Query 001790
Match_columns 1012
No_of_seqs 954 out of 4831
Neff 10.7
Searched_HMMs 29240
Date Tue Mar 26 17:22:08 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001790.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1084-1088//hhsearch_pdb/001790hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 569.3 58.2 598 338-1012 609-1228(1249)
2 2ymu_A WD-40 repeat protein; u 1.0 1 1 541.1 71.8 561 338-990 10-577 (577)
3 1nr0_A Actin interacting prote 1.0 1 1 539.1 66.6 547 327-992 43-610 (611)
4 2ymu_A WD-40 repeat protein; u 1.0 1 1 523.3 67.6 542 399-1012 9-559 (577)
5 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 521.7 50.6 544 327-992 641-1248(1249)
6 1nr0_A Actin interacting prote 1.0 1 1 513.7 61.0 554 343-1012 17-591 (611)
7 1pgu_A Actin interacting prote 1.0 1 1 495.7 62.3 547 342-994 16-615 (615)
8 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 488.4 62.0 616 335-1002 8-792 (902)
9 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 456.0 54.9 570 327-990 43-828 (902)
10 1pgu_A Actin interacting prote 1.0 1 1 455.6 57.5 538 327-946 43-614 (615)
No 1
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=569.32 Aligned_cols=598 Identities=14% Similarity=0.185 Sum_probs=474.5
Q ss_pred EEEECCCCCEEEEEEECCCCCEEEEECCCCEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCC
Q ss_conf 59630799468999736899189994177709999836885110345310135546865210011479966689999659
Q 001790 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1012)
Q Consensus 338 ~~~~~h~~~V~~~~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spd 417 (1012)
....+|.+.|++++|+|+|+ ++++|+.||.|++||+.+++.+.. +.+|...|.+++|+|+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~ 668 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFSSD 668 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTT
T ss_pred EEEECCCCCEEEEEECCCCC-EEEEEECCCEEEEEECCCCCEEEE-------------------ECCCCCCEEEEEEECC
T ss_conf 78716666489999879999-899994889499999899978887-------------------6067777899999269
Q ss_pred CCEEEEEECCCEEEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEE-CCCCCEEEECCCCCC
Q ss_conf 9989999779919999602898530002442354676799982799923999974999399996-789603420488448
Q 001790 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (1012)
Q Consensus 418 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~ 496 (1012)
++++++++.|+.|++||+.+++.+. .+.+|...|.+++|++++...++++++.|+.|++|| .+++.+..+.+|...
T Consensus 669 ~~~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~ 745 (1249)
T 3sfz_A 669 DSYIATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNS 745 (1249)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSC
T ss_pred CCEEEEEECCCEEEEEECCCCCEEE---EECCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCHHHEECCCCCC
T ss_conf 9989998189959998779993689---9958997379999840899659999808970999989996342201277797
Q ss_pred EEEEECCCCCCCEEEEEEECCCEEEEEECCCCCCEEEECCC-------------CCCEEEEEECCCCCEEEEEEECCCCC
Q ss_conf 89983002689429999941892999974889722430699-------------98189999926999699953157999
Q 001790 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-------------GHWCTTMLYSADGSRLFSCGTSKDGD 563 (1012)
Q Consensus 497 v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~v~~i~~s~~~~~l~~~~~~~~~d 563 (1012)
|.+++|++ ++..+++++.||.|++||+........+... ...+.+++|+|+|+.+++++ +
T Consensus 746 v~~~~~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-----~ 818 (1249)
T 3sfz_A 746 VNHCRFSP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-----K 818 (1249)
T ss_dssp EEEEEECS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-----T
T ss_pred EEEEEEEC--CCCEEEEEECCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEC-----C
T ss_conf 88999925--9998999978985999968888655302023210246776445650179999978998899975-----8
Q ss_pred CCEEEEECCCCEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCCCCCEEEEECCCCE
Q ss_conf 70999807988134453077788500999816999999995899299995799815899716999999663686169999
Q 001790 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNL 643 (1012)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~g~~ 643 (1012)
+.+.+||..++.....+...+...+.+++|+|++..+++++.||.|++|++.++..+..+..+ ...|.+++|+|++..
T Consensus 819 ~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h--~~~v~~v~~spdg~~ 896 (1249)
T 3sfz_A 819 NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGH--LSWVHGVMFSPDGSS 896 (1249)
T ss_dssp TEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSE
T ss_pred CCEEEEEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEECCCC--CCCEEEEEECCCCCE
T ss_conf 959999956897235774787776079998278888999947986999986789565322787--665689999899998
Q ss_pred EEEEECCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCC
Q ss_conf 9999789939999936784232001388621124764002202364442346898885212369998--87533589988
Q 001790 644 LAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVR--PSPIINGVDPT 721 (1012)
Q Consensus 644 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 721 (1012)
+++++.|+.+++|+..+.......... ....+.+.+++..++.........+....... ...........
T Consensus 897 l~s~s~dg~v~vw~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 968 (1249)
T 3sfz_A 897 FLTASDDQTIRVWETKKVCKNSAIVLK--------QEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCC 968 (1249)
T ss_dssp EEEEETTSCEEEEEHHHHHSCCSSSEE--------EEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEE
T ss_pred EEEEECCCEEEEEECCCCCEEEEECCC--------CEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEECCCCCEEEEE
T ss_conf 999958972898874665201021133--------103689759986899813776248984476508972567278999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCC
Q ss_conf 88889873236656889874002785067447996089888877559999833863599830257057644145656999
Q 001790 722 SRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPS 801 (1012)
Q Consensus 722 ~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~ 801 (1012)
+++++..+++++.++.+++|++... .. ...... |...|.+++|+|+++.+++++.||.+++|++..+..
T Consensus 969 ~sp~g~~l~~g~~~g~i~i~d~~~~----~~-~~~~~~---h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~--- 1037 (1249)
T 3sfz_A 969 LSPHLEYVAFGDEDGAIKIIELPNN----RV-FSSGVG---HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY--- 1037 (1249)
T ss_dssp ECTTSSEEEEEETTSCCEEEETTTT----SC-EEECCC---CSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEE---
T ss_pred ECCCCCEEEEECCCCCEEEEECCCC----CE-EEECCC---CCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCE---
T ss_conf 9589977999869998899975787----23-443036---777168999989999899986998799998799966---
Q ss_pred CCCCCCCCCEEECCCCCCEEEECCCCCCCCCCEEEEEEEECCCEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEEE
Q ss_conf 88212233323115888513320248789987749999328989999809929999968881999971799982699992
Q 001790 802 GKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFH 881 (1012)
Q Consensus 802 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s 881 (1012)
. ...+ |...+.++++++++.+++.+.|+.+++||+.+++....+.+|.+.|++++|+
T Consensus 1038 -------------------~--~~~~--~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s 1094 (1249)
T 3sfz_A 1038 -------------------V--FLQA--HQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAIS 1094 (1249)
T ss_dssp -------------------E--CCBC--CSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEEC
T ss_pred -------------------E--EEEC--CCCCEEEEEECCCCCEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEEC
T ss_conf -------------------8--9852--7873899999089958999788968998889886558874668848999998
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCEE----EEC
Q ss_conf 5999499999589919999820786767750568885899992899989999389949997589977334179----841
Q 001790 882 PQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVT----IHI 957 (1012)
Q Consensus 882 p~~~~~las~~~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~----~~~ 957 (1012)
| +++++++++.||+|++|++.+++++..+.+|.+.|++++|+|++++|++++.||.|++||+.+++...... ...
T Consensus 1095 ~-d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 1173 (1249)
T 3sfz_A 1095 S-DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEG 1173 (1249)
T ss_dssp S-SSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC----
T ss_pred C-CCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCC
T ss_conf 9-999899984999489987898500125506877679999979999899982899799998899945788514444421
Q ss_pred CCCCCCCCCEEEEECCCCCEEEEEECCEEEEEECCCCEEEEEECC--CCEEEEEECC
Q ss_conf 799999980179985799899999297299999999639786269--8756887349
Q 001790 958 PAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQVGS--PHICSIIFCN 1012 (1012)
Q Consensus 958 ~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~--~~i~~~~f~p 1012 (1012)
..+|. +.|++++|+|||+++++++ |.+++||+.+++.+..+.. +.|.+++|+|
T Consensus 1174 ~~~~~-~~v~~l~fs~dg~~l~s~~-g~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~ 1228 (1249)
T 3sfz_A 1174 TATHG-GWVTDVCFSPDSKTLVSAG-GYLKWWNVATGDSSQTFYTNGTNLKKIHVSP 1228 (1249)
T ss_dssp ---CC-SCCCEEEECTTSSCEEEES-SSEEEBCSSSCBCCCCCCCSSCCCCCCEECS
T ss_pred CCCCC-CEEEEEEECCCCCEEEECC-CEEEEEECCCCCEEEEEECCCCCCCEEEECC
T ss_conf 02567-4289999978999899779-8599989888950046400477532799978
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=541.13 Aligned_cols=561 Identities=20% Similarity=0.327 Sum_probs=431.3
Q ss_pred EEEECCCCCEEEEEEECCCCCEEEEECCCCEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCC
Q ss_conf 59630799468999736899189994177709999836885110345310135546865210011479966689999659
Q 001790 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1012)
Q Consensus 338 ~~~~~h~~~V~~~~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spd 417 (1012)
.+..+|.+.|+|++|||||+ +||+|+.|+.|+|||. +++.+. .+.+|.+.|.+++|+||
T Consensus 10 ~~L~GH~~~V~~~a~spdg~-~las~~~d~~v~iWd~-~~~~~~-------------------~l~gh~~~V~~l~fspd 68 (577)
T 2ymu_A 10 NRLEAHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQ-------------------TLTGHSSSVWGVAFSPD 68 (577)
T ss_dssp EEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEECT-TSCEEE-------------------EEECCSSCEEEEEECTT
T ss_pred EEECCCCCCEEEEEECCCCC-EEEEEECCCEEEEEEC-CCCEEE-------------------EEECCCCCEEEEEECCC
T ss_conf 39878998579999989989-9999938998999979-997899-------------------99689899899999899
Q ss_pred CCEEEEEECCCEEEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEECCCCCCE
Q ss_conf 99899997799199996028985300024423546767999827999239999749993999967896034204884488
Q 001790 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPV 497 (1012)
Q Consensus 418 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v 497 (1012)
+++||+++.|++|++||.. ++.+. .+.+|...|.+++|+|+++ ++++++.|+.+++|+..........++...+
T Consensus 69 g~~las~~~d~~i~vWd~~-~~~~~---~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v 142 (577)
T 2ymu_A 69 GQTIASASDDKTVKLWNRN-GQLLQ---TLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRNGQLLQTLTGHSSSV 142 (577)
T ss_dssp SSEEEEEETTSCEEEEETT-SCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTCCEEEEECCCSSCE
T ss_pred CCEEEEEECCCEEEEEECC-CCEEE---EEECCCCCEEEEEECCCCC--EEEEECCCCCEEECCCCCCEEEECCCCCCCE
T ss_conf 9999999698979999899-97899---9978999889999989999--8999807983352023552001104777743
Q ss_pred EEEECCCCCCCEEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCCEEEEECCCCEEE
Q ss_conf 99830026894299999418929999748897224306999818999992699969995315799970999807988134
Q 001790 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1012)
Q Consensus 498 ~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~~~~~ 577 (1012)
..+.+.+ ++..+++++.++.+++|+... ........+...+..+.++|++.++++++ .++.+++|+. +++..
