No 291
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.87 E-value=1.8e-06 Score=87.15 Aligned_cols=235 Identities=14% Similarity=0.140 Sum_probs=155.0
Q ss_pred ceEEEEEecCCCcEEEEecCCC-eEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEE
Q 001790 346 TVISMDFHPSHQTLLLVGSSNG-EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1012)
Q Consensus 346 ~V~~~~~spdg~~llasg~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 424 (1012)
..-.++.+|+....++.+-.-| ...+||..+++...... .-..+.|.|| -.||+||++|.+.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-----------a~~gRHFyGH------g~fs~dG~~LytT 68 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-----------APPGRHFYGH------GVFSPDGRLLYTT 68 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-----------CCCCCEEecC------EEEcCCCCEEEEe
Confidence 3456788896665788877666 57799999998764311 1133457777 5899999999987
Q ss_pred EC-----CCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEc----------------CCCcEEEEe-C
Q 001790 425 FT-----KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG----------------DDKLIKVWE-L 482 (1012)
Q Consensus 425 ~~-----d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~----------------~d~~v~vwd-~ 482 (1012)
-. .|.|-|||... .+....++..|.-.-..+.+.|||+.+.++-|+ .+-++..-| .
T Consensus 69 End~~~g~G~IgVyd~~~--~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~ 146 (305)
T PF07433_consen 69 ENDYETGRGVIGVYDAAR--GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR 146 (305)
T ss_pred ccccCCCcEEEEEEECcC--CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC
Confidence 43 47899999993 234444677777778889999999864444443 223456677 8
Q ss_pred CCcceee--e--cCCccCEEEEeccccCCceEEEEEecCCe-------EEEEEcCCCCceeeec-------CCCCcEEEE
Q 001790 483 SGRKLFN--F--EGHEAPVYSICPHHKENIQFIFSTAIDGK-------IKAWLYDTMGSRVDYD-------APGHWCTTM 544 (1012)
Q Consensus 483 ~~~~~~~--~--~~h~~~v~~~~~~~~~~~~~l~s~~~dg~-------i~~wd~~~~~~~~~~~-------~~~~~v~~~ 544 (1012)
+|+.+.. + ..|...|..+++.. +|..++..-..|. +-+++ .++....+. .-.+.+-+|
T Consensus 147 sG~ll~q~~Lp~~~~~lSiRHLa~~~--~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSI 222 (305)
T PF07433_consen 147 SGALLEQVELPPDLHQLSIRHLAVDG--DGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSI 222 (305)
T ss_pred CCceeeeeecCccccccceeeEEecC--CCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEE
Confidence 8887765 4 34777899999865 4444444332221 33332 222222222 223578999
Q ss_pred EEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEE
Q 001790 545 LYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF 611 (1012)
Q Consensus 545 ~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 611 (1012)
++++++..+++.+. ..+.+.+||..+++.+...... .+..++..+++ ++..+..|.+..
T Consensus 223 a~~~~g~~ia~tsP---rGg~~~~~d~~tg~~~~~~~l~---D~cGva~~~~~--f~~ssG~G~~~~ 281 (305)
T PF07433_consen 223 AADRDGRLIAVTSP---RGGRVAVWDAATGRLLGSVPLP---DACGVAPTDDG--FLVSSGQGQLIR 281 (305)
T ss_pred EEeCCCCEEEEECC---CCCEEEEEECCCCCEeeccccC---ceeeeeecCCc--eEEeCCCccEEE
Confidence 99999999988775 6889999999999988776643 34445555554 444444555443
No 292
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.84 E-value=1.2e-06 Score=88.28 Aligned_cols=171 Identities=13% Similarity=0.169 Sum_probs=123.1
Q ss_pred EEEEeeCCCEEEEEc------CCcEEEEEcC-CCeEEEEEcCCCCCeeEEEEecCCCcEEEEEe----------------
Q 001790 836 CIALSKNDSYVMSAT------GGKISLFNMM-TFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT---------------- 892 (1012)
Q Consensus 836 ~~~~s~dg~~la~~s------dg~i~lwd~~-~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~---------------- 892 (1012)
.-+||+||++|.+.- .|.|-|||.. +.+.+.++..|.-..-.+.+.| |++.|+++-
T Consensus 55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl 133 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNL 133 (305)
T ss_pred CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecCh
Confidence 468999999999873 3679999998 6788888888776777888999 887777653
Q ss_pred --CCCeEEEEEccCCeEeEE--e--cccCCCeEEEEEcCCCCEEEEEeCCCc-------EEEEeCCCCCccccEEEe--c
Q 001790 893 --EDSTIHIYNVRVDEVKSK--L--KGHQKRITGLAFSTSLNILVSSGADAQ-------LCVWSIDTWEKRKSVTIH--I 957 (1012)
Q Consensus 893 --~dg~v~iwd~~~~~~~~~--~--~~h~~~V~~l~~spdg~~l~s~s~Dg~-------i~vwd~~~~~~~~~~~~~--~ 957 (1012)
.+-++...|..+|+++.+ + .-|...|..+++.++|..++..-..|. |.+++-.. ....+... .
T Consensus 134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~ 211 (305)
T PF07433_consen 134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQ 211 (305)
T ss_pred hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHH
Confidence 122566778888988877 4 338889999999999987776544332 44444333 21111110 0
Q ss_pred CCCCCCCCceEEEEcCCCCEEEEE--eCCeEEEEECCCceEEEeecCCCeeEEEe
Q 001790 958 PAGKTPTGDTRVQFNADQVRMLVV--HETQLAIYDASKMERIRQVGSPHICSIIF 1010 (1012)
Q Consensus 958 ~~~~~~~~v~~l~fs~d~~~l~~~--~d~~i~vwd~~~~~~~~~~~~~~i~~~~f 1010 (1012)
...-. ..+-+|++++++.+++++ ..+.+.+||..+|+.+....-..++.++-
T Consensus 212 ~~~l~-~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~ 265 (305)
T PF07433_consen 212 WRRLN-GYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDACGVAP 265 (305)
T ss_pred HHhhC-CceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCceeeeee
Confidence 01111 678999999999999887 47899999999999998887666666653
No 293
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.83 E-value=2.9e-09 Score=116.52 Aligned_cols=217 Identities=16% Similarity=0.238 Sum_probs=161.1
Q ss_pred eeccCCCcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCC-cEE
Q 001790 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-LIK 478 (1012)
Q Consensus 400 ~~~~~h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~-~v~ 478 (1012)
+.+..|....+|++||-+.+.|+.|+..|.|+++++.+|.... ...+|..+|+-+.=+.||.. .|.+++... -..
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~-~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST-QLTSSSSSSPLSA 1170 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcce-eeeeccccCchHH
Confidence 3477899999999999999999999999999999999998776 57799999999999999995 333333333 577
Q ss_pred EEe--CCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCC----CCcEEEEEEccCCCe
Q 001790 479 VWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP----GHWCTTMLYSADGSR 552 (1012)
Q Consensus 479 vwd--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~----~~~v~~~~~s~~~~~ 552 (1012)
+|+ ..+.+.++|.+. .++.|+.. ...-+.|+......+||+++.....++-.. ...-+...|+|+.++
T Consensus 1171 LW~~~s~~~~~Hsf~ed----~~vkFsn~--~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFDED----KAVKFSNS--LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HhccccccCcccccccc----ceeehhhh--HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 999 566666666542 34555433 233445555567889999998877653221 123367889999988
Q ss_pred EEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCc
Q 001790 553 LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL 632 (1012)
Q Consensus 553 l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1012)
++- || .+||++..+.++.|..... ...-.|+|.|..++..++ |||+++.+.+...+.-..
T Consensus 1245 Iln-------dG--vLWDvR~~~aIh~FD~ft~--~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ldq---- 1304 (1516)
T KOG1832|consen 1245 ILN-------DG--VLWDVRIPEAIHRFDQFTD--YGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLDQ---- 1304 (1516)
T ss_pred Eee-------Cc--eeeeeccHHHHhhhhhhee--cccccccCCCceEEeech-----hhhhHHHHHHhcCccccc----
Confidence 874 44 4599999988888876542 233579999999998775 899999988877654332
Q ss_pred ceeEeecCCCEEEE
Q 001790 633 PRLRFSKEGNLLAV 646 (1012)
Q Consensus 633 ~~v~~s~~g~~l~~ 646 (1012)
..+.|+..|..+..
T Consensus 1305 c~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1305 CAVTFNSTGDVMYA 1318 (1516)
T ss_pred eEEEeccCccchhh
Confidence 67888888876654
No 294
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.82 E-value=4.5e-08 Score=98.91 Aligned_cols=163 Identities=17% Similarity=0.150 Sum_probs=111.7
Q ss_pred ceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEE-
Q 001790 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA- 424 (1012)
Q Consensus 346 ~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~- 424 (1012)
.++.+..+|+|+ ++|++..+....++++..... ..+.++. ..+. ..-+++.|-.+......+
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~----~~kl~~~---------~~v~---~~~~ai~~~~~~~sv~v~d 126 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPK----GAKLLDV---------SCVP---KRPTAISFIREDTSVLVAD 126 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCC----cceeeeE---------eecc---cCcceeeeeeccceEEEEe
Confidence 566677788888 788888787777777765432 1111110 1111 122334444444444444
Q ss_pred --ECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeee-cCCccCEEEE
Q 001790 425 --FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-EGHEAPVYSI 500 (1012)
Q Consensus 425 --~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~-~~h~~~v~~~ 500 (1012)
+....+.+|....+.+.. +-||-..+++++|+||++ +++++..|..|++-. ..-..+..| -||..-|..+
T Consensus 127 kagD~~~~di~s~~~~~~~~----~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i 200 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCEP----ILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI 200 (390)
T ss_pred ecCCceeeeeecccccCcch----hhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeee
Confidence 444556677766544333 558999999999999999 899999999999987 444455554 5799999999
Q ss_pred eccccCCceEEEEEecCCeEEEEEcCCCCceeee
Q 001790 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY 534 (1012)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~ 534 (1012)
++.+ +..|+++|.|+++++||+.+++....+
T Consensus 201 sl~~---~~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 201 SLTD---NYLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred eecc---CceeeecCCCCcEEEEecccCCccccc
Confidence 9753 357999999999999999988776443
No 295
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.79 E-value=7.7e-06 Score=91.08 Aligned_cols=188 Identities=13% Similarity=0.102 Sum_probs=112.7
Q ss_pred EEEEEcCCCcEEEEe-CCCcceeeecCCcc-CE-E-----EEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCC
Q 001790 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEA-PV-Y-----SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538 (1012)
Q Consensus 467 ~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~-~v-~-----~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~ 538 (1012)
.++.++.++.+.-+| .+|+.+....-... .. . .+.-.+.-.+..++.++.+|.+..+|.++++..+......
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 466677788888888 78887755432210 00 0 0000011123467788889999999999999988776554
Q ss_pred CcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCc----ceEEEEecCCCEEEEEeCCCcEEEEeC
Q 001790 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS----NGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1012)
Q Consensus 539 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~~~~~dg~i~iwd~ 614 (1012)
....+..+. ++ .++++. .++.+..+|..+|+.+..+....... ...... .+..++.++.+|.+..+|.
T Consensus 151 ~~~ssP~v~-~~-~v~v~~----~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 151 EALSRPVVS-DG-LVLVHT----SNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ceecCCEEE-CC-EEEEEC----CCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEc
Confidence 322222222 33 455554 47889999999999887776431100 011111 2346777888999999999
Q ss_pred CCCeeEEEEecCCCC--C---CcceeEeec--CCCEEEEEECCCcEEEEEccCCc
Q 001790 615 DNVNILTSTDAEGGL--P---NLPRLRFSK--EGNLLAVTTADNGFKILANAIGL 662 (1012)
Q Consensus 615 ~~~~~~~~~~~~~~~--~---~v~~v~~s~--~g~~l~~~~~dg~i~iwd~~~~~ 662 (1012)
.+|+.+......... . ....+..+| .+..+++++.+|.+..+|..++.
T Consensus 223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~ 277 (394)
T PRK11138 223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ 277 (394)
T ss_pred cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC
Confidence 999876655322110 0 011111223 34567777788889888887774
No 296
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.78 E-value=6.3e-06 Score=80.45 Aligned_cols=231 Identities=12% Similarity=0.170 Sum_probs=133.0
Q ss_pred EEEccCCCEEEEEECCCeEEEEeecCC--CcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEeCCCcceee
Q 001790 412 VAWSPDGNYVGVAFTKHLIQLYSYAGS--NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN 489 (1012)
Q Consensus 412 v~~spdg~~las~~~d~~v~vwd~~~~--~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd~~~~~~~~ 489 (1012)
++.++||+.||+- .|..|.|=..+.. ..+.....-+...-.-+-++||||+. +||.+...|+|+++|..|..+..
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~t--lLa~a~S~G~i~vfdl~g~~lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCT--LLAYAESTGTIRVFDLMGSELFV 79 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCc--EEEEEcCCCeEEEEecccceeEE
Confidence 5778899999876 4566766655432 11111111112222356799999999 89999999999999976666655
Q ss_pred ecCC-------ccCEEEEeccccCC----ceEEEEEecCCeEEEEEcCCC-----Cceeeec--C-CCCcEEEEEEccCC
Q 001790 490 FEGH-------EAPVYSICPHHKEN----IQFIFSTAIDGKIKAWLYDTM-----GSRVDYD--A-PGHWCTTMLYSADG 550 (1012)
Q Consensus 490 ~~~h-------~~~v~~~~~~~~~~----~~~l~s~~~dg~i~~wd~~~~-----~~~~~~~--~-~~~~v~~~~~s~~~ 550 (1012)
+..- ...|..+.|..... ...|+.-..+|.++-|-+..+ .....+. . ....|.++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 5432 24566666643221 124666777888887765332 1122222 2 35589999999999
Q ss_pred CeEEEeeecCCCCCc-------EEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEE
Q 001790 551 SRLFSCGTSKDGDSF-------LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST 623 (1012)
Q Consensus 551 ~~l~~~~~~~~~~~~-------i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (1012)
++|++++....+++. +.-|-+-++.+ ......+.+.+.-... .+..+|.+-+.+.....
T Consensus 160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~P-----------yyk~v~~~~~~~~~~~---~~~~~~~~~~~~~fs~~ 225 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSP-----------YYKQVTSSEDDITASS---KRRGLLRIPSFKFFSRQ 225 (282)
T ss_pred CEEEEeccCCCCCccccccccCceEEEEcCCCC-----------cEEEccccCccccccc---cccceeeccceeeeecc
Confidence 999988753322211 22222111111 1100001101100010 11234444333222211
Q ss_pred ecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCC
Q 001790 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1012)
Q Consensus 624 ~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~ 661 (1012)
......|..|..||||..||+...+|.|.+|++.+-
T Consensus 226 --~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 226 --GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred --ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 123447899999999999999999999999999765
No 297
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.75 E-value=6.7e-08 Score=97.69 Aligned_cols=161 Identities=13% Similarity=0.179 Sum_probs=109.5
Q ss_pred CEeEEEEeeCCCEEEEEc-CCcEEEEEcCCCe----EEEEEcCCCCCeeEEEEecCCCcEEEEE---eCCCeEEEEEccC
Q 001790 833 AVPCIALSKNDSYVMSAT-GGKISLFNMMTFK----VMTTFMSPPPASTFLAFHPQDNNIIAIG---TEDSTIHIYNVRV 904 (1012)
Q Consensus 833 ~v~~~~~s~dg~~la~~s-dg~i~lwd~~~~~----~~~~~~~~~~~i~~l~~sp~d~~~las~---~~dg~v~iwd~~~ 904 (1012)
....+..++++++||++. +....+++..... +....... ...+++.|.. +...+..+ ++...+.+|+...
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~-~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~~ 141 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP-KRPTAISFIR-EDTSVLVADKAGDVYSFDILSADS 141 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc-cCcceeeeee-ccceEEEEeecCCceeeeeecccc
Confidence 344566788899999887 4555566654332 33333222 2234444444 22233333 3445666777666
Q ss_pred CeEeEEecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCccccEEEecCCCCCCCCceEEEEcCCCCEEEEE-eC
Q 001790 905 DEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HE 983 (1012)
Q Consensus 905 ~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~-~d 983 (1012)
+.+. .+-||-+.++.|+|+||+++++++..|..|+|-....--.+..+ ..||. .-|..++.-++-. |+++ +|
T Consensus 142 ~~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf----clGH~-eFVS~isl~~~~~-LlS~sGD 214 (390)
T KOG3914|consen 142 GRCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF----CLGHK-EFVSTISLTDNYL-LLSGSGD 214 (390)
T ss_pred cCcc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh----ccccH-hheeeeeeccCce-eeecCCC
Confidence 5444 44589999999999999999999999999999888775544443 34555 7788898876665 5555 89
Q ss_pred CeEEEEECCCceEEEeecC
Q 001790 984 TQLAIYDASKMERIRQVGS 1002 (1012)
Q Consensus 984 ~~i~vwd~~~~~~~~~~~~ 1002 (1012)
+++++||+.+|+.+.++.-
T Consensus 215 ~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 215 KTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred CcEEEEecccCCcccccch
Confidence 9999999999999988743
No 298
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.75 E-value=1e-06 Score=83.92 Aligned_cols=192 Identities=8% Similarity=0.001 Sum_probs=128.8
Q ss_pred EEEEecCCCeEEEEEccCCceecc----------------------------cccccccccccCccccceeccCCCc--c
Q 001790 359 LLLVGSSNGEITLWELAMRDRLVS----------------------------KPFKIWDMAACSLPFQASIFKDVPI--S 408 (1012)
Q Consensus 359 llasg~~dg~v~iwd~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~h~~--~ 408 (1012)
+||.|+..|...+|...+.+.... ++.+++++.......+ -|.. .
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~-----~h~~~~~ 160 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFA-----VHNQNLT 160 (344)
T ss_pred EEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccce-----eeccccc
Confidence 688888899999998875443210 2223333322222211 1322 3
Q ss_pred eEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CC-Ccc
Q 001790 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS-GRK 486 (1012)
Q Consensus 409 V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~-~~~ 486 (1012)
+.++++|+|++++++.+....|..|.+...............+..-.+..|+.... .+|++..||++.||| .. +.+
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccc
Confidence 88899999999999999999999999886443322223344455567888998877 899999999999999 33 333
Q ss_pred eee----ecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCC--------cEEEEEEccCCCeEE
Q 001790 487 LFN----FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--------WCTTMLYSADGSRLF 554 (1012)
Q Consensus 487 ~~~----~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~--------~v~~~~~s~~~~~l~ 554 (1012)
... -..|.+.+..+.|++.+.-++|+..-.-+.+.+.|+++......+..... .+....|+.++..+.
T Consensus 239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~ 318 (344)
T KOG4532|consen 239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESND 318 (344)
T ss_pred hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccc
Confidence 322 23588999999998766556777777778999999998766554332222 356666666666555
Q ss_pred Eee
Q 001790 555 SCG 557 (1012)
Q Consensus 555 ~~~ 557 (1012)
+..
T Consensus 319 v~~ 321 (344)
T KOG4532|consen 319 VKN 321 (344)
T ss_pred ccc
Confidence 544
No 299
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.74 E-value=6.1e-06 Score=80.53 Aligned_cols=260 Identities=13% Similarity=0.160 Sum_probs=135.4
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCC--eeEEEEecC-CCCCCcceeEeecCCCEEEEEECCCcEEEEEccCCceeeec
Q 001790 591 VQFDTTQNHFLAVGEDSQIKFWDMDNV--NILTSTDAE-GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRA 667 (1012)
Q Consensus 591 ~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~-~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~ 667 (1012)
++.+.+|+.|++. .|..|.|-..++. ..+...+.+ .....-..++||||+.+||.+...|+|+++|+... .....
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVI 80 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEc
Confidence 4556777766654 4556666654432 222222222 22234578999999999999999999999998753 23222
Q ss_pred ccCCccc-cccCccceeeeccccccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEE
Q 001790 668 VENPPFE-ALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEI 746 (1012)
Q Consensus 668 ~~~~~~~-~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~ 746 (1012)
....... .....|..+.|..... ...-...+++-..+|.++-|-+..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~-------------------------------s~~ws~ELlvi~Y~G~L~Sy~vs~g 129 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKK-------------------------------SAQWSYELLVINYRGQLRSYLVSVG 129 (282)
T ss_pred CcccccCCccccceeeeEeecccc-------------------------------ccccceeEEEEeccceeeeEEEEcc
Confidence 1111110 1112223333322110 0000112233334455555554332
Q ss_pred eec--CceEEEecCCCCCCCCceEEEEEecCcceEEEeeccCeeEeeeccccccCCCCC-ccccccceeeccCCCceeee
Q 001790 747 VDS--GQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGK-ATASAVPQHWLPSSGLLMAN 823 (1012)
Q Consensus 747 ~~~--~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~ 823 (1012)
... .....+.+. ......|.++.++|.-+.|+++|....= ++. .....-+..|.+-++.+...
T Consensus 130 t~q~y~e~hsfsf~--~~yp~Gi~~~vy~p~h~LLlVgG~~~~~------------~~~s~a~~~GLtaWRiL~~~Pyyk 195 (282)
T PF15492_consen 130 TNQGYQENHSFSFS--SHYPHGINSAVYHPKHRLLLVGGCEQNQ------------DGMSKASSCGLTAWRILSDSPYYK 195 (282)
T ss_pred cCCcceeeEEEEec--ccCCCceeEEEEcCCCCEEEEeccCCCC------------CccccccccCceEEEEcCCCCcEE
Confidence 211 222222222 2246789999999999888887764210 000 01112234444444332221
Q ss_pred cccCCCCCCCEeEEEEeeCCCEEEEEcCCcEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEcc
Q 001790 824 DVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR 903 (1012)
Q Consensus 824 ~~~~~~~~~~v~~~~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~ 903 (1012)
... +.+...-+.. .+..+|.+.+.+...........|..|..|| ||.+||+...+|.|.+|++.
T Consensus 196 ~v~-------------~~~~~~~~~~--~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP-dg~~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 196 QVT-------------SSEDDITASS--KRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP-DGSLLACIHFSGSLSLWEIP 259 (282)
T ss_pred Ecc-------------ccCccccccc--cccceeeccceeeeeccccCCCceEEEEECC-CCCEEEEEEcCCeEEEEecC
Confidence 111 1111111110 1123444443333322233456799999999 99999999999999999999
Q ss_pred CCeEeEEecc
Q 001790 904 VDEVKSKLKG 913 (1012)
Q Consensus 904 ~~~~~~~~~~ 913 (1012)
+-++...+..
T Consensus 260 sL~~~~~W~~ 269 (282)
T PF15492_consen 260 SLRLQRSWKQ 269 (282)
T ss_pred cchhhcccch
Confidence 8877766653
No 300
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.74 E-value=2.4e-07 Score=89.79 Aligned_cols=211 Identities=14% Similarity=0.179 Sum_probs=140.4
Q ss_pred cccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCc-----ceeeecCCc------------cCEEEEeccccCCceEE
Q 001790 450 HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR-----KLFNFEGHE------------APVYSICPHHKENIQFI 511 (1012)
Q Consensus 450 h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~-----~~~~~~~h~------------~~v~~~~~~~~~~~~~l 511 (1012)
....|+++.|...|. ++++|...|.|.++. .... ....|++|. ..|..+.|....+...+
T Consensus 25 ead~ItaVefd~tg~--YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF 102 (460)
T COG5170 25 EADKITAVEFDETGL--YLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF 102 (460)
T ss_pred ccceeeEEEeccccc--eEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence 345689999999998 899999999999998 3221 223455554 34666666655555567
Q ss_pred EEEecCCeEEEEEcCCCCc-------------------ee------------------------eecCCCCcEEEEEEcc
Q 001790 512 FSTAIDGKIKAWLYDTMGS-------------------RV------------------------DYDAPGHWCTTMLYSA 548 (1012)
Q Consensus 512 ~s~~~dg~i~~wd~~~~~~-------------------~~------------------------~~~~~~~~v~~~~~s~ 548 (1012)
+..+.|.+|++|.+..... .. .-..|.-.+.++.|..
T Consensus 103 LlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns 182 (460)
T COG5170 103 LLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS 182 (460)
T ss_pred EEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC
Confidence 7778899999998743200 00 0122344678899999
Q ss_pred CCCeEEEeeecCCCCCcEEEEeCCCCee---eeeecCCCC----CcceEEEEecCC-CEEEEEeCCCcEEEEeCCCCee-
Q 001790 549 DGSRLFSCGTSKDGDSFLVEWNESEGTI---KRTYAGFRK----KSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNI- 619 (1012)
Q Consensus 549 ~~~~l~~~~~~~~~~~~i~lwd~~~~~~---~~~~~~~~~----~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~- 619 (1012)
|...++++- +-.|.+|++.-... +..+..|.- ..|++..|+|.. +.+...+..|.|++-|++...+
T Consensus 183 D~et~lSaD-----dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alc 257 (460)
T COG5170 183 DKETLLSAD-----DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALC 257 (460)
T ss_pred chheeeecc-----ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhc
Confidence 999998874 88899998764321 122222211 247788899865 5666678899999999974321
Q ss_pred -----EEEEecC--------CCCCCcceeEeecCCCEEEEEECCCcEEEEEccCCceeeecc
Q 001790 620 -----LTSTDAE--------GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAV 668 (1012)
Q Consensus 620 -----~~~~~~~--------~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~ 668 (1012)
+...... +-...|..+.|+++|+++++-+. -++++||....+.+..+.
T Consensus 258 dn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi 318 (460)
T COG5170 258 DNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTI 318 (460)
T ss_pred cCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceee
Confidence 1111111 11236789999999999988655 589999998766555544
No 301
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.73 E-value=3.2e-07 Score=88.96 Aligned_cols=247 Identities=15% Similarity=0.224 Sum_probs=161.7
Q ss_pred CCcceEEEEEccCCCEEEEEECCCeEEEEeecCCC--cceeeeeeecccc------------CeEEEEEeCCCCceEEEE
Q 001790 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN--DLRQHSQIDAHVG------------AVNDLAFAYPNKLLCVVT 470 (1012)
Q Consensus 405 h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~--~~~~~~~l~~h~~------------~v~~l~~s~~~~~~~l~s 470 (1012)
....|+++.|...|.||++|...|.|.++.-.... ..+-+..+++|.. .|..+.|..++..-.++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 35679999999999999999999999999765432 1112223555643 578888887765546777
Q ss_pred EcCCCcEEEEe--CC------------------Ccce-----------------------eee-cCCccCEEEEeccccC
Q 001790 471 CGDDKLIKVWE--LS------------------GRKL-----------------------FNF-EGHEAPVYSICPHHKE 506 (1012)
Q Consensus 471 ~~~d~~v~vwd--~~------------------~~~~-----------------------~~~-~~h~~~v~~~~~~~~~ 506 (1012)
.+.|++|++|. .. +.++ +.+ ..|.-.|.+++++.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-- 182 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-- 182 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC--
Confidence 78899999998 22 1110 001 34566677777754
Q ss_pred CceEEEEEecCCeEEEEEcCCCCceee---ecCCCC-----cEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeee-
Q 001790 507 NIQFIFSTAIDGKIKAWLYDTMGSRVD---YDAPGH-----WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK- 577 (1012)
Q Consensus 507 ~~~~l~s~~~dg~i~~wd~~~~~~~~~---~~~~~~-----~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~- 577 (1012)
|...+++ ..|-.|.+|+++....... +..+.- -|++..|+|....++.-++ ..|.|++-|++...+.
T Consensus 183 D~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs---SkG~Ikl~DlRq~alcd 258 (460)
T COG5170 183 DKETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS---SKGEIKLNDLRQSALCD 258 (460)
T ss_pred chheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec---CCCcEEehhhhhhhhcc
Confidence 4455555 4578899999876554432 333322 5788889997654443332 3889999998843211
Q ss_pred ---eee------------cCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCC-eeEEEEecCCC----------CCC
Q 001790 578 ---RTY------------AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV-NILTSTDAEGG----------LPN 631 (1012)
Q Consensus 578 ---~~~------------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~----------~~~ 631 (1012)
..+ .+.. ..|..+.|+++|+++++-..- +|++||.+.. .++.++..+.. ...
T Consensus 259 n~~klfe~~~D~v~~~ff~eiv-sSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDa 336 (460)
T COG5170 259 NSKKLFELTIDGVDVDFFEEIV-SSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDA 336 (460)
T ss_pred CchhhhhhccCcccchhHHHHh-hhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHHHHHHHHHhhhhccc
Confidence 111 1111 246778999999998887654 8999998753 45666644321 111
Q ss_pred c---ceeEeecCCCEEEEEECCCcEEEEEcc
Q 001790 632 L---PRLRFSKEGNLLAVTTADNGFKILANA 659 (1012)
Q Consensus 632 v---~~v~~s~~g~~l~~~~~dg~i~iwd~~ 659 (1012)
| ..+.||.|...+.+|+..+..-++-..
T Consensus 337 ifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 337 IFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred eeeeEEEEecCCcccccccccccceeeeccc
Confidence 2 357888999999999998888887643
No 302
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.70 E-value=9e-05 Score=70.82 Aligned_cols=136 Identities=9% Similarity=-0.050 Sum_probs=93.4
Q ss_pred eEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcc
Q 001790 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSN 588 (1012)
Q Consensus 509 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v 588 (1012)
.+++.|+..+.+..-|..+++..+...... .+.+-+.- -|++++.|+. .+.+++.+..+|.....+..... .-
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~-RiE~sa~v-vgdfVV~GCy----~g~lYfl~~~tGs~~w~f~~~~~-vk 96 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGV-RIECSAIV-VGDFVVLGCY----SGGLYFLCVKTGSQIWNFVILET-VK 96 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCc-eeeeeeEE-ECCEEEEEEc----cCcEEEEEecchhheeeeeehhh-hc
Confidence 577788888888888888877766544332 23222222 5677888885 88899999999988877775543 22
Q ss_pred eEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcE
Q 001790 589 GVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (1012)
Q Consensus 589 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i 653 (1012)
......+++..+..|+.|+..+..|..+...+...+..+. ...+-+..|-...|..+...|.+
T Consensus 97 ~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~--~f~sP~i~~g~~sly~a~t~G~v 159 (354)
T KOG4649|consen 97 VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG--TFVSPVIAPGDGSLYAAITAGAV 159 (354)
T ss_pred cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCc--eeccceecCCCceEEEEeccceE
Confidence 2355678899999999999999999999999988776654 23344455522334444444444
No 303
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.68 E-value=5.1e-07 Score=85.62 Aligned_cols=206 Identities=15% Similarity=0.244 Sum_probs=127.3
Q ss_pred ceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEE
Q 001790 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1012)
Q Consensus 346 ~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~ 425 (1012)
.|+.+.|+-+- .|+++..++.+......++.++. .|+-.....++ ..+..|.++-.+-+.+--+..++++.
T Consensus 38 ~~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~-----~~~rt~~i~~~--~~~a~~sep~p~~~~s~~~t~V~~~~ 108 (319)
T KOG4714|consen 38 KLSKVSLSAEY--ILFTGETSSQIISLGKGRGRCIS-----LWERDDGIDPF--KVLAKNSEIDPNDACTMTDNRVCIGY 108 (319)
T ss_pred EEEEeechhhh--eeecccchhheeeeccceEEEec-----hhhcccCcCce--eeeeccCCCCCcccccccCCceEecC
Confidence 37777777654 57888888888877765554432 12222222222 23445655555555666788899999
Q ss_pred CCCeEEEEeecCCCcceeeeeee-ccccCeEEEEEeCCCCceEEEEEcCCCc------EEEEeCCCcceeee---cCCcc
Q 001790 426 TKHLIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCGDDKL------IKVWELSGRKLFNF---EGHEA 495 (1012)
Q Consensus 426 ~d~~v~vwd~~~~~~~~~~~~l~-~h~~~v~~l~~s~~~~~~~l~s~~~d~~------v~vwd~~~~~~~~~---~~h~~ 495 (1012)
.||.+.+.+.+.- .+...... .|.+ -.+.+....+. .+.++ .-|. .+.|+. +++.++ ..-..
T Consensus 109 ~dg~~~v~s~~~~--~~~~~~i~~~~~~-~as~~~~~~~~--~i~s~-~~g~~n~~d~~~a~~~--~p~~t~~~~~~~~~ 180 (319)
T KOG4714|consen 109 ADGSLAVFSTDKD--LALMSRIPSIHSG-SASRKICRHGN--SILSG-GCGNWNAQDNFYANTL--DPIKTLIPSKKALD 180 (319)
T ss_pred CCceEEEEechHH--Hhhhhhccccccc-ccccceeeccc--EEecC-CcceEeeccceeeecc--cccccccccccccc
Confidence 9999999987752 21111111 1222 12223333444 33333 2333 344541 111111 11223
Q ss_pred CEEEEeccccCCceEEEEEecCCeEEEEEcCCCCcee-eecCCCCcEEEEEEcc-CCCeEEEeeecCCCCCcEEEEeCCC
Q 001790 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESE 573 (1012)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~lwd~~~ 573 (1012)
.|.+++-+|... .++++|+.||.+-+||++...... .+..|..++..+-|+| ++..|++++ +||.+..||..+
T Consensus 181 ~v~~l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s----edGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCS----EDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEec----CCCcEEEEcCCC
Confidence 488888888754 688899999999999998864443 4677888999999998 567888888 699999999654
No 304
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.67 E-value=3.5e-06 Score=80.45 Aligned_cols=231 Identities=10% Similarity=-0.022 Sum_probs=151.6
Q ss_pred CCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEeCCCcceeeecCCccC
Q 001790 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAP 496 (1012)
Q Consensus 417 dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~h~~~ 496 (1012)
...+||.|+.-|...+|...+.+.... ....|...|+-+.=.-|.+. -+..++.|.++++.+.++...+.. .|...
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~--~cd~snn~v~~~~r~cd~~~-~~~i~sndht~k~~~~~~~s~~~~-~h~~~ 158 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLY--QCDVSNNDVTLVKRYCDLKF-PLNIASNDHTGKTMVVSGDSNKFA-VHNQN 158 (344)
T ss_pred cccEEEeccccceeeeecccCccccee--eecccccchhhhhhhccccc-ceeeccCCcceeEEEEecCcccce-eeccc
Confidence 456899999999999999987553321 23334443433222223332 466678899999998554443222 23332
Q ss_pred --EEEEeccccCCceEEEEEecCCeEEEEEcCCCCceee---ecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeC
Q 001790 497 --VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD---YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1012)
Q Consensus 497 --v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~ 571 (1012)
+.++++ ++++.+.++.+....|..|.++....... .......-.+..|+.....++++. +||++.+||+
T Consensus 159 ~~~ns~~~--snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~----Qdg~~~I~DV 232 (344)
T KOG4532|consen 159 LTQNSLHY--SNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVF----QDGTCAIYDV 232 (344)
T ss_pred cceeeeEE--cCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEe----cCCcEEEEEe
Confidence 566666 44778999999999999999887655432 233344556788999998999988 6999999999
Q ss_pred CCCeee----eeecCCCCCcceEEEEecCC--CEEEEEeCCCcEEEEeCCCCeeEEEEecCCCC------CCcceeEeec
Q 001790 572 SEGTIK----RTYAGFRKKSNGVVQFDTTQ--NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL------PNLPRLRFSK 639 (1012)
Q Consensus 572 ~~~~~~----~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------~~v~~v~~s~ 639 (1012)
+..... ..-+.++.+.+..+.|++.| ..|+..-.-+.+.+.|++++...+.+...... ..+....|+.
T Consensus 233 R~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~ 312 (344)
T KOG4532|consen 233 RNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNN 312 (344)
T ss_pred cccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccC
Confidence 875433 22334556689999999866 34555556678999999998876666443321 2366677777
Q ss_pred CCCEEEEEECCCcEEEEEc
Q 001790 640 EGNLLAVTTADNGFKILAN 658 (1012)
Q Consensus 640 ~g~~l~~~~~dg~i~iwd~ 658 (1012)
++..+.+.+.+ .+.-|+.
T Consensus 313 ~n~s~~v~~e~-~~ae~ni 330 (344)
T KOG4532|consen 313 ENESNDVKNEL-QGAEYNI 330 (344)
T ss_pred CCcccccccch-hhheeec
Confidence 77666665554 3333444
No 305
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.67 E-value=2.5e-05 Score=80.75 Aligned_cols=208 Identities=15% Similarity=0.126 Sum_probs=132.7
Q ss_pred EEEEec-CcceEEEeeccCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEe-eCCCEE
Q 001790 769 RLLYTN-SAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS-KNDSYV 846 (1012)
Q Consensus 769 ~l~~s~-~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~dg~~l 846 (1012)
+.+|.+ ++..+++-...+.|..|+... +...... ... ...+++. ++|+++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~----------------------~~~~~~~-----~~~-~~G~~~~~~~g~l~ 55 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDT----------------------GEVEVID-----LPG-PNGMAFDRPDGRLY 55 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTT----------------------TEEEEEE-----SSS-EEEEEEECTTSEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCC----------------------CeEEEEe-----cCC-CceEEEEccCCEEE
Confidence 567787 566566555677777776433 2221111 112 6677777 565554
Q ss_pred EEEcCCcEEEEEcCCCeEEEEEcC-----CCCCeeEEEEecCCCcEEEEEeCC--------CeEEEEEccCCeEeEEecc
Q 001790 847 MSATGGKISLFNMMTFKVMTTFMS-----PPPASTFLAFHPQDNNIIAIGTED--------STIHIYNVRVDEVKSKLKG 913 (1012)
Q Consensus 847 a~~sdg~i~lwd~~~~~~~~~~~~-----~~~~i~~l~~sp~d~~~las~~~d--------g~v~iwd~~~~~~~~~~~~ 913 (1012)
++..+.+.++|..+++....... .....+.+++.| +|++.++.... |.|..++.. ++......
T Consensus 56 -v~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~- 131 (246)
T PF08450_consen 56 -VADSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD- 131 (246)
T ss_dssp -EEETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-
T ss_pred -EEEcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEec-
Confidence 44545566669998866544432 334688999999 88877776544 557777766 55443333
Q ss_pred cCCCeEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCCc-cc-cE-EEecCCCCCCCCceEEEEcCCCCEEEEE-eCCeEEE
Q 001790 914 HQKRITGLAFSTSLNILV-SSGADAQLCVWSIDTWEK-RK-SV-TIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAI 988 (1012)
Q Consensus 914 h~~~V~~l~~spdg~~l~-s~s~Dg~i~vwd~~~~~~-~~-~~-~~~~~~~~~~~~v~~l~fs~d~~~l~~~-~d~~i~v 988 (1012)
.-...+.++|+||++.|+ +-+..+.|..++++.... +. .. ........ +....+++..+|++.++. ..+.|.+
T Consensus 132 ~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--g~pDG~~vD~~G~l~va~~~~~~I~~ 209 (246)
T PF08450_consen 132 GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP--GYPDGLAVDSDGNLWVADWGGGRIVV 209 (246)
T ss_dssp EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS--CEEEEEEEBTTS-EEEEEETTTEEEE
T ss_pred CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC--cCCCcceEcCCCCEEEEEcCCCEEEE
Confidence 345678999999998765 566778899999864332 11 11 12222221 346789999999987776 6889999
Q ss_pred EECCCceEEEeecC--CCeeEEEec
Q 001790 989 YDASKMERIRQVGS--PHICSIIFC 1011 (1012)
Q Consensus 989 wd~~~~~~~~~~~~--~~i~~~~f~ 1011 (1012)
+|.+ |+.+..+.. ..+.+++|.
T Consensus 210 ~~p~-G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 210 FDPD-GKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp EETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred ECCC-ccEEEEEcCCCCCEEEEEEE
Confidence 9976 888887754 689999983
No 306
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=7.8e-07 Score=90.96 Aligned_cols=256 Identities=14% Similarity=0.116 Sum_probs=169.1
Q ss_pred cCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE
Q 001790 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1012)
Q Consensus 342 ~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 421 (1012)
-|.+.|+-+.-+-. + ++.+++.||.++.|.-..-..+. + ...+..|-+.|.+++.|-||.++
T Consensus 7 mhrd~i~hv~~tka-~-fiiqASlDGh~KFWkKs~isGvE---f-------------VKhFraHL~~I~sl~~S~dg~L~ 68 (558)
T KOG0882|consen 7 MHRDVITHVFPTKA-K-FIIQASLDGHKKFWKKSRISGVE---F-------------VKHFRAHLGVILSLAVSYDGWLF 68 (558)
T ss_pred cccceeeeEeeehh-h-eEEeeecchhhhhcCCCCcccee---e-------------hhhhHHHHHHHHhhhccccceeE
Confidence 37777887776644 3 79999999999999753211110 0 01256688999999999999999
Q ss_pred EEEEC-CCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCC-CCceEEEEEcCCCcEEEEe--CCCcce-eeecCCccC
Q 001790 422 GVAFT-KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP-NKLLCVVTCGDDKLIKVWE--LSGRKL-FNFEGHEAP 496 (1012)
Q Consensus 422 as~~~-d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~-~~~~~l~s~~~d~~v~vwd--~~~~~~-~~~~~h~~~ 496 (1012)
+|++. |..++++|+++-..+..+. +.--.+.+.. ..++. -..++-++.-.++.+.++| .++.+. ..-.-|..+
T Consensus 69 ~Sv~d~Dhs~KvfDvEn~DminmiK-L~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sP 146 (558)
T KOG0882|consen 69 RSVEDPDHSVKVFDVENFDMINMIK-LVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSP 146 (558)
T ss_pred eeccCcccceeEEEeeccchhhhcc-cccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCc
Confidence 99777 9999999998755442211 2222222222 12221 1111344555678999999 344333 333459999
Q ss_pred EEEEeccccCCceEEEEEecCCeEEEEEcCC------CCceeee---------cCCCCcEEEEEEccCCCeEEEeeecCC
Q 001790 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDT------MGSRVDY---------DAPGHWCTTMLYSADGSRLFSCGTSKD 561 (1012)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~------~~~~~~~---------~~~~~~v~~~~~s~~~~~l~~~~~~~~ 561 (1012)
|..+.+.+.. +.+++....|.|.-|..+. .+....+ ........++.|+|+|..+...+
T Consensus 147 V~~i~y~qa~--Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~---- 220 (558)
T KOG0882|consen 147 VKKIRYNQAG--DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN---- 220 (558)
T ss_pred eEEEEeeccc--cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC----
Confidence 9999987754 5788888899999998762 1111111 11233568999999999999887
Q ss_pred CCCcEEEEeCCCCeeeeeecCC--------------------------------CCCcceEEEEecCCCEEEEEeCCCcE
Q 001790 562 GDSFLVEWNESEGTIKRTYAGF--------------------------------RKKSNGVVQFDTTQNHFLAVGEDSQI 609 (1012)
Q Consensus 562 ~~~~i~lwd~~~~~~~~~~~~~--------------------------------~~~~v~~~~~s~~~~~l~~~~~dg~i 609 (1012)
.|..|++++.++|+.++.+... .......+.|...+++|+.|+.=| |
T Consensus 221 ~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-i 299 (558)
T KOG0882|consen 221 PDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-I 299 (558)
T ss_pred cccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-E
Confidence 5899999999998877655421 111223456777777777776553 6
Q ss_pred EEEeCCCCeeEEEEe
Q 001790 610 KFWDMDNVNILTSTD 624 (1012)
Q Consensus 610 ~iwd~~~~~~~~~~~ 624 (1012)
++.++.++.+.+.+.
T Consensus 300 kvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 300 KVINLDTNTVVRILG 314 (558)
T ss_pred EEEEeecCeEEEEec
Confidence 777777777766653
No 307
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.63 E-value=1.6e-07 Score=101.38 Aligned_cols=222 Identities=15% Similarity=0.228 Sum_probs=147.9
Q ss_pred cccCCCCCccce-Eeec-CCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccC
Q 001790 327 TWSLDDLPRTVA-VSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1012)
Q Consensus 327 ~~~~~~~~~~~~-~~~~-h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1012)
+|.+.......+ ..++ |+..|+.+-|+|..+.++|+++.|..|..||+++... ++..| ..
T Consensus 95 iwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~----p~ys~--------------~~ 156 (1081)
T KOG0309|consen 95 IWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR----PFYST--------------SS 156 (1081)
T ss_pred hhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc----ceeee--------------ec
Confidence 787765444433 3344 9999999999999998999999999999999987543 22222 22
Q ss_pred CCcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CC
Q 001790 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (1012)
Q Consensus 405 h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~ 483 (1012)
-...-+.|+|+-....+.+.+..+.|.+||...|..... .+++|...|+.++|..--.. .+.+++.|++|+.|| .+
T Consensus 157 w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~--s~K~~vs~vn~~~fnr~~~s-~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 157 WRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLC--SLKGHVSSVNSIDFNRFKYS-EIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred ccccCceeeecccCcchhhhccCCceEEEeccCCCcceE--EecccceeeehHHHhhhhhh-hhcccCCCCceeeecccc
Confidence 334567789998444444555667799999998765543 67889999999999764333 588999999999999 32
Q ss_pred C-cceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCC----------CCceeeecCCCCcEEEEEEccCCC-
Q 001790 484 G-RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT----------MGSRVDYDAPGHWCTTMLYSADGS- 551 (1012)
Q Consensus 484 ~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~----------~~~~~~~~~~~~~v~~~~~s~~~~- 551 (1012)
. +.-........+|+--++.|-++|.++.-.-.+..+.+++.+. ...+..+.+|...|....|-..+.
T Consensus 234 St~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~ 313 (1081)
T KOG0309|consen 234 STTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKEC 313 (1081)
T ss_pred cccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccc
Confidence 2 2222222344566666666666665544333333555444332 234556778877666555543222
Q ss_pred ---------eEEEeeecCCCCCcEEEEeCCC
Q 001790 552 ---------RLFSCGTSKDGDSFLVEWNESE 573 (1012)
Q Consensus 552 ---------~l~~~~~~~~~~~~i~lwd~~~ 573 (1012)
.|++-+ .|..+++|-+.+
T Consensus 314 ~~d~d~rdfQLVTWS----kD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 314 DGDYDSRDFQLVTWS----KDQTLRLWPIDS 340 (1081)
T ss_pred cCCCCccceeEEEee----cCCceEeeeccH
Confidence 567766 588999997753
No 308
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=4.3e-06 Score=84.60 Aligned_cols=248 Identities=12% Similarity=0.119 Sum_probs=147.0
Q ss_pred eccCCCcceEEEEEccCCC-EEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEE
Q 001790 401 IFKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1012)
Q Consensus 401 ~~~~h~~~V~~v~~spdg~-~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~v 479 (1012)
++.+|...|..++|||..+ ++..++.+..|+|.|+++...+. .+..| ..+++++|.-|..+ +++.|-..|.|.+
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 5788999999999999777 78889999999999999976555 35556 78999999998876 8999999999999
Q ss_pred Ee--CCCcceeeecC--CccCEEEEecccc----CCceEEEEEecCCeEEEEEcCCCCcee--eec-CCCCcEEEEEEcc
Q 001790 480 WE--LSGRKLFNFEG--HEAPVYSICPHHK----ENIQFIFSTAIDGKIKAWLYDTMGSRV--DYD-APGHWCTTMLYSA 548 (1012)
Q Consensus 480 wd--~~~~~~~~~~~--h~~~v~~~~~~~~----~~~~~l~s~~~dg~i~~wd~~~~~~~~--~~~-~~~~~v~~~~~s~ 548 (1012)
|| .....+..+.+ ...+|..++.-+. .-|.+++....+ +..|.+....... ... ...+.+.++...+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99 33444444433 2334554432211 012344333333 3446543322221 122 2244566677777
Q ss_pred CCCeEEEeeecCCCCCcEEE----EeCCCCeeeeeec-CCCCC---c---ceEEEEecCCCEEEE-EeCCCcEEEEeCCC
Q 001790 549 DGSRLFSCGTSKDGDSFLVE----WNESEGTIKRTYA-GFRKK---S---NGVVQFDTTQNHFLA-VGEDSQIKFWDMDN 616 (1012)
Q Consensus 549 ~~~~l~~~~~~~~~~~~i~l----wd~~~~~~~~~~~-~~~~~---~---v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~ 616 (1012)
..+.++.......+-.+++. -|-.+|..+..-+ ++.+. . -..+.-.++.++++. +...+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 66666655432111111111 1222232221111 11010 0 111222445566555 44678899999999
Q ss_pred CeeEEEEecCCCCCCcceeEeec-C-CCEEEEEECCCcEEEEEcc
Q 001790 617 VNILTSTDAEGGLPNLPRLRFSK-E-GNLLAVTTADNGFKILANA 659 (1012)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~v~~s~-~-g~~l~~~~~dg~i~iwd~~ 659 (1012)
.+.++.+.... +|.++.... + +.+|++-+ |..++||..+
T Consensus 421 ~evvQ~l~~~e---pv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALSE---PVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred hheeeecccCc---ceeecceeecCCcchhhhee-cceEEEEecC
Confidence 99999998753 677766554 3 34566555 4577887653
No 309
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.62 E-value=2.2e-05 Score=81.07 Aligned_cols=218 Identities=17% Similarity=0.163 Sum_probs=138.7
Q ss_pred EEEEcc-CCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEe-CCCCceEEEEEcCCCcEEEEe-CCCcce
Q 001790 411 RVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFA-YPNKLLCVVTCGDDKLIKVWE-LSGRKL 487 (1012)
Q Consensus 411 ~v~~sp-dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s-~~~~~~~l~s~~~d~~v~vwd-~~~~~~ 487 (1012)
+++|.+ ++.++++--..+.|..|+..+++... +.. .. ...+++. +++. ++.+..+ .+.++| .+++..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~----~~~-~~-~~G~~~~~~~g~---l~v~~~~-~~~~~d~~~g~~~ 73 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV----IDL-PG-PNGMAFDRPDGR---LYVADSG-GIAVVDPDTGKVT 73 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE----EES-SS-EEEEEEECTTSE---EEEEETT-CEEEEETTTTEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE----Eec-CC-CceEEEEccCCE---EEEEEcC-ceEEEecCCCcEE
Confidence 578888 77777777778999999998865322 221 12 6777887 6655 4444444 455669 666443
Q ss_pred eeecC-----CccCEEEEeccccCCceEEEEEecC--------CeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEE
Q 001790 488 FNFEG-----HEAPVYSICPHHKENIQFIFSTAID--------GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (1012)
Q Consensus 488 ~~~~~-----h~~~v~~~~~~~~~~~~~l~s~~~d--------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 554 (1012)
..... .....+.+++.+ +|.+.++.... |.|..++.+ .........-...+.++|+|+++.|+
T Consensus 74 ~~~~~~~~~~~~~~~ND~~vd~--~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAVDP--DGNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTVVADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE-T--TS-EEEEEECCBCTTCGGSEEEEEEETT--SEEEEEEEEESSEEEEEEETTSSEEE
T ss_pred EEeeccCCCcccCCCceEEEcC--CCCEEEEecCCCccccccccceEEECCC--CeEEEEecCcccccceEECCcchhee
Confidence 22221 345677888855 56666665433 456666655 23333333345678999999999888
Q ss_pred EeeecCCCCCcEEEEeCCCCee----eeeecCCCC--CcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCC
Q 001790 555 SCGTSKDGDSFLVEWNESEGTI----KRTYAGFRK--KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG 628 (1012)
Q Consensus 555 ~~~~~~~~~~~i~lwd~~~~~~----~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 628 (1012)
++.. ..+.|..+++..... .+.+..... .....+++..+|+..++....+.|.+++.. |+.+..+.....
T Consensus 150 v~ds---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~ 225 (246)
T PF08450_consen 150 VADS---FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVP 225 (246)
T ss_dssp EEET---TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSS
T ss_pred eccc---ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCC
Confidence 6654 577788888853221 122221111 136679999999888887789999999987 888888887633
Q ss_pred CCCcceeEee-cCCCEEEEEE
Q 001790 629 LPNLPRLRFS-KEGNLLAVTT 648 (1012)
Q Consensus 629 ~~~v~~v~~s-~~g~~l~~~~ 648 (1012)
.+++++|. ++.+.|++.+
T Consensus 226 --~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 226 --RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp --SEEEEEEESTTSSEEEEEE
T ss_pred --CEEEEEEECCCCCEEEEEe
Confidence 68999994 6766666554
No 310
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.61 E-value=4.5e-05 Score=78.64 Aligned_cols=96 Identities=17% Similarity=0.130 Sum_probs=67.5
Q ss_pred CCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCC
Q 001790 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN 642 (1012)
Q Consensus 563 ~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~ 642 (1012)
++.|..||..+|+.+..........-......++++.+++++.++.|+.||..+|+.+........ +.... ...+.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~---~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP---ISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC---GGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc---cccee-eeccc
Confidence 678999999999998887642211111111344677888889999999999999999988887432 22222 33555
Q ss_pred EEEEEECCCcEEEEEccCCc
Q 001790 643 LLAVTTADNGFKILANAIGL 662 (1012)
Q Consensus 643 ~l~~~~~dg~i~iwd~~~~~ 662 (1012)
.+++++.++.++.+|..++.
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~ 97 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGK 97 (238)
T ss_dssp EEEEEETTSEEEEEETTTSC
T ss_pred ccccccceeeeEecccCCcc
Confidence 67777788888888877763
No 311
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.57 E-value=0.00058 Score=79.68 Aligned_cols=247 Identities=10% Similarity=0.055 Sum_probs=146.9
Q ss_pred CcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEeCCCc
Q 001790 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (1012)
Q Consensus 406 ~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd~~~~ 485 (1012)
++.|.++.|-.++.-++.+..+|.|.+-|.++..... ...-...|.+++||||++ .++..+.++++.+-+.+-.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei----vg~vd~GI~aaswS~Dee--~l~liT~~~tll~mT~~f~ 141 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI----VGNVDNGISAASWSPDEE--LLALITGRQTLLFMTKDFE 141 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceee----eeeccCceEEEeecCCCc--EEEEEeCCcEEEEEecccc
Confidence 4689999999999999999999999999888754322 334567899999999999 5666666677776553333
Q ss_pred ceeeecCC-----ccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecC
Q 001790 486 KLFNFEGH-----EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1012)
Q Consensus 486 ~~~~~~~h-----~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1012)
++..-.-+ .+....+-|-... .=+.|+ .|.....+..............+.-+++.|--||+++++.....
T Consensus 142 ~i~E~~L~~d~~~~sk~v~VGwGrke---Tqfrgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~ 217 (1265)
T KOG1920|consen 142 PIAEKPLDADDERKSKFVNVGWGRKE---TQFRGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVES 217 (1265)
T ss_pred chhccccccccccccccceecccccc---eeeecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEec
Confidence 33211111 1112222221111 011111 11111111100000000001122345789999999999855433
Q ss_pred CCC-CcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEe---CCCcEEEEeCCCCeeE-EEEecCCCCCCccee
Q 001790 561 DGD-SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG---EDSQIKFWDMDNVNIL-TSTDAEGGLPNLPRL 635 (1012)
Q Consensus 561 ~~~-~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~v 635 (1012)
..+ ..|++||.+ |.+-.+-... ...-.+++|-|.|..+++.. .|+.|.++..+.-+.- ..+..+.....|..+
T Consensus 218 ~~~~RkirV~drE-g~Lns~se~~-~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L 295 (1265)
T KOG1920|consen 218 ETGTRKIRVYDRE-GALNSTSEPV-EGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEEL 295 (1265)
T ss_pred cCCceeEEEeccc-chhhcccCcc-cccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchhee
Confidence 234 789999976 4443332222 22456799999999998864 5678999986542211 112222223358999
Q ss_pred EeecCCCEEEE---EECCCcEEEEEccCCcee
Q 001790 636 RFSKEGNLLAV---TTADNGFKILANAIGLRS 664 (1012)
Q Consensus 636 ~~s~~g~~l~~---~~~dg~i~iwd~~~~~~~ 664 (1012)
+|+.++..||+ ......|++|-+.+-...
T Consensus 296 ~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWY 327 (1265)
T KOG1920|consen 296 AWNSNSDILAVVTSNLENSLVQLWTTGNYHWY 327 (1265)
T ss_pred eecCCCCceeeeecccccceEEEEEecCeEEE
Confidence 99999999998 444556999998876433
No 312
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=8.7e-07 Score=88.78 Aligned_cols=172 Identities=12% Similarity=0.177 Sum_probs=121.2
Q ss_pred hHHHHHHHHHHHhhcCHHHHHHHHHHhcCCC--------CCHHHHHHHhhccCHHHHHHHHcCCCCCCCcccchhHHHHH
Q 001790 5 SRELVFLILQFLEEEKFKESVHKLEKESGFF--------FNMKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEI 76 (1012)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~--------~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i 76 (1012)
+.-+.|+|..||..+||.+||..|-++|.+. .++..++++++.|+...|+.-.+.-...-. .....+-|.+
T Consensus 115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk-K~~S~lEf~l 193 (389)
T KOG0396|consen 115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK-KEESSLEFQL 193 (389)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH-hccchhhhHH
Confidence 4557899999999999999999999999976 227789999999999998877654311111 1122377999
Q ss_pred HHhHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhhhcccCCchHHH-HHHHH-HHHhhccCC
Q 001790 77 RKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGDTKTAR-GIMLI-ELKKLIEAN 154 (1012)
Q Consensus 77 ~~~~~~ell~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r-~~l~~-~l~~~~~~~ 154 (1012)
+.|.|+||+..+++.+|+.+.++.|.|....++++++....++.++.......+... -...| +.|.. .++.+.+--
T Consensus 194 RlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t~~sky~~l--~~~~rw~~l~~lF~s~a~~l~ 271 (389)
T KOG0396|consen 194 RLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYTSSSKYLNL--LTADRWSVLADLFLSEALKLF 271 (389)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccccCcccccCc--ccHHHHHHHHHHhhHHHHHHh
Confidence 999999999999999999999999999988899999999999988654433322111 12223 22221 333333321
Q ss_pred ccccccccCCCCc-hhHHHHHHHHHHHHHH-hcCCCC
Q 001790 155 PLFRDKLAFPTLK-SSRLRTLINQSLNWQH-QLCKNP 189 (1012)
Q Consensus 155 ~~~~~~~~~~~~p-~~rL~~ll~~~~~~q~-~~~~~~ 189 (1012)
. +| ..+|..+|+-.+..|. ..|.+.
T Consensus 272 ~----------i~~~~~L~~~l~~GLsalKTp~c~~~ 298 (389)
T KOG0396|consen 272 G----------IPINPALTIYLQAGLSALKTPRCLND 298 (389)
T ss_pred C----------CCCCcHHHHHHHhhhhhccccccccc
Confidence 1 22 2358888887777763 345544
No 313
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.54 E-value=2.4e-07 Score=63.63 Aligned_cols=39 Identities=28% Similarity=0.564 Sum_probs=37.1
Q ss_pred CeEeEEecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001790 905 DEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 943 (1012)
Q Consensus 905 ~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd 943 (1012)
|+++.++.+|.+.|++|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 314
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.54 E-value=5e-05 Score=82.88 Aligned_cols=302 Identities=15% Similarity=0.154 Sum_probs=154.7
Q ss_pred ecCCCEEEEEe---------CCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCCcee
Q 001790 594 DTTQNHFLAVG---------EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRS 664 (1012)
Q Consensus 594 s~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~ 664 (1012)
|||+++++... ..+.+.+||+.+++....... ...+....|||+|+.+|... ++.|.+++..++...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~---~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP---PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E---ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC---ccccccceeecCCCeeEEEe-cCceEEEECCCCCeE
Confidence 56777766643 246789999999776554433 23678999999999999886 468999988776333
Q ss_pred eecccCCcc-----------ccccCccceeeeccccccccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCccccc
Q 001790 665 LRAVENPPF-----------EALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDD 733 (1012)
Q Consensus 665 ~~~~~~~~~-----------~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 733 (1012)
.-+..+... +...+.-.++.|||||+.++ ...
T Consensus 77 ~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la-------------------------------------~~~ 119 (353)
T PF00930_consen 77 QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLA-------------------------------------FLR 119 (353)
T ss_dssp ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEE-------------------------------------EEE
T ss_pred EeccccceeEEcCccceeccccccccccceEECCCCCEEE-------------------------------------EEE
Confidence 222222100 00011234455666666654 222
Q ss_pred -ccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeeccCeeEeeeccccccCCCCCcccccccee
Q 001790 734 -VTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQH 812 (1012)
Q Consensus 734 -~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~ 812 (1012)
.+..++.+.+........ ..-.+..+.+-.-| ..+-.+++ .+
T Consensus 120 ~d~~~v~~~~~~~~~~~~~-----------~yp~~~~~~YPk~G------~~np~v~l--------------------~v 162 (353)
T PF00930_consen 120 FDEREVPEYPLPDYSPPDS-----------QYPEVESIRYPKAG------DPNPRVSL--------------------FV 162 (353)
T ss_dssp EE-TTS-EEEEEEESSSTE-----------SS-EEEEEE--BTT------S---EEEE--------------------EE
T ss_pred ECCcCCceEEeeccCCccc-----------cCCcccccccCCCC------CcCCceEE--------------------EE
Confidence 224444444433221110 00012222221111 11122222 23
Q ss_pred eccCCCceeeeccc--CCCCCCCEeEEEEeeCCCEEEEE-c--CC---cEEEEEcCCCeEEEEEcC-CCC---CeeEEEE
Q 001790 813 WLPSSGLLMANDVA--GVNLEEAVPCIALSKNDSYVMSA-T--GG---KISLFNMMTFKVMTTFMS-PPP---ASTFLAF 880 (1012)
Q Consensus 813 ~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~dg~~la~~-s--dg---~i~lwd~~~~~~~~~~~~-~~~---~i~~l~~ 880 (1012)
+++.++........ ......-+..+.|++|++.|+.. . +. .+.+.|..++........ ..+ .-....|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~ 242 (353)
T PF00930_consen 163 VDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHF 242 (353)
T ss_dssp EESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE
T ss_pred EECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeeccccc
Confidence 34444433221111 01145668889999999944433 2 22 377788877755433332 222 2335666
Q ss_pred e-cCCCcEEEEEeCCC--eEEEEEccCCeEeEEecccCCCeEE-EEEcCCCCEEE-EEeCC----CcEEEEeCC-CCCcc
Q 001790 881 H-PQDNNIIAIGTEDS--TIHIYNVRVDEVKSKLKGHQKRITG-LAFSTSLNILV-SSGAD----AQLCVWSID-TWEKR 950 (1012)
Q Consensus 881 s-p~d~~~las~~~dg--~v~iwd~~~~~~~~~~~~h~~~V~~-l~~spdg~~l~-s~s~D----g~i~vwd~~-~~~~~ 950 (1012)
. ++++.+|.....|| .|.+++..++... .+....-.|+. +.++++++.|. ++..+ ..|+.-+++ +++..
T Consensus 243 ~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~ 321 (353)
T PF00930_consen 243 LGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPK 321 (353)
T ss_dssp -TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEE
T ss_pred ccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeE
Confidence 5 64677777777888 5556666666533 55545566755 67888877665 44442 246666666 44421
Q ss_pred ccEEEecCCCCCCCCceEEEEcCCCCEEEEE
Q 001790 951 KSVTIHIPAGKTPTGDTRVQFNADQVRMLVV 981 (1012)
Q Consensus 951 ~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~ 981 (1012)
++....+. -..+.|||||++++..
T Consensus 322 ---~LT~~~~~----~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 322 ---CLTCEDGD----HYSASFSPDGKYYVDT 345 (353)
T ss_dssp ---ESSTTSST----TEEEEE-TTSSEEEEE
T ss_pred ---eccCCCCC----ceEEEECCCCCEEEEE
Confidence 22222221 1589999999999875
No 315
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.53 E-value=1.8e-05 Score=87.55 Aligned_cols=104 Identities=16% Similarity=0.173 Sum_probs=76.0
Q ss_pred EeeCCCEEEEEcCCcEEEEEcCC-----CeEEEEEcCCCCCeeEEEEecCCCcEEEEE-eCCCeEEEEEccCCe------
Q 001790 839 LSKNDSYVMSATGGKISLFNMMT-----FKVMTTFMSPPPASTFLAFHPQDNNIIAIG-TEDSTIHIYNVRVDE------ 906 (1012)
Q Consensus 839 ~s~dg~~la~~sdg~i~lwd~~~-----~~~~~~~~~~~~~i~~l~~sp~d~~~las~-~~dg~v~iwd~~~~~------ 906 (1012)
+.+||++... .+++|.+.|..+ .+.+..+. -......++++| ||++++++ ..+.+|.|.|+.+.+
T Consensus 284 ~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 284 AVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 3457887665 467899999988 34555444 334567899999 77766555 458899999998754
Q ss_pred ------EeEEecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001790 907 ------VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT 946 (1012)
Q Consensus 907 ------~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~ 946 (1012)
.+.+..--.++ ...+|.++|....|..-|..|..||+..
T Consensus 361 ~~~~~~vvaevevGlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAVVAEPELGLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCccceEEEeeccCCCc-ceEEECCCCCEEEeEeecceeEEEehHH
Confidence 24444433333 4678999999888999999999999986
No 316
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.51 E-value=1.9e-05 Score=81.43 Aligned_cols=220 Identities=15% Similarity=0.097 Sum_probs=137.2
Q ss_pred CCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCCccCEEEEecccc
Q 001790 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHK 505 (1012)
Q Consensus 427 d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~v~~~~~~~~ 505 (1012)
+|+|..||..+|+.+-... +..-.....+. ..+++. .+++++.++.+..|| .+|+.+..+.. ...+...-. .
T Consensus 2 ~g~l~~~d~~tG~~~W~~~-~~~~~~~~~~~-~~~~~~--~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-~- 74 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYD-LGPGIGGPVAT-AVPDGG--RVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV-V- 74 (238)
T ss_dssp TSEEEEEETTTTEEEEEEE-CSSSCSSEEET-EEEETT--EEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE-E-
T ss_pred CCEEEEEECCCCCEEEEEE-CCCCCCCccce-EEEeCC--EEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee-e-
Confidence 6788999998887765432 21111222221 232455 466677899999999 79998876653 111111001 1
Q ss_pred CCceEEEEEecCCeEEEEEcCCCCceeee-cCCC---CcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeec
Q 001790 506 ENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPG---HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1012)
Q Consensus 506 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~---~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~ 581 (1012)
++..++.++.++.+..+|..+++..... .... ..........++..++++. .++.|..+|.++|+.+..+.
T Consensus 75 -~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~l~~~d~~tG~~~w~~~ 149 (238)
T PF13360_consen 75 -DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGT----SSGKLVALDPKTGKLLWKYP 149 (238)
T ss_dssp -ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEE----TCSEEEEEETTTTEEEEEEE
T ss_pred -cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEe----ccCcEEEEecCCCcEEEEee
Confidence 2235667778889999999999988873 3221 1122223333477777776 38899999999999988877
Q ss_pred CCCCCc---------ceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCc
Q 001790 582 GFRKKS---------NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (1012)
Q Consensus 582 ~~~~~~---------v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~ 652 (1012)
...... +..-....++ .++.++.++.+..+|+.+++.+.... .. .+.. ....++..+++++.++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~---~~~~-~~~~~~~~l~~~~~~~~ 223 (238)
T PF13360_consen 150 VGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-IS---GIYS-LPSVDGGTLYVTSSDGR 223 (238)
T ss_dssp SSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS----ECE-CEECCCTEEEEEETTTE
T ss_pred cCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CC---CccC-CceeeCCEEEEEeCCCE
Confidence 643211 1111122233 78888888865555999999765333 22 1222 14567888888889999
Q ss_pred EEEEEccCCcee
Q 001790 653 FKILANAIGLRS 664 (1012)
Q Consensus 653 i~iwd~~~~~~~ 664 (1012)
+..||+.+++..
T Consensus 224 l~~~d~~tG~~~ 235 (238)
T PF13360_consen 224 LYALDLKTGKVV 235 (238)
T ss_dssp EEEEETTTTEEE
T ss_pred EEEEECCCCCEE
Confidence 999999998544
No 317
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.50 E-value=0.00044 Score=66.30 Aligned_cols=145 Identities=8% Similarity=0.064 Sum_probs=92.8
Q ss_pred EecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEECCCeEE
Q 001790 352 FHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQ 431 (1012)
Q Consensus 352 ~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~v~ 431 (1012)
.-+|.+.+++.|+..+.+.--|..+|+...+.. + ...|.+-+.- -|++++.|...|.++
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~i-----------------l---g~RiE~sa~v-vgdfVV~GCy~g~lY 76 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-----------------L---GVRIECSAIV-VGDFVVLGCYSGGLY 76 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehh-----------------h---CceeeeeeEE-ECCEEEEEEccCcEE
Confidence 345666689999999999999999998775311 1 1233332222 478899999999999
Q ss_pred EEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCCccCEEEEeccccCCceE
Q 001790 432 LYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQF 510 (1012)
Q Consensus 432 vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 510 (1012)
+.+.++|+....+..+..- =......+++. ++..|+.|++.+..| .+..++...+-..+...+-++.+. ++ .
T Consensus 77 fl~~~tGs~~w~f~~~~~v---k~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g-~~-s 149 (354)
T KOG4649|consen 77 FLCVKTGSQIWNFVILETV---KVRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPG-DG-S 149 (354)
T ss_pred EEEecchhheeeeeehhhh---ccceEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCC-Cc-e
Confidence 9999999766543332211 11233456777 899999999999999 777777776543332222233222 32 3
Q ss_pred EEEEecCCeEEEEE
Q 001790 511 IFSTAIDGKIKAWL 524 (1012)
Q Consensus 511 l~s~~~dg~i~~wd 524 (1012)
|+.+...|.+.--.
T Consensus 150 ly~a~t~G~vlavt 163 (354)
T KOG4649|consen 150 LYAAITAGAVLAVT 163 (354)
T ss_pred EEEEeccceEEEEc
Confidence 44455555554333
No 318
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.50 E-value=0.00012 Score=75.01 Aligned_cols=137 Identities=9% Similarity=0.087 Sum_probs=90.5
Q ss_pred CeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeee------cCCCCCcEEEEeCCCCeeeeeecCCCC------
Q 001790 518 GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT------SKDGDSFLVEWNESEGTIKRTYAGFRK------ 585 (1012)
Q Consensus 518 g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------~~~~~~~i~lwd~~~~~~~~~~~~~~~------ 585 (1012)
+++.++|.++++..-.+... ....+..+||++.++++.. .+...-.|.+||..+-.....+.-..+
T Consensus 17 ~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 36777887776544333322 2334668999999987653 123456799999999877765443221
Q ss_pred CcceEEEEecCCCEEEEEe--CCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCC
Q 001790 586 KSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1012)
Q Consensus 586 ~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~ 661 (1012)
......+++.|++++++.. -...|.|.|+..++.+..+..++. ..+--+. .+.+.+-+.||.+.-..+...
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC----~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~ 167 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGC----WLIYPSG-NRGFSMLCGDGSLLTVTLDAD 167 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSE----EEEEEEE-TTEEEEEETTSCEEEEEETST
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCE----EEEEecC-CCceEEEecCCceEEEEECCC
Confidence 1234478999999988854 567899999999999999987652 2222222 346788889999988888743
No 319
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.48 E-value=7.9e-05 Score=86.49 Aligned_cols=123 Identities=17% Similarity=0.251 Sum_probs=85.3
Q ss_pred EeEEEEeeCCCEEEEE-----cC-CcEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEEe---CCCeEEEEEccC
Q 001790 834 VPCIALSKNDSYVMSA-----TG-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT---EDSTIHIYNVRV 904 (1012)
Q Consensus 834 v~~~~~s~dg~~la~~-----sd-g~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~---~dg~v~iwd~~~ 904 (1012)
=+.+.|--||+++|+. .+ ..|++||.+ |.+-.+-....+.-.+++|-| .|.++|+-. .|+.|.++.-+.
T Consensus 198 ~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNG 275 (1265)
T KOG1920|consen 198 KTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNG 275 (1265)
T ss_pred CceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCC
Confidence 3568888999999884 34 679999987 554443333344457899999 888888754 455799998543
Q ss_pred ---CeEeEEecccCCCeEEEEEcCCCCEEEE---EeCCCcEEEEeCCCCCccccEEEecC
Q 001790 905 ---DEVKSKLKGHQKRITGLAFSTSLNILVS---SGADAQLCVWSIDTWEKRKSVTIHIP 958 (1012)
Q Consensus 905 ---~~~~~~~~~h~~~V~~l~~spdg~~l~s---~s~Dg~i~vwd~~~~~~~~~~~~~~~ 958 (1012)
|+....+.....+|..++|+.++..||. ......|++|-+.+........+..+
T Consensus 276 L~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~ 335 (1265)
T KOG1920|consen 276 LRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFS 335 (1265)
T ss_pred ccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecc
Confidence 2222233444455999999999999998 45555699999998776544444433
No 320
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.47 E-value=4.2e-07 Score=89.73 Aligned_cols=140 Identities=16% Similarity=0.233 Sum_probs=104.9
Q ss_pred CCCCEeEEEEeeCCCEEEEEc-CCcEEEEEcCCC-----eEEEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEcc
Q 001790 830 LEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTF-----KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR 903 (1012)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~s-dg~i~lwd~~~~-----~~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~ 903 (1012)
..+.|.++.|...+.++..|. +|.|..+|+..+ .+.+.+ -|...|+++..-.-++++|++.+.+|+|.+||..
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R 329 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR 329 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence 456788888888888999998 899999999865 333344 3888888887654466788889999999999998
Q ss_pred CCeE---eEEecccCCCeEEEE--EcCCCCEEEEEeCCCcEEEEeCCCCCccccEEEecCCCCCCCCceEEEEc
Q 001790 904 VDEV---KSKLKGHQKRITGLA--FSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFN 972 (1012)
Q Consensus 904 ~~~~---~~~~~~h~~~V~~l~--~spdg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs 972 (1012)
--++ +.++.||...-.-+- ..+....++++|+|...|||.++.|..+.+++....... ..+.+++|.
T Consensus 330 ~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e--~d~~sv~~~ 401 (425)
T KOG2695|consen 330 ATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASE--VDIPSVAFD 401 (425)
T ss_pred hhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCcccc--ccccceehh
Confidence 7666 889999976544443 346677899999999999999999997765543322221 345666664
No 321
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.47 E-value=8.2e-05 Score=82.57 Aligned_cols=102 Identities=17% Similarity=0.140 Sum_probs=70.4
Q ss_pred CCCEeEEEEeeCCCEEEEEc--CCcEEEEEcCCCeE------------EEEEcCCCCCeeEEEEecCCCcEEEEEeCCCe
Q 001790 831 EEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKV------------MTTFMSPPPASTFLAFHPQDNNIIAIGTEDST 896 (1012)
Q Consensus 831 ~~~v~~~~~s~dg~~la~~s--dg~i~lwd~~~~~~------------~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~ 896 (1012)
......+.+||||+++++++ ++++.|+|+.+.+. ..+..-.. .....+|.+ +|....+-.-|..
T Consensus 320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl-GPLHTaFDg-~G~aytslf~dsq 397 (635)
T PRK02888 320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL-GPLHTAFDG-RGNAYTTLFLDSQ 397 (635)
T ss_pred CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC-CcceEEECC-CCCEEEeEeecce
Confidence 45567799999999998887 78999999987653 33333222 345678998 7888888999999
Q ss_pred EEEEEccC----------CeEeEEecccCCCe-----EEEEEcCCCCEEEEEe
Q 001790 897 IHIYNVRV----------DEVKSKLKGHQKRI-----TGLAFSTSLNILVSSG 934 (1012)
Q Consensus 897 v~iwd~~~----------~~~~~~~~~h~~~V-----~~l~~spdg~~l~s~s 934 (1012)
|..|++.+ ...+..+.-|-.+- ..=.-.|||++|++..
T Consensus 398 v~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 398 IVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred eEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 99999986 34455444332221 1112357888887753
No 322
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.45 E-value=6e-07 Score=88.68 Aligned_cols=164 Identities=16% Similarity=0.117 Sum_probs=120.0
Q ss_pred EEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEECCCeE
Q 001790 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLI 430 (1012)
Q Consensus 351 ~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~v 430 (1012)
+||=+-.-+-++.+.+..|-+-|+.+|-... +. ..+.|.++.|...+.++..|..+|.|
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f~-sksDVfAlQf~~s~nLv~~GcRngeI 276 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------FQ-SKSDVFALQFAGSDNLVFNGCRNGEI 276 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccccc--------------------cc-cchhHHHHHhcccCCeeEecccCCcE
Confidence 6653322122333447788888998875432 22 56789999999999999999999999
Q ss_pred EEEeecCCCcc--eeeeeeeccccCeEEEEEeC-CCCceEEEEEcCCCcEEEEe-CCCcc---eeeecCCccCEEEEecc
Q 001790 431 QLYSYAGSNDL--RQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-LSGRK---LFNFEGHEAPVYSICPH 503 (1012)
Q Consensus 431 ~vwd~~~~~~~--~~~~~l~~h~~~v~~l~~s~-~~~~~~l~s~~~d~~v~vwd-~~~~~---~~~~~~h~~~v~~~~~~ 503 (1012)
.++|+..+..- ... ..--|...|+++.... +++ +|.+.+.+|.|++|| .--++ +..+.||-..-.-+-++
T Consensus 277 ~~iDLR~rnqG~~~~a-~rlyh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~ 353 (425)
T KOG2695|consen 277 FVIDLRCRNQGNGWCA-QRLYHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAH 353 (425)
T ss_pred EEEEeeecccCCCcce-EEEEcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeecccccccccccc
Confidence 99999875211 111 1224889999988776 566 788899999999999 44444 88999997766555555
Q ss_pred ccCCceEEEEEecCCeEEEEEcCCCCceeeecCCC
Q 001790 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538 (1012)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~ 538 (1012)
-.+....+++++.|-..|+|.++.+....++....
T Consensus 354 v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 354 VKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred cccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence 56666789999999999999999887776655443
No 323
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=5.3e-06 Score=91.32 Aligned_cols=336 Identities=11% Similarity=0.080 Sum_probs=181.3
Q ss_pred EEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEE
Q 001790 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT 621 (1012)
Q Consensus 542 ~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 621 (1012)
+-..|+|...++++++.+....|.|.||- .+|++.+...-.- .+++++|+|..-.|+.|-.-|.+.+|...+.+.-.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~--hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht 95 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPV--HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT 95 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccce--ehhhhccChHHHHHhhccccceeEEEecCCceeee
Confidence 44578999999999988877889999884 5676554433221 35679999998888888899999999987766554
Q ss_pred EEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCCcee-eecccCCccccccCccceeeecccccccc----ccC
Q 001790 622 STDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRS-LRAVENPPFEALRTPIESVALKVSASSAV----SSG 696 (1012)
Q Consensus 622 ~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~v~~v~~s~~g~~l~----~~~ 696 (1012)
... .|..+|..+.||++|..+.++..-|.+.+|......+. ...+-.+.... .-..++..+++++.-++ ++.
T Consensus 96 v~~--th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~-~ltl~cfRL~~~~Ee~~~laKaaV 172 (1416)
T KOG3617|consen 96 VVE--THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELND-QLTLWCFRLSYDREEKFKLAKAAV 172 (1416)
T ss_pred ecc--CCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhc-eeeEEEEecCCChHHhhhhhhhhc
Confidence 444 34558999999999999999999999999987632111 11111111110 01133445556644332 112
Q ss_pred CCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCc
Q 001790 697 TPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSA 776 (1012)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g 776 (1012)
+++...++.....+....-........++|..+..++.+|+|.-.|-. +..+.+.--+ +. ..+.|.+..
T Consensus 173 tgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~-----g~~~~V~k~d-----S~-vQmLf~~~~ 241 (1416)
T KOG3617|consen 173 TGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQN-----GRQRTVHKLD-----SE-VQMLFMGYC 241 (1416)
T ss_pred cCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCC-----CcEEEEEEcc-----ch-HHHHHhccc
Confidence 222222221111111111112334556778888888888887766532 1111111000 00 112222322
Q ss_pred ceEEEeeccCeeEeeecccc-cc------CCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEEE
Q 001790 777 VGLLALGSNGVQKLWKWHRN-EQ------NPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSA 849 (1012)
Q Consensus 777 ~~l~~~~~dg~i~~w~~~~~-~~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~ 849 (1012)
..+++.-.+-++.++-+... .. ..+|+.-.....--..-.+|.+....-.+......+.|++++.-+..|+.|
T Consensus 242 eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~ag 321 (1416)
T KOG3617|consen 242 EAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAG 321 (1416)
T ss_pred ceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEec
Confidence 23333333333333322110 00 000000000000000011122222222233467789999999999999988
Q ss_pred c-CCcEEEEEcC-C------CeEEEEEcC---CCCCeeEEEEecCCCcEEEEEeCCC
Q 001790 850 T-GGKISLFNMM-T------FKVMTTFMS---PPPASTFLAFHPQDNNIIAIGTEDS 895 (1012)
Q Consensus 850 s-dg~i~lwd~~-~------~~~~~~~~~---~~~~i~~l~~sp~d~~~las~~~dg 895 (1012)
. .|.+.+|--. . +.-..++.+ ..+.|+.+.|.| -...+++.+...
T Consensus 322 t~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~-~k~~~avn~~~~ 377 (1416)
T KOG3617|consen 322 TKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGP-IKSTAAVNTEED 377 (1416)
T ss_pred ccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEecc-ccchhhhhhhhh
Confidence 7 7999999432 2 122333433 345799999998 666665554433
No 324
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=98.41 E-value=9.5e-07 Score=82.31 Aligned_cols=133 Identities=21% Similarity=0.214 Sum_probs=99.2
Q ss_pred HHHHHHHhhccCHHHHHHHHcCCCCCCCcccchhHHHHHHHhHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHH
Q 001790 38 MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQ 117 (1012)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~ell~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~ 117 (1012)
...++++|++|+++.|+..+....+.-.+.. ..+.|.|+.|+|+|||..++..+|+.+.|+.+.|......+.+..+..
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~-~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~ 83 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKRN-SSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS 83 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhcC-CchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4678999999999999999998754332222 338999999999999999999999999999997764446678888888
Q ss_pred hhcccCccc--hhhhcccCCchHHHHHHHHHHHhhccCCccccccccCCCCc-hhHHHHHHHHHHHH
Q 001790 118 LLTLSNFRE--NEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLK-SSRLRTLINQSLNW 181 (1012)
Q Consensus 118 ~~~~~~~~~--~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~ll~~~~~~ 181 (1012)
+|.....++ ...+...-+ ...|..+.+.+.+.+-..-- +| .+.|+.++.+....
T Consensus 84 lL~~~~~~~~~~s~~~~l~~-~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~ 140 (145)
T PF10607_consen 84 LLAYPDPEEPLPSPYKELLS-PERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSA 140 (145)
T ss_pred HHHcCCcccccchHHHHHhC-hHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHH
Confidence 888876654 233333323 37789999988886654222 44 45788888776544
No 325
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.41 E-value=7.9e-06 Score=77.78 Aligned_cols=161 Identities=16% Similarity=0.181 Sum_probs=101.6
Q ss_pred CCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001790 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1012)
Q Consensus 343 h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 422 (1012)
|.++-.+-+.+--+.. +++|..||.+.+.+.+.-..+.+ ++-..|.+.. +.++-..+..+.
T Consensus 88 ~sep~p~~~~s~~~t~-V~~~~~dg~~~v~s~~~~~~~~~-----------------~i~~~~~~~a-s~~~~~~~~~i~ 148 (319)
T KOG4714|consen 88 NSEIDPNDACTMTDNR-VCIGYADGSLAVFSTDKDLALMS-----------------RIPSIHSGSA-SRKICRHGNSIL 148 (319)
T ss_pred cCCCCCcccccccCCc-eEecCCCceEEEEechHHHhhhh-----------------hccccccccc-ccceeecccEEe
Confidence 5444444444444553 88999999999999765211110 1111122211 122223445554
Q ss_pred EEE-----CCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCC-cceeeecCCcc
Q 001790 423 VAF-----TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLFNFEGHEA 495 (1012)
Q Consensus 423 s~~-----~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~-~~~~~~~~h~~ 495 (1012)
++. .-+..+.|+++-.+.+.. -..-...|.+++-+|..++ .+++|+.||.+-+|| ... .+...+..|..
T Consensus 149 s~~~g~~n~~d~~~a~~~~p~~t~~~---~~~~~~~v~~l~~hp~qq~-~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~ 224 (319)
T KOG4714|consen 149 SGGCGNWNAQDNFYANTLDPIKTLIP---SKKALDAVTALCSHPAQQH-LVCCGTDDGIVGLWDARNVAMPVSLLKAHKA 224 (319)
T ss_pred cCCcceEeeccceeeecccccccccc---cccccccchhhhCCccccc-EEEEecCCCeEEEEEcccccchHHHHHHhhh
Confidence 432 123356777654332221 1112234999999998776 789999999999999 444 44566788999
Q ss_pred CEEEEeccccCCceEEEEEecCCeEEEEEcCC
Q 001790 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (1012)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~ 527 (1012)
+++.+-|+|. ++..|+++++||.+-.||..+
T Consensus 225 ~i~eV~FHpk-~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 225 EIWEVHFHPK-NPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hhhheeccCC-CchheeEecCCCcEEEEcCCC
Confidence 9999999987 457899999999999998654
No 326
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=9.2e-06 Score=83.37 Aligned_cols=252 Identities=13% Similarity=0.097 Sum_probs=169.9
Q ss_pred CCcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcC-CCcEEEEe-C
Q 001790 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-DKLIKVWE-L 482 (1012)
Q Consensus 405 h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~-d~~v~vwd-~ 482 (1012)
|.+.|+.+..+ -.+++.+++.||.++.|.-..-.-+.-...+..|-+.|.+++.+-++. ++.|.+. |..++++| .
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~--L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW--LFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce--eEeeccCcccceeEEEee
Confidence 78888887655 467999999999999997654222322224667899999999999998 8889777 99999999 4
Q ss_pred CCccee--eecCCccCEEEEeccccCCc--eEEEEEecCCeEEEEEcCCCCce--eeecCCCCcEEEEEEccCCCeEEEe
Q 001790 483 SGRKLF--NFEGHEAPVYSICPHHKENI--QFIFSTAIDGKIKAWLYDTMGSR--VDYDAPGHWCTTMLYSADGSRLFSC 556 (1012)
Q Consensus 483 ~~~~~~--~~~~h~~~v~~~~~~~~~~~--~~l~s~~~dg~i~~wd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~ 556 (1012)
+-..+. .+..-.+.+..+. ..++- .+-++.-.+|.+.++|-....+. ..-..|..+|..+.+.+-+..+++.
T Consensus 85 n~DminmiKL~~lPg~a~wv~--skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSi 162 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFAEWVT--SKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSI 162 (558)
T ss_pred ccchhhhcccccCCCceEEec--CCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeec
Confidence 433332 2222222232221 11111 22333446788999987655433 3445678899999999999988887
Q ss_pred eecCCCCCcEEEEeCCC------CeeeeeecC--------CCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEE
Q 001790 557 GTSKDGDSFLVEWNESE------GTIKRTYAG--------FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTS 622 (1012)
Q Consensus 557 ~~~~~~~~~i~lwd~~~------~~~~~~~~~--------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 622 (1012)
- ..|.|.-|.... ......+.. ..+....++.|+|++..+.+-+.|..|++++..+++.++.
T Consensus 163 D----~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 163 D----ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred c----ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence 5 578999998762 111111111 1123567899999999999999999999999999887654
Q ss_pred EecC-------------------------------CCCCCcceeEeecCCCEEEEEECCCcEEEEEccCCceeeec
Q 001790 623 TDAE-------------------------------GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRA 667 (1012)
Q Consensus 623 ~~~~-------------------------------~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~ 667 (1012)
+... .+...-+.+.|...|++|+.|+-= .|++.++.++ .+.+.
T Consensus 239 iDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~-gikvin~~tn-~v~ri 312 (558)
T KOG0882|consen 239 IDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL-GIKVINLDTN-TVVRI 312 (558)
T ss_pred hhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce-eEEEEEeecC-eEEEE
Confidence 4311 011123567788888888887654 5788888877 34443
No 327
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.39 E-value=0.00019 Score=78.31 Aligned_cols=296 Identities=16% Similarity=0.178 Sum_probs=153.0
Q ss_pred ecCCCcEEEEe--------cCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEE
Q 001790 353 HPSHQTLLLVG--------SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1012)
Q Consensus 353 spdg~~llasg--------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 424 (1012)
|||++++|+.- +..+.+.|||+.+++... +......+....|||||+.+|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence 68998655522 224678899998876542 11124578889999999999988
Q ss_pred ECCCeEEEEeecCCCcceeeeeeec-------c---------ccCeEEEEEeCCCCceEEEEEc-CCCcEEEEeCCCcce
Q 001790 425 FTKHLIQLYSYAGSNDLRQHSQIDA-------H---------VGAVNDLAFAYPNKLLCVVTCG-DDKLIKVWELSGRKL 487 (1012)
Q Consensus 425 ~~d~~v~vwd~~~~~~~~~~~~l~~-------h---------~~~v~~l~~s~~~~~~~l~s~~-~d~~v~vwd~~~~~~ 487 (1012)
. ++.|.+++..+++..+. +..| - -+.-..+-|||||++ |+... .+..|..+..
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~--la~~~~d~~~v~~~~~----- 130 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY--LAFLRFDEREVPEYPL----- 130 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE--EEEEEEE-TTS-EEEE-----
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCE--EEEEEECCcCCceEEe-----
Confidence 5 56799999887743332 1222 0 112356889999995 44433 2344444330
Q ss_pred eeecCCc---cCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCcee-ee----cCCCCcEEEEEEccCCCeEEEeeec
Q 001790 488 FNFEGHE---APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DY----DAPGHWCTTMLYSADGSRLFSCGTS 559 (1012)
Q Consensus 488 ~~~~~h~---~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-~~----~~~~~~v~~~~~s~~~~~l~~~~~~ 559 (1012)
....... -.+..+.+ |.+. .-. ..-.+.++|+.+++... .. .....-+..+.|+++++.+++.-.+
T Consensus 131 ~~~~~~~~~yp~~~~~~Y-Pk~G-~~n----p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~n 204 (353)
T PF00930_consen 131 PDYSPPDSQYPEVESIRY-PKAG-DPN----PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLN 204 (353)
T ss_dssp EEESSSTESS-EEEEEE---BTT-S-------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEE
T ss_pred eccCCccccCCccccccc-CCCC-CcC----CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcc
Confidence 0001111 12333332 1111 111 01135567777665432 11 2345578999999999955544433
Q ss_pred C-CCCCcEEEEeCCCCeeeeeecCCCCCc---ceEEEEe-cCCCEEEEEe-CCCc--EEEEeCCCCeeEEEEecCCCCCC
Q 001790 560 K-DGDSFLVEWNESEGTIKRTYAGFRKKS---NGVVQFD-TTQNHFLAVG-EDSQ--IKFWDMDNVNILTSTDAEGGLPN 631 (1012)
Q Consensus 560 ~-~~~~~i~lwd~~~~~~~~~~~~~~~~~---v~~~~~s-~~~~~l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~~ 631 (1012)
. .+...+.+.|..++............. .....+. +++..++..+ .+|. |++++...+... .+. .+.-.
T Consensus 205 R~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT--~G~~~ 281 (353)
T PF00930_consen 205 RDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLT--SGDWE 281 (353)
T ss_dssp TTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS---SSS-
T ss_pred cCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccc--cCcee
Confidence 2 234456778887776554443332222 2345554 6666555544 5664 555566666533 333 22224
Q ss_pred cc-eeEeecCCCEEEEEECC---C--cEEEEEcc-CCceeeecccCCccccccCcc-ceeeecccccccccc
Q 001790 632 LP-RLRFSKEGNLLAVTTAD---N--GFKILANA-IGLRSLRAVENPPFEALRTPI-ESVALKVSASSAVSS 695 (1012)
Q Consensus 632 v~-~v~~s~~g~~l~~~~~d---g--~i~iwd~~-~~~~~~~~~~~~~~~~~~~~v-~~v~~s~~g~~l~~~ 695 (1012)
|. -+.++++++.+...+.. + .+..-++. .+ ....+.... .. ..+.|||+|++++..
T Consensus 282 V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~--~~~~LT~~~------~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 282 VTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG--EPKCLTCED------GDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT--EEEESSTTS------STTEEEEE-TTSSEEEEE
T ss_pred ecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC--CeEeccCCC------CCceEEEECCCCCEEEEE
Confidence 53 46788887766544432 2 34444444 22 222222211 12 478999999988643
No 328
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.39 E-value=0.00056 Score=70.31 Aligned_cols=78 Identities=13% Similarity=0.250 Sum_probs=53.6
Q ss_pred eEEEEEcCCCCEEEEEe---CCC-------cEEEEeCCCCCccccEEEecCCCCCCCCceEEEEcCCCC-EEEEE--eCC
Q 001790 918 ITGLAFSTSLNILVSSG---ADA-------QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQV-RMLVV--HET 984 (1012)
Q Consensus 918 V~~l~~spdg~~l~s~s---~Dg-------~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~-~l~~~--~d~ 984 (1012)
-.-+++++...+|+..- .++ .|.++|+.+++.+..+.+. .++.++..+.|.+ +|++. .++
T Consensus 240 ~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-------~~~~Si~Vsqd~~P~L~~~~~~~~ 312 (342)
T PF06433_consen 240 WQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-------HPIDSIAVSQDDKPLLYALSAGDG 312 (342)
T ss_dssp SS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-------EEESEEEEESSSS-EEEEEETTTT
T ss_pred eeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-------CccceEEEccCCCcEEEEEcCCCC
Confidence 34577776655555431 122 4889999999988777665 4578999999987 45443 478
Q ss_pred eEEEEECCCceEEEeecC
Q 001790 985 QLAIYDASKMERIRQVGS 1002 (1012)
Q Consensus 985 ~i~vwd~~~~~~~~~~~~ 1002 (1012)
.+.+||..+|+.+++..+
T Consensus 313 ~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 313 TLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEEETTT--EEEEE--
T ss_pred eEEEEeCcCCcEEeehhc
Confidence 999999999999999876
No 329
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.36 E-value=0.00011 Score=80.49 Aligned_cols=283 Identities=13% Similarity=0.075 Sum_probs=160.7
Q ss_pred CCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001790 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1012)
Q Consensus 343 h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 422 (1012)
|...|.--+++..++ +++.|+.-|.+.+|+-..++.... ...+..+.+..+..|++..++|
T Consensus 32 ~~~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~------------------~~~~~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKL------------------KNEGATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCc-eEEEecccceEEEEecCchhhhcc------------------cccCccceEEEEEecchhHhhh
Confidence 555777778888888 799999999999999877765431 1233456677788999999999
Q ss_pred EEECCCeEEEEeecCCCcceeeeee---eccccCeEEEEEeCCCCceEEEEEcCCCcEEEEeCCCcc-----eeeecCCc
Q 001790 423 VAFTKHLIQLYSYAGSNDLRQHSQI---DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRK-----LFNFEGHE 494 (1012)
Q Consensus 423 s~~~d~~v~vwd~~~~~~~~~~~~l---~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd~~~~~-----~~~~~~h~ 494 (1012)
.|+..|.|.|+-+..+........- ..|...|++++|++++. .+++|...|.|..-..+... .+.+....
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 9999999999988875443322211 24778999999999999 89999999999887733311 12233345
Q ss_pred cCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecC-CCC-cEEEEEEccC----CCeEEEeeecCCCCCcEEE
Q 001790 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-PGH-WCTTMLYSAD----GSRLFSCGTSKDGDSFLVE 568 (1012)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-~~~-~v~~~~~s~~----~~~l~~~~~~~~~~~~i~l 568 (1012)
+.|..+... ++.+|++.. -..+ +++.+...-...-.. ..+ .-...+|-|. .+-.+.|+ ....++
T Consensus 171 s~IVQlD~~---q~~LLVStl-~r~~-Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~Iyca-----RPG~Rl 240 (726)
T KOG3621|consen 171 SEIVQLDYL---QSYLLVSTL-TRCI-LCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCA-----RPGLRL 240 (726)
T ss_pred cceEEeecc---cceehHhhh-hhhh-eeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEe-----cCCCce
Confidence 566666542 223333332 2222 344333221110000 011 1122333332 23333333 333677
Q ss_pred EeCC-CCeeeeeecCCC-------------C----------CcceEEEE----ecCCCEEEEEeCCCcEEEEeCCCCeeE
Q 001790 569 WNES-EGTIKRTYAGFR-------------K----------KSNGVVQF----DTTQNHFLAVGEDSQIKFWDMDNVNIL 620 (1012)
Q Consensus 569 wd~~-~~~~~~~~~~~~-------------~----------~~v~~~~~----s~~~~~l~~~~~dg~i~iwd~~~~~~~ 620 (1012)
|... .|+.+++..-.. . ..-..+.| .-.+..+++-++-| |+|+|.++.+.+
T Consensus 241 Wead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~~v~ 319 (726)
T KOG3621|consen 241 WEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNSQVY 319 (726)
T ss_pred EEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccceEE
Confidence 7654 244443322100 0 00000111 11122444544444 888888776655
Q ss_pred EEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCCc
Q 001790 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGL 662 (1012)
Q Consensus 621 ~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~~ 662 (1012)
.-..... .|.. .+.+|+-|++-..|+.+++..+.+..
T Consensus 320 l~se~~~---DI~d--Vs~~~neiFvL~~d~~l~~~sv~s~q 356 (726)
T KOG3621|consen 320 LWSEGGH---DILD--VSHCGNEIFVLNLDRGLKVESVASRQ 356 (726)
T ss_pred EeecCCC---ceeE--EeecCceEEEEecCCceeEEEeehhH
Confidence 4432221 3433 44466777777778888877776653
No 330
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.33 E-value=2e-06 Score=59.03 Aligned_cols=39 Identities=31% Similarity=0.545 Sum_probs=36.7
Q ss_pred CeEEEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEE
Q 001790 862 FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 901 (1012)
Q Consensus 862 ~~~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd 901 (1012)
++++.++.+|...|++|+|+| ++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 467889999999999999999 899999999999999997
No 331
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.28 E-value=0.017 Score=66.43 Aligned_cols=563 Identities=12% Similarity=0.076 Sum_probs=263.8
Q ss_pred eEEEEEecCCCcEEEEecCCCeEEEEEcc-CCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEE
Q 001790 347 VISMDFHPSHQTLLLVGSSNGEITLWELA-MRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1012)
Q Consensus 347 V~~~~~spdg~~llasg~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~ 425 (1012)
+..-..+++|.+ ...|..+|.+...-+. +++......++ ...-|...-..|+.+-++| .|.+|+
T Consensus 260 ~~~~~v~~~~~~-yLl~d~~G~Lf~l~l~~~~e~~s~~~lk-------------ve~lge~siassi~~L~ng-~lFvGS 324 (1096)
T KOG1897|consen 260 VCYGRVDLQGSR-YLLGDEDGMLFKLLLSHTGETVSGLDLK-------------VEYLGETSIASSINYLDNG-VLFVGS 324 (1096)
T ss_pred EEcccccCCccE-EEEecCCCcEEEEEeecccccccceEEE-------------EEecCCcchhhhhhcccCc-eEEEec
Confidence 333445678885 4456778877766555 55544321111 1133445566677777665 666787
Q ss_pred CCCeEEEEeecCCCcc----eeeeeeeccccCeEEEEEeCC---CCceEEEEEc---CCCcEEEEe--CCCc--ceeeec
Q 001790 426 TKHLIQLYSYAGSNDL----RQHSQIDAHVGAVNDLAFAYP---NKLLCVVTCG---DDKLIKVWE--LSGR--KLFNFE 491 (1012)
Q Consensus 426 ~d~~v~vwd~~~~~~~----~~~~~l~~h~~~v~~l~~s~~---~~~~~l~s~~---~d~~v~vwd--~~~~--~~~~~~ 491 (1012)
.-|.=.+-.+.+.... ....++ ..-++|.+++.-.. ++. .++||+ .||++++.. ..=. ....+.
T Consensus 325 ~~gdSqLi~L~~e~d~gsy~~ilet~-~NLgPI~Dm~Vvd~d~q~q~-qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~ 402 (1096)
T KOG1897|consen 325 RFGDSQLIKLNTEPDVGSYVVILETF-VNLGPIVDMCVVDLDRQGQG-QIVTCSGAFKDGSLRIIRNGIGIDELASIDLP 402 (1096)
T ss_pred cCCceeeEEccccCCCCchhhhhhhc-ccccceeeEEEEeccccCCc-eEEEEeCCCCCCcEEEEecccccceeeEeecC
Confidence 7665555555443222 111112 23457888776543 222 455554 589999987 2222 223344
Q ss_pred CCccCEEEEe--ccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEcc-CCCeEEEeeecCCCCCcEEE
Q 001790 492 GHEAPVYSIC--PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVE 568 (1012)
Q Consensus 492 ~h~~~v~~~~--~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~l 568 (1012)
| -..++.+. +.++.|. +++.+-. +.-++..+...-......+-......+..|. .|+.|+-.. ...|++
T Consensus 403 G-ikg~w~lk~~v~~~~d~-ylvlsf~-~eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvT-----s~~iRl 474 (1096)
T KOG1897|consen 403 G-IKGMWSLKSMVDENYDN-YLVLSFI-SETRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVT-----SNSIRL 474 (1096)
T ss_pred C-ccceeEeeccccccCCc-EEEEEec-cceEEEEEccceEEeccccccccCceEEEEccCCceEEEEe-----cccEEE
Confidence 4 34466665 5555554 4444332 2333444432211111111111222222222 333343333 445777
Q ss_pred EeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCC------C
Q 001790 569 WNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG------N 642 (1012)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g------~ 642 (1012)
++-. .....+.... .++....+.+...++.++.++.+...++..+.+ .......-...|.|+.++|-| +
T Consensus 475 ~ss~--~~~~~W~~p~--~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l-~e~~~~~~e~evaCLDisp~~d~~~~s~ 549 (1096)
T KOG1897|consen 475 VSSA--GLRSEWRPPG--KITIGVVSANASQVVVAGGGLALFYLEIEDGGL-REVSHKEFEYEVACLDISPLGDAPNKSR 549 (1096)
T ss_pred Ecch--hhhhcccCCC--ceEEEEEeecceEEEEecCccEEEEEEeeccce-eeeeeheecceeEEEecccCCCCCCcce
Confidence 7644 2233333322 244444455556778888888888778776653 333323334478999999742 3
Q ss_pred EEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeeccccccccccCCCCCccccccCCCCCCccccCCCCCC
Q 001790 643 LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTS 722 (1012)
Q Consensus 643 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1012)
++++|..+..+.+.-............- ........|--..|
T Consensus 550 ~~aVG~Ws~~~~~l~~~pd~~~~~~~~l-~~~~iPRSIl~~~~------------------------------------- 591 (1096)
T KOG1897|consen 550 LLAVGLWSDISMILTFLPDLILITHEQL-SGEIIPRSILLTTF------------------------------------- 591 (1096)
T ss_pred EEEEEeecceEEEEEECCCcceeeeecc-CCCccchheeeEEe-------------------------------------
Confidence 7888887766555433222111110000 00000000111111
Q ss_pred CCCCCCcccccccCCCCCcceeE--EeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeeccCeeEeeeccc-----
Q 001790 723 RSMDKPRTVDDVTDKPKPWQLAE--IVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHR----- 795 (1012)
Q Consensus 723 ~~~~~~l~~~~~d~~i~~w~~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~----- 795 (1012)
..+..++.++..||.+..+.+.. +...... ... -...++.--.|+..++.-+.+.+|.-..+|....
T Consensus 592 e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~K-k~~-----lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~s 665 (1096)
T KOG1897|consen 592 EGDIHYLLVALGDGALLYFVLDINTGQLSDRK-KVT-----LGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYS 665 (1096)
T ss_pred eccceEEEEEcCCceEEEEEEEcccceEcccc-ccc-----cCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEe
Confidence 12244555566666665444332 1111000 000 0112233333333333222222232222222111
Q ss_pred ----ccc------C----CCCCccccc-cceeeccCCC-ceeeecccCCCCCCCEeEEEEeeCCCEEEEEcC------C-
Q 001790 796 ----NEQ------N----PSGKATASA-VPQHWLPSSG-LLMANDVAGVNLEEAVPCIALSKNDSYVMSATG------G- 852 (1012)
Q Consensus 796 ----~~~------~----~~g~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~sd------g- 852 (1012)
.+. + +++-+.+.. .+.+..+..- ++..+.++ .......+++.+....+++.++ +
T Consensus 666 pls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvp---l~~~prrI~~q~~sl~~~v~s~r~e~~~~~ 742 (1096)
T KOG1897|consen 666 PLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVP---LGESPRRICYQESSLTFGVLSNRIESSAEY 742 (1096)
T ss_pred ccchHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeec---CCCChhheEecccceEEEEEecccccchhh
Confidence 000 0 000000000 1111111110 01111111 3444556666664444444321 1
Q ss_pred --------cEEEEEcCCCeEEEEEcCCC-C---CeeEEEEecCCCcEEEEEe----------CCCeEEEEEccCCeEeEE
Q 001790 853 --------KISLFNMMTFKVMTTFMSPP-P---ASTFLAFHPQDNNIIAIGT----------EDSTIHIYNVRVDEVKSK 910 (1012)
Q Consensus 853 --------~i~lwd~~~~~~~~~~~~~~-~---~i~~l~~sp~d~~~las~~----------~dg~v~iwd~~~~~~~~~ 910 (1012)
.++++|-.+.+.+...+-.. . .+.++.|..+.+.++++|. ..|.|.|+....+..+..
T Consensus 743 ~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~ 822 (1096)
T KOG1897|consen 743 YGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLEL 822 (1096)
T ss_pred cCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceee
Confidence 27777877776655433211 1 2455568874377888876 357888888877433333
Q ss_pred ecc--cCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCccccEEEecCCCCCCCCceEEEEcCCCCEEEEEe-CC--e
Q 001790 911 LKG--HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ET--Q 985 (1012)
Q Consensus 911 ~~~--h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~-d~--~ 985 (1012)
... -.+.|.++..- +|++||.- +..|++|++.+++.+ +....+. .++..+...-.|..+++|. -+ +
T Consensus 823 v~e~~v~Gav~aL~~f-ngkllA~I--n~~vrLye~t~~~eL-----r~e~~~~-~~~~aL~l~v~gdeI~VgDlm~Sit 893 (1096)
T KOG1897|consen 823 VAETVVKGAVYALVEF-NGKLLAGI--NQSVRLYEWTTEREL-----RIECNIS-NPIIALDLQVKGDEIAVGDLMRSIT 893 (1096)
T ss_pred eeeeeeccceeehhhh-CCeEEEec--CcEEEEEEcccccee-----hhhhccc-CCeEEEEEEecCcEEEEeeccceEE
Confidence 322 23445554432 47777654 467999999987543 2223333 6778888888999999983 33 4
Q ss_pred EEEEECCCce
Q 001790 986 LAIYDASKME 995 (1012)
Q Consensus 986 i~vwd~~~~~ 995 (1012)
+.-|+...|.
T Consensus 894 ll~y~~~eg~ 903 (1096)
T KOG1897|consen 894 LLQYKGDEGN 903 (1096)
T ss_pred EEEEeccCCc
Confidence 5556655533
No 332
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.26 E-value=0.00079 Score=76.82 Aligned_cols=127 Identities=13% Similarity=0.131 Sum_probs=75.9
Q ss_pred EEEEEc-CCcEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEE-----------------EeCCCeEEEEEccCCe
Q 001790 845 YVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI-----------------GTEDSTIHIYNVRVDE 906 (1012)
Q Consensus 845 ~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las-----------------~~~dg~v~iwd~~~~~ 906 (1012)
.+++++ +|.+..+|.++|+.+....... ..++.+| + ...+. ...+|.|.-.|+.+|+
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~-~-~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~ 377 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP-G-LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK 377 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC-c-eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCc
Confidence 456666 8999999999999887654211 1133333 1 12111 1246788888999998
Q ss_pred EeEEecccC--------CCe--EEEEEcCCCCEEEEEeCCCcEEEEeCCCCCccccEEEecCCCCCCCCceEEEEcCCCC
Q 001790 907 VKSKLKGHQ--------KRI--TGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQV 976 (1012)
Q Consensus 907 ~~~~~~~h~--------~~V--~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~ 976 (1012)
.+-+..... .+. ..+.. .+..|+.++.||.|+.+|.++|+.+-...+ ...- ...=+.|..+|+
T Consensus 378 ~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~~--~~~~---~a~P~~~~~~g~ 450 (488)
T cd00216 378 VVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFRT--PSGI---QATPMTYEVNGK 450 (488)
T ss_pred EeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEEC--CCCc---eEcCEEEEeCCE
Confidence 877654321 111 11222 467888899999999999999997654432 2111 112233555776
Q ss_pred EEEEEeC
Q 001790 977 RMLVVHE 983 (1012)
Q Consensus 977 ~l~~~~d 983 (1012)
..+...+
T Consensus 451 ~yv~~~~ 457 (488)
T cd00216 451 QYVGVMV 457 (488)
T ss_pred EEEEEEe
Confidence 6555533
No 333
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=2.6e-05 Score=86.29 Aligned_cols=182 Identities=16% Similarity=0.162 Sum_probs=127.6
Q ss_pred CCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001790 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1012)
Q Consensus 343 h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 422 (1012)
..+.++|++++. + +++-|+.+|.|++.+.... . .+ ...|+.. .-+|.+++
T Consensus 38 ~~D~is~~av~~--~-~~~~GtH~g~v~~~~~~~~-~-~~-------------------~~~~s~~------~~~Gey~a 87 (846)
T KOG2066|consen 38 QNDAISCCAVHD--K-FFALGTHRGAVYLTTCQGN-P-KT-------------------NFDHSSS------ILEGEYVA 87 (846)
T ss_pred hhhHHHHHHhhc--c-eeeeccccceEEEEecCCc-c-cc-------------------ccccccc------ccCCceEE
Confidence 456889999874 3 7999999999999987532 1 10 1124333 55899999
Q ss_pred EEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCC-----CCceEEEEEcCCCcEEEEe--CCCcce-eeecCCc
Q 001790 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP-----NKLLCVVTCGDDKLIKVWE--LSGRKL-FNFEGHE 494 (1012)
Q Consensus 423 s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~-----~~~~~l~s~~~d~~v~vwd--~~~~~~-~~~~~h~ 494 (1012)
+|+.||+|.|-.+-+++...+ + .-..++.+++++|+ .+ .+++||.-| +.++. .-|... ..+....