T Consensus 143 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~d~~v~~w~~-~~~~~ 214 (577)
T 2ymu_A 143 WGVAFSP--DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASAS----DDKTVKLWNR-NGQLL 214 (577)
T ss_dssp EEEEECT--TSSCEEEEETTSEEEEECTTS-CEEEEEECCSSCEEEEEECTTSSCEEEEE----TTSEEEEECT-TSCEE
T ss_pred EEEEEEC--CCCCCEECCCCCCEECCCCCE-EEEEECCCCCCCEEEEEECCCCCEEEEEC----CCCEEEEEEC-CCCEE
T ss_conf 5554203--776320025553100000000-00000268776356654169977899985----9998999949-99689
Q ss_pred EEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCEEEEE
Q ss_conf 45307778850099981699999999589929999579981589971699999966368616999999997899399999
Q 001790 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1012)
Q Consensus 578 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~g~~l~~~~~dg~i~iwd 657 (1012)
..+.+|.. .+.+++|+|++..+++++.|+.|++|+.. ++.+..+.. +...|.+++|+|++..+++++.|+.+++|+
T Consensus 215 ~~~~~~~~-~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~~~~~~--~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~ 290 (577)
T 2ymu_A 215 QTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTG--HSSSVNGVAFRPDGQTIASASDDKTVKLWN 290 (577)
T ss_dssp EEEECCSS-CEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEECC--CSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEECCCC-CEEEEEECCCCCEEEEEECCCEEEEEECC-CCEEEEEEC--CCCCEEEEEECCCCCEEEEEECCCEEEEEE
T ss_conf 99946889-88999997999999999189989999599-979999806--889879999968999999995999799994
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCC
Q ss_conf 367842320013886211247640022023644423468988852123699988753358-----998888889873236
Q 001790 658 NAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIING-----VDPTSRSMDKPRTVD 732 (1012)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~ 732 (1012)
... .....+.+ +...+.+++|+|+++.++++.......+...... ....+.+ ....+.+++..++++
T Consensus 291 ~~~--~~~~~~~~-----h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~ 362 (577)
T 2ymu_A 291 RNG--QLLQTLTG-----HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-HLQTLTGHSSSVWGVAFSPDGQTIASA 362 (577)
T ss_dssp TTS--CEEEEECC-----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CCC--CEEEEEEC-----CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC-EEEEEECCCCCEEEEEECCCCCEEEEE
T ss_conf 899--58999706-----8897699999999999999969995999969997-257874788977999998999999999
Q ss_pred CCCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEE
Q ss_conf 65688987400278506744799608988887755999983386359983025705764414565699988212233323
Q 001790 733 DVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQH 812 (1012)
Q Consensus 733 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~g~~~~~~~~~~ 812 (1012)
+.++.+++|+... ... ..+.. |...|.+++|+|+++++++++.|+.+++|+...
T Consensus 363 ~~dg~v~~~~~~~----~~~--~~~~~---~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~----------------- 416 (577)
T 2ymu_A 363 SDDKTVKLWNRNG----QLL--QTLTG---HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG----------------- 416 (577)
T ss_dssp ETTSEEEEEETTC----CEE--EEEEC---CSSCEEEEEECTTSSCEEEEETTSEEEEECTTC-----------------
T ss_pred ECCCEEEEECCCC----CEE--EEECC---CCCCEEEEEECCCCCEEEEEECCCEEEEEECCC-----------------
T ss_conf 6999899990899----789--98527---889748999989999999994999899996999-----------------
Q ss_pred ECCCCCCEEEECCCCCCCCCCEEEEEEEECCCEEEEEC-CCCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEE
Q ss_conf 11588851332024878998774999932898999980-99299999688819999717999826999925999499999
Q 001790 813 WLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG 891 (1012)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~las~ 891 (1012)
..+ ..+.+ |...|.+++|+||++++++++ |+.|++|+. +++.+..+.+|...|++++|+| ++++|+++
T Consensus 417 ------~~~-~~~~~--~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~sp-d~~~las~ 485 (577)
T 2ymu_A 417 ------QLL-QTLTG--HSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASA 485 (577)
T ss_dssp ------CEE-EEEEC--CSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECT-TSCEEEEE
T ss_pred ------CEE-EEECC--CCCCEEEEEECCCCCEEEEECCCCEEEEEEC-CCCEEEEECCCCCCEEEEEECC-CCCEEEEE
T ss_conf ------789-89628--8997579999899999999939998999979-9988999727899778999969-99999999
Q ss_pred ECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCEEEECCCCCCCCCCEEEEE
Q ss_conf 58991999982078676775056888589999289998999938994999758997733417984179999998017998
Q 001790 892 TEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQF 971 (1012)
Q Consensus 892 ~~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~f 971 (1012)
+.|+.|++|+. +++++..+.+|.+.|++++|+||+++|++++.|+.|++||. +++. +....+|. ..|++++|
T Consensus 486 ~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~-----~~~~~~h~-~~v~~~~f 557 (577)
T 2ymu_A 486 SDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQL-----LQTLTGHS-SSVWGVAF 557 (577)
T ss_dssp ETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCE-----EEEEECCS-SCEEEEEE
T ss_pred ECCCEEEEECC-CCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCE-----EEEECCCC-CCEEEEEE
T ss_conf 19897999939-99789998679999899999189999999989699999969-9978-----98971888-88789999
Q ss_pred CCCCCEEEEE-ECCEEEEEE
Q ss_conf 5799899999-297299999
Q 001790 972 NADQVRMLVV-HETQLAIYD 990 (1012)
Q Consensus 972 s~dg~~l~~~-~d~~i~vwd 990 (1012)
+|||++|+++ .|+.|++||
T Consensus 558 s~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 558 SPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CTTSSCEEEEETTSCEEEEC
T ss_pred CCCCCEEEEEECCCEEEEEC
T ss_conf 68999999990899999969
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=539.09 Aligned_cols=547 Identities=15% Similarity=0.196 Sum_probs=388.4
Q ss_pred CCCCCCCCCCCEEEE-CCCCCEEEEEEECCCCCEEEEECCCCEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 356889896505963-0799468999736899189994177709999836885110345310135546865210011479
Q 001790 327 TWSLDDLPRTVAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405 (1012)
Q Consensus 327 ~~~~~~~~~~~~~~~-~h~~~V~~~~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 405 (1012)
+|+..+ .....++ +|.+.|++++|||||+ +||+|+.|++|+|||+.+++.... ..+.+|
T Consensus 43 l~~~~~--~~~~~~~~~h~~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~-----------------~~~~~~ 102 (611)
T 1nr0_A 43 TVPVGS--LTDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILK-----------------TTIPVF 102 (611)
T ss_dssp EEETTC--SSCCEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEE-----------------EEEECS
T ss_pred EECCCC--CCCCEEECCCCCCEEEEEECCCCC-EEEEEECCCCEEEEECCCCCCEEE-----------------EEECCC
T ss_conf 945787--242737658998659999999996-899994899789948989841566-----------------762255
Q ss_pred CCCEEEEEECCCCCEEEEEECC----CEEEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEE
Q ss_conf 9666899996599989999779----919999602898530002442354676799982799923999974999399996
Q 001790 406 PISVSRVAWSPDGNYVGVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1012)
Q Consensus 406 ~~~V~~i~~spdg~~las~~~d----~~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd 481 (1012)
.+.|.+++|+||+++|++++.+ +.|++|| .+.... .+.+|...|.+++|+|++.. .+++++.|++|++||
T Consensus 103 ~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~---~l~gh~~~v~~v~f~p~~~~-~l~s~s~D~~v~lwd 176 (611)
T 1nr0_A 103 SGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNG---NLTGQARAMNSVDFKPSRPF-RIISGSDDNTVAIFE 176 (611)
T ss_dssp SSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCB---CCCCCSSCEEEEEECSSSSC-EEEEEETTSCEEEEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCEEEEEEEE--CCCCCC---EECCCCCCCEEEEECCCCCE-EEEEEECCCEEEEEE
T ss_conf 784489998999997999989977366999963--899763---25478898369998899982-999992898099997
Q ss_pred -CCCCCEEEECCCCCCEEEEECCCCCCCEEEEEEECCCEEEEEECCCCCCEEEEC-------CCCCCEEEEEECCCCCEE
Q ss_conf -789603420488448899830026894299999418929999748897224306-------999818999992699969
Q 001790 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-------APGHWCTTMLYSADGSRL 553 (1012)
Q Consensus 482 -~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~i~~s~~~~~l 553 (1012)
..++....+.+|...|.+++|+| ++.++++++.|+.|++||+.++.....+. .|...|.+++|+|+++++
T Consensus 177 ~~~~~~~~~l~~H~~~V~~v~fsp--dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 254 (611)
T 1nr0_A 177 GPPFKFKSTFGEHTKFVHSVRYNP--DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI 254 (611)
T ss_dssp TTTBEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEE
T ss_pred CCCCEEEEEECCCCCCEEEEEECC--CCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCEE
T ss_conf 999757665200257169999979--999899998999199988999828665136643235667878999997999999
Q ss_pred EEEEECCCCCCCEEEEECCCCEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCCCCC
Q ss_conf 99531579997099980798813445307778850099981699999999589929999579981589971699999966
Q 001790 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (1012)
Q Consensus 554 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1012)
++++ .|+.|++||+.+++....+..+.........+..++..+++++.|+.+++|+...+.....+. +|...|.
T Consensus 255 ~s~s----~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~--gh~~~v~ 328 (611)
T 1nr0_A 255 ASAS----ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRY--GHNKAIT 328 (611)
T ss_dssp EEEE----TTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEEC--CCSSCEE
T ss_pred EEEE----CCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCEEEEEECCCCEEEEECCCCCCCEEEC--CCCCCEE
T ss_conf 9990----898099996888701344047887664068999738879999589968999688997446983--7888889
Q ss_pred EEEEECCCCEEEEEECCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 36861699999999789939999936784232001388621124764002202364442346898885212369998875
Q 001790 634 RLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSP 713 (1012)
Q Consensus 634 ~i~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~ 713 (1012)
+++|+|+++++++++.|+.|++||+.++.... .+ ...+...+.+++|++++.
T Consensus 329 ~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~-~~----~~~h~~~v~~~~~s~~~~----------------------- 380 (611)
T 1nr0_A 329 ALSSSADGKTLFSADAEGHINSWDISTGISNR-VF----PDVHATMITGIKTTSKGD----------------------- 380 (611)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCEEE-CS----SCSCSSCEEEEEECTTSC-----------------------
T ss_pred EEEEECCCCEEEEEECCCCEEEEECCCCCEEE-EC----CCCCCCEEEEEEECCCCC-----------------------
T ss_conf 99991899989999589849999788792563-21----667765078999878996-----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC-EEEEECCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEE
Q ss_conf 33589988888898732366568898740027850674-47996089888877559999833863599830257057644
Q 001790 714 IINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQ-CRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 792 (1012)
Q Consensus 714 ~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~ 792 (1012)
+++++.|+.+++|+......... ..... .......++|++++..++++ .++.+++|+
T Consensus 381 ---------------l~s~s~d~~v~~w~~~~~~~~~~~~~~~~------~~~~~~~~~~s~dg~~~~~~-~~~~v~~~~ 438 (611)
T 1nr0_A 381 ---------------LFTVSWDDHLKVVPAGGSGVDSSKAVANK------LSSQPLGLAVSADGDIAVAA-CYKHIAIYS 438 (611)
T ss_dssp ---------------EEEEETTTEEEEECSSSSSSCTTSCCEEE------CSSCEEEEEECTTSSCEEEE-ESSEEEEEE
T ss_pred ---------------EEEEECCCCEEEEECCCCCCCCCCEEEEE------CCCCCCEEEEECCCCEEEEE-ECCEEEEEE
T ss_conf ---------------99998489668954688543565212001------48997079980799699999-676399984
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCCEEEEEEEECCCEEEEEC-CCCEEEEECCCCEE--EEEEC
Q ss_conf 1456569998821223332311588851332024878998774999932898999980-99299999688819--99971
Q 001790 793 WHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKV--MTTFM 869 (1012)
Q Consensus 793 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~la~~s-dg~i~iwd~~~~~~--~~~~~ 869 (1012)
- +.. . .+ .+...+.+++|+|||+++++++ |++|++|++.++.. ... .
T Consensus 439 ~------------------------~~~-~-~~---~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~ 488 (611)
T 1nr0_A 439 H------------------------GKL-T-EV---PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-I 488 (611)
T ss_dssp T------------------------TEE-E-EE---ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-E
T ss_pred C------------------------CCE-E-EE---ECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEEEC-C
T ss_conf 8------------------------943-4-64---068895499992899899996899739999945992224101-5
Q ss_pred CCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCC-CEEEEE--ECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC
Q ss_conf 79998269999259994999995899199998207-867677--505688858999928999899993899499975899
Q 001790 870 SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV-DEVKSK--LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT 946 (1012)
Q Consensus 870 ~~~~~i~~l~~sp~~~~~las~~~dg~I~iwd~~~-~~~~~~--~~~h~~~V~~i~~spdg~~l~s~s~Dg~i~iwd~~~ 946 (1012)
+|...|++++|+| ++++|++++.|++|++|++.+ ++++.. +.+|.+.|.+++|+|||++|++++.|++|++|++.+
T Consensus 489 ~h~~~v~~v~fsp-dg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~ 567 (611)
T 1nr0_A 489 VHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK 567 (611)
T ss_dssp ECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred CCCCCEEEEEECC-CCCEEEEECCCCCEEEEECCCCCCEEEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEECCC
T ss_conf 7788607999989-999899994899899988577872232102640466425899899899799997997299997887
Q ss_pred CCCCCCEEEECCCCCCCCCCEEEEECCCCCEEEEE-ECCEEEEEECC
Q ss_conf 77334179841799999980179985799899999-29729999999
Q 001790 947 WEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDAS 992 (1012)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~vwd~~ 992 (1012)
+.... .....+|....|.+++|+||++ |+++ .|+.|++|++.
T Consensus 568 ~~~~~---~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 568 PSDHP---IIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp TTSCC---EEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred CCCCC---CHHHCCCCCCCEEEEEECCCCE-EEEECCCCCEEEEECC
T ss_conf 55563---2644467656711899858997-9995288778998444
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=523.27 Aligned_cols=542 Identities=19% Similarity=0.326 Sum_probs=420.6
Q ss_pred CEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEE
Q ss_conf 00114799666899996599989999779919999602898530002442354676799982799923999974999399
Q 001790 399 ASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1012)
Q Consensus 399 ~~~~~~h~~~V~~i~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~ 478 (1012)
+..|.||.+.|++++|||||++||+|+.|+.|+|||. +++.+. ++.+|...|++++|+|+++ +|++++.|++|+
T Consensus 9 ~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~---~l~gh~~~V~~l~fspdg~--~las~~~d~~i~ 82 (577)
T 2ymu_A 9 RNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQ---TLTGHSSSVWGVAFSPDGQ--TIASASDDKTVK 82 (577)
T ss_dssp EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEE---EEECCSSCEEEEEECTTSS--EEEEEETTSCEE
T ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEE---EEECCCCCEEEEEECCCCC--EEEEEECCCEEE
T ss_conf 4398789985799999899899999938998999979-997899---9968989989999989999--999996989799
Q ss_pred EEECCCCCEEEECCCCCCEEEEECCCCCCCEEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEE
Q ss_conf 99678960342048844889983002689429999941892999974889722430699981899999269996999531
Q 001790 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1012)
Q Consensus 479 iwd~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~ 558 (1012)
+||.+++.+..+.+|...|.+++|++ ++.++++++.|+.+++|+... ........+...+..+.+++++..++.++
T Consensus 83 vWd~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~~~~~d~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~- 158 (577)
T 2ymu_A 83 LWNRNGQLLQTLTGHSSSVRGVAFSP--DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASAS- 158 (577)
T ss_dssp EEETTSCEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTC-CEEEEECCCSSCEEEEEECTTSSCEEEEE-
T ss_pred EEECCCCEEEEEECCCCCEEEEEECC--CCCEEEEECCCCCEEECCCCC-CEEEECCCCCCCEEEEEEECCCCCCEECC-
T ss_conf 99899978999978999889999989--999899980798335202355-20011047777435554203776320025-
Q ss_pred CCCCCCCEEEEECCCCEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCCCCCEEEEE
Q ss_conf 57999709998079881344530777885009998169999999958992999957998158997169999996636861
Q 001790 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1012)
Q Consensus 559 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s 638 (1012)
.+..+.+|+... ........+.. .+..+.++|++..+++++.|+.|++|+. +++.+..+..+ ...+.+++|+
T Consensus 159 ---~~~~~~~~~~~~-~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~--~~~v~~~~~s 230 (577)
T 2ymu_A 159 ---DDKTVKLWNRNG-QLLQTLTGHSS-SVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH--SSSVRGVAFS 230 (577)
T ss_dssp ---TTSEEEEECTTS-CEEEEEECCSS-CEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECC--SSCEEEEEEC
T ss_pred ---CCCCEECCCCCE-EEEEECCCCCC-CEEEEEECCCCCEEEEECCCCEEEEEEC-CCCEEEEEECC--CCCEEEEEEC
T ss_conf ---553100000000-00000268776-3566541699778999859998999949-99689999468--8988999997
Q ss_pred CCCCEEEEEECCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 69999999978993999993678423200138862112476400220236444234689888521236999887533589
Q 001790 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGV 718 (1012)
Q Consensus 639 ~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1012)
|++.++++++.|+.+++|+... .....+.+ +..++.+++|+|+++.++++.......+..... .....+.+.
T Consensus 231 ~dg~~l~~~~~d~~i~~w~~~~--~~~~~~~~-----~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~-~~~~~~~~h 302 (577)
T 2ymu_A 231 PDGQTIASASDDKTVKLWNRNG--QLLQTLTG-----HSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG-QLLQTLTGH 302 (577)
T ss_dssp TTSSCEEEEETTSCEEEECTTS--CEEEEECC-----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCC
T ss_pred CCCCEEEEEECCCEEEEEECCC--CEEEEEEC-----CCCCEEEEEECCCCCEEEEEECCCEEEEEECCC-CEEEEEECC
T ss_conf 9999999991899899995999--79999806-----889879999968999999995999799994899-589997068
Q ss_pred -----CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEEC
Q ss_conf -----988888898732366568898740027850674479960898888775599998338635998302570576441
Q 001790 719 -----DPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKW 793 (1012)
Q Consensus 719 -----~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~ 793 (1012)
...+.+++..+++++.|+.+++|+... ... ..+.. |...+.+++|+|++..+++++.+|.+++|+.
T Consensus 303 ~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~----~~~--~~~~~---~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~ 373 (577)
T 2ymu_A 303 SSSVWGVAFSPDGQTIASASDDKTVKLWNRNG----QHL--QTLTG---HSSSVWGVAFSPDGQTIASASDDKTVKLWNR 373 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTS----CEE--EEECC---CSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CCCEEEEEECCCCCEEEEEECCCEEEEEECCC----CEE--EEEEC---CCCCEEEEEECCCCCEEEEEECCCEEEEECC
T ss_conf 89769999999999999996999599996999----725--78747---8897799999899999999969998999908
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCCEEEEEEEECCCEEEEEC-CCCEEEEECCCCEEEEEECCCC
Q ss_conf 456569998821223332311588851332024878998774999932898999980-9929999968881999971799
Q 001790 794 HRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPP 872 (1012)
Q Consensus 794 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~ 872 (1012)
.. ..+ ..+.+ |...|.+++|+||++++++++ |+.|++|+. +++.+..+.+|.
T Consensus 374 ~~-----------------------~~~-~~~~~--~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~ 426 (577)
T 2ymu_A 374 NG-----------------------QLL-QTLTG--HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS 426 (577)
T ss_dssp TC-----------------------CEE-EEEEC--CSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCS
T ss_pred CC-----------------------CEE-EEECC--CCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEECCCC
T ss_conf 99-----------------------789-98527--8897489999899999999949998999969-997898962889
Q ss_pred CCEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCC
Q ss_conf 98269999259994999995899199998207867677505688858999928999899993899499975899773341
Q 001790 873 PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKS 952 (1012)
Q Consensus 873 ~~i~~l~~sp~~~~~las~~~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~ 952 (1012)
..|++++|+| ++++|++++.|+.|++|+. +++.+..+.+|...|++++|+||+++|++++.|+.|++|+.. ++.
T Consensus 427 ~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~~~--- 500 (577)
T 2ymu_A 427 SSVWGVAFSP-DDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQL--- 500 (577)
T ss_dssp SCEEEEEECT-TSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-SCE---
T ss_pred CCEEEEEECC-CCCEEEEECCCCEEEEEEC-CCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEECCC-CCE---
T ss_conf 9757999989-9999999939998999979-998899972789977899996999999999198979999399-978---
Q ss_pred EEEECCCCCCCCCCEEEEECCCCCEEEEE-ECCEEEEEECCCCEEEEEECC--CCEEEEEECC
Q ss_conf 79841799999980179985799899999-297299999999639786269--8756887349
Q 001790 953 VTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKMERIRQVGS--PHICSIIFCN 1012 (1012)
Q Consensus 953 ~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~--~~i~~~~f~p 1012 (1012)
+....+|. ..|++++|+||+++|+++ .|+.|++||. +++.+..+.+ +.|.+++|+|
T Consensus 501 --~~~~~~h~-~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~ 559 (577)
T 2ymu_A 501 --LQTLTGHS-SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP 559 (577)
T ss_dssp --EEEEECCS-SCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECT
T ss_pred --EEEEECCC-CCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEECCCCCCEEEEEECC
T ss_conf --99986799-99899999189999999989699999969-9978989718888878999968
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=521.67 Aligned_cols=544 Identities=14% Similarity=0.196 Sum_probs=448.9
Q ss_pred CCCCCCCCCCCEEEEC-CCCCEEEEEEECCCCCEEEEECCCCEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 3568898965059630-799468999736899189994177709999836885110345310135546865210011479
Q 001790 327 TWSLDDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405 (1012)
Q Consensus 327 ~~~~~~~~~~~~~~~~-h~~~V~~~~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 405 (1012)
+|+... ......+. |.+.|++++|+|+|+ ++++|+.||.|++||+.+++.+.. +.+|
T Consensus 641 vw~~~~--~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~~~~~~~~~-------------------~~~~ 698 (1249)
T 3sfz_A 641 VFKAET--GEKLLDIKAHEDEVLCCAFSSDDS-YIATCSADKKVKIWDSATGKLVHT-------------------YDEH 698 (1249)
T ss_dssp EEETTT--CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEE-------------------EECC
T ss_pred EEECCC--CCEEEEECCCCCCEEEEEEECCCC-EEEEEECCCEEEEEECCCCCEEEE-------------------ECCC
T ss_conf 999899--978887606777789999926999-899981899599987799936899-------------------9589
Q ss_pred CCCEEEEEECC--CCCEEEEEECCCEEEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEE-C
Q ss_conf 96668999965--99989999779919999602898530002442354676799982799923999974999399996-7
Q 001790 406 PISVSRVAWSP--DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (1012)
Q Consensus 406 ~~~V~~i~~sp--dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd-~ 482 (1012)
...|.+++|+| ++.++++|+.|+.|++||+.+++... .+.+|...|++++|+|+++ ++++++.||.|++|| .