T Consensus 88 sCS~DGkv~I~sl~~~~~~~~---~-df~rpiksial~Pd~~~~~sk--~fv~GG~ag-lvL~er~wlgnk~~v~l~~~e 160 (846)
T KOG2066|consen 88 SCSDDGKVVIGSLFTDDEITQ---Y-DFKRPIKSIALHPDFSRQQSK--QFVSGGMAG-LVLSERNWLGNKDSVVLSEGE 160 (846)
T ss_pred EecCCCcEEEeeccCCcccee---E-ecCCcceeEEeccchhhhhhh--heeecCcce-EEEehhhhhcCccceeeecCc
Confidence 999999999999988775542 2 34668999999998 34 689999888 87776 223222 2456677
Q ss_pred cCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCC------cEEEEEEccCCCeEEEeeecCCCCCcEEE
Q 001790 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH------WCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1012)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~------~v~~~~~s~~~~~l~~~~~~~~~~~~i~l 568 (1012)
++|.++.|. |.+++-++.+| |++||..+......+..... .-..+.|.++.+.++.- ..+|++
T Consensus 161 G~I~~i~W~----g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW------~d~v~i 229 (846)
T KOG2066|consen 161 GPIHSIKWR----GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGW------GDSVKI 229 (846)
T ss_pred cceEEEEec----CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEec------CCeEEE
Confidence 899999983 35777777665 89999988776665544333 23467787776555433 345777
Q ss_pred EeCC
Q 001790 569 WNES 572 (1012)
Q Consensus 569 wd~~ 572 (1012)
..++
T Consensus 230 ~~I~ 233 (846)
T KOG2066|consen 230 CSIK 233 (846)
T ss_pred EEEe
Confidence 7766
No 334
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.00031 Score=78.64 Aligned_cols=117 Identities=12% Similarity=0.108 Sum_probs=83.2
Q ss_pred CCCCEeEEEEeeCCCEEEEEc-CCcEEEEEcC----CCeEEEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccC
Q 001790 830 LEEAVPCIALSKNDSYVMSAT-GGKISLFNMM----TFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 904 (1012)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~s-dg~i~lwd~~----~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~ 904 (1012)
...++.++++|.+-+.+|+|- +|.|..+.-+ .|...........+|+.+++.. ++..++-+..-..|.+|.+..
T Consensus 124 ~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~-d~~s~lFv~Tt~~V~~y~l~g 202 (933)
T KOG2114|consen 124 NPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS-DGKSVLFVATTEQVMLYSLSG 202 (933)
T ss_pred CCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec-CCceeEEEEecceeEEEEecC
Confidence 577899999999999999998 8999888432 1121122223456899999998 676634444566799999984
Q ss_pred Ce-EeEEecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 001790 905 DE-VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWE 948 (1012)
Q Consensus 905 ~~-~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~ 948 (1012)
.. ....+..|...+.|.+|++....+++++ +..+.+|+.+...
T Consensus 203 r~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 203 RTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRG 246 (933)
T ss_pred CCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcc
Confidence 44 2455778888999999997655455555 3469999988644
No 335
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=98.25 E-value=1.5e-06 Score=52.51 Aligned_cols=27 Identities=37% Similarity=0.572 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHhc
Q 001790 6 RELVFLILQFLEEEKFKESVHKLEKES 32 (1012)
Q Consensus 6 ~e~~rli~q~L~~~g~~~s~~~L~~Es 32 (1012)
+++++||++||.++||.+||++|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 589999999999999999999999996
No 336
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=0.00021 Score=80.04 Aligned_cols=203 Identities=13% Similarity=0.161 Sum_probs=131.2
Q ss_pred EEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcc-eEEEEEccCCCEEEEEECCC-
Q 001790 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPIS-VSRVAWSPDGNYVGVAFTKH- 428 (1012)
Q Consensus 351 ~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~v~~spdg~~las~~~d~- 428 (1012)
+|++.+. .+|.|+.+|.|.+.+-. -+.+.. +..+... |..+-.-.+..+|++.+.|+
T Consensus 30 c~~s~~~-~vvigt~~G~V~~Ln~s-~~~~~~-------------------fqa~~~siv~~L~~~~~~~~L~sv~Ed~~ 88 (933)
T KOG2114|consen 30 CCSSSTG-SVVIGTADGRVVILNSS-FQLIRG-------------------FQAYEQSIVQFLYILNKQNFLFSVGEDEQ 88 (933)
T ss_pred EEcCCCc-eEEEeeccccEEEeccc-ceeeeh-------------------heecchhhhhHhhcccCceEEEEEeecCC
Confidence 3566666 69999999998887632 111111 3445445 44443333446777776654
Q ss_pred ----eEEEEeecCCC------cceeeeeeec-----cccCeEEEEEeCCCCceEEEEEcCCCcEEEEe---C--CCccee
Q 001790 429 ----LIQLYSYAGSN------DLRQHSQIDA-----HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE---L--SGRKLF 488 (1012)
Q Consensus 429 ----~v~vwd~~~~~------~~~~~~~l~~-----h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd---~--~~~~~~ 488 (1012)
.|+||+++..+ ++.... +.+ ...++.+++.+.+-+ .+|.|-.+|.|..+. . .|....
T Consensus 89 ~np~llkiw~lek~~~n~sP~c~~~~r-i~~~~np~~~~p~s~l~Vs~~l~--~Iv~Gf~nG~V~~~~GDi~RDrgsr~~ 165 (933)
T KOG2114|consen 89 GNPVLLKIWDLEKVDKNNSPQCLYEHR-IFTIKNPTNPSPASSLAVSEDLK--TIVCGFTNGLVICYKGDILRDRGSRQD 165 (933)
T ss_pred CCceEEEEecccccCCCCCcceeeeee-eeccCCCCCCCcceEEEEEcccc--EEEEEecCcEEEEEcCcchhcccccee
Confidence 49999987432 221111 112 356788999999877 899999999999886 1 222222
Q ss_pred eecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCce-eeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEE
Q 001790 489 NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR-VDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1012)
Q Consensus 489 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 567 (1012)
-......+|+++++..+ +..++-+.....|.+|.+....+. ..+..++....|.++++....+++++ ...+.
T Consensus 166 ~~~~~~~pITgL~~~~d--~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-----~e~l~ 238 (933)
T KOG2114|consen 166 YSHRGKEPITGLALRSD--GKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-----SEFLY 238 (933)
T ss_pred eeccCCCCceeeEEecC--CceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-----CceEE
Confidence 23345678999998654 344333344567889998855433 34677788899999988777677765 67899
Q ss_pred EEeCCCCeeeeeec-CCC
Q 001790 568 EWNESEGTIKRTYA-GFR 584 (1012)
Q Consensus 568 lwd~~~~~~~~~~~-~~~ 584 (1012)
+||.........|. ++.
T Consensus 239 fY~sd~~~~cfaf~~g~k 256 (933)
T KOG2114|consen 239 FYDSDGRGPCFAFEVGEK 256 (933)
T ss_pred EEcCCCcceeeeecCCCe
Confidence 99988777666666 443
No 337
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.22 E-value=0.0019 Score=73.82 Aligned_cols=109 Identities=14% Similarity=0.078 Sum_probs=69.4
Q ss_pred EEEEEecCCeEEEEEcCCCCceeeecCCCC------cEE--EEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeec
Q 001790 510 FIFSTAIDGKIKAWLYDTMGSRVDYDAPGH------WCT--TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1012)
Q Consensus 510 ~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~------~v~--~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~ 581 (1012)
.++.++.++.+...|..+++....+..... .+. .+.+. ++..++.+. .++.|+-+|.++|+.+-.+.
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~----~~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGT----FDGRLVALDAETGKQVWKFG 137 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEec----CCCeEEEEECCCCCEeeeec
Confidence 566777789999999988888776654332 000 11111 224566655 48899999999999987776
Q ss_pred CCCCC-----cceEEEEecCCCEEEEEe---------CCCcEEEEeCCCCeeEEEEec
Q 001790 582 GFRKK-----SNGVVQFDTTQNHFLAVG---------EDSQIKFWDMDNVNILTSTDA 625 (1012)
Q Consensus 582 ~~~~~-----~v~~~~~s~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~ 625 (1012)
..... ......+. +..++.++ .+|.++.+|..+|+.+.....
T Consensus 138 ~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 138 NNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred CCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 43220 01112222 24555554 368899999999998887755
No 338
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=4.3e-05 Score=84.70 Aligned_cols=185 Identities=11% Similarity=0.134 Sum_probs=123.6
Q ss_pred eEEEEEecCcceEEEeeccCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEE
Q 001790 767 VVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYV 846 (1012)
Q Consensus 767 i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 846 (1012)
+.+.+++ ++.++-|..+|.+++++.+.... ..+. |... ..+|.++
T Consensus 42 is~~av~--~~~~~~GtH~g~v~~~~~~~~~~------------------------~~~~---~s~~------~~~Gey~ 86 (846)
T KOG2066|consen 42 ISCCAVH--DKFFALGTHRGAVYLTTCQGNPK------------------------TNFD---HSSS------ILEGEYV 86 (846)
T ss_pred HHHHHhh--cceeeeccccceEEEEecCCccc------------------------cccc---cccc------ccCCceE
Confidence 3444443 56788899999999987532100 0000 1111 4689999
Q ss_pred EEEc-CCcEEEEEcCCCeEEEEEcCCCCCeeEEEEecC----CCcEEEEEeCCCeEEEEEccC--CeEeEEecccCCCeE
Q 001790 847 MSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQ----DNNIIAIGTEDSTIHIYNVRV--DEVKSKLKGHQKRIT 919 (1012)
Q Consensus 847 a~~s-dg~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~----d~~~las~~~dg~v~iwd~~~--~~~~~~~~~h~~~V~ 919 (1012)
++|+ ||+|.|..+-+.+...++.- ..++.+++++|+ ..+.+++|+.-| +.++.-.= .+.-..+..-.|+|.
T Consensus 87 asCS~DGkv~I~sl~~~~~~~~~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~ 164 (846)
T KOG2066|consen 87 ASCSDDGKVVIGSLFTDDEITQYDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIH 164 (846)
T ss_pred EEecCCCcEEEeeccCCccceeEec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceE
Confidence 9999 89999999988887776653 457899999992 256788899888 88876431 111113555678999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCCccccEEEecCCCCCCCCceEEEEcCCCCEEEEEeCCeEEEEECC
Q 001790 920 GLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDAS 992 (1012)
Q Consensus 920 ~l~~spdg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~d~~i~vwd~~ 992 (1012)
++.|. |+++|-++.+| |+|||+.+++.+..+.......+...--..+.|.++.+ |++|=..+|.|..+.
T Consensus 165 ~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 165 SIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK 233 (846)
T ss_pred EEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence 99997 78999888777 99999999876544332222221112335678876664 666745567777666
No 339
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=0.00014 Score=73.98 Aligned_cols=245 Identities=13% Similarity=0.131 Sum_probs=136.9
Q ss_pred ecCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCC-
Q 001790 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN- 419 (1012)
Q Consensus 341 ~~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~- 419 (1012)
..|+..|..++|||...-++..++.+..|.|.|+++...+.+ +..| ..+.+++|.-|..
T Consensus 190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss-------------------y~a~-~~~wSC~wDlde~h 249 (463)
T KOG1645|consen 190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS-------------------YIAY-NQIWSCCWDLDERH 249 (463)
T ss_pred cccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh-------------------eecc-CCceeeeeccCCcc
Confidence 348889999999998876788999999999999998776643 3335 7899999998665
Q ss_pred EEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEe------CCCCceEEEEEcCCCcEEEEeC---CCcceeee
Q 001790 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFA------YPNKLLCVVTCGDDKLIKVWEL---SGRKLFNF 490 (1012)
Q Consensus 420 ~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s------~~~~~~~l~s~~~d~~v~vwd~---~~~~~~~~ 490 (1012)
+|..|..+|.|.|||+...+.......-.-...+|..++.- +.|. +++..+. .+..|+. .+.....+
T Consensus 250 ~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg--lLv~~lt--~l~f~ei~~s~~~~p~vl 325 (463)
T KOG1645|consen 250 VIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG--LLVFALT--VLQFYEIVFSAECLPCVL 325 (463)
T ss_pred eeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc--eEEeeeh--hhhhhhhhccccCCCccc
Confidence 55566788999999998655433211111123344444432 2344 3443332 2456661 22222222
Q ss_pred c-CCccCEEEEeccccCCceEEEEEecCC------eEEE-EEcCCCCceeee-cCC-CC------cEEEEEEccCCCeEE
Q 001790 491 E-GHEAPVYSICPHHKENIQFIFSTAIDG------KIKA-WLYDTMGSRVDY-DAP-GH------WCTTMLYSADGSRLF 554 (1012)
Q Consensus 491 ~-~h~~~v~~~~~~~~~~~~~l~s~~~dg------~i~~-wd~~~~~~~~~~-~~~-~~------~v~~~~~s~~~~~l~ 554 (1012)
. +..+...++..++..+ ..|++.-.+. .+-. -|..++..+... ..+ +. .-..+.-.++.++++
T Consensus 326 ele~pG~cismqy~~~sn-h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv 404 (463)
T KOG1645|consen 326 ELEPPGICISMQYHGVSN-HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIV 404 (463)
T ss_pred ccCCCcceeeeeecCccc-eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEE
Confidence 2 2244455555544332 3444432210 0000 011111111110 001 11 112222345666666
Q ss_pred EeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEec-CCCEEEEEeCCCcEEEEeCC
Q 001790 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMD 615 (1012)
Q Consensus 555 ~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~ 615 (1012)
..+. ..+.+.+||..+.+.++++.... ++..++... +++-++..-.|..++||..+
T Consensus 405 ~~gd---~tn~lil~D~~s~evvQ~l~~~e--pv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 405 VVGD---STNELILQDPHSFEVVQTLALSE--PVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred EecC---CcceeEEeccchhheeeecccCc--ceeecceeecCCcchhhheecceEEEEecC
Confidence 5542 57889999999999999988653 555554432 34333444445688888654
No 340
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.13 E-value=0.0067 Score=63.88 Aligned_cols=103 Identities=15% Similarity=0.130 Sum_probs=55.4
Q ss_pred EcCCCCceeeecCCCCcEEE-----EEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCC
Q 001790 524 LYDTMGSRVDYDAPGHWCTT-----MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598 (1012)
Q Consensus 524 d~~~~~~~~~~~~~~~~v~~-----~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 598 (1012)
|..++..+..+......... =+|.+||+.|+.++ +.++...+++.|+.+++..+.-.+... ......++++++
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s-~~dg~~nly~lDL~t~~i~QLTdg~g~-~~~g~~~s~~~~ 93 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFAS-DFDGNRNLYLLDLATGEITQLTDGPGD-NTFGGFLSPDDR 93 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE--TTSS-EEEEEETTT-EEEE---SS-B--TTT-EE-TTSS
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEe-ccCCCcceEEEEcccCEEEECccCCCC-CccceEEecCCC
Confidence 44455555554444332222 25788999888866 355788899999999998877665433 222466778888
Q ss_pred EEEEEeCCCcEEEEeCCCCeeEEEEecCCC
Q 001790 599 HFLAVGEDSQIKFWDMDNVNILTSTDAEGG 628 (1012)
Q Consensus 599 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 628 (1012)
.++-......|+-.|+.+.+....+..+..
T Consensus 94 ~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~ 123 (386)
T PF14583_consen 94 ALYYVKNGRSLRRVDLDTLEERVVYEVPDD 123 (386)
T ss_dssp EEEEEETTTEEEEEETTT--EEEEEE--TT
T ss_pred eEEEEECCCeEEEEECCcCcEEEEEECCcc
Confidence 887766667899999999887666665543
No 341
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.06 E-value=8.8e-05 Score=83.19 Aligned_cols=183 Identities=13% Similarity=0.137 Sum_probs=136.1
Q ss_pred EEEEEcCCCcEEEEe-CCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEE
Q 001790 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (1012)
Q Consensus 467 ~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 545 (1012)
.++-|+-...+..+| .+++..+...-..+.|.-|+- +++++.+|...|+|.+-|.++.+...++..|.+.+..+.
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEe----cCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 577777778888889 556555555444445766653 557999999999999999999999999999999887654
Q ss_pred EccCCCeEEEeeecCC-----CCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCC-CEEEEEeCCCcEEEEe---CCC
Q 001790 546 YSADGSRLFSCGTSKD-----GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWD---MDN 616 (1012)
Q Consensus 546 ~s~~~~~l~~~~~~~~-----~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd---~~~ 616 (1012)
-.|+.|++||.+.. -|..|.+||++..+.+.-+.-+.+ ...+.|.|.- ..+++++..|...+-| +.+
T Consensus 225 --v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~--P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 225 --VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG--PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred --ccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccC--chhhhhcccccceEEEEecccceeeccccccCC
Confidence 57889999987532 366789999998877666555443 2446777754 5778888999999998 333
Q ss_pred CeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEc
Q 001790 617 VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1012)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~ 658 (1012)
.. ......+.....+..+.+|++|..+|.|..+|.|.+|.-
T Consensus 301 P~-~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 301 PP-AGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred Cc-cceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 31 122222222335899999999999999999999999983
No 342
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.06 E-value=0.0018 Score=70.38 Aligned_cols=112 Identities=15% Similarity=0.206 Sum_probs=80.8
Q ss_pred CCEeEEEEee-CCCEEEEE----c-CCc----EEEEEcCCCeEEEE---EcCCCCCeeEEEEecCCCcEEEEEeCCCeEE
Q 001790 832 EAVPCIALSK-NDSYVMSA----T-GGK----ISLFNMMTFKVMTT---FMSPPPASTFLAFHPQDNNIIAIGTEDSTIH 898 (1012)
Q Consensus 832 ~~v~~~~~s~-dg~~la~~----s-dg~----i~lwd~~~~~~~~~---~~~~~~~i~~l~~sp~d~~~las~~~dg~v~ 898 (1012)
....++.||. +...+.+. + +|. -.+|++...+..+. -......+.+++++| +...|+.|+.||+|.
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSII 284 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEE
Confidence 3446777776 33444333 2 343 56777765543321 113566899999999 889999999999999
Q ss_pred EEEccCCeEeEEecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001790 899 IYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT 946 (1012)
Q Consensus 899 iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~ 946 (1012)
+||...+... +..+.-..+.++|+|+|..+++|+.-|.+.+||+.-
T Consensus 285 LyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 285 LYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 9998776332 223445678899999999999999999999999864
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.06 E-value=0.0013 Score=72.59 Aligned_cols=224 Identities=12% Similarity=0.101 Sum_probs=119.2
Q ss_pred ccCCCcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe
Q 001790 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1012)
Q Consensus 402 ~~~h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd 481 (1012)
+.........+.++|+|++++++ .||.-.|+.... .+. ...+.-...+|.+.++ +|+-...++|.++.
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~---~r~-----k~~G~g~~~vw~~~n~---yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALA---WRN-----KAFGSGLSFVWSSRNR---YAVLESSSTIKIYK 95 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTT---TEE-----EEEEE-SEEEE-TSSE---EEEE-TTS-EEEEE
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccC---Ccc-----cccCceeEEEEecCcc---EEEEECCCeEEEEE
Confidence 44455567899999999999995 567677776322 221 1234456788998665 66666688999986
Q ss_pred -CCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecC
Q 001790 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1012)
Q Consensus 482 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 560 (1012)
.++.....+.-. ..+..+-. |.+|...+ ++.|.+||+.+++....+... +|..+.|+++|.+++..+
T Consensus 96 n~~~~~~k~i~~~-~~~~~If~-----G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t--- 163 (443)
T PF04053_consen 96 NFKNEVVKSIKLP-FSVEKIFG-----GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT--- 163 (443)
T ss_dssp TTEE-TT-----S-S-EEEEE------SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE----
T ss_pred cCccccceEEcCC-cccceEEc-----CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe---
Confidence 555543344321 23444421 45565554 458999999998888777654 389999999999999987
Q ss_pred CCCCcEEEEeCCCC---------e--eeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCC
Q 001790 561 DGDSFLVEWNESEG---------T--IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629 (1012)
Q Consensus 561 ~~~~~i~lwd~~~~---------~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (1012)
+..+.+++.... - ....+... ...|.+.+|..+ .++-.+.. .++. +-+|+.-.......
T Consensus 164 --~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~-~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld~-- 233 (443)
T PF04053_consen 164 --KDSIYILKYNLEAVAAIPEEGVEDAFELIHEI-SERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLDK-- 233 (443)
T ss_dssp --S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE--S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-SS--
T ss_pred --CCeEEEEEecchhcccccccCchhceEEEEEe-cceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcCC--
Confidence 556777664332 0 11111111 226777888765 44444444 6665 33444332222211
Q ss_pred CCcceeEeecCCCEEEEEECCCcEEEEEccC
Q 001790 630 PNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1012)
Q Consensus 630 ~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~ 660 (1012)
++.-+.+.+..+.+.....++.+..+.+..
T Consensus 234 -~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 234 -PLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp ---EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred -ceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 567777888778888888888888887654
No 344
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=98.02 E-value=8.5e-06 Score=53.75 Aligned_cols=32 Identities=38% Similarity=0.546 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHHhhcCHHHHHHHHHHhcCCC
Q 001790 4 LSRELVFLILQFLEEEKFKESVHKLEKESGFF 35 (1012)
Q Consensus 4 ~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~ 35 (1012)
.++++.++|+|||.++||.+|+++|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 36789999999999999999999999999974
No 345
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.02 E-value=5.8e-05 Score=81.54 Aligned_cols=84 Identities=27% Similarity=0.390 Sum_probs=69.0
Q ss_pred CCccceEeecCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEE
Q 001790 333 LPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1012)
Q Consensus 333 ~~~~~~~~~~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 412 (1012)
+....+..+..++.|.|++++|+.. .|+.|+.||+|++||...+.... ..+.-.++.+
T Consensus 248 lqrvsvtsipL~s~v~~ca~sp~E~-kLvlGC~DgSiiLyD~~~~~t~~---------------------~ka~~~P~~i 305 (545)
T PF11768_consen 248 LQRVSVTSIPLPSQVICCARSPSED-KLVLGCEDGSIILYDTTRGVTLL---------------------AKAEFIPTLI 305 (545)
T ss_pred eeEEEEEEEecCCcceEEecCcccc-eEEEEecCCeEEEEEcCCCeeee---------------------eeecccceEE
Confidence 3344556677999999999999999 58899999999999987764332 1234567889
Q ss_pred EEccCCCEEEEEECCCeEEEEeecCC
Q 001790 413 AWSPDGNYVGVAFTKHLIQLYSYAGS 438 (1012)
Q Consensus 413 ~~spdg~~las~~~d~~v~vwd~~~~ 438 (1012)
+|+|+|..+++|+..|.+.+||+.-+
T Consensus 306 aWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 306 AWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEcCCCcEEEEEcCCceEEEEEeecC
Confidence 99999999999999999999998753
No 346
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.01 E-value=0.00033 Score=76.92 Aligned_cols=107 Identities=12% Similarity=0.071 Sum_probs=68.9
Q ss_pred CceEEEEEecCcceEEEeeccCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCC
Q 001790 765 SKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS 844 (1012)
Q Consensus 765 ~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 844 (1012)
+.+....++++...+++|+..|.|.++-+.. .+.+.-. .....-. .|...|++++||+|+.
T Consensus 77 ~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~-~~p~~~~----------------~~t~~d~--~~~~rVTal~Ws~~~~ 137 (726)
T KOG3621|consen 77 GITCVRSVSSVEYLVAAGTASGRVSVFQLNK-ELPRDLD----------------YVTPCDK--SHKCRVTALEWSKNGM 137 (726)
T ss_pred ceEEEEEecchhHhhhhhcCCceEEeehhhc-cCCCcce----------------eeccccc--cCCceEEEEEeccccc
Confidence 3456667788888888888889999886654 1111100 0000011 2788999999999999
Q ss_pred EEEEEc-CCcEEEEEcCCC----eEEEEEcCCCCCeeEEEEecCCCcEEEEEe
Q 001790 845 YVMSAT-GGKISLFNMMTF----KVMTTFMSPPPASTFLAFHPQDNNIIAIGT 892 (1012)
Q Consensus 845 ~la~~s-dg~i~lwd~~~~----~~~~~~~~~~~~i~~l~~sp~d~~~las~~ 892 (1012)
.+.+|. .|+|.+-.+.+. -..+.+......|-.+.+. ++.+|++..
T Consensus 138 k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl 188 (726)
T KOG3621|consen 138 KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTL 188 (726)
T ss_pred EEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHhhh
Confidence 999998 799988888762 1122333345677777776 345555433
No 347
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.00 E-value=0.019 Score=60.65 Aligned_cols=278 Identities=14% Similarity=0.127 Sum_probs=132.1
Q ss_pred EEecCCCcEEEEecCCCe--EEEEEccCCceecccccccccccccCccccceeccCCC-cceEEEEEccCCCEEEEEECC
Q 001790 351 DFHPSHQTLLLVGSSNGE--ITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP-ISVSRVAWSPDGNYVGVAFTK 427 (1012)
Q Consensus 351 ~~spdg~~llasg~~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~spdg~~las~~~d 427 (1012)
+|.+||+++|.++..||. +.+-|+.+++... |..+. .......++|+++.++.....
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------LTdg~g~~~~g~~~s~~~~~~~Yv~~~ 101 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------LTDGPGDNTFGGFLSPDDRALYYVKNG 101 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEEETT
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------CccCCCCCccceEEecCCCeEEEEECC
Confidence 578999988888877774 5555667766542 22222 223346778999988877677
Q ss_pred CeEEEEeecCCCcceeeeeeeccccCeEEEEEe--CCCCceEEEEEc---CC-------------------CcEEEEe-C
Q 001790 428 HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFA--YPNKLLCVVTCG---DD-------------------KLIKVWE-L 482 (1012)
Q Consensus 428 ~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s--~~~~~~~l~s~~---~d-------------------~~v~vwd-~ 482 (1012)
..|+-.|+++.+... + +......+-...|. .|+. .++..- .| ..|.--| .
T Consensus 102 ~~l~~vdL~T~e~~~-v--y~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~ 176 (386)
T PF14583_consen 102 RSLRRVDLDTLEERV-V--YEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK 176 (386)
T ss_dssp TEEEEEETTT--EEE-E--EE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETT
T ss_pred CeEEEEECCcCcEEE-E--EECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECC
Confidence 788888999876432 2 33344444445554 3444 333221 11 1222233 3
Q ss_pred CCcceeeecCCccCEEEEeccccCCceEEEEEec---CCe-EEEEEcCCCCcee-eec--CCCCcEEEEEEccCCCeEEE
Q 001790 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI---DGK-IKAWLYDTMGSRV-DYD--APGHWCTTMLYSADGSRLFS 555 (1012)
Q Consensus 483 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~-i~~wd~~~~~~~~-~~~--~~~~~v~~~~~s~~~~~l~~ 555 (1012)
+|+. ..+..-...+..+.|+|..+ .+|.-|-+ +.. -|+|-+++..... .+. .....+..=-|.|||..+..
T Consensus 177 tG~~-~~v~~~~~wlgH~~fsP~dp-~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 177 TGER-KVVFEDTDWLGHVQFSPTDP-TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp T--E-EEEEEESS-EEEEEEETTEE-EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred CCce-eEEEecCccccCcccCCCCC-CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEE
Confidence 3332 33322344566677777643 44444432 221 3677665533322 111 22335666679999998876
Q ss_pred eee-cCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCC----------------CcEEEEeCCCCe
Q 001790 556 CGT-SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED----------------SQIKFWDMDNVN 618 (1012)
Q Consensus 556 ~~~-~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----------------g~i~iwd~~~~~ 618 (1012)
-+. .+..+..|.-+|..+++........ ...-...++|+++++-=+.| .-|++++.+.+.
T Consensus 255 ~~~~~~~~~~~i~~~d~~t~~~~~~~~~p---~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~ 331 (386)
T PF14583_consen 255 DSYTPGGQDFWIAGYDPDTGERRRLMEMP---WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGR 331 (386)
T ss_dssp EEEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTE
T ss_pred EeecCCCCceEEEeeCCCCCCceEEEeCC---ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCc
Confidence 543 2334567888888887654433321 22335567888877663333 256778887766
Q ss_pred eEEEEecC-------CC-CCCcceeEeecCCCEEEEEEC-CCcEEEEEc
Q 001790 619 ILTSTDAE-------GG-LPNLPRLRFSKEGNLLAVTTA-DNGFKILAN 658 (1012)
Q Consensus 619 ~~~~~~~~-------~~-~~~v~~v~~s~~g~~l~~~~~-dg~i~iwd~ 658 (1012)
........ ++ ...=....|+|||++++..++ .|...||-+
T Consensus 332 ~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 332 FRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp EEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred eeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 54322210 00 001146789999999887665 566666543
No 348
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.98 E-value=0.034 Score=63.76 Aligned_cols=110 Identities=11% Similarity=0.039 Sum_probs=66.5
Q ss_pred EEEEEecCCeEEEEEcCCCCceeeecCCCC-cEE----------EEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeee
Q 001790 510 FIFSTAIDGKIKAWLYDTMGSRVDYDAPGH-WCT----------TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1012)
Q Consensus 510 ~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-~v~----------~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~ 578 (1012)
.++.++.++.|.-.|.++++.+..+..... .+. .+++ .+..+++++ .++.|.-.|.++|+.+-
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t----~dg~l~ALDa~TGk~~W 144 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGT----LDARLVALDAKTGKVVW 144 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEc----CCCEEEEEECCCCCEEe
Confidence 566677778888888888888776654321 111 1122 123455554 38889999999999887
Q ss_pred eecCCCCCcceEEEEec--CCCEEEEEeC------CCcEEEEeCCCCeeEEEEec
Q 001790 579 TYAGFRKKSNGVVQFDT--TQNHFLAVGE------DSQIKFWDMDNVNILTSTDA 625 (1012)
Q Consensus 579 ~~~~~~~~~v~~~~~s~--~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~ 625 (1012)
.........-..+.-+| .+..++++.. +|.|+.+|.++|+.+-....
T Consensus 145 ~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 145 SKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred ecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 66532110000111111 1345555542 68999999999998877654
No 349
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=97.93 E-value=7.1e-06 Score=62.18 Aligned_cols=52 Identities=38% Similarity=0.552 Sum_probs=43.4
Q ss_pred HHHHHHHhhccCHHHHHHHHcCCCCCCCcccchhHHHHHHHhHHhHhhccCCH
Q 001790 38 MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDK 90 (1012)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~ell~~~~~ 90 (1012)
+..++++|+.|+|+.|+..+...........+ .+.|.|++|+|+||++.++.
T Consensus 5 ~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 5 RKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence 67899999999999999999988655433333 49999999999999998764
No 350
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.92 E-value=0.0074 Score=67.98 Aligned_cols=252 Identities=13% Similarity=0.075 Sum_probs=134.1
Q ss_pred ceEEEEEecCCCcEEEEecCCC----eEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE
Q 001790 346 TVISMDFHPSHQTLLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1012)
Q Consensus 346 ~V~~~~~spdg~~llasg~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 421 (1012)
.+..+++||||++++++-+..| .++++|+.+|+.+.. . +.. .....+.|.+|++.|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~-----------------i~~--~~~~~~~W~~d~~~~ 184 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-G-----------------IEN--PKFSSVSWSDDGKGF 184 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-E-----------------EEE--EESEEEEECTTSSEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-c-----------------ccc--cccceEEEeCCCCEE
Confidence 4557889999996555544444 699999999976542 1 111 112239999999988
Q ss_pred EEEECCC-----------eEEEEeecCCCcceeeeeeeccccC--eEEEEEeCCCCceEEEEEcCC--CcEEEEe-CCC-
Q 001790 422 GVAFTKH-----------LIQLYSYAGSNDLRQHSQIDAHVGA--VNDLAFAYPNKLLCVVTCGDD--KLIKVWE-LSG- 484 (1012)
Q Consensus 422 as~~~d~-----------~v~vwd~~~~~~~~~~~~l~~h~~~--v~~l~~s~~~~~~~l~s~~~d--~~v~vwd-~~~- 484 (1012)
+....+. .|+.|++.++..-.. ..+...... ...+..++|++.+++.+.+.. ..+.+.+ ..+
T Consensus 185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~-lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~ 263 (414)
T PF02897_consen 185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDE-LVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG 263 (414)
T ss_dssp EEEECSTTTSS-CCGCCEEEEEEETTS-GGG-E-EEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT
T ss_pred EEEEeCcccccccCCCCcEEEEEECCCChHhCe-eEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC
Confidence 7665433 377777766543211 123333332 568889999996333333322 3467777 332
Q ss_pred ---cceeeecCCccCEEEEeccccCCceEEEEEe---cCCeEEEEEcCCCCc---eeeecCCCCcEEEEEEccCCCeEEE
Q 001790 485 ---RKLFNFEGHEAPVYSICPHHKENIQFIFSTA---IDGKIKAWLYDTMGS---RVDYDAPGHWCTTMLYSADGSRLFS 555 (1012)
Q Consensus 485 ---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~---~dg~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~ 555 (1012)
.....+......+....-+. ++.+++... ..+.|...++..... ...+..+...+.-..+...+.+|+.
T Consensus 264 ~~~~~~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl 341 (414)
T PF02897_consen 264 SPDAKPKLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVL 341 (414)
T ss_dssp TSS-SEEEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEE
T ss_pred CCcCCcEEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEE
Confidence 23333333333333322222 223444332 235677777776653 2234444443333333445666665
Q ss_pred eeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEE--e--CCCcEEEEeCCCCeeEE
Q 001790 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV--G--EDSQIKFWDMDNVNILT 621 (1012)
Q Consensus 556 ~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~--~dg~i~iwd~~~~~~~~ 621 (1012)
... .+....|+++++..+.............+..+...++++.+... + .-+.++.||+.+++...
T Consensus 342 ~~~-~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 342 SYR-ENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp EEE-ETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred EEE-ECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 553 23466789999984555555444444345556555666554442 2 34678888988887543
No 351
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.92 E-value=0.00021 Score=80.32 Aligned_cols=181 Identities=7% Similarity=0.077 Sum_probs=127.2
Q ss_pred CCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCCcc
Q 001790 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1012)
Q Consensus 417 dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~ 495 (1012)
++..++.|+....+..+|+.+.+..+. ..-....|.-++. +++ ++.+|...|+|.+-| .+-+.++++..|++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~---~~v~a~~v~imR~--Nnr--~lf~G~t~G~V~LrD~~s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRT---TNVSASGVTIMRY--NNR--NLFCGDTRGTVFLRDPNSFETIHTFDAHSG 218 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeee---eeccCCceEEEEe--cCc--EEEeecccceEEeecCCcCceeeeeecccc
Confidence 455677787777888999998765552 2222333555544 566 799999999999999 88999999999999
Q ss_pred CEEEEeccccCCceEEEEEec---------CCeEEEEEcCCCCceeeecCCCCcEEEEEEccCC-CeEEEeeecCCCCCc
Q 001790 496 PVYSICPHHKENIQFIFSTAI---------DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG-SRLFSCGTSKDGDSF 565 (1012)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~---------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~ 565 (1012)
.|..+.. .|++|+++|. |.-|++||++..+...-+..+-++ .-+.|.|.- ..+++++ ..|.
T Consensus 219 siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S----~sGq 289 (1118)
T KOG1275|consen 219 SISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTS----QSGQ 289 (1118)
T ss_pred ceeeeec----cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEe----cccc
Confidence 9998876 3468888874 455899999987766555444432 445566643 2444444 3777
Q ss_pred EEEEeCC---CCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEe
Q 001790 566 LVEWNES---EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613 (1012)
Q Consensus 566 i~lwd~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 613 (1012)
..+-|.. +...-..+....+..+..+.++++++.++.|..+|.|.+|.
T Consensus 290 ~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 290 FQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 8887733 22111122222233488899999999999999999999997
No 352
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.92 E-value=0.0026 Score=63.94 Aligned_cols=190 Identities=12% Similarity=0.124 Sum_probs=109.8
Q ss_pred CCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEE
Q 001790 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1012)
Q Consensus 344 ~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 423 (1012)
...+..++|.|+...++|+....+.|...+. +|+.+...+ +.+ .+..-.|++..++.++++
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~-----------------l~g-~~D~EgI~y~g~~~~vl~ 81 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIP-----------------LDG-FGDYEGITYLGNGRYVLS 81 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE------------------SS--SSEEEEEE-STTEEEEE
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEe-----------------CCC-CCCceeEEEECCCEEEEE
Confidence 3479999999997778999888999988886 477664322 333 356788999888888777
Q ss_pred EECCCeEEEEeecCCCcc---eeee--eee---ccccCeEEEEEeCCCCceEEEEEcCCCcEEEEeCC----Ccceee--
Q 001790 424 AFTKHLIQLYSYAGSNDL---RQHS--QID---AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELS----GRKLFN-- 489 (1012)
Q Consensus 424 ~~~d~~v~vwd~~~~~~~---~~~~--~l~---~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd~~----~~~~~~-- 489 (1012)
.-.++.+.+.++...... .... .+. .+...+..++|.+.++. |+.+-+..-..++... +..+..
T Consensus 82 ~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~~~~~~~ 159 (248)
T PF06977_consen 82 EERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGFDLFVSD 159 (248)
T ss_dssp ETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred EcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCccceeecc
Confidence 667899999998443211 1111 111 34567999999999884 4445556556666622 222111
Q ss_pred ------ecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCC---------CcEEEEEEccCCCeEE
Q 001790 490 ------FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG---------HWCTTMLYSADGSRLF 554 (1012)
Q Consensus 490 ------~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~ 554 (1012)
.......+.++++++. .+.+++-......+..+| ..++....+.... ...-.|+|.++|+..+
T Consensus 160 ~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI 237 (248)
T PF06977_consen 160 DQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI 237 (248)
T ss_dssp -HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE
T ss_pred ccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE
Confidence 1123345788888876 557888888889999998 4445444333322 2578899999997666
Q ss_pred Ee
Q 001790 555 SC 556 (1012)
Q Consensus 555 ~~ 556 (1012)
+.
T Consensus 238 vs 239 (248)
T PF06977_consen 238 VS 239 (248)
T ss_dssp EE
T ss_pred Ec
Confidence 65
No 353
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.91 E-value=0.00036 Score=76.63 Aligned_cols=170 Identities=11% Similarity=0.094 Sum_probs=103.0
Q ss_pred CEeEEEEeeCCCEEEEEc--CCc--EEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEEeCCC---eEEEEEccCC
Q 001790 833 AVPCIALSKNDSYVMSAT--GGK--ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS---TIHIYNVRVD 905 (1012)
Q Consensus 833 ~v~~~~~s~dg~~la~~s--dg~--i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg---~v~iwd~~~~ 905 (1012)
.-...+|||||+.|+.+. ||. |.++|+.++.. ..+....+.-+.=.|+| ||+.++..++.+ .|.+++.+.+
T Consensus 239 ~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I~~~~~~g~ 316 (425)
T COG0823 239 NNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL-PRLTNGFGINTSPSWSP-DGSKIVFTSDRGGRPQIYLYDLEGS 316 (425)
T ss_pred ccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc-eecccCCccccCccCCC-CCCEEEEEeCCCCCcceEEECCCCC
Confidence 344568999999998775 554 88889877764 33544344344668999 888877766443 6777787766
Q ss_pred eEeEEecccCCCeEEEEEcCCCCEEEEEeCC-Cc--EEEEeCCCCCccccEEEecCCCCCCCCceEEEEcCCCCEEEEEe
Q 001790 906 EVKSKLKGHQKRITGLAFSTSLNILVSSGAD-AQ--LCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH 982 (1012)
Q Consensus 906 ~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D-g~--i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~ 982 (1012)
.. ..+....+.-..-.|||||++++..+.. |. |.+.|+.++...+. +. .. .......|.++|+.+...+
T Consensus 317 ~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~--lt---~~--~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 317 QV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRI--LT---ST--YLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred ce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEE--cc---cc--ccCCCCCcCCCCceEEEec
Confidence 54 3333233333377899999999987753 43 67777766653111 11 11 2335677899999888862
Q ss_pred --C-CeEEEEECCCceEEEeecC--CCeeEEEecC
Q 001790 983 --E-TQLAIYDASKMERIRQVGS--PHICSIIFCN 1012 (1012)
Q Consensus 983 --d-~~i~vwd~~~~~~~~~~~~--~~i~~~~f~p 1012 (1012)
. +.+..--..+++....+.. +.+..-+|+|
T Consensus 389 ~~~~~~~l~~~s~~g~~~~~~~~~~~~~~~p~w~~ 423 (425)
T COG0823 389 GQGGGSVLSLVSLDGRVSRPLPLADGDVRVPAWSP 423 (425)
T ss_pred cCCCCceEEEeeccceeEEEEeccCcceecccccC
Confidence 2 2333333345555544432 3454444543
No 354
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.89 E-value=5.8e-06 Score=88.73 Aligned_cols=203 Identities=13% Similarity=0.181 Sum_probs=131.3
Q ss_pred CceEEEEEecCCC-cEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc-CCCEEE
Q 001790 345 STVISMDFHPSHQ-TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYVG 422 (1012)
Q Consensus 345 ~~V~~~~~spdg~-~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~la 422 (1012)
..+.|++.+.+.+ -++++|..+|.|.+-.++....- ...+..+|....++++|++ |...||
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~LA 119 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNHLA 119 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHHHH
Confidence 3677777665443 58999999999999887643221 1233567888999999999 777888
Q ss_pred EEE----CCCeEEEEeecCCC--cceeeeeeec-cccCeEEEEEeCCCCceEEEEEcCCCcEEEEeCCCcceeeecCCcc
Q 001790 423 VAF----TKHLIQLYSYAGSN--DLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEA 495 (1012)
Q Consensus 423 s~~----~d~~v~vwd~~~~~--~~~~~~~l~~-h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~h~~ 495 (1012)
.|- .|..+.|||+.++- +... ..+.+ -.....+++|..+.+ ++.+|.....++++|..........-.+.
T Consensus 120 agldkhrnds~~~Iwdi~s~ltvPke~-~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~svnTk 196 (783)
T KOG1008|consen 120 AGLDKHRNDSSLKIWDINSLLTVPKES-PLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSVNTK 196 (783)
T ss_pred hhhhhhcccCCccceecccccCCCccc-cccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhhhhh
Confidence 773 45679999999862 1111 11222 334566889997777 78888888899999943333322222334
Q ss_pred CEEEEeccccCCceEEEEEecCCeEEEEE-cCCCCceeeecCC-----CCcEEEEEEccCCC-eEEEeeecCCCCCcEEE
Q 001790 496 PVYSICPHHKENIQFIFSTAIDGKIKAWL-YDTMGSRVDYDAP-----GHWCTTMLYSADGS-RLFSCGTSKDGDSFLVE 568 (1012)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~~wd-~~~~~~~~~~~~~-----~~~v~~~~~s~~~~-~l~~~~~~~~~~~~i~l 568 (1012)
.+..+.+.|- .+.++++-. ||.|.+|| ....+.......+ ...+..++|+|... .++++.. ..++|++
T Consensus 197 ~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~tIrl 271 (783)
T KOG1008|consen 197 YVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSITIRL 271 (783)
T ss_pred hcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc---CcceEEE
Confidence 4555666553 224665544 99999999 4333332222222 22588999999654 4445543 5788999
Q ss_pred EeCC
Q 001790 569 WNES 572 (1012)
Q Consensus 569 wd~~ 572 (1012)
+|+.
T Consensus 272 ydi~ 275 (783)
T KOG1008|consen 272 YDIC 275 (783)
T ss_pred eccc
Confidence 9875
No 355
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.83 E-value=0.0058 Score=66.53 Aligned_cols=252 Identities=15% Similarity=0.208 Sum_probs=131.3
Q ss_pred ceEEEEEecCCCcEEEEecCCCeEEEEEccCCceec------c------------cccccccccccCcc------cccee
Q 001790 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLV------S------------KPFKIWDMAACSLP------FQASI 401 (1012)
Q Consensus 346 ~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~------~------------~~~~~~~~~~~~~~------~~~~~ 401 (1012)
.|+++.|+++... |++|...|.|.||.+...+... . .+-++.|+.....+ .+...
T Consensus 3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 6899999999774 8889999999999886543321 0 01122233221111 12334
Q ss_pred ccCCCcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeec------cccCeEEEEEeC-----CC-CceEEE
Q 001790 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDA------HVGAVNDLAFAY-----PN-KLLCVV 469 (1012)
Q Consensus 402 ~~~h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~------h~~~v~~l~~s~-----~~-~~~~l~ 469 (1012)
+....++|++++.| |=.++|.|..+|.+.|.|+.+...+... .+.. ....|+++.|+- |+ ..++++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~-~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNE-NIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEE-EGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeec-cccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 55668999999998 5569999999999999999776544431 2222 344688888862 22 225788
Q ss_pred EEcCCCcEEEEe-C-C--Ccce----eeecCCccCEEEEeccccCCc-------------------eEEEEEecCCeEEE
Q 001790 470 TCGDDKLIKVWE-L-S--GRKL----FNFEGHEAPVYSICPHHKENI-------------------QFIFSTAIDGKIKA 522 (1012)
Q Consensus 470 s~~~d~~v~vwd-~-~--~~~~----~~~~~h~~~v~~~~~~~~~~~-------------------~~l~s~~~dg~i~~ 522 (1012)
.|...|.+.+|. . . |... .....+.++|..+..-...+| .-++....+..+++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 899999999998 3 2 2211 111245566666542211100 12344455788999
Q ss_pred EEcCCCCceeeecCCCCcEEEEEEc-----cCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCC---CcceEEEEe
Q 001790 523 WLYDTMGSRVDYDAPGHWCTTMLYS-----ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK---KSNGVVQFD 594 (1012)
Q Consensus 523 wd~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~---~~v~~~~~s 594 (1012)
+...+.+...........+..+.+- ..+..|++.. .+|.+++|.+..-+.+..+..... ..+...+++
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~----~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF----NNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE----TTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE----CCCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence 9887665554433222233444453 2444555554 599999999998888776665321 123445667
Q ss_pred cCCCEEEEEe
Q 001790 595 TTQNHFLAVG 604 (1012)
Q Consensus 595 ~~~~~l~~~~ 604 (1012)
++|..++..+
T Consensus 316 ~~Gdi~~~~g 325 (395)
T PF08596_consen 316 RNGDIFYWTG 325 (395)
T ss_dssp TTS-EEEE-S
T ss_pred CCCCEEEEeC
Confidence 7776555544
No 356
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.83 E-value=0.031 Score=61.96 Aligned_cols=138 Identities=17% Similarity=0.218 Sum_probs=84.7
Q ss_pred EEeeCCCEEEEEc-CCcEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeEEeccc-C
Q 001790 838 ALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGH-Q 915 (1012)
Q Consensus 838 ~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~~~~h-~ 915 (1012)
.++.+....+... ++.+.+.+....+. +. ..+++..|++|| +++++|.-..+|.+.+.+.+-.+.+..+... .
T Consensus 185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~ 259 (410)
T PF04841_consen 185 LLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSK 259 (410)
T ss_pred EeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECC-CCCEEEEEECCCCEEEEECcccceeEEeecCcC
Confidence 3445555444444 55566444332211 22 346899999999 9999999999999999987666666665533 3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCccccEEEecCCCCCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCce
Q 001790 916 KRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKME 995 (1012)
Q Consensus 916 ~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~d~~i~vwd~~~~~ 995 (1012)
.....+.|.-+...++.- ...|.+... .+ ..+.|.-++..+++..-..++|..-+.-+
T Consensus 260 ~~p~~~~WCG~dav~l~~--~~~l~lvg~--------------~~------~~~~~~~~~~~~l~~E~DG~riit~~~~~ 317 (410)
T PF04841_consen 260 SPPKQMAWCGNDAVVLSW--EDELLLVGP--------------DG------DSISFWYDGPVILVSEIDGVRIITSTSHE 317 (410)
T ss_pred CCCcEEEEECCCcEEEEe--CCEEEEECC--------------CC------CceEEeccCceEEeccCCceEEEeCCceE
Confidence 455677776543333222 223443331 11 23566667766666644459999888888
Q ss_pred EEEeecC
Q 001790 996 RIRQVGS 1002 (1012)
Q Consensus 996 ~~~~~~~ 1002 (1012)
.++.+..
T Consensus 318 ~l~~Vp~ 324 (410)
T PF04841_consen 318 FLQRVPD 324 (410)
T ss_pred EEEECCH
Confidence 8887753
No 357
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.79 E-value=0.001 Score=73.33 Aligned_cols=145 Identities=16% Similarity=0.214 Sum_probs=86.2
Q ss_pred CCCCEeEEEEeeCCCEEEEEcCCcEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeE
Q 001790 830 LEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS 909 (1012)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~ 909 (1012)
.......+.++|+|++++++++|...+|.....+.... +.-...+|.+ .++ +|+-..+++|.|+.--+.+...
T Consensus 31 ~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k 103 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVK 103 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT-
T ss_pred CCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc-----CceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccce
Confidence 34457889999999999999999999999655554332 2345688988 666 5556668899997433333322
Q ss_pred EecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCccccEEEecCCCCCCCCceEEEEcCCCCEEEEEeCCeEEEE
Q 001790 910 KLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIY 989 (1012)
Q Consensus 910 ~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~d~~i~vw 989 (1012)
.+... ..+..+-. |.+|...+.+ .|.+||+.+++.++.+.+ .+|..+.|+++|.+++...+..+.++
T Consensus 104 ~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v--------~~vk~V~Ws~~g~~val~t~~~i~il 170 (443)
T PF04053_consen 104 SIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV--------SAVKYVIWSDDGELVALVTKDSIYIL 170 (443)
T ss_dssp ----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---------E-EEEEE-TTSSEEEEE-S-SEEEE
T ss_pred EEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec--------CCCcEEEEECCCCEEEEEeCCeEEEE
Confidence 33321 22343333 8888877655 799999999886544421 34789999999999999988888887
Q ss_pred ECCCc
Q 001790 990 DASKM 994 (1012)
Q Consensus 990 d~~~~ 994 (1012)
+.+..
T Consensus 171 ~~~~~ 175 (443)
T PF04053_consen 171 KYNLE 175 (443)
T ss_dssp EE-HH
T ss_pred Eecch
Confidence 75544
No 358
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.77 E-value=0.058 Score=61.90 Aligned_cols=110 Identities=8% Similarity=-0.045 Sum_probs=66.5
Q ss_pred CCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcce----------EEEEecCCCEEEEEeCCCcEEEEeCCCCee
Q 001790 550 GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNG----------VVQFDTTQNHFLAVGEDSQIKFWDMDNVNI 619 (1012)
Q Consensus 550 ~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~----------~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (1012)
+..+++++ .++.|+-+|..+|+.+-.+.......+. .+++ .+..++.++.|+.+...|..+|+.
T Consensus 69 ~g~vyv~s----~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~ 142 (527)
T TIGR03075 69 DGVMYVTT----SYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKV 142 (527)
T ss_pred CCEEEEEC----CCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCE
Confidence 33555554 3677888899999888776532211111 1122 245788888999999999999999
Q ss_pred EEEEecCCCCCCcceeEeec--CCCEEEEEEC------CCcEEEEEccCCceeee
Q 001790 620 LTSTDAEGGLPNLPRLRFSK--EGNLLAVTTA------DNGFKILANAIGLRSLR 666 (1012)
Q Consensus 620 ~~~~~~~~~~~~v~~v~~s~--~g~~l~~~~~------dg~i~iwd~~~~~~~~~ 666 (1012)
+......... .-..+.-+| .+..++++.. +|.|..+|..+++...+
T Consensus 143 ~W~~~~~~~~-~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 143 VWSKKNGDYK-AGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred Eeeccccccc-ccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 8776543211 001111122 1334555543 68899999999965543
No 359
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.73 E-value=0.013 Score=63.87 Aligned_cols=226 Identities=12% Similarity=0.155 Sum_probs=124.1
Q ss_pred ceEEEEEecCcceEEEeeccCeeEeeeccccccCC-CCCccc-----------cccceeeccC--------CCceeeecc
Q 001790 766 KVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNP-SGKATA-----------SAVPQHWLPS--------SGLLMANDV 825 (1012)
Q Consensus 766 ~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~-~g~~~~-----------~~~~~~~~~~--------~~~~~~~~~ 825 (1012)
.|+.+.|.++...|+++...|.|.+|.+....... ...... .....+-|+. .|..-...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 57899999999999999999999999998765432 100000 0011222222 232222222
Q ss_pred cCCCCCCCEeEEEEeeCCCEEEEEc-CCcEEEEEcCCCeEEEEEc--C------CCCCeeEEEEec----CCC---cEEE
Q 001790 826 AGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFM--S------PPPASTFLAFHP----QDN---NIIA 889 (1012)
Q Consensus 826 ~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~--~------~~~~i~~l~~sp----~d~---~~la 889 (1012)
.. ..++|++++.| |=-++|+|. +|.+.|.|++....+..-. . ....++++.|+- +|+ -+|.