T Consensus 699 ~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~---~~~~h~~~v~~~~~sp~~~--~l~s~s~dg~v~vwd~~ 773 (1249)
T 3sfz_A 699 SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN---TMFGHTNSVNHCRFSPDDE--LLASCSADGTLRLWDVR 773 (1249)
T ss_dssp SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEE---EECCCSSCEEEEEECSSTT--EEEEEESSSEEEEEEGG
T ss_pred CCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCHHH---EECCCCCCEEEEEEECCCC--EEEEEECCCEEEEEECC
T ss_conf 973799998408996599998089709999899963422---0127779788999925999--89999789859999688
Q ss_pred CCCCEEEECC-------------CCCCEEEEECCCCCCCEEEEEEECCCEEEEEECCCCCCEEEEC-CCCCCEEEEEECC
Q ss_conf 8960342048-------------8448899830026894299999418929999748897224306-9998189999926
Q 001790 483 SGRKLFNFEG-------------HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-APGHWCTTMLYSA 548 (1012)
Q Consensus 483 ~~~~~~~~~~-------------h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~s~ 548 (1012)
++.....+.. ....+.+++|++ ++..+++++ ++.+.+|++.++....... .+...+.+++|+|
T Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp 850 (1249)
T 3sfz_A 774 SANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA--DGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP 850 (1249)
T ss_dssp GTEEEEEEECCCCC--------CCCCCBCCCCBCT--TSSEEEEEE-TTEEEEEETTTCCEEEEEECSSSSCCCEEEECS
T ss_pred CCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECC--CCCEEEEEC-CCCEEEEEECCCCCEEEECCCCCCCEEEEEECC
T ss_conf 88655302023210246776445650179999978--998899975-895999995689723577478777607999827
Q ss_pred CCCEEEEEEECCCCCCCEEEEECCCCEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEECCCCEE---------
Q ss_conf 99969995315799970999807988134453077788500999816999999995899299995799815---------
Q 001790 549 DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI--------- 619 (1012)
Q Consensus 549 ~~~~l~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--------- 619 (1012)
++..+++++ .++.+++|+..++.....+.+|.. .+.+++|+|++..+++++.||.+++|+......
T Consensus 851 ~~~~l~~~~----~dg~v~vwd~~~~~~~~~~~~h~~-~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~ 925 (1249)
T 3sfz_A 851 YDHLAVIAL----SQYCVELWNIDSRLKVADCRGHLS-WVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQE 925 (1249)
T ss_dssp STTEEEEEC----SSSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEE
T ss_pred CCCEEEEEE----CCCEEEEEECCCCCEEEECCCCCC-CEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCE
T ss_conf 888899994----798699998678956532278766-568999989999899995897289887466520102113310
Q ss_pred --------------------EEEEECC------CCCCCCCEEEEECCCCEEEEEECCCCEEEEECCCCCEEEECCCCCCC
Q ss_conf --------------------8997169------99999663686169999999978993999993678423200138862
Q 001790 620 --------------------LTSTDAE------GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPF 673 (1012)
Q Consensus 620 --------------------~~~~~~~------~~~~~v~~i~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 673 (1012)
....... .....+.+++|+|++.++++++.+|.+++|+..++. ......
T Consensus 926 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~-~~~~~~---- 1000 (1249)
T 3sfz_A 926 IDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR-VFSSGV---- 1000 (1249)
T ss_dssp EEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTS-CEEECC----
T ss_pred EEEEECCCCCEEEEECCCCCEEEEECCCCEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCC-EEEECC----
T ss_conf 368975998689981377624898447650897256727899995899779998699988999757872-344303----
Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEE
Q ss_conf 11247640022023644423468988852123699988753358998888889873236656889874002785067447
Q 001790 674 EALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCR 753 (1012)
Q Consensus 674 ~~~~~~i~~i~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~ 753 (1012)
.+...+.+++|+|+|+.+ ++++.|+.+++|++.... .
T Consensus 1001 -~h~~~v~~l~~s~dg~~l-------------------------------------~s~~~dg~i~vwd~~~~~----~- 1037 (1249)
T 3sfz_A 1001 -GHKKAVRHIQFTADGKTL-------------------------------------ISSSEDSVIQVWNWQTGD----Y- 1037 (1249)
T ss_dssp -CCSSCCCCEEECSSSSCE-------------------------------------EEECSSSBEEEEETTTTE----E-
T ss_pred -CCCCCEEEEEECCCCCEE-------------------------------------EEECCCCEEEEEECCCCC----E-
T ss_conf -677716899998999989-------------------------------------998699879999879996----6-
Q ss_pred EEECCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCC
Q ss_conf 99608988887755999983386359983025705764414565699988212233323115888513320248789987
Q 001790 754 LVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEA 833 (1012)
Q Consensus 754 ~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (1012)
.... .|...+.++.+++++. +++++.||.+++|++.++.. .. .+.+ |...
T Consensus 1038 -~~~~---~~~~~v~~~~~~~~~~-l~~~~~dg~v~vwd~~~~~~----------------------~~-~~~~--~~~~ 1087 (1249)
T 3sfz_A 1038 -VFLQ---AHQETVKDFRLLQDSR-LLSWSFDGTVKVWNVITGRI----------------------ER-DFTC--HQGT 1087 (1249)
T ss_dssp -ECCB---CCSSCEEEEEECSSSE-EEEEESSSEEEEEETTTTCC----------------------CE-EEEC--CSSC
T ss_pred -EEEE---CCCCCEEEEEECCCCC-EEEEECCCCEEEEECCCCCE----------------------EE-EECC--CCCC
T ss_conf -8985---2787389999908995-89997889689988898865----------------------58-8746--6884
Q ss_pred EEEEEEEECCCEEEEEC-CCCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEE-
Q ss_conf 74999932898999980-9929999968881999971799982699992599949999958991999982078676775-
Q 001790 834 VPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL- 911 (1012)
Q Consensus 834 v~~i~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~las~~~dg~I~iwd~~~~~~~~~~- 911 (1012)
|.+++|+||++++++++ |+.|++||+.+++....+.+|...|++++|+| ++++|++++.||.|++||+.+++.+..+
T Consensus 1088 v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~-dg~~lat~~~dg~i~vwd~~~~~~~~~~~ 1166 (1249)
T 3sfz_A 1088 VLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSL-DGILLATGDDNGEIRIWNVSDGQLLHSCA 1166 (1249)
T ss_dssp CCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECS-SSSEEEEEETTSCCCEEESSSSCCCCCCC
T ss_pred EEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCEEEEEECC-CCCEEEEEECCCEEEEEECCCCCEEEEEC
T ss_conf 89999989999899984999489987898500125506877679999979-99989998289979999889994578851
Q ss_pred --------CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCEEEECCCCCCCCCCEEEEECCCCCEEEEE-E
Q ss_conf --------0568885899992899989999389949997589977334179841799999980179985799899999-2
Q 001790 912 --------KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-H 982 (1012)
Q Consensus 912 --------~~h~~~V~~i~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~ 982 (1012)
.+|.+.|++++|+||++++++++ |.|++||+.+++.... ..++. ..|.+++|+||+++++++ .
T Consensus 1167 ~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~-----~~~~~-~~i~~~~~s~dg~~l~~~~~ 1238 (1249)
T 3sfz_A 1167 PISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQT-----FYTNG-TNLKKIHVSPDFRTYVTVDN 1238 (1249)
T ss_dssp CCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCC-----CCCSS-CCCCCCEECSSSCCEEEECT
T ss_pred CCCCCCCCCCCCCEEEEEEECCCCCEEEECC--CEEEEEECCCCCEEEE-----EECCC-CCCCEEEECCCCCEEEEECC
T ss_conf 4444421025674289999978999899779--8599989888950046-----40047-75327999789877999668
Q ss_pred CCEEEEEECC
Q ss_conf 9729999999
Q 001790 983 ETQLAIYDAS 992 (1012)
Q Consensus 983 d~~i~vwd~~ 992 (1012)
+|.+++|++.
T Consensus 1239 dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1239 LGILYILQVL 1248 (1249)
T ss_dssp TCCEEEECCC
T ss_pred CCEEEEEEEC
T ss_conf 8179997643
No 6
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=513.67 Aligned_cols=554 Identities=16% Similarity=0.230 Sum_probs=443.3
Q ss_pred CCCCEEEEEEECCCCCEEEEECCCCEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEE
Q ss_conf 79946899973689918999417770999983688511034531013554686521001147996668999965999899
Q 001790 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1012)
Q Consensus 343 h~~~V~~~~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~la 422 (1012)
+.+.+.+++|+|||+ ++++++ ++.|++|++.+++... .+.+|...|++++|||||++||
T Consensus 17 ~~g~~~~~~~spdg~-~l~~~~-~~~v~l~~~~~~~~~~-------------------~~~~h~~~v~~~~~spdg~~la 75 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGD-KIQYCN-GTSVYTVPVGSLTDTE-------------------IYTEHSHQTTVAKTSPSGYYCA 75 (611)
T ss_dssp CTTCCCCCEECTTSS-EEEEEE-TTEEEEEETTCSSCCE-------------------EECCCSSCEEEEEECTTSSEEE
T ss_pred CCCCEEEEEECCCCC-EEEECC-CCEEEEECCCCCCCCE-------------------EECCCCCCEEEEEECCCCCEEE
T ss_conf 068236976679999-799679-9979994578724273-------------------7658998659999999996899
Q ss_pred EEECCCEEEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCC----CCEEEEECCCCCEEEECCCCCCEE
Q ss_conf 9977991999960289853000244235467679998279992399997499----939999678960342048844889
Q 001790 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----KLIKVWELSGRKLFNFEGHEAPVY 498 (1012)
Q Consensus 423 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~h~~~v~ 498 (1012)
+|+.|++|+|||+.+++... ...+.+|.+.|.+++|+|+++ .+++++.+ +.|++|| .+.....+.+|...|.
T Consensus 76 sg~~d~~v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd-~~~~~~~l~gh~~~v~ 151 (611)
T 1nr0_A 76 SGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD-TGTSNGNLTGQARAMN 151 (611)
T ss_dssp EEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT-TCCBCBCCCCCSSCEE
T ss_pred EEECCCCEEEEECCCCCCEE-EEEECCCCCCEEEEEECCCCC--EEEEEECCCCCEEEEEEEE-CCCCCCEECCCCCCCE
T ss_conf 99489978994898984156-676225578448999899999--7999989977366999963-8997632547889836
Q ss_pred EEECCCCCCCEEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCCEEEEECCCCEEEE
Q ss_conf 98300268942999994189299997488972243069998189999926999699953157999709998079881344
Q 001790 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1012)
Q Consensus 499 ~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~~~~~~ 578 (1012)
+++|+|+.. ..+++++.|++|++||.........+..|...|.+++|+|+++++++++ .|+.|++||..+++...