T Consensus 83 ~~--~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DA--KQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp -----S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred ec--cCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 32 57899999997 556999998 8999999998777776522 2 233588888872 233 5788
Q ss_pred EEeCCCeEEEEEcc--C-Ce----EeEEecccCCCeEEEE-EcCC-C--------------------CEEEEEeCCCcEE
Q 001790 890 IGTEDSTIHIYNVR--V-DE----VKSKLKGHQKRITGLA-FSTS-L--------------------NILVSSGADAQLC 940 (1012)
Q Consensus 890 s~~~dg~v~iwd~~--~-~~----~~~~~~~h~~~V~~l~-~spd-g--------------------~~l~s~s~Dg~i~ 940 (1012)
+|...|.+.+|.+. . +. .......+.++|..+. |+.+ | .+++.++ +..++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-e~~ir 238 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-ESDIR 238 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-ccceE
Confidence 89999999999875 1 21 2222234667777665 4322 1 1444444 66799
Q ss_pred EEeCCCCCccccEEEecCCCCCCCCceEEEEc-----CCCCEEEEE-eCCeEEEEECCCceEEEeec
Q 001790 941 VWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFN-----ADQVRMLVV-HETQLAIYDASKMERIRQVG 1001 (1012)
Q Consensus 941 vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs-----~d~~~l~~~-~d~~i~vwd~~~~~~~~~~~ 1001 (1012)
++...+.+..... .... -....+.+. ..+..|++- .+|.+++|.+...+.+....
T Consensus 239 v~~~~~~k~~~K~----~~~~--~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~ 299 (395)
T PF08596_consen 239 VFKPPKSKGAHKS----FDDP--FLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVS 299 (395)
T ss_dssp EE-TT---EEEEE-----SS---EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE
T ss_pred EEeCCCCccccee----eccc--cccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhccc
Confidence 9999887643221 1110 122344553 234444443 79999999999999888774
No 360
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.65 E-value=0.093 Score=55.22 Aligned_cols=215 Identities=14% Similarity=0.170 Sum_probs=120.5
Q ss_pred ceEEEEEecCcceEEEeeccCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEE---EeeC
Q 001790 766 KVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIA---LSKN 842 (1012)
Q Consensus 766 ~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~s~d 842 (1012)
.|..+...++-+.+++-+ |+.+.++++..-........... ..+......+ .....+...+ -...
T Consensus 37 ~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~--------~~~~~~~~~~---~~~~~v~~f~~~~~~~~ 104 (275)
T PF00780_consen 37 SITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAF--------PKSRSLPTKL---PETKGVSFFAVNGGHEG 104 (275)
T ss_pred eEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccc--------cccccccccc---cccCCeeEEeecccccc
Confidence 377777777766655554 48999998765332211100000 0000000001 1233344444 2234
Q ss_pred CCEEEEEcCCcEEEEEcCCC-----eEEEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeEEeccc---
Q 001790 843 DSYVMSATGGKISLFNMMTF-----KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGH--- 914 (1012)
Q Consensus 843 g~~la~~sdg~i~lwd~~~~-----~~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~~~~h--- 914 (1012)
+..|+++...+|.+|..... +..+++.- ...+..++|.+ ..++.|..+ ...+.|+.++.....+...
T Consensus 105 ~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~~---~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~ 179 (275)
T PF00780_consen 105 SRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFLG---NKICVGTSK-GFYLIDLNTGSPSELLDPSDSS 179 (275)
T ss_pred ceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEeC---CEEEEEeCC-ceEEEecCCCCceEEeCccCCc
Confidence 45667777778888877643 45555553 36788999985 466666644 4888899877554433211
Q ss_pred ---------CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCccccEEEecCCCCCCCCceEEEEcCCCCEEEEEeCCe
Q 001790 915 ---------QKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQ 985 (1012)
Q Consensus 915 ---------~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~d~~ 985 (1012)
..++..+.. +++.+|++. |..-.+-|. .|+..+...+... ..+.++++ ...||++..++.
T Consensus 180 ~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~-----~~p~~~~~--~~pyli~~~~~~ 248 (275)
T PF00780_consen 180 SSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQWS-----SAPQSVAY--SSPYLIAFSSNS 248 (275)
T ss_pred chhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccEEEcC-----CchhEEEE--ECCEEEEECCCE
Confidence 123333344 345666643 333333344 4454432233322 33456666 456888887788
Q ss_pred EEEEECCCceEEEeecCCCeeEE
Q 001790 986 LAIYDASKMERIRQVGSPHICSI 1008 (1012)
Q Consensus 986 i~vwd~~~~~~~~~~~~~~i~~~ 1008 (1012)
|.||++.+|+.++.+....+.-+
T Consensus 249 iEV~~~~~~~lvQ~i~~~~~~~l 271 (275)
T PF00780_consen 249 IEVRSLETGELVQTIPLPNIRLL 271 (275)
T ss_pred EEEEECcCCcEEEEEECCCEEEE
Confidence 99999999999999987665443
No 361
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.62 E-value=0.0037 Score=68.80 Aligned_cols=187 Identities=16% Similarity=0.158 Sum_probs=110.0
Q ss_pred CCCceEEEEEecCCCcEEEEecCC---CeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCC
Q 001790 343 QGSTVISMDFHPSHQTLLLVGSSN---GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1012)
Q Consensus 343 h~~~V~~~~~spdg~~llasg~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 419 (1012)
-...+..-+|+|+++.+....-.. ..+.++++.+++.....+ + .+.-..-+|||||+
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-----------------~---~g~~~~P~fspDG~ 250 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-----------------F---NGNNGAPAFSPDGS 250 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-----------------c---CCccCCccCCCCCC
Confidence 556788899999998654442222 358999998887543211 2 22334568999999
Q ss_pred EEEEEE-CCCe--EEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEE--eCCCcceeeecCCc
Q 001790 420 YVGVAF-TKHL--IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW--ELSGRKLFNFEGHE 494 (1012)
Q Consensus 420 ~las~~-~d~~--v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vw--d~~~~~~~~~~~h~ 494 (1012)
+||.+. .||. |.+.|+.++...+ +..-.+.-..=.|+|||+. ++++.+..|.-.|| +..|.....+....
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~ 325 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGSQVTRLTFSG 325 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCCceeEeeccC
Confidence 988664 4554 6777887766332 3333333336689999997 34445556654555 46665554444332
Q ss_pred cCEEEEeccccCCceEEEEEec-CCe--EEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEee
Q 001790 495 APVYSICPHHKENIQFIFSTAI-DGK--IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1012)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~-dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 557 (1012)
..-..-.| ++||++++..+. +|. |.+.|+.++.. ..............+.++|+.+...+
T Consensus 326 ~~~~~p~~--SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 326 GGNSNPVW--SPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred CCCcCccC--CCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEec
Confidence 22223344 446677776664 344 55555555443 22222223344556788888877665
No 362
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.61 E-value=0.011 Score=57.89 Aligned_cols=238 Identities=11% Similarity=0.157 Sum_probs=137.9
Q ss_pred CceEEEEEecCCCcEEEEecCCCe-EEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEE
Q 001790 345 STVISMDFHPSHQTLLLVGSSNGE-ITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1012)
Q Consensus 345 ~~V~~~~~spdg~~llasg~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 423 (1012)
..--.|+|+|.-++-++.+-.-|+ ..++|..+.+.+.... ....+.+.||. .|||||++|..
T Consensus 68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~-----------s~~~RHfyGHG------vfs~dG~~LYA 130 (366)
T COG3490 68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLV-----------SQEGRHFYGHG------VFSPDGRLLYA 130 (366)
T ss_pred cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEe-----------cccCceeeccc------ccCCCCcEEEe
Confidence 344567788877655666655553 5678887766543211 01223466664 69999999986
Q ss_pred EECC-----CeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcC------------------CCcEEEE
Q 001790 424 AFTK-----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD------------------DKLIKVW 480 (1012)
Q Consensus 424 ~~~d-----~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~------------------d~~v~vw 480 (1012)
.-.| |.|-|||...+ ....-++..|.-.-..+.|.+||+. ++.+.. .-++.+.
T Consensus 131 TEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrt--lvvanGGIethpdfgR~~lNldsMePSlvll 206 (366)
T COG3490 131 TENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRT--LVVANGGIETHPDFGRTELNLDSMEPSLVLL 206 (366)
T ss_pred ecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCcE--EEEeCCceecccccCccccchhhcCccEEEE
Confidence 6433 67999999843 3334467788888889999999994 443321 1134456
Q ss_pred e-CCCcceee--ec--CCccCEEEEeccccCCceEEEEEecCCeE-----EEEEcCCCCceeeecCC-------CCcEEE
Q 001790 481 E-LSGRKLFN--FE--GHEAPVYSICPHHKENIQFIFSTAIDGKI-----KAWLYDTMGSRVDYDAP-------GHWCTT 543 (1012)
Q Consensus 481 d-~~~~~~~~--~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i-----~~wd~~~~~~~~~~~~~-------~~~v~~ 543 (1012)
| .+|..+.+ +. .+.-.|..++.. .||..++.+-..|.- .+=-...++....+... .+.|-+
T Consensus 207 d~atG~liekh~Lp~~l~~lSiRHld~g--~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigs 284 (366)
T COG3490 207 DAATGNLIEKHTLPASLRQLSIRHLDIG--RDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGS 284 (366)
T ss_pred eccccchhhhccCchhhhhcceeeeeeC--CCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhh
Confidence 6 66665533 22 234456666653 344444333222210 00000111111111111 235678
Q ss_pred EEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEe
Q 001790 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613 (1012)
Q Consensus 544 ~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 613 (1012)
++.+.+..+++..+. ..+...+||..+|..+..-.-.. +.-.-+...-+++.+.+|.+.++.
T Consensus 285 iA~n~~~glV~lTSP---~GN~~vi~da~tG~vv~~a~l~d-----aaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 285 IAANRRDGLVALTSP---RGNRAVIWDAATGAVVSEAALPD-----AAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred eeecccCCeEEEecC---CCCeEEEEEcCCCcEEecccccc-----cccceeccCceEEecCCceEEecc
Confidence 888877777776664 56778899999999876544322 222334455677777888888774
No 363
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.59 E-value=0.042 Score=55.40 Aligned_cols=202 Identities=15% Similarity=0.173 Sum_probs=111.5
Q ss_pred eeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEeCCCcceeeecCC-ccCEEEEeccccCCceEEEEEecCCeEEEEE
Q 001790 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH-EAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524 (1012)
Q Consensus 446 ~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd 524 (1012)
.+.+-...+..++|.|+.+. +++.....+.|...+.+|+.++.+.-. .+..-.+++. +++.++++.-.++.+.+++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~t-LfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~--g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGT-LFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYL--GNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp E-TT--S-EEEEEEETTTTE-EEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE---STTEEEEEETTTTEEEEEE
T ss_pred ECCCccCCccccEEcCCCCe-EEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEE--CCCEEEEEEcCCCcEEEEE
Confidence 35555667999999998775 677777788888888889988776532 2456677763 3667777666689999998
Q ss_pred cCCCCce--------eeec---CCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCC---Ceee--eee---c--CC
Q 001790 525 YDTMGSR--------VDYD---APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE---GTIK--RTY---A--GF 583 (1012)
Q Consensus 525 ~~~~~~~--------~~~~---~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~---~~~~--~~~---~--~~ 583 (1012)
++..... ..+. .++..+-.++|.+.++.|+++-. ..-..+|.+.. .... ... . ..
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE----~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE----RKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL 168 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE----SSSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC----CCChhhEEEccccCccceeeccccccccccc
Confidence 8442211 1111 23346899999999888887753 33344444432 1111 111 1 11
Q ss_pred CCCcceEEEEecCCCEEEE-EeCCCcEEEEeCCCCeeEEEEecCCC-------CCCcceeEeecCCCEEEEEECCCcEEE
Q 001790 584 RKKSNGVVQFDTTQNHFLA-VGEDSQIKFWDMDNVNILTSTDAEGG-------LPNLPRLRFSKEGNLLAVTTADNGFKI 655 (1012)
Q Consensus 584 ~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~v~~s~~g~~l~~~~~dg~i~i 655 (1012)
....+..++++|....++. ...+..|..+| ..|+.+..+..... ....-.|+|.++|++.++ +..+..++
T Consensus 169 ~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~ 246 (248)
T PF06977_consen 169 FVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYR 246 (248)
T ss_dssp -SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEE
T ss_pred eeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEE
Confidence 1224778999997766555 45778888899 67777777766542 124578999999865544 45555544
Q ss_pred E
Q 001790 656 L 656 (1012)
Q Consensus 656 w 656 (1012)
|
T Consensus 247 f 247 (248)
T PF06977_consen 247 F 247 (248)
T ss_dssp E
T ss_pred e
Confidence 3
No 364
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.00064 Score=69.88 Aligned_cols=113 Identities=12% Similarity=0.143 Sum_probs=90.3
Q ss_pred hHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCC----------HHHHHHHhhccCHHHHHHHHcCCCCCCCcccchhHHH
Q 001790 5 SRELVFLILQFLEEEKFKESVHKLEKESGFFFN----------MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFF 74 (1012)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~----------~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~ 74 (1012)
.+.++.+|..++.+.|....+..|-+|+|...+ +..+-+++..|+-.-|+..+..-...-.+. ...+.|
T Consensus 116 ~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~-~s~LE~ 194 (394)
T KOG2817|consen 116 SQVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK-SSSLEF 194 (394)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc-cccHHH
Confidence 344689999999999999999999999998863 778889999999999988887643221111 234889
Q ss_pred HHHHhHHhHhhccCCHH--HHHHHHHhhcccccccCHHHHHHHHHh
Q 001790 75 EIRKQKYLEALDRQDKA--KAVDILVNDLKVFSTFNEELFKEITQL 118 (1012)
Q Consensus 75 ~i~~~~~~ell~~~~~~--~A~~~l~~~~~~~~~~~~~~~~~l~~~ 118 (1012)
.+..+.|++++..|... +|++..|..++||...+...++.|-..
T Consensus 195 ~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~s 240 (394)
T KOG2817|consen 195 KLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMGS 240 (394)
T ss_pred HHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHHH
Confidence 99999999999999877 999999999999966555555544443
No 365
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=0.091 Score=57.88 Aligned_cols=209 Identities=12% Similarity=0.123 Sum_probs=141.1
Q ss_pred ceEEEEEccCCCEEE-EEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEc-CCCcEEEEe-CCC
Q 001790 408 SVSRVAWSPDGNYVG-VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVWE-LSG 484 (1012)
Q Consensus 408 ~V~~v~~spdg~~la-s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~-~d~~v~vwd-~~~ 484 (1012)
.-..++.++++..+. +...++.|.+.|..+........ .+. ....++++++++.++++-.. .++++.+.| .++
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~--vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~ 150 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIP--VGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN 150 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEee--ecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCC
Confidence 345688999888544 44456889999977755444221 122 66789999999864444443 378999999 778
Q ss_pred cceeeecCCccCEEEEeccccCCceEEEE-EecCCeEEEEEcCCCCcee-e---ecCCCCcEEEEEEccCCCeEEEeeec
Q 001790 485 RKLFNFEGHEAPVYSICPHHKENIQFIFS-TAIDGKIKAWLYDTMGSRV-D---YDAPGHWCTTMLYSADGSRLFSCGTS 559 (1012)
Q Consensus 485 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s-~~~dg~i~~wd~~~~~~~~-~---~~~~~~~v~~~~~s~~~~~l~~~~~~ 559 (1012)
+.+.+......+ ..+++.+ +|..++. -..++.|.+.|........ . ..........+.++++|.++.+....
T Consensus 151 ~~~~~~~vG~~P-~~~a~~p--~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~ 227 (381)
T COG3391 151 KVTATIPVGNTP-TGVAVDP--DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG 227 (381)
T ss_pred eEEEEEecCCCc-ceEEECC--CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEecc
Confidence 877775544344 7777765 5554444 4578999999966543332 1 11223345678899999988776531
Q ss_pred CCCCCcEEEEeCCCCeeeee-ecCCCCCcceEEEEecCCCEEEEEe-CCCcEEEEeCCCCeeEEEEec
Q 001790 560 KDGDSFLVEWNESEGTIKRT-YAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDA 625 (1012)
Q Consensus 560 ~~~~~~i~lwd~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~ 625 (1012)
..++.+...|..++..... ...... ....+.++|++..+.+.. ..+.+.+.|..+.........
T Consensus 228 -~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~ 293 (381)
T COG3391 228 -SGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPT 293 (381)
T ss_pred -CCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecc
Confidence 1236899999988877765 333332 345688999999998884 458999999988877776543
No 366
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.42 E-value=0.16 Score=56.34 Aligned_cols=195 Identities=11% Similarity=0.050 Sum_probs=101.5
Q ss_pred eEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcc---eee
Q 001790 368 EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDL---RQH 444 (1012)
Q Consensus 368 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~---~~~ 444 (1012)
.|.||+.. |+.+.+.. +.. +.|.++.|+.+.+ |++-..||.+++||+.+.... ...
T Consensus 62 ~I~iys~s-G~ll~~i~-----------------w~~--~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~~fsl~~~i 120 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIP-----------------WDS--GRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEFQFSLGEEI 120 (410)
T ss_pred EEEEECCC-CCEeEEEE-----------------ECC--CCEEEEEECCCCe-EEEEEcCCEEEEEeCCCceeechhhhc
Confidence 58888854 66654311 222 7899999998655 456669999999998743200 000
Q ss_pred eeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCc-ceeee---cCCcc------CEEE-EeccccCCceEEE
Q 001790 445 SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR-KLFNF---EGHEA------PVYS-ICPHHKENIQFIF 512 (1012)
Q Consensus 445 ~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~-~~~~~---~~h~~------~v~~-~~~~~~~~~~~l~ 512 (1012)
....-....+....+..+|- .+.+ .++.+.+-+ .... ..+.+ .+... .... ..+ ..+....+
T Consensus 121 ~~~~v~e~~i~~~~~~~~Gi--vvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l--~~~~~~~i 194 (410)
T PF04841_consen 121 EEEKVLECRIFAIWFYKNGI--VVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLL--SSDRVVEI 194 (410)
T ss_pred cccCcccccccccccCCCCE--EEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEe--ecCcceEE
Confidence 00111122232333333442 3333 355565555 3322 11111 11100 0000 111 22233444
Q ss_pred EEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEE
Q 001790 513 STAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQ 592 (1012)
Q Consensus 513 s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~ 592 (1012)
....++.+.+-+-..... ....+++..+++||+|++++... .+|.+.+.+..-.+....+..........+.
T Consensus 195 ~~~~g~~i~~i~~~~~~~----i~~~~~i~~iavSpng~~iAl~t----~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~ 266 (410)
T PF04841_consen 195 LLANGETIYIIDENSFKQ----IDSDGPIIKIAVSPNGKFIALFT----DSGNLWVVSSDFSEKLCEFDTDSKSPPKQMA 266 (410)
T ss_pred EEecCCEEEEEEcccccc----ccCCCCeEEEEECCCCCEEEEEE----CCCCEEEEECcccceeEEeecCcCCCCcEEE
Confidence 444555555333222111 11245899999999999998887 4788888876656666555554333555666
Q ss_pred EecCC
Q 001790 593 FDTTQ 597 (1012)
Q Consensus 593 ~s~~~ 597 (1012)
|+.+.
T Consensus 267 WCG~d 271 (410)
T PF04841_consen 267 WCGND 271 (410)
T ss_pred EECCC
Confidence 66543
No 367
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.42 E-value=0.074 Score=59.90 Aligned_cols=244 Identities=11% Similarity=0.105 Sum_probs=124.8
Q ss_pred ceEEEEEccCCCEEEEE-ECCC----eEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCC--------
Q 001790 408 SVSRVAWSPDGNYVGVA-FTKH----LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-------- 474 (1012)
Q Consensus 408 ~V~~v~~spdg~~las~-~~d~----~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d-------- 474 (1012)
.+...++||||+++|.+ +..| .+++.|+++|+.+.. .+... ....+.|.+|++. ++.+...+
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--~i~~~--~~~~~~W~~d~~~-~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--GIENP--KFSSVSWSDDGKG-FFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--EEEEE--ESEEEEECTTSSE-EEEEECSTTTSS-CCG
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC--ccccc--ccceEEEeCCCCE-EEEEEeCcccccccCC
Confidence 34468899999999976 3333 499999999865542 12211 1223999999985 33443222
Q ss_pred --CcEEEEe-CCCcc--eeeecCCccC--EEEEeccccCCceEEEEEecC----CeEEEEEcCCC-----CceeeecCCC
Q 001790 475 --KLIKVWE-LSGRK--LFNFEGHEAP--VYSICPHHKENIQFIFSTAID----GKIKAWLYDTM-----GSRVDYDAPG 538 (1012)
Q Consensus 475 --~~v~vwd-~~~~~--~~~~~~h~~~--v~~~~~~~~~~~~~l~s~~~d----g~i~~wd~~~~-----~~~~~~~~~~ 538 (1012)
..|+.|. -++.. ...+...... ...+.. +.++++++..... ..+.+.++... ..........
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~--s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~ 277 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSR--SKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED 277 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE---TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEe--cCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC
Confidence 2367777 33322 2344443333 445555 4466776654333 23666666653 2222222223
Q ss_pred CcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCee---eeeecCCCCCcceEEEEecCCCEEEEEe-CC--CcEEEE
Q 001790 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI---KRTYAGFRKKSNGVVQFDTTQNHFLAVG-ED--SQIKFW 612 (1012)
Q Consensus 539 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d--g~i~iw 612 (1012)
+....+... +..++..+..+...+.|...++..... ...+..+.. .+....+...+++|+... .+ ..|+++
T Consensus 278 ~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~-~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~ 354 (414)
T PF02897_consen 278 GVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDE-DVSLEDVSLFKDYLVLSYRENGSSRLRVY 354 (414)
T ss_dssp S-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SS-SEEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred ceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCC-ceeEEEEEEECCEEEEEEEECCccEEEEE
Confidence 333333333 443333332333567777778777653 223333333 233334444456666544 33 368899
Q ss_pred eCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEEC----CCcEEEEEccCCc
Q 001790 613 DMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA----DNGFKILANAIGL 662 (1012)
Q Consensus 613 d~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~----dg~i~iwd~~~~~ 662 (1012)
++..+.....+..... +.|..+...+++..+..... -+++..||+.++.
T Consensus 355 ~~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 355 DLDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp ETT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred ECCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 9984555555555432 24555555555554443322 3567788887774
No 368
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.14 Score=56.44 Aligned_cols=241 Identities=13% Similarity=0.115 Sum_probs=152.9
Q ss_pred ceEEEEEccCCCEEEEEECCC-eEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCc
Q 001790 408 SVSRVAWSPDGNYVGVAFTKH-LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (1012)
Q Consensus 408 ~V~~v~~spdg~~las~~~d~-~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~ 485 (1012)
....+...|++..+.....-. .+.+-+... ..... ....-...-..++.++++.. ..+....++.|.+.| ...+
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~-n~~~~--~~~~g~~~p~~i~v~~~~~~-vyv~~~~~~~v~vid~~~~~ 107 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATS-NTVTQ--SLSVGGVYPAGVAVNPAGNK-VYVTTGDSNTVSVIDTATNT 107 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeeccccc-ceeee--eccCCCccccceeeCCCCCe-EEEecCCCCeEEEEcCcccc
Confidence 455678888886555443222 344444331 11111 11111133456788888886 455566678999999 5555
Q ss_pred ceeeecCCccCEEEEeccccCCceEEEEEec---CCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCC
Q 001790 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAI---DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (1012)
Q Consensus 486 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 562 (1012)
......-.. ....+++.+ ++..++.+.. ++++.+.|..+............+ ..++++|+|..++.+.. .
T Consensus 108 ~~~~~~vG~-~P~~~~~~~--~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~---~ 180 (381)
T COG3391 108 VLGSIPVGL-GPVGLAVDP--DGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNS---D 180 (381)
T ss_pred eeeEeeecc-CCceEEECC--CCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEec---C
Confidence 544443222 455667755 4445554443 688888888777766664433334 89999999998888763 5
Q ss_pred CCcEEEEeCCCCeeeeeec----CCCCCcceEEEEecCCCEEEEEeCC---CcEEEEeCCCCeeEEEEecCCCCCCccee
Q 001790 563 DSFLVEWNESEGTIKRTYA----GFRKKSNGVVQFDTTQNHFLAVGED---SQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1012)
Q Consensus 563 ~~~i~lwd~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v 635 (1012)
++.|.+.|.......+ -. .........+.++++++.+++.... +.+...|..++.........+.. ....+
T Consensus 181 ~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v 258 (381)
T COG3391 181 DNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGV 258 (381)
T ss_pred CCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCce
Confidence 8899999977665553 11 1111234568999999987776543 69999999988877663222222 35678
Q ss_pred EeecCCCEEEEEECC-CcEEEEEccCC
Q 001790 636 RFSKEGNLLAVTTAD-NGFKILANAIG 661 (1012)
Q Consensus 636 ~~s~~g~~l~~~~~d-g~i~iwd~~~~ 661 (1012)
..+|+|..+.+.... +.+.+.|..+.
T Consensus 259 ~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 259 AVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred eECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 999999999888554 78888887765
No 369
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.38 E-value=0.048 Score=63.78 Aligned_cols=141 Identities=15% Similarity=0.124 Sum_probs=93.7
Q ss_pred CCEEEEE-ECCCeEEEEeecCCCcceeeeeeeccccC-eEEEEEeCCCC-----ceEEEEEcCCCcEEEEe--CCCccee
Q 001790 418 GNYVGVA-FTKHLIQLYSYAGSNDLRQHSQIDAHVGA-VNDLAFAYPNK-----LLCVVTCGDDKLIKVWE--LSGRKLF 488 (1012)
Q Consensus 418 g~~las~-~~d~~v~vwd~~~~~~~~~~~~l~~h~~~-v~~l~~s~~~~-----~~~l~s~~~d~~v~vwd--~~~~~~~ 488 (1012)
.++|+.- .....|+-.|++.|+.+. .+..|... |.. +.|+.+ .--.+.|-.++.+..|| ..|..+.
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~---eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v 567 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVE---EWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV 567 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEE---EeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCCcee
Confidence 3444433 245678889999998776 45555543 544 444321 00245566688999999 5554332
Q ss_pred eecC----CccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCC
Q 001790 489 NFEG----HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1012)
Q Consensus 489 ~~~~----h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 564 (1012)
.-.. ......|++- +++| +||.|+.+|.||+||--..+....+.+-+.+|..|..+.||+++++.+ +.
T Consensus 568 ~~~~k~Y~~~~~Fs~~aT--t~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-----~t 639 (794)
T PF08553_consen 568 DSQSKQYSSKNNFSCFAT--TEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-----KT 639 (794)
T ss_pred eccccccccCCCceEEEe--cCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-----cc
Confidence 2112 2345666664 3343 899999999999999544444445667788999999999999999887 67
Q ss_pred cEEEEeC
Q 001790 565 FLVEWNE 571 (1012)
Q Consensus 565 ~i~lwd~ 571 (1012)
.|.+++.
T Consensus 640 yLlLi~t 646 (794)
T PF08553_consen 640 YLLLIDT 646 (794)
T ss_pred eEEEEEE
Confidence 7888775
No 370
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.35 E-value=9.6e-05 Score=79.72 Aligned_cols=158 Identities=13% Similarity=0.120 Sum_probs=107.4
Q ss_pred CEEEEeccccCCceEEEEEecCCeEEEEEcCCCCce--eeecCCCCcEEEEEEcc-CCCeEEEeeecCCCCCcEEEEeCC
Q 001790 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR--VDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNES 572 (1012)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~--~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~lwd~~ 572 (1012)
.+.|+++....+..+++.|..+|.|-+-.++..... .....+...+++++|++ |.+.|++|-..-+.+..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 455666655555567888888999988877654332 23445566899999988 556777765444568889999998
Q ss_pred CCe--ee--eeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCe-eEEEEecCCCCCCcceeEeec-CCCEEEE
Q 001790 573 EGT--IK--RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN-ILTSTDAEGGLPNLPRLRFSK-EGNLLAV 646 (1012)
Q Consensus 573 ~~~--~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~v~~s~-~g~~l~~ 646 (1012)
++- +. ..|.+.......+++|-.+.+.+++|.....+.++|++... ....+. ...+..+.++| .+.++++
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn----Tk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN----TKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh----hhhcccceecCCCCCceec
Confidence 762 21 12222222345678888888999999999899999987322 122221 11456778888 7778877
Q ss_pred EECCCcEEEEEc
Q 001790 647 TTADNGFKILAN 658 (1012)
Q Consensus 647 ~~~dg~i~iwd~ 658 (1012)
-. ||.|-+||.
T Consensus 214 ~~-dg~iAiwD~ 224 (783)
T KOG1008|consen 214 NS-DGDIAIWDT 224 (783)
T ss_pred cc-cCceeeccc
Confidence 65 899999994
No 371
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.34 E-value=0.0031 Score=72.48 Aligned_cols=152 Identities=9% Similarity=0.015 Sum_probs=90.3
Q ss_pred CCEeEEEEeeCCCEEEEEc-------CC--cEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEEeCC--------
Q 001790 832 EAVPCIALSKNDSYVMSAT-------GG--KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED-------- 894 (1012)
Q Consensus 832 ~~v~~~~~s~dg~~la~~s-------dg--~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~~d-------- 894 (1012)
..+...++||||+.+|... |. .+.+++.. +.......+. ..+.-.|+| +|..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECC-CCCceEEEecCcceEEEec
Confidence 3578899999999887653 33 46666652 3332222332 377889999 87777766532
Q ss_pred ----CeEEEEEccCCeEeEEecccCCCeEEEEEcCCCCEEEEEeCCCcEEE---EeCCCCCccccEEEecCCCCCCCCce
Q 001790 895 ----STIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCV---WSIDTWEKRKSVTIHIPAGKTPTGDT 967 (1012)
Q Consensus 895 ----g~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~v---wd~~~~~~~~~~~~~~~~~~~~~~v~ 967 (1012)
+.+.+.++..++... ...+.|..+.|||||..+|... ++.|++ -....|+....-...+..+.. ..+.
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~-~~~~ 500 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG-DTAV 500 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC-Cccc
Confidence 233333444443322 2346799999999999988776 577877 454555522111122222221 3358
Q ss_pred EEEEcCCCCEEEEEeCC--eEEEEECC
Q 001790 968 RVQFNADQVRMLVVHET--QLAIYDAS 992 (1012)
Q Consensus 968 ~l~fs~d~~~l~~~~d~--~i~vwd~~ 992 (1012)
++.|..++.+++...++ .+...++.
T Consensus 501 ~l~W~~~~~L~V~~~~~~~~v~~v~vD 527 (591)
T PRK13616 501 SLDWRTGDSLVVGRSDPEHPVWYVNLD 527 (591)
T ss_pred cceEecCCEEEEEecCCCCceEEEecC
Confidence 89999999976544433 34444444
No 372
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.001 Score=72.25 Aligned_cols=92 Identities=13% Similarity=0.145 Sum_probs=76.6
Q ss_pred CeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeEEecccCCCeE-EEEEcCCCCEEEEEeCCCcEEEEeCCCCCcccc
Q 001790 874 ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRIT-GLAFSTSLNILVSSGADAQLCVWSIDTWEKRKS 952 (1012)
Q Consensus 874 ~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~~~~h~~~V~-~l~~spdg~~l~s~s~Dg~i~vwd~~~~~~~~~ 952 (1012)
.+..+.|+| .-.++|++..+|.|.+..+. .+.+.++.-|...++ +++|.|||++||.|-.||+|++-|+.+|..+..
T Consensus 22 ~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 22 NIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred ceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 577899999 88999999999999999988 788888887777787 999999999999999999999999999886654
Q ss_pred EEEecCCCCCCCCceEEEEc
Q 001790 953 VTIHIPAGKTPTGDTRVQFN 972 (1012)
Q Consensus 953 ~~~~~~~~~~~~~v~~l~fs 972 (1012)
... ... ..|..+.|+
T Consensus 100 ~~~----s~e-~~is~~~w~ 114 (665)
T KOG4640|consen 100 FLF----SVE-TDISKGIWD 114 (665)
T ss_pred ccc----ccc-cchheeecc
Confidence 211 111 566777775
No 373
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.24 E-value=0.25 Score=48.89 Aligned_cols=231 Identities=11% Similarity=0.089 Sum_probs=132.6
Q ss_pred EEEEccC-CCEEEEEECCCe-EEEEeecCCCcceeeee-----eeccccCeEEEEEeCCCCceEEEEEcCC-----CcEE
Q 001790 411 RVAWSPD-GNYVGVAFTKHL-IQLYSYAGSNDLRQHSQ-----IDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KLIK 478 (1012)
Q Consensus 411 ~v~~spd-g~~las~~~d~~-v~vwd~~~~~~~~~~~~-----l~~h~~~v~~l~~s~~~~~~~l~s~~~d-----~~v~ 478 (1012)
.|+|+|. .+-++.+-.-|+ ..++|..+++.+..... +.+| =.|||||. +|+..-.| |.|-
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGH------Gvfs~dG~--~LYATEndfd~~rGViG 143 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGH------GVFSPDGR--LLYATENDFDPNRGVIG 143 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecc------cccCCCCc--EEEeecCCCCCCCceEE
Confidence 4677774 344555555554 56888888776553221 2233 36999999 55554333 6789
Q ss_pred EEe-C-CCcceeeecCCccCEEEEeccccCCceEEEEEec------C-C-----------eEEEEEcCCCCceeeec---
Q 001790 479 VWE-L-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI------D-G-----------KIKAWLYDTMGSRVDYD--- 535 (1012)
Q Consensus 479 vwd-~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~------d-g-----------~i~~wd~~~~~~~~~~~--- 535 (1012)
||| . .-+.+.++..|.-....+.+.+ ||..++.+.. | | ++.+.|..++..+.+..
T Consensus 144 vYd~r~~fqrvgE~~t~GiGpHev~lm~--DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~ 221 (366)
T COG3490 144 VYDAREGFQRVGEFSTHGIGPHEVTLMA--DGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPA 221 (366)
T ss_pred EEecccccceecccccCCcCcceeEEec--CCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCch
Confidence 999 3 3355677888877777777755 6677766532 0 1 12222323333222221
Q ss_pred -CCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEE-eCCCCeeeeeecCCCC------CcceEEEEecCCCEEEEEe-CC
Q 001790 536 -APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW-NESEGTIKRTYAGFRK------KSNGVVQFDTTQNHFLAVG-ED 606 (1012)
Q Consensus 536 -~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lw-d~~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~~~-~d 606 (1012)
.+.-.+..++..+||...+.+-..+..+..--+. -...++.+.-+..... ..+.+++.+.+..+++..+ ..
T Consensus 222 ~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~G 301 (366)
T COG3490 222 SLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRG 301 (366)
T ss_pred hhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCC
Confidence 2233688888889998777765433222111111 1122333333322111 2467788887777777766 45
Q ss_pred CcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEE
Q 001790 607 SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1012)
Q Consensus 607 g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd 657 (1012)
+...+||..+|..+..-.... +..++ +...-+++.+.+|.+.++.
T Consensus 302 N~~vi~da~tG~vv~~a~l~d----aaGva--~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 302 NRAVIWDAATGAVVSEAALPD----AAGVA--AAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred CeEEEEEcCCCcEEecccccc----cccce--eccCceEEecCCceEEecc
Confidence 567899999999887665432 23333 3444567777788888774
No 374
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.23 E-value=0.16 Score=53.41 Aligned_cols=230 Identities=15% Similarity=0.102 Sum_probs=126.1
Q ss_pred CCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEECCCeEEEEe
Q 001790 355 SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYS 434 (1012)
Q Consensus 355 dg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~v~vwd 434 (1012)
.++ .|+.|+.+| +.+++........ ...+...|..+...|+-+.|++-+ |+.+.+++
T Consensus 6 ~~~-~L~vGt~~G-l~~~~~~~~~~~~--------------------~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~ 62 (275)
T PF00780_consen 6 WGD-RLLVGTEDG-LYVYDLSDPSKPT--------------------RILKLSSITQLSVLPELNLLLVLS-DGQLYVYD 62 (275)
T ss_pred CCC-EEEEEECCC-EEEEEecCCccce--------------------eEeecceEEEEEEecccCEEEEEc-CCccEEEE
Confidence 455 588888888 8999883222111 011233499999999877777664 59999999
Q ss_pred ecCCCcceeeee-----------eeccccCeEEEE--EeCCCCceEEEEEcCCCcEEEEe-CCC-----cceeeecCCcc
Q 001790 435 YAGSNDLRQHSQ-----------IDAHVGAVNDLA--FAYPNKLLCVVTCGDDKLIKVWE-LSG-----RKLFNFEGHEA 495 (1012)
Q Consensus 435 ~~~~~~~~~~~~-----------l~~h~~~v~~l~--~s~~~~~~~l~s~~~d~~v~vwd-~~~-----~~~~~~~~h~~ 495 (1012)
+..-........ -......+...+ -...+.. .++.+. .+.|.+|. ... +..+.+. -..
T Consensus 63 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~-~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~-lp~ 139 (275)
T PF00780_consen 63 LDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSR-RLCVAV-KKKILIYEWNDPRNSFSKLLKEIS-LPD 139 (275)
T ss_pred chhhccccccccccccccccccccccccCCeeEEeeccccccce-EEEEEE-CCEEEEEEEECCcccccceeEEEE-cCC
Confidence 876443331100 011222344433 1123332 444444 45888887 332 3444444 346
Q ss_pred CEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCC------------CcEEEEEEccCCCeEEEeeecCCCC
Q 001790 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG------------HWCTTMLYSADGSRLFSCGTSKDGD 563 (1012)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~------------~~v~~~~~s~~~~~l~~~~~~~~~~ 563 (1012)
.+.+++|.. +.++.|..++ ..+.|++++.......... .++..+.. +++.+|++. +
T Consensus 140 ~~~~i~~~~----~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~------~ 207 (275)
T PF00780_consen 140 PPSSIAFLG----NKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY------D 207 (275)
T ss_pred CcEEEEEeC----CEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe------c
Confidence 788888862 3566666444 6678888655544332211 12333333 345555543 2
Q ss_pred CcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecC
Q 001790 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (1012)
Q Consensus 564 ~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1012)
..-...| ..|+..+...-.-...+..+++. ..++++.+.+ .|.||++.++++++.+...
T Consensus 208 ~~g~fv~-~~G~~~r~~~i~W~~~p~~~~~~--~pyli~~~~~-~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 208 NIGVFVN-KNGEPSRKSTIQWSSAPQSVAYS--SPYLIAFSSN-SIEVRSLETGELVQTIPLP 266 (275)
T ss_pred ceEEEEc-CCCCcCcccEEEcCCchhEEEEE--CCEEEEECCC-EEEEEECcCCcEEEEEECC
Confidence 2222333 34444331111111134455553 4677777665 5999999999999988754
No 375
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0014 Score=71.15 Aligned_cols=95 Identities=18% Similarity=0.329 Sum_probs=74.3
Q ss_pred CCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceE-EEEEccCCCEEE
Q 001790 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS-RVAWSPDGNYVG 422 (1012)
Q Consensus 344 ~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~v~~spdg~~la 422 (1012)
...|.-+.|+|.-. ++|.+..+|.|.+..+. .+.+.+ +.-|...++ +++|.|||+.||
T Consensus 20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qRlwt-------------------ip~p~~~v~~sL~W~~DGklla 78 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQRLWT-------------------IPIPGENVTASLCWRPDGKLLA 78 (665)
T ss_pred ccceEEEEEcCccc-hhheeccCCcEEEEEec-cceeEe-------------------ccCCCCccceeeeecCCCCEEE
Confidence 34789999999988 89999999999998877 444433 222555666 999999999999
Q ss_pred EEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeC
Q 001790 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY 461 (1012)
Q Consensus 423 s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~ 461 (1012)
+|-.||+|++.|+++|..+... ...-...|.++-|.+
T Consensus 79 Vg~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 79 VGFKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWDR 115 (665)
T ss_pred EEecCCeEEEEEccCCCceecc--ccccccchheeeccc
Confidence 9999999999999998766532 223456677777763
No 376
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.18 E-value=0.13 Score=53.96 Aligned_cols=222 Identities=15% Similarity=0.109 Sum_probs=132.7
Q ss_pred EEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEECCCeE
Q 001790 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLI 430 (1012)
Q Consensus 351 ~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~v 430 (1012)
.|.|++..++.+--..+.|.-|+..+++... +. +.+.+.++..-.++..|+++. .| +
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~~-~p~~~~~~~~~d~~g~Lv~~~-~g-~ 87 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------FP-SPGGFSSGALIDAGGRLIACE-HG-V 87 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------EE-CCCCcccceeecCCCeEEEEc-cc-c
Confidence 4567777677777778899999987665421 11 334455555555555565553 33 6
Q ss_pred EEEeecCCCcceeeeeee-c-cccCeEEEEEeCCCCceEEEEEcC-----------CCcEEEEeCCCcceeeecCCccCE
Q 001790 431 QLYSYAGSNDLRQHSQID-A-HVGAVNDLAFAYPNKLLCVVTCGD-----------DKLIKVWELSGRKLFNFEGHEAPV 497 (1012)
Q Consensus 431 ~vwd~~~~~~~~~~~~l~-~-h~~~v~~l~~s~~~~~~~l~s~~~-----------d~~v~vwd~~~~~~~~~~~h~~~v 497 (1012)
.+++.+++..+....... + -....+.+...|+|. +.++.-. -|.|+..|..+..++.+..+-..-
T Consensus 88 ~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~ 165 (307)
T COG3386 88 RLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIP 165 (307)
T ss_pred EEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEec
Confidence 777776665432222211 1 124567888899998 3333222 133444444566777677666677
Q ss_pred EEEeccccCCceEEEEE-ecCCeEEEEEcCC-----CCc--eeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEE
Q 001790 498 YSICPHHKENIQFIFST-AIDGKIKAWLYDT-----MGS--RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (1012)
Q Consensus 498 ~~~~~~~~~~~~~l~s~-~~dg~i~~wd~~~-----~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lw 569 (1012)
+.++|+|+ ++.++.+ +..+.|.-|+++. ... ........+..-.++...+|.+-+++.. +.+.|..|
T Consensus 166 NGla~SpD--g~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~---~g~~v~~~ 240 (307)
T COG3386 166 NGLAFSPD--GKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW---GGGRVVRF 240 (307)
T ss_pred CceEECCC--CCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc---CCceEEEE
Confidence 88999774 4455555 4458888887763 111 1222233445566777788877654432 23489999
Q ss_pred eCCCCeeeeeecCCCCCcceEEEEe-cCCCEEEEEe
Q 001790 570 NESEGTIKRTYAGFRKKSNGVVQFD-TTQNHFLAVG 604 (1012)
Q Consensus 570 d~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~ 604 (1012)
+.. |+.+..+..... .+++++|- ++.+.|++.+
T Consensus 241 ~pd-G~l~~~i~lP~~-~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 241 NPD-GKLLGEIKLPVK-RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CCC-CcEEEEEECCCC-CCccceEeCCCcCEEEEEe
Confidence 988 888888877654 56677775 4455555554
No 377
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.16 E-value=0.0012 Score=44.56 Aligned_cols=39 Identities=33% Similarity=0.567 Sum_probs=34.8
Q ss_pred CeEeEEecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001790 905 DEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 943 (1012)
Q Consensus 905 ~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd 943 (1012)
++++..+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 355667778999999999999999999999999999996
No 378
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.13 E-value=0.12 Score=51.77 Aligned_cols=163 Identities=11% Similarity=0.145 Sum_probs=108.1
Q ss_pred CCCEeEEEEeeCCCEEEEEc-CC--cEEEEEcCCCeEEEEEcCCCC-CeeEEEEecCCCcEEEEEeCCCeEEEEEccCCe
Q 001790 831 EEAVPCIALSKNDSYVMSAT-GG--KISLFNMMTFKVMTTFMSPPP-ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE 906 (1012)
Q Consensus 831 ~~~v~~~~~s~dg~~la~~s-dg--~i~lwd~~~~~~~~~~~~~~~-~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~ 906 (1012)
..-...+.|..+|.++-+.+ -| .|+.+|+.+++......-... ---.++.. ++++..-.-.++...+||..+.+
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccce
Confidence 34456788888888777665 44 599999999998766543322 12334444 44566667788999999999999
Q ss_pred EeEEecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCccccEEEecCCCCCCCCceEEEEcCCCCEEEEE-eCCe
Q 001790 907 VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQ 985 (1012)
Q Consensus 907 ~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~-~d~~ 985 (1012)
.+.++.- .+.=..++ .||+.|+.......++++|..+.+....+.+.. .+.....++.+.|- +|...|=. ....
T Consensus 122 ~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~-~g~pv~~LNELE~i-~G~IyANVW~td~ 196 (264)
T PF05096_consen 122 KIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTD-NGRPVSNLNELEYI-NGKIYANVWQTDR 196 (264)
T ss_dssp EEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE-TTEE---EEEEEEE-TTEEEEEETTSSE
T ss_pred EEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEE-CCEECCCcEeEEEE-cCEEEEEeCCCCe
Confidence 9988863 34456666 467777777767789999999988777666653 23333566778886 56544444 6778
Q ss_pred EEEEECCCceEEEee
Q 001790 986 LAIYDASKMERIRQV 1000 (1012)
Q Consensus 986 i~vwd~~~~~~~~~~ 1000 (1012)
|..-|.++|+++..+
T Consensus 197 I~~Idp~tG~V~~~i 211 (264)
T PF05096_consen 197 IVRIDPETGKVVGWI 211 (264)
T ss_dssp EEEEETTT-BEEEEE
T ss_pred EEEEeCCCCeEEEEE
Confidence 999999999999877
No 379
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.12 E-value=0.45 Score=49.60 Aligned_cols=153 Identities=18% Similarity=0.186 Sum_probs=83.6
Q ss_pred CCCCEeEEEEeeCCCEEEEEcCCcE-EEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEc-cCCeE
Q 001790 830 LEEAVPCIALSKNDSYVMSATGGKI-SLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNV-RVDEV 907 (1012)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~sdg~i-~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~-~~~~~ 907 (1012)
....+..+..++||+++++++.|.+ .-||--...-...-......|..|.|.| ++.+.+ ....|.|+.=+. ...+.
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~-~~~lw~-~~~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSP-DGNLWM-LARGGQIQFSDDPDDGET 220 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-T-TS-EEE-EETTTEEEEEE-TTEEEE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecC-CCCEEE-EeCCcEEEEccCCCCccc
Confidence 4566888889999999999997765 4677543222222233457899999999 776655 447888888772 22221
Q ss_pred eEE----ecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCccccEEEecCCCCCCCCceEEEEcCCCCEEEEEeC
Q 001790 908 KSK----LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHE 983 (1012)
Q Consensus 908 ~~~----~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~d 983 (1012)
-.. +..-.-.+..++|.+++...|+|+ .|.+ +...+.|+.= .........++....+.|..+.+-++.|.+
T Consensus 221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW---~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~ 295 (302)
T PF14870_consen 221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTW---QKDRVGENVPSNLYRIVFVNPDKGFVLGQD 295 (302)
T ss_dssp E---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS----EE-GGGTTSSS---EEEEEETTEEEEE-ST
T ss_pred cccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccc---eECccccCCCCceEEEEEcCCCceEEECCC
Confidence 111 111223478999999988888666 4433 3456665521 111111122256789999999999999999
Q ss_pred CeEEEE
Q 001790 984 TQLAIY 989 (1012)
Q Consensus 984 ~~i~vw 989 (1012)
|.|.-|
T Consensus 296 G~ll~~ 301 (302)
T PF14870_consen 296 GVLLRY 301 (302)
T ss_dssp TEEEEE
T ss_pred cEEEEe
Confidence 988765
No 380
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.10 E-value=0.11 Score=56.48 Aligned_cols=82 Identities=12% Similarity=0.225 Sum_probs=60.0
Q ss_pred cEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCC-----------------E-EE
Q 001790 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN-----------------H-FL 601 (1012)
Q Consensus 540 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-----------------~-l~ 601 (1012)
.+.+++.+|++++.++. |.-|.|.++|+.++..++.++|..+..+.-+.....+. + ++
T Consensus 309 ~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred eEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 57889999998877664 36899999999999999999988764444333222211 1 22
Q ss_pred EEeCCCcEEEEeCCCCeeEEEEec
Q 001790 602 AVGEDSQIKFWDMDNVNILTSTDA 625 (1012)
Q Consensus 602 ~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1012)
-+-..|.|.||.+++|..+..+..
T Consensus 385 yaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EeccCCeEEEEecCCCCEEEEEEe
Confidence 355789999999999988877765
No 381
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.04 E-value=0.08 Score=57.07 Aligned_cols=216 Identities=15% Similarity=0.157 Sum_probs=116.4
Q ss_pred CeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC----CCEEEEEEC----------CCeEEE
Q 001790 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD----GNYVGVAFT----------KHLIQL 432 (1012)
Q Consensus 367 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd----g~~las~~~----------d~~v~v 432 (1012)
+.|+|.|..+.+.+.+..+.- ..+-..+..+.+..+ ..+|++|.. .|.|.+
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~---------------~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v 66 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEP---------------NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILV 66 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEET---------------TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEE
T ss_pred cEEEEEeCCCCeEEEEEECCC---------------CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEE
Confidence 367888887777665433220 111223334444443 468887753 288999
Q ss_pred EeecCC----CcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeec--CCccCEEEEecccc
Q 001790 433 YSYAGS----NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE--GHEAPVYSICPHHK 505 (1012)
Q Consensus 433 wd~~~~----~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~--~h~~~v~~~~~~~~ 505 (1012)
+++... ..+..... ....++|++++-. .+. ++++. .+.|.+|+ ...+.+.... .....+.++...
T Consensus 67 ~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~~--lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~-- 138 (321)
T PF03178_consen 67 FEISESPENNFKLKLIHS-TEVKGPVTAICSF-NGR--LVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF-- 138 (321)
T ss_dssp EEECSS-----EEEEEEE-EEESS-EEEEEEE-TTE--EEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--
T ss_pred EEEEcccccceEEEEEEE-EeecCcceEhhhh-CCE--EEEee--cCEEEEEEccCcccchhhheecceEEEEEEecc--
Confidence 999984 23333222 2457889998876 333 33333 47899999 4444132222 223356666543
Q ss_pred CCceEEEEEecCCeEEEEEcCCCCcee---eecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCC-------C-
Q 001790 506 ENIQFIFSTAIDGKIKAWLYDTMGSRV---DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-------G- 574 (1012)
Q Consensus 506 ~~~~~l~s~~~dg~i~~wd~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~-------~- 574 (1012)
+++++.|.....+.++.++...... ........++++.+-++++.++++- .+|.+.++.... +
T Consensus 139 --~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D----~~gnl~~l~~~~~~~~~~~~~ 212 (321)
T PF03178_consen 139 --KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD----KDGNLFVLRYNPEIPNSRDGD 212 (321)
T ss_dssp --TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE----TTSEEEEEEE-SS-SSTTTTT
T ss_pred --ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc----CCCeEEEEEECCCCccccccc
Confidence 2488899888888888665433322 2223455788999987777666554 588888887642 1
Q ss_pred -eeeeeecCCCCCcceEE---EEec--CCC------EEEEEeCCCcEEE
Q 001790 575 -TIKRTYAGFRKKSNGVV---QFDT--TQN------HFLAVGEDSQIKF 611 (1012)
Q Consensus 575 -~~~~~~~~~~~~~v~~~---~~s~--~~~------~l~~~~~dg~i~i 611 (1012)
+......-|.+..++++ ++.| .+. .++.++.+|.|..
T Consensus 213 ~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 213 PKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp TBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred ccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 22223333333345555 3334 111 3666667777663
No 382
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.02 E-value=0.055 Score=58.33 Aligned_cols=139 Identities=15% Similarity=0.198 Sum_probs=86.4
Q ss_pred CCEEEEEc----------C-CcEEEEEcCCC-----eEE--EEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccC
Q 001790 843 DSYVMSAT----------G-GKISLFNMMTF-----KVM--TTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 904 (1012)
Q Consensus 843 g~~la~~s----------d-g~i~lwd~~~~-----~~~--~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~ 904 (1012)
..++++|. . |.|.++++... ++. ... ...++|++++-- +++ |+++. .+.|.+|++..
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~ 116 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHST-EVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDN 116 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEET
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhh--CCE-EEEee-cCEEEEEEccC
Confidence 46777773 1 77999999884 222 222 246789988866 345 44333 58899999998
Q ss_pred Ce-EeEEecc-cCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCc-cccEEEecCCCCCCCCceEEEEcCCCCEEEEE
Q 001790 905 DE-VKSKLKG-HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEK-RKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV 981 (1012)
Q Consensus 905 ~~-~~~~~~~-h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~ 981 (1012)
.+ ....-.- ....++++... +.+++.|+..+.+.++..+.... +.. +. ....+..++++.|.+|+..++++
T Consensus 117 ~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~--va--~d~~~~~v~~~~~l~d~~~~i~~ 190 (321)
T PF03178_consen 117 SKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLIL--VA--RDYQPRWVTAAEFLVDEDTIIVG 190 (321)
T ss_dssp TSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEE--EE--EESS-BEEEEEEEE-SSSEEEEE
T ss_pred cccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEE--EE--ecCCCccEEEEEEecCCcEEEEE
Confidence 77 4433221 22355555554 66999999888898886654221 111 11 11112568899999777666666
Q ss_pred -eCCeEEEEECC
Q 001790 982 -HETQLAIYDAS 992 (1012)
Q Consensus 982 -~d~~i~vwd~~ 992 (1012)
.+|.+.++..+
T Consensus 191 D~~gnl~~l~~~ 202 (321)
T PF03178_consen 191 DKDGNLFVLRYN 202 (321)
T ss_dssp ETTSEEEEEEE-
T ss_pred cCCCeEEEEEEC
Confidence 68999998876
No 383
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.02 E-value=0.044 Score=46.42 Aligned_cols=101 Identities=17% Similarity=0.273 Sum_probs=65.6
Q ss_pred eeEEEEec---CCCcEEEEEeCCCeEEEEEccCCeEeEEecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCccc
Q 001790 875 STFLAFHP---QDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRK 951 (1012)
Q Consensus 875 i~~l~~sp---~d~~~las~~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~~~~ 951 (1012)
|++|++.. ++...|++|++|..|++|+- .+.+..+. ..+.|++++-... ..++.+-.+|+|-+|+-....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl--- 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL--- 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCccee---
Confidence 56676654 33478899999999999974 36667766 3466888877766 567888899999888653311
Q ss_pred cEEEecCCCCCCCCceEEEEcC---CC-CEEEEE-eCCeEEE
Q 001790 952 SVTIHIPAGKTPTGDTRVQFNA---DQ-VRMLVV-HETQLAI 988 (1012)
Q Consensus 952 ~~~~~~~~~~~~~~v~~l~fs~---d~-~~l~~~-~d~~i~v 988 (1012)
...... ..+.++++.. || .-|++| ++|.|-+
T Consensus 75 ---WRiKSK---~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 75 ---WRIKSK---NQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred ---eeeccC---CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 111222 2345555544 33 256666 7887653
No 384
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.01 E-value=0.21 Score=54.42 Aligned_cols=83 Identities=10% Similarity=0.161 Sum_probs=58.3
Q ss_pred CCCCEeEEEEeeCCCEEEEEc-CCcEEEEEcCCCeEEEEEcCCCCCe-eEEEEecCC----------------Cc-EEEE
Q 001790 830 LEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPAS-TFLAFHPQD----------------NN-IIAI 890 (1012)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~i-~~l~~sp~d----------------~~-~las 890 (1012)
....+.+++.+|++++.|+.+ -|.|.++|+.++..++.++|-.+.- .-+...... .. +++.