T Consensus 152 ~v~f~p~~~-~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s----~D~~i~lwd~~~g~~~~ 226 (611)
T 1nr0_A 152 SVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG----GDGTIVLYNGVDGTKTG 226 (611)
T ss_dssp EEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTTCCEEE
T ss_pred EEEECCCCC-EEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEE----CCCCEEEEECCCCCEEE
T ss_conf 999889998-2999992898099997999757665200257169999979999899998----99919998899982866
Q ss_pred EEC-------CCCCCCCEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEECCCC-CCCCCEEEEECCCCEEEEEECC
Q ss_conf 530-------77788500999816999999995899299995799815899716999-9996636861699999999789
Q 001790 579 TYA-------GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG-LPNLPRLRFSKEGNLLAVTTAD 650 (1012)
Q Consensus 579 ~~~-------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~i~~s~~g~~l~~~~~d 650 (1012)
.+. +|.. .+.+++|+|++.++++++.|+.|++||+.+++.+..+..... ......+.| ++..+++++.|
T Consensus 227 ~~~~~~~~~~~h~~-~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d 303 (611)
T 1nr0_A 227 VFEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISAN 303 (611)
T ss_dssp ECBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETT
T ss_pred EECCCCCCCCCCCC-CEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEE--CCCEEEEEECC
T ss_conf 51366432356678-7899999799999999908980999968887013440478876640689997--38879999589
Q ss_pred CCEEEEECCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 93999993678423200138862112476400220236444234689888521236999887533589988888898732
Q 001790 651 NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRT 730 (1012)
Q Consensus 651 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 730 (1012)
+.+++|+...+. ....+.+ +...+.+++|+|+|+.+ +
T Consensus 304 ~~i~~~~~~~~~-~~~~~~g-----h~~~v~~l~~spdg~~l-------------------------------------~ 340 (611)
T 1nr0_A 304 GFINFVNPELGS-IDQVRYG-----HNKAITALSSSADGKTL-------------------------------------F 340 (611)
T ss_dssp CCEEEEETTTTE-EEEEECC-----CSSCEEEEEECTTSSEE-------------------------------------E
T ss_pred CCEEEEECCCCC-CCEEECC-----CCCCEEEEEEECCCCEE-------------------------------------E
T ss_conf 968999688997-4469837-----88888999991899989-------------------------------------9
Q ss_pred CCCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 36656889874002785067447996089888877559999833863599830257057644145656999882122333
Q 001790 731 VDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVP 810 (1012)
Q Consensus 731 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~g~~~~~~~~ 810 (1012)
+++.|+.|++|++... ..... . ..+|...+.+++|++++ .+++++.|+.+++|+..........
T Consensus 341 s~s~D~~v~~Wd~~~~----~~~~~-~--~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~-------- 404 (611)
T 1nr0_A 341 SADAEGHINSWDISTG----ISNRV-F--PDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSK-------- 404 (611)
T ss_dssp EEETTSCEEEEETTTC----CEEEC-S--SCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTTS--------
T ss_pred EEECCCCEEEEECCCC----CEEEE-C--CCCCCCEEEEEEECCCC-CEEEEECCCCEEEEECCCCCCCCCC--------
T ss_conf 9958984999978879----25632-1--66776507899987899-6999984896689546885435652--------
Q ss_pred EEECCCCCCEEEECCCCCCCCCCEEEEEEEECCCEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEE
Q ss_conf 23115888513320248789987749999328989999809929999968881999971799982699992599949999
Q 001790 811 QHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 890 (1012)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~las 890 (1012)
..... ......+++++++|+.++++.++.+++|+ .++ +..+. +...+.+++|+| |+++||+
T Consensus 405 ---------~~~~~-----~~~~~~~~~~s~dg~~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~las 465 (611)
T 1nr0_A 405 ---------AVANK-----LSSQPLGLAVSADGDIAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAV 465 (611)
T ss_dssp ---------CCEEE-----CSSCEEEEEECTTSSCEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEE
T ss_pred ---------EEEEE-----CCCCCCEEEEECCCCEEEEEECCEEEEEE--CCC-EEEEE-CCCCCEEEEEEC-CCCEEEE
T ss_conf ---------12001-----48997079980799699999676399984--894-34640-688954999928-9989999
Q ss_pred EECCCEEEEEECCCCEE--EEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC-CCCCCCEEEECCCCCCCCCCE
Q ss_conf 95899199998207867--677505688858999928999899993899499975899-773341798417999999801
Q 001790 891 GTEDSTIHIYNVRVDEV--KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT-WEKRKSVTIHIPAGKTPTGDT 967 (1012)
Q Consensus 891 ~~~dg~I~iwd~~~~~~--~~~~~~h~~~V~~i~~spdg~~l~s~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~v~ 967 (1012)
|+.|++|++|++.++.. +.. .+|...|++++|+|||++|++++.|++|++|++.+ ++.... ....+|. ..|.
T Consensus 466 gs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~---~~~~~H~-~~V~ 540 (611)
T 1nr0_A 466 GGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT---NSWTFHT-AKVA 540 (611)
T ss_dssp EETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC---CCCCCCS-SCEE
T ss_pred ECCCCEEEEEECCCCCEEEEEC-CCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCEEEE---EEEEECC-CCEE
T ss_conf 6899739999945992224101-577886079999899998999948998999885778722321---0264046-6425
Q ss_pred EEEECCCCCEEEEE-ECCEEEEEECCCCE-EE-EEEC---CCCEEEEEECC
Q ss_conf 79985799899999-29729999999963-97-8626---98756887349
Q 001790 968 RVQFNADQVRMLVV-HETQLAIYDASKME-RI-RQVG---SPHICSIIFCN 1012 (1012)
Q Consensus 968 ~l~fs~dg~~l~~~-~d~~i~vwd~~~~~-~~-~~~~---~~~i~~~~f~p 1012 (1012)
+++|+|||++|+++ .|+.|++|+++++. .+ ..+. .+.|.+++|+|
T Consensus 541 ~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~ 591 (611)
T 1nr0_A 541 CVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN 591 (611)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEE
T ss_pred EEEECCCCCEEEEEECCCCEEEEECCCCCCCCCHHHCCCCCCCEEEEEECC
T ss_conf 899899899799997997299997887555632644467656711899858
No 7
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=495.72 Aligned_cols=547 Identities=13% Similarity=0.230 Sum_probs=438.3
Q ss_pred CCCCCEEEEEEECCCCCEEEEECCCCEEEEEECCCC----CEECCCCCCCCCCCCCCCCCCCEECCCCCCC-EEEEEECC
Q ss_conf 079946899973689918999417770999983688----5110345310135546865210011479966-68999965
Q 001790 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR----DRLVSKPFKIWDMAACSLPFQASIFKDVPIS-VSRVAWSP 416 (1012)
Q Consensus 342 ~h~~~V~~~~fspdg~~llasg~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~i~~sp 416 (1012)
.|.+.|++++|+|||+ ++++++ ++.|.+|++.++ +... .+.+|... |.+++|+|
T Consensus 16 ~~~~~v~~~~~spdg~-~l~~~~-~~~v~v~~~~~~~~~~~~~~-------------------~~~~h~~~~v~~~~~sp 74 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTN-AIAYPC-GKSAFVRCLDDGDSKVPPVV-------------------QFTGHGSSVVTTVKFSP 74 (615)
T ss_dssp CCTTCCCCCEEETTTT-EEEEEE-TTEEEEEECCSSCCSSCSEE-------------------EECTTTTSCEEEEEECS
T ss_pred CCCCCEEEEEECCCCC-EEEEEC-CCEEEEEECCCCCCCCCCCE-------------------EEECCCCCEEEEEEECC
T ss_conf 7658536899889999-799935-98499997778877651431-------------------88057884499999796
Q ss_pred --CCCEEEEEECCCEEEEEEECCCC-----CCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCC----CCEEEEECCCC
Q ss_conf --99989999779919999602898-----53000244235467679998279992399997499----93999967896
Q 001790 417 --DGNYVGVAFTKHLIQLYSYAGSN-----DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----KLIKVWELSGR 485 (1012)
Q Consensus 417 --dg~~las~~~d~~i~iwd~~~~~-----~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~~~d----~~i~iwd~~~~ 485 (1012)
++++|++++.|+.|++|++.++. .......+..|...|.+++|+|+++ ++++++.+ +.|.+|| .++
T Consensus 75 ~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d-~~~ 151 (615)
T 1pgu_A 75 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD-SGN 151 (615)
T ss_dssp STTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT-TCC
T ss_pred CCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCHHHCCCCCEEEEEEECCCC--EEEEECCCCCCCCEEEEEE-CCC
T ss_conf 7899889996489879997688876554455420001112566379999907999--8999316877755799997-898
Q ss_pred CEEEECCCCCCEEEEECCCCCCCEEEEEEECCCEEEEEECCCCCCEEEECCCCC---CEEEEEECCC-CCEEEEEEECCC
Q ss_conf 034204884488998300268942999994189299997488972243069998---1899999269-996999531579
Q 001790 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH---WCTTMLYSAD-GSRLFSCGTSKD 561 (1012)
Q Consensus 486 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~i~~s~~-~~~l~~~~~~~~ 561 (1012)
.+..+.+|...|.+++|++++. ..+++++.|+.|++||+........+..+.. .+.+++|+|+ ++++++++
T Consensus 152 ~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---- 226 (615)
T 1pgu_A 152 SLGEVSGHSQRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG---- 226 (615)
T ss_dssp EEEECCSCSSCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE----
T ss_pred CCEEEECCCCCEEEEEECCCCC-CEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCCCEEEEEE----
T ss_conf 1031306774388999887899-68999957995999969996101320256777742899997897788899986----
Q ss_pred CCCCEEEEECCCCEEEEEE-C---CCCCCCCEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEECCC--CCCCCCEE
Q ss_conf 9970999807988134453-0---7778850099981699999999589929999579981589971699--99996636
Q 001790 562 GDSFLVEWNESEGTIKRTY-A---GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG--GLPNLPRL 635 (1012)
Q Consensus 562 ~d~~i~iwd~~~~~~~~~~-~---~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~v~~i 635 (1012)
.++.|++||+.+++.+..+ . .|.. .+..++|+ ++.++++++.|+.|++||+.+++.+..+..+. ....+.++
T Consensus 227 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 304 (615)
T 1pgu_A 227 SDRKISCFDGKSGEFLKYIEDDQEPVQG-GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV 304 (615)
T ss_dssp TTCCEEEEETTTCCEEEECCBTTBCCCS-CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEE
T ss_pred CCCEEEEEECCCCCEEEEECCCCCCCCC-CEEEEEEC-CCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCEEEE
T ss_conf 8980899989999785895254445677-55899981-899799984899489997888927878847877545714699
Q ss_pred EEECCCCEEEEEECCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 86169999999978993999993678423200138862112476400220236444234689888521236999887533
Q 001790 636 RFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPII 715 (1012)
Q Consensus 636 ~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 715 (1012)
.|+ ++..+++++.++.+++|++.++ .....+.+ +..++.+++| |+ +
T Consensus 305 ~~~-~~~~l~~~~~~g~i~~~d~~~~-~~~~~~~~-----~~~~v~~~~~-~~---l----------------------- 350 (615)
T 1pgu_A 305 VAT-GNGRIISLSLDGTLNFYELGHD-EVLKTISG-----HNKGITALTV-NP---L----------------------- 350 (615)
T ss_dssp EEE-ETTEEEEEETTSCEEEEETTEE-EEEEEECC-----CSSCEEEEET-TT---T-----------------------
T ss_pred EEC-CCCEEEEEECCCCEEEEECCCC-CEEEEEEC-----CCCCEEEEEE-CC---C-----------------------
T ss_conf 918-9976999978997899988899-28899947-----7787899995-67---4-----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCC
Q ss_conf 58998888889873236656889874002785067447996089888877559999833863599830257057644145
Q 001790 716 NGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHR 795 (1012)
Q Consensus 716 ~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~ 795 (1012)
++++.|+.+++|++. .+. .. |...|.+++| +++..+++++.||.+++|++..