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 556688999999999888876 4999999999999888887755431 111111101 11 3345
Q ss_pred EeCCCeEEEEEccCCeEeEEec
Q 001790 891 GTEDSTIHIYNVRVDEVKSKLK 912 (1012)
Q Consensus 891 ~~~dg~v~iwd~~~~~~~~~~~ 912 (1012)
+-.-|.|.||.+..|..+..+.
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEE
Confidence 6678899999999887776654
No 385
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.99 E-value=0.31 Score=51.14 Aligned_cols=106 Identities=17% Similarity=0.132 Sum_probs=67.4
Q ss_pred eEEEEEecCcceEEEeecc-CeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCE
Q 001790 767 VVRLLYTNSAVGLLALGSN-GVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSY 845 (1012)
Q Consensus 767 i~~l~~s~~g~~l~~~~~d-g~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 845 (1012)
-+.++||||++.++.+... +.|.-|++........+. ........ ..+..-.++...+|.+
T Consensus 165 ~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~----------------~~~~~~~~--~~G~PDG~~vDadG~l 226 (307)
T COG3386 165 PNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGR----------------RGFVDFDE--EPGLPDGMAVDADGNL 226 (307)
T ss_pred cCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCc----------------ceEEEccC--CCCCCCceEEeCCCCE
Confidence 3579999999888777664 777777665311111111 00001111 3344556788889998
Q ss_pred EEEEc-CC-cEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEE
Q 001790 846 VMSAT-GG-KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG 891 (1012)
Q Consensus 846 la~~s-dg-~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~ 891 (1012)
.+++- +| .|.+|+.+ |+.+..+.-+...+++++|--.+.+.|.+.
T Consensus 227 w~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iT 273 (307)
T COG3386 227 WVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYIT 273 (307)
T ss_pred EEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEE
Confidence 86554 44 89999998 999998888777889999864344444433
No 386
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.98 E-value=0.05 Score=62.79 Aligned_cols=182 Identities=12% Similarity=0.140 Sum_probs=100.7
Q ss_pred CceEEEEEecCcceEEEeec------cCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEE
Q 001790 765 SKVVRLLYTNSAVGLLALGS------NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIA 838 (1012)
Q Consensus 765 ~~i~~l~~s~~g~~l~~~~~------dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 838 (1012)
..+.+.+++|+|+.++.... |+.-.+|-.. . .+.. ..... ....+.-.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~--------------------~-gg~~-~~lt~----g~~~t~Ps 403 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGP--------------------L-GGVA-VQVLE----GHSLTRPS 403 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEe--------------------C-CCcc-eeeec----CCCCCCce
Confidence 46788999999998887762 3444444221 1 1111 11111 22367789
Q ss_pred EeeCCCEEEEEcCC-------------cEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEE---EEc
Q 001790 839 LSKNDSYVMSATGG-------------KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHI---YNV 902 (1012)
Q Consensus 839 ~s~dg~~la~~sdg-------------~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~i---wd~ 902 (1012)
|+|||+.|++..++ .+.+.++..++... ...+.|..+.||| ||..+|... +|.|++ -..
T Consensus 404 WspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~Vvr~ 478 (591)
T PRK13616 404 WSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSR-DGVRAAMII-GGKVYLAVVEQT 478 (591)
T ss_pred ECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECC-CCCEEEEEE-CCEEEEEEEEeC
Confidence 99998888776543 23333443333222 2245799999999 888887766 578887 444
Q ss_pred cCCeE-e---EEec-ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEe--CCCCCccccEEEecCCCCCCCCceEEEEcCCC
Q 001790 903 RVDEV-K---SKLK-GHQKRITGLAFSTSLNILVSSGADAQLCVWS--IDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQ 975 (1012)
Q Consensus 903 ~~~~~-~---~~~~-~h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd--~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~ 975 (1012)
..|+. + ..+. +-...+.++.|..++.++ .+..++.-.+|. ++..... ..+.+....++.+++=+++
T Consensus 479 ~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~-----~~~~~n~~~~v~~vaa~~~- 551 (591)
T PRK13616 479 EDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSD-----ALPSRNLSAPVVAVAASPS- 551 (591)
T ss_pred CCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCcccc-----ccCCCCccCceEEEecCCc-
Confidence 45541 1 1122 233346889999999865 444444444454 4432211 1122222266777877763
Q ss_pred CEEEEEeCC
Q 001790 976 VRMLVVHET 984 (1012)
Q Consensus 976 ~~l~~~~d~ 984 (1012)
..+++.+++
T Consensus 552 ~iyv~~~~g 560 (591)
T PRK13616 552 TVYVTDARA 560 (591)
T ss_pred eEEEEcCCc
Confidence 333333444
No 387
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.025 Score=60.57 Aligned_cols=145 Identities=12% Similarity=0.117 Sum_probs=99.0
Q ss_pred cCCCEEE-EEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceE-----EEEEcCCCcEEEEe--CCCc-c
Q 001790 416 PDGNYVG-VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC-----VVTCGDDKLIKVWE--LSGR-K 486 (1012)
Q Consensus 416 pdg~~la-s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~-----l~s~~~d~~v~vwd--~~~~-~ 486 (1012)
.+..+|+ ++.....++-.|++.|+.+. +..-|.. |.-+.+.|+.+.-. -+.|-.|..|.-|| ..|. .
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVe---EWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~k 418 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVE---EWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNK 418 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeee---EeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcce
Confidence 3444444 44555568888999998776 4555555 77788888764211 13455688999999 5555 3
Q ss_pred eeeecCCc----cCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCC
Q 001790 487 LFNFEGHE----APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (1012)
Q Consensus 487 ~~~~~~h~----~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 562 (1012)
+..-++|+ ....|.+- .++| ++++|+.+|.||+||--.......+.+-+.+|..+..+.||++|++.+
T Consensus 419 l~~~q~kqy~~k~nFsc~aT--T~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc----- 490 (644)
T KOG2395|consen 419 LAVVQSKQYSTKNNFSCFAT--TESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC----- 490 (644)
T ss_pred eeeeeccccccccccceeee--cCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-----
Confidence 33333332 23444443 4443 899999999999999744444556778888999999999999999887
Q ss_pred CCcEEEEeCC
Q 001790 563 DSFLVEWNES 572 (1012)
Q Consensus 563 ~~~i~lwd~~ 572 (1012)
+..+.+.++.
T Consensus 491 ~tyLlLi~t~ 500 (644)
T KOG2395|consen 491 KTYLLLIDTL 500 (644)
T ss_pred ccEEEEEEEe
Confidence 6777777653
No 388
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.90 E-value=0.93 Score=49.59 Aligned_cols=278 Identities=10% Similarity=0.128 Sum_probs=144.0
Q ss_pred ecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc-----CCCEEEEEECC
Q 001790 353 HPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-----DGNYVGVAFTK 427 (1012)
Q Consensus 353 spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-----dg~~las~~~d 427 (1012)
+++++..+++||..|.++||+...+..... .+ -.-..-..+|..++.-+ +...||+ -.-
T Consensus 33 ~~~~~d~IivGS~~G~LrIy~P~~~~~~~~-~l--------------llE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP 96 (418)
T PF14727_consen 33 SPSGSDKIIVGSYSGILRIYDPSGNEFQPE-DL--------------LLETQLKDPILQVECGKFVSGSEDLQLAV-LHP 96 (418)
T ss_pred CCCCccEEEEeccccEEEEEccCCCCCCCc-cE--------------EEEEecCCcEEEEEeccccCCCCcceEEE-ecC
Confidence 445556799999999999999854332111 00 00112345777776532 2345555 455
Q ss_pred CeEEEEeecCCCcc------eeeeeeeccccC--eEEEEEeC----CCCceEEEEEcCCCcEEEEeCCCcce-eeecC--
Q 001790 428 HLIQLYSYAGSNDL------RQHSQIDAHVGA--VNDLAFAY----PNKLLCVVTCGDDKLIKVWELSGRKL-FNFEG-- 492 (1012)
Q Consensus 428 ~~v~vwd~~~~~~~------~~~~~l~~h~~~--v~~l~~s~----~~~~~~l~s~~~d~~v~vwd~~~~~~-~~~~~-- 492 (1012)
..+.||.+...... .....+..|.-. ...++.-| .|+. ++..-+.||.+.+++.+.-.. +.+.+
T Consensus 97 ~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~-~IcVQS~DG~L~~feqe~~~f~~~lp~~l 175 (418)
T PF14727_consen 97 RKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRD-FICVQSMDGSLSFFEQESFAFSRFLPDFL 175 (418)
T ss_pred CEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCce-EEEEEecCceEEEEeCCcEEEEEEcCCCC
Confidence 67888887422111 111122233322 23333322 2233 788889999999999444332 23322
Q ss_pred CccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCC-----------------------ceeeecCCCC--cEEEEEEc
Q 001790 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG-----------------------SRVDYDAPGH--WCTTMLYS 547 (1012)
Q Consensus 493 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~-----------------------~~~~~~~~~~--~v~~~~~s 547 (1012)
..+++. +.+.. +.+++++.+..+..|....-. ..+++...+. .+..+.++
T Consensus 176 lPgPl~---Y~~~t--Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~ 250 (418)
T PF14727_consen 176 LPGPLC---YCPRT--DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFS 250 (418)
T ss_pred CCcCeE---EeecC--CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcC
Confidence 344444 33343 468888888888888652210 0111111111 23334444
Q ss_pred cCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEec----CC---CEEEEEeCCCcEEEEeCCCCeeE
Q 001790 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT----TQ---NHFLAVGEDSQIKFWDMDNVNIL 620 (1012)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~----~~---~~l~~~~~dg~i~iwd~~~~~~~ 620 (1012)
.....+++.+ +..+.+.+. +|......+- .-.+.....|.. ++ ..+++++.++.+.||. ..+++
T Consensus 251 ~~~~~IvvLg-----er~Lf~l~~-~G~l~~~krL-d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~--d~~L~ 321 (418)
T PF14727_consen 251 SSESDIVVLG-----ERSLFCLKD-NGSLRFQKRL-DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE--DTTLV 321 (418)
T ss_pred CCCceEEEEe-----cceEEEEcC-CCeEEEEEec-CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe--CCeEE
Confidence 3444555554 566777764 4544333222 111222222221 22 2588899999999986 33444
Q ss_pred EEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCC
Q 001790 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1012)
Q Consensus 621 ~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~ 661 (1012)
..-......-.+.-..|..-...+++-+.+|.+.+-=+.+.
T Consensus 322 WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 322 WSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTD 362 (418)
T ss_pred EecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCC
Confidence 44433221111122222233557888888999988766655
No 389
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.80 E-value=0.034 Score=65.01 Aligned_cols=145 Identities=11% Similarity=0.107 Sum_probs=97.9
Q ss_pred CCceEEEEEcCCCcEEEEe-CCCcceeeecCCccC-EEEEecccc---CCceEEEEEecCCeEEEEEcCCCCceeee-c-
Q 001790 463 NKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP-VYSICPHHK---ENIQFIFSTAIDGKIKAWLYDTMGSRVDY-D- 535 (1012)
Q Consensus 463 ~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~-v~~~~~~~~---~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~- 535 (1012)
.+.++|........|+-.| ..|+.+..+..|... |..++-... -+....+.|-.++.+..||.+..+..... .
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 3433455555668899999 899999999887754 777653211 01234567778889999999875532221 1
Q ss_pred ---CCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEE
Q 001790 536 ---APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFW 612 (1012)
Q Consensus 536 ---~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 612 (1012)
.......|++-+.+| +||+|+ .+|.|++||--..+....+.+.. .+|..+..+.||+++++.+.. .+.++
T Consensus 572 k~Y~~~~~Fs~~aTt~~G-~iavgs----~~G~IRLyd~~g~~AKT~lp~lG-~pI~~iDvt~DGkwilaTc~t-yLlLi 644 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDG-YIAVGS----NKGDIRLYDRLGKRAKTALPGLG-DPIIGIDVTADGKWILATCKT-YLLLI 644 (794)
T ss_pred cccccCCCceEEEecCCc-eEEEEe----CCCcEEeecccchhhhhcCCCCC-CCeeEEEecCCCcEEEEeecc-eEEEE
Confidence 123467888888888 566666 49999999954333333444544 489999999999999887754 66666
Q ss_pred eC
Q 001790 613 DM 614 (1012)
Q Consensus 613 d~ 614 (1012)
+.
T Consensus 645 ~t 646 (794)
T PF08553_consen 645 DT 646 (794)
T ss_pred EE
Confidence 64
No 390
>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID). The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various
Probab=96.80 E-value=0.0013 Score=59.44 Aligned_cols=78 Identities=18% Similarity=0.269 Sum_probs=62.6
Q ss_pred HHHHHHHhHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhhhcccCC-------chHHHHHHH
Q 001790 72 IFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD-------TKTARGIML 144 (1012)
Q Consensus 72 ~~~~i~~~~~~ell~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~r~~l~ 144 (1012)
++|+++.+.||||+..|...+|..|+.+.-.-+...+.+++++|+.+....+..+++....+++ .+.+-..|+
T Consensus 29 lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~~Ky~i~ms~~s~~lL~ 108 (133)
T cd08044 29 LLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENELAKLFRSNKYVIRMSRDAYSLLL 108 (133)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhHHHHHHHhCCEEEEECHHHHHHHH
Confidence 9999999999999999999999999987666555668899999999999888888777665544 344446666
Q ss_pred HHHHh
Q 001790 145 IELKK 149 (1012)
Q Consensus 145 ~~l~~ 149 (1012)
..|++
T Consensus 109 ~~L~~ 113 (133)
T cd08044 109 RFLES 113 (133)
T ss_pred HHHHH
Confidence 66665
No 391
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.78 E-value=0.044 Score=46.38 Aligned_cols=102 Identities=16% Similarity=0.161 Sum_probs=64.9
Q ss_pred eEEEEEe---cCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEE
Q 001790 347 VISMDFH---PSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1012)
Q Consensus 347 V~~~~~s---pdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 423 (1012)
|++|++. .||..-|++|+.|..|+||+-. +.+.+ +. -.+.|++++-... ..++.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~E-------------------i~-e~~~v~~L~~~~~-~~F~Y 58 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAE-------------------IT-ETDKVTSLCSLGG-GRFAY 58 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEE-------------------Ee-cccceEEEEEcCC-CEEEE
Confidence 5556554 4666779999999999999843 33321 11 2457888877765 67899
Q ss_pred EECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeC---CCCceEEEEEcCCCcEE
Q 001790 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY---PNKLLCVVTCGDDKLIK 478 (1012)
Q Consensus 424 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~---~~~~~~l~s~~~d~~v~ 478 (1012)
+..+|+|-+|+-... ..+ .+ .+..+.++++.. ||.. -|++|-.+|.|-
T Consensus 59 ~l~NGTVGvY~~~~R-lWR----iK-SK~~~~~~~~~D~~gdG~~-eLI~GwsnGkve 109 (111)
T PF14783_consen 59 ALANGTVGVYDRSQR-LWR----IK-SKNQVTSMAFYDINGDGVP-ELIVGWSNGKVE 109 (111)
T ss_pred EecCCEEEEEeCcce-eee----ec-cCCCeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence 999999999976431 111 22 222355655443 3333 577787777664
No 392
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.77 E-value=0.14 Score=59.27 Aligned_cols=235 Identities=11% Similarity=0.029 Sum_probs=122.9
Q ss_pred ccCCCEEEEEECCC------eEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCC------CcEEEEe-
Q 001790 415 SPDGNYVGVAFTKH------LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD------KLIKVWE- 481 (1012)
Q Consensus 415 spdg~~las~~~d~------~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d------~~v~vwd- 481 (1012)
+..+.+++.|+.++ .+..||..+++-.. ...+. +...-.+++.. +|. +.++||.| .++..||
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~-~a~m~-~~r~~~~~~~~-~~~--lYv~GG~~~~~~~l~~ve~YD~ 356 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS-LAPMP-SPRCRVGVAVL-NGK--LYVVGGYDSGSDRLSSVERYDP 356 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEee-cCCCC-cccccccEEEE-CCE--EEEEccccCCCcccceEEEecC
Confidence 33455666776663 58888888764322 11222 22223444444 344 77888888 3567788
Q ss_pred CCCcce--eeecCCccCEEEEeccccCCceEEEEEecCCe-----EEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEE
Q 001790 482 LSGRKL--FNFEGHEAPVYSICPHHKENIQFIFSTAIDGK-----IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (1012)
Q Consensus 482 ~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~-----i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 554 (1012)
..++-. ..+...........+ +|.+.+.||.||. +-.||..+.+-...-......-..-...-+|+..+
T Consensus 357 ~~~~W~~~a~M~~~R~~~~v~~l----~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi 432 (571)
T KOG4441|consen 357 RTNQWTPVAPMNTKRSDFGVAVL----DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYI 432 (571)
T ss_pred CCCceeccCCccCccccceeEEE----CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEE
Confidence 444422 222222222222221 5678889998864 66777665443332222222222222334677777
Q ss_pred EeeecCCCC--CcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCC-----cEEEEeCCCCeeEEEEecCC
Q 001790 555 SCGTSKDGD--SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS-----QIKFWDMDNVNILTSTDAEG 627 (1012)
Q Consensus 555 ~~~~~~~~~--~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~ 627 (1012)
+||.++..+ ..+..||..+++....-.......-..++ .-++...++||.|+ +|..||..+.+....-....
T Consensus 433 ~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~ 511 (571)
T KOG4441|consen 433 IGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS 511 (571)
T ss_pred EcCcCCCccccceEEEEcCCCCceeecCCcccccccceEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence 777544322 57888998887654433322221112222 23456666777665 37778887766554432222
Q ss_pred CCCCcceeEeecCCCEEEEEECCCc-----EEEEEccCC
Q 001790 628 GLPNLPRLRFSKEGNLLAVTTADNG-----FKILANAIG 661 (1012)
Q Consensus 628 ~~~~v~~v~~s~~g~~l~~~~~dg~-----i~iwd~~~~ 661 (1012)
....+..+ .-++...++|+.||. |..||..++
T Consensus 512 ~rs~~g~~--~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 512 PRSAVGVV--VLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ccccccEE--EECCEEEEEecccCccccceeEEcCCCCC
Confidence 21122222 226777888887754 555665554
No 393
>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID. The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.
Probab=96.73 E-value=0.0013 Score=60.25 Aligned_cols=78 Identities=14% Similarity=0.279 Sum_probs=56.6
Q ss_pred HHHHHHHhHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhhhcccCC-------chHHHHHHH
Q 001790 72 IFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD-------TKTARGIML 144 (1012)
Q Consensus 72 ~~~~i~~~~~~ell~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~r~~l~ 144 (1012)
++|+++.|.|++|+..|+.++|..|+.+...-+...+.+++++|..+....++.+++....++. ++.+-..|+
T Consensus 40 lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l~~~~~~~~~r~~Ky~I~ls~~s~~lL~ 119 (142)
T PF04494_consen 40 LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHLEENELARLFRSNKYVIRLSRDSFSLLL 119 (142)
T ss_dssp GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHHHHSHHHHHHHCSGEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHHhccHHHHHHHhCCeeEEECHHHHHHHH
Confidence 8999999999999999999999999988766666667888999988777777766655544433 344445555
Q ss_pred HHHHh
Q 001790 145 IELKK 149 (1012)
Q Consensus 145 ~~l~~ 149 (1012)
..|++
T Consensus 120 ~fL~~ 124 (142)
T PF04494_consen 120 QFLQE 124 (142)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55553
No 394
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.67 E-value=0.0052 Score=41.16 Aligned_cols=39 Identities=26% Similarity=0.461 Sum_probs=33.7
Q ss_pred CeEEEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEE
Q 001790 862 FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 901 (1012)
Q Consensus 862 ~~~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd 901 (1012)
++....+..|...|.++.|.+ ++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 345666778888999999999 778999999999999996
No 395
>PRK10115 protease 2; Provisional
Probab=96.61 E-value=2.5 Score=50.54 Aligned_cols=243 Identities=8% Similarity=0.006 Sum_probs=116.1
Q ss_pred cceEEEEEccCCCEEEEEECC-----CeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCC-----Cc
Q 001790 407 ISVSRVAWSPDGNYVGVAFTK-----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KL 476 (1012)
Q Consensus 407 ~~V~~v~~spdg~~las~~~d-----~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d-----~~ 476 (1012)
-.+..+.|||||++||.+... ..|++-|+.+|+.+.. .+.+ . -..++|++|++. ++++...+ ..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~-~--~~~~~w~~D~~~-~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN-V--EPSFVWANDSWT-FYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC-c--ceEEEEeeCCCE-EEEEEecCCCCCCCE
Confidence 356678999999999876432 2588999988864321 1222 1 146999999985 33333222 35
Q ss_pred EEEEe-CCC--cceeeecCCccCEEEEeccccCCceEEEEEec---CCeEEEEEcCC--CCceeeecCCCCcEEEEEEcc
Q 001790 477 IKVWE-LSG--RKLFNFEGHEAPVYSICPHHKENIQFIFSTAI---DGKIKAWLYDT--MGSRVDYDAPGHWCTTMLYSA 548 (1012)
Q Consensus 477 v~vwd-~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~i~~wd~~~--~~~~~~~~~~~~~v~~~~~s~ 548 (1012)
|+.++ .++ +-...+........ +......++.+++..+. ++.+.+++.+. ......+.........+. +.
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 278 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HY 278 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eC
Confidence 66677 444 22233333233333 22222334555544433 35688888533 222222222222222222 22
Q ss_pred CCCeEEEeeecCCCCCcEEEEeCCC-CeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEE--eCCCCeeEEEEec
Q 001790 549 DGSRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFW--DMDNVNILTSTDA 625 (1012)
Q Consensus 549 ~~~~l~~~~~~~~~~~~i~lwd~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw--d~~~~~~~~~~~~ 625 (1012)
+..+...+..+.....|...++.. ++....+.......+..+.+. .+..+++...+|.-+++ +..++ .+..+..
T Consensus 279 -~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~ 355 (686)
T PRK10115 279 -QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIAF 355 (686)
T ss_pred -CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEecC
Confidence 334443332222334455555552 222222332233356667776 23344445556655554 44333 3333332
Q ss_pred CCCCCCcceeEee--cCCC-EEEEEEC---CCcEEEEEccCC
Q 001790 626 EGGLPNLPRLRFS--KEGN-LLAVTTA---DNGFKILANAIG 661 (1012)
Q Consensus 626 ~~~~~~v~~v~~s--~~g~-~l~~~~~---dg~i~iwd~~~~ 661 (1012)
... ..+..+.++ +++. ++++.+. -+.+..+|..++
T Consensus 356 ~~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 356 DDP-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred CCC-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 111 112223344 3433 4443333 467788887765
No 396
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.54 E-value=0.15 Score=52.43 Aligned_cols=147 Identities=15% Similarity=0.126 Sum_probs=90.0
Q ss_pred CCEeEEEEeeCCCEEEEEc--CCcEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEE-ccCCeEe
Q 001790 832 EAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN-VRVDEVK 908 (1012)
Q Consensus 832 ~~v~~~~~s~dg~~la~~s--dg~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd-~~~~~~~ 908 (1012)
..+.+.++|+||+.+|... ++.-.+|-...+....... ....++.-.|++ ++...+....+...+++. ..+++..
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcce
Confidence 3688999999999887665 5443444333333333322 223678889999 677777767666667763 3333221
Q ss_pred -EEe--cccCCCeEEEEEcCCCCEEEEEe---CCCcEEEEeCCC---C-CccccEEEecCCCCCCCCceEEEEcCCCCEE
Q 001790 909 -SKL--KGHQKRITGLAFSTSLNILVSSG---ADAQLCVWSIDT---W-EKRKSVTIHIPAGKTPTGDTRVQFNADQVRM 978 (1012)
Q Consensus 909 -~~~--~~h~~~V~~l~~spdg~~l~s~s---~Dg~i~vwd~~~---~-~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~l 978 (1012)
..+ ..-.+.|+.+.+||||..+|... .++.|.|=-+.. + .............. ...+..+.|.+++.++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~-~~~v~~v~W~~~~~L~ 180 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL-LSDVTDVAWSDDSTLV 180 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc-cCcceeeeecCCCEEE
Confidence 111 11122899999999999988766 357777776542 2 11111112222221 2678999999999988
Q ss_pred EEE
Q 001790 979 LVV 981 (1012)
Q Consensus 979 ~~~ 981 (1012)
+.+
T Consensus 181 V~~ 183 (253)
T PF10647_consen 181 VLG 183 (253)
T ss_pred EEe
Confidence 887
No 397
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.50 E-value=0.18 Score=53.77 Aligned_cols=241 Identities=11% Similarity=0.049 Sum_probs=108.6
Q ss_pred ceEEEEEe-cCCeEEEEEcCCCCce----eeecC-------CCCcEEEEEEccCCCeEEEeeec--CCCCCcEEEEeCCC
Q 001790 508 IQFIFSTA-IDGKIKAWLYDTMGSR----VDYDA-------PGHWCTTMLYSADGSRLFSCGTS--KDGDSFLVEWNESE 573 (1012)
Q Consensus 508 ~~~l~s~~-~dg~i~~wd~~~~~~~----~~~~~-------~~~~v~~~~~s~~~~~l~~~~~~--~~~~~~i~lwd~~~ 573 (1012)
.++|+..+ ..+.|.+.|+.+.... ..+.. .-.....+-.-|+|+.++++-.+ +++.|.+.++|-++
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 35666655 6788999998743221 12221 01133445556899888876553 34556788899888
Q ss_pred CeeeeeecCCCC--CcceEEEEecCCCEEEEEeC--------------------CCcEEEEeCCCCeeEEEEecCCCCCC
Q 001790 574 GTIKRTYAGFRK--KSNGVVQFDTTQNHFLAVGE--------------------DSQIKFWDMDNVNILTSTDAEGGLPN 631 (1012)
Q Consensus 574 ~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~--------------------dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1012)
.+.......... ..-....+.|..+.+++... ..++.+||+.+.+.++++........
T Consensus 167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~ 246 (461)
T PF05694_consen 167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM 246 (461)
T ss_dssp --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence 888777765433 12345778888888887541 35799999999999999987643223
Q ss_pred cceeEee--cCCCEEEEEE-CCCcEEEEEc-cCCceeeeccc---C-----Cccc-------cccCccceeeeccccccc
Q 001790 632 LPRLRFS--KEGNLLAVTT-ADNGFKILAN-AIGLRSLRAVE---N-----PPFE-------ALRTPIESVALKVSASSA 692 (1012)
Q Consensus 632 v~~v~~s--~~g~~l~~~~-~dg~i~iwd~-~~~~~~~~~~~---~-----~~~~-------~~~~~v~~v~~s~~g~~l 692 (1012)
...+.|. |+..+-++++ -...|..|-- ..+....+.+. . .... ..-.-++.|.+|.|.++|
T Consensus 247 pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfL 326 (461)
T PF05694_consen 247 PLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFL 326 (461)
T ss_dssp EEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EE
T ss_pred eEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEE
Confidence 4455554 4444433333 3445554433 33321111110 0 0000 011224555555555554
Q ss_pred cccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCC-----------
Q 001790 693 VSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPEST----------- 761 (1012)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~----------- 761 (1012)
. +++-.+|.++.||+.....+.....+.+-+..
T Consensus 327 Y------------------------------------vs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~ 370 (461)
T PF05694_consen 327 Y------------------------------------VSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGK 370 (461)
T ss_dssp E------------------------------------EEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS---
T ss_pred E------------------------------------EEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCcccccc
Confidence 2 44555688999998875555554444433211
Q ss_pred CCCCceEEEEEecCcceEEEeec
Q 001790 762 DTSSKVVRLLYTNSAVGLLALGS 784 (1012)
Q Consensus 762 ~~~~~i~~l~~s~~g~~l~~~~~ 784 (1012)
.-.+...-+..|-||++|..+.+
T Consensus 371 ~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 371 RLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp ---S----EEE-TTSSEEEEE--
T ss_pred ccCCCCCeEEEccCCeEEEEEee
Confidence 11234467788888888877643
No 398
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.45 E-value=1.7 Score=46.75 Aligned_cols=58 Identities=17% Similarity=0.183 Sum_probs=35.8
Q ss_pred CCEEEEEeCCCcEEEEeCCCCee-EEEEecCCCC-CCcceeEeecCCCEEEEEECCCcEE
Q 001790 597 QNHFLAVGEDSQIKFWDMDNVNI-LTSTDAEGGL-PNLPRLRFSKEGNLLAVTTADNGFK 654 (1012)
Q Consensus 597 ~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~-~~v~~v~~s~~g~~l~~~~~dg~i~ 654 (1012)
+.++++.-..+.|....+..+.. .......... ..+..+++.|||.+.++...+|.|.
T Consensus 271 g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 271 GDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred CcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 34555555567888888764433 2222222222 2688999999999988888888774
No 399
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.39 E-value=0.73 Score=44.40 Aligned_cols=101 Identities=13% Similarity=0.117 Sum_probs=64.7
Q ss_pred EEEEEecCcceEEEee-ccCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEE
Q 001790 768 VRLLYTNSAVGLLALG-SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYV 846 (1012)
Q Consensus 768 ~~l~~s~~g~~l~~~~-~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 846 (1012)
..++|+.+.+.+.... .+-+|.-||++... |.. +..-.+++++..+.....+ --.+++..+|.+.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~t----G~~--snr~~i~dlrk~~~~e~~~--------PDGm~ID~eG~L~ 226 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPT----GDL--SNRKVIFDLRKSQPFESLE--------PDGMTIDTEGNLY 226 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCc----ccc--cCcceeEEeccCCCcCCCC--------CCcceEccCCcEE
Confidence 3577777776665554 46778778754321 111 1112344554433222111 1234556678777
Q ss_pred EEEc-CCcEEEEEcCCCeEEEEEcCCCCCeeEEEEec
Q 001790 847 MSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHP 882 (1012)
Q Consensus 847 a~~s-dg~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp 882 (1012)
++.- .++|..+|..+|+.+.++.-....|++++|--
T Consensus 227 Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 227 VATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred EEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 6665 78999999999999999999999999999964
No 400
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.34 E-value=1.4 Score=44.67 Aligned_cols=252 Identities=13% Similarity=0.069 Sum_probs=129.4
Q ss_pred CcceeEeecCCCEEEEEECCCcEEEEEccCC------ceeeecccCCccccccCccceeeeccccccccccCCCCCcccc
Q 001790 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIG------LRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVE 704 (1012)
Q Consensus 631 ~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~~~~~~~~ 704 (1012)
.-+.++++|.+.+.++....+...+||.... ..+.-.+.........+..+.+.|+......++...
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g------- 96 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEG------- 96 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCC-------
Confidence 3588999999988888888899999998621 111112111111111223444455443332221100
Q ss_pred ccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEec--CcceEEEe
Q 001790 705 RSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTN--SAVGLLAL 782 (1012)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~--~g~~l~~~ 782 (1012)
......++.++.||+|.-|.............+.+... ....--..+++.. .+.+|.++
T Consensus 97 ------------------~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s-~~gavYkGLAi~~~~~~~~LYaa 157 (336)
T TIGR03118 97 ------------------ITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDAS-QQGNVYKGLAVGPTGGGDYLYAA 157 (336)
T ss_pred ------------------cccceeEEEEeCCceEEeecCcCCcccccccEEEEccC-CCcceeeeeEEeecCCCceEEEe
Confidence 01123357788899999998532211000011222210 0112223455443 35556555
Q ss_pred e-ccCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeE---------EEEeeCCCEEEEEc-C
Q 001790 783 G-SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPC---------IALSKNDSYVMSAT-G 851 (1012)
Q Consensus 783 ~-~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---------~~~s~dg~~la~~s-d 851 (1012)
. .+++|.+||-.-......+...... ++..--...|.. ..-.+++..=+.+. -
T Consensus 158 dF~~g~IDVFd~~f~~~~~~g~F~DP~----------------iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~ 221 (336)
T TIGR03118 158 NFRQGRIDVFKGSFRPPPLPGSFIDPA----------------LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGL 221 (336)
T ss_pred ccCCCceEEecCccccccCCCCccCCC----------------CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCc
Confidence 4 4788998875443222122111000 000000111111 11112222112222 4
Q ss_pred CcEEEEEcCCCeEEEEEc--CCCCCeeEEEEec-----CCCcEEEEEeCCCeEEEEEccCCeEeEEecccCC------Ce
Q 001790 852 GKISLFNMMTFKVMTTFM--SPPPASTFLAFHP-----QDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQK------RI 918 (1012)
Q Consensus 852 g~i~lwd~~~~~~~~~~~--~~~~~i~~l~~sp-----~d~~~las~~~dg~v~iwd~~~~~~~~~~~~h~~------~V 918 (1012)
|.|-+||. .|..++++. +.-...+.|+..| -.+.+|+---.||+|..+|..+++.+..+....+ ..
T Consensus 222 G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GL 300 (336)
T TIGR03118 222 GYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGL 300 (336)
T ss_pred ceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCe
Confidence 67999998 677777774 2334556777655 2567888777899999999999988888765443 34
Q ss_pred EEEEEcC
Q 001790 919 TGLAFST 925 (1012)
Q Consensus 919 ~~l~~sp 925 (1012)
..|+|-.
T Consensus 301 WgL~fGn 307 (336)
T TIGR03118 301 WSLTFGN 307 (336)
T ss_pred EEeeeCC
Confidence 5667754
No 401
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.24 E-value=0.35 Score=51.70 Aligned_cols=236 Identities=14% Similarity=0.124 Sum_probs=99.9
Q ss_pred CCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceecc-CCCcceEEEEEccCCCEEEEEE--CC----
Q 001790 355 SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK-DVPISVSRVAWSPDGNYVGVAF--TK---- 427 (1012)
Q Consensus 355 dg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~spdg~~las~~--~d---- 427 (1012)
+.++|++-|-.++.|.|.|+.+.-..- +-.++.+.. .+.. .--..-..+-.-|+|+.++++- .+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P-~l~KvIe~~--------ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~ 156 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKP-RLHKVIEPE--------EVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGP 156 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS--EEEEEE-HH--------HHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S-
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCC-ceEeeeCHH--------HHHhhcCCCCCceeeecCCccEEEEeccCCCCCCC
Confidence 345445555578899999987432110 001111100 0010 0112223344557898888763 22
Q ss_pred CeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEc--------------------CCCcEEEEe-CCCcc
Q 001790 428 HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG--------------------DDKLIKVWE-LSGRK 486 (1012)
Q Consensus 428 ~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~--------------------~d~~v~vwd-~~~~~ 486 (1012)
|-+.+.|-++-+.......-.+....-+..-|.|..+ .++|.. ...++.+|| .+.+.
T Consensus 157 Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~n--vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~ 234 (461)
T PF05694_consen 157 GGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHN--VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKL 234 (461)
T ss_dssp -EEEEE-TTT--EEEE--SB-TT------EEEETTTT--EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEE
T ss_pred CcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCC--EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcE
Confidence 3477777766443321111111223345666777655 666654 346899999 88888
Q ss_pred eeeecCCc--cCEEEEeccccCCceEEEEEe-cCCeEEEEEc-CCCC----ceeeecCC-----------------CCcE
Q 001790 487 LFNFEGHE--APVYSICPHHKENIQFIFSTA-IDGKIKAWLY-DTMG----SRVDYDAP-----------------GHWC 541 (1012)
Q Consensus 487 ~~~~~~h~--~~v~~~~~~~~~~~~~l~s~~-~dg~i~~wd~-~~~~----~~~~~~~~-----------------~~~v 541 (1012)
++++.-.. .....+.|..+++..+=++++ -..+|..|-- +.+. ....+... ..-|
T Consensus 235 ~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Li 314 (461)
T PF05694_consen 235 LQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLI 314 (461)
T ss_dssp EEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE----
T ss_pred eeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCce
Confidence 88876432 235566666665544433333 3344444422 2211 11111110 2357
Q ss_pred EEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCe---eeeeec-CCC--------------CCcceEEEEecCCCEEEEE
Q 001790 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT---IKRTYA-GFR--------------KKSNGVVQFDTTQNHFLAV 603 (1012)
Q Consensus 542 ~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~---~~~~~~-~~~--------------~~~v~~~~~s~~~~~l~~~ 603 (1012)
+.+.+|.|.++|.+++. ..|.|+.||+.... .+.... +.. ......+..|.||++|+..
T Consensus 315 tDI~iSlDDrfLYvs~W---~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 315 TDILISLDDRFLYVSNW---LHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp --EEE-TTS-EEEEEET---TTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred EeEEEccCCCEEEEEcc---cCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 89999999999999887 68999999998632 222111 100 0123557778888877776
Q ss_pred e
Q 001790 604 G 604 (1012)
Q Consensus 604 ~ 604 (1012)
+
T Consensus 392 n 392 (461)
T PF05694_consen 392 N 392 (461)
T ss_dssp -
T ss_pred e
Confidence 4
No 402
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.21 E-value=1.7 Score=44.17 Aligned_cols=229 Identities=12% Similarity=0.081 Sum_probs=131.0
Q ss_pred CeEEEEEeCCCCceEEEEEcCCCcEEEEeCC-----Ccc---eeeecC-----CccCEEEEeccccCC----------ce
Q 001790 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWELS-----GRK---LFNFEG-----HEAPVYSICPHHKEN----------IQ 509 (1012)
Q Consensus 453 ~v~~l~~s~~~~~~~l~s~~~d~~v~vwd~~-----~~~---~~~~~~-----h~~~v~~~~~~~~~~----------~~ 509 (1012)
.-+.|+|+|.+. +-++....+...+||.. +.. +.++.. .....+.+.|+...+ ..
T Consensus 24 N~WGia~~p~~~--~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGP--FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCC--EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 357899999887 77777778899999933 222 223321 123466666653211 12
Q ss_pred EEEEEecCCeEEEEEcCCCCc-----eeeecCC--CCcEEEEEEcc--CCCeEEEeeecCCCCCcEEEEeCCCCeee--e
Q 001790 510 FIFSTAIDGKIKAWLYDTMGS-----RVDYDAP--GHWCTTMLYSA--DGSRLFSCGTSKDGDSFLVEWNESEGTIK--R 578 (1012)
Q Consensus 510 ~l~s~~~dg~i~~wd~~~~~~-----~~~~~~~--~~~v~~~~~s~--~~~~l~~~~~~~~~~~~i~lwd~~~~~~~--~ 578 (1012)
.++.+++||+|.-|....... ...+... ..-...+++.. .+.+|+.+-. ..++|.++|-.-.... .
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccccCCC
Confidence 367889999999997533222 1222211 22334455543 4667777654 5888999985433221 1
Q ss_pred eecCCC---C-CcceEEE-----------EecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeec----
Q 001790 579 TYAGFR---K-KSNGVVQ-----------FDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK---- 639 (1012)
Q Consensus 579 ~~~~~~---~-~~v~~~~-----------~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---- 639 (1012)
.|.... . .+..... -.++...=+.|..-|.|-+||. .+++++++...+....-+.|+..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence 111100 0 0011111 1111222223334578999997 577888887666666678888866
Q ss_pred --CCCEEEEEECCCcEEEEEccCCceeeecccCCccccccCccceeeecc
Q 001790 640 --EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKV 687 (1012)
Q Consensus 640 --~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~ 687 (1012)
.|.+|+---.||+|..+|..++...-...............+.++|..
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 456776666799999999988854433333333344445677777764
No 403
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=0.12 Score=55.54 Aligned_cols=139 Identities=8% Similarity=0.053 Sum_probs=90.3
Q ss_pred EEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCC--------eEEEeeecCCCCCcEEEEeCCCCee--eee
Q 001790 510 FIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS--------RLFSCGTSKDGDSFLVEWNESEGTI--KRT 579 (1012)
Q Consensus 510 ~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~--------~l~~~~~~~~~~~~i~lwd~~~~~~--~~~ 579 (1012)
++.++.....++-.|++.++.+..+..+.. |+-+.+.|+.+ .++-. .+..|.-||.+-... +..
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGL-----s~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGL-----SDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEee-----cCCceEEecccccCcceeee
Confidence 445566667788888888888888777766 77777777654 23322 378899999874322 222
Q ss_pred ecCC---CCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEE
Q 001790 580 YAGF---RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (1012)
Q Consensus 580 ~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw 656 (1012)
..++ .+....|.+-.. ..++++|+.+|.|++||.-..+....++.-+ .+|..|..+.+|++++..+. ..+.+.
T Consensus 422 ~q~kqy~~k~nFsc~aTT~-sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG--~~I~hVdvtadGKwil~Tc~-tyLlLi 497 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTE-SGYIVVGSLKGDIRLYDRIGRRAKTALPGLG--DAIKHVDVTADGKWILATCK-TYLLLI 497 (644)
T ss_pred eeccccccccccceeeecC-CceEEEeecCCcEEeehhhhhhhhhcccccC--CceeeEEeeccCcEEEEecc-cEEEEE
Confidence 2222 122244444444 4689999999999999983333333444433 38999999999998876654 466665
Q ss_pred Ec
Q 001790 657 AN 658 (1012)
Q Consensus 657 d~ 658 (1012)
++
T Consensus 498 ~t 499 (644)
T KOG2395|consen 498 DT 499 (644)
T ss_pred EE
Confidence 54
No 404
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.02 E-value=2.1 Score=46.85 Aligned_cols=198 Identities=11% Similarity=0.108 Sum_probs=107.5
Q ss_pred CCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeeccCeeEeeeccccccCCCCCc-
Q 001790 726 DKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKA- 804 (1012)
Q Consensus 726 ~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~- 804 (1012)
...+..-+.||.+.+++-+...- ...+++ .-.. ..++|.+....+++++++..+..|++..-.....+..
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~f-----~~~lp~-~llP---gPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~ 215 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFAF-----SRFLPD-FLLP---GPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSR 215 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEEE-----EEEcCC-CCCC---cCeEEeecCCEEEEecCceeEEEecHHHhhhccccccc
Confidence 34566777889999888654221 112221 1111 2477888888899999999999998765322111110
Q ss_pred ---------cccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEEEcCCcEEEEEcCCCeEEEEEcCCCCCe
Q 001790 805 ---------TASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPAS 875 (1012)
Q Consensus 805 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~i 875 (1012)
........|...-|+... .|..+.++.....+++-+..++.+.+. +|......+- ....
T Consensus 216 ~~~~~~~~~~~k~l~~dWs~nlGE~~l----------~i~v~~~~~~~~~IvvLger~Lf~l~~-~G~l~~~krL-d~~p 283 (418)
T PF14727_consen 216 QSGTEQDISSGKKLNPDWSFNLGEQAL----------DIQVVRFSSSESDIVVLGERSLFCLKD-NGSLRFQKRL-DYNP 283 (418)
T ss_pred cccccccccccccccceeEEECCceeE----------EEEEEEcCCCCceEEEEecceEEEEcC-CCeEEEEEec-CCce
Confidence 111122344444333211 123333333444555556667777766 4554443332 2222
Q ss_pred eEEE-Ee------cCCCcEEEEEeCCCeEEEEEccCCeEeEEecccCCCeEEEEE---cCCCCEEEEEeCCCcEEEEeCC
Q 001790 876 TFLA-FH------PQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAF---STSLNILVSSGADAQLCVWSID 945 (1012)
Q Consensus 876 ~~l~-~s------p~d~~~las~~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~---spdg~~l~s~s~Dg~i~vwd~~ 945 (1012)
.|++ |. +..+..+++++.++++.||. +.+++...+....+| ++.. ..-...|++-+.+|.+.+-=+.
T Consensus 284 ~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~--d~~L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLG 360 (418)
T PF14727_consen 284 SCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE--DTTLVWSAQLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLG 360 (418)
T ss_pred eeEEEEEeecccCCCCceEEEEEecCCeEEEEe--CCeEEEecCCCCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeC
Confidence 2222 21 21123578899999999996 344444444333333 3333 2334578889999999888776
Q ss_pred CC
Q 001790 946 TW 947 (1012)
Q Consensus 946 ~~ 947 (1012)
|.
T Consensus 361 Td 362 (418)
T PF14727_consen 361 TD 362 (418)
T ss_pred CC
Confidence 63
No 405
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.02 E-value=0.017 Score=40.57 Aligned_cols=34 Identities=29% Similarity=0.588 Sum_probs=30.0
Q ss_pred CCceEEEEEecCCCcEEEEecCCCeEEEEEccCCce
Q 001790 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDR 379 (1012)
Q Consensus 344 ~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~ 379 (1012)
...|.+++|+|... ++|.|+.+|.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcC
Confidence 45799999999999 8999999999999998 5554
No 406
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.97 E-value=0.02 Score=54.78 Aligned_cols=104 Identities=18% Similarity=0.228 Sum_probs=69.9
Q ss_pred CCEEEEEc-CCcEEEEEcCCCe-EEEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeEEecccC-CCeE
Q 001790 843 DSYVMSAT-GGKISLFNMMTFK-VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ-KRIT 919 (1012)
Q Consensus 843 g~~la~~s-dg~i~lwd~~~~~-~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~~~~h~-~~V~ 919 (1012)
+..+++|. +|.|++|+..... ....+......|-++--.-+++.+..+++.||.|+.|++.-++.+.....|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 45566666 9999999875211 1111112222333332222355688999999999999999998888877787 5666
Q ss_pred EEEEcCCCCEEEEE--eCCCcEEEEeCCC
Q 001790 920 GLAFSTSLNILVSS--GADAQLCVWSIDT 946 (1012)
Q Consensus 920 ~l~~spdg~~l~s~--s~Dg~i~vwd~~~ 946 (1012)
....+..+++++++ |.|..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 66666667777777 7788888888765
No 407
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.94 E-value=0.08 Score=61.84 Aligned_cols=103 Identities=17% Similarity=0.205 Sum_probs=75.8
Q ss_pred CCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCCcc
Q 001790 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1012)
Q Consensus 417 dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~ 495 (1012)
.+..++.|+..|.|-..|+.+.- .....-..-.++|++++|+.+|+ .++.|-.+|.|.+|| ..++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL--~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNL--GPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhccc--chhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 46678999999999888887642 21111223467899999999999 889999999999999 77888888887877
Q ss_pred CEEEEeccc-cCCceEEEEEecCCeEEEEEc
Q 001790 496 PVYSICPHH-KENIQFIFSTAIDGKIKAWLY 525 (1012)
Q Consensus 496 ~v~~~~~~~-~~~~~~l~s~~~dg~i~~wd~ 525 (1012)
+..++-++. .+++..++++...|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 776664432 334456778777776 4654
No 408
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.91 E-value=0.023 Score=66.00 Aligned_cols=101 Identities=17% Similarity=0.302 Sum_probs=74.8
Q ss_pred eCCCEEEEEc-CCcEEEEEcCCC-eEEEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeEEecccCCCe
Q 001790 841 KNDSYVMSAT-GGKISLFNMMTF-KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRI 918 (1012)
Q Consensus 841 ~dg~~la~~s-dg~i~lwd~~~~-~~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~~~~h~~~V 918 (1012)
--+..++.|+ .|.+...|+... .....-....++|++++|+. +|++++.|-.+|.|.+||+..++.++.+..|..++
T Consensus 97 ~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 97 IVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPV 175 (1206)
T ss_pred eeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCcc
Confidence 3455677777 577888887542 11122223456899999999 99999999999999999999999999988777776
Q ss_pred EEEEE---cCCCCEEEEEeCCCcEEEEeC
Q 001790 919 TGLAF---STSLNILVSSGADAQLCVWSI 944 (1012)
Q Consensus 919 ~~l~~---spdg~~l~s~s~Dg~i~vwd~ 944 (1012)
+++-+ ..++..+.++...|. +|.+
T Consensus 176 t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 176 TGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 66654 356667888777775 5554
No 409
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.89 E-value=0.03 Score=39.38 Aligned_cols=33 Identities=18% Similarity=0.414 Sum_probs=29.5
Q ss_pred CcceEEEEEccCCCEEEEEECCCeEEEEeecCCC
Q 001790 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN 439 (1012)
Q Consensus 406 ~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~ 439 (1012)
...|.+++|+|...+||.|..+|.|.++.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 457999999999999999999999999998 444
No 410
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.81 E-value=2.5 Score=42.68 Aligned_cols=191 Identities=11% Similarity=0.088 Sum_probs=111.3
Q ss_pred CCceEEEEEecCcceEEEeeccCeeEeeeccccccCCCCCccccccceeeccCCCceee-ecccCCCCCCCEeEEEEeeC
Q 001790 764 SSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA-NDVAGVNLEEAVPCIALSKN 842 (1012)
Q Consensus 764 ~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~d 842 (1012)
..-...+.|..+|..+-++|.-|.-++ +.+++.+|+... ..++ ...--..+++..|
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l--------------------~~~d~~tg~~~~~~~l~---~~~FgEGit~~~d 100 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSL--------------------RKVDLETGKVLQSVPLP---PRYFGEGITILGD 100 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEE--------------------EEEETTTSSEEEEEE-T---TT--EEEEEEETT
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEE--------------------EEEECCCCcEEEEEECC---ccccceeEEEECC
Confidence 445678999889998888888764333 233555555432 2222 2233344555444
Q ss_pred CCEEEEEcCCcEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeEEecccC-----CC
Q 001790 843 DSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ-----KR 917 (1012)
Q Consensus 843 g~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~~~~h~-----~~ 917 (1012)
.-+..+--++...+||..+.+.+.++.-. +.=..++. |+..|+.......++++|..+.+...++.-.. ..
T Consensus 101 ~l~qLTWk~~~~f~yd~~tl~~~~~~~y~-~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~ 176 (264)
T PF05096_consen 101 KLYQLTWKEGTGFVYDPNTLKKIGTFPYP-GEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSN 176 (264)
T ss_dssp EEEEEESSSSEEEEEETTTTEEEEEEE-S-SS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---
T ss_pred EEEEEEecCCeEEEEccccceEEEEEecC-CcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCC
Confidence 33334444899999999999999888643 34456663 55566666667789999988887766654321 24
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCccccEEEecCC-------CC--CCCCceEEEEcCCCCEEEEEe
Q 001790 918 ITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPA-------GK--TPTGDTRVQFNADQVRMLVVH 982 (1012)
Q Consensus 918 V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~-------~~--~~~~v~~l~fs~d~~~l~~~~ 982 (1012)
++-+.|- +|...|=.=....|..-|..+|+....+-+.... .+ ...-.+.++|.|++..+.+..
T Consensus 177 LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 177 LNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred cEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 5556675 6766666656667888899998876554432111 00 013457999988766655543
No 411
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.77 E-value=1.7 Score=44.65 Aligned_cols=150 Identities=15% Similarity=0.102 Sum_probs=85.0
Q ss_pred ceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEE
Q 001790 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1012)
Q Consensus 346 ~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~ 425 (1012)
.+.+.++|+||+.++++...++.-.||-...+..... .+. ...+..-.|+++|...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~------------------~~~--g~~l~~PS~d~~g~~W~v~~ 84 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRP------------------VLT--GGSLTRPSWDPDGWVWTVDD 84 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCccee------------------ecc--CCccccccccCCCCEEEEEc
Confidence 7999999999997666653334344444333332210 122 23677889999988877777
Q ss_pred CCCeEEEEe-ecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEE-cCCCcEEEEe----CCC------cceeeecCC
Q 001790 426 TKHLIQLYS-YAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC-GDDKLIKVWE----LSG------RKLFNFEGH 493 (1012)
Q Consensus 426 ~d~~v~vwd-~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~-~~d~~v~vwd----~~~------~~~~~~~~h 493 (1012)
.+...+++. ..++...........-.+.|.++++||||.++.++.- ..++.|.+=- ..| .........
T Consensus 85 ~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~ 164 (253)
T PF10647_consen 85 GSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL 164 (253)
T ss_pred CCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc
Confidence 666667774 3333322211111122228999999999997544442 2345666543 334 111222233
Q ss_pred ccCEEEEeccccCCceEEEEEecC
Q 001790 494 EAPVYSICPHHKENIQFIFSTAID 517 (1012)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~d 517 (1012)
...+..+.|.. ++.+++.+...
T Consensus 165 ~~~v~~v~W~~--~~~L~V~~~~~ 186 (253)
T PF10647_consen 165 LSDVTDVAWSD--DSTLVVLGRSA 186 (253)
T ss_pred cCcceeeeecC--CCEEEEEeCCC
Confidence 46788999965 44555555443
No 412
>PHA02713 hypothetical protein; Provisional
Probab=95.75 E-value=0.54 Score=54.68 Aligned_cols=152 Identities=7% Similarity=0.029 Sum_probs=75.8
Q ss_pred CceEEEEEecCC-----eEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCC-------------------C
Q 001790 507 NIQFIFSTAIDG-----KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKD-------------------G 562 (1012)
Q Consensus 507 ~~~~l~s~~~dg-----~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~-------------------~ 562 (1012)
+|.+.+.||.++ .+..||..+..-...-..........+..-+|+..+.||.+.. .
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~ 430 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHS 430 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccc
Confidence 457778888764 4778887764322211111111111112236666666664211 0
Q ss_pred CCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCC------CcEEEEeCCC-CeeEEEEecCCCCCCccee
Q 001790 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED------SQIKFWDMDN-VNILTSTDAEGGLPNLPRL 635 (1012)
Q Consensus 563 ~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~iwd~~~-~~~~~~~~~~~~~~~v~~v 635 (1012)
-..+..||..+.+-...-..... ........-++...+.||.+ ..+..||..+ .+-...............+
T Consensus 431 ~~~ve~YDP~td~W~~v~~m~~~-r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~ 509 (557)
T PHA02713 431 SNKVIRYDTVNNIWETLPNFWTG-TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTI 509 (557)
T ss_pred cceEEEECCCCCeEeecCCCCcc-cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeE
Confidence 23578899887654432221111 11111222345555666643 2467899887 4433222222221112222
Q ss_pred EeecCCCEEEEEECCC--cEEEEEccCC
Q 001790 636 RFSKEGNLLAVTTADN--GFKILANAIG 661 (1012)
Q Consensus 636 ~~s~~g~~l~~~~~dg--~i~iwd~~~~ 661 (1012)
+ -+|+..++|+.++ .+..||..+.
T Consensus 510 ~--~~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 510 L--HDNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred E--ECCEEEEEeeecceeehhhcCcccc
Confidence 2 2788889999887 5666776655
No 413
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.68 E-value=4.6 Score=44.89 Aligned_cols=115 Identities=7% Similarity=0.013 Sum_probs=69.3
Q ss_pred CCCcEEEEEEccCC-----CeEEEeeecCCCCCcEEEEeCC-----CCeeeeeecCCCCCc----ceEEEEecCCCEEEE
Q 001790 537 PGHWCTTMLYSADG-----SRLFSCGTSKDGDSFLVEWNES-----EGTIKRTYAGFRKKS----NGVVQFDTTQNHFLA 602 (1012)
Q Consensus 537 ~~~~v~~~~~s~~~-----~~l~~~~~~~~~~~~i~lwd~~-----~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~~ 602 (1012)
.-..|..+.|.|-+ .+|++-. ...|.+|.+. .++.+..-..+...+ ...+.|+|....|++
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQH-----kkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~V 129 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQH-----KKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTV 129 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEec-----cceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEE
Confidence 33468899999853 3555553 7889999875 223222222211111 234789999888877
Q ss_pred EeCCCcEEEEeCCCC--eeEEEEecCCCCCCcceeEeecCCCEEEEEECC-CcEEEEEcc
Q 001790 603 VGEDSQIKFWDMDNV--NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD-NGFKILANA 659 (1012)
Q Consensus 603 ~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d-g~i~iwd~~ 659 (1012)
-.....-.+++.... +....+.. .+.|.|.+|.+||+.|+++-.. =.-++||-.
T Consensus 130 LT~~dvSV~~sV~~d~srVkaDi~~---~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 130 LTARDVSVLPSVHCDSSRVKADIKT---SGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EecCceeEeeeeeeCCceEEEeccC---CceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 665444345555433 33333433 3479999999999988776443 356788754
No 414
>PRK10115 protease 2; Provisional
Probab=95.63 E-value=7.2 Score=46.74 Aligned_cols=241 Identities=10% Similarity=0.028 Sum_probs=118.4
Q ss_pred ceEEEEEecCCCcEEEEecCCC----eEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE
Q 001790 346 TVISMDFHPSHQTLLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1012)
Q Consensus 346 ~V~~~~~spdg~~llasg~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 421 (1012)
.+..+.+||||++++.+.+.+| .|++-|+.+|+.+.. .+.+ .-..++|++|++.|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~------------------~i~~---~~~~~~w~~D~~~~ 186 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE------------------LLDN---VEPSFVWANDSWTF 186 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc------------------cccC---cceEEEEeeCCCEE
Confidence 5778899999995444433333 688888887764321 0111 11459999999987
Q ss_pred EEEECC------CeEEEEeecCCC--cceeeeeeeccccCeE-EEEEeCCCCceEEEEEc-CCCcEEEEe--C-CCccee
Q 001790 422 GVAFTK------HLIQLYSYAGSN--DLRQHSQIDAHVGAVN-DLAFAYPNKLLCVVTCG-DDKLIKVWE--L-SGRKLF 488 (1012)
Q Consensus 422 as~~~d------~~v~vwd~~~~~--~~~~~~~l~~h~~~v~-~l~~s~~~~~~~l~s~~-~d~~v~vwd--~-~~~~~~ 488 (1012)
+....+ ..|..+++.++. ... .+........ .+..+.+++.+++.+.+ .++.+.+++ . ++....
T Consensus 187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d~l---v~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~ 263 (686)
T PRK10115 187 YYVRKHPVTLLPYQVWRHTIGTPASQDEL---VYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFV 263 (686)
T ss_pred EEEEecCCCCCCCEEEEEECCCChhHCeE---EEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceE
Confidence 766543 357788888872 222 1322223333 33344477753332222 235788888 2 344322
Q ss_pred eecCCccCEEEEeccccCCceEEEEEecC---CeEEEEEcCC-CCceeeecCC-CCcEEEEEEccCCCeEEEeeecCCCC
Q 001790 489 NFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDT-MGSRVDYDAP-GHWCTTMLYSADGSRLFSCGTSKDGD 563 (1012)
Q Consensus 489 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~~wd~~~-~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~ 563 (1012)
.+..-.+....+. +. .+ .+++....+ ..|...++.. ......+... ...+..+.+. ++.|+..... ++.
T Consensus 264 ~~~~~~~~~~~~~-~~-~~-~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~-~g~ 337 (686)
T PRK10115 264 FLPRRKDHEYSLD-HY-QH-RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQ-RGL 337 (686)
T ss_pred EEECCCCCEEEEE-eC-CC-EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEe-CCE
Confidence 2222222222222 22 12 333333222 2343344442 1222223332 3367777776 4455544431 123
Q ss_pred CcEEEEeCCCCeeeeeec-CCCCCcceEEEEe--cCCC-EEEEEe---CCCcEEEEeCCCCe
Q 001790 564 SFLVEWNESEGTIKRTYA-GFRKKSNGVVQFD--TTQN-HFLAVG---EDSQIKFWDMDNVN 618 (1012)
Q Consensus 564 ~~i~lwd~~~~~~~~~~~-~~~~~~v~~~~~s--~~~~-~l~~~~---~dg~i~iwd~~~~~ 618 (1012)
..+.+++..++. +..+. .... .+..+.++ +++. .+++.+ .-+.++.+|+.+++
T Consensus 338 ~~l~~~~~~~~~-~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 338 TSLRQINRKTRE-VIGIAFDDPA-YVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEEEcCCCCc-eEEecCCCCc-eEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 445666654333 33332 1111 22223344 3444 343333 35788999988765
No 415
>PRK13684 Ycf48-like protein; Provisional
Probab=95.60 E-value=4.2 Score=43.86 Aligned_cols=154 Identities=16% Similarity=0.109 Sum_probs=94.2
Q ss_pred CCCEeEEEEeeCCCEEEEEcCCcEEEEEcCCCe-EEEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeE
Q 001790 831 EEAVPCIALSKNDSYVMSATGGKISLFNMMTFK-VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS 909 (1012)
Q Consensus 831 ~~~v~~~~~s~dg~~la~~sdg~i~lwd~~~~~-~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~ 909 (1012)
...+..+.+.+++.+++++..|.+..-.-..++ -..........++++++.+ +++.+++| ..|.+++=..+.|..-.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCCCccc
Confidence 456788999999999988888876542112222 2222223445789999999 78776655 56766543344443222
Q ss_pred Eecc----cCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCccccEEEecCCCCCCCCceEEEEcCCCCEEEEEeCCe
Q 001790 910 KLKG----HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQ 985 (1012)
Q Consensus 910 ~~~~----h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~d~~ 985 (1012)
.... -...+..+.+.+++..++ ++.+|.+. ...+.|+.=.. .....+. +.....+.|..+++.+++|..|.
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~--~~~~~~~-~~~~~~~~~~~~~~~~~~G~~G~ 324 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEK--DPVGEEV-PSNFYKIVFLDPEKGFVLGQRGV 324 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeE--CCcCCCC-CcceEEEEEeCCCceEEECCCce
Confidence 1111 123578899999887655 55577554 45555542111 1111111 14578899999999999999999
Q ss_pred EEEEEC
Q 001790 986 LAIYDA 991 (1012)
Q Consensus 986 i~vwd~ 991 (1012)
|..|+-
T Consensus 325 il~~~~ 330 (334)
T PRK13684 325 LLRYVG 330 (334)
T ss_pred EEEecC
Confidence 988874
No 416
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.53 E-value=2.6 Score=49.01 Aligned_cols=230 Identities=10% Similarity=0.048 Sum_probs=113.3
Q ss_pred EEEEecCC------CeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEECC-C---
Q 001790 359 LLLVGSSN------GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK-H--- 428 (1012)
Q Consensus 359 llasg~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d-~--- 428 (1012)
+++.|+.+ ..+..+|..+++-..-.+ +. +...-.+++.. +|...++|+.| |
T Consensus 287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~-----------------m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~ 347 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAP-----------------MP-SPRCRVGVAVL-NGKLYVVGGYDSGSDR 347 (571)
T ss_pred EEEECCCCCCCcccceeEEecCCcCcEeecCC-----------------CC-cccccccEEEE-CCEEEEEccccCCCcc
Confidence 67777766 367788887764332111 11 11223334443 56788899888 3
Q ss_pred --eEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCC-----cEEEEe-CCCcc--eeeecCCccCEE
Q 001790 429 --LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-----LIKVWE-LSGRK--LFNFEGHEAPVY 498 (1012)
Q Consensus 429 --~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~-----~v~vwd-~~~~~--~~~~~~h~~~v~ 498 (1012)
++..||..+++-.. ...+...........+ +|. +.|.||.|| +|-.|| .+.+. +..+........
T Consensus 348 l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l--~g~--iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~g 422 (571)
T KOG4441|consen 348 LSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVL--DGK--LYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHG 422 (571)
T ss_pred cceEEEecCCCCceec-cCCccCccccceeEEE--CCE--EEEEeccccccccccEEEecCCCCcccccCCCCcceeeeE
Confidence 47788887765222 2222222222222222 466 778888886 467788 33322 222221111222
Q ss_pred EEeccccCCceEEEEEecCC------eEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecC-CCCCcEEEEeC
Q 001790 499 SICPHHKENIQFIFSTAIDG------KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK-DGDSFLVEWNE 571 (1012)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg------~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-~~~~~i~lwd~ 571 (1012)
.+.+ +|.+.++||.++ ++..||..+..-...-.........-...-++...+.||.++ .....+..||.
T Consensus 423 v~~~----~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp 498 (571)
T KOG4441|consen 423 VAVL----GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDP 498 (571)
T ss_pred EEEE----CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcC
Confidence 2222 567888888654 466777766544332222221111112233566666666432 11234777888
Q ss_pred CCCeeeeeecCCCCCcceEEEE-ecCCCEEEEEeCCC-----cEEEEeCCCCe
Q 001790 572 SEGTIKRTYAGFRKKSNGVVQF-DTTQNHFLAVGEDS-----QIKFWDMDNVN 618 (1012)
Q Consensus 572 ~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg-----~i~iwd~~~~~ 618 (1012)
.+.+....-.... ....+.. .-++...++|+.|| +|..||..+.+
T Consensus 499 ~~~~W~~v~~m~~--~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 499 ETNQWTMVAPMTS--PRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred CCCceeEcccCcc--ccccccEEEECCEEEEEecccCccccceeEEcCCCCCc
Confidence 8766544421111 1111111 22345566666654 45566655544
No 417
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.53 E-value=1.3 Score=42.86 Aligned_cols=143 Identities=10% Similarity=0.017 Sum_probs=79.4
Q ss_pred ccCeEEEEEeCCCCceEEEEEcC-C---------CcEEEEeCCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeE
Q 001790 451 VGAVNDLAFAYPNKLLCVVTCGD-D---------KLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKI 520 (1012)
Q Consensus 451 ~~~v~~l~~s~~~~~~~l~s~~~-d---------~~v~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i 520 (1012)
..+.+.-..+|+|+ +++ |.. | |.++.|-..++. ..+...-+--+.++|..+ ...+.++-+.+-.|
T Consensus 108 knR~NDgkvdP~Gr--yy~-GtMad~~~~le~~~g~Ly~~~~~h~v-~~i~~~v~IsNgl~Wd~d-~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGR--YYG-GTMADFGDDLEPIGGELYSWLAGHQV-ELIWNCVGISNGLAWDSD-AKKFYYIDSLNYEV 182 (310)
T ss_pred hcccccCccCCCCc--eee-eeeccccccccccccEEEEeccCCCc-eeeehhccCCcccccccc-CcEEEEEccCceEE
Confidence 44566677889998 432 321 1 223333322221 111111122345667533 22455566777788
Q ss_pred EEEEcC--CCC-----ceeeecC----CCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcce
Q 001790 521 KAWLYD--TMG-----SRVDYDA----PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNG 589 (1012)
Q Consensus 521 ~~wd~~--~~~-----~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~ 589 (1012)
.-||.+ ++. .+..+.. ..-....+++..+|++.+++- +.++|...|..+|+.+.++.-... .++
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~----ng~~V~~~dp~tGK~L~eiklPt~-qit 257 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATF----NGGTVQKVDPTTGKILLEIKLPTP-QIT 257 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEe----cCcEEEEECCCCCcEEEEEEcCCC-ceE
Confidence 888843 221 1111111 111223455566787777665 588999999999999999887765 789
Q ss_pred EEEEecC-CCEEEEE
Q 001790 590 VVQFDTT-QNHFLAV 603 (1012)
Q Consensus 590 ~~~~s~~-~~~l~~~ 603 (1012)
+++|... -..+++.
T Consensus 258 sccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 258 SCCFGGKNLDILYVT 272 (310)
T ss_pred EEEecCCCccEEEEE
Confidence 9998643 2344443
No 418
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.49 E-value=0.53 Score=53.87 Aligned_cols=114 Identities=14% Similarity=0.258 Sum_probs=76.9
Q ss_pred CCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeEEec-ccCCCeEEEEEc--CCCCEEEEEeCCCcEEEEeCCC---
Q 001790 873 PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK-GHQKRITGLAFS--TSLNILVSSGADAQLCVWSIDT--- 946 (1012)
Q Consensus 873 ~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~~~-~h~~~V~~l~~s--pdg~~l~s~s~Dg~i~vwd~~~--- 946 (1012)
..++.+.-|. -++..++-+...++.|||...+.....-. ...+.|..+.|. |||+.+.+.|-.+.|.++.-..
T Consensus 30 ~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 30 SNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 3445555555 45555544445589999999887543322 356889999986 8999999999999999986421
Q ss_pred ------CCccccEEEecCCCCCCCCceEEEEcCCCCEEEEEeCCeEEEEEC
Q 001790 947 ------WEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDA 991 (1012)
Q Consensus 947 ------~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~d~~i~vwd~ 991 (1012)
...++.+.+ ..+++.+|.+..|.+||.++ +|+++++.|+|-
T Consensus 109 ~~~~p~w~~i~~i~i---~~~T~h~Igds~Wl~~G~Lv-V~sGNqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDI---SSHTPHPIGDSIWLKDGTLV-VGSGNQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEe---ecCCCCCccceeEecCCeEE-EEeCCEEEEECC
Confidence 122222222 23444678999999999755 555778999874
No 419
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.46 E-value=1.7 Score=43.80 Aligned_cols=167 Identities=14% Similarity=0.180 Sum_probs=109.0
Q ss_pred CCCCEeEEEEeeCCCEEEEEcC-CcEEEEEcCCCeEEEEEcCC-CCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeE
Q 001790 830 LEEAVPCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSP-PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV 907 (1012)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~sd-g~i~lwd~~~~~~~~~~~~~-~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~ 907 (1012)
....++++.|+|+.+.|++..+ ..-.++=-.+|+.+.++.-. -...-.+++.. +++++++--.++.+.++.+..+..
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCCcc
Confidence 4556999999999998887774 44555555578888876531 12345678887 888888888889999998876532
Q ss_pred eEE-------ec--cc-CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCccccEEEecCCCCC------CCCceEEEE
Q 001790 908 KSK-------LK--GH-QKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKT------PTGDTRVQF 971 (1012)
Q Consensus 908 ~~~-------~~--~h-~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~------~~~v~~l~f 971 (1012)
+.. +. .+ ...-..++|.|..+.|..+-+-.-+.|+.+..+... ...+....+. ...|+++.|
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~--l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSS--LSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcc--cccccccCcccccceEeecccccee
Confidence 211 11 12 456778999999999998888888888877654321 1222222221 146788899
Q ss_pred cCCCCEEEE-E-eCCeEEEEECCCceEEEee
Q 001790 972 NADQVRMLV-V-HETQLAIYDASKMERIRQV 1000 (1012)
Q Consensus 972 s~d~~~l~~-~-~d~~i~vwd~~~~~~~~~~ 1000 (1012)
.+....|++ + .++.+...|. +|+.+..+
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~-~G~~~~~l 270 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDL-SGEVIELL 270 (316)
T ss_pred cCCCCcEEEEecCCceEEEEec-CCCeeeeE
Confidence 876555555 4 3556777775 45544443
No 420
>PHA02713 hypothetical protein; Provisional
Probab=95.45 E-value=0.95 Score=52.66 Aligned_cols=192 Identities=6% Similarity=-0.064 Sum_probs=91.1
Q ss_pred CCCEEEEEECC------CeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCC-----cEEEEe-CCC
Q 001790 417 DGNYVGVAFTK------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-----LIKVWE-LSG 484 (1012)
Q Consensus 417 dg~~las~~~d------~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~-----~v~vwd-~~~ 484 (1012)
++...+.||.+ ..+..||..+..-. ....+....... +++ .-+|+ +.+.||.++ ++..|| .++
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~-~~~-~~~g~--IYviGG~~~~~~~~sve~Ydp~~~ 377 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRF-SLA-VIDDT--IYAIGGQNGTNVERTIECYTMGDD 377 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhce-eEE-EECCE--EEEECCcCCCCCCceEEEEECCCC
Confidence 67777888754 34778887765321 111121111111 122 22565 566676653 477899 444
Q ss_pred cce--eeecCCccCEEEEeccccCCceEEEEEecCC-----------------------eEEEEEcCCCCceeeecCCCC
Q 001790 485 RKL--FNFEGHEAPVYSICPHHKENIQFIFSTAIDG-----------------------KIKAWLYDTMGSRVDYDAPGH 539 (1012)
Q Consensus 485 ~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg-----------------------~i~~wd~~~~~~~~~~~~~~~ 539 (1012)
+-. ..+.........+++ ++.+.+.||.++ .+..||..+..-...-.....
T Consensus 378 ~W~~~~~mp~~r~~~~~~~~----~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~ 453 (557)
T PHA02713 378 KWKMLPDMPIALSSYGMCVL----DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG 453 (557)
T ss_pred eEEECCCCCcccccccEEEE----CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcc
Confidence 322 122111111112221 456777777653 466677665432221111111
Q ss_pred cEEEEEEccCCCeEEEeeecCCC--CCcEEEEeCCC-Ceee--eeecCCCCCcceEEEEecCCCEEEEEeCCC--cEEEE
Q 001790 540 WCTTMLYSADGSRLFSCGTSKDG--DSFLVEWNESE-GTIK--RTYAGFRKKSNGVVQFDTTQNHFLAVGEDS--QIKFW 612 (1012)
Q Consensus 540 ~v~~~~~s~~~~~l~~~~~~~~~--~~~i~lwd~~~-~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~iw 612 (1012)
....-...-+|+..+.|+.++.. ...+..||..+ .+-. ..+..... ....+. -++...++||.+| .+..|
T Consensus 454 r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~-~~~~~~--~~~~iyv~Gg~~~~~~~e~y 530 (557)
T PHA02713 454 TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS-ALHTIL--HDNTIMMLHCYESYMLQDTF 530 (557)
T ss_pred cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc-cceeEE--ECCEEEEEeeecceeehhhc
Confidence 11111223356655666532111 12467899887 4433 33332221 122222 3567777888777 66677
Q ss_pred eCCCCeeE
Q 001790 613 DMDNVNIL 620 (1012)
Q Consensus 613 d~~~~~~~ 620 (1012)
|..+.+-.
T Consensus 531 d~~~~~W~ 538 (557)
T PHA02713 531 NVYTYEWN 538 (557)
T ss_pred Cccccccc
Confidence 77665543
No 421
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.43 E-value=8.4 Score=46.26 Aligned_cols=157 Identities=13% Similarity=0.081 Sum_probs=94.8
Q ss_pred eEEEEEecCCeEEEEEcCCCCceeeecCCCC------------cEEEEEEcc--CCCeEEEeeecCC------CCCcEEE
Q 001790 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH------------WCTTMLYSA--DGSRLFSCGTSKD------GDSFLVE 568 (1012)
Q Consensus 509 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~------------~v~~~~~s~--~~~~l~~~~~~~~------~~~~i~l 568 (1012)
..++.++.|+.+.-.|.++++....+...+. .-..+.-+| .+..+++++...+ ..|.|+-
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 4788888899999999999888876543211 000111112 2345666543222 2688999
Q ss_pred EeCCCCeeeeeecCCC----------------C-CcceEEEEecCCCEEEEEe------------------CCCcEEEEe
Q 001790 569 WNESEGTIKRTYAGFR----------------K-KSNGVVQFDTTQNHFLAVG------------------EDSQIKFWD 613 (1012)
Q Consensus 569 wd~~~~~~~~~~~~~~----------------~-~~v~~~~~s~~~~~l~~~~------------------~dg~i~iwd 613 (1012)
+|.++|+.+-.+.... . ..-...++.++...++.+. ..+.|.-.|
T Consensus 341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD 420 (764)
T TIGR03074 341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALD 420 (764)
T ss_pred EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEe
Confidence 9999999887764210 0 0112355666655555532 135577778
Q ss_pred CCCCeeEEEEecCCCC-------CCcceeEeec-CCC---EEEEEECCCcEEEEEccCCceee
Q 001790 614 MDNVNILTSTDAEGGL-------PNLPRLRFSK-EGN---LLAVTTADNGFKILANAIGLRSL 665 (1012)
Q Consensus 614 ~~~~~~~~~~~~~~~~-------~~v~~v~~s~-~g~---~l~~~~~dg~i~iwd~~~~~~~~ 665 (1012)
.++|+..-.++...|. ....-+.+.. +|+ .++.++.+|.+.++|..+++...
T Consensus 421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~ 483 (764)
T TIGR03074 421 ATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIV 483 (764)
T ss_pred CCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEe
Confidence 8888888777653221 0111122333 553 78899999999999999985443
No 422
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.38 E-value=3.1 Score=49.80 Aligned_cols=157 Identities=12% Similarity=0.087 Sum_probs=93.6
Q ss_pred EEEEEcCCCcEEEEe-CCCcceeeecCCccCEE-------------EEeccccCCceEEEEEec----------CCeEEE
Q 001790 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY-------------SICPHHKENIQFIFSTAI----------DGKIKA 522 (1012)
Q Consensus 467 ~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~v~-------------~~~~~~~~~~~~l~s~~~----------dg~i~~ 522 (1012)
.++.++.|+.+.-.| .+|+.+..+.. .+.|. .+.-.|.=.+..++.|+. +|.|+-
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 577788899999999 89998876632 11110 000001001134555542 688999
Q ss_pred EEcCCCCceeeecCC---------CC--------cE-EEEEEccCCCeEEEeeec--------------CCCCCcEEEEe
Q 001790 523 WLYDTMGSRVDYDAP---------GH--------WC-TTMLYSADGSRLFSCGTS--------------KDGDSFLVEWN 570 (1012)
Q Consensus 523 wd~~~~~~~~~~~~~---------~~--------~v-~~~~~s~~~~~l~~~~~~--------------~~~~~~i~lwd 570 (1012)
+|.++++....+... .+ .+ ..+++.++...++....+ ..-.+.|.-.|
T Consensus 341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD 420 (764)
T TIGR03074 341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALD 420 (764)
T ss_pred EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEe
Confidence 999999988765421 00 11 234555555555543211 01235677788
Q ss_pred CCCCeeeeeecC-CCC-------CcceEEEEec-CCC---EEEEEeCCCcEEEEeCCCCeeEEEEe
Q 001790 571 ESEGTIKRTYAG-FRK-------KSNGVVQFDT-TQN---HFLAVGEDSQIKFWDMDNVNILTSTD 624 (1012)
Q Consensus 571 ~~~~~~~~~~~~-~~~-------~~v~~~~~s~-~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1012)
.++|+..-.++. |++ ....-+.+.. +|+ .++.++.+|.++++|.++|+.+....
T Consensus 421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 421 ATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred CCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 889998877765 221 0111123333 453 78888899999999999999877654
No 423
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.35 E-value=0.14 Score=60.11 Aligned_cols=147 Identities=12% Similarity=0.075 Sum_probs=97.1
Q ss_pred CCCEeEEEEeeCCCEEEEEc--CC-cEEEEEcCCCeEEE-----EEcC------CCCCeeEEEEecCCCcEEEEEeCCCe
Q 001790 831 EEAVPCIALSKNDSYVMSAT--GG-KISLFNMMTFKVMT-----TFMS------PPPASTFLAFHPQDNNIIAIGTEDST 896 (1012)
Q Consensus 831 ~~~v~~~~~s~dg~~la~~s--dg-~i~lwd~~~~~~~~-----~~~~------~~~~i~~l~~sp~d~~~las~~~dg~ 896 (1012)
.-++..+...+|++..++.. +| .|..||+.+...-. -+.. ...-..++.|.|.-....|+...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 44566777788888776654 33 48899997553221 1111 12235677888733445667788999
Q ss_pred EEEEEccCCeE-eEEecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCccccEEEecCCCCCCCCceEEEEcCCC
Q 001790 897 IHIYNVRVDEV-KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQ 975 (1012)
Q Consensus 897 v~iwd~~~~~~-~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~ 975 (1012)
|++..+..... ...+. -...+++++|+|.|+.++.|-..|++.-|...-... . .++.+.-.....|.+++|...-
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik-~--~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK-S--EIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeeccccee-e--cccCCCcCCCcceeEEEEecce
Confidence 99887764322 22222 456789999999999999999999999887654321 1 2222222334789999999888
Q ss_pred CEEEEE
Q 001790 976 VRMLVV 981 (1012)
Q Consensus 976 ~~l~~~ 981 (1012)
.+|++-
T Consensus 256 eflvvy 261 (1405)
T KOG3630|consen 256 EFLVVY 261 (1405)
T ss_pred eEEEEe
Confidence 888874
No 424
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.28 E-value=3.1 Score=47.50 Aligned_cols=221 Identities=10% Similarity=0.095 Sum_probs=110.8
Q ss_pred CceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEE
Q 001790 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1012)
Q Consensus 345 ~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 424 (1012)
+.+-++..+|....=+. +..-.|+|+++. |..+.+ ++-.|. .+..+.||.+..+| +.
T Consensus 44 gGpIAV~r~p~~~~~~~--~a~~~I~If~~s-G~lL~~------------------~~w~~~-~lI~mgWs~~eeLI-~v 100 (829)
T KOG2280|consen 44 GGPIAVTRSPSKLVPLY--SARPYIRIFNIS-GQLLGR------------------ILWKHG-ELIGMGWSDDEELI-CV 100 (829)
T ss_pred CCceEEEeccccccccc--ccceeEEEEecc-ccchHH------------------HHhcCC-CeeeecccCCceEE-EE
Confidence 34455555654321111 223468888864 655542 122244 78889999776555 56
Q ss_pred ECCCeEEEEeecCCCcceee-eeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecC---CccCEEE
Q 001790 425 FTKHLIQLYSYAGSNDLRQH-SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG---HEAPVYS 499 (1012)
Q Consensus 425 ~~d~~v~vwd~~~~~~~~~~-~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~---h~~~v~~ 499 (1012)
..+|+++||++.... +... .-.......|..+.|..+|= +.-..+|.+.+-+ .....+.++.. ...+-.|
T Consensus 101 ~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~GV----avlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~ 175 (829)
T KOG2280|consen 101 QKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNGV----AVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSC 175 (829)
T ss_pred eccceEEEeecchhh-hcccccccccccCceeEEEEecCce----EEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcc
Confidence 799999999987532 2211 01122334566666666553 3333356666655 43333343332 1111111
Q ss_pred Eecccc-CCceEEEEEecCCeEEEEEcCCCCc-eeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeee
Q 001790 500 ICPHHK-ENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1012)
Q Consensus 500 ~~~~~~-~~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~ 577 (1012)
-..... .....++-....--..++..+.... ...+......+..+.+||+.++|+.-. ..|.+.+-+....+..
T Consensus 176 Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt----~~G~i~~vs~D~~~~l 251 (829)
T KOG2280|consen 176 WTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYT----ETGKIWVVSIDLSQIL 251 (829)
T ss_pred eeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEe----cCCcEEEEecchhhhh
Confidence 111111 1111111111000011111111111 112223345788899999999998876 4888988888777776
Q ss_pred eeecCCCCCcceEEEEecCC
Q 001790 578 RTYAGFRKKSNGVVQFDTTQ 597 (1012)
Q Consensus 578 ~~~~~~~~~~v~~~~~s~~~ 597 (1012)
..+..........++|..+.
T Consensus 252 ce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 252 CEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred hccCCCCCCchHhceeecCC
Confidence 66664433333445555443
No 425
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=95.23 E-value=9.3 Score=45.57 Aligned_cols=103 Identities=14% Similarity=0.224 Sum_probs=63.0
Q ss_pred EEeeCCCEEEEEcCCcEEEEEcCCCeEEEEEcC--CCCCeeEEEEecCCCcEEEEEeCCCeEEE--EEccCCeEeEEecc
Q 001790 838 ALSKNDSYVMSATGGKISLFNMMTFKVMTTFMS--PPPASTFLAFHPQDNNIIAIGTEDSTIHI--YNVRVDEVKSKLKG 913 (1012)
Q Consensus 838 ~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~--~~~~i~~l~~sp~d~~~las~~~dg~v~i--wd~~~~~~~~~~~~ 913 (1012)
|+.|-+.++.+|-...+++||+...++++.... -...|+.+.+ .+..+++|...-.|.+ |+-++.+. ..+..
T Consensus 940 Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt---~~~RI~VgD~qeSV~~~~y~~~~n~l-~~fad 1015 (1205)
T KOG1898|consen 940 AICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT---YGARIVVGDIQESVHFVRYRREDNQL-IVFAD 1015 (1205)
T ss_pred EEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee---cceEEEEeeccceEEEEEEecCCCeE-EEEeC
Confidence 455777788888889999999987776654432 2345777776 4456666765555554 44334433 34432
Q ss_pred --cCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001790 914 --HQKRITGLAFSTSLNILVSSGADAQLCVWSID 945 (1012)
Q Consensus 914 --h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~ 945 (1012)
-...|+++.+-.. ..+|.+..=|.+.+-.+.
T Consensus 1016 D~~pR~Vt~~~~lD~-~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1016 DPVPRHVTALELLDY-DTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred CCccceeeEEEEecC-CceeeccccCcEEEEECC
Confidence 2234666666543 456666666766666653
No 426
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.04 E-value=4.5 Score=40.94 Aligned_cols=119 Identities=13% Similarity=0.133 Sum_probs=85.4
Q ss_pred CCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 001790 537 PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1012)
Q Consensus 537 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 616 (1012)
....+.+++|+|+.+.|++.. +...-.++=..+|+.++++.-..-.....+.+..+++++++--.++.++++.+..
T Consensus 84 ~~~nvS~LTynp~~rtLFav~----n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVT----NKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred ccccccceeeCCCcceEEEec----CCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 344599999999999999887 3555566666789998887754444556688888877777766788898887765
Q ss_pred CeeEE-----EEecC---CCCCCcceeEeecCCCEEEEEECCCcEEEEEcc
Q 001790 617 VNILT-----STDAE---GGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1012)
Q Consensus 617 ~~~~~-----~~~~~---~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~ 659 (1012)
...+. .++.. ..+...-.++|+|..+.|.++-+..-+.||...
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 53222 11111 113356789999999999888888888888765
No 427
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=94.94 E-value=0.53 Score=49.72 Aligned_cols=163 Identities=12% Similarity=0.067 Sum_probs=100.4
Q ss_pred CCCCEeEEEEeeCCCEEEEEcCCcEEEEEcCCCeEEE-EEc-CCCC----Cee-EEEEecCCCcEEEEEeCCCeEEEE-E
Q 001790 830 LEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMT-TFM-SPPP----AST-FLAFHPQDNNIIAIGTEDSTIHIY-N 901 (1012)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~sdg~i~lwd~~~~~~~~-~~~-~~~~----~i~-~l~~sp~d~~~las~~~dg~v~iw-d 901 (1012)
....+..+-..|||+.+.+-+..++.++++.+..... ++. ...+ .|+ .+..-. ++.-|.+++.||-|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence 5567888899999999998888889999887654321 111 1111 122 222223 66777889999988876 4
Q ss_pred ccCC-e----EeEEecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCccccEEEecCCCCCCCCceEEEEcCCCC
Q 001790 902 VRVD-E----VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQV 976 (1012)
Q Consensus 902 ~~~~-~----~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~ 976 (1012)
+..+ . .++.++-...++..+.--.+.+-+++-+..|++.++.-...+.+ ..+... ..+..+++||.+.
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l---L~~~~~----~~~~~~~~Sp~~~ 370 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL---LFERAY----QAPQLVAMSPNQA 370 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce---ehhhhh----cCcceeeeCcccc
Confidence 4332 1 12222222233333333334456778888898887765544322 111111 3457799999999
Q ss_pred EEEEEeCCeEEEEECCCceEEEee
Q 001790 977 RMLVVHETQLAIYDASKMERIRQV 1000 (1012)
Q Consensus 977 ~l~~~~d~~i~vwd~~~~~~~~~~ 1000 (1012)
+|++-..|.++++.+++-..--++
T Consensus 371 ~Ll~e~~gki~~~~l~Nr~Peisw 394 (733)
T COG4590 371 YLLSEDQGKIRLAQLENRNPEISW 394 (733)
T ss_pred hheeecCCceEEEEecCCCCCccH
Confidence 999988899999998875543333
No 428
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=94.68 E-value=7.6 Score=41.80 Aligned_cols=188 Identities=14% Similarity=0.170 Sum_probs=105.7
Q ss_pred EEEEEcCCCcEEEEeCCCcceeeecCCccCEEEEeccc--cCCceE--EEEEe-cC---CeEEEEEcCCCCcee-eecC-
Q 001790 467 CVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHH--KENIQF--IFSTA-ID---GKIKAWLYDTMGSRV-DYDA- 536 (1012)
Q Consensus 467 ~l~s~~~d~~v~vwd~~~~~~~~~~~h~~~v~~~~~~~--~~~~~~--l~s~~-~d---g~i~~wd~~~~~~~~-~~~~- 536 (1012)
+++....++-+.+||.+|+.++.+.. +.++.+.+.. .-+|+. |+.++ .+ .+|++|.++...... .+..
T Consensus 70 lIigTdK~~GL~VYdL~Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~~ 147 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDLDGKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTDP 147 (381)
T ss_dssp EEEEEETTTEEEEEETTS-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CBT
T ss_pred eEEEEeCCCCEEEEcCCCcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCCC
Confidence 67777778899999999999988852 3344433211 112222 34443 22 579999886433222 2211
Q ss_pred ------CCCcEEEEEEc--c-CCCeEEEeeecCCCCCcEEEEeCC---CC----eeeeeecCCCCCcceEEEEecCCCEE
Q 001790 537 ------PGHWCTTMLYS--A-DGSRLFSCGTSKDGDSFLVEWNES---EG----TIKRTYAGFRKKSNGVVQFDTTQNHF 600 (1012)
Q Consensus 537 ------~~~~v~~~~~s--~-~~~~l~~~~~~~~~~~~i~lwd~~---~~----~~~~~~~~~~~~~v~~~~~s~~~~~l 600 (1012)
....+..+|+- + +|.+.+.... .+|.+..|-+. .+ +.++.|.... .+..|........|
T Consensus 148 ~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~---k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--Q~EGCVVDDe~g~L 222 (381)
T PF02333_consen 148 AAPIATDLSEPYGLCLYRSPSTGALYAFVNG---KDGRVEQYELTDDGDGKVSATLVREFKVGS--QPEGCVVDDETGRL 222 (381)
T ss_dssp TC-EE-SSSSEEEEEEEE-TTT--EEEEEEE---TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS---EEEEEEETTTTEE
T ss_pred CcccccccccceeeEEeecCCCCcEEEEEec---CCceEEEEEEEeCCCCcEeeEEEEEecCCC--cceEEEEecccCCE
Confidence 11246667663 3 4665544443 46777766553 33 4577776543 57788888888999
Q ss_pred EEEeCCCcEEEEeCCC-----CeeEEEEecCCCCCCcceeEeec--CC-CEEEEEE-CCCcEEEEEccCC
Q 001790 601 LAVGEDSQIKFWDMDN-----VNILTSTDAEGGLPNLPRLRFSK--EG-NLLAVTT-ADNGFKILANAIG 661 (1012)
Q Consensus 601 ~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~v~~s~--~g-~~l~~~~-~dg~i~iwd~~~~ 661 (1012)
+.+-++--|.-|+.+. +..+.......-...|-.+++-. ++ .+|++.+ .+++..+|+....
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999998888888752 22232222222334566777643 33 2444444 4678999997654
No 429
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.65 E-value=0.11 Score=49.89 Aligned_cols=100 Identities=15% Similarity=0.223 Sum_probs=60.7
Q ss_pred EEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEE-EEEccCCCEEEEEECCCeEEEEeecC
Q 001790 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR-VAWSPDGNYVGVAFTKHLIQLYSYAG 437 (1012)
Q Consensus 359 llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-v~~spdg~~las~~~d~~v~vwd~~~ 437 (1012)
-+++|+.+|.|.+|++.....+.. .+..-...|.+ |.--.++.+..+++.||.|+.|+++-
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d------------------~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p 133 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSD------------------RVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP 133 (238)
T ss_pred eEEeecccceEEEecCCccchHHH------------------hhhcccccceeccccccccceeEEeccCCceeeecccc
Confidence 488899999999999863222111 01112233333 33334667888999999999999988
Q ss_pred CCcceeeeeeeccc-cCeEEEEEeCCCCceEEEEE--cCCCcEEEEe
Q 001790 438 SNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTC--GDDKLIKVWE 481 (1012)
Q Consensus 438 ~~~~~~~~~l~~h~-~~v~~l~~s~~~~~~~l~s~--~~d~~v~vwd 481 (1012)
++.+. ....|. .++.....+..++ +++.+ |.|..++.|+
T Consensus 134 ~k~~g---~~g~h~~~~~e~~ivv~sd~--~i~~a~~S~d~~~k~W~ 175 (238)
T KOG2444|consen 134 NKVLG---YVGQHNFESGEELIVVGSDE--FLKIADTSHDRVLKKWN 175 (238)
T ss_pred Cceee---eeccccCCCcceeEEecCCc--eEEeeccccchhhhhcc
Confidence 76554 233455 4455554444455 44444 5566666666
No 430
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=94.63 E-value=9.1 Score=42.46 Aligned_cols=276 Identities=13% Similarity=0.073 Sum_probs=135.5
Q ss_pred cCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE
Q 001790 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1012)
Q Consensus 342 ~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 421 (1012)
.-...|.++.|.-.|. +-.|+.|| +..||..+++.+.... .+ ...+|..+.-+-.| .|
T Consensus 162 l~d~~V~aLv~D~~g~--lWvgT~dG-L~~fd~~~gkalql~s----------~~--------~dk~I~al~~d~qg-~L 219 (671)
T COG3292 162 LKDTPVVALVFDANGR--LWVGTPDG-LSYFDAGRGKALQLAS----------PP--------LDKAINALIADVQG-RL 219 (671)
T ss_pred ccCccceeeeeeccCc--EEEecCCc-ceEEccccceEEEcCC----------Cc--------chhhHHHHHHHhcC-cE
Confidence 3456899999999997 45667666 5566777777654211 00 12355555555455 45
Q ss_pred EEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEeCCCcceee-ecCCc--cCEE
Q 001790 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN-FEGHE--APVY 498 (1012)
Q Consensus 422 as~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd~~~~~~~~-~~~h~--~~v~ 498 (1012)
.+|+.+| |.+.+.++.+..... ..-..+.|..+.-..+|. +-.|+..|..+.=-..+..... .+-|. ..|.
T Consensus 220 WVGTdqG-v~~~e~~G~~~sn~~--~~lp~~~I~ll~qD~qG~---lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vn 293 (671)
T COG3292 220 WVGTDQG-VYLQEAEGWRASNWG--PMLPSGNILLLVQDAQGE---LWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVN 293 (671)
T ss_pred EEEeccc-eEEEchhhccccccC--CCCcchheeeeecccCCC---EEEeecccceeEecCCCCccccccccCCcccccc
Confidence 6787777 777776652211100 011233444444444444 3344444432211122222211 12222 2344
Q ss_pred EEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEcc--CCCeEEEeeecCCCCCcEEEEeCCCCee
Q 001790 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA--DGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (1012)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~i~lwd~~~~~~ 576 (1012)
++.. +.+| -+-+++.+|.+++-+.+-..........+..+...+..| .+..+-... ..+.+.+-+-.+|..
T Consensus 294 sL~~--D~dG-sLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~n----s~g~L~van~stG~~ 366 (671)
T COG3292 294 SLWL--DTDG-SLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLN----SIGELMVANGSTGEL 366 (671)
T ss_pred ceee--ccCC-CEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeecc----ccceEEEecCCCCcE
Confidence 4433 3344 356667676665543221111111111111111222222 111111111 133455556666776
Q ss_pred eeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCC-CeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEE
Q 001790 577 KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655 (1012)
Q Consensus 577 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~i 655 (1012)
+..........|+..++.. +..+-.|+...-+..|+.++ +......... ..++|..+.-.|+++ |..|+.+|.++.
T Consensus 367 v~sv~q~Rg~nit~~~~d~-~g~lWlgs~q~GLsrl~n~n~~avlde~agl-~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 367 VRSVHQLRGMNITTTLEDS-RGRLWLGSMQNGLSRLDNKNEWAVLDEDAGL-PSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred EEEeeeccccccchhhhcc-CCcEEEEecccchhhhccCCcccccccccCC-cccceeeeeecCCCC-EEEeccCCeEec
Confidence 6665555555677777776 44556666664566677666 3333333222 234677888788887 778888877654
No 431
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.52 E-value=2.6 Score=44.96 Aligned_cols=116 Identities=11% Similarity=0.200 Sum_probs=78.3
Q ss_pred CCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001790 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1012)
Q Consensus 343 h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 422 (1012)
..++|.++.||+|.+ ++|+--.+++|.+.+....+...... ...+.....|....|+.+ .-+|
T Consensus 65 d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~---------------~~ck~k~~~IlGF~W~~s-~e~A 127 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYT---------------QECKTKNANILGFCWTSS-TEIA 127 (657)
T ss_pred CCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHH---------------HHhccCcceeEEEEEecC-eeEE
Confidence 567999999999999 89999999999999984333221110 012234556899999865 6677
Q ss_pred EEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEE
Q 001790 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1012)
Q Consensus 423 s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~ 478 (1012)
.....| +.+|.....+ +.....+.|...|.--.|.++..-.+++|+-..+++.
T Consensus 128 ~i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~ln 180 (657)
T KOG2377|consen 128 FITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLN 180 (657)
T ss_pred EEecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeeccccccccc
Confidence 776666 7788766532 2222455788899999999998843344442344443
No 432
>PHA03098 kelch-like protein; Provisional
Probab=94.31 E-value=1.8 Score=50.66 Aligned_cols=147 Identities=13% Similarity=0.062 Sum_probs=76.9
Q ss_pred eeCCCEEEEEc-C-----CcEEEEEcCCCeEEEEEcCCCCC-eeEEEEecCCCcEEEEEeCC------CeEEEEEccCCe
Q 001790 840 SKNDSYVMSAT-G-----GKISLFNMMTFKVMTTFMSPPPA-STFLAFHPQDNNIIAIGTED------STIHIYNVRVDE 906 (1012)
Q Consensus 840 s~dg~~la~~s-d-----g~i~lwd~~~~~~~~~~~~~~~~-i~~l~~sp~d~~~las~~~d------g~v~iwd~~~~~ 906 (1012)
.-+++..+.|+ + ..+..||..+.+-...-.-+... -.+++. - ++++.+.|+.+ +.+..||..+++
T Consensus 340 ~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~-~-~~~iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 340 VFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN-V-NNLIYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred EECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE-E-CCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence 34677777776 3 24788888776543221111111 112222 2 66777777732 368899987654
Q ss_pred EeE--EecccCCCeEEEEEcCCCCEEEEEeCCC--------cEEEEeCCCCCccccEEEecCCCCCCCCceEEEEcCCCC
Q 001790 907 VKS--KLKGHQKRITGLAFSTSLNILVSSGADA--------QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQV 976 (1012)
Q Consensus 907 ~~~--~~~~h~~~V~~l~~spdg~~l~s~s~Dg--------~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~ 976 (1012)
-.. .+....... + +...++++.+.||.++ .+.+||..+++.........+. .....+.+ +++
T Consensus 418 W~~~~~~p~~r~~~-~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r----~~~~~~~~--~~~ 489 (534)
T PHA03098 418 WSKGSPLPISHYGG-C-AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPR----INASLCIF--NNK 489 (534)
T ss_pred eeecCCCCccccCc-e-EEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCccc----ccceEEEE--CCE
Confidence 322 111111111 1 2223566777776532 3889999887654322111111 11122222 677
Q ss_pred EEEEEe------CCeEEEEECCCceE
Q 001790 977 RMLVVH------ETQLAIYDASKMER 996 (1012)
Q Consensus 977 ~l~~~~------d~~i~vwd~~~~~~ 996 (1012)
.++.|+ .+.+.+||.++.+-
T Consensus 490 iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 490 IYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred EEEEcCCcCCcccceeEEEeCCCCEE
Confidence 777763 24799999887653
No 433
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=94.11 E-value=5.3 Score=43.85 Aligned_cols=146 Identities=11% Similarity=0.086 Sum_probs=88.3
Q ss_pred EeEEEEeeCCCEEEEEcCCcEEE-EEcCCCeE--EEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCe----
Q 001790 834 VPCIALSKNDSYVMSATGGKISL-FNMMTFKV--MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE---- 906 (1012)
Q Consensus 834 v~~~~~s~dg~~la~~sdg~i~l-wd~~~~~~--~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~---- 906 (1012)
...+..++||.+++++..|.+.. ||- |.. ...-......++.+.+.+ ++.+++++ .+|.+. |....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~-dg~l~l~g-~~G~l~-~S~d~G~~~~~ 315 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRA-DGGLWLLT-RGGGLY-VSKGTGLTEED 315 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcC-CCCEEEEe-CCceEE-EecCCCCcccc
Confidence 45567789999999998776443 443 221 112222345688999998 77777654 566644 3444443
Q ss_pred -EeEEecc--cCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCccccEEEecCCCCCCCCceEEEEcCCCCEEEEEeC
Q 001790 907 -VKSKLKG--HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHE 983 (1012)
Q Consensus 907 -~~~~~~~--h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~d 983 (1012)
....... -...+..+.|.+++..++ ++.+|.+.... +.|+. ................+.|.++++-+++|.+
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a-~G~~G~v~~s~-D~G~t---W~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~ 390 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYRSKKEAWA-AGGSGILLRST-DGGKS---WKRDKGADNIAANLYSVKFFDDKKGFVLGND 390 (398)
T ss_pred cceeecccCCCCcceEEEEEcCCCcEEE-EECCCcEEEeC-CCCcc---eeEccccCCCCcceeEEEEcCCCceEEEeCC
Confidence 2222221 123588999998877665 55677666553 44442 1111101111256789999999999999999
Q ss_pred CeEEEE
Q 001790 984 TQLAIY 989 (1012)
Q Consensus 984 ~~i~vw 989 (1012)
|.|.-|
T Consensus 391 G~il~~ 396 (398)
T PLN00033 391 GVLLRY 396 (398)
T ss_pred cEEEEe
Confidence 887765
No 434
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.05 E-value=1.6 Score=47.96 Aligned_cols=140 Identities=15% Similarity=0.142 Sum_probs=80.9
Q ss_pred CCEeEEEEeeCCCEEEEEc------------CC-cEEEEEcCCC--e--EEEEEcCCCCCeeEEEEecCCCcEEEEEeCC
Q 001790 832 EAVPCIALSKNDSYVMSAT------------GG-KISLFNMMTF--K--VMTTFMSPPPASTFLAFHPQDNNIIAIGTED 894 (1012)
Q Consensus 832 ~~v~~~~~s~dg~~la~~s------------dg-~i~lwd~~~~--~--~~~~~~~~~~~i~~l~~sp~d~~~las~~~d 894 (1012)
.....|+|.++|+++++-. .+ .|.+++-.++ + ....+.........+++.+ ++ +++ ++..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCC
Confidence 3456789999999887752 23 6777765432 2 2234443444568899998 77 444 3444
Q ss_pred CeEEEEEccCC-----e--Ee-EEecc----cCCCeEEEEEcCCCCEEEEEeCC-------------------CcEEEEe
Q 001790 895 STIHIYNVRVD-----E--VK-SKLKG----HQKRITGLAFSTSLNILVSSGAD-------------------AQLCVWS 943 (1012)
Q Consensus 895 g~v~iwd~~~~-----~--~~-~~~~~----h~~~V~~l~~spdg~~l~s~s~D-------------------g~i~vwd 943 (1012)
...++.|.... + .+ ..+.. +......++|.|||.+.++.+.. |.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 33334344321 1 12 22322 23447789999999987766521 3455555
Q ss_pred CCCCCccccEEEecCCCCCCCCceEEEEcCCCCEEEEE
Q 001790 944 IDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV 981 (1012)
Q Consensus 944 ~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~ 981 (1012)
.++++.. .+ ..+. .....++|+++|+++++-
T Consensus 171 pdg~~~e---~~--a~G~--rnp~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 171 PDGGKLR---VV--AHGF--QNPYGHSVDSWGDVFFCD 201 (367)
T ss_pred cCCCeEE---EE--ecCc--CCCccceECCCCCEEEEc
Confidence 5554421 11 1222 345789999999988764
No 435
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=94.00 E-value=18 Score=43.37 Aligned_cols=70 Identities=10% Similarity=0.145 Sum_probs=47.6
Q ss_pred cceEEEEecCC------CEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeec---CCC------EEEEEECCC
Q 001790 587 SNGVVQFDTTQ------NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK---EGN------LLAVTTADN 651 (1012)
Q Consensus 587 ~v~~~~~s~~~------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---~g~------~l~~~~~dg 651 (1012)
.+.|+++.++. ++++.++.|+.++++.+.....+..+...+-..++.++.+-+ ++. +|-+|-.+|
T Consensus 584 ~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NG 663 (1205)
T KOG1898|consen 584 DVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNG 663 (1205)
T ss_pred eehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEeccccc
Confidence 57778887764 578899999999999998888888777665544555554433 332 445666666
Q ss_pred cEEEE
Q 001790 652 GFKIL 656 (1012)
Q Consensus 652 ~i~iw 656 (1012)
.+.-+
T Consensus 664 vllR~ 668 (1205)
T KOG1898|consen 664 VLLRF 668 (1205)
T ss_pred EEEEE
Confidence 65444
No 436
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.88 E-value=9.7 Score=39.91 Aligned_cols=283 Identities=10% Similarity=0.061 Sum_probs=126.4
Q ss_pred ecCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCE
Q 001790 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1012)
Q Consensus 341 ~~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 420 (1012)
++-...+..|+|..+.. -.++|. .+. |+...+|...-. .... ..-..-.-...+|.|..+ ..
T Consensus 13 l~t~~~l~dV~F~d~~~-G~~VG~-~g~--il~T~DGG~tW~-------~~~~------~~~~~~~~~l~~I~f~~~-~g 74 (302)
T PF14870_consen 13 LPTDKPLLDVAFVDPNH-GWAVGA-YGT--ILKTTDGGKTWQ-------PVSL------DLDNPFDYHLNSISFDGN-EG 74 (302)
T ss_dssp -S-SS-EEEEEESSSS--EEEEET-TTE--EEEESSTTSS-E-------E-----------S-----EEEEEEEETT-EE
T ss_pred cCCCCceEEEEEecCCE-EEEEec-CCE--EEEECCCCcccc-------cccc------CCCccceeeEEEEEecCC-ce
Confidence 44455899999995554 577776 453 455555443221 0000 000000123567777643 34
Q ss_pred EEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEeCCCccee-eecCCccCEEE
Q 001790 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLF-NFEGHEAPVYS 499 (1012)
Q Consensus 421 las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd~~~~~~~-~~~~h~~~v~~ 499 (1012)
+++| ..+ +.+...+.|+.-.....-..-.+....+....++. ..+.+ ..|.|..=...|+.-. ....-.+.+..
T Consensus 75 ~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~--~~l~~-~~G~iy~T~DgG~tW~~~~~~~~gs~~~ 149 (302)
T PF14870_consen 75 WIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGS--AELAG-DRGAIYRTTDGGKTWQAVVSETSGSIND 149 (302)
T ss_dssp EEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTE--EEEEE-TT--EEEESSTTSSEEEEE-S----EEE
T ss_pred EEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCc--EEEEc-CCCcEEEeCCCCCCeeEcccCCcceeEe
Confidence 4444 455 44555555654443211011223334444444443 33333 3455443333343322 23334456777
Q ss_pred EeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEe-CCCCeeee
Q 001790 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN-ESEGTIKR 578 (1012)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd-~~~~~~~~ 578 (1012)
+.. .++|.+++++..-....-||--...-..........|.+|.|+|++...+.+ +.+.|+.=+ ....+.-.
T Consensus 150 ~~r--~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-----~Gg~~~~s~~~~~~~~w~ 222 (302)
T PF14870_consen 150 ITR--SSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-----RGGQIQFSDDPDDGETWS 222 (302)
T ss_dssp EEE---TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-----TTTEEEEEE-TTEEEEE-
T ss_pred EEE--CCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-----CCcEEEEccCCCCccccc
Confidence 654 4577888777666666677643222233333456789999999998876655 377777766 22222111
Q ss_pred e--ecC-CCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEec-CCCCCCcceeEeecCCCEEEEEECCCcEE
Q 001790 579 T--YAG-FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA-EGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (1012)
Q Consensus 579 ~--~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~s~~g~~l~~~~~dg~i~ 654 (1012)
. ... .....+..+++.+++...++|+ .|.+. .....|+.-..... ..-...+..+.|.++.+-++. +.+|.+.