T Consensus 351 --------------~~~~~dg~i~~w~~~---------~~~-~~---~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~ 402 (615)
T 1pgu_A 351 --------------ISGSYDGRIMEWSSS---------SMH-QD---HSNLIVSLDN-SKAQEYSSISWDDTLKVNGITK 402 (615)
T ss_dssp --------------EEEETTSCEEETTTT---------EEE-CC---CCSCEEEEEC-CSTTCCEEEETTTEEEETTEEE
T ss_pred --------------EEECCCCEEEEEECH---------HHC-CC---CCCCEEEEEE-CCCCEEEEEECCCCEEEEECCC
T ss_conf --------------898799959998752---------415-75---5685179997-8986799995899799988666
Q ss_pred CCC---------CCCCCCC---CCCCCEEECCCCCCEEEECCCCCCCCCCEEEEEEEECCCEEEEEC--CCCEEEEECCC
Q ss_conf 656---------9998821---223332311588851332024878998774999932898999980--99299999688
Q 001790 796 NEQ---------NPSGKAT---ASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMT 861 (1012)
Q Consensus 796 ~~~---------~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~la~~s--dg~i~iwd~~~ 861 (1012)
... .+++... ....+.+|+..++..+...- +...+.+++|+ ++++++++ ++.|++|++.+
T Consensus 403 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~ 476 (615)
T 1pgu_A 403 HEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR----LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSD 476 (615)
T ss_dssp EECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE----CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTE
T ss_pred CCCCCCCEEEEECCCCCEEEEECCCCEEEEECCCCCEEEECC----CCCCCEEEEEC--CCEEEEEECCCCEEEEEECCC
T ss_conf 763678469998289878999679826999446786655515----67872077883--888999656898699998888
Q ss_pred CEEE-EEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECC-CCCCEEEEEECC----------CCCE
Q ss_conf 8199-997179998269999259994999995899199998207867677505-688858999928----------9998
Q 001790 862 FKVM-TTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKG-HQKRITGLAFST----------SLNI 929 (1012)
Q Consensus 862 ~~~~-~~~~~~~~~i~~l~~sp~~~~~las~~~dg~I~iwd~~~~~~~~~~~~-h~~~V~~i~~sp----------dg~~ 929 (1012)
++.. ..+.+|...|++++|+| ++++|++++.||.|++|++.+++.+..+.+ |...|++++|+| ++++
T Consensus 477 ~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~ 555 (615)
T 1pgu_A 477 LEVSFDLKTPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDL 555 (615)
T ss_dssp EEEEEECSSCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCE
T ss_pred CCCCCCCCCCCCCCEEEEEECC-CCCEEEECCCCCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCE
T ss_conf 5435333677657507999989-999899817998599865777762467604788714699976832345332468888
Q ss_pred EEEEECCCCEEEEECCCCCCCCCEEEECCCCCCCCCCEEEEECCCCCEEEEE-ECCEEEEEECCCC
Q ss_conf 9999389949997589977334179841799999980179985799899999-2972999999996
Q 001790 930 LVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKM 994 (1012)
Q Consensus 930 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~vwd~~~~ 994 (1012)
|++++.|+.|++|++.++.. .+....+|. ..|.+++|+||++ |+++ .|+.|++|+++.+
T Consensus 556 l~~~~~dg~i~iw~~~~~~~----~~~~~~~h~-~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~~ 615 (615)
T 1pgu_A 556 VATGSLDTNIFIYSVKRPMK----IIKALNAHK-DGVNNLLWETPST-LVSSGADACIKRWNVVLE 615 (615)
T ss_dssp EEEEETTSCEEEEESSCTTC----CEEETTSST-TCEEEEEEEETTE-EEEEETTSCEEEEEEC--
T ss_pred EEEECCCCCEEEEECCCCCE----ECHHHHCCC-CCEEEEEECCCCC-EEEECCCCEEEEEEEECC
T ss_conf 99981797199997788854----031133594-3058999738997-288459963999960159
No 8
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=488.38 Aligned_cols=616 Identities=11% Similarity=0.085 Sum_probs=438.2
Q ss_pred CCCEEEECCCCCEEEEEEECCCCCEEEEECCCCEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEE
Q ss_conf 65059630799468999736899189994177709999836885110345310135546865210011479966689999
Q 001790 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1012)
Q Consensus 335 ~~~~~~~~h~~~V~~~~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~ 414 (1012)
......++|.+.|+|++|+|+++ +||+|+.||.|+||+....+... ...|...|.+++|
T Consensus 8 ~~~~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~f 66 (902)
T 2oaj_A 8 LAETNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRF 66 (902)
T ss_dssp EEEEEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEE
T ss_pred ECCCCCCCCCCCCEEEEECCCCC-EEEEEECCCEEEEEECCCCEEEE--------------------ECCCCCCEEEEEE
T ss_conf 21202168899848999979999-89999297989999689947999--------------------8689997799999
Q ss_pred CCCCCEEEEEECCCEEEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEE-CCCCCE------
Q ss_conf 6599989999779919999602898530002442354676799982799923999974999399996-789603------
Q 001790 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL------ 487 (1012)
Q Consensus 415 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd-~~~~~~------ 487 (1012)
+| |++|++++.|++|++||+.+++.+. .+. |...|++++|+|+++ ++++|+.||.|++|| .++...
T Consensus 67 sp-g~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~ 139 (902)
T 2oaj_A 67 VK-GIYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDN 139 (902)
T ss_dssp ET-TTEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECC
T ss_pred CC-CCEEEEEECCCEEEEEECCCCCEEE---EEC-CCCCEEEEEECCCCC--EEEEECCCCCEEEEECCCCCCCCCEECC
T ss_conf 08-9889999895959999899996899---974-899879999879999--8999949992999999999626503043
Q ss_pred -----EEECCCCCCEEEEECCCCCCCEEEEEEECCCEEEEEECCCCCCEEEECCC------------------CCCEEEE
Q ss_conf -----42048844889983002689429999941892999974889722430699------------------9818999
Q 001790 488 -----FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP------------------GHWCTTM 544 (1012)
Q Consensus 488 -----~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------~~~v~~i 544 (1012)
..+.+|.+.|.+++|+|. ++..+++++.||.| +||++.......+..+ ...|.++
T Consensus 140 ~~~~~~~~~~h~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v 217 (902)
T 2oaj_A 140 LQKSSFFPAARLSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQS 217 (902)
T ss_dssp HHHHHTCSSSCCCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEE
T ss_pred CCCCCCCCCCCCCCEEEEEECCC-CCCEEEEEECCCCE-EEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 21000254457897389997669-99989999189849-99877896579983355776777654433234567776899
Q ss_pred EECCCCCEEEEEEECCCCCCCEEEEECCCCEEEEE--EC---CC------------CCCCCEEEEEEC----CC-CEEEE
Q ss_conf 99269996999531579997099980798813445--30---77------------788500999816----99-99999
Q 001790 545 LYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT--YA---GF------------RKKSNGVVQFDT----TQ-NHFLA 602 (1012)
Q Consensus 545 ~~s~~~~~l~~~~~~~~~d~~i~iwd~~~~~~~~~--~~---~~------------~~~~i~~~~~s~----~~-~~l~~ 602 (1012)
+|+|+|.++++++ .|+.|++||+++++.+.. +. .| +...+..++|++ ++ ..+++
T Consensus 218 ~fspdg~~lasgs----~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~s 293 (902)
T 2oaj_A 218 LYHPNSLHIITIH----EDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLIS 293 (902)
T ss_dssp EECTTSSEEEEEE----TTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEE
T ss_pred EECCCCCEEEEEE----CCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEE
T ss_conf 9859999999998----999399998789968888850123457877767888855567745799973499988789996
Q ss_pred EECC-----CCEEEEECC------------------CCEEEEEEECCCCCCCCCEEEEEC----------CCCEEEEEEC
Q ss_conf 9589-----929999579------------------981589971699999966368616----------9999999978
Q 001790 603 VGED-----SQIKFWDMD------------------NVNILTSTDAEGGLPNLPRLRFSK----------EGNLLAVTTA 649 (1012)
Q Consensus 603 ~~~d-----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~i~~s~----------~g~~l~~~~~ 649 (1012)
++.+ ..+.+|++. ..+....+.. .+...+..+.+.+ ++..+++++.
T Consensus 294 g~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~ 372 (902)
T 2oaj_A 294 HKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPL-PTNVPIVNILPIPRQSPYFAGCHNPGLILLILG 372 (902)
T ss_dssp EECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECC-SSSSCEEEEEECCSSCSHHHHTBSCSEEEEEET
T ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEEC-CCCCCEEEEEECCCCCCCCCCCCCCEEEEEECC
T ss_conf 8877778885289995478987555425565466417452278741-899954799997788988677878506999917
Q ss_pred CCCEEEEECCCCCEEEECCCCC-CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCC
Q ss_conf 9939999936784232001388-62112476400220236444234689888521236999887533--58998888889
Q 001790 650 DNGFKILANAIGLRSLRAVENP-PFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPII--NGVDPTSRSMD 726 (1012)
Q Consensus 650 dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~i~~i~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 726 (1012)
|+.+++|++.++.........+ ....+...+.+++|++....+..+..... .........- ....+.+.+++
T Consensus 373 dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~-----~~~~~~l~G~~~~v~sv~~spdg 447 (902)
T 2oaj_A 373 NGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAA-----QNKDYLLKGGVRTKRQKLPAEYG 447 (902)
T ss_dssp TSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTT-----BCCCCSCCCSBCCCCCCCCCSEE
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHCC-----CCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9848999789998556555689852235897248999974999998888604-----69997545785778753336667
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECC-CEEEEECC--CCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCC--
Q ss_conf 873236656889874002785067-44799608--9888877559999833863599830257057644145656999--
Q 001790 727 KPRTVDDVTDKPKPWQLAEIVDSG-QCRLVTMP--ESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPS-- 801 (1012)
Q Consensus 727 ~~l~~~~~d~~i~iw~~~~~~~~~-~~~~~~~~--~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~-- 801 (1012)
..+++++.|++|++||+....... ......+. -..+|...|.+++|+|+++.|++++.||+|++|++...++...
T Consensus 448 ~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~ 527 (902)
T 2oaj_A 448 TAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVEN 527 (902)
T ss_dssp EEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC-----
T ss_pred CEEEEECCCCCEEEEECCCCCCCCCCEEEEECHHHCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCC
T ss_conf 58999658983899978776456773677501541377888764699963899969999458579999924865557545
Q ss_pred ----CC--C------CCCC--C-CEE-----ECCCCCCEEEECCCCCCCCCCEEEEEEEECCCEEEEEC-CCCEEEEECC
Q ss_conf ----88--2------1223--3-323-----11588851332024878998774999932898999980-9929999968
Q 001790 802 ----GK--A------TASA--V-PQH-----WLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMM 860 (1012)
Q Consensus 802 ----g~--~------~~~~--~-~~~-----~~~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~la~~s-dg~i~iwd~~ 860 (1012)
.. . .... . ..+ .....+......+.+ |...|++++||||| +||+++ |++|++||+.