T Consensus 223 ~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G~ll 299 (302)
T PF14870_consen 223 EPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDGVLL 299 (302)
T ss_dssp --B-TTSS--S-EEEEEESSSS-EEEEES-TT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEE
T ss_pred cccCCcccCceeeEEEEecCCCCEEEEeC-CccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEE-CCCcEEE
Confidence 1 111 1222367789998866666554 55443 45566666555543 222335788888876555555 4567765
Q ss_pred EE
Q 001790 655 IL 656 (1012)
Q Consensus 655 iw 656 (1012)
-|
T Consensus 300 ~~ 301 (302)
T PF14870_consen 300 RY 301 (302)
T ss_dssp EE
T ss_pred Ee
Confidence 44
No 437
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.81 E-value=1.5 Score=50.29 Aligned_cols=111 Identities=13% Similarity=0.159 Sum_probs=73.3
Q ss_pred CeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeec-CCccCEEEEeccccCCceEEEEEecCCeEEEEEcC----
Q 001790 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD---- 526 (1012)
Q Consensus 453 ~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~---- 526 (1012)
...-+.-|.-++ ..+..+....+.||| ..+.....-. ...+.|..+.|...++++.+++.|..+.|.++.-.
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 344444555555 334444456899999 5554332211 34788999999999999999999999999998431
Q ss_pred -CCCc----ee--eecC-CCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeC
Q 001790 527 -TMGS----RV--DYDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1012)
Q Consensus 527 -~~~~----~~--~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~ 571 (1012)
...+ .. .+.. ..++|....|.++|..++.+ ++.+.++|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s------GNqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS------GNQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe------CCEEEEECC
Confidence 1111 11 1222 33678999999999877765 456888874
No 438
>PHA03098 kelch-like protein; Provisional
Probab=93.74 E-value=3.4 Score=48.33 Aligned_cols=152 Identities=7% Similarity=-0.012 Sum_probs=71.9
Q ss_pred CceEEEEEecC-----CeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCC--CCcEEEEeCCCCeeeee
Q 001790 507 NIQFIFSTAID-----GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG--DSFLVEWNESEGTIKRT 579 (1012)
Q Consensus 507 ~~~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~--~~~i~lwd~~~~~~~~~ 579 (1012)
++.+++.||.+ ..+..||..+..-...-..........+..-+++..+.||..... -..+..||..+++....
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 44677777765 346667766543222111111111111122356666666632111 24688899887654332
Q ss_pred ecCCCCCcceEEEEecCCCEEEEEeCC--------CcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECC-
Q 001790 580 YAGFRKKSNGVVQFDTTQNHFLAVGED--------SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD- 650 (1012)
Q Consensus 580 ~~~~~~~~v~~~~~s~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d- 650 (1012)
-..... .....+...++...+.||.+ ..+.+||..+++....-..... ....-...-+++.++.|+.+
T Consensus 422 ~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~--r~~~~~~~~~~~iyv~GG~~~ 498 (534)
T PHA03098 422 SPLPIS-HYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP--RINASLCIFNNKIYVVGGDKY 498 (534)
T ss_pred CCCCcc-ccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc--cccceEEEECCEEEEEcCCcC
Confidence 211111 11112223345555666532 2388899887654432221111 11111122367777777654
Q ss_pred ----CcEEEEEccCC
Q 001790 651 ----NGFKILANAIG 661 (1012)
Q Consensus 651 ----g~i~iwd~~~~ 661 (1012)
+.+.+||..+.
T Consensus 499 ~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 499 EYYINEIEVYDDKTN 513 (534)
T ss_pred CcccceeEEEeCCCC
Confidence 35777777654
No 439
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.64 E-value=1.2 Score=52.87 Aligned_cols=153 Identities=10% Similarity=0.098 Sum_probs=87.2
Q ss_pred CceEEEEEecCcceEEEeec--cCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeC
Q 001790 765 SKVVRLLYTNSAVGLLALGS--NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1012)
Q Consensus 765 ~~i~~l~~s~~g~~l~~~~~--dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1012)
..|..+...+|+...++... +-.|..||+..-..... .+..++...-..........++.|.|.
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~--------------~~~~pl~~s~ts~ek~vf~~~~~wnP~ 166 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRY--------------ETTVPLKNSATSFEKPVFQLKNVWNPL 166 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhh--------------hhccccccccchhccccccccccccCC
Confidence 35566667777665554443 33677787764221110 001111111111113334556667664
Q ss_pred C--CEEEEEcCCcEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeEEecc----cCC
Q 001790 843 D--SYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKG----HQK 916 (1012)
Q Consensus 843 g--~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~~~~----h~~ 916 (1012)
- ..+++..|+.|++..+........--.-....++++|+| .|+.++.|...|++.-|... ++....+.+ ...
T Consensus 167 vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~y 244 (1405)
T KOG3630|consen 167 VPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENY 244 (1405)
T ss_pred ccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEecc-ccceeeEecCCCeEEEeecc-cceeecccCCCcCCCc
Confidence 3 334444588888877653322211112344689999999 99999999999999988743 333333321 246
Q ss_pred CeEEEEEcCCCCEEEEE
Q 001790 917 RITGLAFSTSLNILVSS 933 (1012)
Q Consensus 917 ~V~~l~~spdg~~l~s~ 933 (1012)
.|.+|+|-....++++-
T Consensus 245 rvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 245 RVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred ceeEEEEecceeEEEEe
Confidence 89999999877777754
No 440
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=93.53 E-value=24 Score=43.30 Aligned_cols=26 Identities=12% Similarity=-0.027 Sum_probs=18.6
Q ss_pred CCCceEEEEEecCcceEEEeeccCee
Q 001790 763 TSSKVVRLLYTNSAVGLLALGSNGVQ 788 (1012)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~i 788 (1012)
+-+.+.+++++|||..+++-..+-.|
T Consensus 660 ~lnsp~alaVsPdg~v~IAD~gN~rI 685 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVIIADSGNSRI 685 (1899)
T ss_pred ccCCcceEEECCCCcEEEecCCchhh
Confidence 55678899999999877665444333
No 441
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.45 E-value=0.083 Score=60.26 Aligned_cols=132 Identities=14% Similarity=0.137 Sum_probs=69.6
Q ss_pred EeEEEEeeCCCEEEEEc-CCcEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeEEec
Q 001790 834 VPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK 912 (1012)
Q Consensus 834 v~~~~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~~~ 912 (1012)
|..+-|-++.-++..+. ++++++.++.+... ..+.+|...++.++|-. .|-+++ .+
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~-~g~~~l-~~-------------------- 242 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFA-EGVLKL-AS-------------------- 242 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHh-hchhhh-ee--------------------
Confidence 33334445666666666 67887776654332 45567888888887765 332222 11
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCccccEEEecCCCCCCCCceEEEEcCC-------C--CEEEEEe-
Q 001790 913 GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD-------Q--VRMLVVH- 982 (1012)
Q Consensus 913 ~h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d-------~--~~l~~~~- 982 (1012)
.||||+.+|.+..||.++.|.+.-.......+++....|...+-.+..|... + .+++++.
T Consensus 243 ----------lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd 312 (1283)
T KOG1916|consen 243 ----------LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTD 312 (1283)
T ss_pred ----------eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEeccc
Confidence 6777777777777777777765422111122233333322111111112211 1 2344443
Q ss_pred -CCeEEEEECCCceEEE
Q 001790 983 -ETQLAIYDASKMERIR 998 (1012)
Q Consensus 983 -d~~i~vwd~~~~~~~~ 998 (1012)
+..+++|....++++.
T Consensus 313 ~nre~k~w~~a~w~Cll 329 (1283)
T KOG1916|consen 313 VNREEKFWAEAPWQCLL 329 (1283)
T ss_pred CCcceeEeeccchhhhh
Confidence 4578888887777763
No 442
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.18 E-value=15 Score=43.67 Aligned_cols=96 Identities=7% Similarity=0.138 Sum_probs=53.4
Q ss_pred CcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEeCCCc
Q 001790 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (1012)
Q Consensus 406 ~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd~~~~ 485 (1012)
.-.|..|.+||+|++||..|..| |.|-.+... ......+.+-...|.|=.+.=+.. +..
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r--~g~~~~~~~g~~~i~Crt~~v~~~---~~~--------------- 142 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRR--WGKNGEFEDGKKEINCRTVPVDER---FFT--------------- 142 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccc--cCccccccCCCcceeEEEEEechh---hcc---------------
Confidence 45789999999999999998877 445444320 000001222222333322222221 111
Q ss_pred ceeeecCCccCEEEEeccccC-CceEEEEEecCCeEEEEEcCC
Q 001790 486 KLFNFEGHEAPVYSICPHHKE-NIQFIFSTAIDGKIKAWLYDT 527 (1012)
Q Consensus 486 ~~~~~~~h~~~v~~~~~~~~~-~~~~l~s~~~dg~i~~wd~~~ 527 (1012)
..+...|..+.|||.. ++..|+.-..|+++|+||+..
T Consensus 143 -----~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 143 -----SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred -----CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 1123456677777754 345677777788888888764
No 443
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.57 E-value=5.7 Score=38.54 Aligned_cols=153 Identities=11% Similarity=0.198 Sum_probs=86.6
Q ss_pred eEEEEeeCCCEEEEEcCCcEEEEEcC--CCeEEEEEcCCCCCeeEEEEecCCCcEEEEEeCCC------eEEEE---Ecc
Q 001790 835 PCIALSKNDSYVMSATGGKISLFNMM--TFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS------TIHIY---NVR 903 (1012)
Q Consensus 835 ~~~~~s~dg~~la~~sdg~i~lwd~~--~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg------~v~iw---d~~ 903 (1012)
..++-+..+.++++++.++|.+|++. ..+.+.+|..- +.|..++++. .|.+|++--++. .+|+| +..
T Consensus 21 ~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~ 98 (215)
T PF14761_consen 21 TAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQ 98 (215)
T ss_pred ceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhh
Confidence 33444443344444567889999987 44566666643 7899999999 899999865433 45554 322
Q ss_pred --CCeEeE-Eeccc---------------------CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCc-cccE-EEe-
Q 001790 904 --VDEVKS-KLKGH---------------------QKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEK-RKSV-TIH- 956 (1012)
Q Consensus 904 --~~~~~~-~~~~h---------------------~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~~-~~~~-~~~- 956 (1012)
..+++. .+-|| ...+.+++..|-..-|+.|+ ++.+.+|.+..... .... .+.
T Consensus 99 ~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDF 177 (215)
T PF14761_consen 99 KEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDF 177 (215)
T ss_pred cccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEec
Confidence 111211 22232 23566777776443444455 45799998865332 1100 011
Q ss_pred ---cCCCCCCCCceEEEEcCCCCEEEEEeCCeEEEEECC
Q 001790 957 ---IPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDAS 992 (1012)
Q Consensus 957 ---~~~~~~~~~v~~l~fs~d~~~l~~~~d~~i~vwd~~ 992 (1012)
...-+..-.+..++|. +.|+|..++..++|..+.
T Consensus 178 e~~l~~~~~~~~p~~v~ic--~~yiA~~s~~ev~Vlkl~ 214 (215)
T PF14761_consen 178 ERSLIDHIDNFKPTQVAIC--EGYIAVMSDLEVLVLKLE 214 (215)
T ss_pred hhhhhheecCceEEEEEEE--eeEEEEecCCEEEEEEEe
Confidence 0111111223445554 778888888888888764
No 444
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=92.48 E-value=6.8 Score=43.65 Aligned_cols=116 Identities=13% Similarity=0.160 Sum_probs=75.0
Q ss_pred CCCCEeEEEEeeCC-----CEEEEEcCCcEEEEEcC-----CCeEEEEEcCCC-C----CeeEEEEecCCCcEEEEEeCC
Q 001790 830 LEEAVPCIALSKND-----SYVMSATGGKISLFNMM-----TFKVMTTFMSPP-P----ASTFLAFHPQDNNIIAIGTED 894 (1012)
Q Consensus 830 ~~~~v~~~~~s~dg-----~~la~~sdg~i~lwd~~-----~~~~~~~~~~~~-~----~i~~l~~sp~d~~~las~~~d 894 (1012)
.-..|..+.|+|-+ .+||+-....|.+|.+. ..+.+..-..+- . -...+.|+| ...+|++-...
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~ 133 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTAR 133 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecC
Confidence 45668889998853 47777778889999875 223222211111 1 124577999 78888877766
Q ss_pred CeEEEEEccC--CeEeEEecccCCCeEEEEEcCCCCEEEEEeC-CCcEEEEeCCCC
Q 001790 895 STIHIYNVRV--DEVKSKLKGHQKRITGLAFSTSLNILVSSGA-DAQLCVWSIDTW 947 (1012)
Q Consensus 895 g~v~iwd~~~--~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~-Dg~i~vwd~~~~ 947 (1012)
..-.++++.. .+....++ -.+.|.|.+|.+||++|+.+-. .=.-+|||=...
T Consensus 134 dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 134 DVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred ceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 6555666653 23334454 5588999999999998876543 334689986553
No 445
>PRK13684 Ycf48-like protein; Provisional
Probab=92.45 E-value=18 Score=39.00 Aligned_cols=278 Identities=10% Similarity=0.048 Sum_probs=131.4
Q ss_pred CCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEE
Q 001790 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1012)
Q Consensus 344 ~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 423 (1012)
...+.+++|..+.. .+|+|. +|. ||...++..-.+ ..... +......+.++.|.++ ..+++
T Consensus 45 ~~~l~~v~F~d~~~-g~avG~-~G~--il~T~DgG~tW~-------~~~~~-------~~~~~~~l~~v~~~~~-~~~~~ 105 (334)
T PRK13684 45 EANLLDIAFTDPNH-GWLVGS-NRT--LLETNDGGETWE-------ERSLD-------LPEENFRLISISFKGD-EGWIV 105 (334)
T ss_pred CCceEEEEEeCCCc-EEEEEC-CCE--EEEEcCCCCCce-------ECccC-------CcccccceeeeEEcCC-cEEEe
Confidence 45899999985555 677775 443 444444332211 10000 1012234677888654 34444
Q ss_pred EECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEeCCCcceeeec-CCccCEEEEec
Q 001790 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSICP 502 (1012)
Q Consensus 424 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~h~~~v~~~~~ 502 (1012)
| ..+.|.. .-+.|+.......-....+....+....++. .++. +..|.|..=+..|+.-..+. .-...+..+.+
T Consensus 106 G-~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~-g~~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~ 180 (334)
T PRK13684 106 G-QPSLLLH-TTDGGKNWTRIPLSEKLPGSPYLITALGPGT--AEMA-TNVGAIYRTTDGGKNWEALVEDAAGVVRNLRR 180 (334)
T ss_pred C-CCceEEE-ECCCCCCCeEccCCcCCCCCceEEEEECCCc--ceee-eccceEEEECCCCCCceeCcCCCcceEEEEEE
Confidence 4 4453222 2233333332110000111122222222232 2333 33454433333343322222 22456777777
Q ss_pred cccCCceEEEEEecCCeEEEEEcCCCCcee--eecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeee
Q 001790 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRV--DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1012)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~ 580 (1012)
.+ ++.++ ..+..|.+.. ..+.+.... ........++++.+.++++.++++. .|.+.+=....|..-...
T Consensus 181 ~~--~g~~v-~~g~~G~i~~-s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-----~G~~~~~s~d~G~sW~~~ 251 (334)
T PRK13684 181 SP--DGKYV-AVSSRGNFYS-TWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-----GGQIRFNDPDDLESWSKP 251 (334)
T ss_pred CC--CCeEE-EEeCCceEEE-EcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-----CCEEEEccCCCCCccccc
Confidence 54 44444 4445565542 112222222 2223445789999999998877764 555543223333322211
Q ss_pred cCC---CCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEec-CCCCCCcceeEeecCCCEEEEEECCCcEEEE
Q 001790 581 AGF---RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA-EGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (1012)
Q Consensus 581 ~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw 656 (1012)
... ....+..+.+.+++.. ++++.+|.+. .....++....... ..-......+.|..+++.+++ +..|.|--|
T Consensus 252 ~~~~~~~~~~l~~v~~~~~~~~-~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~ 328 (334)
T PRK13684 252 IIPEITNGYGYLDLAYRTPGEI-WAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRY 328 (334)
T ss_pred cCCccccccceeeEEEcCCCCE-EEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCCceEEEe
Confidence 111 1124667888887664 5555677665 34455555444432 111124667777777666655 456777655
Q ss_pred E
Q 001790 657 A 657 (1012)
Q Consensus 657 d 657 (1012)
+
T Consensus 329 ~ 329 (334)
T PRK13684 329 V 329 (334)
T ss_pred c
Confidence 4
No 446
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.16 E-value=8.4 Score=41.41 Aligned_cols=150 Identities=13% Similarity=0.146 Sum_probs=88.9
Q ss_pred CCCCEeEEEEee-CCCEEEEEcCCc------EEEEEcCC--C--eEE-----EEEcCCCC--------CeeEEEEecCCC
Q 001790 830 LEEAVPCIALSK-NDSYVMSATGGK------ISLFNMMT--F--KVM-----TTFMSPPP--------ASTFLAFHPQDN 885 (1012)
Q Consensus 830 ~~~~v~~~~~s~-dg~~la~~sdg~------i~lwd~~~--~--~~~-----~~~~~~~~--------~i~~l~~sp~d~ 885 (1012)
.-+.++.+.+.+ +++++++..+|. +..+++.. + ..+ ..+....+ ..-.|++.+ ++
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g 96 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DG 96 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CC
Confidence 445678899984 566666666666 55555543 1 111 11111222 233678866 88
Q ss_pred cEEEEEeCC------CeEEEEEccCCeEeEEec---------------ccCCCeEEEEEcCCCCEEEEEeC-----CC--
Q 001790 886 NIIAIGTED------STIHIYNVRVDEVKSKLK---------------GHQKRITGLAFSTSLNILVSSGA-----DA-- 937 (1012)
Q Consensus 886 ~~las~~~d------g~v~iwd~~~~~~~~~~~---------------~h~~~V~~l~~spdg~~l~s~s~-----Dg-- 937 (1012)
.++++.-.+ -.|+.++.. |+.+..+. .......+|+++|||+.|+++.+ |+
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR 175 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence 888776666 678888866 65544431 13456789999999996666543 22
Q ss_pred c-------EEEEeCC--C-CCccccEEEecCCC---CCCCCceEEEEcCCCCEEEEE
Q 001790 938 Q-------LCVWSID--T-WEKRKSVTIHIPAG---KTPTGDTRVQFNADQVRMLVV 981 (1012)
Q Consensus 938 ~-------i~vwd~~--~-~~~~~~~~~~~~~~---~~~~~v~~l~fs~d~~~l~~~ 981 (1012)
. ++++..+ + ++....+......- .....|+.+.+-+|+++|+.=
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 1 4555444 4 33344444443320 022678999999999988773
No 447
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.11 E-value=0.47 Score=32.30 Aligned_cols=32 Identities=19% Similarity=0.304 Sum_probs=26.4
Q ss_pred CceEEEEEecCCC--cEEEEecCCCeEEEEEccC
Q 001790 345 STVISMDFHPSHQ--TLLLVGSSNGEITLWELAM 376 (1012)
Q Consensus 345 ~~V~~~~~spdg~--~llasg~~dg~v~iwd~~~ 376 (1012)
+.|.+|.|||... .+|+..-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4789999997543 4788887889999999985
No 448
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.08 E-value=3.4 Score=45.43 Aligned_cols=108 Identities=19% Similarity=0.170 Sum_probs=55.7
Q ss_pred CceEEEEEecCCCcEEEEec-----------CCC-eEEEEEccCCceecccccccccccccCccccceeccCCCcceEEE
Q 001790 345 STVISMDFHPSHQTLLLVGS-----------SNG-EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1012)
Q Consensus 345 ~~V~~~~~spdg~~llasg~-----------~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 412 (1012)
.....|+|.++|+ ++++-. ..+ .|.+++-.++.-... ...++...-.....+
T Consensus 14 ~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d---------------~~~vfa~~l~~p~Gi 77 (367)
T TIGR02604 14 RNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYD---------------KSNVFAEELSMVTGL 77 (367)
T ss_pred CCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcc---------------eeEEeecCCCCccce
Confidence 4678899999999 555432 223 677776543321110 001222233456789
Q ss_pred EEccCCCEEEEEECCCeEEEEeecCC-----Ccceeeeeeec----cccCeEEEEEeCCCCceEEEEE
Q 001790 413 AWSPDGNYVGVAFTKHLIQLYSYAGS-----NDLRQHSQIDA----HVGAVNDLAFAYPNKLLCVVTC 471 (1012)
Q Consensus 413 ~~spdg~~las~~~d~~v~vwd~~~~-----~~~~~~~~l~~----h~~~v~~l~~s~~~~~~~l~s~ 471 (1012)
++.++| +++ ++.....++.|.... +.......+.. +......++|.|||.- ++..+
T Consensus 78 ~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~L-Yv~~G 142 (367)
T TIGR02604 78 AVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWL-YFNHG 142 (367)
T ss_pred eEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCE-EEecc
Confidence 999998 444 444443334354321 11111111222 2345778999999972 44444
No 449
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.07 E-value=10 Score=44.23 Aligned_cols=115 Identities=8% Similarity=0.072 Sum_probs=75.3
Q ss_pred ceEEEEEcc--CCCEEEEEECCCeEEEEeecC-------C----------CcceeeeeeeccccCeEEEEEe--CCCCce
Q 001790 408 SVSRVAWSP--DGNYVGVAFTKHLIQLYSYAG-------S----------NDLRQHSQIDAHVGAVNDLAFA--YPNKLL 466 (1012)
Q Consensus 408 ~V~~v~~sp--dg~~las~~~d~~v~vwd~~~-------~----------~~~~~~~~l~~h~~~v~~l~~s--~~~~~~ 466 (1012)
.|..|.... +...|+.|..||.|.+|.+++ . ..+.....+. -...++.+++. ...+
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r-- 178 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR-- 178 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce--
Confidence 455555444 567899999999999997631 0 0011222222 34578999998 6666
Q ss_pred EEEEEcCCCcEEEEe--C-CCccee-eecCCccCEEEEeccccCC---c-eEEEEEecCCeEEEEEc
Q 001790 467 CVVTCGDDKLIKVWE--L-SGRKLF-NFEGHEAPVYSICPHHKEN---I-QFIFSTAIDGKIKAWLY 525 (1012)
Q Consensus 467 ~l~s~~~d~~v~vwd--~-~~~~~~-~~~~h~~~v~~~~~~~~~~---~-~~l~s~~~dg~i~~wd~ 525 (1012)
++|.++....|.||- . +.+... .-..|...|-+++|..... | ..+++++-.|.+.+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 888888888899887 3 122111 1112566788888876542 3 27888899999999887
No 450
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.02 E-value=5.3 Score=38.08 Aligned_cols=154 Identities=14% Similarity=0.087 Sum_probs=93.9
Q ss_pred CCCEEEEEc---CCcEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeEEecccCCCe
Q 001790 842 NDSYVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRI 918 (1012)
Q Consensus 842 dg~~la~~s---dg~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~~~~h~~~V 918 (1012)
||.++.+.+ ...|++||+.+|+.+..-.-....+..=-...-+..+.+-.-.+|.-.++|.++.+++..+. -.+.=
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence 555555544 35699999999988765443321111100111022333445578888999999988887765 22333
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCCccccEEEecCCCCCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCceEE
Q 001790 919 TGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKMERI 997 (1012)
Q Consensus 919 ~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~-~d~~i~vwd~~~~~~~ 997 (1012)
..++ .|+.-|+.++...+++.-|.++......+.+.. .+.....++.+.|- ||...+=. .+..|..-|.++|+++
T Consensus 134 WgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~-~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~ 209 (262)
T COG3823 134 WGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTD-DGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVV 209 (262)
T ss_pred eeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEE-CCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEE
Confidence 3433 466667777777788888888877666655543 23222455566665 55555444 5667777788888887
Q ss_pred Eee
Q 001790 998 RQV 1000 (1012)
Q Consensus 998 ~~~ 1000 (1012)
..+
T Consensus 210 ~wi 212 (262)
T COG3823 210 AWI 212 (262)
T ss_pred EEE
Confidence 766
No 451
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.70 E-value=7.8 Score=44.45 Aligned_cols=200 Identities=12% Similarity=0.047 Sum_probs=101.0
Q ss_pred CCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEeCCCcceeee----cCCccCEEEEec
Q 001790 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF----EGHEAPVYSICP 502 (1012)
Q Consensus 427 d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~----~~h~~~v~~~~~ 502 (1012)
--.|+|+++.+ ..+.. +.-..+.+..+.|+.+.. |+.-..||++++|+..|..+... ......|..+.+
T Consensus 63 ~~~I~If~~sG-~lL~~---~~w~~~~lI~mgWs~~ee---LI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~ 135 (829)
T KOG2280|consen 63 RPYIRIFNISG-QLLGR---ILWKHGELIGMGWSDDEE---LICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRF 135 (829)
T ss_pred ceeEEEEeccc-cchHH---HHhcCCCeeeecccCCce---EEEEeccceEEEeecchhhhcccccccccccCceeEEEE
Confidence 34588888765 33332 222233788999998776 77788899999999777666552 222233444444
Q ss_pred cccCCceEEEEEecCCeEEEEEcCCCCceeeecC-CCC--cEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCee-ee
Q 001790 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-PGH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI-KR 578 (1012)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-~~~--~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~-~~ 578 (1012)
.. +| ++.-..+|.+.+-.-........+.. +.. +..+-+..+++......- +-+..-...++....... ..
T Consensus 136 f~--~G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll-~v~~~v~~~~~q~~~~~~q~~ 210 (829)
T KOG2280|consen 136 FH--NG--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILL-DVDVAVGLHICQVEESRVQLH 210 (829)
T ss_pred ec--Cc--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEE-eechhhhhcccceeccccccc
Confidence 33 33 33334455554332111111111111 111 112222223322111000 000000011121211111 11
Q ss_pred eecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecC
Q 001790 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1012)
Q Consensus 579 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 640 (1012)
.+.... ..+..+.+||+.++|+--..+|.|.+-+....+....+....+. +...++|..+
T Consensus 211 ~~~~~~-~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wcgn 270 (829)
T KOG2280|consen 211 ALSWPN-SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWCGN 270 (829)
T ss_pred ccCCCC-ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCC-chHhceeecC
Confidence 111111 25667899999999999999999999998888877777654443 2235566443
No 452
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=91.68 E-value=26 Score=39.14 Aligned_cols=137 Identities=12% Similarity=0.122 Sum_probs=72.0
Q ss_pred CCcceEEEEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEeCCC
Q 001790 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (1012)
Q Consensus 405 h~~~V~~v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd~~~ 484 (1012)
-..+|..+.+...|.+ -+|+.|| +..||..+++.+... ......+|..+.-+-.|+ +..|+.+| |.+.+..|
T Consensus 163 ~d~~V~aLv~D~~g~l-WvgT~dG-L~~fd~~~gkalql~--s~~~dk~I~al~~d~qg~---LWVGTdqG-v~~~e~~G 234 (671)
T COG3292 163 KDTPVVALVFDANGRL-WVGTPDG-LSYFDAGRGKALQLA--SPPLDKAINALIADVQGR---LWVGTDQG-VYLQEAEG 234 (671)
T ss_pred cCccceeeeeeccCcE-EEecCCc-ceEEccccceEEEcC--CCcchhhHHHHHHHhcCc---EEEEeccc-eEEEchhh
Confidence 3568889999888855 4677888 778888887655421 112335677777776776 66676444 66666555
Q ss_pred cceeeec--CCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeee-c--CCCCcEEEEEEccCCCeE
Q 001790 485 RKLFNFE--GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-D--APGHWCTTMLYSADGSRL 553 (1012)
Q Consensus 485 ~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~--~~~~~v~~~~~s~~~~~l 553 (1012)
....... -..+.|..+.- +..| .+-.|+..|..+. ........... + ..-..|.++....+|..=
T Consensus 235 ~~~sn~~~~lp~~~I~ll~q--D~qG-~lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLW 304 (671)
T COG3292 235 WRASNWGPMLPSGNILLLVQ--DAQG-ELWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLW 304 (671)
T ss_pred ccccccCCCCcchheeeeec--ccCC-CEEEeecccceeE-ecCCCCccccccccCCccccccceeeccCCCEe
Confidence 3222211 12233443332 2232 4556666665432 22221111111 1 112245666666666543
No 453
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.68 E-value=16 Score=36.68 Aligned_cols=239 Identities=8% Similarity=0.036 Sum_probs=129.9
Q ss_pred CCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEEEEecCcceEEEeeccCeeEeeecccccc
Q 001790 719 DPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQ 798 (1012)
Q Consensus 719 ~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~ 798 (1012)
++.-.+||..-+++...+.|--.|.. .++...+.+. ....-..+..-|||..-++-+..+..|+
T Consensus 66 dvapapdG~VWft~qg~gaiGhLdP~----tGev~~ypLg----~Ga~Phgiv~gpdg~~Witd~~~aI~R~-------- 129 (353)
T COG4257 66 DVAPAPDGAVWFTAQGTGAIGHLDPA----TGEVETYPLG----SGASPHGIVVGPDGSAWITDTGLAIGRL-------- 129 (353)
T ss_pred ccccCCCCceEEecCccccceecCCC----CCceEEEecC----CCCCCceEEECCCCCeeEecCcceeEEe--------
Confidence 34445666666666655555544543 2333333333 2334455667777765555444433332
Q ss_pred CCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEEEcCCcEEEEEcCCCeEEEEEcCC-CCCeeE
Q 001790 799 NPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSP-PPASTF 877 (1012)
Q Consensus 799 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~-~~~i~~ 877 (1012)
+.++.......++............|.++|.+-+++..|.---.|..+ ..+.++... ....+.
T Consensus 130 ---------------dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~-~~i~vfpaPqG~gpyG 193 (353)
T COG4257 130 ---------------DPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPAR-NVISVFPAPQGGGPYG 193 (353)
T ss_pred ---------------cCcccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCccc-CceeeeccCCCCCCcc
Confidence 444555444444443356678889999999999988633211112111 112222222 223567
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEEccCCe--EeEEecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCccccEEE
Q 001790 878 LAFHPQDNNIIAIGTEDSTIHIYNVRVDE--VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTI 955 (1012)
Q Consensus 878 l~~sp~d~~~las~~~dg~v~iwd~~~~~--~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~ 955 (1012)
|+..| +|..-.+.-.+..|-..|..++. .+-.-.+....-..+--+|.|+.-+|....+.+.-+|-...... ..
T Consensus 194 i~atp-dGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~---ey 269 (353)
T COG4257 194 ICATP-DGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWI---EY 269 (353)
T ss_pred eEECC-CCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccce---ee
Confidence 88888 77666665566666666766552 11111221223344555688888888887888888887764432 22
Q ss_pred ecCCCCCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCce
Q 001790 956 HIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKME 995 (1012)
Q Consensus 956 ~~~~~~~~~~v~~l~fs~d~~~l~~~-~d~~i~vwd~~~~~ 995 (1012)
.++... ..-.++.....|+.-++- +.+.|.-+|.++.+
T Consensus 270 pLPgs~--arpys~rVD~~grVW~sea~agai~rfdpeta~ 308 (353)
T COG4257 270 PLPGSK--ARPYSMRVDRHGRVWLSEADAGAIGRFDPETAR 308 (353)
T ss_pred eCCCCC--CCcceeeeccCCcEEeeccccCceeecCcccce
Confidence 222221 233556666666655543 45667777766544
No 454
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=91.61 E-value=22 Score=38.27 Aligned_cols=68 Identities=18% Similarity=0.161 Sum_probs=41.5
Q ss_pred CCCCEeEEEEee-------CCCEEEEEc-CCcEEEEEcCCCeEEE---EE-cCCCCCeeEEEEecCCCcEEEEEeCCCeE
Q 001790 830 LEEAVPCIALSK-------NDSYVMSAT-GGKISLFNMMTFKVMT---TF-MSPPPASTFLAFHPQDNNIIAIGTEDSTI 897 (1012)
Q Consensus 830 ~~~~v~~~~~s~-------dg~~la~~s-dg~i~lwd~~~~~~~~---~~-~~~~~~i~~l~~sp~d~~~las~~~dg~v 897 (1012)
+...+..+.|-. .|.++++.. .+.|....++++..+. .+ ......+..+++.| ||.+.++-+.+|.|
T Consensus 251 ~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p-DG~Lyv~~d~~G~i 329 (331)
T PF07995_consen 251 PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP-DGALYVSDDSDGKI 329 (331)
T ss_dssp TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET-TSEEEEEE-TTTTE
T ss_pred CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC-CCeEEEEECCCCeE
Confidence 446677777764 344555554 5678888876453222 22 23444799999999 88888887778876
Q ss_pred E
Q 001790 898 H 898 (1012)
Q Consensus 898 ~ 898 (1012)
+
T Consensus 330 y 330 (331)
T PF07995_consen 330 Y 330 (331)
T ss_dssp E
T ss_pred e
Confidence 4
No 455
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.56 E-value=0.87 Score=45.35 Aligned_cols=75 Identities=12% Similarity=0.164 Sum_probs=54.6
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCCccccE-EE-ecCCC------CCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCc
Q 001790 923 FSTSLNILVSSGADAQLCVWSIDTWEKRKSV-TI-HIPAG------KTPTGDTRVQFNADQVRMLVVHETQLAIYDASKM 994 (1012)
Q Consensus 923 ~spdg~~l~s~s~Dg~i~vwd~~~~~~~~~~-~~-~~~~~------~~~~~v~~l~fs~d~~~l~~~~d~~i~vwd~~~~ 994 (1012)
+..++.+|.+.+.+|.+++||+.+++..... .+ .+... .....|..+.++.+|.-+++-++|..+.|+.+=+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4456889999999999999999998755332 11 11111 2236789999999999888888899999987644
Q ss_pred eEE
Q 001790 995 ERI 997 (1012)
Q Consensus 995 ~~~ 997 (1012)
.-+
T Consensus 98 ~W~ 100 (219)
T PF07569_consen 98 CWI 100 (219)
T ss_pred eeE
Confidence 433
No 456
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.07 E-value=0.51 Score=54.27 Aligned_cols=114 Identities=15% Similarity=0.227 Sum_probs=71.0
Q ss_pred EEEccCCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEE-----------EeCCCCceEEEEEcCCCcEEEE
Q 001790 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLA-----------FAYPNKLLCVVTCGDDKLIKVW 480 (1012)
Q Consensus 412 v~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~-----------~s~~~~~~~l~s~~~d~~v~vw 480 (1012)
+-|-++.-++..+-.++.|++.++.+... . .+.+|...+..++ .||||+ .|+.++.||.++.|
T Consensus 189 cp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~---l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~f~ 262 (1283)
T KOG1916|consen 189 CPIAVNKVYICYGLKGGEIRLLNINRALR-S---LFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVGFY 262 (1283)
T ss_pred cccccccceeeeccCCCceeEeeechHHH-H---HHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCcccee
Confidence 33444777888888889998887776432 1 3556887777665 489999 89999999999998
Q ss_pred e--CCCc----ceeeecCCcc-CEEEEeccccC-------CceEEEEEe-cCCeEEEEEcCCCCce
Q 001790 481 E--LSGR----KLFNFEGHEA-PVYSICPHHKE-------NIQFIFSTA-IDGKIKAWLYDTMGSR 531 (1012)
Q Consensus 481 d--~~~~----~~~~~~~h~~-~v~~~~~~~~~-------~~~~l~s~~-~dg~i~~wd~~~~~~~ 531 (1012)
. ..|+ ++..++.|++ +-.|.-++... --.++++++ .+..+++|.-..-++.
T Consensus 263 Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 263 QIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 8 5664 4455666763 22222222111 012344444 3456888865554444
No 457
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=90.80 E-value=37 Score=39.29 Aligned_cols=391 Identities=13% Similarity=0.148 Sum_probs=0.0
Q ss_pred EEEecCCCcEEEEecCCCeEEEEEccC-CceecccccccccccccCccccceeccCC-------CcceEEEEEcc-----
Q 001790 350 MDFHPSHQTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDV-------PISVSRVAWSP----- 416 (1012)
Q Consensus 350 ~~~spdg~~llasg~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~V~~v~~sp----- 416 (1012)
++..|.|+ .++.+..+|.+.|+-+.. ...-.. ...| ...|.+++|-.
T Consensus 49 l~vDP~~R-~i~v~a~e~~~~v~~l~~~~~~~~~-------------------~~~~~~~pi~s~~~i~~~~FL~~~~~~ 108 (504)
T PF10433_consen 49 LAVDPSGR-CIAVSAYEGNFLVYPLNRSLDSDIA-------------------FSPHINSPIKSEGNILDMCFLHPSVGY 108 (504)
T ss_dssp EEE-TTSS-EEEEEEBTTEEEEEE-SS----T-T-------------------T---EEEE--S-SEEEEEEEES---S-
T ss_pred EEECCcCC-EEEEEecCCeEEEEEeccccccccc-------------------ccccccccccCCceEEEEEEEecccCC
Q ss_pred CCCEEEEEECCCe------EEEEeecCCCcceeeeeeec------cccCeEEEEEeCCCCceEEEEEcCCCcEEEEe--C
Q 001790 417 DGNYVGVAFTKHL------IQLYSYAGSNDLRQHSQIDA------HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--L 482 (1012)
Q Consensus 417 dg~~las~~~d~~------v~vwd~~~~~~~~~~~~l~~------h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd--~ 482 (1012)
+...+|.--.+.. .+-|+...+........-.. +..+..-+..-.... .++.++..-.++.=. .
T Consensus 109 ~~p~la~L~~~~~~~~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p~~LIPlp~~~g--gllV~~~~~i~y~~~~~~ 186 (504)
T PF10433_consen 109 DNPTLAILYVDSQRRTHLVTYEWSLDDGLNHVISKSTLPIRLPNEDELPSFLIPLPNPPG--GLLVGGENIIIYKNHLIG 186 (504)
T ss_dssp SS-EEEEEEEETT-EEEEEEEE--------EETTTTEEEE--EEEE-TTEEEEEE-TTT---SEEEEESSEEEEEE----
T ss_pred CCceEEEEEEEecccceeEEEeeecccccceeeeeccccccccccCCCccEEEEcCCCCc--EEEEECCEEEEEeccccc
Q ss_pred CCcceeeecCCc----cCEEEEecc------ccCCceEEEEEecCCeEEEEEcCCCC--ceeeecCC-CCcEEEEEEccC
Q 001790 483 SGRKLFNFEGHE----APVYSICPH------HKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDAP-GHWCTTMLYSAD 549 (1012)
Q Consensus 483 ~~~~~~~~~~h~----~~v~~~~~~------~~~~~~~l~s~~~dg~i~~wd~~~~~--~~~~~~~~-~~~v~~~~~s~~ 549 (1012)
.+.....-.... ..+....-. ...++..++.+.++|.+....+.... .....-+. .....++++..+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~ 266 (504)
T PF10433_consen 187 SGDYSFLSIPSPPSSSSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKN 266 (504)
T ss_dssp --TTEEEEE--H-HHHTS-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEEST
T ss_pred ccccccccccCCccCCCceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcC
Q ss_pred C--CeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEe----cCCC------EEEEEe---CCCcEEEEeC
Q 001790 550 G--SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFD----TTQN------HFLAVG---EDSQIKFWDM 614 (1012)
Q Consensus 550 ~--~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s----~~~~------~l~~~~---~dg~i~iwd~ 614 (1012)
| -.++.+.. +|+.+..|....-+.+..+.... ++..+++. .... .+++++ .+|.+++..-
T Consensus 267 g~d~lf~gs~~---gds~l~~~~~~~l~~~~~~~N~~--Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~ 341 (504)
T PF10433_consen 267 GGDYLFVGSEF---GDSQLLQISLSNLEVLDSLPNWG--PIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN 341 (504)
T ss_dssp T--EEEEEESS---S-EEEEEEESESEEEEEEE------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE
T ss_pred CCEEEEEEEec---CCcEEEEEeCCCcEEEEeccCcC--CccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec
Q ss_pred CCCee--EEEEecCCCCCCcceeEeecCCCEEEEEECCCcEEEEEcc--CCceeeecccCCccccccCccceeeeccccc
Q 001790 615 DNVNI--LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA--IGLRSLRAVENPPFEALRTPIESVALKVSAS 690 (1012)
Q Consensus 615 ~~~~~--~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~ 690 (1012)
.-+-. ......-.+...++.+....++...+..+....-+++.+. +.......+....+......+.+-.+. +.
T Consensus 342 Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~ 419 (504)
T PF10433_consen 342 GIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSFPNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DG 419 (504)
T ss_dssp SBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEESSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TT
T ss_pred cCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEcCCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CC
Q ss_pred cccccCCCCCccccccCCCCCCccccCCCCCCCCCCCCcccccccCCCCCcceeEEeecCceEEEecCCCCCCCCceEEE
Q 001790 691 SAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRL 770 (1012)
Q Consensus 691 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 770 (1012)
.+ +
T Consensus 420 ~i-----------------------------------------------------------------------------v 422 (504)
T PF10433_consen 420 RI-----------------------------------------------------------------------------V 422 (504)
T ss_dssp EE-----------------------------------------------------------------------------E
T ss_pred eE-----------------------------------------------------------------------------E
Q ss_pred EEecCcceEEEeeccCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEEEEEc
Q 001790 771 LYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT 850 (1012)
Q Consensus 771 ~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s 850 (1012)
.+.+.+-.++..........|.. ..+..-..+...++..+++.+
T Consensus 423 QVt~~~i~l~~~~~~~~~~~w~~------------------------------------~~~~~I~~a~~~~~~v~v~~~ 466 (504)
T PF10433_consen 423 QVTPKGIRLIDLEDGKLTQEWKP------------------------------------PAGSIIVAASINDPQVLVALS 466 (504)
T ss_dssp EEESSEEEEEESSSTSEEEEEE-------------------------------------TTS---SEEEESSSEEEEEE-
T ss_pred EEecCeEEEEECCCCeEEEEEeC------------------------------------CCCCeEEEEEECCCEEEEEEe
Q ss_pred CCcEEEEEcCCCeEEEEEcCC-----CCCeeEEEEec
Q 001790 851 GGKISLFNMMTFKVMTTFMSP-----PPASTFLAFHP 882 (1012)
Q Consensus 851 dg~i~lwd~~~~~~~~~~~~~-----~~~i~~l~~sp 882 (1012)
++.+..+.+............ ...|.|+...|
T Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 467 GGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred CCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
No 458
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.76 E-value=1 Score=30.77 Aligned_cols=32 Identities=22% Similarity=0.427 Sum_probs=27.1
Q ss_pred CCeeEEEEecCCC--cEEEEEeCCCeEEEEEccC
Q 001790 873 PASTFLAFHPQDN--NIIAIGTEDSTIHIYNVRV 904 (1012)
Q Consensus 873 ~~i~~l~~sp~d~--~~las~~~dg~v~iwd~~~ 904 (1012)
+.+.++.|||..+ .+|+..-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4688999998455 6999888899999999985
No 459
>PHA02790 Kelch-like protein; Provisional
Probab=90.72 E-value=14 Score=42.30 Aligned_cols=148 Identities=9% Similarity=0.007 Sum_probs=70.6
Q ss_pred CceEEEEEecC--CeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCC
Q 001790 507 NIQFIFSTAID--GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584 (1012)
Q Consensus 507 ~~~~l~s~~~d--g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~ 584 (1012)
++.+.+.||.+ ..+..||..+..-...-.............-+|+..+.||.+. ....+..||..+.+-...-....
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~-~~~~ve~ydp~~~~W~~~~~m~~ 396 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSE-TDTTTEYLLPNHDQWQFGPSTYY 396 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCC-CCccEEEEeCCCCEEEeCCCCCC
Confidence 45677777754 3577777654322221111111111122234666666666432 23567789887765443221111
Q ss_pred CCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECC-----CcEEEEEcc
Q 001790 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD-----NGFKILANA 659 (1012)
Q Consensus 585 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d-----g~i~iwd~~ 659 (1012)
. .....+..-++...+.| |.+.+||..+++-...-..... ....-+..-+|+..++|+.+ ..+..||..
T Consensus 397 ~-r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~--r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 397 P-HYKSCALVFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYP--RDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred c-cccceEEEECCEEEEEC---CceEEecCCCCcEeEcCCCCCC--ccccEEEEECCEEEEECCcCCCcccceEEEEECC
Confidence 1 11112223344444444 3567888877655433222211 11111223367777888754 346667766
Q ss_pred CC
Q 001790 660 IG 661 (1012)
Q Consensus 660 ~~ 661 (1012)
++
T Consensus 471 ~~ 472 (480)
T PHA02790 471 TY 472 (480)
T ss_pred CC
Confidence 54
No 460
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.55 E-value=12 Score=33.25 Aligned_cols=112 Identities=17% Similarity=0.155 Sum_probs=72.0
Q ss_pred EEecCCCcEEEEEeCCCeEEEEEccCCe--------EeEEecccCCCeEEEEEcC-----CCCEEEEEeCCCcEEEEeCC
Q 001790 879 AFHPQDNNIIAIGTEDSTIHIYNVRVDE--------VKSKLKGHQKRITGLAFST-----SLNILVSSGADAQLCVWSID 945 (1012)
Q Consensus 879 ~~sp~d~~~las~~~dg~v~iwd~~~~~--------~~~~~~~h~~~V~~l~~sp-----dg~~l~s~s~Dg~i~vwd~~ 945 (1012)
.|.. ....|++++.-|+|.|.+..... .+..+. -...|++++-.+ +...|+.|+ ...+..||+.
T Consensus 5 kfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 5 KFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EeCC-CceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 4544 45578888888899999865332 233333 345677776443 345566666 4569999998
Q ss_pred CCCccccEEEecCCCCCCCCceEEEEcC----CCCEEEEEeCCeEEEEECCCceEEEee
Q 001790 946 TWEKRKSVTIHIPAGKTPTGDTRVQFNA----DQVRMLVVHETQLAIYDASKMERIRQV 1000 (1012)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~v~~l~fs~----d~~~l~~~~d~~i~vwd~~~~~~~~~~ 1000 (1012)
....+.- ..-+.+|.++.+-. +..++++|.+-.|.-||.+-.|..-++
T Consensus 82 ~N~d~Fy-------ke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 82 NNSDLFY-------KEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred cCchhhh-------hhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 8654322 22226677777732 566777888888999998766665544
No 461
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=90.43 E-value=21 Score=40.79 Aligned_cols=93 Identities=11% Similarity=0.188 Sum_probs=55.1
Q ss_pred EEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeEEecccCCCeEEEEEcCCCCEEEEEeCC
Q 001790 857 FNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGAD 936 (1012)
Q Consensus 857 wd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D 936 (1012)
.|+-.|... .+..|.+.|--+.... .+..|..-...-.+.++|+.+.+....+ +-.+-+.|-|....++.-+.|
T Consensus 323 vdli~g~~~-~~inh~~~vdwielne-~~~kllfrdkk~kl~l~di~s~qksmil----nfcsymqwvp~sdvivaqn~d 396 (1636)
T KOG3616|consen 323 VDLIGGQNE-GFINHEGAVDWIELNE-RAHKLLFRDKKLKLHLVDIESCQKSMIL----NFCSYMQWVPGSDVIVAQNGD 396 (1636)
T ss_pred eecccCccc-ccccccccccceeccc-hhhhhhcccccceeEEEEcccchHHHHH----HHhhhheeccCcceEEecCCC
Confidence 344444332 2335777777777766 5555555555567888998875432211 123457899988888877777
Q ss_pred CcEEEEeCCCCCccccEEE
Q 001790 937 AQLCVWSIDTWEKRKSVTI 955 (1012)
Q Consensus 937 g~i~vwd~~~~~~~~~~~~ 955 (1012)
+....|+++..+.+..+.+
T Consensus 397 nl~iwyn~d~peqvt~~ki 415 (1636)
T KOG3616|consen 397 NLCIWYNIDAPEQVTMFKI 415 (1636)
T ss_pred ceEEEecCCcchhheeeEe
Confidence 6444446666665544433
No 462
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.28 E-value=12 Score=44.68 Aligned_cols=31 Identities=13% Similarity=0.052 Sum_probs=25.1
Q ss_pred CCCCEeEEEEeeCCCEEEEEcCCcEEEEEcC
Q 001790 830 LEEAVPCIALSKNDSYVMSATGGKISLFNMM 860 (1012)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~sdg~i~lwd~~ 860 (1012)
....|..+.++++|++||..+...|.|..+.
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP 113 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELP 113 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEec
Confidence 4567999999999999999887667666664
No 463
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=90.16 E-value=2.1 Score=40.94 Aligned_cols=31 Identities=32% Similarity=0.564 Sum_probs=25.4
Q ss_pred cceEEEEEccCC------CEEEEEECCCeEEEEeecC
Q 001790 407 ISVSRVAWSPDG------NYVGVAFTKHLIQLYSYAG 437 (1012)
Q Consensus 407 ~~V~~v~~spdg------~~las~~~d~~v~vwd~~~ 437 (1012)
..|.+++|||-| -+||+...++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 379999999954 3788889999999997664
No 464
>PHA02790 Kelch-like protein; Provisional
Probab=90.15 E-value=12 Score=42.95 Aligned_cols=145 Identities=8% Similarity=-0.111 Sum_probs=65.1
Q ss_pred CCCEEEEEECCC-----eEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCC--CcEEEEe-CCCcce-
Q 001790 417 DGNYVGVAFTKH-----LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD--KLIKVWE-LSGRKL- 487 (1012)
Q Consensus 417 dg~~las~~~d~-----~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d--~~v~vwd-~~~~~~- 487 (1012)
++.++++|+.++ .+..||..+++-.. ...+.........+ .-+|. +.+.||.+ .++..|| .+++..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~-~~~m~~~r~~~~~v--~~~~~--iYviGG~~~~~sve~ydp~~n~W~~ 345 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIP-IPPMNSPRLYASGV--PANNK--LYVVGGLPNPTSVERWFHGDAAWVN 345 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEE-CCCCCchhhcceEE--EECCE--EEEECCcCCCCceEEEECCCCeEEE
Confidence 455667776543 46677877654222 11121111112122 23555 55666643 4677888 444322
Q ss_pred -eeecCCccCEEEEeccccCCceEEEEEecCC---eEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCC
Q 001790 488 -FNFEGHEAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1012)
Q Consensus 488 -~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 563 (1012)
..+.........++. +|.+.+.||.++ .+..||.++..-...-..........+..-+|+..+.|+
T Consensus 346 ~~~l~~~r~~~~~~~~----~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG------ 415 (480)
T PHA02790 346 MPSLLKPRCNPAVASI----NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR------ 415 (480)
T ss_pred CCCCCCCCcccEEEEE----CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC------
Confidence 122211111112221 457777777653 466787665432221111111111112233454444443
Q ss_pred CcEEEEeCCCCeee
Q 001790 564 SFLVEWNESEGTIK 577 (1012)
Q Consensus 564 ~~i~lwd~~~~~~~ 577 (1012)
.+.+||..+++-.
T Consensus 416 -~~e~ydp~~~~W~ 428 (480)
T PHA02790 416 -NAEFYCESSNTWT 428 (480)
T ss_pred -ceEEecCCCCcEe
Confidence 3667888776544
No 465
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=90.03 E-value=1.2 Score=30.47 Aligned_cols=39 Identities=10% Similarity=0.178 Sum_probs=31.2
Q ss_pred CCCCEEEEE--eCCeEEEEECCCceEEEeecC-CCeeEEEec
Q 001790 973 ADQVRMLVV--HETQLAIYDASKMERIRQVGS-PHICSIIFC 1011 (1012)
Q Consensus 973 ~d~~~l~~~--~d~~i~vwd~~~~~~~~~~~~-~~i~~~~f~ 1011 (1012)
||+++|.++ .+++|.++|..+++.+..+.. .+-.+++|+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 688888886 478999999999999998876 456666664
No 466
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=89.93 E-value=10 Score=41.34 Aligned_cols=152 Identities=9% Similarity=0.079 Sum_probs=91.7
Q ss_pred eEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCCccCEEEEeccccC------CceEEEEEecCCeEEEEEcC
Q 001790 454 VNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKE------NIQFIFSTAIDGKIKAWLYD 526 (1012)
Q Consensus 454 v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~~v~~~~~~~~~------~~~~l~s~~~dg~i~~wd~~ 526 (1012)
+.-+-.+.+...+.+..|+....++-.| ..|+.+..+.-|...+ +.+.|.. +.+.| .|-.+..|.-.|.+
T Consensus 469 p~K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR 545 (776)
T COG5167 469 PEKIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPR 545 (776)
T ss_pred hhhceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceE-EeecccceEEeccc
Confidence 3334444445555667777777888888 8899999888887653 3443322 11233 45555566556666
Q ss_pred CCCceeeecCCCC-----cEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEE
Q 001790 527 TMGSRVDYDAPGH-----WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFL 601 (1012)
Q Consensus 527 ~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 601 (1012)
..+.......... ...+..-. ..-++++++ +.|-|++||.-.......+++... .|..+..+.+|.+++
T Consensus 546 ~~gNKi~v~esKdY~tKn~Fss~~tT-esGyIa~as----~kGDirLyDRig~rAKtalP~lG~-aIk~idvta~Gk~il 619 (776)
T COG5167 546 ARGNKIKVVESKDYKTKNKFSSGMTT-ESGYIAAAS----RKGDIRLYDRIGKRAKTALPGLGD-AIKHIDVTANGKHIL 619 (776)
T ss_pred ccCCceeeeeehhccccccccccccc-cCceEEEec----CCCceeeehhhcchhhhcCccccc-ceeeeEeecCCcEEE
Confidence 5443332221111 12222222 344788887 588899999654444445555544 788899999999998
Q ss_pred EEeCCCcEEEEeCC
Q 001790 602 AVGEDSQIKFWDMD 615 (1012)
Q Consensus 602 ~~~~dg~i~iwd~~ 615 (1012)
+.+.. .+.+-|+.
T Consensus 620 aTCk~-yllL~d~~ 632 (776)
T COG5167 620 ATCKN-YLLLTDVP 632 (776)
T ss_pred Eeecc-eEEEEecc
Confidence 87754 66666653
No 467
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=89.66 E-value=52 Score=40.26 Aligned_cols=159 Identities=12% Similarity=0.138 Sum_probs=100.1
Q ss_pred CCCCEeEEEEe---e----CCCEEEEEcCCcEEEEEcCCC---------------eEEEEEcC---CCCCeeEEEEecCC
Q 001790 830 LEEAVPCIALS---K----NDSYVMSATGGKISLFNMMTF---------------KVMTTFMS---PPPASTFLAFHPQD 884 (1012)
Q Consensus 830 ~~~~v~~~~~s---~----dg~~la~~sdg~i~lwd~~~~---------------~~~~~~~~---~~~~i~~l~~sp~d 884 (1012)
...+|..|+|+ . ..++|++-....+.|+...-. .++..+.. ...+...++|.|.+
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 56788899988 2 235888877888888872211 22233331 22357789999988
Q ss_pred CcEEEEEeCCCeEEEEEccCCe-----EeEEecccC----------CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCc
Q 001790 885 NNIIAIGTEDSTIHIYNVRVDE-----VKSKLKGHQ----------KRITGLAFSTSLNILVSSGADAQLCVWSIDTWEK 949 (1012)
Q Consensus 885 ~~~las~~~dg~v~iwd~~~~~-----~~~~~~~h~----------~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~~ 949 (1012)
.+.||+.+..|...||++.... .+.....+. +.-..+.|.++-+.|+.++. ..+.++|+++...
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~~~ 236 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESNWQ 236 (765)
T ss_pred cceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCCCc
Confidence 8899999999999999992211 111111111 23347889888778776664 4689999998764
Q ss_pred cccEEEecCCCCCCCCceEEEEcCCC-CEEEEEeCCeEEEEECCC
Q 001790 950 RKSVTIHIPAGKTPTGDTRVQFNADQ-VRMLVVHETQLAIYDASK 993 (1012)
Q Consensus 950 ~~~~~~~~~~~~~~~~v~~l~fs~d~-~~l~~~~d~~i~vwd~~~ 993 (1012)
... +........|..+.-+++. .++++-....|...++.+
T Consensus 237 ~~~----l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 237 TEY----LVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred cch----hccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 322 2222233677788877772 233333346677777665
No 468
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.64 E-value=5.5 Score=37.97 Aligned_cols=147 Identities=10% Similarity=0.057 Sum_probs=79.6
Q ss_pred CceEEEEEecC--CeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCC
Q 001790 507 NIQFIFSTAID--GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584 (1012)
Q Consensus 507 ~~~~l~s~~~d--g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~ 584 (1012)
+|.++.+.+.- ..|++||+.+++...+.......+..=-...-|.++..-.. .++.-..+|..+-+.+..+.-..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw---~egvaf~~d~~t~~~lg~~~y~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTW---KEGVAFKYDADTLEELGRFSYEG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEe---ccceeEEEChHHhhhhcccccCC
Confidence 44667776654 46999999988877765544222221112223444444443 58888899998888877766433
Q ss_pred CCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCc---ceeEeecCCCEEEEEECCCcEEEEEccCC
Q 001790 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL---PRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1012)
Q Consensus 585 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v---~~v~~s~~g~~l~~~~~dg~i~iwd~~~~ 661 (1012)
. -. ....|+..++.+.....++.-|.++.....++.......+| +-+.|- +|...|-.-.+..|...+..++
T Consensus 132 e--GW--gLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sG 206 (262)
T COG3823 132 E--GW--GLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSG 206 (262)
T ss_pred c--ce--eeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCC
Confidence 2 12 23345556666666667777777665444433322211122 333332 4555544444444444454444
No 469
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=89.57 E-value=45 Score=42.57 Aligned_cols=148 Identities=11% Similarity=0.158 Sum_probs=77.5
Q ss_pred CCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001790 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1012)
Q Consensus 343 h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 422 (1012)
|-..++.+.-+|+|.+ +=. .|+.++.||...+.- ..- -..-..+++.+.-.-||+..|
T Consensus 361 H~A~LTgv~~~~~ge~-lRl--Hd~~LY~~d~~~~~W---------k~~----------~~~~d~~~S~Ls~qgdG~lYA 418 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDGEQ-LRL--HDDRLYQFDPNTARW---------KPP----------PDKSDTPFSSLSRQGDGKLYA 418 (1774)
T ss_pred HHHHhhccccCCCCCe-EEe--ecCceeeecccccee---------cCC----------CCcccchhhhhcccCCCceEe
Confidence 3345556666666663 222 466666666554321 100 001233455555555666655
Q ss_pred EEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe---CCCcc------eeeecCC
Q 001790 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE---LSGRK------LFNFEGH 493 (1012)
Q Consensus 423 s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd---~~~~~------~~~~~~h 493 (1012)
.++. .|-|+..+.... .--..+.+...+++|.- .+.++.....+.+|+ ..+.. ...+.+.
T Consensus 419 ---k~~~-~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG 487 (1774)
T PF11725_consen 419 ---KDDD-TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADG 487 (1774)
T ss_pred ---cCCC-ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccCC
Confidence 2221 134555443211 12235677778899983 366777667779998 22221 1223333
Q ss_pred ccCEEEEeccccCCceEEEEEecCCeEEEEEcCC
Q 001790 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (1012)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~ 527 (1012)
.....++.++. + .|+++..+|.++.=++..
T Consensus 488 ~a~A~~VgLs~--d--rLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 488 KAQAQSVGLSN--D--RLFVADSEGKLYSADLPA 517 (1774)
T ss_pred chhhhheeecC--C--eEEEEeCCCCEEeccccc
Confidence 33555566533 3 588888889887766543
No 470
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=89.50 E-value=6.1 Score=45.30 Aligned_cols=86 Identities=10% Similarity=0.113 Sum_probs=53.5
Q ss_pred EEEEcCCCCEEEEEeCCCc-----EEEEeCCC---CCccccEEEecCCCCCCCCceEEEEcCCCCEEEEEeCCeEEEEEC
Q 001790 920 GLAFSTSLNILVSSGADAQ-----LCVWSIDT---WEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDA 991 (1012)
Q Consensus 920 ~l~~spdg~~l~s~s~Dg~-----i~vwd~~~---~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~d~~i~vwd~ 991 (1012)
.++|-|.|..++|-+.||+ |.++.-.. |+. .+..... ..+..++|.-....++++..+.+.+|-.
T Consensus 251 ~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef----~lr~~~d---Ek~~~~~wn~~s~vlav~~~n~~~lwtt 323 (1243)
T COG5290 251 QLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEF----DLRVGCD---EKAFLENWNLLSTVLAVAEGNLLKLWTT 323 (1243)
T ss_pred ccccccCCceeeeeccCCCCCcceEEEEccCCcccCCc----cccCCch---hhhhhhhhhHHHHHHHHhhcceEEEEEc
Confidence 4789999999999887763 55554332 221 1111111 3456677777777777777788999988
Q ss_pred CCceE--EEeecCCCeeEEEecC
Q 001790 992 SKMER--IRQVGSPHICSIIFCN 1012 (1012)
Q Consensus 992 ~~~~~--~~~~~~~~i~~~~f~p 1012 (1012)
.+... ....+.+.|.-+.|.|
T Consensus 324 kNyhWYLK~e~~ip~~s~vkwhp 346 (1243)
T COG5290 324 KNYHWYLKVERQIPGISYVKWHP 346 (1243)
T ss_pred cceEEEEEEeecCCCcceeeecc
Confidence 77542 2333335666666665
No 471
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=89.08 E-value=79 Score=40.59 Aligned_cols=68 Identities=12% Similarity=0.077 Sum_probs=49.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCccccEEEecCCCCCCCCceEEEEcCCCCEEEEEeCCeEEEE
Q 001790 915 QKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIY 989 (1012)
Q Consensus 915 ~~~V~~l~~spdg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~d~~i~vw 989 (1012)
...|++++.-.+ +.+++.+..|.+.... ..+..+ .+....-.+.|..++......+.+..++|.++--
T Consensus 702 ~~~i~a~Avv~~-~~fvald~qg~lt~h~-k~g~p~-----~l~~~gl~G~ik~l~lD~~~nL~Alt~~G~Lf~~ 769 (1774)
T PF11725_consen 702 DRVITAFAVVND-NKFVALDDQGDLTAHQ-KPGRPV-----PLSRPGLSGEIKDLALDEKQNLYALTSTGELFRL 769 (1774)
T ss_pred cCcceeEEEEcC-CceEEeccCCcccccc-CCCCCc-----cCCCCCCCcchhheeeccccceeEecCCCceeec
Confidence 456788888755 5566688899999988 666632 3333333488999999999888888888877654
No 472
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=88.35 E-value=26 Score=34.14 Aligned_cols=49 Identities=12% Similarity=0.388 Sum_probs=36.1
Q ss_pred CEEEEEeCCCcEEEEeCC--CCeeEEEEecCCCCCCcceeEeecCCCEEEEEEC
Q 001790 598 NHFLAVGEDSQIKFWDMD--NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (1012)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~ 649 (1012)
..|+.+...+.|.+|++. ..+....+.. .+.|..+.++..|+++++--.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T---v~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST---VGRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc---hhheeEEEeccccceEEEEEe
Confidence 455555677789999988 3444555543 347899999999999998754
No 473
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=88.25 E-value=3.7 Score=35.20 Aligned_cols=79 Identities=22% Similarity=0.355 Sum_probs=52.9
Q ss_pred CcchHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCC-HHHHHHHhhccCHHHHHHHHcCCCCCCCcccchhHHHHHHHhH
Q 001790 2 SSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFN-MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80 (1012)
Q Consensus 2 ~~~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~-~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ 80 (1012)
..+.+|-...|..|++..| +.+-+++|.||++. ++. +.|+.+..|......... -...+..
T Consensus 32 ~~L~~E~~~Fi~~Fi~~rG---nlKe~e~~lgiSYPTvR~--------rLd~ii~~lg~~~~~~~~-------~~~~~~~ 93 (113)
T PF09862_consen 32 ARLSPEQLEFIKLFIKNRG---NLKEMEKELGISYPTVRN--------RLDKIIEKLGYEEDEEEE-------EEDERKE 93 (113)
T ss_pred hcCCHHHHHHHHHHHHhcC---CHHHHHHHHCCCcHHHHH--------HHHHHHHHhCCCCCcccc-------cchhHHH
Confidence 3466777888999999999 99999999999996 221 123333444431111111 1233778
Q ss_pred HhHhhccCC--HHHHHHHHH
Q 001790 81 YLEALDRQD--KAKAVDILV 98 (1012)
Q Consensus 81 ~~ell~~~~--~~~A~~~l~ 98 (1012)
.|+.|+.|+ .++|++.|+
T Consensus 94 IL~~L~~GeIs~eeA~~~Lk 113 (113)
T PF09862_consen 94 ILDKLEKGEISVEEALEILK 113 (113)
T ss_pred HHHHHHcCCCCHHHHHHHhC
Confidence 889999998 778887764
No 474
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=88.03 E-value=30 Score=42.23 Aligned_cols=141 Identities=14% Similarity=0.185 Sum_probs=86.5
Q ss_pred CCCCeeEEEEe---c---CCCcEEEEEeCCCeEEEEE------ccCC---------eEeEEecc---cCCCeEEEEEcCC
Q 001790 871 PPPASTFLAFH---P---QDNNIIAIGTEDSTIHIYN------VRVD---------EVKSKLKG---HQKRITGLAFSTS 926 (1012)
Q Consensus 871 ~~~~i~~l~~s---p---~d~~~las~~~dg~v~iwd------~~~~---------~~~~~~~~---h~~~V~~l~~spd 926 (1012)
-..+|..++|+ . ...++|++ -....+.|+. +... .++..+.. -..+...++|+|.
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 45678888887 2 12246664 4456677777 1111 23444432 1235678999984
Q ss_pred -CCEEEEEeCCCcEEEEeCCCCCccccEEEec---------CCCCCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCceE
Q 001790 927 -LNILVSSGADAQLCVWSIDTWEKRKSVTIHI---------PAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMER 996 (1012)
Q Consensus 927 -g~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~---------~~~~~~~~v~~l~fs~d~~~l~~~~d~~i~vwd~~~~~~ 996 (1012)
.+.||..+..|...||++..........+.. ......+.-..+.|.++-..|+++....+.++|+++...
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~ 236 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQ 236 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCCCCc
Confidence 5689999999999999993322221111111 111111334489999999999999889999999998876
Q ss_pred EEee---cC-CCeeEEEecC
Q 001790 997 IRQV---GS-PHICSIIFCN 1012 (1012)
Q Consensus 997 ~~~~---~~-~~i~~~~f~p 1012 (1012)
...+ .. ..|.++.-+|
T Consensus 237 ~~~l~~~~~~~~IlDv~~~~ 256 (765)
T PF10214_consen 237 TEYLVTAKTWSWILDVKRSP 256 (765)
T ss_pred cchhccCCChhheeeEEecC
Confidence 3312 11 5677766543
No 475
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=87.78 E-value=48 Score=36.49 Aligned_cols=198 Identities=15% Similarity=0.051 Sum_probs=104.5
Q ss_pred CCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcceeeecCCcc
Q 001790 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1012)
Q Consensus 417 dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~~~~~~h~~ 495 (1012)
||+. .++..+|.|.-.|.+++..+-..... .....+..-.+..+|+ ++.++.++.+...| .+|+.+........
T Consensus 68 dg~v-~~~~~~G~i~A~d~~~g~~~W~~~~~-~~~~~~~~~~~~~~G~---i~~g~~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 68 DGTV-YVGTRDGNIFALNPDTGLVKWSYPLL-GAVAQLSGPILGSDGK---IYVGSWDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred CCeE-EEecCCCcEEEEeCCCCcEEecccCc-CcceeccCceEEeCCe---EEEecccceEEEEECCCCcEEEEEecCCC
Confidence 4433 34467777777777776643211111 0111222222333776 67778888888999 58998877765541
Q ss_pred -CEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCC---CcEEEEEEccCCCeEEEeeecCCCCCcEEEEeC
Q 001790 496 -PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG---HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1012)
Q Consensus 496 -~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~ 571 (1012)
.+..-.+ ..+ ..++.++.+|.+...|.+++.......... ..+..-....++ .++.+..+ . ++.+.-.|.
T Consensus 143 ~~~~~~~v--~~~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~-~-~~~~~a~~~ 216 (370)
T COG1520 143 PYYASPPV--VGD-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDG-Y-DGILYALNA 216 (370)
T ss_pred eEEecCcE--EcC-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCC-C-cceEEEEEc
Confidence 1111111 112 244455577888888888777776644432 111111112233 33333311 1 446777777
Q ss_pred CCCeeeeeecCCCCCc---c------eEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecC
Q 001790 572 SEGTIKRTYAGFRKKS---N------GVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (1012)
Q Consensus 572 ~~~~~~~~~~~~~~~~---v------~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1012)
.+|............. + ..-.+.- +..++.++.++.+...|..+++.+......
T Consensus 217 ~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v-~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 217 EDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYV-DGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred cCCcEeeeeeeecccCcccccccccccCceEEE-CCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 7777766532211101 1 0001111 223466677888999999999998888754
No 476
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=87.45 E-value=22 Score=39.61 Aligned_cols=112 Identities=19% Similarity=0.226 Sum_probs=63.4
Q ss_pred CCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCe--EeEEec-----ccCCCeEEEEEcCCC------CEEEEEe---
Q 001790 871 PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE--VKSKLK-----GHQKRITGLAFSTSL------NILVSSG--- 934 (1012)
Q Consensus 871 ~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~--~~~~~~-----~h~~~V~~l~~spdg------~~l~s~s--- 934 (1012)
.-...+.|+|.| |+++|++--..|.|++++-.++. .+..+. .-.+....|+|+|+- .+|....
T Consensus 28 GL~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~ 106 (454)
T TIGR03606 28 GLNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYK 106 (454)
T ss_pred CCCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEecc
Confidence 344578899999 88888766557999999865543 222121 125668899999874 2333321
Q ss_pred -------CCCcEEEEeCCCC--Cc--cccEEEecCCCCCCCCceEEEEcCCCCEEEEEeCC
Q 001790 935 -------ADAQLCVWSIDTW--EK--RKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHET 984 (1012)
Q Consensus 935 -------~Dg~i~vwd~~~~--~~--~~~~~~~~~~~~~~~~v~~l~fs~d~~~l~~~~d~ 984 (1012)
....|.-|.+... .. ...+....+.... ..-..|+|.|||.+.++..|+
T Consensus 107 ~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~-H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 107 NGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGND-HNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCC-cCCceEEECCCCcEEEEECCC
Confidence 1234555555421 11 1122222222110 123678899999977775443
No 477
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.31 E-value=3.7 Score=40.96 Aligned_cols=80 Identities=14% Similarity=0.132 Sum_probs=51.0
Q ss_pred EecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEECCCeEE
Q 001790 352 FHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQ 431 (1012)
Q Consensus 352 ~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~v~ 431 (1012)
+..++. +|++-+.+|.+++||+.+++.+... ..+..+-.... .... .....|..+.++.+|.-|++-+ +|..+
T Consensus 18 l~~~~~-~Ll~iT~~G~l~vWnl~~~k~~~~~-~Si~pll~~~~-~~~~---~~~~~i~~~~lt~~G~PiV~ls-ng~~y 90 (219)
T PF07569_consen 18 LECNGS-YLLAITSSGLLYVWNLKKGKAVLPP-VSIAPLLNSSP-VSDK---SSSPNITSCSLTSNGVPIVTLS-NGDSY 90 (219)
T ss_pred EEeCCC-EEEEEeCCCeEEEEECCCCeeccCC-ccHHHHhcccc-cccC---CCCCcEEEEEEcCCCCEEEEEe-CCCEE
Confidence 445677 4666678999999999998876532 11111110000 0000 4567889999998888877654 57788
Q ss_pred EEeecCC
Q 001790 432 LYSYAGS 438 (1012)
Q Consensus 432 vwd~~~~ 438 (1012)
.|+.+-+
T Consensus 91 ~y~~~L~ 97 (219)
T PF07569_consen 91 SYSPDLG 97 (219)
T ss_pred Eeccccc
Confidence 8886643
No 478
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=87.28 E-value=21 Score=31.80 Aligned_cols=122 Identities=9% Similarity=0.085 Sum_probs=72.4
Q ss_pred EEecCcceEEEeeccCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEee-----CCCE
Q 001790 771 LYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK-----NDSY 845 (1012)
Q Consensus 771 ~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----dg~~ 845 (1012)
.|......|++++..|.|.+++.......... ....+ ...+....|++++-.+ +...
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~---~~~~i---------------~~LNin~~italaaG~l~~~~~~D~ 66 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGR---QDSDI---------------SFLNINQEITALAAGRLKPDDGRDC 66 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCcccccccc---ccCce---------------eEEECCCceEEEEEEecCCCCCcCE
Confidence 34455567888888899999875543221100 00001 1112566788886655 4578
Q ss_pred EEEEcCCcEEEEEcCCCeEEEEEcCCCCCeeEEEEecC--CCcEEEEEeCCCeEEEEEccCCeEeEEe
Q 001790 846 VMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQ--DNNIIAIGTEDSTIHIYNVRVDEVKSKL 911 (1012)
Q Consensus 846 la~~sdg~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~--d~~~las~~~dg~v~iwd~~~~~~~~~~ 911 (1012)
|+.|+...+..||+.....+..-.- .+.+.++.+-.- ...-|+..+.+-.|.-||.+..+...+.
T Consensus 67 LliGt~t~llaYDV~~N~d~Fyke~-~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 67 LLIGTQTSLLAYDVENNSDLFYKEV-PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred EEEeccceEEEEEcccCchhhhhhC-ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 8999999999999987765433222 345777766321 1233444555677888887666655544
No 479
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=87.21 E-value=11 Score=41.16 Aligned_cols=142 Identities=11% Similarity=0.128 Sum_probs=82.6
Q ss_pred CceEEE-EEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCC--------CeEEEeeecCCCCCcEEEEeCCC-Cee
Q 001790 507 NIQFIF-STAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG--------SRLFSCGTSKDGDSFLVEWNESE-GTI 576 (1012)
Q Consensus 507 ~~~~l~-s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~--------~~l~~~~~~~~~~~~i~lwd~~~-~~~ 576 (1012)
+..+|+ .|+....+.-.|++.++.+-.+..+..- -+.|.|+. ..|+..+ +..|.-.|.+- |..
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS-----~~svFrIDPR~~gNK 550 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLS-----DYSVFRIDPRARGNK 550 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeec-----ccceEEecccccCCc
Confidence 334443 3445556666677776666666666553 45666643 2344433 55555555543 322
Q ss_pred eee--ecCC-CCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCCcE
Q 001790 577 KRT--YAGF-RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (1012)
Q Consensus 577 ~~~--~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i 653 (1012)
+.. .... ......+. ......++++++..|.|++||.-..+....++.-+. .|..+..+.+|.++++.+.. .+
T Consensus 551 i~v~esKdY~tKn~Fss~-~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~--aIk~idvta~Gk~ilaTCk~-yl 626 (776)
T COG5167 551 IKVVESKDYKTKNKFSSG-MTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGD--AIKHIDVTANGKHILATCKN-YL 626 (776)
T ss_pred eeeeeehhcccccccccc-ccccCceEEEecCCCceeeehhhcchhhhcCccccc--ceeeeEeecCCcEEEEeecc-eE
Confidence 211 1111 11112222 233457999999999999999766555445554444 78899999999988777654 66
Q ss_pred EEEEcc
Q 001790 654 KILANA 659 (1012)
Q Consensus 654 ~iwd~~ 659 (1012)
.+-|+.
T Consensus 627 lL~d~~ 632 (776)
T COG5167 627 LLTDVP 632 (776)
T ss_pred EEEecc
Confidence 666654
No 480
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.18 E-value=9.9 Score=46.67 Aligned_cols=170 Identities=13% Similarity=0.229 Sum_probs=95.4
Q ss_pred CCCccceEeecCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEE
Q 001790 332 DLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (1012)
Q Consensus 332 ~~~~~~~~~~~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 411 (1012)
+.|...+..+.|...=+.|-+-|-=.+.=+ +.|+.+.+|+++++..... +.+-+..|..
T Consensus 66 ~IP~el~eq~~~~~~~~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~-------------------~d~~shtIl~ 124 (1311)
T KOG1900|consen 66 NIPDELLEQFSNIECKTDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAE-------------------YDGLSHTILK 124 (1311)
T ss_pred cCCHHHHHHhcCcceeeeeccchhhcceEE--EeCCeEEEEEcCCCCcccc-------------------ccchhhhhee
Confidence 344455555555555555555554332223 3589999999998654432 3333444444
Q ss_pred EE--------EccCCCEEEEEECCCeEEEEeecCCCcce------eeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcE
Q 001790 412 VA--------WSPDGNYVGVAFTKHLIQLYSYAGSNDLR------QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1012)
Q Consensus 412 v~--------~spdg~~las~~~d~~v~vwd~~~~~~~~------~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v 477 (1012)
|. |-|.=+++++-+.--.|.++-+.-.+... ....+......|.++....+|+ .|++ |.||.|
T Consensus 125 V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~~-G~dg~l 201 (1311)
T KOG1900|consen 125 VGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFFA-GRDGNL 201 (1311)
T ss_pred eeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEEe-ecCCCE
Confidence 43 33333455554445556666554222111 1112223356789999888888 5554 456644
Q ss_pred EE--Ee-CCC---c-c----------------eeeec-CCccCEEEEeccccCCceEEEEEecCCeEEEEEcCC
Q 001790 478 KV--WE-LSG---R-K----------------LFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (1012)
Q Consensus 478 ~v--wd-~~~---~-~----------------~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~ 527 (1012)
+- |. .+| + + +..+. .+.++|..+++.. ...++++-+..|+|.+||+..
T Consensus 202 yEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~--SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 202 YELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN--SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred EEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc--ccceeeeeccCceEEEEEccC
Confidence 32 11 111 1 0 11223 5677899998854 346889999999999999875
No 481
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=87.18 E-value=17 Score=36.65 Aligned_cols=145 Identities=13% Similarity=0.134 Sum_probs=80.3
Q ss_pred EEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEEeCC---CeEEEEEccC----CeEe---EEecccCCCeEEEEE
Q 001790 854 ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED---STIHIYNVRV----DEVK---SKLKGHQKRITGLAF 923 (1012)
Q Consensus 854 i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~~d---g~v~iwd~~~----~~~~---~~~~~h~~~V~~l~~ 923 (1012)
-.+||+.+++....-.........=++.+ ||++|.+|+.. ..+++++..+ .... ..+ .....--.+..
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~-dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m-~~~RWYpT~~~ 125 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLP-DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDM-QSGRWYPTATT 125 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCC-CCCEEEeCCCCccccceEEEecCCCCCCCCceECcccc-cCCCccccceE
Confidence 35788888766433222222333345778 89999988752 2688887644 1111 011 12233344556
Q ss_pred cCCCCEEEEEeCCC-cEEEEeCCCCCccccEEEecCC----CCCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEE
Q 001790 924 STSLNILVSSGADA-QLCVWSIDTWEKRKSVTIHIPA----GKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIR 998 (1012)
Q Consensus 924 spdg~~l~s~s~Dg-~i~vwd~~~~~~~~~~~~~~~~----~~~~~~v~~l~fs~d~~~l~~~~d~~i~vwd~~~~~~~~ 998 (1012)
-|||+.|+.||.+. +..+|.-..... ....+.... .....---.+...|||++++.+.. .-.+||..+.+.++
T Consensus 126 L~DG~vlIvGG~~~~t~E~~P~~~~~~-~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~-~s~i~d~~~n~v~~ 203 (243)
T PF07250_consen 126 LPDGRVLIVGGSNNPTYEFWPPKGPGP-GPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR-GSIIYDYKTNTVVR 203 (243)
T ss_pred CCCCCEEEEeCcCCCcccccCCccCCC-CceeeecchhhhccCccccCceEEEcCCCCEEEEEcC-CcEEEeCCCCeEEe
Confidence 68999999988774 344554422110 111111111 000011135667899999988854 35677999888877
Q ss_pred eecC
Q 001790 999 QVGS 1002 (1012)
Q Consensus 999 ~~~~ 1002 (1012)
.+..
T Consensus 204 ~lP~ 207 (243)
T PF07250_consen 204 TLPD 207 (243)
T ss_pred eCCC
Confidence 7754
No 482
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=87.15 E-value=2 Score=28.79 Aligned_cols=31 Identities=13% Similarity=0.285 Sum_probs=23.0
Q ss_pred cCCCceEEEEEecCCCcEEEEecCC--CeEEEE
Q 001790 342 HQGSTVISMDFHPSHQTLLLVGSSN--GEITLW 372 (1012)
Q Consensus 342 ~h~~~V~~~~~spdg~~llasg~~d--g~v~iw 372 (1012)
.....-.+..|||||++++.+...+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3556788999999999877787777 766666
No 483
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=87.05 E-value=38 Score=36.40 Aligned_cols=173 Identities=18% Similarity=0.197 Sum_probs=93.2
Q ss_pred CCCceEEEEEecCcceEEEeeccCe------eEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeE
Q 001790 763 TSSKVVRLLYTNSAVGLLALGSNGV------QKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPC 836 (1012)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~------i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 836 (1012)
.-+.+..+.+.+++..+++.+.+|. +..+++..... ..+.+.......+-+. .|... .. ..-...+
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~-~G~~~----~~--~~~D~Eg 89 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQG-GIGGVTILDMIPLRDP-DGQPF----PK--NGLDPEG 89 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCC-CccceEeccceeccCC-CCCcC----Cc--CCCChhH
Confidence 3456788999976666777777776 54444433111 1111111111111111 11111 10 1225667
Q ss_pred EEEeeCCCEEEEEc-C------CcEEEEEcCCCeEEEEEc---------------CCCCCeeEEEEecCCCcEEEEEeC-
Q 001790 837 IALSKNDSYVMSAT-G------GKISLFNMMTFKVMTTFM---------------SPPPASTFLAFHPQDNNIIAIGTE- 893 (1012)
Q Consensus 837 ~~~s~dg~~la~~s-d------g~i~lwd~~~~~~~~~~~---------------~~~~~i~~l~~sp~d~~~las~~~- 893 (1012)
+++.++|.++++.- + ..|..++.. |+....+. ......-+|+++| +++.|.++.+
T Consensus 90 i~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~~E~ 167 (326)
T PF13449_consen 90 IAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAAMES 167 (326)
T ss_pred eEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEEECc
Confidence 88888888887775 5 568888876 66554441 1223477899999 8885555442
Q ss_pred ----CC--e-------EEEE--EccC-CeEeE----Eecc-----cCCCeEEEEEcCCCCEEEEEe-----CCCcEEEEe
Q 001790 894 ----DS--T-------IHIY--NVRV-DEVKS----KLKG-----HQKRITGLAFSTSLNILVSSG-----ADAQLCVWS 943 (1012)
Q Consensus 894 ----dg--~-------v~iw--d~~~-~~~~~----~~~~-----h~~~V~~l~~spdg~~l~s~s-----~Dg~i~vwd 943 (1012)
|+ . ++++ |..+ ++... .+.. ....|+.+.+-+++++|+--- ....++|+.
T Consensus 168 ~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~ 247 (326)
T PF13449_consen 168 PLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYR 247 (326)
T ss_pred cccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEE
Confidence 22 1 4554 4443 32222 2222 346788999999999877422 233455554
Q ss_pred CC
Q 001790 944 ID 945 (1012)
Q Consensus 944 ~~ 945 (1012)
+.
T Consensus 248 v~ 249 (326)
T PF13449_consen 248 VD 249 (326)
T ss_pred EE
Confidence 43
No 484
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=86.98 E-value=22 Score=41.19 Aligned_cols=167 Identities=9% Similarity=0.159 Sum_probs=94.9
Q ss_pred CCCCEeEEEEeeCCCEEEEEc-CCcEEEEEcCCCeEEE--EEcC-CCC------CeeEEEEecCCCcEEEEEeC-CC---
Q 001790 830 LEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMT--TFMS-PPP------ASTFLAFHPQDNNIIAIGTE-DS--- 895 (1012)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~s-dg~i~lwd~~~~~~~~--~~~~-~~~------~i~~l~~sp~d~~~las~~~-dg--- 895 (1012)
-...|..+.|.++++.+++.. +|.|.+||...+.... .+.. +.. -|....... +..++.+.+. ++
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~-~~~~ll~v~~~~~~k~ 206 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELEN-GKDLLLTVSQLSNSKL 206 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhccccccc-CCceEEEEEEcCCCcE
Confidence 466788999999999888877 8999999993332211 2211 111 122222112 3455555554 32
Q ss_pred eEEEEEcc-CCeEeEEec---ccCCCeEEEEEc-CCCCEEEEEeCCCcEEEEeCCCCCccccEEEe-cCCCCCCCCceEE
Q 001790 896 TIHIYNVR-VDEVKSKLK---GHQKRITGLAFS-TSLNILVSSGADAQLCVWSIDTWEKRKSVTIH-IPAGKTPTGDTRV 969 (1012)
Q Consensus 896 ~v~iwd~~-~~~~~~~~~---~h~~~V~~l~~s-pdg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~v~~l 969 (1012)
..+++.+. +...+..+. .+........|. .+|.+..- .+++|.+|++...+...++.+. ...... ..+.++
T Consensus 207 ~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~-~~~vSl 283 (670)
T PF10395_consen 207 SYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKES-DDLVSL 283 (670)
T ss_pred EEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhcccc-ccceEe
Confidence 67778871 122222222 122222233333 25555443 6789999999998877777666 333322 234444
Q ss_pred EEcCCCCEEEEEeCCeEEEEECCCceEEEeec
Q 001790 970 QFNADQVRMLVVHETQLAIYDASKMERIRQVG 1001 (1012)
Q Consensus 970 ~fs~d~~~l~~~~d~~i~vwd~~~~~~~~~~~ 1001 (1012)
. .|...+++.+.++.|++.|+.-...+.++.
T Consensus 284 ~-~~s~nRvLLs~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 284 K-PPSPNRVLLSVNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred e-cCCCCeEEEEcCCEEEEEeehhhhhhhhhh
Confidence 3 455566667778899999987555555543
No 485
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.87 E-value=50 Score=35.77 Aligned_cols=135 Identities=13% Similarity=0.061 Sum_probs=82.0
Q ss_pred CCCEEEEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEe-CCCcce----eeec
Q 001790 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL----FNFE 491 (1012)
Q Consensus 417 dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd-~~~~~~----~~~~ 491 (1012)
|.+..+.|-..|.+.=|-++....-.....-....++|.++.||+|++ .+|.--.|++|.+++ ...+.. .+.+
T Consensus 32 DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk--ilAVQR~~~~v~f~nf~~d~~~l~~~~~ck 109 (657)
T KOG2377|consen 32 DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK--ILAVQRTSKTVDFCNFIPDNSQLEYTQECK 109 (657)
T ss_pred cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcc--eEEEEecCceEEEEecCCCchhhHHHHHhc
Confidence 444444444555566676654332111111224567999999999999 899999999999999 333222 2223
Q ss_pred CCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCc-eeeecCCCCcEEEEEEccCCCeEEEee
Q 001790 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1012)
Q Consensus 492 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~ 557 (1012)
..+..|.+.+|..+. -++..+..| +-+|-...... ....+.+...|.-..|.++.+.++.++
T Consensus 110 ~k~~~IlGF~W~~s~---e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 110 TKNANILGFCWTSST---EIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred cCcceeEEEEEecCe---eEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 344568888886543 344444333 55565544332 334455666788889999988776654
No 486
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=86.52 E-value=51 Score=35.46 Aligned_cols=71 Identities=10% Similarity=-0.043 Sum_probs=34.7
Q ss_pred CceEEEEEecC-----CeEEEEEcCCCCceeeecCCC-CcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeee
Q 001790 507 NIQFIFSTAID-----GKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1012)
Q Consensus 507 ~~~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~ 577 (1012)
++.+.+.|+.. ..+..||+.+..-...-.... ......+...+++..+.++.+......+..||..+.+-.
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 34666666642 357777776543322111111 122223334456666666642211123568888876543
No 487
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=86.21 E-value=3.4 Score=39.52 Aligned_cols=31 Identities=16% Similarity=0.240 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCC------CEEEEEeCCCcEEEEeCCC
Q 001790 916 KRITGLAFSTSL------NILVSSGADAQLCVWSIDT 946 (1012)
Q Consensus 916 ~~V~~l~~spdg------~~l~s~s~Dg~i~vwd~~~ 946 (1012)
..|.+++|||-| -+||+.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 478999999954 4789999999999998774
No 488
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=85.95 E-value=4.7 Score=46.89 Aligned_cols=136 Identities=11% Similarity=0.107 Sum_probs=77.8
Q ss_pred ceEEEEEecC-CCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEc--cCCCEEE
Q 001790 346 TVISMDFHPS-HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS--PDGNYVG 422 (1012)
Q Consensus 346 ~V~~~~~spd-g~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--pdg~~la 422 (1012)
.|+.|....= |..+|+.+..||.|.+|.+++=-......-.-.+...............-...+..+++. ...++||
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEE
Confidence 4555544432 233788889999999997632100000000000000000000111122235589999998 8889999
Q ss_pred EEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCC--c--eEEEEEcCCCcEEEEe
Q 001790 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNK--L--LCVVTCGDDKLIKVWE 481 (1012)
Q Consensus 423 s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~--~--~~l~s~~~d~~v~vwd 481 (1012)
+++....|.||-............-..|...|-+|+|.++.. . ..+++++-.|.+.+|+
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK 244 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence 999988898887665321111101113667899999987651 1 3688889999988877
No 489
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=85.89 E-value=65 Score=36.09 Aligned_cols=62 Identities=15% Similarity=0.097 Sum_probs=38.7
Q ss_pred CCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCC
Q 001790 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1012)
Q Consensus 344 ~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 418 (1012)
-...+.|+|.|||+ +|++--..|.|++++-.++.......+ .........+....|+++|+-
T Consensus 29 L~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l------------~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTL------------PEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecC------------CceeccCCCCceeeEEECCCc
Confidence 44789999999998 677654469999998655432111000 000011125678899999874
No 490
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=85.45 E-value=0.11 Score=55.44 Aligned_cols=141 Identities=16% Similarity=0.165 Sum_probs=93.0
Q ss_pred eEEEEEecCcceEEEeeccCeeEeeeccccccCCCCCccccccceeeccCCCceeeecccCCCCCCCEeEEEEeeCCCEE
Q 001790 767 VVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYV 846 (1012)
Q Consensus 767 i~~l~~s~~g~~l~~~~~dg~i~~w~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 846 (1012)
.....+.+.+..++.++.+..+..||-.... +. ..........+++..+|..+
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~-----------------------~l----e~n~tg~aldm~wDkegdvl 89 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQV-----------------------IL----ELNPTGKALDMAWDKEGDVL 89 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcce-----------------------ec----ccCCchhHhhhhhccccchh
Confidence 3445667777778888888888887632211 10 00133445567777788777
Q ss_pred EEEc--CCcEEEEEcCCCeEEEEEc-CCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeEEecccCCCeEEEEE
Q 001790 847 MSAT--GGKISLFNMMTFKVMTTFM-SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAF 923 (1012)
Q Consensus 847 a~~s--dg~i~lwd~~~~~~~~~~~-~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~ 923 (1012)
++.. .+.+.+||+.+.... ++. +....-.-+.|++ +...++.|...|.+.|++..+.+.+-..-.|...++++++
T Consensus 90 avlAek~~piylwd~n~eytq-qLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av 167 (615)
T KOG2247|consen 90 AVLAEKTGPIYLWDVNSEYTQ-QLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAV 167 (615)
T ss_pred hhhhhcCCCeeechhhhhhHH-HHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEe
Confidence 6654 688999999754322 222 1111222378999 8899999999999999998877666555459999999999
Q ss_pred cCCCCEEEEEeCCC
Q 001790 924 STSLNILVSSGADA 937 (1012)
Q Consensus 924 spdg~~l~s~s~Dg 937 (1012)
.+.+. .+.++.|.
T Consensus 168 ~lEd~-vil~dcd~ 180 (615)
T KOG2247|consen 168 TLEDY-VILCDCDN 180 (615)
T ss_pred cccce-eeecCcHH
Confidence 98764 34444443
No 491
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.58 E-value=24 Score=44.04 Aligned_cols=72 Identities=15% Similarity=0.248 Sum_probs=45.4
Q ss_pred CCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCCeeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 001790 537 PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1012)
Q Consensus 537 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 616 (1012)
+...+.+..+.......+... .+.+.+|+.........+..... ..+.++..++++..||.+.+||...
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~h~Dgs~~fWd~s~ 265 (993)
T KOG1983|consen 197 IEYESLQVLYYSPTKILIGFN-----RGLVVIKDRASKYVQSAYLPNGQ------LESRDGSHFVSYHTDGSYAFWDVSS 265 (993)
T ss_pred cccccceeeeecCCCcceeee-----eeeeeehhcccccchhhcccccc------cCccCCceEEEEEecCCEEeeecCC
Confidence 334455555555554444443 55666676554444444433322 1178899999999999999999998
Q ss_pred Cee
Q 001790 617 VNI 619 (1012)
Q Consensus 617 ~~~ 619 (1012)
++.
T Consensus 266 g~~ 268 (993)
T KOG1983|consen 266 GKL 268 (993)
T ss_pred Cce
Confidence 765
No 492
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=83.75 E-value=15 Score=38.01 Aligned_cols=113 Identities=19% Similarity=0.235 Sum_probs=73.7
Q ss_pred CCeEEEEEccCCeEeEEecccCCCeEEEEEcCCCCEEEEEe------CCCcEEEEeCCCCCccccEEEecCC---CCCCC
Q 001790 894 DSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSG------ADAQLCVWSIDTWEKRKSVTIHIPA---GKTPT 964 (1012)
Q Consensus 894 dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s------~Dg~i~vwd~~~~~~~~~~~~~~~~---~~~~~ 964 (1012)
-..|++||..+.+-...-.+-.+.|+.+.|..+.++++.|. ....+..||+.+.... .... ..-++
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-----~~~~~~s~~ipg 89 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-----SLGGGSSNSIPG 89 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-----ecCCcccccCCC
Confidence 34699999887765555455678899999997777777664 3557899999886532 1111 11236
Q ss_pred CceEEEEcC-CC-CEEEEE----eCCeEEEEECCCceEEEe--ecC-CCeeEEEec
Q 001790 965 GDTRVQFNA-DQ-VRMLVV----HETQLAIYDASKMERIRQ--VGS-PHICSIIFC 1011 (1012)
Q Consensus 965 ~v~~l~fs~-d~-~~l~~~----~d~~i~vwd~~~~~~~~~--~~~-~~i~~~~f~ 1011 (1012)
+|..+.+.. |+ ++.++| .+..|..||-.+...+.. +.. ..|.++.+-
T Consensus 90 pv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~ 145 (281)
T PF12768_consen 90 PVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVL 145 (281)
T ss_pred cEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEE
Confidence 788887743 33 344444 234688898888877777 332 457766553
No 493
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=82.94 E-value=5.2 Score=27.19 Aligned_cols=39 Identities=15% Similarity=0.120 Sum_probs=27.9
Q ss_pred eCCCEEEEEc--CCcEEEEEcCCCeEEEEEcCCCCCeeEEEE
Q 001790 841 KNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAF 880 (1012)
Q Consensus 841 ~dg~~la~~s--dg~i~lwd~~~~~~~~~~~~~~~~i~~l~~ 880 (1012)
||+++|.++. +++|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 5788777765 688999999999888777653 23344444
No 494
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=82.46 E-value=61 Score=33.11 Aligned_cols=162 Identities=12% Similarity=0.083 Sum_probs=93.6
Q ss_pred cCCCceEEEEEecCCCcEEEEecCCCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE
Q 001790 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1012)
Q Consensus 342 ~h~~~V~~~~~spdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 421 (1012)
.-.+-+..+.|+.+ ++..+..+.-++|.|+.+........ .+. -.+--.++..| |++.
T Consensus 84 ~~~~l~~Dv~vse~---yvyvad~ssGL~IvDIS~P~sP~~~~----------------~ln-t~gyaygv~vs--Gn~a 141 (370)
T COG5276 84 NARDLFADVRVSEE---YVYVADWSSGLRIVDISTPDSPTLIG----------------FLN-TDGYAYGVYVS--GNYA 141 (370)
T ss_pred ehhhhhheeEeccc---EEEEEcCCCceEEEeccCCCCcceec----------------ccc-CCceEEEEEec--CCEE
Confidence 35567778888755 45566667778899987765432211 111 12334455554 8888
Q ss_pred EEEECCCeEEEEeecCCCcceeeeeeeccccCeEEEEEeCCCCceEEEEEcCCCcEEEEeCCCcceeeecCC---ccCEE
Q 001790 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH---EAPVY 498 (1012)
Q Consensus 422 as~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~h---~~~v~ 498 (1012)
.++.-|.-.-+.|+.+.........+......-+.++.| |+ +...+..|+-+.+-|.+...--.|.+| ...+.
T Consensus 142 YVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn--~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~ 217 (370)
T COG5276 142 YVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GN--YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTY 217 (370)
T ss_pred EEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cC--eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceE
Confidence 888755557788998776554433444445555677776 55 556667789999999443332233333 22566
Q ss_pred EEeccccCCceEEEEEecCCeEEEEEcCCCCceee
Q 001790 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD 533 (1012)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~ 533 (1012)
++..++ +..++ .-.+--+.+-|.+.......
T Consensus 218 sv~vsd--nr~y~--vvy~egvlivd~s~~ssp~~ 248 (370)
T COG5276 218 SVSVSD--NRAYL--VVYDEGVLIVDVSGPSSPTV 248 (370)
T ss_pred EEEecC--CeeEE--EEcccceEEEecCCCCCceE
Confidence 666543 32233 23334455666666554443
No 495
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=82.34 E-value=85 Score=34.63 Aligned_cols=40 Identities=10% Similarity=0.035 Sum_probs=18.8
Q ss_pred EEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECC
Q 001790 609 IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1012)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d 650 (1012)
+.+||..+.+....-..+.. .-...+..-++++++.|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~--r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQG--LAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCC--ccceEEEEeCCEEEEEcCCC
Confidence 45678776543322211111 11222334466777777653
No 496
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=82.15 E-value=35 Score=38.92 Aligned_cols=144 Identities=10% Similarity=0.017 Sum_probs=70.6
Q ss_pred CcEEEEEcCCCeEEEEEcCCCCCeeEEEEecCCCcEEEEEeCCCeEEEEEccCCeEeEEecccCCC---eEEEEEcCCCC
Q 001790 852 GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKR---ITGLAFSTSLN 928 (1012)
Q Consensus 852 g~i~lwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las~~~dg~v~iwd~~~~~~~~~~~~h~~~---V~~l~~spdg~ 928 (1012)
+...++|. .|..+..+.........+...+ +|.+++... ..++.+|+. |+.+..+..-.+. =..+..-|+|+
T Consensus 128 ~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~-nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn 202 (477)
T PF05935_consen 128 SYTYLIDN-NGDVRWYLPLDSGSDNSFKQLP-NGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGN 202 (477)
T ss_dssp EEEEEEET-TS-EEEEE-GGGT--SSEEE-T-TS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-
T ss_pred ceEEEECC-CccEEEEEccCccccceeeEcC-CCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCC
Confidence 44666665 4555555543222222255667 888776554 778888875 5554443311110 12466778999
Q ss_pred EEEEEe--------------CCCcEEEEeCCCCCccccEEEecC---------------------CCCCCCCceEEEEcC
Q 001790 929 ILVSSG--------------ADAQLCVWSIDTWEKRKSVTIHIP---------------------AGKTPTGDTRVQFNA 973 (1012)
Q Consensus 929 ~l~s~s--------------~Dg~i~vwd~~~~~~~~~~~~~~~---------------------~~~~~~~v~~l~fs~ 973 (1012)
+|+.+. .| .|..+| .+|+.+..+.+.-. .+.....+.++.+.+
T Consensus 203 ~L~l~~~~~~~~~~~~~~~~~D-~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~ 280 (477)
T PF05935_consen 203 LLILASETKYVDEDKDVDTVED-VIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDP 280 (477)
T ss_dssp EEEEEEETTEE-TS-EE---S--EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEET
T ss_pred EEEEEeecccccCCCCccEecC-EEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeC
Confidence 988777 23 244555 55554433221111 011114578999988
Q ss_pred -CCCEEEEE-eCCeEEEEECCCceEEEeecC
Q 001790 974 -DQVRMLVV-HETQLAIYDASKMERIRQVGS 1002 (1012)
Q Consensus 974 -d~~~l~~~-~d~~i~vwd~~~~~~~~~~~~ 1002 (1012)
|+.+|+++ .-..|...|..+++..-.+..
T Consensus 281 ~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~ 311 (477)
T PF05935_consen 281 SDDSIIVSSRHQSAVIKIDYRTGKIKWILGP 311 (477)
T ss_dssp TTTEEEEEETTT-EEEEEE-TTS-EEEEES-
T ss_pred CCCeEEEEcCcceEEEEEECCCCcEEEEeCC
Confidence 67777777 355899999889988766643
No 497
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=82.09 E-value=63 Score=33.01 Aligned_cols=153 Identities=12% Similarity=0.018 Sum_probs=87.3
Q ss_pred cCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCCC
Q 001790 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1012)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~~ 574 (1012)
+-+..+.++ +++.+.+..+.-+++.|+.+.........-.-.-..-.|.-.|++..++.. +..+.+.|+.+.
T Consensus 87 ~l~~Dv~vs----e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadl----ddgfLivdvsdp 158 (370)
T COG5276 87 DLFADVRVS----EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADL----DDGFLIVDVSDP 158 (370)
T ss_pred hhhheeEec----ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeec----cCcEEEEECCCC
Confidence 344455552 257778888888999999887665543322211122334445777777653 445667777654
Q ss_pred ---eeeeeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCCCCcceeEeecCCCEEEEEECCC
Q 001790 575 ---TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN 651 (1012)
Q Consensus 575 ---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg 651 (1012)
++...+..... ....+++| |++-+.+..|+-+.+.|+.+......+........+.++..+++-.+++... .
T Consensus 159 ssP~lagrya~~~~-d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~--e 233 (370)
T COG5276 159 SSPQLAGRYALPGG-DTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD--E 233 (370)
T ss_pred CCceeeeeeccCCC-CceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc--c
Confidence 33334443332 22445555 6677778889999999987654333222212122467777777765555543 3
Q ss_pred cEEEEEccC
Q 001790 652 GFKILANAI 660 (1012)
Q Consensus 652 ~i~iwd~~~ 660 (1012)
.+.+-|..+
T Consensus 234 gvlivd~s~ 242 (370)
T COG5276 234 GVLIVDVSG 242 (370)
T ss_pred ceEEEecCC
Confidence 455555544
No 498
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=82.00 E-value=81 Score=36.02 Aligned_cols=156 Identities=13% Similarity=0.151 Sum_probs=74.4
Q ss_pred eEEEEE---cCCCcEEEEeCCCcceeeecCCccCEEEEeccccCCceEEEEEecCCeEEEEEcCCCCceeeecCCCCc--
Q 001790 466 LCVVTC---GDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHW-- 540 (1012)
Q Consensus 466 ~~l~s~---~~d~~v~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~-- 540 (1012)
+++++. ...+...+.|.+|.....+.........+ ...++|.+++..+ +.+..+|+. ++....+......
T Consensus 116 l~~~~~~~~~~~~~~~~iD~~G~Vrw~~~~~~~~~~~~--~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~ 190 (477)
T PF05935_consen 116 LYFVNGNDWDSSSYTYLIDNNGDVRWYLPLDSGSDNSF--KQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYD 190 (477)
T ss_dssp EEEEEETT--BEEEEEEEETTS-EEEEE-GGGT--SSE--EE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-
T ss_pred EEEEeCCCCCCCceEEEECCCccEEEEEccCcccccee--eEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccc
Confidence 356666 34566777777777665543222111112 2244666665444 778778774 3444444443322
Q ss_pred -EEEEEEccCCCeEEEeee---------cCCCCCcEEEEeCCCCeeeeeecC--C----CC-------------------
Q 001790 541 -CTTMLYSADGSRLFSCGT---------SKDGDSFLVEWNESEGTIKRTYAG--F----RK------------------- 585 (1012)
Q Consensus 541 -v~~~~~s~~~~~l~~~~~---------~~~~~~~i~lwd~~~~~~~~~~~~--~----~~------------------- 585 (1012)
-..+...|+|++|+.+.. ...-+..|..+| .+|+.+..+.. | ..
T Consensus 191 ~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~D 269 (477)
T PF05935_consen 191 FHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRD 269 (477)
T ss_dssp B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSB
T ss_pred cccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCC
Confidence 345667799998887762 011122345555 55655543221 0 00
Q ss_pred -CcceEEEEecCCCEEE-EEeCCCcEEEEeCCCCeeEEEEecCC
Q 001790 586 -KSNGVVQFDTTQNHFL-AVGEDSQIKFWDMDNVNILTSTDAEG 627 (1012)
Q Consensus 586 -~~v~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~ 627 (1012)
.-++++.+.+....|+ ++-.-..|...|..+++....+..++
T Consensus 270 W~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 270 WLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp S--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred ccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 1267788888444444 44455689999988999888886543
No 499
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=81.68 E-value=73 Score=33.44 Aligned_cols=192 Identities=11% Similarity=0.095 Sum_probs=0.0
Q ss_pred CeEEEEEeCCCCceEEEEEcCCC----------cEEEEe-CCCcceeee------cCCccCEEEEeccccCC----ceEE
Q 001790 453 AVNDLAFAYPNKLLCVVTCGDDK----------LIKVWE-LSGRKLFNF------EGHEAPVYSICPHHKEN----IQFI 511 (1012)
Q Consensus 453 ~v~~l~~s~~~~~~~l~s~~~d~----------~v~vwd-~~~~~~~~~------~~h~~~v~~~~~~~~~~----~~~l 511 (1012)
.|..+...++++--.+=+|..+. .|.+|| .+++.++++ ....+.+..+.+...+. +-..
T Consensus 2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Q ss_pred EEEecCCeEEEEEcCCCCceeeecCC-------------------CCcEEEEEEcc---CCCeEEEeeecCCCCCcEEEE
Q 001790 512 FSTAIDGKIKAWLYDTMGSRVDYDAP-------------------GHWCTTMLYSA---DGSRLFSCGTSKDGDSFLVEW 569 (1012)
Q Consensus 512 ~s~~~dg~i~~wd~~~~~~~~~~~~~-------------------~~~v~~~~~s~---~~~~l~~~~~~~~~~~~i~lw 569 (1012)
++-+..+.|.++|+.+++........ ...+..++.+| +|++|+... -..-.+|
T Consensus 82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~-----lss~~ly 156 (287)
T PF03022_consen 82 ITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHP-----LSSRKLY 156 (287)
T ss_dssp EEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEE-----TT-SEEE
T ss_pred EeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEe-----CCCCcEE
Q ss_pred eCCCCeee-------------eeecCCCCCcceEEEEecCCCEEEEEeCCCcEEEEeCCC----CeeEEEEecCCCCCCc
Q 001790 570 NESEGTIK-------------RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN----VNILTSTDAEGGLPNL 632 (1012)
Q Consensus 570 d~~~~~~~-------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~v 632 (1012)
.+.+..+. ....+........++++++|..+++--..+.|..|+... ........-......+
T Consensus 157 ~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~p 236 (287)
T PF03022_consen 157 RVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWP 236 (287)
T ss_dssp EEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSE
T ss_pred EEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeecc
Q ss_pred ceeEeec--CCCEEEEEEC
Q 001790 633 PRLRFSK--EGNLLAVTTA 649 (1012)
Q Consensus 633 ~~v~~s~--~g~~l~~~~~ 649 (1012)
..+.+.+ +|.+.+....
T Consensus 237 d~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 237 DGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp EEEEE-T--TS-EEEEE-S
T ss_pred ceeeeccccCceEEEEECc
No 500
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=81.42 E-value=19 Score=36.32 Aligned_cols=138 Identities=13% Similarity=0.118 Sum_probs=78.7
Q ss_pred EEEEcCCCCceeeecCCCCcEEEEEEccCCCeEEEeeecCCCCCcEEEEeCCC----Ceeeeeec-CCCCCcceEEEEec
Q 001790 521 KAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE----GTIKRTYA-GFRKKSNGVVQFDT 595 (1012)
Q Consensus 521 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~lwd~~~----~~~~~~~~-~~~~~~v~~~~~s~ 595 (1012)
.+||+.+.+.+.........+.+-++.+||+++.+|+. .++...+++++..+ ......-. -...........-+
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~-~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGD-NDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCC-CccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 46888886655443344445666678899999999885 34566788888654 11111100 11112344466678
Q ss_pred CCCEEEEEeCCC-cEEEEeCCC--CeeEEE--Eec---CCCCCCcceeEeecCCCEEEEEECCCcEEEEEccCC
Q 001790 596 TQNHFLAVGEDS-QIKFWDMDN--VNILTS--TDA---EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1012)
Q Consensus 596 ~~~~l~~~~~dg-~i~iwd~~~--~~~~~~--~~~---~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iwd~~~~ 661 (1012)
||+.|+.||.+. ...+|.... ...... +.. .....--..+...|+|++++.+..+. .|||..+.
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n 199 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTN 199 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCC
Confidence 999999988664 344554421 111111 110 01111234667789999998887653 45677665
Done!