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~--h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~ 604 (902)
T 2oaj_A 528 RPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHA--NKGKTSAINNSNIG-FVGIAYAAGSLMLIDRR 604 (902)
T ss_dssp ----------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECC--CSCSEEEEEECBTS-EEEEEETTSEEEEEETT
T ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC--CCCCEEEEEECCCC-EEEEEECCCCEEEEECC
T ss_conf 5778665113455134679654322423689887776014699986--88867799964876-89999589769999888
Q ss_pred CCEEEEE-----EC-CCCCCEEEEEEE-----CCCC---CEEEEEECCCEEEEEEC---CCCEEEEEECCCC-----CCE
Q ss_conf 8819999-----71-799982699992-----5999---49999958991999982---0786767750568-----885
Q 001790 861 TFKVMTT-----FM-SPPPASTFLAFH-----PQDN---NIIAIGTEDSTIHIYNV---RVDEVKSKLKGHQ-----KRI 918 (1012)
Q Consensus 861 ~~~~~~~-----~~-~~~~~i~~l~~s-----p~~~---~~las~~~dg~I~iwd~---~~~~~~~~~~~h~-----~~V 918 (1012)
+...+.. +. +|...|++++|+ | |+ ++|++|+.|++|++|++ .+|+...++.+|. ++|
T Consensus 605 ~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~-Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v 683 (902)
T 2oaj_A 605 GPAIIYMENIREISGAQSACVTCIEFVIMEYGD-DGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPI 683 (902)
T ss_dssp TTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTT-SSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCC
T ss_pred CCEEEEEEEHHHHCCCCCCCEEEEEEEEEECCC-CCCCCEEEEEEECCCCEEEEEEECCCCCCEEEEECCCEECCCCCCE
T ss_conf 983999702467264666613999999984178-9876338999956873999999558998689996672440788964
Q ss_pred EEEE-EC----------------------CCCCEEEEEECCCCEEEEECCCCCCCCCEEEECCCCCCCCCCEEE---E--
Q ss_conf 8999-92----------------------899989999389949997589977334179841799999980179---9--
Q 001790 919 TGLA-FS----------------------TSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRV---Q-- 970 (1012)
Q Consensus 919 ~~i~-~s----------------------pdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l---~-- 970 (1012)
..++ |+ +++.+|+++ +..|++|++.++++... ..++. ..+.++ .
T Consensus 684 ~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k-----~~~~~-~~~~~v~~~~~~ 755 (902)
T 2oaj_A 684 HKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHK-----GFKYP-LAATGLSYISTV 755 (902)
T ss_dssp CEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEE-----ECSSC-EEEEEEEEEEEE
T ss_pred EEEEEEECCCCCCCCCCHHHHHCCCCCCCCCEEEEEEE--CCCEEEEECCCCCCEEE-----ECCCC-EEEEEEEEEEEC
T ss_conf 79985866879736688789725577887773999993--54059996753351236-----72562-014477788701
Q ss_pred ----ECCCCCEEEEE-ECCEEEEEECCCCEEEEEECC
Q ss_conf ----85799899999-297299999999639786269
Q 001790 971 ----FNADQVRMLVV-HETQLAIYDASKMERIRQVGS 1002 (1012)
Q Consensus 971 ----fs~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~ 1002 (1012)
|++++..|++. .||.|++|++.+++++....-
T Consensus 756 ~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~ 792 (902)
T 2oaj_A 756 EKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHI 792 (902)
T ss_dssp CSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCCCCCCCCEEEEEEECCCCEEEEECCCHHHHHHCCC
T ss_conf 3555446736999992799599997856477841658
No 9
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=456.00 Aligned_cols=570 Identities=11% Similarity=0.076 Sum_probs=403.2
Q ss_pred CCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEEEEECCCCEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 35688989650596307994689997368991899941777099998368851103453101355468652100114799
Q 001790 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1012)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~~~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1012)
+|+... ......+.|...|++++|+| |+ +|++++.|++|+|||+.+++.+.. +. |.
T Consensus 43 lw~~~~--~~~~~~~~~~~~V~~l~fsp-g~-~L~S~s~D~~v~lWd~~~~~~~~~-------------------~~-~~ 98 (902)
T 2oaj_A 43 IYGQQQ--VEVVIKLEDRSAIKEMRFVK-GI-YLVVINAKDTVYVLSLYSQKVLTT-------------------VF-VP 98 (902)
T ss_dssp EECSTT--CEEEEECSSCCCEEEEEEET-TT-EEEEEETTCEEEEEETTTCSEEEE-------------------EE-CS
T ss_pred EEECCC--CEEEEECCCCCCEEEEEECC-CC-EEEEEECCCEEEEEECCCCCEEEE-------------------EC-CC
T ss_conf 996899--47999868999779999908-98-899998959599998999968999-------------------74-89
Q ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCEE-E-------EEEECCCCCEEEEEEECCCCCEEEEEECCCCCEE
Q ss_conf 6668999965999899997799199996028985300-0-------2442354676799982799923999974999399
Q 001790 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQ-H-------SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1012)
Q Consensus 407 ~~V~~i~~spdg~~las~~~d~~i~iwd~~~~~~~~~-~-------~~l~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~ 478 (1012)
..|++++|+|+++++++|+.||.|++||+.+++.... . ..+.+|.+.|++++|+|++.. .+++++.|+.|
T Consensus 99 ~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~-~l~~g~~dg~v- 176 (902)
T 2oaj_A 99 GKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIG-TVLISYEYVTL- 176 (902)
T ss_dssp SCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEE-EEEEECSSCEE-
T ss_pred CCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCEECCCCCCCCCCCCCCCCEEEEEECCCCCC-EEEEEECCCCE-
T ss_conf 9879999879999899994999299999999962650304321000254457897389997669999-89999189849-
Q ss_pred EEE-CCCCCEEEECCC------------------CCCEEEEECCCCCCCEEEEEEECCCEEEEEECCCCCCEEE--E---
Q ss_conf 996-789603420488------------------4488998300268942999994189299997488972243--0---
Q 001790 479 VWE-LSGRKLFNFEGH------------------EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD--Y--- 534 (1012)
Q Consensus 479 iwd-~~~~~~~~~~~h------------------~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~--- 534 (1012)
+|| .+++.+..+.+| ...|.+++|+| ++.+|++++.||.|++||+++++.... +
T Consensus 177 lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp--dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~ 254 (902)
T 2oaj_A 177 TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP--NSLHIITIHEDNSLVFWDANSGHMIMARTVFET 254 (902)
T ss_dssp EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT--TSSEEEEEETTCCEEEEETTTCCEEEEECSSCS
T ss_pred EEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECC--CCCEEEEEECCCEEEEEECCCCCEEEEEEECCC
T ss_conf 998778965799833557767776544332345677768999859--999999998999399998789968888850123
Q ss_pred CC-------------CCCCEEEEEECC----CC-CEEEEEEECCC-CCCCEEEEECC------------------CCEEE
Q ss_conf 69-------------998189999926----99-96999531579-99709998079------------------88134
Q 001790 535 DA-------------PGHWCTTMLYSA----DG-SRLFSCGTSKD-GDSFLVEWNES------------------EGTIK 577 (1012)
Q Consensus 535 ~~-------------~~~~v~~i~~s~----~~-~~l~~~~~~~~-~d~~i~iwd~~------------------~~~~~ 577 (1012)
.. +...|.+++|++ ++ ..+++++.+.+ ....+.+|+.. ..+..
T Consensus 255 ~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 334 (902)
T 2oaj_A 255 EINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQM 334 (902)
T ss_dssp CTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEE
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCE
T ss_conf 45787776788885556774579997349998878999688777788852899954789875554255654664174522
Q ss_pred EEECCCCCCCCEEEEEEC----------CCCEEEEEECCCCEEEEECCCCEEEEE-------------------E-----
Q ss_conf 453077788500999816----------999999995899299995799815899-------------------7-----
Q 001790 578 RTYAGFRKKSNGVVQFDT----------TQNHFLAVGEDSQIKFWDMDNVNILTS-------------------T----- 623 (1012)
Q Consensus 578 ~~~~~~~~~~i~~~~~s~----------~~~~l~~~~~dg~i~iwd~~~~~~~~~-------------------~----- 623 (1012)
..+.......+..+.+.+ +...+++++.||.|++|++.++..... +
T Consensus 335 ~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~ 414 (902)
T 2oaj_A 335 KIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPN 414 (902)
T ss_dssp EEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEH
T ss_pred EEEECCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCH
T ss_conf 78741899954799997788988677878506999917984899978999855655568985223589724899997499
Q ss_pred ---------------ECCCCCCCCCEEEEECCCCEEEEEECCCCEEEEECCCCCEEE-ECCCCC----CCCCCCCCCCEE
Q ss_conf ---------------169999996636861699999999789939999936784232-001388----621124764002
Q 001790 624 ---------------DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSL-RAVENP----PFEALRTPIESV 683 (1012)
Q Consensus 624 ---------------~~~~~~~~v~~i~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~----~~~~~~~~i~~i 683 (1012)
...++...+..++|+|+++++++++.|++|++||+.++.... ..+... ....+...|.++
T Consensus 415 ~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~sv 494 (902)
T 2oaj_A 415 KLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKI 494 (902)
T ss_dssp HHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEE
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECHHHCCCCCCCCEEEE
T ss_conf 99988886046999754578577875333666758999658983899978776456773677501541377888764699
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC-------------
Q ss_conf 2023644423468988852123699988753358998888889873236656889874002785067-------------
Q 001790 684 ALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSG------------- 750 (1012)
Q Consensus 684 ~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~------------- 750 (1012)
+|+|+|+.+ ++++.|++|++|++......+
T Consensus 495 afspdg~~L-------------------------------------Asgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~ 537 (902)
T 2oaj_A 495 SFAAETLEL-------------------------------------AVSIETGDVVLFKYEVNQFYSVENRPESGDLEMN 537 (902)
T ss_dssp EEETTTTEE-------------------------------------EEEETTSCEEEEEEEECCC---------------
T ss_pred EECCCCCEE-------------------------------------EEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEE
T ss_conf 963899969-------------------------------------9994585799999248655575455778665113
Q ss_pred ---------------------------CEEEEECCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCC
Q ss_conf ---------------------------44799608988887755999983386359983025705764414565699988
Q 001790 751 ---------------------------QCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGK 803 (1012)
Q Consensus 751 ---------------------------~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~g~ 803 (1012)
......+.. |.+.|++++|+|+| +|++++.|++|++||+.....
T Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~---h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~----- 608 (902)
T 2oaj_A 538 FRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHA---NKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAI----- 608 (902)
T ss_dssp CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECC---CSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEE-----
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC---CCCCEEEEEECCCC-EEEEEECCCCEEEEECCCCEE-----
T ss_conf 455134679654322423689887776014699986---88867799964876-899995897699998889839-----
Q ss_pred CCCCCCCEEECCCCCCEEEECCC-CCCCCCCEEEEEEE-----ECC---CEEEEEC-CCCEEEEEC---CCCEEEEEECC
Q ss_conf 21223332311588851332024-87899877499993-----289---8999980-992999996---88819999717
Q 001790 804 ATASAVPQHWLPSSGLLMANDVA-GVNLEEAVPCIALS-----KND---SYVMSAT-GGKISLFNM---MTFKVMTTFMS 870 (1012)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~s-----~dg---~~la~~s-dg~i~iwd~---~~~~~~~~~~~ 870 (1012)
++. +.+ ..+. + |...|++++|+ ||| ++|++++ |++|++|++ .+++...++.+
T Consensus 609 --------~~~---~~~--~~~~~g--h~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~ 673 (902)
T 2oaj_A 609 --------IYM---ENI--REISGA--QSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMD 673 (902)
T ss_dssp --------EEE---EEG--GGTCSS--CCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEE
T ss_pred --------EEE---EEH--HHHCCC--CCCCEEEEEEEEEECCCCCCCCEEEEEEECCCCEEEEEEECCCCCCEEEEECC
T ss_conf --------997---024--672646--66613999999984178987633899995687399999955899868999667
Q ss_pred C-----CCCEEEEE-EE----------------------CCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEE-
Q ss_conf 9-----99826999-92----------------------5999499999589919999820786767750568885899-
Q 001790 871 P-----PPASTFLA-FH----------------------PQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGL- 921 (1012)
Q Consensus 871 ~-----~~~i~~l~-~s----------------------p~~~~~las~~~dg~I~iwd~~~~~~~~~~~~h~~~V~~i- 921 (1012)
| .++|..++ |+ + ++.+|+++ +..|++|++.++++.++..+|...+..+
T Consensus 674 ~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~-~~~~l~~~--~~~ir~~~~~~~k~~~k~~~~~~~~~~v~ 750 (902)
T 2oaj_A 674 ITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCI-PGIVLITG--FDDIRLITLGKSKSTHKGFKYPLAATGLS 750 (902)
T ss_dssp EEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCC-CEEEEEEC--SSEEEEECTTCCCEEEEECSSCEEEEEEE
T ss_pred CEECCCCCCEEEEEEEECCCCCCCCCCHHHHHCCCCCCCC-CEEEEEEE--CCCEEEEECCCCCCEEEECCCCEEEEEEE
T ss_conf 2440788964799858668797366887897255778877-73999993--54059996753351236725620144777
Q ss_pred --E------ECCCCCEEEEEECCCCEEEEECCCCCCCCCEEEECCCCCCCCCCEEEEECCCCCEEEEEECC---EEEEEE
Q ss_conf --9------92899989999389949997589977334179841799999980179985799899999297---299999
Q 001790 922 --A------FSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHET---QLAIYD 990 (1012)
Q Consensus 922 --~------~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~---~i~vwd 990 (1012)
. |++++..|++++.||+|++|++.+.+++....+... .....+....|+.+|..+.-.+.. .+.+|.
T Consensus 751 ~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~~--~~~~~~~~~~~~~~G~~~~~~~~~e~~~~~~~~ 828 (902)
T 2oaj_A 751 YISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHIPFP--IAAKYITESSVLRNGDIAIRVSEFQASLFSTVK 828 (902)
T ss_dssp EEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEECSSC--CCHHHHTTCEECTTSCEEEECSSSEEEEEEEES
T ss_pred EEEECCCCCCCCCCEEEEEEECCCCEEEEECCCHHHHHHCCCCCC--CCCCCCCCEEECCCCCEEEEECHHHEEEEEEEC
T ss_conf 887013555446736999992799599997856477841658860--244643202896898899982702648999974
No 10
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=455.57 Aligned_cols=538 Identities=17% Similarity=0.214 Sum_probs=413.1
Q ss_pred CCCCCCC--CCCCEEEEC-CCCC-EEEEEEEC--CCCCEEEEECCCCEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCE
Q ss_conf 3568898--965059630-7994-68999736--8991899941777099998368851103453101355468652100
Q 001790 327 TWSLDDL--PRTVAVSLH-QGST-VISMDFHP--SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQAS 400 (1012)
Q Consensus 327 ~~~~~~~--~~~~~~~~~-h~~~-V~~~~fsp--dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1012)
+|+..+. +......+. |.+. |++++|+| +++ +|++|+.||.|++|++.+++...... .....
T Consensus 43 v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~-~l~s~~~dg~v~vw~~~~~~~~~~~~-----------~~~~~ 110 (615)
T 1pgu_A 43 VRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ-YLCSGDESGKVIVWGWTFDKESNSVE-----------VNVKS 110 (615)
T ss_dssp EEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCC-EEEEEETTSEEEEEEEEEEGGGTEEE-----------EEEEE
T ss_pred EEECCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCC-EEEEECCCCEEEEEECCCCCCCCCCC-----------CCCCC
T ss_conf 9977788776514318805788449999979678998-89996489879997688876554455-----------42000
Q ss_pred ECCCCCCCEEEEEECCCCCEEEEEECC----CEEEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCC
Q ss_conf 114799666899996599989999779----9199996028985300024423546767999827999239999749993
Q 001790 401 IFKDVPISVSRVAWSPDGNYVGVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (1012)
Q Consensus 401 ~~~~h~~~V~~i~~spdg~~las~~~d----~~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~~~d~~ 476 (1012)
.+.+|...|.+++|+|++++|++++.+ +.|.+|+ .++.+. .+.+|...|.+++|+|+++. .+++++.|+.
T Consensus 111 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~---~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~ 184 (615)
T 1pgu_A 111 EFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLG---EVSGHSQRINACHLKQSRPM-RSMTVGDDGS 184 (615)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEE---ECCSCSSCEEEEEECSSSSC-EEEEEETTTE
T ss_pred HHHCCCCCEEEEEEECCCCEEEEECCCCCCCCEEEEEE--CCCCCE---EEECCCCCEEEEEECCCCCC-EEEEEECCCC
T ss_conf 11125663799999079998999316877755799997--898103---13067743889998878996-8999957995
Q ss_pred EEEEE-CCCCCEEEECCCCC---CEEEEECCCCCCCEEEEEEECCCEEEEEECCCCCCEEEE-C---CCCCCEEEEEECC
Q ss_conf 99996-78960342048844---889983002689429999941892999974889722430-6---9998189999926
Q 001790 477 IKVWE-LSGRKLFNFEGHEA---PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-D---APGHWCTTMLYSA 548 (1012)
Q Consensus 477 i~iwd-~~~~~~~~~~~h~~---~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~---~~~~~v~~i~~s~ 548 (1012)
|++|| .+++.+..+.+|.. .|.+++|+++ ++.++++++.||.|++||+.++.....+ . .+...+.++.|+
T Consensus 185 v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~- 262 (615)
T 1pgu_A 185 VVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPD-SGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL- 262 (615)
T ss_dssp EEEEETTTBEEEEEECSSSCTTCCEEEEEECST-TCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-
T ss_pred EEEEECCCCCEEEEECCCCCCCCEEEEEEECCC-CCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEEC-
T ss_conf 999969996101320256777742899997897-788899986898089998999978589525444567755899981-
Q ss_pred CCCEEEEEEECCCCCCCEEEEECCCCEEEEEECCCC---CCCCEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEEC
Q ss_conf 999699953157999709998079881344530777---88500999816999999995899299995799815899716
Q 001790 549 DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR---KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1012)
Q Consensus 549 ~~~~l~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1012)
++.++++++ .++.+++||+.+++.+..+..+. ...+..+.+. ++..+++++.||.|++|++.+++.+..+..
T Consensus 263 ~~~~l~~~~----~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~ 337 (615)
T 1pgu_A 263 DSQKFATVG----ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISG 337 (615)
T ss_dssp SSSEEEEEE----TTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECC
T ss_pred CCCEEEEEC----CCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEEEC-CCCEEEEEECCCCEEEEECCCCCEEEEEEC
T ss_conf 899799984----899489997888927878847877545714699918-997699997899789998889928899947
Q ss_pred CCCCCCCCEEEEECCCCEEEEEECCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999966368616999999997899399999367842320013886211247640022023644423468988852123
Q 001790 626 EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVER 705 (1012)
Q Consensus 626 ~~~~~~v~~i~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~g~~l~~~~~~~~~~~~~ 705 (1012)
+ ...|.+++| |+ +++++.||.+++|++. ... ..+...+.++++ +++..++++...+...+..
T Consensus 338 ~--~~~v~~~~~-~~---l~~~~~dg~i~~w~~~----~~~-------~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~ 399 (615)
T 1pgu_A 338 H--NKGITALTV-NP---LISGSYDGRIMEWSSS----SMH-------QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNG 399 (615)
T ss_dssp C--SSCEEEEET-TT---TEEEETTSCEEETTTT----EEE-------CCCCSCEEEEEC-CSTTCCEEEETTTEEEETT
T ss_pred C--CCCEEEEEE-CC---CEEECCCCEEEEEECH----HHC-------CCCCCCEEEEEE-CCCCEEEEEECCCCEEEEE
T ss_conf 7--787899995-67---4898799959998752----415-------755685179997-8986799995899799988
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEC-
Q ss_conf 6999887533589988888898732366568898740027850674479960898888775599998338635998302-
Q 001790 706 SSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS- 784 (1012)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~- 784 (1012)
........ ......+.+++..++++ .++.+.+|+... ......+. +...+.+++|+ +..+++++.
T Consensus 400 ~~~~~~~~--~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~------~~~~~~~~~~~--~~~l~~~~~~ 465 (615)
T 1pgu_A 400 ITKHEFGS--QPKVASANNDGFTAVLT-NDDDLLILQSFT---GDIIKSVR------LNSPGSAVSLS--QNYVAVGLEE 465 (615)
T ss_dssp EEEEECSS--CEEEEEECSSSEEEEEE-TTSEEEEEETTT---CCEEEEEE------CSSCEEEEEEC--SSEEEEEETT
T ss_pred CCCCCCCC--CCEEEEECCCCCEEEEE-CCCCEEEEECCC---CCEEEECC------CCCCCEEEEEC--CCEEEEEECC
T ss_conf 66676367--84699982898789996-798269994467---86655515------67872077883--8889996568
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCCEEEEEEEECCCEEEEEC-CCCEEEEECCCCE
Q ss_conf 570576441456569998821223332311588851332024878998774999932898999980-9929999968881
Q 001790 785 NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFK 863 (1012)
Q Consensus 785 dg~i~iw~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~la~~s-dg~i~iwd~~~~~ 863 (1012)
+|.+++|++... ......+.+ |...|.+++|+|++++|++++ ||.|++|++.+++
T Consensus 466 d~~i~~~~~~~~----------------------~~~~~~~~~--~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 521 (615)
T 1pgu_A 466 GNTIQVFKLSDL----------------------EVSFDLKTP--LRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE 521 (615)
T ss_dssp TSCEEEEETTEE----------------------EEEEECSSC--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred CCEEEEEECCCC----------------------CCCCCCCCC--CCCCEEEEEECCCCCEEEECCCCCEEEEEECCCCC
T ss_conf 986999988885----------------------435333677--65750799998999989981799859986577776
Q ss_pred EEEEECC-CCCCEEEEEEECC---------CCCEEEEEECCCEEEEEECCCC-EEEEEECCCCCCEEEEEECCCCCEEEE
Q ss_conf 9999717-9998269999259---------9949999958991999982078-676775056888589999289998999
Q 001790 864 VMTTFMS-PPPASTFLAFHPQ---------DNNIIAIGTEDSTIHIYNVRVD-EVKSKLKGHQKRITGLAFSTSLNILVS 932 (1012)
Q Consensus 864 ~~~~~~~-~~~~i~~l~~sp~---------~~~~las~~~dg~I~iwd~~~~-~~~~~~~~h~~~V~~i~~spdg~~l~s 932 (1012)
.+..+.+ |...|++++|+|. ++++|++++.||.|++|++.++ +++..+.+|.+.|++++|+|+++ |++
T Consensus 522 ~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s 600 (615)
T 1pgu_A 522 VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVS 600 (615)
T ss_dssp EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEE
T ss_pred CEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEECHHHHCCCCCEEEEEECCCCC-EEE
T ss_conf 2467604788714699976832345332468888999817971999977888540311335943058999738997-288
Q ss_pred EECCCCEEEEECCC
Q ss_conf 93899499975899
Q 001790 933 SGADAQLCVWSIDT 946 (1012)
Q Consensus 933 ~s~Dg~i~iwd~~~ 946 (1012)
++.|+.|++|++..
T Consensus 601 ~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 601 SGADACIKRWNVVL 614 (615)
T ss_dssp EETTSCEEEEEEC-
T ss_pred ECCCCEEEEEEEEC
T ss_conf 45996399996015
Done!